Query 011848
Match_columns 476
No_of_seqs 127 out of 1284
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.2E-65 2.6E-70 507.5 45.3 441 1-467 1-449 (451)
2 PLN02562 UDP-glycosyltransfera 100.0 4.1E-65 8.9E-70 505.2 45.6 440 1-467 1-448 (448)
3 PLN02555 limonoid glucosyltran 100.0 7.8E-65 1.7E-69 503.2 45.9 455 1-469 1-470 (480)
4 PLN02173 UDP-glucosyl transfer 100.0 2.5E-64 5.5E-69 495.6 44.3 433 1-467 1-447 (449)
5 PLN02207 UDP-glycosyltransfera 100.0 4.7E-64 1E-68 495.4 44.6 444 4-469 1-466 (468)
6 PLN02210 UDP-glucosyl transfer 100.0 3.5E-63 7.6E-68 491.9 44.5 439 1-467 1-454 (456)
7 PLN02152 indole-3-acetate beta 100.0 6.4E-63 1.4E-67 486.4 43.8 436 5-466 2-454 (455)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.5E-62 3.3E-67 488.7 45.6 455 4-472 7-475 (477)
9 PLN02992 coniferyl-alcohol glu 100.0 4.3E-62 9.3E-67 482.3 44.3 432 6-468 5-469 (481)
10 PLN02670 transferase, transfer 100.0 2.8E-62 6.2E-67 483.2 42.8 450 1-470 1-467 (472)
11 PLN02448 UDP-glycosyltransfera 100.0 4.6E-62 9.9E-67 487.3 44.6 437 5-468 9-457 (459)
12 PLN00164 glucosyltransferase; 100.0 6.3E-62 1.4E-66 486.0 45.2 445 4-471 1-476 (480)
13 PLN02554 UDP-glycosyltransfera 100.0 1.2E-61 2.5E-66 486.0 43.5 446 6-469 2-479 (481)
14 PLN03015 UDP-glucosyl transfer 100.0 7.2E-61 1.6E-65 470.7 44.6 439 6-467 3-467 (470)
15 PLN02764 glycosyltransferase f 100.0 1.1E-60 2.4E-65 468.0 44.5 432 1-474 1-451 (453)
16 PLN02534 UDP-glycosyltransfera 100.0 6.8E-61 1.5E-65 475.7 42.9 447 6-469 8-487 (491)
17 PLN03004 UDP-glycosyltransfera 100.0 6.5E-61 1.4E-65 471.7 40.4 430 7-457 4-450 (451)
18 PLN03007 UDP-glucosyltransfera 100.0 1.4E-60 3.1E-65 478.8 43.4 448 1-468 1-480 (482)
19 PLN02167 UDP-glycosyltransfera 100.0 9.6E-61 2.1E-65 478.7 41.4 442 5-469 2-473 (475)
20 PLN02208 glycosyltransferase f 100.0 1.3E-60 2.8E-65 470.4 41.7 419 1-469 1-440 (442)
21 PLN00414 glycosyltransferase f 100.0 2.8E-59 6.1E-64 461.4 42.0 420 1-470 1-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 6.2E-52 1.3E-56 416.8 27.1 417 6-470 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.5E-52 5.5E-57 427.2 3.1 403 8-469 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 4E-44 8.7E-49 355.4 25.5 384 12-466 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 5.7E-44 1.2E-48 355.9 21.3 379 7-465 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 6.7E-43 1.5E-47 342.3 21.0 392 6-471 1-403 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.5E-41 9.8E-46 344.3 18.8 410 6-448 5-439 (496)
28 PRK12446 undecaprenyldiphospho 100.0 3.9E-26 8.5E-31 221.2 25.4 319 6-440 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4.2E-25 9.1E-30 213.2 23.9 304 7-426 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 3.1E-23 6.8E-28 198.4 26.6 325 7-448 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.9E-22 8.5E-27 192.1 23.2 306 8-435 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.7E-19 3.7E-24 176.9 24.4 337 6-464 1-353 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.2E-17 2.7E-22 163.4 24.8 322 8-441 1-334 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 1.4E-16 2.9E-21 156.9 21.7 348 7-463 6-383 (385)
35 TIGR01133 murG undecaprenyldip 99.7 5.3E-16 1.1E-20 151.7 22.4 86 352-442 243-332 (348)
36 COG4671 Predicted glycosyl tra 99.7 3.2E-16 7E-21 142.9 17.4 337 5-429 8-365 (400)
37 PRK13609 diacylglycerol glucos 99.7 5E-15 1.1E-19 146.5 23.4 141 282-440 201-347 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 2.2E-14 4.7E-19 134.7 22.4 105 283-400 170-279 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 3.5E-14 7.7E-19 140.5 24.1 345 6-464 1-373 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.7E-13 3.7E-18 135.6 23.5 164 281-466 200-369 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 9.4E-16 2E-20 133.1 -3.0 135 285-429 1-144 (167)
42 PF03033 Glyco_transf_28: Glyc 99.4 1.7E-14 3.6E-19 121.3 -0.3 122 9-145 1-134 (139)
43 PLN02605 monogalactosyldiacylg 99.4 9.8E-11 2.1E-15 115.8 25.7 149 281-447 204-361 (382)
44 TIGR03492 conserved hypothetic 99.4 8.8E-11 1.9E-15 115.8 24.9 334 15-439 5-372 (396)
45 cd03814 GT1_like_2 This family 99.3 6.9E-09 1.5E-13 101.5 30.1 157 283-464 196-361 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.2 6.1E-08 1.3E-12 98.6 35.0 138 284-443 263-412 (465)
47 COG3980 spsG Spore coat polysa 99.2 2.9E-09 6.4E-14 95.0 20.9 146 282-443 157-305 (318)
48 cd03823 GT1_ExpE7_like This fa 99.2 4.6E-08 9.9E-13 95.4 30.7 140 282-439 189-337 (359)
49 cd03794 GT1_wbuB_like This fam 99.2 1.4E-08 3.1E-13 99.9 27.3 143 282-444 218-378 (394)
50 PRK10307 putative glycosyl tra 99.1 1.7E-07 3.6E-12 93.9 31.8 114 343-467 284-406 (412)
51 cd03800 GT1_Sucrose_synthase T 99.1 1E-07 2.3E-12 94.7 30.1 87 342-438 282-375 (398)
52 cd04962 GT1_like_5 This family 99.1 5.9E-08 1.3E-12 95.6 27.8 89 342-440 252-345 (371)
53 cd03808 GT1_cap1E_like This fa 99.1 2.4E-07 5.1E-12 90.0 31.4 327 8-445 1-343 (359)
54 cd03817 GT1_UGDG_like This fam 99.1 4.4E-07 9.5E-12 88.8 30.9 129 282-429 200-343 (374)
55 cd03816 GT1_ALG1_like This fam 99.0 2.2E-07 4.9E-12 92.9 27.3 77 343-429 294-381 (415)
56 cd03801 GT1_YqgM_like This fam 99.0 1.1E-06 2.3E-11 85.5 31.3 90 341-440 254-350 (374)
57 cd03818 GT1_ExpC_like This fam 99.0 7.8E-07 1.7E-11 88.6 30.6 86 342-437 280-372 (396)
58 cd03825 GT1_wcfI_like This fam 99.0 8.5E-07 1.8E-11 87.0 30.1 85 341-435 242-334 (365)
59 PRK05749 3-deoxy-D-manno-octul 99.0 8.2E-07 1.8E-11 89.3 29.9 85 354-445 314-402 (425)
60 cd03821 GT1_Bme6_like This fam 99.0 2.1E-06 4.6E-11 83.9 30.7 92 342-445 261-359 (375)
61 TIGR03449 mycothiol_MshA UDP-N 99.0 1.7E-06 3.7E-11 86.5 30.0 92 342-443 282-380 (405)
62 TIGR00236 wecB UDP-N-acetylglu 98.9 1.3E-07 2.9E-12 93.0 21.4 137 283-440 197-343 (365)
63 cd03796 GT1_PIG-A_like This fa 98.9 1.4E-06 3E-11 86.9 28.3 78 342-429 249-333 (398)
64 cd03820 GT1_amsD_like This fam 98.9 3E-06 6.6E-11 81.8 29.2 97 342-447 234-335 (348)
65 cd03795 GT1_like_4 This family 98.9 3E-06 6.5E-11 82.8 29.1 139 282-439 189-340 (357)
66 cd03805 GT1_ALG2_like This fam 98.9 2.4E-06 5.3E-11 84.9 28.7 84 342-436 279-369 (392)
67 cd03798 GT1_wlbH_like This fam 98.9 9.4E-06 2E-10 79.1 32.5 80 342-429 258-344 (377)
68 PF04007 DUF354: Protein of un 98.8 3.4E-06 7.5E-11 80.4 26.2 111 7-141 1-112 (335)
69 cd05844 GT1_like_7 Glycosyltra 98.8 2.5E-06 5.4E-11 83.9 26.2 86 342-437 244-342 (367)
70 TIGR02472 sucr_P_syn_N sucrose 98.8 8.3E-06 1.8E-10 82.3 29.8 85 342-436 316-411 (439)
71 PRK14089 ipid-A-disaccharide s 98.8 1.3E-06 2.9E-11 83.9 22.2 145 283-445 167-332 (347)
72 cd03822 GT1_ecORF704_like This 98.8 1.4E-05 3.1E-10 78.1 29.3 86 341-437 245-340 (366)
73 cd03802 GT1_AviGT4_like This f 98.8 4.2E-06 9.1E-11 81.1 24.9 127 286-429 173-308 (335)
74 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 6.5E-07 1.4E-11 88.0 18.1 139 282-437 197-343 (363)
75 cd03799 GT1_amsK_like This is 98.7 3.8E-05 8.2E-10 74.9 29.6 80 342-429 235-327 (355)
76 cd04951 GT1_WbdM_like This fam 98.7 2E-05 4.3E-10 77.1 27.5 93 342-446 244-342 (360)
77 cd03819 GT1_WavL_like This fam 98.7 5.6E-05 1.2E-09 73.8 29.9 135 282-428 183-329 (355)
78 cd03807 GT1_WbnK_like This fam 98.7 3.5E-05 7.6E-10 75.0 28.4 77 343-429 251-332 (365)
79 TIGR02468 sucrsPsyn_pln sucros 98.6 6.8E-05 1.5E-09 80.8 31.1 91 342-442 547-648 (1050)
80 PRK09922 UDP-D-galactose:(gluc 98.6 2.1E-05 4.6E-10 77.2 24.2 129 283-429 179-324 (359)
81 cd04955 GT1_like_6 This family 98.6 6.7E-05 1.5E-09 73.4 27.9 130 286-437 195-336 (363)
82 PLN02275 transferase, transfer 98.6 4.8E-05 1E-09 75.0 26.7 75 343-427 286-371 (371)
83 cd03811 GT1_WabH_like This fam 98.6 1.5E-05 3.2E-10 77.1 23.0 89 342-440 245-341 (353)
84 COG1519 KdtA 3-deoxy-D-manno-o 98.6 6.8E-05 1.5E-09 71.9 25.7 322 12-447 54-402 (419)
85 cd03809 GT1_mtfB_like This fam 98.5 5.9E-05 1.3E-09 73.7 25.6 94 341-446 251-351 (365)
86 TIGR02149 glgA_Coryne glycogen 98.4 0.00059 1.3E-08 67.6 29.9 138 283-437 200-358 (388)
87 cd03812 GT1_CapH_like This fam 98.4 0.0002 4.4E-09 69.9 25.3 136 282-438 190-338 (358)
88 PRK00654 glgA glycogen synthas 98.4 0.00038 8.2E-09 70.9 27.3 134 283-428 281-427 (466)
89 TIGR02470 sucr_synth sucrose s 98.4 0.0014 3.1E-08 69.3 31.8 78 342-427 618-707 (784)
90 PLN00142 sucrose synthase 98.4 0.00012 2.6E-09 77.2 23.9 89 343-441 642-746 (815)
91 PLN02846 digalactosyldiacylgly 98.4 0.00052 1.1E-08 68.6 26.8 72 347-429 288-363 (462)
92 PRK01021 lpxB lipid-A-disaccha 98.3 9.5E-05 2.1E-09 75.0 21.6 199 235-461 377-601 (608)
93 cd03792 GT1_Trehalose_phosphor 98.3 0.00074 1.6E-08 66.6 27.2 110 342-466 251-369 (372)
94 PLN02949 transferase, transfer 98.3 0.0018 3.8E-08 65.5 28.8 94 342-445 334-441 (463)
95 PF02684 LpxB: Lipid-A-disacch 98.3 9E-05 1.9E-09 71.8 18.5 163 280-457 181-366 (373)
96 cd03791 GT1_Glycogen_synthase_ 98.3 0.0014 3.1E-08 67.0 28.5 135 282-428 294-441 (476)
97 KOG3349 Predicted glycosyltran 98.2 4.5E-06 9.7E-11 67.4 7.7 116 283-410 3-132 (170)
98 TIGR03087 stp1 sugar transfera 98.2 0.0001 2.2E-09 73.4 19.3 87 342-440 279-371 (397)
99 COG0381 WecB UDP-N-acetylgluco 98.2 0.00047 1E-08 65.7 21.5 335 4-442 1-352 (383)
100 PF02350 Epimerase_2: UDP-N-ac 98.2 3.3E-05 7.1E-10 74.9 13.5 254 97-439 55-326 (346)
101 TIGR03088 stp2 sugar transfera 98.2 0.005 1.1E-07 60.7 29.1 79 343-429 255-338 (374)
102 TIGR02095 glgA glycogen/starch 98.1 0.0011 2.4E-08 67.7 24.9 134 283-428 290-436 (473)
103 TIGR03568 NeuC_NnaA UDP-N-acet 98.1 0.00032 6.9E-09 68.8 19.2 130 282-428 200-338 (365)
104 PLN02316 synthase/transferase 98.1 0.012 2.5E-07 64.2 31.2 116 342-464 899-1029(1036)
105 cd04950 GT1_like_1 Glycosyltra 98.1 0.0069 1.5E-07 59.8 27.7 78 342-429 253-340 (373)
106 PRK15179 Vi polysaccharide bio 98.0 0.027 5.8E-07 59.6 32.3 92 342-442 573-674 (694)
107 COG0763 LpxB Lipid A disacchar 98.0 0.0013 2.8E-08 62.6 20.1 178 273-467 178-380 (381)
108 cd03806 GT1_ALG11_like This fa 98.0 0.015 3.3E-07 58.2 28.5 79 342-429 304-392 (419)
109 cd03804 GT1_wbaZ_like This fam 97.7 0.00027 5.9E-09 69.0 10.5 136 286-441 197-337 (351)
110 cd04946 GT1_AmsK_like This fam 97.7 0.0016 3.4E-08 65.1 16.0 88 343-437 289-383 (407)
111 PLN02501 digalactosyldiacylgly 97.7 0.028 6.2E-07 58.2 24.6 75 344-429 602-681 (794)
112 PRK15484 lipopolysaccharide 1, 97.7 0.0028 6E-08 62.7 17.3 85 341-434 255-347 (380)
113 COG5017 Uncharacterized conser 97.6 0.00042 9.1E-09 55.2 8.1 108 286-411 2-122 (161)
114 PF00534 Glycos_transf_1: Glyc 97.6 0.003 6.6E-08 54.6 14.4 90 341-440 71-167 (172)
115 PRK15427 colanic acid biosynth 97.6 0.0031 6.8E-08 62.9 16.1 84 342-435 278-375 (406)
116 PRK09814 beta-1,6-galactofuran 97.4 0.00082 1.8E-08 65.2 9.8 111 341-464 205-331 (333)
117 PRK10125 putative glycosyl tra 97.3 0.22 4.7E-06 49.7 26.5 115 286-424 243-366 (405)
118 PF13844 Glyco_transf_41: Glyc 97.3 0.0082 1.8E-07 59.7 15.0 144 281-437 282-436 (468)
119 cd03813 GT1_like_3 This family 96.9 0.042 9.1E-07 56.1 16.7 91 342-442 353-453 (475)
120 TIGR02918 accessory Sec system 96.9 0.02 4.3E-07 58.6 14.2 99 342-446 375-485 (500)
121 PF13477 Glyco_trans_4_2: Glyc 96.9 0.018 3.9E-07 47.7 11.5 104 8-141 1-108 (139)
122 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0047 1E-07 51.0 7.8 80 342-429 52-135 (135)
123 COG1817 Uncharacterized protei 96.8 0.32 7E-06 45.2 19.1 112 8-142 2-114 (346)
124 PRK10916 ADP-heptose:LPS hepto 96.6 0.53 1.1E-05 45.9 21.5 102 7-137 1-106 (348)
125 TIGR02193 heptsyl_trn_I lipopo 96.6 0.16 3.4E-06 48.9 17.4 131 282-427 178-319 (319)
126 PRK10422 lipopolysaccharide co 96.5 0.72 1.6E-05 45.0 21.1 109 1-137 1-113 (352)
127 PF06722 DUF1205: Protein of u 96.4 0.0052 1.1E-07 47.2 4.3 50 273-322 30-84 (97)
128 cd04949 GT1_gtfA_like This fam 96.2 0.045 9.7E-07 53.8 11.4 83 342-429 260-345 (372)
129 PRK14098 glycogen synthase; Pr 96.2 0.096 2.1E-06 53.6 13.8 132 283-428 306-450 (489)
130 PRK10017 colanic acid biosynth 96.2 0.14 3.1E-06 51.0 14.4 180 274-467 225-423 (426)
131 PHA01633 putative glycosyl tra 96.0 0.05 1.1E-06 52.3 10.0 85 341-428 199-306 (335)
132 TIGR02201 heptsyl_trn_III lipo 95.9 0.67 1.5E-05 45.1 17.7 105 8-137 1-108 (344)
133 COG0859 RfaF ADP-heptose:LPS h 95.9 0.7 1.5E-05 44.8 17.6 104 6-138 1-108 (334)
134 PF13579 Glyco_trans_4_4: Glyc 95.7 0.018 4E-07 48.5 5.3 95 22-140 6-104 (160)
135 COG3914 Spy Predicted O-linked 95.7 0.12 2.6E-06 51.8 11.1 133 280-423 426-572 (620)
136 PF13524 Glyco_trans_1_2: Glyc 95.6 0.15 3.2E-06 38.8 9.3 83 368-464 9-92 (92)
137 PRK15490 Vi polysaccharide bio 95.2 1.2 2.7E-05 45.6 16.9 74 342-423 454-532 (578)
138 TIGR02195 heptsyl_trn_II lipop 95.1 3.5 7.5E-05 39.8 21.4 96 282-387 173-276 (334)
139 PF01975 SurE: Survival protei 94.6 0.16 3.4E-06 44.8 7.7 119 7-141 1-134 (196)
140 PF06258 Mito_fiss_Elm1: Mitoc 94.4 2.2 4.8E-05 40.7 15.4 57 352-411 221-281 (311)
141 PHA01630 putative group 1 glyc 94.1 1.4 3.1E-05 42.6 13.9 108 349-465 196-327 (331)
142 KOG4626 O-linked N-acetylgluco 94.0 0.39 8.6E-06 48.6 9.6 122 282-412 757-889 (966)
143 PLN02939 transferase, transfer 92.7 4.3 9.2E-05 44.4 15.5 84 342-428 836-930 (977)
144 COG1618 Predicted nucleotide k 92.0 1.1 2.3E-05 37.8 7.9 101 6-122 5-111 (179)
145 PF13439 Glyco_transf_4: Glyco 91.6 1 2.2E-05 38.4 8.2 100 16-142 11-111 (177)
146 PF08660 Alg14: Oligosaccharid 91.5 0.95 2.1E-05 38.9 7.6 112 12-140 3-129 (170)
147 cd01635 Glycosyltransferase_GT 90.0 2.2 4.7E-05 37.9 9.1 48 342-391 160-215 (229)
148 COG2894 MinD Septum formation 89.9 2.8 6.1E-05 37.2 8.9 44 6-49 1-46 (272)
149 PRK13932 stationary phase surv 89.3 5.3 0.00011 36.8 10.8 117 6-141 5-134 (257)
150 PF02951 GSH-S_N: Prokaryotic 89.3 0.65 1.4E-05 37.2 4.3 39 7-45 1-42 (119)
151 COG0496 SurE Predicted acid ph 89.3 4.4 9.6E-05 36.9 10.1 113 7-141 1-126 (252)
152 TIGR02400 trehalose_OtsA alpha 89.1 2.7 5.9E-05 42.6 9.7 103 349-467 342-455 (456)
153 PRK14099 glycogen synthase; Pr 88.9 10 0.00022 38.9 13.8 40 4-43 1-46 (485)
154 PRK02261 methylaspartate mutas 88.9 1.1 2.3E-05 37.1 5.5 49 4-52 1-49 (137)
155 COG3660 Predicted nucleoside-d 88.2 21 0.00045 32.8 17.5 38 349-387 234-271 (329)
156 PF12000 Glyco_trans_4_3: Gkyc 87.1 6.9 0.00015 33.6 9.5 40 101-141 57-97 (171)
157 TIGR00087 surE 5'/3'-nucleotid 86.6 10 0.00022 34.8 10.9 114 7-141 1-129 (244)
158 PRK13935 stationary phase surv 86.5 9.5 0.00021 35.0 10.7 39 7-47 1-39 (253)
159 PRK13933 stationary phase surv 86.2 12 0.00026 34.5 11.2 116 7-141 1-130 (253)
160 COG0003 ArsA Predicted ATPase 85.8 3.9 8.5E-05 39.1 8.1 39 6-44 1-40 (322)
161 cd03788 GT1_TPS Trehalose-6-Ph 85.2 2.5 5.3E-05 43.0 7.0 103 349-466 347-459 (460)
162 cd01635 Glycosyltransferase_GT 84.4 4.2 9.1E-05 36.0 7.6 26 16-41 12-37 (229)
163 cd02067 B12-binding B12 bindin 84.3 2 4.2E-05 34.4 4.7 44 8-51 1-44 (119)
164 TIGR03713 acc_sec_asp1 accesso 84.3 4.3 9.3E-05 41.8 8.2 74 343-429 409-488 (519)
165 PRK00346 surE 5'(3')-nucleotid 83.8 17 0.00038 33.3 11.1 112 7-141 1-125 (250)
166 PRK10964 ADP-heptose:LPS hepto 82.8 7.9 0.00017 37.2 9.1 134 283-428 178-321 (322)
167 PF02441 Flavoprotein: Flavopr 82.6 1.7 3.7E-05 35.4 3.8 45 7-52 1-45 (129)
168 PF04413 Glycos_transf_N: 3-De 82.2 7.4 0.00016 34.0 7.8 99 9-140 23-126 (186)
169 cd01425 RPS2 Ribosomal protein 81.9 5.3 0.00011 35.2 6.8 33 110-142 126-160 (193)
170 PRK05973 replicative DNA helic 81.9 7.8 0.00017 35.3 8.0 45 8-52 66-110 (237)
171 PF04464 Glyphos_transf: CDP-G 81.1 3 6.4E-05 41.0 5.6 109 342-458 251-363 (369)
172 cd00561 CobA_CobO_BtuR ATP:cor 81.0 32 0.0007 29.1 10.9 98 8-122 4-106 (159)
173 cd03789 GT1_LPS_heptosyltransf 80.9 17 0.00036 34.0 10.4 101 8-137 1-105 (279)
174 PRK01077 cobyrinic acid a,c-di 80.7 7.5 0.00016 39.4 8.3 107 5-142 2-124 (451)
175 COG0438 RfaG Glycosyltransfera 80.6 50 0.0011 30.8 16.0 87 343-439 257-350 (381)
176 PRK13931 stationary phase surv 79.8 24 0.00053 32.6 10.6 112 8-140 2-129 (261)
177 TIGR00715 precor6x_red precorr 79.6 14 0.0003 34.2 9.0 92 7-138 1-98 (256)
178 PRK13934 stationary phase surv 78.2 27 0.00059 32.3 10.3 39 7-47 1-39 (266)
179 COG0052 RpsB Ribosomal protein 78.1 11 0.00025 34.0 7.5 34 110-143 155-190 (252)
180 KOG1111 N-acetylglucosaminyltr 77.4 72 0.0016 30.9 19.1 84 295-387 207-301 (426)
181 TIGR02919 accessory Sec system 77.3 8.6 0.00019 38.7 7.4 139 281-447 281-427 (438)
182 PRK06718 precorrin-2 dehydroge 77.2 48 0.0011 29.3 11.5 144 280-448 8-165 (202)
183 PF02310 B12-binding: B12 bind 76.9 6.8 0.00015 31.2 5.6 44 7-50 1-44 (121)
184 PRK12311 rpsB 30S ribosomal pr 76.6 8 0.00017 36.9 6.6 34 110-143 151-186 (326)
185 cd03793 GT1_Glycogen_synthase_ 76.0 7.6 0.00017 40.1 6.7 73 352-428 467-551 (590)
186 COG1703 ArgK Putative periplas 75.9 67 0.0014 30.3 12.0 118 6-138 51-172 (323)
187 PRK02797 4-alpha-L-fucosyltran 75.2 63 0.0014 30.7 11.8 80 343-427 206-292 (322)
188 TIGR01470 cysG_Nterm siroheme 74.3 58 0.0012 28.9 11.2 145 281-447 8-164 (205)
189 cd03789 GT1_LPS_heptosyltransf 73.1 11 0.00024 35.2 6.8 95 283-387 121-223 (279)
190 PF05159 Capsule_synth: Capsul 72.1 15 0.00032 34.3 7.3 42 345-389 185-226 (269)
191 PLN03063 alpha,alpha-trehalose 72.0 15 0.00033 40.1 8.2 100 355-470 371-479 (797)
192 COG2185 Sbm Methylmalonyl-CoA 71.9 7.9 0.00017 31.9 4.6 46 5-50 11-56 (143)
193 cd00550 ArsA_ATPase Oxyanion-t 71.9 23 0.00049 32.7 8.4 42 10-52 4-45 (254)
194 COG4370 Uncharacterized protei 71.4 12 0.00026 34.9 6.1 105 349-468 301-409 (412)
195 COG2910 Putative NADH-flavin r 71.0 7.4 0.00016 33.6 4.4 32 7-42 1-32 (211)
196 PRK05986 cob(I)alamin adenolsy 70.7 73 0.0016 27.9 11.7 101 5-122 21-126 (191)
197 PF12146 Hydrolase_4: Putative 69.9 9.1 0.0002 28.1 4.2 36 7-42 16-51 (79)
198 TIGR02015 BchY chlorophyllide 69.4 37 0.00081 34.0 9.8 90 8-139 287-380 (422)
199 PRK06029 3-octaprenyl-4-hydrox 68.6 7.5 0.00016 33.9 4.1 45 6-51 1-46 (185)
200 PRK14099 glycogen synthase; Pr 68.6 7.8 0.00017 39.7 5.0 85 342-429 349-447 (485)
201 cd01980 Chlide_reductase_Y Chl 68.4 31 0.00068 34.5 9.1 32 103-139 344-375 (416)
202 PRK14098 glycogen synthase; Pr 68.3 8.5 0.00019 39.4 5.2 39 5-43 4-48 (489)
203 PRK07313 phosphopantothenoylcy 67.8 7.5 0.00016 33.8 4.0 42 6-48 1-42 (182)
204 cd01974 Nitrogenase_MoFe_beta 67.8 50 0.0011 33.3 10.4 34 100-138 368-401 (435)
205 PRK13789 phosphoribosylamine-- 67.6 11 0.00023 38.0 5.5 38 1-45 1-38 (426)
206 PF02702 KdpD: Osmosensitive K 67.3 50 0.0011 29.1 8.8 40 6-45 5-44 (211)
207 PRK08305 spoVFB dipicolinate s 67.3 8.6 0.00019 33.8 4.2 41 6-46 5-45 (196)
208 PRK06249 2-dehydropantoate 2-r 66.7 8.1 0.00017 37.0 4.4 42 1-49 1-42 (313)
209 PF04127 DFP: DNA / pantothena 66.3 5.4 0.00012 34.8 2.8 37 8-44 5-53 (185)
210 COG1484 DnaC DNA replication p 66.1 9.5 0.00021 35.2 4.6 46 7-52 106-151 (254)
211 PF10649 DUF2478: Protein of u 65.8 64 0.0014 27.3 8.9 114 10-142 2-133 (159)
212 PRK06321 replicative DNA helic 65.7 24 0.00053 35.9 7.7 44 9-52 229-273 (472)
213 PRK10964 ADP-heptose:LPS hepto 65.5 40 0.00087 32.3 9.0 43 7-49 1-45 (322)
214 PRK05595 replicative DNA helic 65.2 27 0.00058 35.3 7.9 44 9-52 204-248 (444)
215 TIGR00347 bioD dethiobiotin sy 65.2 61 0.0013 27.4 9.2 28 13-40 5-32 (166)
216 KOG2941 Beta-1,4-mannosyltrans 64.5 1.1E+02 0.0023 29.6 10.9 126 6-145 12-142 (444)
217 PRK08506 replicative DNA helic 64.5 25 0.00054 35.8 7.6 44 9-52 195-238 (472)
218 PRK06732 phosphopantothenate-- 64.3 9.6 0.00021 34.6 4.1 37 7-43 1-49 (229)
219 cd02070 corrinoid_protein_B12- 64.1 15 0.00034 32.5 5.4 47 6-52 82-128 (201)
220 PRK00090 bioD dithiobiotin syn 64.0 44 0.00095 29.9 8.5 34 9-42 2-36 (222)
221 cd02071 MM_CoA_mut_B12_BD meth 64.0 15 0.00032 29.6 4.8 44 8-51 1-44 (122)
222 PF01075 Glyco_transf_9: Glyco 63.8 17 0.00037 33.1 5.9 95 281-387 103-208 (247)
223 PRK11519 tyrosine kinase; Prov 63.2 1E+02 0.0022 33.5 12.3 121 6-140 525-668 (719)
224 TIGR03029 EpsG chain length de 63.2 1E+02 0.0022 28.6 11.1 36 7-42 103-140 (274)
225 PF01210 NAD_Gly3P_dh_N: NAD-d 62.9 5.5 0.00012 33.7 2.2 32 8-44 1-32 (157)
226 PF01012 ETF: Electron transfe 62.5 15 0.00033 31.2 4.9 110 9-141 2-123 (164)
227 PRK12825 fabG 3-ketoacyl-(acyl 62.0 15 0.00033 33.2 5.2 39 1-43 1-39 (249)
228 PRK08760 replicative DNA helic 61.9 22 0.00048 36.2 6.7 44 9-52 232-276 (476)
229 PF00551 Formyl_trans_N: Formy 61.9 36 0.00079 29.5 7.2 27 7-36 1-27 (181)
230 PRK09739 hypothetical protein; 61.5 20 0.00042 31.7 5.6 39 4-42 1-42 (199)
231 PRK10490 sensor protein KdpD; 61.2 35 0.00077 38.0 8.6 40 6-45 24-63 (895)
232 PF06925 MGDG_synth: Monogalac 61.1 19 0.00042 30.8 5.3 46 93-140 73-124 (169)
233 smart00851 MGS MGS-like domain 60.8 68 0.0015 23.9 8.3 80 23-137 2-90 (90)
234 TIGR02370 pyl_corrinoid methyl 60.2 22 0.00047 31.4 5.5 47 6-52 84-130 (197)
235 PF07429 Glyco_transf_56: 4-al 60.2 1.7E+02 0.0037 28.3 11.9 81 343-428 245-332 (360)
236 COG0132 BioD Dethiobiotin synt 60.1 67 0.0015 28.9 8.6 128 6-147 1-151 (223)
237 PRK12342 hypothetical protein; 60.1 16 0.00035 33.6 4.8 40 100-141 100-145 (254)
238 PRK03359 putative electron tra 59.7 16 0.00034 33.8 4.7 41 99-141 102-148 (256)
239 PRK09620 hypothetical protein; 59.5 23 0.0005 32.1 5.7 37 7-43 4-52 (229)
240 PRK05647 purN phosphoribosylgl 59.2 98 0.0021 27.4 9.5 34 6-42 1-36 (200)
241 TIGR03880 KaiC_arch_3 KaiC dom 59.1 25 0.00054 31.6 5.9 45 8-52 18-62 (224)
242 PRK07206 hypothetical protein; 58.8 35 0.00076 34.0 7.5 32 8-44 4-35 (416)
243 PRK14501 putative bifunctional 58.7 27 0.00059 37.9 7.0 111 347-469 346-463 (726)
244 TIGR00379 cobB cobyrinic acid 58.6 46 0.001 33.7 8.3 107 9-143 2-121 (449)
245 PF02142 MGS: MGS-like domain 58.6 17 0.00038 27.6 4.1 85 23-137 2-95 (95)
246 PRK05920 aromatic acid decarbo 58.5 15 0.00033 32.6 4.2 45 6-51 3-47 (204)
247 KOG0081 GTPase Rab27, small G 57.9 20 0.00043 30.0 4.4 46 100-145 108-168 (219)
248 TIGR00416 sms DNA repair prote 57.4 48 0.001 33.6 8.1 42 9-50 97-138 (454)
249 PF03446 NAD_binding_2: NAD bi 57.3 12 0.00026 31.9 3.3 32 6-42 1-32 (163)
250 PF02571 CbiJ: Precorrin-6x re 57.1 14 0.0003 34.0 3.9 38 99-138 56-99 (249)
251 PRK14478 nitrogenase molybdenu 56.9 69 0.0015 32.7 9.3 33 100-137 384-416 (475)
252 cd03466 Nitrogenase_NifN_2 Nit 56.8 89 0.0019 31.4 10.0 35 99-138 362-396 (429)
253 COG1797 CobB Cobyrinic acid a, 56.7 14 0.0003 36.5 3.9 108 12-148 7-127 (451)
254 PRK09165 replicative DNA helic 56.7 47 0.001 34.1 8.0 44 9-52 220-278 (497)
255 PRK13234 nifH nitrogenase redu 56.5 22 0.00048 33.7 5.3 37 8-44 6-42 (295)
256 TIGR01501 MthylAspMutase methy 56.1 27 0.00059 28.6 5.0 46 7-52 2-47 (134)
257 PF02585 PIG-L: GlcNAc-PI de-N 55.9 79 0.0017 25.3 7.9 32 10-42 2-33 (128)
258 PRK08229 2-dehydropantoate 2-r 55.8 13 0.00029 35.9 3.8 34 6-44 2-35 (341)
259 cd01121 Sms Sms (bacterial rad 55.7 36 0.00079 33.4 6.7 41 9-49 85-125 (372)
260 PRK05636 replicative DNA helic 55.6 19 0.00042 36.9 5.0 44 9-52 268-312 (505)
261 TIGR00708 cobA cob(I)alamin ad 55.6 1.4E+02 0.0029 25.8 9.7 98 6-122 5-108 (173)
262 CHL00072 chlL photochlorophyll 55.5 22 0.00047 33.6 5.0 38 7-44 1-38 (290)
263 TIGR02852 spore_dpaB dipicolin 55.0 17 0.00036 31.8 3.8 38 8-45 2-39 (187)
264 PRK13185 chlL protochlorophyll 54.9 20 0.00044 33.3 4.8 36 8-43 4-39 (270)
265 PRK03767 NAD(P)H:quinone oxido 54.6 23 0.00049 31.3 4.8 38 6-43 1-40 (200)
266 COG0240 GpsA Glycerol-3-phosph 54.4 2.1E+02 0.0045 27.5 11.7 34 6-44 1-34 (329)
267 PRK06522 2-dehydropantoate 2-r 54.3 17 0.00036 34.5 4.2 31 7-42 1-31 (304)
268 cd01965 Nitrogenase_MoFe_beta_ 54.3 39 0.00084 34.0 6.9 34 100-138 362-395 (428)
269 PRK05299 rpsB 30S ribosomal pr 54.2 38 0.00081 31.4 6.2 34 110-143 156-191 (258)
270 COG2085 Predicted dinucleotide 54.1 20 0.00044 31.7 4.2 34 6-44 1-34 (211)
271 COG4088 Predicted nucleotide k 54.0 17 0.00037 32.1 3.6 38 6-43 1-38 (261)
272 PF02374 ArsA_ATPase: Anion-tr 53.7 18 0.00039 34.5 4.2 38 7-44 1-39 (305)
273 COG0287 TyrA Prephenate dehydr 53.5 19 0.0004 33.8 4.2 42 6-52 3-44 (279)
274 TIGR03878 thermo_KaiC_2 KaiC d 52.7 59 0.0013 30.1 7.4 36 9-44 39-74 (259)
275 PRK12921 2-dehydropantoate 2-r 52.7 17 0.00037 34.4 4.0 39 7-50 1-39 (305)
276 TIGR03877 thermo_KaiC_1 KaiC d 52.4 1.8E+02 0.0039 26.3 10.7 44 8-51 23-66 (237)
277 TIGR01281 DPOR_bchL light-inde 52.4 24 0.00052 32.7 4.8 37 7-43 1-37 (268)
278 PRK00784 cobyric acid synthase 52.2 67 0.0014 33.0 8.3 35 8-42 4-39 (488)
279 COG1435 Tdk Thymidine kinase [ 51.9 71 0.0015 28.1 7.0 105 5-138 2-116 (201)
280 PRK05632 phosphate acetyltrans 51.8 2.1E+02 0.0047 30.8 12.3 35 8-42 4-39 (684)
281 PRK11823 DNA repair protein Ra 51.3 48 0.001 33.5 7.0 41 9-49 83-123 (446)
282 PRK10037 cell division protein 50.9 26 0.00057 32.1 4.8 39 6-44 1-40 (250)
283 cd02032 Bchl_like This family 50.8 26 0.00056 32.5 4.7 37 7-43 1-37 (267)
284 cd02069 methionine_synthase_B1 50.7 37 0.0008 30.4 5.5 47 6-52 88-134 (213)
285 TIGR02195 heptsyl_trn_II lipop 50.4 40 0.00088 32.4 6.2 99 8-141 176-279 (334)
286 PF07355 GRDB: Glycine/sarcosi 50.4 25 0.00054 33.7 4.4 41 97-139 68-118 (349)
287 PRK11064 wecC UDP-N-acetyl-D-m 50.4 22 0.00047 35.6 4.4 34 4-42 1-34 (415)
288 cd00532 MGS-like MGS-like doma 50.2 1.2E+02 0.0027 23.7 9.5 85 19-138 10-105 (112)
289 cd01968 Nitrogenase_NifE_I Nit 49.9 1.2E+02 0.0026 30.2 9.7 34 100-138 347-380 (410)
290 TIGR00665 DnaB replicative DNA 49.8 56 0.0012 32.9 7.3 44 9-52 198-242 (434)
291 TIGR01283 nifE nitrogenase mol 49.0 1.2E+02 0.0026 30.8 9.6 35 99-138 385-419 (456)
292 PRK07236 hypothetical protein; 48.5 32 0.00069 33.9 5.2 37 1-42 1-37 (386)
293 PRK00094 gpsA NAD(P)H-dependen 48.4 21 0.00045 34.2 3.8 33 6-43 1-33 (325)
294 PRK09841 cryptic autophosphory 48.4 2.9E+02 0.0064 30.0 12.8 39 6-44 530-570 (726)
295 PRK13982 bifunctional SbtC-lik 48.3 24 0.00051 35.8 4.2 39 6-44 256-306 (475)
296 KOG0853 Glycosyltransferase [C 48.2 16 0.00036 36.9 3.0 61 373-442 381-444 (495)
297 cd01715 ETF_alpha The electron 48.0 1.4E+02 0.0031 25.3 8.6 41 99-141 73-116 (168)
298 PLN02470 acetolactate synthase 47.7 58 0.0012 34.3 7.2 92 289-388 2-109 (585)
299 PRK06756 flavodoxin; Provision 47.7 34 0.00074 28.4 4.6 37 6-42 1-38 (148)
300 COG1748 LYS9 Saccharopine dehy 47.5 1.4E+02 0.0031 29.4 9.3 42 6-52 1-44 (389)
301 PRK06849 hypothetical protein; 47.4 34 0.00074 33.8 5.3 35 6-44 4-38 (389)
302 PRK07773 replicative DNA helic 47.4 58 0.0013 36.2 7.4 44 9-52 220-264 (886)
303 COG2109 BtuR ATP:corrinoid ade 47.4 1.7E+02 0.0037 25.6 8.6 99 8-122 30-133 (198)
304 cd03115 SRP The signal recogni 47.1 1E+02 0.0023 26.1 7.7 38 9-46 3-40 (173)
305 TIGR01011 rpsB_bact ribosomal 46.8 60 0.0013 29.3 6.2 34 110-143 154-189 (225)
306 PRK10427 putative PTS system f 46.5 44 0.00095 26.5 4.7 39 6-44 2-43 (114)
307 TIGR01007 eps_fam capsular exo 46.4 39 0.00084 29.8 5.0 38 7-44 17-56 (204)
308 PRK14618 NAD(P)H-dependent gly 46.1 26 0.00056 33.7 4.1 33 6-43 4-36 (328)
309 PRK05579 bifunctional phosphop 45.7 35 0.00077 33.8 4.9 46 4-50 4-49 (399)
310 COG2861 Uncharacterized protei 45.3 78 0.0017 28.7 6.4 47 91-138 130-179 (250)
311 TIGR00421 ubiX_pad polyprenyl 45.1 27 0.00059 30.3 3.6 42 8-50 1-42 (181)
312 TIGR01005 eps_transp_fam exopo 44.9 2.1E+02 0.0045 31.3 11.2 39 6-44 545-585 (754)
313 cd01423 MGS_CPS_I_III Methylgl 44.6 1.5E+02 0.0033 23.2 8.8 87 19-137 11-106 (116)
314 PRK11199 tyrA bifunctional cho 44.4 1.4E+02 0.003 29.4 8.9 33 6-43 98-131 (374)
315 COG2099 CobK Precorrin-6x redu 44.4 62 0.0013 29.6 5.8 107 23-139 117-229 (257)
316 COG0859 RfaF ADP-heptose:LPS h 43.5 73 0.0016 30.7 6.8 99 7-141 176-279 (334)
317 cd02065 B12-binding_like B12 b 43.4 52 0.0011 26.1 4.9 42 9-50 2-43 (125)
318 PF08323 Glyco_transf_5: Starc 43.3 21 0.00045 32.8 2.8 25 20-44 19-43 (245)
319 PLN02939 transferase, transfer 43.2 45 0.00098 36.9 5.5 40 5-44 480-525 (977)
320 PRK06067 flagellar accessory p 43.0 50 0.0011 29.9 5.3 44 8-51 27-70 (234)
321 PRK13768 GTPase; Provisional 43.0 79 0.0017 29.1 6.6 37 8-44 4-40 (253)
322 PF00318 Ribosomal_S2: Ribosom 42.9 69 0.0015 28.6 5.9 33 110-142 142-176 (211)
323 TIGR01285 nifN nitrogenase mol 42.6 1.1E+02 0.0023 30.9 7.9 86 7-138 312-397 (432)
324 COG2987 HutU Urocanate hydrata 42.6 11 0.00025 36.9 0.9 133 245-385 358-507 (561)
325 PF00731 AIRC: AIR carboxylase 42.5 2E+02 0.0044 24.1 12.8 138 284-448 1-149 (150)
326 PRK13236 nitrogenase reductase 42.3 53 0.0011 31.1 5.4 44 1-44 1-44 (296)
327 COG3349 Uncharacterized conser 42.2 26 0.00056 35.5 3.4 33 7-44 1-33 (485)
328 cd04299 GT1_Glycogen_Phosphory 41.6 4.5E+02 0.0097 28.8 12.6 180 283-470 476-691 (778)
329 TIGR02699 archaeo_AfpA archaeo 41.6 42 0.00092 28.9 4.2 39 8-47 1-41 (174)
330 TIGR00959 ffh signal recogniti 41.5 99 0.0021 31.1 7.3 41 8-48 101-142 (428)
331 PF00862 Sucrose_synth: Sucros 41.4 29 0.00063 35.1 3.5 40 102-141 392-433 (550)
332 PRK10916 ADP-heptose:LPS hepto 41.4 65 0.0014 31.2 6.1 102 8-140 182-288 (348)
333 TIGR02655 circ_KaiC circadian 41.4 1.6E+02 0.0035 30.2 9.1 45 8-52 265-309 (484)
334 PRK14569 D-alanyl-alanine synt 41.2 52 0.0011 31.1 5.2 38 5-42 2-43 (296)
335 PRK13230 nitrogenase reductase 41.1 49 0.0011 30.9 5.0 39 6-44 1-39 (279)
336 cd02040 NifH NifH gene encodes 40.9 48 0.001 30.7 4.9 37 8-44 3-39 (270)
337 PF04493 Endonuclease_5: Endon 40.7 49 0.0011 29.4 4.5 43 97-139 75-124 (206)
338 PRK14477 bifunctional nitrogen 40.7 1.7E+02 0.0036 32.9 9.6 35 100-139 380-414 (917)
339 PRK14619 NAD(P)H-dependent gly 40.6 38 0.00083 32.2 4.3 33 6-43 4-36 (308)
340 TIGR01918 various_sel_PB selen 40.4 43 0.00094 33.0 4.5 42 97-140 64-115 (431)
341 PF01695 IstB_IS21: IstB-like 40.4 41 0.00089 29.1 4.0 45 7-51 48-92 (178)
342 TIGR01917 gly_red_sel_B glycin 40.2 44 0.00094 33.0 4.4 42 97-140 64-115 (431)
343 KOG1209 1-Acyl dihydroxyaceton 39.7 49 0.0011 29.5 4.2 39 1-41 1-39 (289)
344 CHL00067 rps2 ribosomal protei 39.6 90 0.002 28.3 6.2 34 110-143 160-195 (230)
345 PRK12827 short chain dehydroge 39.6 62 0.0013 29.2 5.4 37 1-41 1-37 (249)
346 TIGR02700 flavo_MJ0208 archaeo 39.5 47 0.001 30.2 4.4 42 8-49 1-44 (234)
347 PF06564 YhjQ: YhjQ protein; 39.2 58 0.0012 29.8 4.9 35 8-42 3-38 (243)
348 PLN02240 UDP-glucose 4-epimera 39.2 50 0.0011 31.9 4.9 35 4-42 3-37 (352)
349 TIGR00640 acid_CoA_mut_C methy 39.1 77 0.0017 25.9 5.2 44 6-49 2-45 (132)
350 TIGR01286 nifK nitrogenase mol 38.7 2.4E+02 0.0052 29.2 9.8 34 100-138 428-461 (515)
351 PF09314 DUF1972: Domain of un 38.7 43 0.00093 29.2 3.8 57 6-72 1-62 (185)
352 PRK10818 cell division inhibit 38.6 50 0.0011 30.6 4.6 39 6-44 1-41 (270)
353 COG2210 Peroxiredoxin family p 38.6 69 0.0015 26.2 4.7 34 10-43 7-40 (137)
354 PRK13235 nifH nitrogenase redu 38.5 52 0.0011 30.7 4.7 37 7-43 2-38 (274)
355 PRK08293 3-hydroxybutyryl-CoA 38.3 38 0.00081 31.9 3.8 34 5-43 2-35 (287)
356 PF09001 DUF1890: Domain of un 38.2 30 0.00064 28.2 2.5 30 21-50 14-43 (139)
357 PRK05993 short chain dehydroge 37.7 61 0.0013 30.1 5.1 35 5-42 2-36 (277)
358 COG2084 MmsB 3-hydroxyisobutyr 37.7 46 0.001 31.2 4.1 32 7-43 1-32 (286)
359 COG1192 Soj ATPases involved i 37.5 49 0.0011 30.5 4.4 38 8-45 4-43 (259)
360 PRK08265 short chain dehydroge 37.4 64 0.0014 29.6 5.1 38 1-42 1-38 (261)
361 PF13450 NAD_binding_8: NAD(P) 37.3 42 0.00091 23.6 3.0 22 23-44 8-29 (68)
362 PF02571 CbiJ: Precorrin-6x re 37.3 1.1E+02 0.0025 28.0 6.6 103 23-139 118-226 (249)
363 TIGR00853 pts-lac PTS system, 37.1 91 0.002 23.7 5.0 39 5-43 2-40 (95)
364 PF03808 Glyco_tran_WecB: Glyc 37.1 2.7E+02 0.0058 23.8 8.9 90 23-137 37-131 (172)
365 TIGR01380 glut_syn glutathione 37.1 52 0.0011 31.4 4.5 39 7-45 1-42 (312)
366 cd02034 CooC The accessory pro 36.9 82 0.0018 25.0 4.9 37 8-44 1-37 (116)
367 TIGR02113 coaC_strep phosphopa 36.9 44 0.00095 28.9 3.6 39 8-47 2-40 (177)
368 KOG2941 Beta-1,4-mannosyltrans 36.7 4.1E+02 0.0088 25.9 10.6 129 282-428 253-404 (444)
369 PRK06703 flavodoxin; Provision 36.6 60 0.0013 27.0 4.4 38 6-43 1-39 (151)
370 PF08433 KTI12: Chromatin asso 36.5 2.2E+02 0.0049 26.5 8.5 99 8-142 3-107 (270)
371 PRK12446 undecaprenyldiphospho 36.4 85 0.0018 30.6 6.0 95 284-387 3-120 (352)
372 PRK11780 isoprenoid biosynthes 36.3 77 0.0017 28.5 5.2 38 7-44 2-43 (217)
373 KOG0832 Mitochondrial/chloropl 36.1 67 0.0014 28.8 4.5 114 16-143 90-207 (251)
374 PRK07453 protochlorophyllide o 36.0 66 0.0014 30.7 5.2 38 1-42 1-38 (322)
375 COG0541 Ffh Signal recognition 35.9 1.1E+02 0.0023 30.6 6.3 43 5-47 99-141 (451)
376 PRK01175 phosphoribosylformylg 35.9 3.6E+02 0.0078 25.0 10.5 35 6-43 3-37 (261)
377 cd06559 Endonuclease_V Endonuc 35.6 33 0.00071 30.6 2.7 40 99-138 81-127 (208)
378 PRK13302 putative L-aspartate 35.5 52 0.0011 30.7 4.2 38 1-43 1-40 (271)
379 COG0163 UbiX 3-polyprenyl-4-hy 35.4 84 0.0018 27.2 4.9 46 6-52 2-47 (191)
380 TIGR00313 cobQ cobyric acid sy 35.3 3.2E+02 0.0069 27.9 10.1 29 15-43 8-36 (475)
381 PRK05579 bifunctional phosphop 35.2 2.7E+02 0.0058 27.7 9.3 136 282-428 6-182 (399)
382 KOG0780 Signal recognition par 35.1 68 0.0015 31.4 4.7 41 7-47 102-142 (483)
383 PF14871 GHL6: Hypothetical gl 35.1 1.9E+02 0.0042 23.6 6.9 86 21-119 44-132 (132)
384 COG1090 Predicted nucleoside-d 34.9 1.8E+02 0.0039 27.2 7.2 21 24-44 12-32 (297)
385 PF07015 VirC1: VirC1 protein; 34.7 98 0.0021 28.0 5.5 39 8-46 3-42 (231)
386 cd01141 TroA_d Periplasmic bin 34.6 59 0.0013 28.0 4.2 39 98-139 59-99 (186)
387 PLN00016 RNA-binding protein; 34.6 46 0.00099 32.7 3.9 38 6-43 52-89 (378)
388 COG0151 PurD Phosphoribosylami 34.4 1.7E+02 0.0036 29.1 7.3 34 7-45 1-34 (428)
389 PRK06395 phosphoribosylamine-- 34.4 1.2E+02 0.0025 30.7 6.7 32 6-42 2-33 (435)
390 PRK06835 DNA replication prote 34.2 63 0.0014 31.2 4.6 44 7-50 184-227 (329)
391 cd01424 MGS_CPS_II Methylglyox 34.2 2.2E+02 0.0048 22.0 9.1 84 19-138 11-101 (110)
392 PF15092 UPF0728: Uncharacteri 34.2 1.4E+02 0.003 22.2 5.1 44 1-44 1-48 (88)
393 KOG3062 RNA polymerase II elon 34.1 86 0.0019 28.3 4.9 31 6-36 1-31 (281)
394 cd01421 IMPCH Inosine monophos 34.1 2.2E+02 0.0048 24.8 7.4 31 20-52 10-40 (187)
395 PRK13896 cobyrinic acid a,c-di 34.1 3.6E+02 0.0078 27.2 10.0 35 8-42 3-38 (433)
396 PRK12744 short chain dehydroge 34.1 76 0.0016 29.0 5.1 38 1-41 1-39 (257)
397 TIGR00725 conserved hypothetic 33.9 62 0.0013 27.4 4.0 34 6-39 1-36 (159)
398 CHL00175 minD septum-site dete 33.9 78 0.0017 29.6 5.2 40 5-44 13-54 (281)
399 PRK10422 lipopolysaccharide co 33.9 1.1E+02 0.0024 29.7 6.4 34 101-140 256-289 (352)
400 PRK06180 short chain dehydroge 33.7 76 0.0016 29.4 5.1 32 8-42 5-36 (277)
401 PF05728 UPF0227: Uncharacteri 33.6 78 0.0017 27.7 4.7 43 100-142 48-91 (187)
402 TIGR00521 coaBC_dfp phosphopan 33.5 57 0.0012 32.3 4.3 44 6-50 3-46 (390)
403 PF12695 Abhydrolase_5: Alpha/ 33.2 77 0.0017 25.5 4.5 36 9-44 1-36 (145)
404 PRK13232 nifH nitrogenase redu 33.2 68 0.0015 29.8 4.6 36 7-42 2-37 (273)
405 PRK15116 sulfur acceptor prote 33.1 1.7E+02 0.0037 27.2 7.1 34 5-43 29-63 (268)
406 PRK13869 plasmid-partitioning 33.0 83 0.0018 31.4 5.4 38 7-44 121-160 (405)
407 COG1066 Sms Predicted ATP-depe 32.9 75 0.0016 31.4 4.7 40 9-49 96-135 (456)
408 TIGR01012 Sa_S2_E_A ribosomal 32.8 37 0.0008 29.9 2.5 32 111-142 108-141 (196)
409 KOG1250 Threonine/serine dehyd 32.8 2.7E+02 0.0059 27.4 8.3 61 365-429 248-316 (457)
410 PF01372 Melittin: Melittin; 32.8 9.8 0.00021 20.6 -0.6 18 370-387 1-18 (26)
411 PRK00881 purH bifunctional pho 32.8 3.2E+02 0.0069 28.1 9.3 41 6-52 4-44 (513)
412 cd06318 PBP1_ABC_sugar_binding 32.7 3.7E+02 0.0081 24.5 9.7 30 111-140 55-88 (282)
413 TIGR03026 NDP-sugDHase nucleot 32.7 59 0.0013 32.5 4.3 31 7-42 1-31 (411)
414 PF10087 DUF2325: Uncharacteri 32.2 1E+02 0.0023 23.4 4.7 35 111-145 48-88 (97)
415 TIGR03575 selen_PSTK_euk L-ser 32.1 4.1E+02 0.009 25.7 9.7 37 10-46 3-40 (340)
416 PRK04940 hypothetical protein; 32.0 89 0.0019 27.1 4.7 31 111-141 60-91 (180)
417 PRK07819 3-hydroxybutyryl-CoA 31.8 54 0.0012 30.9 3.7 35 5-44 4-38 (286)
418 PRK07313 phosphopantothenoylcy 31.7 3.4E+02 0.0075 23.5 9.6 47 381-428 113-179 (182)
419 cd07039 TPP_PYR_POX Pyrimidine 31.7 3.2E+02 0.0069 23.1 9.7 27 362-388 64-96 (164)
420 TIGR02237 recomb_radB DNA repa 31.7 3.5E+02 0.0077 23.6 10.2 43 9-51 15-58 (209)
421 PRK06719 precorrin-2 dehydroge 31.7 61 0.0013 27.4 3.6 32 7-43 14-45 (157)
422 PRK12826 3-ketoacyl-(acyl-carr 31.6 1E+02 0.0022 27.8 5.5 31 8-42 8-38 (251)
423 PRK05246 glutathione synthetas 31.6 70 0.0015 30.6 4.5 39 6-44 1-42 (316)
424 PF04558 tRNA_synt_1c_R1: Glut 31.5 54 0.0012 28.0 3.2 31 394-429 102-132 (164)
425 COG2120 Uncharacterized protei 31.4 81 0.0018 28.7 4.6 38 5-42 9-46 (237)
426 TIGR02201 heptsyl_trn_III lipo 31.4 1.3E+02 0.0028 29.0 6.4 36 99-140 252-287 (344)
427 PRK08303 short chain dehydroge 31.4 88 0.0019 29.7 5.1 32 8-42 9-40 (305)
428 PRK08339 short chain dehydroge 31.4 82 0.0018 29.0 4.8 39 1-42 1-40 (263)
429 PRK01372 ddl D-alanine--D-alan 31.3 83 0.0018 29.7 5.0 39 6-44 4-46 (304)
430 TIGR03453 partition_RepA plasm 31.3 73 0.0016 31.5 4.7 39 6-44 103-143 (387)
431 PRK08939 primosomal protein Dn 31.2 65 0.0014 30.7 4.1 44 8-51 158-201 (306)
432 COG1348 NifH Nitrogenase subun 31.1 1.1E+02 0.0023 27.9 5.0 42 6-47 1-42 (278)
433 COG0716 FldA Flavodoxins [Ener 31.1 96 0.0021 25.8 4.7 42 6-47 1-43 (151)
434 PRK06222 ferredoxin-NADP(+) re 30.9 1.1E+02 0.0024 28.6 5.6 38 8-47 100-137 (281)
435 TIGR02329 propionate_PrpR prop 30.7 2.9E+02 0.0063 28.7 8.9 110 17-141 36-172 (526)
436 TIGR02398 gluc_glyc_Psyn gluco 30.4 1.7E+02 0.0036 30.1 7.0 109 346-468 365-482 (487)
437 PF03721 UDPG_MGDP_dh_N: UDP-g 30.4 78 0.0017 27.6 4.2 33 7-44 1-33 (185)
438 PLN00141 Tic62-NAD(P)-related 30.4 1.1E+02 0.0023 28.0 5.4 34 5-42 16-49 (251)
439 PRK09590 celB cellobiose phosp 30.4 97 0.0021 24.1 4.2 37 6-42 1-37 (104)
440 PF00070 Pyr_redox: Pyridine n 30.3 76 0.0016 22.9 3.5 23 22-44 10-32 (80)
441 TIGR01915 npdG NADPH-dependent 30.3 56 0.0012 29.3 3.4 31 7-42 1-32 (219)
442 PRK00170 azoreductase; Reviewe 30.3 1E+02 0.0022 27.0 5.0 38 6-43 1-44 (201)
443 PRK04328 hypothetical protein; 30.3 4.3E+02 0.0093 24.1 11.1 43 8-50 25-67 (249)
444 PRK13604 luxD acyl transferase 30.2 1E+02 0.0022 29.4 5.1 36 6-41 36-71 (307)
445 PRK12481 2-deoxy-D-gluconate 3 30.1 98 0.0021 28.2 5.1 39 1-42 1-40 (251)
446 cd02072 Glm_B12_BD B12 binding 30.1 1E+02 0.0023 25.0 4.5 45 8-52 1-45 (128)
447 PF02780 Transketolase_C: Tran 30.1 86 0.0019 25.0 4.1 34 7-42 10-43 (124)
448 PRK06194 hypothetical protein; 30.0 1.1E+02 0.0023 28.5 5.5 38 1-42 1-38 (287)
449 PF03308 ArgK: ArgK protein; 30.0 4.6E+02 0.0099 24.4 10.2 119 6-140 29-152 (266)
450 PRK06129 3-hydroxyacyl-CoA deh 30.0 56 0.0012 31.1 3.5 33 6-43 2-34 (308)
451 PRK11914 diacylglycerol kinase 29.9 1.3E+02 0.0028 28.6 6.0 42 3-44 5-49 (306)
452 cd01983 Fer4_NifH The Fer4_Nif 29.9 1.2E+02 0.0027 22.0 4.9 33 9-41 2-34 (99)
453 COG0503 Apt Adenine/guanine ph 29.9 1E+02 0.0023 26.6 4.8 29 110-138 52-82 (179)
454 PRK04020 rps2P 30S ribosomal p 29.8 45 0.00097 29.6 2.5 32 111-142 114-147 (204)
455 COG0771 MurD UDP-N-acetylmuram 29.8 83 0.0018 31.7 4.7 35 5-44 6-40 (448)
456 PRK05653 fabG 3-ketoacyl-(acyl 29.7 1.1E+02 0.0024 27.3 5.4 20 23-42 18-37 (246)
457 COG0143 MetG Methionyl-tRNA sy 29.7 1E+02 0.0022 32.1 5.4 40 6-45 4-53 (558)
458 PRK00885 phosphoribosylamine-- 29.7 83 0.0018 31.4 4.8 30 7-41 1-31 (420)
459 PF06032 DUF917: Protein of un 29.6 49 0.0011 32.2 3.0 103 11-137 15-121 (353)
460 PRK14620 NAD(P)H-dependent gly 29.6 60 0.0013 31.2 3.7 31 7-42 1-31 (326)
461 PRK13849 putative crown gall t 29.6 94 0.002 28.2 4.7 37 8-44 3-40 (231)
462 cd00672 CysRS_core catalytic c 29.4 79 0.0017 28.3 4.1 92 16-137 35-131 (213)
463 PRK13054 lipid kinase; Reviewe 29.4 1.2E+02 0.0026 28.7 5.6 39 5-43 2-40 (300)
464 cd08806 CARD_CARD14_CARMA2 Cas 29.4 1.7E+02 0.0038 21.7 5.0 39 424-467 37-75 (86)
465 PLN02350 phosphogluconate dehy 29.0 52 0.0011 33.7 3.2 37 1-42 1-37 (493)
466 COG0467 RAD55 RecA-superfamily 29.0 1.2E+02 0.0026 28.0 5.4 45 8-52 25-69 (260)
467 PF05225 HTH_psq: helix-turn-h 28.9 69 0.0015 20.5 2.7 26 415-441 1-26 (45)
468 TIGR02114 coaB_strep phosphopa 28.8 63 0.0014 29.2 3.4 20 23-42 28-47 (227)
469 PF04244 DPRP: Deoxyribodipyri 28.7 68 0.0015 29.0 3.6 26 19-44 47-72 (224)
470 PRK05868 hypothetical protein; 28.7 85 0.0018 30.8 4.6 32 6-42 1-32 (372)
471 PRK13233 nifH nitrogenase redu 28.6 92 0.002 28.9 4.7 35 8-42 4-39 (275)
472 COG0569 TrkA K+ transport syst 28.6 69 0.0015 28.9 3.6 32 7-43 1-32 (225)
473 PRK11914 diacylglycerol kinase 28.5 2E+02 0.0043 27.3 7.0 82 285-390 12-97 (306)
474 PRK10499 PTS system N,N'-diace 28.4 1.3E+02 0.0029 23.4 4.7 37 5-41 2-38 (106)
475 KOG0023 Alcohol dehydrogenase, 28.2 1.3E+02 0.0028 28.8 5.3 42 5-51 181-223 (360)
476 PRK13394 3-hydroxybutyrate deh 28.1 1.2E+02 0.0025 27.6 5.3 33 7-42 7-39 (262)
477 PRK15461 NADH-dependent gamma- 28.1 64 0.0014 30.5 3.5 32 6-42 1-32 (296)
478 TIGR03018 pepcterm_TyrKin exop 28.0 1.3E+02 0.0029 26.5 5.4 39 6-44 34-75 (207)
479 COG1763 MobB Molybdopterin-gua 27.9 1.1E+02 0.0023 26.1 4.4 39 6-44 1-40 (161)
480 PF06506 PrpR_N: Propionate ca 27.8 47 0.001 28.6 2.3 110 18-142 17-153 (176)
481 TIGR02853 spore_dpaA dipicolin 27.8 3.6E+02 0.0078 25.4 8.4 75 282-377 151-225 (287)
482 PRK12829 short chain dehydroge 27.8 1.1E+02 0.0024 27.8 5.1 32 7-42 12-43 (264)
483 PRK02910 light-independent pro 27.8 86 0.0019 32.4 4.6 35 100-139 353-387 (519)
484 COG2086 FixA Electron transfer 27.8 1.1E+02 0.0023 28.4 4.7 41 99-141 101-147 (260)
485 PRK06079 enoyl-(acyl carrier p 27.7 1.1E+02 0.0024 27.9 5.0 33 7-42 7-41 (252)
486 COG0552 FtsY Signal recognitio 27.7 1.3E+02 0.0029 28.8 5.4 48 6-53 139-186 (340)
487 PLN02929 NADH kinase 27.7 84 0.0018 29.8 4.1 65 359-429 64-137 (301)
488 COG2230 Cfa Cyclopropane fatty 27.6 39 0.00085 31.6 1.9 39 369-407 81-121 (283)
489 PRK07806 short chain dehydroge 27.6 1.1E+02 0.0024 27.6 5.0 38 1-42 1-38 (248)
490 CHL00076 chlB photochlorophyll 27.5 86 0.0019 32.4 4.5 35 100-139 365-399 (513)
491 PF09334 tRNA-synt_1g: tRNA sy 27.5 52 0.0011 32.6 2.9 28 17-44 16-46 (391)
492 PRK06603 enoyl-(acyl carrier p 27.4 1.2E+02 0.0027 27.7 5.3 34 8-42 9-42 (260)
493 PRK07308 flavodoxin; Validated 27.4 1.1E+02 0.0023 25.3 4.4 37 5-43 2-39 (146)
494 PTZ00254 40S ribosomal protein 27.2 58 0.0013 29.8 2.8 32 111-142 118-151 (249)
495 TIGR00075 hypD hydrogenase exp 27.2 3.4E+02 0.0074 26.5 8.0 52 97-148 177-234 (369)
496 COG1553 DsrE Uncharacterized c 27.1 1.8E+02 0.0038 23.5 5.1 36 9-44 4-42 (126)
497 COG0300 DltE Short-chain dehyd 27.1 1.2E+02 0.0025 28.2 4.9 34 6-42 5-38 (265)
498 cd07038 TPP_PYR_PDC_IPDC_like 27.0 95 0.0021 26.3 4.0 27 362-388 60-92 (162)
499 TIGR00877 purD phosphoribosyla 26.9 2E+02 0.0042 28.8 7.0 34 7-45 1-34 (423)
500 KOG0541 Alkyl hydroperoxide re 26.9 1.2E+02 0.0025 25.6 4.2 39 15-54 59-97 (171)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-65 Score=507.46 Aligned_cols=441 Identities=35% Similarity=0.597 Sum_probs=343.1
Q ss_pred CCCC-CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCC
Q 011848 1 MEKQ-DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDH 79 (476)
Q Consensus 1 m~~~-~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
|+.+ +..||+++|+|++||++|++.||+.|+.+|+.|||++++.+.... .. . .+++++..+|++++++.
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~~-----~---~~~i~~~~ip~glp~~~ 70 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--SD-----D---FTDFQFVTIPESLPESD 70 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--cc-----C---CCCeEEEeCCCCCCccc
Confidence 6754 456999999999999999999999999999999999998764211 10 0 23599999998887643
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcC----CCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhh
Q 011848 80 PRTPDKFPELVDSLNCATPPLLKEMVSDS----KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (476)
.+.. ....++..+...+.+.+.++++.+ ..+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+++..
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 71 FKNL-GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred cccc-CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 2222 233455556656777788887765 23579999999999999999999999999999999888766654433
Q ss_pred hhcCC-CCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHH
Q 011848 156 IDAGE-LPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQI 234 (476)
Q Consensus 156 ~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 234 (476)
...+. .|.... . ......+|++.. +...+++..... ........+.... ...+++.+++|||.+||+.+++++
T Consensus 150 ~~~~~~~~~~~~-~-~~~~~~iPg~~~-~~~~dlp~~~~~--~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l 223 (451)
T PLN02410 150 YANNVLAPLKEP-K-GQQNELVPEFHP-LRCKDFPVSHWA--SLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRL 223 (451)
T ss_pred HhccCCCCcccc-c-cCccccCCCCCC-CChHHCcchhcC--CcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHH
Confidence 22211 121111 0 001224677665 666666653321 1122233333222 346788999999999999999999
Q ss_pred HhcCC-CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 011848 235 RNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKK 313 (476)
Q Consensus 235 ~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 313 (476)
+. .. ++++.|||++...... . ..++.+.++.+||+.++++++|||||||....+.+++.+++.+|+.++.
T Consensus 224 ~~-~~~~~v~~vGpl~~~~~~~--~------~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~ 294 (451)
T PLN02410 224 QQ-QLQIPVYPIGPLHLVASAP--T------SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQ 294 (451)
T ss_pred Hh-ccCCCEEEecccccccCCC--c------cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCC
Confidence 87 55 5899999998643211 0 1123344678999998889999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccch
Q 011848 314 SFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQ 393 (476)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ 393 (476)
+|+|+++.+...+......+|++|.|+.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 295 ~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 374 (451)
T PLN02410 295 QFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQ 374 (451)
T ss_pred CeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccC
Confidence 99999974311100111247999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 394 QINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 394 ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
+.||+++++.+|+|+.+.+.++.++|+++|+++|.+ ++++||++|+++++++++++.+||||..++++||+.++
T Consensus 375 ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 375 KVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred HHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999976669999998789999999999999973 46789999999999999999999999999999999986
No 2
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.1e-65 Score=505.23 Aligned_cols=440 Identities=28% Similarity=0.514 Sum_probs=341.8
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (476)
|+-.++.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+..... . .++++++.+|++++.+.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~---~~~i~~v~lp~g~~~~~- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----P---KLGITFMSISDGQDDDP- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----C---CCCEEEEECCCCCCCCc-
Confidence 443345699999999999999999999999999999999999887665544311 0 23599999998765421
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcC-C-CCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhc
Q 011848 81 RTPDKFPELVDSLNCATPPLLKEMVSDS-K-SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA 158 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~-~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (476)
..++..++..+...+.+.++++++.+ . .+++|||+|.+..|+..+|+++|||++.++++++.....+.+++.....
T Consensus 73 --~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 73 --PRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred --cccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 22344444555556788899999886 2 2458999999999999999999999999999988877776655443222
Q ss_pred CCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHH---
Q 011848 159 GELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIR--- 235 (476)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~--- 235 (476)
+..+.............+|++.. ++..+++.++............+.+.+....+++.+++|||.+||+..++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 229 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPL-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY 229 (448)
T ss_pred cccccccccccccccccCCCCCC-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh
Confidence 22211110001111225677765 77778877654322223345556666666677899999999999998888654
Q ss_pred --hcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccc-cCCHHHHHHHHHHHhhCC
Q 011848 236 --NHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIA-VMSRDQLIEFYYGLVHSK 312 (476)
Q Consensus 236 --~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~ 312 (476)
+ ..++++.|||++........ .+..++.+.++.+||+.++++++|||||||.. ..+.+++..++.+++.++
T Consensus 230 ~~~-~~~~v~~iGpl~~~~~~~~~-----~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g 303 (448)
T PLN02562 230 NNG-QNPQILQIGPLHNQEATTIT-----KPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASG 303 (448)
T ss_pred ccc-cCCCEEEecCcccccccccC-----CCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCC
Confidence 4 45789999999864321000 00112334567899998878899999999986 678899999999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccc
Q 011848 313 KSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFAD 392 (476)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~D 392 (476)
++|||++... ....++++|.++.++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 304 ~~fiW~~~~~------~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 377 (448)
T PLN02562 304 RPFIWVLNPV------WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGD 377 (448)
T ss_pred CCEEEEEcCC------chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccc
Confidence 9999999632 1125888999989999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 393 QQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 393 Q~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
|+.||+++++.+|+|+.+ ++++.++|.++|+++|.+ ++||+||++++++++++ ..||||.+++++||++++
T Consensus 378 Q~~na~~~~~~~g~g~~~-~~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 378 QFVNCAYIVDVWKIGVRI-SGFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred hHHHHHHHHHHhCceeEe-CCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 999999997557999888 568999999999999988 89999999999999887 567899999999999874
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.8e-65 Score=503.20 Aligned_cols=455 Identities=29% Similarity=0.540 Sum_probs=351.8
Q ss_pred CCCCC-ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhccc--cc--ccccccCCCeeEEEcCCCC
Q 011848 1 MEKQD-HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS--DA--FSRYMQIPGFQFKTLTDGL 75 (476)
Q Consensus 1 m~~~~-~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~ 75 (476)
|+|++ ..||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+... .. ... +.+.++|..+++++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~--~~~~i~~~~~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPV--GDGFIRFEFFEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccC--CCCeEEEeeCCCCC
Confidence 78764 5799999999999999999999999999999999999876655442110 00 000 01236777788887
Q ss_pred CCCCCCCCCChHHHHHHHHhhCcHHHHHHHHcC--CCC-ceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhh
Q 011848 76 PRDHPRTPDKFPELVDSLNCATPPLLKEMVSDS--KSP-VNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (476)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~-~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (476)
+.+.. ...++..++..+...+.+.++++++.+ ..+ ++|||+|.+..|+..+|+++|||++.+++++++.+..+.++
T Consensus 79 p~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 79 AEDDP-RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred CCCcc-cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 65431 123444556666656778888888865 124 49999999999999999999999999999999988877765
Q ss_pred hhhhhcCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHH
Q 011848 153 PDIIDAGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILS 232 (476)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 232 (476)
+. +..+.... ........+|++.. ++..+++.++............+.+.+....+++.+++|||.+||+.+++
T Consensus 158 ~~----~~~~~~~~-~~~~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 231 (480)
T PLN02555 158 YH----GLVPFPTE-TEPEIDVQLPCMPL-LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIID 231 (480)
T ss_pred hh----cCCCcccc-cCCCceeecCCCCC-cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 32 22222111 00011124788766 77788887654322233444555555555677889999999999999999
Q ss_pred HHHhcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCC
Q 011848 233 QIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK 312 (476)
Q Consensus 233 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 312 (476)
.++. ..+ ++.|||+........ .. ..+..+..++++.+||+.+.++++|||||||+...+.+++.+++.+++..+
T Consensus 232 ~l~~-~~~-v~~iGPl~~~~~~~~-~~--~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~ 306 (480)
T PLN02555 232 YMSK-LCP-IKPVGPLFKMAKTPN-SD--VKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSG 306 (480)
T ss_pred HHhh-CCC-EEEeCcccCcccccc-cc--ccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 9876 555 999999975321100 00 001223445679999998888899999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccc
Q 011848 313 KSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFAD 392 (476)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~D 392 (476)
++|||+++.....+......+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|+++|
T Consensus 307 ~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~D 386 (480)
T PLN02555 307 VSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGD 386 (480)
T ss_pred CeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccc
Confidence 99999987321000001125788998888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcceeeeEEec------cccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011848 393 QQINSRFVGEVWKLGLDIK------DLCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVND 465 (476)
Q Consensus 393 Q~~na~r~~e~~G~g~~~~------~~~~~~~l~~ai~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~ 465 (476)
|+.||+++++++|+|+.+. +.++.++|.++|+++|. ++|+++|+||++|++++++++.+||||..++++||++
T Consensus 387 Q~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~ 466 (480)
T PLN02555 387 QVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDK 466 (480)
T ss_pred cHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999987789999992 36899999999999996 5678999999999999999999999999999999999
Q ss_pred HHHh
Q 011848 466 IKMM 469 (476)
Q Consensus 466 l~~~ 469 (476)
++..
T Consensus 467 i~~~ 470 (480)
T PLN02555 467 LVRK 470 (480)
T ss_pred HHhc
Confidence 9865
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-64 Score=495.55 Aligned_cols=433 Identities=29% Similarity=0.533 Sum_probs=339.1
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (476)
|++++ .||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.... .+++++..+++++++...
T Consensus 1 ~~~~~-~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~---------~~~i~~~~ipdglp~~~~ 70 (449)
T PLN02173 1 MEKMR-GHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP---------SSPISIATISDGYDQGGF 70 (449)
T ss_pred CCCCC-cEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC---------CCCEEEEEcCCCCCCccc
Confidence 66654 59999999999999999999999999999999999988665543211 235999999998886432
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcC--CCCc-eEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhh
Q 011848 81 RTPDKFPELVDSLNCATPPLLKEMVSDS--KSPV-NCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIID 157 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~-D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (476)
+....+..++..+...+.+.++++++.+ ..+| +|||+|.+..|+..+|+++|||++.+++++++....+.+ ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~- 148 (449)
T PLN02173 71 SSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYIN- 148 (449)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhc-
Confidence 2333455666777767888999999875 2345 999999999999999999999999999988777655432 1110
Q ss_pred cCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhc
Q 011848 158 AGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNH 237 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (476)
. . . ....+|++.. ++..+++.++......+.....+.+.+....+++.+++|||.+||+.++++++.
T Consensus 149 ~-------~-~---~~~~~pg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~- 215 (449)
T PLN02173 149 N-------G-S---LTLPIKDLPL-LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK- 215 (449)
T ss_pred c-------C-C---ccCCCCCCCC-CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-
Confidence 0 0 0 0012456555 667777776543222333445555666666788999999999999999999976
Q ss_pred CCCCeeeeccccCcCc--cCCCccccCCCCcc--cccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 011848 238 SCPNIYSIGPLNAHLK--VRIPEKTYSSSSLW--KIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKK 313 (476)
Q Consensus 238 ~~~~~~~vGp~~~~~~--~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 313 (476)
. ++++.|||+.+... .....+....++.| ..++++.+||+.++++++|||||||....+.+++.+++.+| .+.
T Consensus 216 ~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 216 V-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred c-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 5 47999999975311 00000000001222 23456899999988899999999999999999999999999 677
Q ss_pred cEEEEEcCCCCCCCCCCCCCchHHHHHh-cCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccc
Q 011848 314 SFLWVIRPDLISGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFAD 392 (476)
Q Consensus 314 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~D 392 (476)
+|+|++..+ ....+|+++.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 293 ~flWvvr~~------~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 366 (449)
T PLN02173 293 SYLWVVRAS------EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTD 366 (449)
T ss_pred CEEEEEecc------chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhc
Confidence 899999632 1124788888777 688999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcceeeeEEec-c----ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011848 393 QQINSRFVGEVWKLGLDIK-D----LCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 466 (476)
Q Consensus 393 Q~~na~r~~e~~G~g~~~~-~----~~~~~~l~~ai~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l 466 (476)
|+.||+++++.+|+|+.+. . .++.++|.++|+++|. ++++.+|+||+++++++++++.+||||.+++++||+++
T Consensus 367 Q~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 367 QPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred chHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999987678888885 2 2699999999999997 45688999999999999999999999999999999987
Q ss_pred H
Q 011848 467 K 467 (476)
Q Consensus 467 ~ 467 (476)
+
T Consensus 447 ~ 447 (449)
T PLN02173 447 Q 447 (449)
T ss_pred c
Confidence 5
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.7e-64 Score=495.37 Aligned_cols=444 Identities=25% Similarity=0.469 Sum_probs=336.1
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCccchh-hHhhcccccccccccCCCeeEEEcCCCCCCCCC
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (476)
|++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+.. .+.......... .++++|..+|+.......
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASS---QPFVRFIDVPELEEKPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCC---CCCeEEEEeCCCCCCCcc
Confidence 4456999999999999999999999999998 9999999987652 221111000011 346999999964321110
Q ss_pred CCCCChHHHHHHHHhhC----cHHHHHHHHcC--CCC-ceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhh
Q 011848 81 RTPDKFPELVDSLNCAT----PPLLKEMVSDS--KSP-VNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIP 153 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~----~~~~~~ll~~~--~~~-~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 153 (476)
....+....+......+ .+.+.++++.. +.+ ++|||+|.++.|+..+|+++|||++.++++++.....+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 11233444443444445 33455555543 123 499999999999999999999999999999998887776654
Q ss_pred hhhhc-CCCCCCCCcccCccccccCCC-CCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHH
Q 011848 154 DIIDA-GELPIKGTEDMDRLITTVPGM-EGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPIL 231 (476)
Q Consensus 154 ~~~~~-~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 231 (476)
..... ...+.... . ....+|++ .. +...+++.++.... . ...+.+......+++.+++|||.+||++.+
T Consensus 158 ~~~~~~~~~~~~~~---~-~~~~vPgl~~~-l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 158 DRHSKDTSVFVRNS---E-EMLSIPGFVNP-VPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred hccccccccCcCCC---C-CeEECCCCCCC-CChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 32111 00111110 0 12347887 45 77888887653211 1 333444445567889999999999999999
Q ss_pred HHHH--hcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHh
Q 011848 232 SQIR--NHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLV 309 (476)
Q Consensus 232 ~~~~--~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~ 309 (476)
+..+ + ..|+++.|||++.....+.+. ... ..++++.+||+.++++++|||||||....+.+++++++.+|+
T Consensus 229 ~~~~~~~-~~p~v~~VGPl~~~~~~~~~~-----~~~-~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~ 301 (468)
T PLN02207 229 NHFLDEQ-NYPSVYAVGPIFDLKAQPHPE-----QDL-ARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLE 301 (468)
T ss_pred HHHHhcc-CCCcEEEecCCcccccCCCCc-----ccc-chhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHH
Confidence 8884 4 568899999998643211110 011 123579999998888999999999999999999999999999
Q ss_pred hCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecccc
Q 011848 310 HSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS 389 (476)
Q Consensus 310 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~ 389 (476)
.++++|||+++.+.. ...+.+|++|.++.++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 302 ~~~~~flW~~r~~~~---~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~ 378 (468)
T PLN02207 302 LCQYRFLWSLRTEEV---TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPM 378 (468)
T ss_pred HCCCcEEEEEeCCCc---cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCc
Confidence 999999999974311 11235889999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceeeeEEec--------cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011848 390 FADQQINSRFVGEVWKLGLDIK--------DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDR 461 (476)
Q Consensus 390 ~~DQ~~na~r~~e~~G~g~~~~--------~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 461 (476)
++||+.||+++++++|+|+.+. ...+.++|.++|+++|.+++++||+||+++++++++++.+||||.+++++
T Consensus 379 ~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~ 458 (468)
T PLN02207 379 YAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEK 458 (468)
T ss_pred cccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999876689999763 23599999999999997445899999999999999999999999999999
Q ss_pred HHHHHHHh
Q 011848 462 LVNDIKMM 469 (476)
Q Consensus 462 ~i~~l~~~ 469 (476)
||++++.-
T Consensus 459 ~v~~~~~~ 466 (468)
T PLN02207 459 FIHDVIGI 466 (468)
T ss_pred HHHHHHhc
Confidence 99998753
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.5e-63 Score=491.87 Aligned_cols=439 Identities=28% Similarity=0.484 Sum_probs=335.7
Q ss_pred CCCC--CccEEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCC
Q 011848 1 MEKQ--DHVHVAILPLPAVGHVNSMLNLAEL--LGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLP 76 (476)
Q Consensus 1 m~~~--~~~~il~~~~~~~GH~~p~l~La~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (476)
|+++ +..||+++|+|++||++|++.||+. |++||+.|||++++.+.+.+... +.. .+.+++..++++++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~~~------~~~~~~~~~~~glp 73 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-EKP------RRPVDLVFFSDGLP 73 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-cCC------CCceEEEECCCCCC
Confidence 5543 3569999999999999999999999 56999999999999876655321 111 23478888888777
Q ss_pred CCCCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhh
Q 011848 77 RDHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (476)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (476)
++. ......++..+.+.+.+.++++++.. +|||||+|.+..|+..+|+++|||++.+++.++..+..+.+++..
T Consensus 74 ~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~- 147 (456)
T PLN02210 74 KDD---PRAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK- 147 (456)
T ss_pred CCc---ccCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc-
Confidence 653 12344566666666777788888875 899999999999999999999999999999998888776654321
Q ss_pred hcCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHH-HHhhhhccCCEEEEcCccccchHHHHHHH
Q 011848 157 DAGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFA-RETRLSAHADGLILNTFEDLEGPILSQIR 235 (476)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 235 (476)
....+... +.. ....+|++.. +...+++..+... ......... +.......++.+++|||.+||+.+++.++
T Consensus 148 -~~~~~~~~--~~~-~~~~~Pgl~~-~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 148 -TNSFPDLE--DLN-QTVELPALPL-LEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred -cCCCCccc--ccC-CeeeCCCCCC-CChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 11111110 000 1123677665 6667777654321 122222222 22233456789999999999999999988
Q ss_pred hcCCCCeeeeccccCcCc--cCCCcc-ccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCC
Q 011848 236 NHSCPNIYSIGPLNAHLK--VRIPEK-TYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK 312 (476)
Q Consensus 236 ~~~~~~~~~vGp~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 312 (476)
. . ++++.|||+.+... ...... .......|..++++.+||+.++++++|||||||....+.+++++++.+|+.++
T Consensus 221 ~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~ 298 (456)
T PLN02210 221 D-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG 298 (456)
T ss_pred h-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 6 4 57999999975211 000000 00001234556778999998888999999999999899999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCchHHHHHh-cCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecccccc
Q 011848 313 KSFLWVIRPDLISGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA 391 (476)
Q Consensus 313 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 391 (476)
.+|||+++.+. ....+..+.++. ++|.++++|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 299 ~~flw~~~~~~------~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~ 372 (456)
T PLN02210 299 VPFLWVIRPKE------KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWT 372 (456)
T ss_pred CCEEEEEeCCc------cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99999996421 112345555555 47888889999999999999999999999999999999999999999999
Q ss_pred chhhhhHhhhcceeeeEEec-c----ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011848 392 DQQINSRFVGEVWKLGLDIK-D----LCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVND 465 (476)
Q Consensus 392 DQ~~na~r~~e~~G~g~~~~-~----~~~~~~l~~ai~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~ 465 (476)
||+.||+++++++|+|+.+. . .++.++|.++|+++|. ++|+++|+||+++++.+++++++||||.+++++||++
T Consensus 373 DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~ 452 (456)
T PLN02210 373 DQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISD 452 (456)
T ss_pred ccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999975589999995 2 5899999999999997 4467899999999999999999999999999999998
Q ss_pred HH
Q 011848 466 IK 467 (476)
Q Consensus 466 l~ 467 (476)
+.
T Consensus 453 ~~ 454 (456)
T PLN02210 453 IT 454 (456)
T ss_pred Hh
Confidence 75
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.4e-63 Score=486.42 Aligned_cols=436 Identities=28% Similarity=0.488 Sum_probs=333.7
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCccch-hhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYY-DRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. ..+.... .. .++++|+.++++++.+....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~----~~---~~~i~~~~i~dglp~g~~~~ 74 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH----NN---VENLSFLTFSDGFDDGVISN 74 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC----CC---CCCEEEEEcCCCCCCccccc
Confidence 4459999999999999999999999996 69999999998642 2211110 01 23599999998887653222
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcC--C-CCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcC
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDS--K-SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~--~-~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (476)
.......+......+.+.+.++++.+ . .+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~---- 150 (455)
T PLN02152 75 TDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG---- 150 (455)
T ss_pred cccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc----
Confidence 33455566666667888999998875 2 3459999999999999999999999999999999988877654321
Q ss_pred CCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhc--cCCEEEEcCccccchHHHHHHHhc
Q 011848 160 ELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSA--HADGLILNTFEDLEGPILSQIRNH 237 (476)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~ 237 (476)
. . ....+|++.. ++..+++.++............+.+...... .++.+++|||.+||+..+++++.
T Consensus 151 ~-----~-----~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 218 (455)
T PLN02152 151 N-----N-----SVFEFPNLPS-LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN- 218 (455)
T ss_pred C-----C-----CeeecCCCCC-CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-
Confidence 0 0 1124677765 7777888766432222222333333333222 34699999999999999998865
Q ss_pred CCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEE
Q 011848 238 SCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLW 317 (476)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 317 (476)
. +++.|||+.+...... .........++.+.++.+||+.++++++|||||||....+.+++++++.+|+.++.+|||
T Consensus 219 ~--~v~~VGPL~~~~~~~~-~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 219 I--EMVAVGPLLPAEIFTG-SESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred C--CEEEEcccCccccccc-cccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 3 6999999975321000 000000011233457999999888899999999999999999999999999999999999
Q ss_pred EEcCCCCC-CC--CC-C--CCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecccccc
Q 011848 318 VIRPDLIS-GK--DG-E--NQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA 391 (476)
Q Consensus 318 ~~~~~~~~-~~--~~-~--~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 391 (476)
++..+... .. +. . ..++++|.++.++|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99753110 00 00 0 1246889888999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHhhhcceeeeEEec---c-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011848 392 DQQINSRFVGEVWKLGLDIK---D-LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 466 (476)
Q Consensus 392 DQ~~na~r~~e~~G~g~~~~---~-~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l 466 (476)
||+.||+++++.+|+|+.+. + ..+.++|.++|+++|++++.+||+||+++++++++++.+||||++++++||+++
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999976556665553 2 469999999999999876677999999999999999999999999999999986
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-62 Score=488.69 Aligned_cols=455 Identities=24% Similarity=0.386 Sum_probs=339.1
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCC----CCCCCC
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD----GLPRDH 79 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 79 (476)
.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... . .++++++.++. +++.+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~---~~~i~~~~lp~P~~~~lPdG~ 79 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----K---HPSIETLVLPFPSHPSIPSGV 79 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----c---CCCeeEEeCCCCCcCCCCCCC
Confidence 356799999999999999999999999999999999999988766644311 0 23466665441 333332
Q ss_pred CCC---CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhh
Q 011848 80 PRT---PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (476)
Q Consensus 80 ~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (476)
... .......+......+.+.+.+++++...+++|||+|.+..|+..+|+++|||++.+++++++.+..+.++....
T Consensus 80 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 80 ENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred cChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 101 11112233334445667777777764336899999999999999999999999999999999988887654311
Q ss_pred hcCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHh
Q 011848 157 DAGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN 236 (476)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 236 (476)
+....+ ... ........+|++.. +...+++.++..............+.+.....++.+++|||.+||+.++++++.
T Consensus 160 ~~~~~~-~~~-~~~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 160 PTKINP-DDQ-NEILSFSKIPNCPK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred cccccc-ccc-ccccccCCCCCCCC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 100000 000 00111234677776 777888765543222233444444544444567889999999999999999987
Q ss_pred cCC--CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCc
Q 011848 237 HSC--PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKS 314 (476)
Q Consensus 237 ~~~--~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 314 (476)
.+ ++++.|||+.+......... ...++.+..++++.+||+.++++++|||||||....+.+++.+++.+|+.++++
T Consensus 237 -~~~~~~v~~IGPL~~~~~~~~~~~-~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 237 -ELGHDRVWAVGPILPLSGEKSGLM-ERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred -hcCCCCeEEeCCCccccccccccc-ccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 64 68999999975321000000 000011113457999999888899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCchHHHHHhc-CCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccch
Q 011848 315 FLWVIRPDLISGKDGENQIPEELLEATK-ERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQ 393 (476)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ 393 (476)
|||+++.+... ......+|++|.++.. .++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 315 flw~~~~~~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 393 (477)
T PLN02863 315 FIWCVKEPVNE-ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQ 393 (477)
T ss_pred EEEEECCCccc-ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccc
Confidence 99999743110 0011247888877664 455666999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcceeeeEEec----cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 011848 394 QINSRFVGEVWKLGLDIK----DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 469 (476)
Q Consensus 394 ~~na~r~~e~~G~g~~~~----~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~~~ 469 (476)
+.||+++++++|+|+++. ...+.+++.++|+++|. ++++||+||+++++++++++.+||||.+++++||++++..
T Consensus 394 ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~-~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 394 FVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS-ENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred hhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 999999867789999994 24689999999999995 2389999999999999999999999999999999999987
Q ss_pred cCC
Q 011848 470 SSQ 472 (476)
Q Consensus 470 ~~~ 472 (476)
+..
T Consensus 473 ~~~ 475 (477)
T PLN02863 473 GLE 475 (477)
T ss_pred ccC
Confidence 653
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.3e-62 Score=482.30 Aligned_cols=432 Identities=30% Similarity=0.516 Sum_probs=331.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCC----CCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD----GLPRDHP 80 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 80 (476)
+.||+++|+|++||++|++.||+.|+ ++|+.|||++++.+...+...... .+++++..+|+ ++++..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~-------~~~i~~~~lp~p~~~glp~~~- 76 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN-------STGVDIVGLPSPDISGLVDPS- 76 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc-------CCCceEEECCCccccCCCCCC-
Confidence 35999999999999999999999998 789999999999876554332110 22488888874 333111
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCC
Q 011848 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGE 160 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
......+......+.+.++++++++..+|+|||+|.++.|+..+|+++|||++.++++++..+....+.+.......
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 77 ---AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred ---ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 12222333344456778888888753478999999999999999999999999999999888766555443211100
Q ss_pred CCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcC--
Q 011848 161 LPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS-- 238 (476)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~-- 238 (476)
.+. ........+|++.. ++..+++..+.. ........+.+......+++.+++|||.+||+.++++++. .
T Consensus 154 ~~~----~~~~~~~~iPg~~~-l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~-~~~ 225 (481)
T PLN02992 154 EEH----TVQRKPLAMPGCEP-VRFEDTLDAYLV--PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD-PKL 225 (481)
T ss_pred ccc----ccCCCCcccCCCCc-cCHHHhhHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh-ccc
Confidence 000 00011234677766 666777653322 1223344555555556788999999999999999999874 2
Q ss_pred -----CCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 011848 239 -----CPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKK 313 (476)
Q Consensus 239 -----~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 313 (476)
.++++.|||+...... . ..++++.+||+.++++++|||||||....+.+++++++.+|+.+++
T Consensus 226 ~~~~~~~~v~~VGPl~~~~~~----------~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 226 LGRVARVPVYPIGPLCRPIQS----------S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred cccccCCceEEecCccCCcCC----------C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 1469999999753211 0 2345688999988889999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCC---------C----C-CCCCCchHHHHHhcCCcee-eeccCHHHHhCcCCCCccccccChhHHHHHH
Q 011848 314 SFLWVIRPDLISG---------K----D-GENQIPEELLEATKERGCI-AGWVPQEEVLAHSAVGGFLTHCGWNSTLESI 378 (476)
Q Consensus 314 ~~i~~~~~~~~~~---------~----~-~~~~~~~~~~~~~~~nv~~-~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal 378 (476)
+|||++..+...+ . . ....+|++|.|+..++..+ .+|+||.+||+|+++++||||||+||++||+
T Consensus 294 ~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal 373 (481)
T PLN02992 294 RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESV 373 (481)
T ss_pred CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHH
Confidence 9999996421000 0 0 0124888999888766554 5999999999999999999999999999999
Q ss_pred HhCCceeccccccchhhhhHhhhcceeeeEEec-c--ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHh--cC
Q 011848 379 VAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-D--LCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVN--KG 452 (476)
Q Consensus 379 ~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~--~~~~~~l~~ai~~~l~-~~~~~~~~~a~~l~~~~~~~~~--~~ 452 (476)
++|||||++|+++||+.||+++++++|+|+.++ . .++.++|.++|+++|. ++|+++|++|+++++++++++. +|
T Consensus 374 ~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~G 453 (481)
T PLN02992 374 VGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGG 453 (481)
T ss_pred HcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999965799999997 2 5899999999999997 4567999999999999999995 59
Q ss_pred CChHHHHHHHHHHHHH
Q 011848 453 GSSYCNLDRLVNDIKM 468 (476)
Q Consensus 453 g~~~~~~~~~i~~l~~ 468 (476)
|||.+++++||++++.
T Consensus 454 GSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 454 GVAHESLCRVTKECQR 469 (481)
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999999764
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.8e-62 Score=483.22 Aligned_cols=450 Identities=27% Similarity=0.425 Sum_probs=332.6
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC----CCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT----DGLP 76 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (476)
|....+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+...... . .+.++++.++ ++++
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~---~~~i~~~~lp~p~~dglp 74 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---L---SSSITLVSFPLPSVPGLP 74 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---C---CCCeeEEECCCCccCCCC
Confidence 4555567999999999999999999999999999999999999877665432110 0 2348888888 5676
Q ss_pred CCCCCCCCCh----HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhh
Q 011848 77 RDHPRTPDKF----PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (476)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (476)
++.. ...++ ...+......+.+.++++++.. +++|||+|.+..|+..+|+++|||++.++++++..+..+.+.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 75 SSAE-SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred CCcc-cccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 5421 11222 1244455556778888888886 899999999999999999999999999999998887776543
Q ss_pred hhhhhcCCCCCCCCcccCccccccCCCCC-CCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHH
Q 011848 153 PDIIDAGELPIKGTEDMDRLITTVPGMEG-FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPIL 231 (476)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 231 (476)
......+..+...+ .+.....++|.... .+...+++.++............+.+......+++.+++|||.+||+..+
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 152 SSLMEGGDLRSTAE-DFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred HhhhhcccCCCccc-cccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 22211121111111 11001112222211 13344566554322212222333334444456788999999999999999
Q ss_pred HHHHhcCC-CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhh
Q 011848 232 SQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVH 310 (476)
Q Consensus 232 ~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~ 310 (476)
++++. .. ++++.|||+.+......... ..+. +.++++.+||+.+.+++||||||||....+.+++.+++.+|+.
T Consensus 231 ~~l~~-~~~~~v~~VGPl~~~~~~~~~~~---~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 231 DLLSD-LYRKPIIPIGFLPPVIEDDEEDD---TIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred HHHHH-hhCCCeEEEecCCcccccccccc---cccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 99987 64 68999999975311100000 0000 1125689999988889999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceee-eccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecccc
Q 011848 311 SKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS 389 (476)
Q Consensus 311 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~ 389 (476)
++++|||++.............+|++|.++..++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 306 s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~ 385 (472)
T PLN02670 306 SETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPV 385 (472)
T ss_pred CCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcc
Confidence 99999999975311000111258999998887777764 99999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceeeeEEec-c----ccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011848 390 FADQQINSRFVGEVWKLGLDIK-D----LCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLV 463 (476)
Q Consensus 390 ~~DQ~~na~r~~e~~G~g~~~~-~----~~~~~~l~~ai~~~l~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i 463 (476)
++||+.||++++ ++|+|+.+. . .++.++|.++|+++|.+ +|++||+||+++++.+++. +...+++++|+
T Consensus 386 ~~DQ~~Na~~v~-~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~ 460 (472)
T PLN02670 386 LNEQGLNTRLLH-GKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELV 460 (472)
T ss_pred hhccHHHHHHHH-HcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHH
Confidence 999999999995 789999996 2 38999999999999974 4568999999999999984 66688999999
Q ss_pred HHHHHhc
Q 011848 464 NDIKMMS 470 (476)
Q Consensus 464 ~~l~~~~ 470 (476)
+.|+...
T Consensus 461 ~~l~~~~ 467 (472)
T PLN02670 461 HYLRENR 467 (472)
T ss_pred HHHHHhc
Confidence 9998765
No 11
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.6e-62 Score=487.30 Aligned_cols=437 Identities=30% Similarity=0.536 Sum_probs=337.0
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
...||+++|+|++||++|++.||++|+.| ||+|||++++.+...+..... .++++|+.++++++... ..
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--------~~gi~fv~lp~~~p~~~-~~ 79 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--------PDNIRFATIPNVIPSEL-VR 79 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--------CCCEEEEECCCCCCCcc-cc
Confidence 46799999999999999999999999999 999999999988776655321 23599999997665432 12
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCC
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELP 162 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (476)
..+...++..+...+.+.++++++.+..++||||+|.++.|+..+|+++|||+|.++++++..+..+.+++.....+..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 80 AADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred ccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 23444455555556777888888875336899999999999999999999999999999987777666654332222222
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCC-CC
Q 011848 163 IKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC-PN 241 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~ 241 (476)
............++|++.. +...+++.++... .....+.+.+.+....+++.+++||+.+||+.++++++. .. ++
T Consensus 160 ~~~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~~~~ 235 (459)
T PLN02448 160 VELSESGEERVDYIPGLSS-TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKS-KFPFP 235 (459)
T ss_pred CccccccCCccccCCCCCC-CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHh-hcCCc
Confidence 2211000111224677665 6666777654322 223344555555555677899999999999999999987 54 58
Q ss_pred eeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcC
Q 011848 242 IYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRP 321 (476)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 321 (476)
++.|||+........... .. ...+.+.++.+||+.+.++++|||||||....+.+++++++.+|+..+++|||++..
T Consensus 236 ~~~iGP~~~~~~~~~~~~--~~-~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSS--SS-NNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred eEEecCcccccccCCCcc--cc-ccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 999999975321100000 00 000122478899998888999999999998888999999999999999999998752
Q ss_pred CCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhh
Q 011848 322 DLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVG 401 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~ 401 (476)
+ ..++.++.++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++
T Consensus 313 ~-----------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 313 E-----------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred c-----------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 1 12344445578999999999999999999999999999999999999999999999999999999997
Q ss_pred cceeeeEEec------cccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011848 402 EVWKLGLDIK------DLCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKM 468 (476)
Q Consensus 402 e~~G~g~~~~------~~~~~~~l~~ai~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~~ 468 (476)
+.+|+|+.+. ..+++++|+++|+++|.+ ++++||+||+++++++++++.+||||.+++++||++++.
T Consensus 382 ~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 5578888874 247999999999999973 567999999999999999999999999999999999874
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.3e-62 Score=485.95 Aligned_cols=445 Identities=30% Similarity=0.498 Sum_probs=340.1
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEeCccchh----hHhhcccccccccccCCCeeEEEcCCCC
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAG----IKITFLNTEHYYD----RVIRHSSDAFSRYMQIPGFQFKTLTDGL 75 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (476)
|++.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. .+.......... .+++++..+|++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~ 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAAS---GLDIRFHHLPAVE 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccC---CCCEEEEECCCCC
Confidence 4566999999999999999999999999997 7899999876422 222211000000 1258999998754
Q ss_pred CCCCCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhh
Q 011848 76 PRDHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (476)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (476)
.+.. ......++..+...+.+.++++++.+..+++|||+|.+..|+..+|+++|||++.++++++..+..+.+++..
T Consensus 78 ~p~~---~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 PPTD---AAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred CCCc---cccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 3221 1133445555666778888888887522569999999999999999999999999999999888877765442
Q ss_pred hhcCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHH
Q 011848 156 IDAGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIR 235 (476)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 235 (476)
....-.+.. +.. ....+|++.. ++..+++.++.... +.....+........+++.+++|||.+||+..+++++
T Consensus 155 ~~~~~~~~~---~~~-~~~~iPGlp~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 155 DEEVAVEFE---EME-GAVDVPGLPP-VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred cccccCccc---ccC-cceecCCCCC-CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 111000111 111 1123677766 77788886554321 1223334444455577899999999999999999998
Q ss_pred hcC-------CCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHH
Q 011848 236 NHS-------CPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGL 308 (476)
Q Consensus 236 ~~~-------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al 308 (476)
. . .++++.|||+....... ..+..++++.+||+.+.++++|||||||....+.+++.+++.+|
T Consensus 228 ~-~~~~~~~~~~~v~~vGPl~~~~~~~---------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 228 D-GRCTPGRPAPTVYPIGPVISLAFTP---------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred h-ccccccCCCCceEEeCCCccccccC---------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 6 3 25899999998532111 11134567999999988899999999999989999999999999
Q ss_pred hhCCCcEEEEEcCCCCCC------CCCCCCCchHHHHHhcCCceee-eccCHHHHhCcCCCCccccccChhHHHHHHHhC
Q 011848 309 VHSKKSFLWVIRPDLISG------KDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAG 381 (476)
Q Consensus 309 ~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~nv~~~-~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~G 381 (476)
+.++.+|||+++.+...+ ......+|++|.++..++.+++ +|+||.+||+|+++++|||||||||++||+++|
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~G 377 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHG 377 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcC
Confidence 999999999997532110 0111247889888777766666 999999999999999999999999999999999
Q ss_pred CceeccccccchhhhhHhhhcceeeeEEec-c-----ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcC
Q 011848 382 MPMICWPSFADQQINSRFVGEVWKLGLDIK-D-----LCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKG 452 (476)
Q Consensus 382 vP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~-----~~~~~~l~~ai~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~ 452 (476)
||||++|+++||+.||+++++++|+|+.+. + ..+.++|.++|+++|.+ +++.+|++|+++++++++++.+|
T Consensus 378 VP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~g 457 (480)
T PLN00164 378 VPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEG 457 (480)
T ss_pred CCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998866789999985 2 36899999999999974 47889999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcC
Q 011848 453 GSSYCNLDRLVNDIKMMSS 471 (476)
Q Consensus 453 g~~~~~~~~~i~~l~~~~~ 471 (476)
|||.+++++||++++...-
T Consensus 458 GSS~~~l~~~v~~~~~~~~ 476 (480)
T PLN00164 458 GSSYAALQRLAREIRHGAV 476 (480)
T ss_pred CcHHHHHHHHHHHHHhccC
Confidence 9999999999999986544
No 13
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-61 Score=485.99 Aligned_cols=446 Identities=26% Similarity=0.452 Sum_probs=330.1
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCccchhhHhh-ccc-ccccccccCCCeeEEEcCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEHYYDRVIR-HSS-DAFSRYMQIPGFQFKTLTDGLPRDHPR 81 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (476)
++||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+.. ... ..... .+.++++++.+|++.+... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~~-~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSA-SSEDRLRYEVISAGDQPTT-E 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhccc-CCCCCeEEEEcCCCCCCcc-c
Confidence 45999999999999999999999999998 88999999876442210 000 00000 0023599999987654221 1
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcC---CCC-ceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhh
Q 011848 82 TPDKFPELVDSLNCATPPLLKEMVSDS---KSP-VNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIID 157 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~-~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (476)
. ..+...+..+.....+.+++++... ..+ .+|||+|.++.|+..+|+++|||++.++++++..+..+.+++....
T Consensus 80 ~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~ 158 (481)
T PLN02554 80 D-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYD 158 (481)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcc
Confidence 1 1222223333333344444444332 113 3899999999999999999999999999999999888777654322
Q ss_pred cCCCCCCCCcccCccccccCCCC-CCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHh
Q 011848 158 AGELPIKGTEDMDRLITTVPGME-GFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN 236 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 236 (476)
..-.+.... ........+|++. . ++..+++..+.. ......+.+......+++.+++|++.+||......+++
T Consensus 159 ~~~~~~~~~-~~~~~~v~iPgl~~p-l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 159 EKKYDVSEL-EDSEVELDVPSLTRP-YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred ccccCcccc-CCCCceeECCCCCCC-CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 111111110 0000112467763 4 666677765432 12344455555556788999999999999999998885
Q ss_pred c--CCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCc
Q 011848 237 H--SCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKS 314 (476)
Q Consensus 237 ~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 314 (476)
. ..|+++.|||+......... .....++++.+||+.++++++|||||||+...+.+++.+++.+++.++++
T Consensus 233 ~~~~~~~v~~vGpl~~~~~~~~~-------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 233 SSGDLPPVYPVGPVLHLENSGDD-------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred cccCCCCEEEeCCCccccccccc-------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 1 23789999999532111000 00123457999999888889999999999989999999999999999999
Q ss_pred EEEEEcCCCCC----CC----CCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceec
Q 011848 315 FLWVIRPDLIS----GK----DGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMIC 386 (476)
Q Consensus 315 ~i~~~~~~~~~----~~----~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~ 386 (476)
|||+++.+... +. .....+|++|.++.++|+++++|+||.+||.|+++++|||||||||++||+++|||||+
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~ 385 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA 385 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEe
Confidence 99999752110 00 01123689999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhHhhhcceeeeEEec------------cccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCC
Q 011848 387 WPSFADQQINSRFVGEVWKLGLDIK------------DLCDRNIVEKAVNDLMV-ERKEEFMESADRMANLAKKSVNKGG 453 (476)
Q Consensus 387 ~P~~~DQ~~na~r~~e~~G~g~~~~------------~~~~~~~l~~ai~~~l~-~~~~~~~~~a~~l~~~~~~~~~~~g 453 (476)
+|+++||+.||+++++++|+|+.++ +.++.++|.++|+++|+ | ++||+||+++++++++++.+||
T Consensus 386 ~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 386 WPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred cCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999965437899999985 25899999999999996 6 8999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh
Q 011848 454 SSYCNLDRLVNDIKMM 469 (476)
Q Consensus 454 ~~~~~~~~~i~~l~~~ 469 (476)
|+.+++++||++++.+
T Consensus 464 ss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 464 SSHTALKKFIQDVTKN 479 (481)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999999999865
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=7.2e-61 Score=470.73 Aligned_cols=439 Identities=24% Similarity=0.407 Sum_probs=333.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCccchhhHhhcc-cccccccccCCCeeEEEcCCCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYDRVIRHS-SDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (476)
..||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+.... ...... .+++++..+|+....+-....
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA---RTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC---CCceEEEECCCCccccCCCCC
Confidence 4499999999999999999999999987 99999999876554331110 100000 124889988853322100000
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCc-eEEEecchhhHHHHHhhhhhhhhcCCCC
Q 011848 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVS-IIYFRTISACAFWSFHCIPDIIDAGELP 162 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (476)
......+......+.+.++++++.+..+++|||+|.++.|+..+|+++||| .+.+++++++....+.+++.... ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~~~ 157 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--VVE 157 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--ccc
Confidence 133334444555788899999987633789999999999999999999999 57777777777666655543211 101
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcC----
Q 011848 163 IKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS---- 238 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~---- 238 (476)
.... ... ....+|++.. +...+++..+... .......+.+.+....+++.+++|||.+||+..++.++. .
T Consensus 158 ~~~~-~~~-~~~~vPg~p~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~-~~~~~ 231 (470)
T PLN03015 158 GEYV-DIK-EPLKIPGCKP-VGPKELMETMLDR--SDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRE-DMELN 231 (470)
T ss_pred cccC-CCC-CeeeCCCCCC-CChHHCCHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh-hcccc
Confidence 0000 011 1124788876 7778887644321 122233444555556789999999999999999999986 4
Q ss_pred ---CCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcE
Q 011848 239 ---CPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSF 315 (476)
Q Consensus 239 ---~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 315 (476)
.++++.|||+...... . +.++++.+||+.+.++++|||||||....+.+++.+++.+|+.++++|
T Consensus 232 ~~~~~~v~~VGPl~~~~~~----------~--~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~F 299 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTNVH----------V--EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRF 299 (470)
T ss_pred cccCCceEEecCCCCCccc----------c--cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcE
Confidence 2569999999842110 0 123469999998888999999999999999999999999999999999
Q ss_pred EEEEcCCCCC-C-----C-CCCCCCchHHHHHhcCCceee-eccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecc
Q 011848 316 LWVIRPDLIS-G-----K-DGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 387 (476)
Q Consensus 316 i~~~~~~~~~-~-----~-~~~~~~~~~~~~~~~~nv~~~-~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 387 (476)
||++..+... + . ...+.+|++|.++..++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 300 lWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~ 379 (470)
T PLN03015 300 VWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAW 379 (470)
T ss_pred EEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEec
Confidence 9999642110 0 0 011258899998887777654 999999999999999999999999999999999999999
Q ss_pred ccccchhhhhHhhhcceeeeEEec-----cccCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 011848 388 PSFADQQINSRFVGEVWKLGLDIK-----DLCDRNIVEKAVNDLMV---ERKEEFMESADRMANLAKKSVNKGGSSYCNL 459 (476)
Q Consensus 388 P~~~DQ~~na~r~~e~~G~g~~~~-----~~~~~~~l~~ai~~~l~---~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 459 (476)
|+++||+.||+++++++|+|+++. +.++.++|.++|+++|. ++|+++|+||+++++++++++.+||||.+++
T Consensus 380 P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl 459 (470)
T PLN03015 380 PLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSL 459 (470)
T ss_pred ccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999977899999994 26899999999999994 5689999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011848 460 DRLVNDIK 467 (476)
Q Consensus 460 ~~~i~~l~ 467 (476)
++|+.+++
T Consensus 460 ~~~~~~~~ 467 (470)
T PLN03015 460 FEWAKRCY 467 (470)
T ss_pred HHHHHhcc
Confidence 99998864
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-60 Score=468.02 Aligned_cols=432 Identities=24% Similarity=0.394 Sum_probs=325.0
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC--CCCCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT--DGLPRD 78 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (476)
|++++ +||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... .+. .-.+.+..+| ++++++
T Consensus 1 ~~~~~-~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~--~~~---~~~v~~~~~p~~~glp~g 74 (453)
T PLN02764 1 MGGLK-FHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNL--FPH---NIVFRSVTVPHVDGLPVG 74 (453)
T ss_pred CCCCC-cEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccccc--CCC---CceEEEEECCCcCCCCCc
Confidence 66664 699999999999999999999999999999999999987655443210 000 0126777777 566654
Q ss_pred CCCC---CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhh
Q 011848 79 HPRT---PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (476)
Q Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (476)
.... .......+......+.+.+.++++.. ++||||+|+ ..|+..+|+++|||++.++++++..+..+.. +.
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~- 149 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG- 149 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc-
Confidence 2111 11111223334445678888888886 889999995 7899999999999999999999887776542 11
Q ss_pred hhcCCCCCCCCcccCccccccCCCCC---CCCCCCCCCccc--CCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHH
Q 011848 156 IDAGELPIKGTEDMDRLITTVPGMEG---FLRCRDLPSFCR--VNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPI 230 (476)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 230 (476)
...+ ...|++.. .++..+++.+.. .....+.......+.......++.+++|||.+||+.+
T Consensus 150 ---~~~~-----------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~ 215 (453)
T PLN02764 150 ---GELG-----------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNF 215 (453)
T ss_pred ---ccCC-----------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHH
Confidence 1100 00123321 033344443211 1011111222222222445678899999999999999
Q ss_pred HHHHHhcCC-CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHh
Q 011848 231 LSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLV 309 (476)
Q Consensus 231 ~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~ 309 (476)
+++++. .. ++++.|||+.+..... ...++++.+|||.+++++||||||||....+.+++.+++.+|+
T Consensus 216 ~~~~~~-~~~~~v~~VGPL~~~~~~~-----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~ 283 (453)
T PLN02764 216 CDYIEK-HCRKKVLLTGPVFPEPDKT-----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGME 283 (453)
T ss_pred HHHHHh-hcCCcEEEeccCccCcccc-----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 999987 54 5799999997532100 0124579999999999999999999999999999999999999
Q ss_pred hCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceee-eccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccc
Q 011848 310 HSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWP 388 (476)
Q Consensus 310 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P 388 (476)
..+.+|+|++..+.... .....+|++|.++..++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 284 ~s~~pflwv~r~~~~~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P 362 (453)
T PLN02764 284 LTGSPFLVAVKPPRGSS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP 362 (453)
T ss_pred hCCCCeEEEEeCCCCCc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 99999999997431110 012358999998877777665 9999999999999999999999999999999999999999
Q ss_pred cccchhhhhHhhhcceeeeEEec-c---ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011848 389 SFADQQINSRFVGEVWKLGLDIK-D---LCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNLDR 461 (476)
Q Consensus 389 ~~~DQ~~na~r~~e~~G~g~~~~-~---~~~~~~l~~ai~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 461 (476)
+++||+.||+++++.+|+|+.+. + .++.++|.++|+++|++ +++++|++|+++++++++ +|||.+++++
T Consensus 363 ~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~ 438 (453)
T PLN02764 363 QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDN 438 (453)
T ss_pred cccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Confidence 99999999999976789999985 2 58999999999999963 467799999999999976 7999999999
Q ss_pred HHHHHHHhcCCCC
Q 011848 462 LVNDIKMMSSQPQ 474 (476)
Q Consensus 462 ~i~~l~~~~~~~~ 474 (476)
||++++.....++
T Consensus 439 lv~~~~~~~~~~~ 451 (453)
T PLN02764 439 FIESLQDLVSGTS 451 (453)
T ss_pred HHHHHHHhccccc
Confidence 9999998877654
No 16
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-61 Score=475.66 Aligned_cols=447 Identities=30% Similarity=0.485 Sum_probs=328.1
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC-----CCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT-----DGLPRDHP 80 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 80 (476)
..||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.......... ...++|+.+| ++++++..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~---~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARES---GLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhcccc---CCCeEEEEcCCCCccCCCCCCcc
Confidence 469999999999999999999999999999999999998766554432100000 1138888887 57765421
Q ss_pred CCC--C--ChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhh
Q 011848 81 RTP--D--KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDII 156 (476)
Q Consensus 81 ~~~--~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (476)
... . .+...+......+.+.+.++++....+++|||+|.+..|+..+|+++|||++.+++++++....+.++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 111 1 122223333445677888888764347899999999999999999999999999999988776554322111
Q ss_pred hcCCCCCCCCcccCccccccCCCCC--CCCCCCCCCcccCCCCCChHHHHHHHHhh-hhccCCEEEEcCccccchHHHHH
Q 011848 157 DAGELPIKGTEDMDRLITTVPGMEG--FLRCRDLPSFCRVNDPMDPHLLLFARETR-LSAHADGLILNTFEDLEGPILSQ 233 (476)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~ 233 (476)
+ ..+.... . ....+|++.. .+...+++..+... .....+.+.+. ....++.+++|||.+||+.++++
T Consensus 165 ~--~~~~~~~-~---~~~~iPg~p~~~~l~~~dlp~~~~~~----~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 165 A--HLSVSSD-S---EPFVVPGMPQSIEITRAQLPGAFVSL----PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred c--cccCCCC-C---ceeecCCCCccccccHHHCChhhcCc----ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 1 1111111 0 1123455432 14555565543211 11222333332 22356799999999999999999
Q ss_pred HHhcCC-CCeeeeccccCcCccCCCccccCCCCccc-ccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC
Q 011848 234 IRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWK-IDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS 311 (476)
Q Consensus 234 ~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~ 311 (476)
++. .. ++++.|||+........+.. . .+.... +++++.+||+.+.++++|||||||.....++++.+++.+|+.+
T Consensus 235 l~~-~~~~~v~~VGPL~~~~~~~~~~~-~-~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~ 311 (491)
T PLN02534 235 YEK-AIKKKVWCVGPVSLCNKRNLDKF-E-RGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEAS 311 (491)
T ss_pred HHh-hcCCcEEEECccccccccccccc-c-cCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhC
Confidence 987 55 68999999975321100000 0 001111 2356899999988899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCCC-CCchHHHHHh-cCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecccc
Q 011848 312 KKSFLWVIRPDLISGKDGEN-QIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS 389 (476)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~-~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~ 389 (476)
+.+|||+++.+... ....+ .+|++|.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 312 ~~~flW~~r~~~~~-~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 312 KKPFIWVIKTGEKH-SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred CCCEEEEEecCccc-cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccc
Confidence 99999999742110 00011 3578888774 466667799999999999999999999999999999999999999999
Q ss_pred ccchhhhhHhhhcceeeeEEec-c-------------ccCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHhcC
Q 011848 390 FADQQINSRFVGEVWKLGLDIK-D-------------LCDRNIVEKAVNDLMV---ERKEEFMESADRMANLAKKSVNKG 452 (476)
Q Consensus 390 ~~DQ~~na~r~~e~~G~g~~~~-~-------------~~~~~~l~~ai~~~l~---~~~~~~~~~a~~l~~~~~~~~~~~ 452 (476)
++||+.||++++|.+|+|+++. . ..+.++|.++|+++|. ++|+++|+||++|++++++++.+|
T Consensus 391 ~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~G 470 (491)
T PLN02534 391 FAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELG 470 (491)
T ss_pred cccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999988999999873 1 2789999999999995 567899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHh
Q 011848 453 GSSYCNLDRLVNDIKMM 469 (476)
Q Consensus 453 g~~~~~~~~~i~~l~~~ 469 (476)
|||.+++++||++++..
T Consensus 471 GSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 471 GSSHINLSILIQDVLKQ 487 (491)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999999753
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.5e-61 Score=471.66 Aligned_cols=430 Identities=28% Similarity=0.506 Sum_probs=321.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCC-C
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAG--IKITF--LNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP-R 81 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (476)
-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.......... .++++++.+|++.+.... .
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSS---FPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCC---CCCeEEEEcCCCCCCCCccc
Confidence 3999999999999999999999999998 55665 44443222222110000011 346999999976532211 1
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcC-C-CCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcC
Q 011848 82 TPDKFPELVDSLNCATPPLLKEMVSDS-K-SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~-~-~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (476)
........+......+.+.+.++++++ . .+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~- 159 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET- 159 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc-
Confidence 112233333334446777888888876 2 3459999999999999999999999999999999998887765532111
Q ss_pred CCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCC
Q 011848 160 ELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC 239 (476)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (476)
.+.....+ .....+|++.. ++..+++.++... .+.....+.+......+++.+++|||.+||+.++++++. ..
T Consensus 160 -~~~~~~~~--~~~v~iPg~p~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~-~~ 232 (451)
T PLN03004 160 -TPGKNLKD--IPTVHIPGVPP-MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE-EL 232 (451)
T ss_pred -cccccccc--CCeecCCCCCC-CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh-cC
Confidence 11110000 01224677766 7778888765432 222334445555556778899999999999999999987 52
Q ss_pred --CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEE
Q 011848 240 --PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLW 317 (476)
Q Consensus 240 --~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 317 (476)
++++.|||+....... . +.. ..+.++.+||+.++++++|||||||....+.+++++++.+|+.++++|||
T Consensus 233 ~~~~v~~vGPl~~~~~~~--~-----~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIE--D-----RND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCEEEEeeeccCcccc--c-----ccc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 5899999997532100 0 011 12356899999888899999999999999999999999999999999999
Q ss_pred EEcCCCCCCC---CCCCCCchHHHHHhcC-CceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccch
Q 011848 318 VIRPDLISGK---DGENQIPEELLEATKE-RGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQ 393 (476)
Q Consensus 318 ~~~~~~~~~~---~~~~~~~~~~~~~~~~-nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ 393 (476)
+++.+..... ..+..+|++|.++..+ |+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||
T Consensus 305 ~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ 384 (451)
T PLN03004 305 VVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ 384 (451)
T ss_pred EEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc
Confidence 9984311000 0111378899888765 55667999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhcceeeeEEec-c---ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011848 394 QINSRFVGEVWKLGLDIK-D---LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYC 457 (476)
Q Consensus 394 ~~na~r~~e~~G~g~~~~-~---~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 457 (476)
+.||+++++++|+|++++ . .++.++|.++|+++|++ ++||++|++++++.+.++.+||||.+
T Consensus 385 ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 385 RFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999965689999996 2 57999999999999998 89999999999999999999999864
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.4e-60 Score=478.82 Aligned_cols=448 Identities=28% Similarity=0.483 Sum_probs=318.7
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCC----CeeEEEcC---C
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIP----GFQFKTLT---D 73 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~ 73 (476)
|.+. +.||+++|+|++||++|++.||+.|+.|||+|||++++.+...+.......... .+ .+.+..+| +
T Consensus 1 ~~~~-~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~---~~~~~~~~~~~~~p~~~~ 76 (482)
T PLN03007 1 MNHE-KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNL---NPGLEIDIQIFNFPCVEL 76 (482)
T ss_pred CCCC-CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhccc---CCCCcceEEEeeCCCCcC
Confidence 4443 579999999999999999999999999999999999998876555432111000 11 34455555 3
Q ss_pred CCCCCCCCC-------CCChHHHHH---HHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchh
Q 011848 74 GLPRDHPRT-------PDKFPELVD---SLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 74 ~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~ 143 (476)
+++.+.... ......++. .....+.+.++++++.. +||+||+|.++.|+..+|+++|||++.++++++
T Consensus 77 glP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a 154 (482)
T PLN03007 77 GLPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGY 154 (482)
T ss_pred CCCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccH
Confidence 555431101 001112222 22234555566666554 899999999999999999999999999999988
Q ss_pred hHHHHHhhhhhhhhcCCCCCCCCcccCccccccCCCCC--CCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEc
Q 011848 144 CAFWSFHCIPDIIDAGELPIKGTEDMDRLITTVPGMEG--FLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILN 221 (476)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (476)
+............+....+ .. . ....+|++.. .+...+++.. ...........+..+...+++.+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~--~~--~--~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~N 224 (482)
T PLN03007 155 FSLCASYCIRVHKPQKKVA--SS--S--EPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVN 224 (482)
T ss_pred HHHHHHHHHHhcccccccC--CC--C--ceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEE
Confidence 7766655432211111111 00 0 0111344431 1222333321 11122233333444455778899999
Q ss_pred CccccchHHHHHHHhcCC-CCeeeeccccCcCccCCCccccCCC-CcccccchhhhhhhcCCCCceEEEEecccccCCHH
Q 011848 222 TFEDLEGPILSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSS-SLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRD 299 (476)
Q Consensus 222 s~~~le~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~ 299 (476)
++.+||++..+.+++ .. .++++|||+........... ..+ ..+..++++.+||+.++++++|||||||....+.+
T Consensus 225 t~~~le~~~~~~~~~-~~~~~~~~VGPl~~~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~ 301 (482)
T PLN03007 225 SFYELESAYADFYKS-FVAKRAWHIGPLSLYNRGFEEKA--ERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNE 301 (482)
T ss_pred CHHHHHHHHHHHHHh-ccCCCEEEEcccccccccccccc--ccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHH
Confidence 999999999999987 55 47999999865322100000 000 11123467899999888899999999999988899
Q ss_pred HHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHh-cCCceeeeccCHHHHhCcCCCCccccccChhHHHHHH
Q 011848 300 QLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEAT-KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESI 378 (476)
Q Consensus 300 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal 378 (476)
++.+++.+|+.++++|||+++.+.... .....+|++|.++. +.|+++.+|+||.+||+|+++++||||||+||++||+
T Consensus 302 ~~~~~~~~l~~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal 380 (482)
T PLN03007 302 QLFEIAAGLEGSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGV 380 (482)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHH
Confidence 999999999999999999997531100 01124788888765 5677778999999999999999999999999999999
Q ss_pred HhCCceeccccccchhhhhHhhhcceeeeEEe--------c-cccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHH
Q 011848 379 VAGMPMICWPSFADQQINSRFVGEVWKLGLDI--------K-DLCDRNIVEKAVNDLMVE-RKEEFMESADRMANLAKKS 448 (476)
Q Consensus 379 ~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~--------~-~~~~~~~l~~ai~~~l~~-~~~~~~~~a~~l~~~~~~~ 448 (476)
++|||||++|+++||+.||+++++.+++|+.+ + ..++.++|.++|+++|.+ ++++||+||+++++.++++
T Consensus 381 ~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 381 AAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAA 460 (482)
T ss_pred HcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886544555443 3 468999999999999985 3559999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHH
Q 011848 449 VNKGGSSYCNLDRLVNDIKM 468 (476)
Q Consensus 449 ~~~~g~~~~~~~~~i~~l~~ 468 (476)
+.+||||++++++||+.++.
T Consensus 461 ~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 461 VEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HhCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.6e-61 Score=478.67 Aligned_cols=442 Identities=25% Similarity=0.416 Sum_probs=324.9
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCC---EEEEEeCccchh-----hHhhcccccccccccCCCeeEEEcCCCCC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGI---KITFLNTEHYYD-----RVIRHSSDAFSRYMQIPGFQFKTLTDGLP 76 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH---~Vt~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (476)
.+.||+++|+|++||++|++.||+.|+.+|. .||++++..+.. .+.... .. .++++|+.+|++..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~----~~---~~~i~~~~lp~~~~ 74 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLI----AS---EPRIRLVTLPEVQD 74 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcc----cC---CCCeEEEECCCCCC
Confidence 3459999999999999999999999999983 567776543221 111110 01 34699999986542
Q ss_pred CCCCCC-CCChHHHHHHHHhhCcHHHHHHHHcC-C------C-CceEEEecCCcccHHHHHHHhCCceEEEecchhhHHH
Q 011848 77 RDHPRT-PDKFPELVDSLNCATPPLLKEMVSDS-K------S-PVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFW 147 (476)
Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~-~------~-~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 147 (476)
+...+. .......+..+...+.+.+++.++++ . . +++|||+|.+..|+..+|+++|||++.+++++++.+.
T Consensus 75 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 75 PPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 211010 11111233334444555566665544 1 1 4599999999999999999999999999999998887
Q ss_pred HHhhhhhhhhcCCCCCCCCcccCccccccCCC-CCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCcccc
Q 011848 148 SFHCIPDIIDAGELPIKGTEDMDRLITTVPGM-EGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDL 226 (476)
Q Consensus 148 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 226 (476)
.+.+.+............. ... ....+|++ .. +...+++...... .......+.+....+++.+++|||.+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~iPgl~~~-l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLS-SGE-EELPIPGFVNS-VPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHhccccccccccC-CCC-CeeECCCCCCC-CChhhCchhhhCc----chHHHHHHHHHhhcccCEeeeccHHHH
Confidence 7765543211100000000 000 11236776 34 6666666543221 112334444455577899999999999
Q ss_pred chHHHHHHHhcC---CCCeeeeccccCcCccCCCccccCCCCcc-cccchhhhhhhcCCCCceEEEEecccccCCHHHHH
Q 011848 227 EGPILSQIRNHS---CPNIYSIGPLNAHLKVRIPEKTYSSSSLW-KIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLI 302 (476)
Q Consensus 227 e~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~ 302 (476)
|+..+++++. . .|+++.|||+.+....... ..+ ..+.++.+||+.++.+++|||||||+...+..++.
T Consensus 228 E~~~~~~l~~-~~~~~p~v~~vGpl~~~~~~~~~-------~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ 299 (475)
T PLN02167 228 EPNAFDYFSR-LPENYPPVYPVGPILSLKDRTSP-------NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIK 299 (475)
T ss_pred HHHHHHHHHh-hcccCCeeEEeccccccccccCC-------CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHH
Confidence 9999999875 4 4789999999864321100 000 12357999999888889999999999888999999
Q ss_pred HHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCC
Q 011848 303 EFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGM 382 (476)
Q Consensus 303 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~Gv 382 (476)
+++.+++.++++|||+++.+..........+|++|.|+..+++++++|+||.+||+|+++++|||||||||++||+++||
T Consensus 300 ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 300 EIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred HHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 99999999999999999743110000122488999988888899999999999999999999999999999999999999
Q ss_pred ceeccccccchhhhhHhhhcceeeeEEec-c-------ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCC
Q 011848 383 PMICWPSFADQQINSRFVGEVWKLGLDIK-D-------LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGS 454 (476)
Q Consensus 383 P~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~-------~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~ 454 (476)
|||++|+++||+.||+++.+++|+|+.+. . .++.++|.++|+++|.++ +.||+||+++++++++++.+|||
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred CEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999987446899999885 2 469999999999999741 48999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 011848 455 SYCNLDRLVNDIKMM 469 (476)
Q Consensus 455 ~~~~~~~~i~~l~~~ 469 (476)
|.+++++||++++..
T Consensus 459 S~~~l~~~v~~i~~~ 473 (475)
T PLN02167 459 SFVAVKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-60 Score=470.39 Aligned_cols=419 Identities=22% Similarity=0.368 Sum_probs=314.0
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEc--C--CCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTL--T--DGLP 76 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 76 (476)
|+. +.||+++|+|++||++|++.||+.|+.+||+|||++++.+...+..... . .+.+++..+ + ++++
T Consensus 1 ~~~--~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a--~-----~~~i~~~~l~~p~~dgLp 71 (442)
T PLN02208 1 MEP--KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL--F-----PDSIVFHPLTIPPVNGLP 71 (442)
T ss_pred CCC--CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC--C-----CCceEEEEeCCCCccCCC
Confidence 444 5699999999999999999999999999999999999877666544321 0 113555544 3 4555
Q ss_pred CCCCCCCCC----hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhh
Q 011848 77 RDHPRTPDK----FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (476)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (476)
.+.. .... +...+........+.++++++.+ ++||||+| ++.|+..+|+++|||++.++++++.... +.+.
T Consensus 72 ~g~~-~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~ 146 (442)
T PLN02208 72 AGAE-TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHV 146 (442)
T ss_pred CCcc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHcc
Confidence 4421 1112 22234444555777788888876 89999999 5789999999999999999999887653 3332
Q ss_pred hhhhhcCCCCCCCCcccCccccccCCCCC---CCCCCCCCCcccCCCCCChHHHHHHHHh-hhhccCCEEEEcCccccch
Q 011848 153 PDIIDAGELPIKGTEDMDRLITTVPGMEG---FLRCRDLPSFCRVNDPMDPHLLLFARET-RLSAHADGLILNTFEDLEG 228 (476)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~ 228 (476)
+. ... .. .+|++.. .++..+++.+. ..........+.+ ....+++.+++|||.+||+
T Consensus 147 ~~----~~~--------~~---~~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~ 207 (442)
T PLN02208 147 PG----GKL--------GV---PPPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEG 207 (442)
T ss_pred Cc----ccc--------CC---CCCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHH
Confidence 21 000 00 0233322 13344455321 1112233333222 3446789999999999999
Q ss_pred HHHHHHHhcCC-CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHH
Q 011848 229 PILSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYG 307 (476)
Q Consensus 229 ~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 307 (476)
.++++++. .. ++++.|||++...... .+.++++.+||+.+.++++|||||||....+.+++.+++.+
T Consensus 208 ~~~~~~~~-~~~~~v~~vGpl~~~~~~~-----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~ 275 (442)
T PLN02208 208 KFCDYISR-QYHKKVLLTGPMFPEPDTS-----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLG 275 (442)
T ss_pred HHHHHHHh-hcCCCEEEEeecccCcCCC-----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHH
Confidence 99999876 54 7899999998643210 02356799999988889999999999998899999999988
Q ss_pred HhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcC-CceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceec
Q 011848 308 LVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKE-RGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMIC 386 (476)
Q Consensus 308 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~ 386 (476)
++..+.+++|+++.+... ......+|++|.++..+ |+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 276 l~~s~~pf~wv~r~~~~~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~ 354 (442)
T PLN02208 276 MELTGLPFLIAVKPPRGS-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVL 354 (442)
T ss_pred HHhCCCcEEEEEeCCCcc-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEe
Confidence 888888888888743100 00113588999887654 5556699999999999999999999999999999999999999
Q ss_pred cccccchhhhhHhhhcceeeeEEec-cc---cCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 011848 387 WPSFADQQINSRFVGEVWKLGLDIK-DL---CDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCNL 459 (476)
Q Consensus 387 ~P~~~DQ~~na~r~~e~~G~g~~~~-~~---~~~~~l~~ai~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 459 (476)
+|+++||+.||+++++++|+|+.++ .+ ++.++|.++|+++|++ +|+.+|++|+++++.+.+ +|||.+++
T Consensus 355 ~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l 430 (442)
T PLN02208 355 IPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYV 430 (442)
T ss_pred cCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHH
Confidence 9999999999999866699999997 33 8999999999999963 467899999999999865 68999999
Q ss_pred HHHHHHHHHh
Q 011848 460 DRLVNDIKMM 469 (476)
Q Consensus 460 ~~~i~~l~~~ 469 (476)
++||++++..
T Consensus 431 ~~~v~~l~~~ 440 (442)
T PLN02208 431 DKFVEELQEY 440 (442)
T ss_pred HHHHHHHHHh
Confidence 9999999653
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.8e-59 Score=461.43 Aligned_cols=420 Identities=24% Similarity=0.356 Sum_probs=314.1
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC----CCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT----DGLP 76 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (476)
|.+ +.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+...... .+.++|..++ ++++
T Consensus 1 ~~~--~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~-------~~~i~~~~i~lP~~dGLP 71 (446)
T PLN00414 1 MGS--KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLF-------PDSIVFEPLTLPPVDGLP 71 (446)
T ss_pred CCC--CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccC-------CCceEEEEecCCCcCCCC
Confidence 444 45999999999999999999999999999999999998876555433210 1247775543 5666
Q ss_pred CCCCCCCCCh----HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhh
Q 011848 77 RDHPRTPDKF----PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCI 152 (476)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (476)
++. +...++ ...+........+.++++++.. +|||||+|. +.|+..+|+++|||++.++++++.....+.+
T Consensus 72 ~g~-e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~- 146 (446)
T PLN00414 72 FGA-ETASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA- 146 (446)
T ss_pred Ccc-cccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-
Confidence 542 111122 2233334445666677777665 899999995 7899999999999999999999988776654
Q ss_pred hhhhhcCCCCCCCCcccCccccccCCCCC---CCCCCC--CCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccc
Q 011848 153 PDIIDAGELPIKGTEDMDRLITTVPGMEG---FLRCRD--LPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLE 227 (476)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le 227 (476)
+.. .... | .|++.. .+...+ ++.++.. ....+.+......+++.+++|||.+||
T Consensus 147 ~~~-~~~~-~-------------~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE 205 (446)
T PLN00414 147 PRA-ELGF-P-------------PPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELE 205 (446)
T ss_pred cHh-hcCC-C-------------CCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHH
Confidence 210 0000 0 122111 011111 1111110 112333344455678999999999999
Q ss_pred hHHHHHHHhcCC-CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHH
Q 011848 228 GPILSQIRNHSC-PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYY 306 (476)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 306 (476)
+.++++++. .. ++++.|||+.+..... .....++++.+|||.+++++||||||||......+++.+++.
T Consensus 206 ~~~~~~~~~-~~~~~v~~VGPl~~~~~~~---------~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~ 275 (446)
T PLN00414 206 GNLCDFIER-QCQRKVLLTGPMLPEPQNK---------SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCL 275 (446)
T ss_pred HHHHHHHHH-hcCCCeEEEcccCCCcccc---------cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHH
Confidence 999999987 64 5799999997532110 000123568899999999999999999999999999999999
Q ss_pred HHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceee-eccCHHHHhCcCCCCccccccChhHHHHHHHhCCcee
Q 011848 307 GLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMI 385 (476)
Q Consensus 307 al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l 385 (476)
+|+..+.+|+|++..+...+ ...+.+|++|.++..++.+++ +|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 276 gL~~s~~~Flwvvr~~~~~~-~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l 354 (446)
T PLN00414 276 GMELTGLPFLIAVMPPKGSS-TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIV 354 (446)
T ss_pred HHHHcCCCeEEEEecCCCcc-cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEE
Confidence 99999999999997531110 112358999999988888876 9999999999999999999999999999999999999
Q ss_pred ccccccchhhhhHhhhcceeeeEEec-c---ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011848 386 CWPSFADQQINSRFVGEVWKLGLDIK-D---LCDRNIVEKAVNDLMVE---RKEEFMESADRMANLAKKSVNKGGSSYCN 458 (476)
Q Consensus 386 ~~P~~~DQ~~na~r~~e~~G~g~~~~-~---~~~~~~l~~ai~~~l~~---~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 458 (476)
++|+++||+.||+++++++|+|+.+. . .++.++|.++++++|.+ +++++|++|+++++.+.++ ||++ ..
T Consensus 355 ~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~---gg~s-s~ 430 (446)
T PLN00414 355 FIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP---GLLS-GY 430 (446)
T ss_pred ecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC---CCcH-HH
Confidence 99999999999999976799999996 2 48999999999999963 4567999999999998765 7734 44
Q ss_pred HHHHHHHHHHhc
Q 011848 459 LDRLVNDIKMMS 470 (476)
Q Consensus 459 ~~~~i~~l~~~~ 470 (476)
+++||++++...
T Consensus 431 l~~~v~~~~~~~ 442 (446)
T PLN00414 431 ADKFVEALENEV 442 (446)
T ss_pred HHHHHHHHHHhc
Confidence 899999986543
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=6.2e-52 Score=416.84 Aligned_cols=417 Identities=16% Similarity=0.146 Sum_probs=291.9
Q ss_pred ccEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCC-------C
Q 011848 6 HVHVAIL-PLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLP-------R 77 (476)
Q Consensus 6 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 77 (476)
..||+++ |.++.+|+.-+.+|+++|++|||+||++++.... ..... . ..+++.+.++...+ .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~-~--------~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH-L--------CGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC-C--------CCCEEEEEcCCChHHHHHHHhh
Confidence 4588765 8899999999999999999999999999874311 11000 0 22355554431000 0
Q ss_pred C-CCCC---CCCh----HHHHHHHHhh-----CcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHh-CCceEEEecchh
Q 011848 78 D-HPRT---PDKF----PELVDSLNCA-----TPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREV-GVSIIYFRTISA 143 (476)
Q Consensus 78 ~-~~~~---~~~~----~~~~~~~~~~-----~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~l-giP~v~~~~~~~ 143 (476)
. .... ..+. ......+... ..+.+.++++.-+.++|+||+|.+..|+..+|+.+ ++|+|.++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 0 0000 0000 0001111111 24455666651024899999999999999999999 999988877655
Q ss_pred hHHHHHhhhhhhhhcCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccC-CCCCChHHHHHH-H----HhhhhccCCE
Q 011848 144 CAFWSFHCIPDIIDAGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRV-NDPMDPHLLLFA-R----ETRLSAHADG 217 (476)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~-~----~~~~~~~~~~ 217 (476)
........-+.+.+++|+|.... .....++++.++.|.+........... ....+...+... . ..+...+.++
T Consensus 170 ~~~~~~~~gg~p~~~syvP~~~~-~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l 248 (507)
T PHA03392 170 LAENFETMGAVSRHPVYYPNLWR-SKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQL 248 (507)
T ss_pred chhHHHhhccCCCCCeeeCCccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcE
Confidence 43322221125666778876655 455566666666662111000000000 000111111110 0 1123356789
Q ss_pred EEEcCccccchHHHHHHHhcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEeccccc--
Q 011848 218 LILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAV-- 295 (476)
Q Consensus 218 ~l~~s~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-- 295 (476)
+|+|+.+.+++| || .+|++++|||++.+.... .+.++++.+|++. .++++|||||||...
T Consensus 249 ~lvns~~~~d~~-----rp-~~p~v~~vGgi~~~~~~~-----------~~l~~~l~~fl~~-~~~g~V~vS~GS~~~~~ 310 (507)
T PHA03392 249 LFVNVHPVFDNN-----RP-VPPSVQYLGGLHLHKKPP-----------QPLDDYLEEFLNN-STNGVVYVSFGSSIDTN 310 (507)
T ss_pred EEEecCccccCC-----CC-CCCCeeeecccccCCCCC-----------CCCCHHHHHHHhc-CCCcEEEEECCCCCcCC
Confidence 999999999888 88 999999999998743211 1356778899984 456899999999863
Q ss_pred -CCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHH
Q 011848 296 -MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNST 374 (476)
Q Consensus 296 -~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~ 374 (476)
.+.+.++.+++++++.+.+|||+++.+ ..+ ...|+|+++.+|+||.+||+|+.+++||||||+||+
T Consensus 311 ~~~~~~~~~~l~a~~~l~~~viw~~~~~---------~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~ 377 (507)
T PHA03392 311 DMDNEFLQMLLRTFKKLPYNVLWKYDGE---------VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQST 377 (507)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCC---------cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccH
Confidence 567889999999999999999999632 111 115789999999999999999999999999999999
Q ss_pred HHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCC
Q 011848 375 LESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGG 453 (476)
Q Consensus 375 ~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g 453 (476)
+||+++|||+|++|+++||+.||+|++ ++|+|+.++ .++++++|.++|+++|+| ++||+||+++++.+++. .-
T Consensus 378 ~Eal~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~---p~ 451 (507)
T PHA03392 378 DEAIDALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLIRHQ---PM 451 (507)
T ss_pred HHHHHcCCCEEECCCCccHHHHHHHHH-HcCcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC---CC
Confidence 999999999999999999999999994 799999999 789999999999999999 99999999999999984 32
Q ss_pred ChHHHHHHHHHHHHHhc
Q 011848 454 SSYCNLDRLVNDIKMMS 470 (476)
Q Consensus 454 ~~~~~~~~~i~~l~~~~ 470 (476)
+..+.+...+|.+..++
T Consensus 452 ~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 452 TPLHKAIWYTEHVIRNK 468 (507)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33566678888887776
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.5e-52 Score=427.20 Aligned_cols=403 Identities=22% Similarity=0.299 Sum_probs=239.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCC-CCh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP-DKF 86 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (476)
||+++|. +++|+.++..|+++|++|||+||++++.. ...+.... ..++++..++...+....... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSP-SSSLNPSK---------PSNIRFETYPDPYPEEEFEEIFPEF 70 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHH-HHT---------------S-CCEEEE-----TT------TTH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeec-cccccccc---------ccceeeEEEcCCcchHHHhhhhHHH
Confidence 7888885 88999999999999999999999999743 22222111 224667776654443322111 111
Q ss_pred -HHHHH-------------HH---HhhCcH---------HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEec
Q 011848 87 -PELVD-------------SL---NCATPP---------LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 87 -~~~~~-------------~~---~~~~~~---------~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~ 140 (476)
...+. .. ...... .+.+.++. .++|++|+|.+..|+..+|+.+++|.+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 71 ISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 11111 00 010111 11122222 3899999999999999999999999987655
Q ss_pred chhhHHHHHhhhhhhhhcCCCCCCCCcccCccccccCCCCCCCCCC-----------CCCCcccCCCCCChHHHHHHHHh
Q 011848 141 ISACAFWSFHCIPDIIDAGELPIKGTEDMDRLITTVPGMEGFLRCR-----------DLPSFCRVNDPMDPHLLLFARET 209 (476)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~ 209 (476)
..+...........+.+++|+|.... +....+.+..++.|.+... .............. ...
T Consensus 149 ~~~~~~~~~~~~g~p~~psyvP~~~s-~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 221 (500)
T PF00201_consen 149 STPMYDLSSFSGGVPSPPSYVPSMFS-DFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPF------SFR 221 (500)
T ss_dssp CCSCSCCTCCTSCCCTSTTSTTCBCC-CSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GG------GCH
T ss_pred ccccchhhhhccCCCCChHHhccccc-cCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhccccc------ccH
Confidence 43322222111133455677776554 4555566666665521100 00011100000000 011
Q ss_pred hhhccCCEEEEcCccccchHHHHHHHhcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEE
Q 011848 210 RLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVS 289 (476)
Q Consensus 210 ~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs 289 (476)
+...+.+++++|+.+.++.| || ..|++++||+++....+ +.+.++.+|++...++++||||
T Consensus 222 ~~~~~~~l~l~ns~~~ld~p-----rp-~~p~v~~vGgl~~~~~~-------------~l~~~~~~~~~~~~~~~vv~vs 282 (500)
T PF00201_consen 222 ELLSNASLVLINSHPSLDFP-----RP-LLPNVVEVGGLHIKPAK-------------PLPEELWNFLDSSGKKGVVYVS 282 (500)
T ss_dssp HHHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S-----------------TCHHHHHHHTSTTTTTEEEEEE
T ss_pred HHHHHHHHHhhhccccCcCC-----cc-hhhcccccCcccccccc-------------ccccccchhhhccCCCCEEEEe
Confidence 22245667889999888877 88 88999999999876554 3456688899854689999999
Q ss_pred ecccccCCH-HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccc
Q 011848 290 FGSIAVMSR-DQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTH 368 (476)
Q Consensus 290 ~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~H 368 (476)
|||.....+ +..+.+++++++++++|||++++. .+. .+++|+++.+|+||.+||.|+++++||||
T Consensus 283 fGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~----------~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitH 348 (500)
T PF00201_consen 283 FGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE----------PPE----NLPKNVLIVKWLPQNDLLAHPRVKLFITH 348 (500)
T ss_dssp -TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS----------HGC----HHHTTEEEESS--HHHHHTSTTEEEEEES
T ss_pred cCcccchhHHHHHHHHHHHHhhCCCccccccccc----------ccc----cccceEEEeccccchhhhhcccceeeeec
Confidence 999875444 447889999999999999999632 111 15789999999999999999999999999
Q ss_pred cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011848 369 CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKK 447 (476)
Q Consensus 369 gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~ 447 (476)
||+||++||+++|||+|++|+++||+.||+|++ +.|+|+.++ +++|.++|.++|+++|+| ++|++||+++++.+++
T Consensus 349 gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~-~~G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 349 GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVE-EKGVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKRLSSLFRD 425 (500)
T ss_dssp --HHHHHHHHHCT--EEE-GCSTTHHHHHHHHH-HTTSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHHHHHTTT-
T ss_pred cccchhhhhhhccCCccCCCCcccCCccceEEE-EEeeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999995 789999999 799999999999999999 9999999999999997
Q ss_pred HHhcCCChHHHHHHHHHHHHHh
Q 011848 448 SVNKGGSSYCNLDRLVNDIKMM 469 (476)
Q Consensus 448 ~~~~~g~~~~~~~~~i~~l~~~ 469 (476)
-... ..+.+...+|-+..+
T Consensus 426 ~p~~---p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 426 RPIS---PLERAVWWIEYVARH 444 (500)
T ss_dssp ----------------------
T ss_pred CCCC---HHHHHHHHHHHHHhc
Confidence 5222 234556666665554
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4e-44 Score=355.37 Aligned_cols=384 Identities=19% Similarity=0.234 Sum_probs=252.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC---CCChHH
Q 011848 12 LPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT---PDKFPE 88 (476)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 88 (476)
+.+|++||++|++.||++|++|||+|+|++++.+.+.+... ++.+..++.......... ..+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~------------G~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA------------GAEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc------------CCEEEecCCcCccccccccccCcchHH
Confidence 35799999999999999999999999999999887777765 377777775433211000 022233
Q ss_pred HHHHHHhhCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCCCCCc
Q 011848 89 LVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGTE 167 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (476)
....+.......+..+.+.+ ..+||+||+|.+++++..+|+.+|||+|.+++.+.... .++... .|....
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~----~~~~~~- 139 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV----SPAGEG- 139 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc----cccchh-
Confidence 33333332223333333322 24999999999988999999999999998865432110 001100 011100
Q ss_pred ccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCeeeecc
Q 011848 168 DMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIGP 247 (476)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGp 247 (476)
+.............+ ...+..+........... ..+. ....+..+..+.+.|+++ ++..+++++++||
T Consensus 140 -~~~~~~~~~~~~~~~-~~~~~~~r~~~gl~~~~~----~~~~-~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp 207 (392)
T TIGR01426 140 -SAEEGAIAERGLAEY-VARLSALLEEHGITTPPV----EFLA-APRRDLNLVYTPKAFQPA-----GETFDDSFTFVGP 207 (392)
T ss_pred -hhhhhccccchhHHH-HHHHHHHHHHhCCCCCCH----HHHh-cCCcCcEEEeCChHhCCC-----ccccCCCeEEECC
Confidence 000000000000000 000000000000000000 0000 122334556665556554 3313467999999
Q ss_pred ccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCC
Q 011848 248 LNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGK 327 (476)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 327 (476)
+...... ...|.....++++||||+||+.......+..+++++.+.+.+++|..+...
T Consensus 208 ~~~~~~~------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~---- 265 (392)
T TIGR01426 208 CIGDRKE------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV---- 265 (392)
T ss_pred CCCCccc------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC----
Confidence 8754221 112555456899999999998766667888899999999999999885321
Q ss_pred CCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeee
Q 011848 328 DGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLG 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g 407 (476)
....+ ...++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||.++ +++|+|
T Consensus 266 -----~~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~g 336 (392)
T TIGR01426 266 -----DPADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGLG 336 (392)
T ss_pred -----ChhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCCE
Confidence 01111 125689999999999999999997 999999999999999999999999999999999999 479999
Q ss_pred EEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011848 408 LDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 466 (476)
Q Consensus 408 ~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l 466 (476)
+.+. .++++++|.++|+++|+| ++|+++++++++.+++. +| ...+.++|+++
T Consensus 337 ~~l~~~~~~~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~---~~--~~~aa~~i~~~ 389 (392)
T TIGR01426 337 RHLPPEEVTAEKLREAVLAVLSD--PRYAERLRKMRAEIREA---GG--ARRAADEIEGF 389 (392)
T ss_pred EEeccccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHc---CC--HHHHHHHHHHh
Confidence 9998 689999999999999999 89999999999999986 44 34556666665
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=5.7e-44 Score=355.93 Aligned_cols=379 Identities=15% Similarity=0.154 Sum_probs=246.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCC--C---
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP--R--- 81 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 81 (476)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...++.. +++|..+++..+.... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~------------G~~~~~~~~~~~~~~~~~~~~~ 68 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA------------GLEFVPVGGDPDELLASPERNA 68 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc------------CCceeeCCCCHHHHHhhhhhcc
Confidence 6999999999999999999999999999999999998866666544 3777777753221100 0
Q ss_pred -----CCCChHHHHHHHHhhCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhh
Q 011848 82 -----TPDKFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDI 155 (476)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (476)
...........+.......++++++.+ +.+||+||+|.+..++..+|+++|||++.+++++........+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~---- 144 (401)
T cd03784 69 GLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPP---- 144 (401)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCC----
Confidence 001111122222332333444444433 2499999999998999999999999999998875432111000
Q ss_pred hhcCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhh------hccCCEEEEcCccccchH
Q 011848 156 IDAGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRL------SAHADGLILNTFEDLEGP 229 (476)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~s~~~le~~ 229 (476)
|. . ......... +...... ...........+.... ....+..+....+.+.++
T Consensus 145 ------~~--~-~~~~~~~~~------~~~~~~~------~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 145 ------PL--G-RANLRLYAL------LEAELWQ------DLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred ------cc--c-hHHHHHHHH------HHHHHHH------HHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 00 0 000000000 0000000 0000000000000000 011122222222233222
Q ss_pred HHHHHHhcCC-CCeeeec-cccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCC-HHHHHHHHH
Q 011848 230 ILSQIRNHSC-PNIYSIG-PLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMS-RDQLIEFYY 306 (476)
Q Consensus 230 ~~~~~~~~~~-~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~ 306 (476)
++ .+ ++..++| ++...... +..+.++..|++. ++++|||++||..... ......+++
T Consensus 204 -----~~-~~~~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~ 263 (401)
T cd03784 204 -----PP-DWPRFDLVTGYGFRDVPYN------------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVE 263 (401)
T ss_pred -----CC-CccccCcEeCCCCCCCCCC------------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHH
Confidence 33 33 4566775 33322111 1234556678864 7899999999998644 456778889
Q ss_pred HHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceec
Q 011848 307 GLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMIC 386 (476)
Q Consensus 307 al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~ 386 (476)
++...+.++||+++..... . ...++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|+
T Consensus 264 a~~~~~~~~i~~~g~~~~~------~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~ 329 (401)
T cd03784 264 AVATLGQRAILSLGWGGLG------A------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLV 329 (401)
T ss_pred HHHHcCCeEEEEccCcccc------c------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEe
Confidence 9999999999998643110 1 115689999999999999999997 9999999999999999999999
Q ss_pred cccccchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011848 387 WPSFADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVND 465 (476)
Q Consensus 387 ~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~ 465 (476)
+|+..||+.||+++ +++|+|+.++ ..++.++|.+++++++++ .++++++++++++++. +| ...+.++||+
T Consensus 330 ~P~~~dQ~~~a~~~-~~~G~g~~l~~~~~~~~~l~~al~~~l~~---~~~~~~~~~~~~~~~~---~g--~~~~~~~ie~ 400 (401)
T cd03784 330 VPFFGDQPFWAARV-AELGAGPALDPRELTAERLAAALRRLLDP---PSRRRAAALLRRIREE---DG--VPSAADVIER 400 (401)
T ss_pred eCCCCCcHHHHHHH-HHCCCCCCCCcccCCHHHHHHHHHHHhCH---HHHHHHHHHHHHHHhc---cC--HHHHHHHHhh
Confidence 99999999999999 5899999998 678999999999999995 4667788888888765 44 4555777765
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-43 Score=342.33 Aligned_cols=392 Identities=19% Similarity=0.244 Sum_probs=251.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCC-CCCCCCCC--
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDG-LPRDHPRT-- 82 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 82 (476)
||||+|+..|++||++|+++||++|.++||+|+|++++.+.+.+++.+ +.|..++.. ........
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag------------~~f~~~~~~~~~~~~~~~~~ 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG------------LAFVAYPIRDSELATEDGKF 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC------------cceeeccccCChhhhhhhhh
Confidence 579999999999999999999999999999999999999888888773 555555432 11111000
Q ss_pred --CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHh-hhhhhhhcC
Q 011848 83 --PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFH-CIPDIIDAG 159 (476)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~ 159 (476)
...+......+. .....+.+++.+. .+|+|+.|.....+ .+++..++|++.......+...... +.+.....+
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
T COG1819 69 AGVKSFRRLLQQFK-KLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG 144 (406)
T ss_pred hccchhHHHhhhhh-hhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc
Confidence 111111111222 2333344455554 99999999766544 9999999999987665433222111 100000000
Q ss_pred CCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHH----H
Q 011848 160 ELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQI----R 235 (476)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~----~ 235 (476)
..+.... ...+.. ..+........ ......+...+......-..+..+-+.++..+.+.. +
T Consensus 145 ~~~~~~~-------~~~~~~---~~~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
T COG1819 145 KLPIPLY-------PLPPRL---VRPLIFARSWL-----PKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGD 209 (406)
T ss_pred ccccccc-------ccChhh---ccccccchhhh-----hhhhhhhhccccccccchHHHhcCCCCccccccccccCCCC
Confidence 0000000 000000 00000000000 000000000000000000001111111111111110 1
Q ss_pred hcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcE
Q 011848 236 NHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSF 315 (476)
Q Consensus 236 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 315 (476)
. .+-...++||+....... +..|. ..++++||||+||.... .++++.+++++..++.++
T Consensus 210 ~-~p~~~~~~~~~~~~~~~~-----------------~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~v 268 (406)
T COG1819 210 R-LPFIGPYIGPLLGEAANE-----------------LPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRV 268 (406)
T ss_pred C-CCCCcCcccccccccccc-----------------Ccchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEE
Confidence 1 233455666666543322 22343 34799999999999866 888999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhh
Q 011848 316 LWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQI 395 (476)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~ 395 (476)
|+.++.. .. ...+ .++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.
T Consensus 269 i~~~~~~------~~-~~~~-----~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 269 IVSLGGA------RD-TLVN-----VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred EEecccc------cc-cccc-----CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 9998531 00 1121 6789999999999999999998 9999999999999999999999999999999
Q ss_pred hhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Q 011848 396 NSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMMSS 471 (476)
Q Consensus 396 na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~~~~~ 471 (476)
||.|+ |++|+|..+. +.++++.|+++|+++|++ +.|+++++++++.++++ +| ...+.++||++...+.
T Consensus 335 nA~rv-e~~G~G~~l~~~~l~~~~l~~av~~vL~~--~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~~~ 403 (406)
T COG1819 335 NAERV-EELGAGIALPFEELTEERLRAAVNEVLAD--DSYRRAAERLAEEFKEE---DG--PAKAADLLEEFAREKK 403 (406)
T ss_pred HHHHH-HHcCCceecCcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhccc
Confidence 99999 6899999998 799999999999999999 99999999999999997 66 6777899998766554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.5e-41 Score=344.27 Aligned_cols=410 Identities=27% Similarity=0.402 Sum_probs=253.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
..++++++.|++||++|++.+|+.|+++||+||++++...................+...+.+...+++++.........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 35888899999999999999999999999999999987654443321100000000000111111112222221000000
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcC----CCCceEEEecCCcccHHHHHHHhC-CceEEEecchhhHHHHHhhhhhhhhcCC
Q 011848 86 FPELVDSLNCATPPLLKEMVSDS----KSPVNCIITDGYMSRAIDAAREVG-VSIIYFRTISACAFWSFHCIPDIIDAGE 160 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~----~~~~D~Ii~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
.......+...+...+++..... ..++|++|+|.+..+...+|.... ++..++.+.+........+. +..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~----~~~~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPS----PLSY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcC----cccc
Confidence 01112233333333444333222 234999999998777777777765 88888877766554443321 2224
Q ss_pred CCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHH------------HHHhhhhccCCEEEEcCccccch
Q 011848 161 LPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLF------------ARETRLSAHADGLILNTFEDLEG 228 (476)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~s~~~le~ 228 (476)
.|............+..+..+ +....++........ ....... ........+.+..++|+...++.
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPN-LIKKDLPSFLFSLSD-DRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred cCcccCccccccCcHHHHHHH-HHHHHHHHHHHHHhh-hHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 443322000011111111111 111111111000000 0000000 01112334556778888766665
Q ss_pred HHHHHHHhcCCCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCC--ceEEEEecccc---cCCHHHHHH
Q 011848 229 PILSQIRNHSCPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQ--SVIYVSFGSIA---VMSRDQLIE 303 (476)
Q Consensus 229 ~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~V~vs~Gs~~---~~~~~~~~~ 303 (476)
+ .++ ..++++.|||+....... ......+|++..... ++|||||||+. .++.++...
T Consensus 239 ~----~~~-~~~~v~~IG~l~~~~~~~-------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~ 300 (496)
T KOG1192|consen 239 E----PRP-LLPKVIPIGPLHVKDSKQ-------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKE 300 (496)
T ss_pred C----CCC-CCCCceEECcEEecCccc-------------cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHH
Confidence 2 144 568999999999873321 011344677755454 99999999998 799999999
Q ss_pred HHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHH-hCcCCCCccccccChhHHHHHHHhC
Q 011848 304 FYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEV-LAHSAVGGFLTHCGWNSTLESIVAG 381 (476)
Q Consensus 304 ~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~l-l~~~~~~~~I~HgG~gs~~eal~~G 381 (476)
++.+++.. ++.|+|++...... .+++++.++.++||...+|+||.++ |.|+++++||||||+||++|++++|
T Consensus 301 l~~~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~G 374 (496)
T KOG1192|consen 301 LAKALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSG 374 (496)
T ss_pred HHHHHHhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcC
Confidence 99999999 88899999743110 1233332112457888899999998 5999999999999999999999999
Q ss_pred CceeccccccchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011848 382 MPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKS 448 (476)
Q Consensus 382 vP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~ 448 (476)
||++++|+++||+.||++++++ |.+..+. .+++.+.+.+++.+++++ ++|+++|+++++.+++-
T Consensus 375 vP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~~~ 439 (496)
T KOG1192|consen 375 VPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILRDQ 439 (496)
T ss_pred CceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHHcC
Confidence 9999999999999999999754 5555555 667776699999999999 99999999999998863
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3.9e-26 Score=221.20 Aligned_cols=319 Identities=16% Similarity=0.173 Sum_probs=199.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh-hHhhcccccccccccCCCeeEEEcCC-CCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLTD-GLPRDHPRTP 83 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (476)
|-||+|.+.|+.||++|.+++|++|.++||+|+|++.....+ .+... .++.+..++. ++.. .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-----------~g~~~~~~~~~~l~~-----~ 64 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-----------ENIPYYSISSGKLRR-----Y 64 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-----------cCCcEEEEeccCcCC-----C
Confidence 448999999999999999999999999999999999765432 11111 1366666652 1111 1
Q ss_pred CChHHHHHHHHh--hCcHHHHHHHHcCCCCceEEEecCCcc--cHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcC
Q 011848 84 DKFPELVDSLNC--ATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (476)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~D~Ii~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (476)
..+. .+..... ...-....+++++ +||+|++..-+. .+..+|..+++|++.+-..
T Consensus 65 ~~~~-~~~~~~~~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n------------------ 123 (352)
T PRK12446 65 FDLK-NIKDPFLVMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD------------------ 123 (352)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCC------------------
Confidence 1111 1111111 1222345667776 999999876444 4789999999999986322
Q ss_pred CCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCC
Q 011848 160 ELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC 239 (476)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (476)
..+++.+++. .+.++.++ .+|++ . ..+..
T Consensus 124 ---------------~~~g~~nr~~---------------------------~~~a~~v~-~~f~~---~-----~~~~~ 152 (352)
T PRK12446 124 ---------------MTPGLANKIA---------------------------LRFASKIF-VTFEE---A-----AKHLP 152 (352)
T ss_pred ---------------CCccHHHHHH---------------------------HHhhCEEE-EEccc---h-----hhhCC
Confidence 1122222000 01122222 23321 1 11012
Q ss_pred -CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCH-HHHHHHHHHHhhCCCcEEE
Q 011848 240 -PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSR-DQLIEFYYGLVHSKKSFLW 317 (476)
Q Consensus 240 -~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~ 317 (476)
.+++++|+...+..... ......+.+.-..++++|+|..||+....- +.+..++..+. .+.+++|
T Consensus 153 ~~k~~~tG~Pvr~~~~~~------------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~ 219 (352)
T PRK12446 153 KEKVIYTGSPVREEVLKG------------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVH 219 (352)
T ss_pred CCCeEEECCcCCcccccc------------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEE
Confidence 36888996654322110 011111122223468899999999985333 22333333332 2478899
Q ss_pred EEcCCCCCCCCCCCCCchHHHHHhcCCceeeecc-C-HHHHhCcCCCCccccccChhHHHHHHHhCCceeccccc-----
Q 011848 318 VIRPDLISGKDGENQIPEELLEATKERGCIAGWV-P-QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF----- 390 (476)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v-p-~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~----- 390 (476)
+++.+ .+..... . ..++.+.+|+ + ..+++..+++ +|||||.+|+.|++++|+|+|++|+.
T Consensus 220 ~~G~~---------~~~~~~~-~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 220 LCGKG---------NLDDSLQ-N-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred EeCCc---------hHHHHHh-h-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 98643 1111111 1 1355666887 4 4569999997 99999999999999999999999974
Q ss_pred cchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011848 391 ADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADR 440 (476)
Q Consensus 391 ~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~ 440 (476)
.||..||..++ +.|+|..+. ++++++.|.+++.++++| .+.|++++++
T Consensus 287 ~~Q~~Na~~l~-~~g~~~~l~~~~~~~~~l~~~l~~ll~~-~~~~~~~~~~ 335 (352)
T PRK12446 287 GDQILNAESFE-RQGYASVLYEEDVTVNSLIKHVEELSHN-NEKYKTALKK 335 (352)
T ss_pred chHHHHHHHHH-HCCCEEEcchhcCCHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 48999999995 789999998 799999999999999975 1356555444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=4.2e-25 Score=213.18 Aligned_cols=304 Identities=16% Similarity=0.207 Sum_probs=188.6
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCC-CCCCCCCCCC
Q 011848 7 VHVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDG-LPRDHPRTPD 84 (476)
Q Consensus 7 ~~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (476)
|||+|...+ +.||+.++++|+++| |||+|+|++.....+.+.+. +....+++- ....+ ....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-------------FPVREIPGLGPIQEN-GRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-------------cCEEEccCceEeccC-Cccc
Confidence 699888887 889999999999999 69999999987654444332 233333321 11111 0111
Q ss_pred ChHHHHHHH-----HhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcC
Q 011848 85 KFPELVDSL-----NCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (476)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (476)
......... .......+.+++++ .+||+||+|. .+.+..+|+..|||++.+........ +. .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------~~----~ 131 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------PN----F 131 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc------cc----C
Confidence 111111111 11122233444455 4999999994 45578999999999999866532110 00 0
Q ss_pred CCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCC
Q 011848 160 ELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC 239 (476)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (476)
..+... . .......+.... ....++..+.-++. .+ .+ ..
T Consensus 132 ~~~~~~---------------~----------------~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~-----~~-~~ 170 (318)
T PF13528_consen 132 WLPWDQ---------------D----------------FGRLIERYIDRY-HFPPADRRLALSFY---PP-----LP-PF 170 (318)
T ss_pred Ccchhh---------------h----------------HHHHHHHhhhhc-cCCcccceecCCcc---cc-----cc-cc
Confidence 000000 0 000001111000 11233334444433 11 11 22
Q ss_pred CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCC-CcEEEE
Q 011848 240 PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK-KSFLWV 318 (476)
Q Consensus 240 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~ 318 (476)
.++.++||+..+..... - ..+++.|+|++|..... .++++++..+ +.+++.
T Consensus 171 ~~~~~~~p~~~~~~~~~--------------------~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~ 222 (318)
T PF13528_consen 171 FRVPFVGPIIRPEIREL--------------------P--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF 222 (318)
T ss_pred ccccccCchhccccccc--------------------C--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE
Confidence 34667888876433210 0 22567899999988632 5566777766 566555
Q ss_pred EcCCCCCCCCCCCCCchHHHHHhcCCceeeecc--CHHHHhCcCCCCccccccChhHHHHHHHhCCceecccc--ccchh
Q 011848 319 IRPDLISGKDGENQIPEELLEATKERGCIAGWV--PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS--FADQQ 394 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v--p~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~--~~DQ~ 394 (476)
+... ..+ ..+|+.+.+|. ...++|+.+++ +|+|||.||++|++++|+|++++|. ..||.
T Consensus 223 -g~~~--------~~~------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~ 285 (318)
T PF13528_consen 223 -GPNA--------ADP------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQE 285 (318)
T ss_pred -cCCc--------ccc------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHH
Confidence 4220 011 35899999886 45779999997 9999999999999999999999999 78999
Q ss_pred hhhHhhhcceeeeEEec-cccCHHHHHHHHHHH
Q 011848 395 INSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDL 426 (476)
Q Consensus 395 ~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~ 426 (476)
.||.++ +++|+|+.++ ++++++.|.++|+++
T Consensus 286 ~~a~~l-~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 286 YNARKL-EELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHH-HHCCCeEEcccccCCHHHHHHHHhcC
Confidence 999999 5899999998 899999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=3.1e-23 Score=198.36 Aligned_cols=325 Identities=20% Similarity=0.229 Sum_probs=203.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGI-KITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
++|++...++-||++|.++|+++|.++|+ +|.++.+....+..... ..++.++.++.+...... ....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~----------~~~~~~~~I~~~~~~~~~-~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK----------QYGIEFELIPSGGLRRKG-SLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc----------ccCceEEEEecccccccC-cHHH
Confidence 47899999999999999999999999999 58888665543322222 225777777643222211 0011
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC--cccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCC
Q 011848 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY--MSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPI 163 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (476)
....+..+. ...+.+.+++++ +||+|+.-.- +..+..+|..+|||++.+-.
T Consensus 70 ~~~~~~~~~--~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq----------------------- 122 (357)
T COG0707 70 LKAPFKLLK--GVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ----------------------- 122 (357)
T ss_pred HHHHHHHHH--HHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEec-----------------------
Confidence 111112111 345568888887 9999998444 33788889999999999622
Q ss_pred CCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCee
Q 011848 164 KGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIY 243 (476)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~ 243 (476)
+..+|+.|.+.. ..++ .+..+|+..+.- . ...+++
T Consensus 123 ----------n~~~G~ank~~~---------------------------~~a~-~V~~~f~~~~~~------~-~~~~~~ 157 (357)
T COG0707 123 ----------NAVPGLANKILS---------------------------KFAK-KVASAFPKLEAG------V-KPENVV 157 (357)
T ss_pred ----------CCCcchhHHHhH---------------------------Hhhc-eeeecccccccc------C-CCCceE
Confidence 233444431100 0011 112232221100 0 112577
Q ss_pred eec-cccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCH-HHHHHHHHHHhhCCCcEEEEEcC
Q 011848 244 SIG-PLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSR-DQLIEFYYGLVHSKKSFLWVIRP 321 (476)
Q Consensus 244 ~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~ 321 (476)
.+| |+..+... .+. . ...+.. ..++++|+|..||+....- +.+..+...+.+ +..+++.++.
T Consensus 158 ~tG~Pvr~~~~~-~~~------------~-~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~ 221 (357)
T COG0707 158 VTGIPVRPEFEE-LPA------------A-EVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGK 221 (357)
T ss_pred EecCcccHHhhc-cch------------h-hhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCc
Confidence 777 44443221 100 0 001111 2268999999999974221 222233333333 4688888864
Q ss_pred CCCCCCCCCCCCchHHHHHh-cCC-ceeeeccCHH-HHhCcCCCCccccccChhHHHHHHHhCCceeccccc----cchh
Q 011848 322 DLISGKDGENQIPEELLEAT-KER-GCIAGWVPQE-EVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF----ADQQ 394 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~-~~n-v~~~~~vp~~-~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~----~DQ~ 394 (476)
+. .+...... ..+ +.+.+|..++ ++++.+|+ +||++|.+|+.|++++|+|.+.+|.- .||.
T Consensus 222 ~~----------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~ 289 (357)
T COG0707 222 ND----------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQE 289 (357)
T ss_pred ch----------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHH
Confidence 31 11221111 123 6777999864 59999998 99999999999999999999999973 3899
Q ss_pred hhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011848 395 INSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKS 448 (476)
Q Consensus 395 ~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~ 448 (476)
.||..+ ++.|.|..++ .++|.+.|.+.|.+++++ .++.+++++..++.
T Consensus 290 ~NA~~l-~~~gaa~~i~~~~lt~~~l~~~i~~l~~~-----~~~l~~m~~~a~~~ 338 (357)
T COG0707 290 YNAKFL-EKAGAALVIRQSELTPEKLAELILRLLSN-----PEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHH-HhCCCEEEeccccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHhc
Confidence 999999 5789999999 789999999999999984 44555566665554
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=3.9e-22 Score=192.05 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=172.5
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhccc-ccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 8 HVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS-DAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
||+|...+ +.||+.|.++|+++|++ ||+|+|+++.. ...+.+..+ ..+.. .|++.+.. .++ .. +
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~-~~~~~~~~~~~~~~~---~p~~~~~~-~~~-------~~-~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR-SKNYISKYGFKVFET---FPGIKLKG-EDG-------KV-N 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC-HHHhhhhhcCcceec---cCCceEee-cCC-------cC-c
Confidence 57776666 55999999999999999 99999998766 333333222 11111 11122111 001 00 1
Q ss_pred hHHHHH---HHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCC
Q 011848 86 FPELVD---SLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELP 162 (476)
Q Consensus 86 ~~~~~~---~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (476)
....+. .+.........++++++ +||+||+| +.+.+..+|+.+|||++.+..+... .++..
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~~~~~------- 130 (321)
T TIGR00661 67 IVKTLRNKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------RYPLK------- 130 (321)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------cCCcc-------
Confidence 111111 11111233345677776 99999999 6666799999999999987653110 00000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCe
Q 011848 163 IKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNI 242 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 242 (476)
+ + ............+ ...++.+++..++.... ..|.+
T Consensus 131 --------------------~--~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~p~~ 167 (321)
T TIGR00661 131 --------------------T--D----------LIVYPTMAALRIF--NERCERFIVPDYPFPYT---------ICPKI 167 (321)
T ss_pred --------------------c--c----------hhHHHHHHHHHHh--ccccceEeeecCCCCCC---------CCccc
Confidence 0 0 0000001111111 12223333333211100 01111
Q ss_pred e--eeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEc
Q 011848 243 Y--SIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIR 320 (476)
Q Consensus 243 ~--~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 320 (476)
. .-+|.. ...+.++. ..+++.|+|.+|+... ..+++++.+.+. +.+++.
T Consensus 168 ~~~~~~~~~--------------------~~~~~~~~--~~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~ 218 (321)
T TIGR00661 168 IKNMEGPLI--------------------RYDVDDVD--NYGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCY 218 (321)
T ss_pred cccCCCccc--------------------chhhhccc--cCCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEe
Confidence 0 001111 01111222 2245778888888642 345667766653 223332
Q ss_pred CCCCCCCCCCCCCchHHHHHhcCCceeeeccC--HHHHhCcCCCCccccccChhHHHHHHHhCCceecccccc--chhhh
Q 011848 321 PDLISGKDGENQIPEELLEATKERGCIAGWVP--QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFA--DQQIN 396 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp--~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~n 396 (476)
... ...+. .++|+.+.+|.| ..++|+.+++ +|||||.+|++||+++|+|++++|... ||..|
T Consensus 219 ~~~--------~~~~~----~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~n 284 (321)
T TIGR00661 219 SYE--------VAKNS----YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNN 284 (321)
T ss_pred CCC--------CCccc----cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHH
Confidence 110 11111 357999999997 4668888987 999999999999999999999999854 89999
Q ss_pred hHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHH
Q 011848 397 SRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFM 435 (476)
Q Consensus 397 a~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~ 435 (476)
|..++ +.|+|+.++ .++ ++.+++.++++| +.|+
T Consensus 285 a~~l~-~~g~~~~l~~~~~---~~~~~~~~~~~~--~~~~ 318 (321)
T TIGR00661 285 AVKLE-DLGCGIALEYKEL---RLLEAILDIRNM--KRYK 318 (321)
T ss_pred HHHHH-HCCCEEEcChhhH---HHHHHHHhcccc--cccc
Confidence 99995 789999997 455 566677677666 5553
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=1.7e-19 Score=176.93 Aligned_cols=337 Identities=17% Similarity=0.132 Sum_probs=196.8
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhh-HhhcccccccccccCCCeeEEEcCC-CCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDR-VIRHSSDAFSRYMQIPGFQFKTLTD-GLPRDHPRTP 83 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (476)
||||+|+..+..||...++.|++.|.++||+|++++.+..... ..+ ..+++++.++. +....
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~~----- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP-----------KAGIEFHFIPSGGLRRK----- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc-----------cCCCcEEEEeccCcCCC-----
Confidence 6899999999999999999999999999999999998552111 101 11355555542 11111
Q ss_pred CChHHHHHHHH--hhCcHHHHHHHHcCCCCceEEEecCC--cccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcC
Q 011848 84 DKFPELVDSLN--CATPPLLKEMVSDSKSPVNCIITDGY--MSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAG 159 (476)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~D~Ii~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (476)
.....+.... -.....+.+++++. +||+|++... .+.+..++...++|++......
T Consensus 65 -~~~~~l~~~~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~----------------- 124 (357)
T PRK00726 65 -GSLANLKAPFKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA----------------- 124 (357)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-----------------
Confidence 1111111111 11223456667765 9999998863 3345667888899998642110
Q ss_pred CCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCC
Q 011848 160 ELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC 239 (476)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (476)
+++. .. +.. ...+|.++..+...+. +. ..
T Consensus 125 ----------------~~~~----------------------~~---r~~--~~~~d~ii~~~~~~~~-------~~-~~ 153 (357)
T PRK00726 125 ----------------VPGL----------------------AN---KLL--ARFAKKVATAFPGAFP-------EF-FK 153 (357)
T ss_pred ----------------CccH----------------------HH---HHH--HHHhchheECchhhhh-------cc-CC
Confidence 0000 00 000 0122333322211110 01 23
Q ss_pred CCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC--cEEE
Q 011848 240 PNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKK--SFLW 317 (476)
Q Consensus 240 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~ 317 (476)
.+++++|.......... .. ...-+....++++|++..|+... ......+.+++.++.. .+++
T Consensus 154 ~~i~vi~n~v~~~~~~~-----------~~---~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~ 217 (357)
T PRK00726 154 PKAVVTGNPVREEILAL-----------AA---PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIH 217 (357)
T ss_pred CCEEEECCCCChHhhcc-----------cc---hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEE
Confidence 46777775543211100 00 00011112245667766666431 1222233355554432 4455
Q ss_pred EEcCCCCCCCCCCCCCchHHHHH--hcCCceeeeccC-HHHHhCcCCCCccccccChhHHHHHHHhCCceecccc----c
Q 011848 318 VIRPDLISGKDGENQIPEELLEA--TKERGCIAGWVP-QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS----F 390 (476)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vp-~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~----~ 390 (476)
.++.. . . +.+.+. .+-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .
T Consensus 218 ~~G~g------~---~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 218 QTGKG------D---L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred EcCCC------c---H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCc
Confidence 65432 1 1 222211 222467779984 5689999998 9999999999999999999999997 3
Q ss_pred cchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011848 391 ADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVN 464 (476)
Q Consensus 391 ~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~ 464 (476)
.||..|+..+. +.|.|..++ ++++++.|.++|.++++| +.++++..+-+++..+ ..+..+.+..+.+
T Consensus 286 ~~~~~~~~~i~-~~~~g~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 353 (357)
T PRK00726 286 DHQTANARALV-DAGAALLIPQSDLTPEKLAEKLLELLSD--PERLEAMAEAARALGK----PDAAERLADLIEE 353 (357)
T ss_pred CcHHHHHHHHH-HCCCEEEEEcccCCHHHHHHHHHHHHcC--HHHHHHHHHHHHhcCC----cCHHHHHHHHHHH
Confidence 68999999995 689999998 678899999999999998 7887766666555443 3443444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=1.2e-17 Score=163.38 Aligned_cols=322 Identities=18% Similarity=0.172 Sum_probs=187.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCC-CCCCCCCCCCCh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDG-LPRDHPRTPDKF 86 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (476)
||+|.+.++.||....+.|++.|.++||+|++++....... .... ..++++..++-. .... ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~------~~ 64 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLVP--------KAGIPLHTIPVGGLRRK------GS 64 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hccc--------ccCCceEEEEecCcCCC------Ch
Confidence 68999999999999999999999999999999987542111 1100 113555555421 1111 11
Q ss_pred HHHHHHHH--hhCcHHHHHHHHcCCCCceEEEecCC--cccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCC
Q 011848 87 PELVDSLN--CATPPLLKEMVSDSKSPVNCIITDGY--MSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELP 162 (476)
Q Consensus 87 ~~~~~~~~--~~~~~~~~~ll~~~~~~~D~Ii~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (476)
...+.... -.....+.+++++. +||+|++... ...+..+|...++|++......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------------- 122 (350)
T cd03785 65 LKKLKAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC--------------------
Confidence 11111111 11223456777775 9999998643 3356778899999998631110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCe
Q 011848 163 IKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNI 242 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 242 (476)
+++. .. +. ....++.+++.+....+. - ...++
T Consensus 123 -------------~~~~----------------------~~---~~--~~~~~~~vi~~s~~~~~~-------~-~~~~~ 154 (350)
T cd03785 123 -------------VPGL----------------------AN---RL--LARFADRVALSFPETAKY-------F-PKDKA 154 (350)
T ss_pred -------------CccH----------------------HH---HH--HHHhhCEEEEcchhhhhc-------C-CCCcE
Confidence 0000 00 00 012245555544322111 0 12356
Q ss_pred eeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCH-HHHHHHHHHHhhCCCcEEEEEcC
Q 011848 243 YSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSR-DQLIEFYYGLVHSKKSFLWVIRP 321 (476)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~ 321 (476)
.++|......... ..+. .+.+....++++|++..|+...... +.+..++..+.+.+..+++.++.
T Consensus 155 ~~i~n~v~~~~~~-------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~ 220 (350)
T cd03785 155 VVTGNPVREEILA-------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGK 220 (350)
T ss_pred EEECCCCchHHhh-------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCC
Confidence 7777543221100 0000 1122212345666666666642211 22223334444334455666643
Q ss_pred CCCCCCCCCCCCchHHHHHhcCCceeeecc-CHHHHhCcCCCCccccccChhHHHHHHHhCCceecccc----ccchhhh
Q 011848 322 DLISGKDGENQIPEELLEATKERGCIAGWV-PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS----FADQQIN 396 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v-p~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~n 396 (476)
. ..+.+.+...+ ..+|+.+.+|+ ...++|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|
T Consensus 221 g------~~~~l~~~~~~-~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~ 291 (350)
T cd03785 221 G------DLEEVKKAYEE-LGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTAN 291 (350)
T ss_pred c------cHHHHHHHHhc-cCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHh
Confidence 2 11112111111 23689999998 45779999997 9999999999999999999999986 3578899
Q ss_pred hHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 011848 397 SRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRM 441 (476)
Q Consensus 397 a~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l 441 (476)
+..+. +.|.|..++ .+.+.++|.++|.+++++ +..+++..+-
T Consensus 292 ~~~l~-~~g~g~~v~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~ 334 (350)
T cd03785 292 ARALV-KAGAAVLIPQEELTPERLAAALLELLSD--PERLKAMAEA 334 (350)
T ss_pred HHHHH-hCCCEEEEecCCCCHHHHHHHHHHHhcC--HHHHHHHHHH
Confidence 99995 689999997 457999999999999987 6555544433
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=1.4e-16 Score=156.86 Aligned_cols=348 Identities=10% Similarity=0.014 Sum_probs=195.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCCh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (476)
.||+|.+.++.||++|. +|+++|.++|++|.|++.... .+.+.+. ...+.+..++ ... ....+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~--------~~~~~~~~l~----v~G--~~~~l 68 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC--------EVLYSMEELS----VMG--LREVL 68 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC--------ccccChHHhh----hcc--HHHHH
Confidence 48999999999999999 999999999999999997532 3443321 1112222222 000 00011
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCceEEEe-cCCcccHHH--HHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCC
Q 011848 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIIT-DGYMSRAID--AAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPI 163 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~-D~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (476)
. .+..+.. ....+.+++++. +||+||. |.-++.... .|+.+|||++.+.+- .
T Consensus 69 ~-~~~~~~~-~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P------------~--------- 123 (385)
T TIGR00215 69 G-RLGRLLK-IRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP------------Q--------- 123 (385)
T ss_pred H-HHHHHHH-HHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC------------c---------
Confidence 1 1111221 233556777775 9999995 543333334 899999999976321 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCee
Q 011848 164 KGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIY 243 (476)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~ 243 (476)
.+.+++..+ ..+. ..+|.+++.+.. +... .+. ..-+..
T Consensus 124 ---------~waw~~~~~---------------------r~l~------~~~d~v~~~~~~--e~~~---~~~-~g~~~~ 161 (385)
T TIGR00215 124 ---------VWAWRKWRA---------------------KKIE------KATDFLLAILPF--EKAF---YQK-KNVPCR 161 (385)
T ss_pred ---------HhhcCcchH---------------------HHHH------HHHhHhhccCCC--cHHH---HHh-cCCCEE
Confidence 011111001 0000 122222222211 1111 122 223566
Q ss_pred eeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCcEEEE
Q 011848 244 SIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWV 318 (476)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~ 318 (476)
+||.-..+...... ....+..+-+.-..++++|.+-.||....-......+++++..+ +.++++.
T Consensus 162 ~vGnPv~~~~~~~~----------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~ 231 (385)
T TIGR00215 162 FVGHPLLDAIPLYK----------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLP 231 (385)
T ss_pred EECCchhhhccccC----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78833322110000 01111112222234678888888888643233344455444432 3355554
Q ss_pred EcCCCCCCCCCCCCCchHHH---HHhcCCceeeecc-CHHHHhCcCCCCccccccChhHHHHHHHhCCceecc----ccc
Q 011848 319 IRPDLISGKDGENQIPEELL---EATKERGCIAGWV-PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW----PSF 390 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~v-p~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~----P~~ 390 (476)
.... ...+.+. +....+..+..+. ...+++..+|+ +|+-+|..|+ |++++|+|+|++ |+.
T Consensus 232 ~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~ 299 (385)
T TIGR00215 232 VVNF---------KRRLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLT 299 (385)
T ss_pred eCCc---------hhHHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHH
Confidence 4321 0111221 1111222222221 34568999997 9999999988 999999999999 864
Q ss_pred c---------chhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHH----HHHHHHHHHHHHHHHHHhcCCChH
Q 011848 391 A---------DQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKE----EFMESADRMANLAKKSVNKGGSSY 456 (476)
Q Consensus 391 ~---------DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~----~~~~~a~~l~~~~~~~~~~~g~~~ 456 (476)
. +|..|+..++ ..++...+. +++|++.|.+.+.++|+| + +++++.++--+.+++.+.++|.+.
T Consensus 300 ~~~~~~~~~~~~~~~~nil~-~~~~~pel~q~~~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (385)
T TIGR00215 300 FLIARRLVKTDYISLPNILA-NRLLVPELLQEECTPHPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSE 376 (385)
T ss_pred HHHHHHHHcCCeeeccHHhc-CCccchhhcCCCCCHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 2 3888999995 569988887 799999999999999998 7 666666655555555555567666
Q ss_pred HHHHHHH
Q 011848 457 CNLDRLV 463 (476)
Q Consensus 457 ~~~~~~i 463 (476)
++++.++
T Consensus 377 ~~a~~i~ 383 (385)
T TIGR00215 377 RAAQAVL 383 (385)
T ss_pred HHHHHHh
Confidence 7655544
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=5.3e-16 Score=151.73 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=71.4
Q ss_pred CHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccc---cchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHH
Q 011848 352 PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF---ADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLM 427 (476)
Q Consensus 352 p~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l 427 (476)
+..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+. +.|.|..++ ++.++++|.+++.+++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-~~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-DLGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-HCCCEEEEecccCCHHHHHHHHHHHH
Confidence 55779999998 99999988999999999999999863 46788988884 689999887 6678999999999999
Q ss_pred hHhHHHHHHHHHHHH
Q 011848 428 VERKEEFMESADRMA 442 (476)
Q Consensus 428 ~~~~~~~~~~a~~l~ 442 (476)
+| ++.+++..+-+
T Consensus 320 ~~--~~~~~~~~~~~ 332 (348)
T TIGR01133 320 LD--PANLEAMAEAA 332 (348)
T ss_pred cC--HHHHHHHHHHH
Confidence 97 66655444433
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=142.88 Aligned_cols=337 Identities=16% Similarity=0.130 Sum_probs=201.8
Q ss_pred CccEEEEEcCC--CccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCC--C
Q 011848 5 DHVHVAILPLP--AVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPR--D 78 (476)
Q Consensus 5 ~~~~il~~~~~--~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 78 (476)
+++||+|+++- +.||+..++.||++|++. |.+|+++++......+.. ..+++++.+|.-... +
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~-----------~~gVd~V~LPsl~k~~~G 76 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG-----------PAGVDFVKLPSLIKGDNG 76 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC-----------cccCceEecCceEecCCC
Confidence 45699999996 669999999999999998 999999998653222221 346899999842211 1
Q ss_pred CCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhc
Q 011848 79 HPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDA 158 (476)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (476)
+. ...+...-...+.+.-.+.+...++.+ +||++|+|.+-++ ..-|.+ |. ..+.. .
T Consensus 77 ~~-~~~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~G--lr~EL~--pt-----------L~yl~--~---- 132 (400)
T COG4671 77 EY-GLVDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFG--LRFELL--PT-----------LEYLK--T---- 132 (400)
T ss_pred ce-eeeecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccc--hhhhhh--HH-----------HHHHh--h----
Confidence 11 111110113333333335556666776 9999999977653 111111 00 00000 0
Q ss_pred CCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcC
Q 011848 159 GELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHS 238 (476)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (476)
..+ .. .-++. ...+.+..... ++..+-..+... +..|.+++...+.+..+...+.-++.
T Consensus 133 -----~~t-----~~--vL~lr---~i~D~p~~~~~----~w~~~~~~~~I~--r~yD~V~v~GdP~f~d~~~~~~~~~~ 191 (400)
T COG4671 133 -----TGT-----RL--VLGLR---SIRDIPQELEA----DWRRAETVRLIN--RFYDLVLVYGDPDFYDPLTEFPFAPA 191 (400)
T ss_pred -----cCC-----cc--eeehH---hhhhchhhhcc----chhhhHHHHHHH--HhheEEEEecCccccChhhcCCccHh
Confidence 000 00 00000 01111111110 111111111111 44577888777766555433322201
Q ss_pred -CCCeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhh-CCCc--
Q 011848 239 -CPNIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVH-SKKS-- 314 (476)
Q Consensus 239 -~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~-- 314 (476)
-.++.|+|.+....+...+ + +.. .+.+.-|+||-|.-. ...+++...++|... .+.+
T Consensus 192 i~~k~~ytG~vq~~~~~~~~----------p-------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~ 252 (400)
T COG4671 192 IRAKMRYTGFVQRSLPHLPL----------P-------PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHK 252 (400)
T ss_pred hhhheeEeEEeeccCcCCCC----------C-------CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcc
Confidence 2579999999322111000 0 111 134566888888765 355677776666554 3333
Q ss_pred EEEEEcCCCCCCCCCCCCCchHHH----HHhc--CCceeeeccCH-HHHhCcCCCCccccccChhHHHHHHHhCCceecc
Q 011848 315 FLWVIRPDLISGKDGENQIPEELL----EATK--ERGCIAGWVPQ-EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 387 (476)
Q Consensus 315 ~i~~~~~~~~~~~~~~~~~~~~~~----~~~~--~nv~~~~~vp~-~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 387 (476)
.+++++. ..|.... ...+ +++.+..|-.+ ..++..++. +|+-||+||++|-|.+|+|-+++
T Consensus 253 ~~ivtGP----------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 253 WLIVTGP----------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred eEEEeCC----------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEe
Confidence 4555542 2443332 2233 78889999775 558988887 99999999999999999999999
Q ss_pred ccc---cchhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhH
Q 011848 388 PSF---ADQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 388 P~~---~DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~ 429 (476)
|.. .||..-|.|+ +++|+.-++. +++++..|++++...++-
T Consensus 321 Pr~~p~eEQliRA~Rl-~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 321 PRAAPREEQLIRAQRL-EELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred ccCCCcHHHHHHHHHH-HhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 986 4999999999 6899998887 899999999999998873
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=5e-15 Score=146.54 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=100.3
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchHHH---HHhcCCceeeeccCH-HHH
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCIAGWVPQ-EEV 356 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~vp~-~~l 356 (476)
++++|++..|+.... ..+..+++++.+. +.+++++.+.+ ..+-+.+. +..++|+.+.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~--------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN--------EALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC--------HHHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 567788877887532 2245566666543 46777776422 01112222 123358999999987 479
Q ss_pred hCcCCCCccccccChhHHHHHHHhCCceecc-ccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHH
Q 011848 357 LAHSAVGGFLTHCGWNSTLESIVAGMPMICW-PSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFM 435 (476)
Q Consensus 357 l~~~~~~~~I~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~ 435 (476)
+..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+++.. .+.++|.++|.++++| +..+
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~---~~~~~l~~~i~~ll~~--~~~~ 342 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI---RDDEEVFAKTEALLQD--DMKL 342 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE---CCHHHHHHHHHHHHCC--HHHH
Confidence 999997 99999988999999999999885 6666778899888 467998866 3789999999999987 6655
Q ss_pred HHHHH
Q 011848 436 ESADR 440 (476)
Q Consensus 436 ~~a~~ 440 (476)
++..+
T Consensus 343 ~~m~~ 347 (380)
T PRK13609 343 LQMKE 347 (380)
T ss_pred HHHHH
Confidence 54443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.66 E-value=2.2e-14 Score=134.74 Aligned_cols=105 Identities=20% Similarity=0.196 Sum_probs=77.6
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchHHHH--HhcCCceeeeccCHH-HHh
Q 011848 283 QSVIYVSFGSIAVMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLE--ATKERGCIAGWVPQE-EVL 357 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vp~~-~ll 357 (476)
.+.|+|++|..... .....+++++.+. +.++.++++.. ....+.+.+ ...+|+.+..++++. ++|
T Consensus 170 ~~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~--------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSS--------NPNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCC--------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 46799999966432 2445566676654 45677777532 112233322 124688889999975 699
Q ss_pred CcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhh
Q 011848 358 AHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFV 400 (476)
Q Consensus 358 ~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~ 400 (476)
+.+++ +|++|| +|++|+++.|+|++++|...+|..||..+
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 99998 999999 99999999999999999999999999753
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=3.5e-14 Score=140.55 Aligned_cols=345 Identities=13% Similarity=0.075 Sum_probs=175.1
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
||||+|+..++.||++|.+ ++++|.++++++.+++... ..+++... ...+.++.++ . ..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~l~----~------~g 59 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG--PRMQAAGC--------ESLFDMEELA----V------MG 59 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc--HHHHhCCC--------ccccCHHHhh----h------cc
Confidence 4699999999999999999 9999999988888887533 12333211 0012222111 0 01
Q ss_pred hHHHHHHH--HhhCcHHHHHHHHcCCCCceEEEecCC-cccH--HHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCC
Q 011848 86 FPELVDSL--NCATPPLLKEMVSDSKSPVNCIITDGY-MSRA--IDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGE 160 (476)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~ll~~~~~~~D~Ii~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
+...+... .......++++++++ +||+|+.-.. ..+. ...|...|||++.+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~------------------ 119 (380)
T PRK00025 60 LVEVLPRLPRLLKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS------------------ 119 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc------------------
Confidence 11111111 111344567788886 9999886322 2333 334778899988652110
Q ss_pred CCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCC
Q 011848 161 LPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCP 240 (476)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 240 (476)
.+.+.++ ..... ...++.+++.+... . ++.+. .--
T Consensus 120 -----------~~~~~~~----------------------~~~~~------~~~~d~i~~~~~~~--~---~~~~~-~g~ 154 (380)
T PRK00025 120 -----------VWAWRQG----------------------RAFKI------AKATDHVLALFPFE--A---AFYDK-LGV 154 (380)
T ss_pred -----------hhhcCch----------------------HHHHH------HHHHhhheeCCccC--H---HHHHh-cCC
Confidence 0000000 00000 02233334433211 1 11122 212
Q ss_pred CeeeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCcE
Q 011848 241 NIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSF 315 (476)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~ 315 (476)
++.++|-...+..... .....+.+.+.-..++++|.+..||...........+++++..+ +.++
T Consensus 155 ~~~~~G~p~~~~~~~~-----------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ 223 (380)
T PRK00025 155 PVTFVGHPLADAIPLL-----------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRF 223 (380)
T ss_pred CeEEECcCHHHhcccc-----------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 3667773322111000 01111222222122456677777776532222234444444332 3466
Q ss_pred EEEEcCCCCCCCCCCCCCchHHHHHh----cCCceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccc-
Q 011848 316 LWVIRPDLISGKDGENQIPEELLEAT----KERGCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF- 390 (476)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~~~~----~~nv~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~- 390 (476)
+++.+.. ...+.+.+.. .-++.+.+ -.-..++..+|+ +|+.+|.+++ ||+++|+|+|++|..
T Consensus 224 ii~~~~~---------~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~ 290 (380)
T PRK00025 224 VLPLVNP---------KRREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVS 290 (380)
T ss_pred EEecCCh---------hhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccC
Confidence 6665311 1112222211 12333322 124668899998 9999999888 999999999998532
Q ss_pred -----c--chhhh-----hHhhhcceeeeEEec-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011848 391 -----A--DQQIN-----SRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYC 457 (476)
Q Consensus 391 -----~--DQ~~n-----a~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 457 (476)
. .|..| +..+ +..+++..+. +..+++.|.+++.++++| ++.+++..+-.+.+++.. ..+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~-~~~a~~~ 366 (380)
T PRK00025 291 PLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQEEATPEKLARALLPLLAD--GARRQALLEGFTELHQQL-RCGADER 366 (380)
T ss_pred HHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcCCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHh-CCCHHHH
Confidence 1 22222 2333 2334444444 678999999999999998 766665555444444433 2344444
Q ss_pred HHHHHHH
Q 011848 458 NLDRLVN 464 (476)
Q Consensus 458 ~~~~~i~ 464 (476)
.++.+.+
T Consensus 367 ~~~~i~~ 373 (380)
T PRK00025 367 AAQAVLE 373 (380)
T ss_pred HHHHHHH
Confidence 4444333
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=1.7e-13 Score=135.65 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=107.8
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhh--CCCcEEEEEcCCCCCCCCCCCCCchHHHHH--hcCCceeeeccCH-HH
Q 011848 281 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVH--SKKSFLWVIRPDLISGKDGENQIPEELLEA--TKERGCIAGWVPQ-EE 355 (476)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vp~-~~ 355 (476)
.++++|++..|+... ...+..+++++.+ .+.+++++++.+ ..+-+.+.+. ..+++.+.+|+++ .+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~--------~~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS--------KELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC--------HHHHHHHHHHhccCCCeEEEeccchHHH
Confidence 357788888898862 1234444444322 245676666422 1111222221 2357888899976 46
Q ss_pred HhCcCCCCccccccChhHHHHHHHhCCceecc-ccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHH
Q 011848 356 VLAHSAVGGFLTHCGWNSTLESIVAGMPMICW-PSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEF 434 (476)
Q Consensus 356 ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~ 434 (476)
++..+|+ +|+..|..|+.||+++|+|+|+. |....|..|+..+ ++.|+|+... +.+++.++|.++++| ++.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~---~~~~l~~~i~~ll~~--~~~ 341 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD---TPEEAIKIVASLTNG--NEQ 341 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC---CHHHHHHHHHHHhcC--HHH
Confidence 9999998 99998888999999999999998 6666677899999 4789998773 789999999999986 543
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011848 435 MESADRMANLAKKSVNKGGSSYCNLDRLVNDI 466 (476)
Q Consensus 435 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l 466 (476)
+ +++++..++... ..+....++.+++.+
T Consensus 342 ~---~~m~~~~~~~~~-~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 342 L---TNMISTMEQDKI-KYATQTICRDLLDLI 369 (391)
T ss_pred H---HHHHHHHHHhcC-CCCHHHHHHHHHHHh
Confidence 3 334444444311 233344444444433
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=9.4e-16 Score=133.15 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=94.2
Q ss_pred eEEEEecccccCC-HHHHHHHHHHHhh--CCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccC-HHHHhCcC
Q 011848 285 VIYVSFGSIAVMS-RDQLIEFYYGLVH--SKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVP-QEEVLAHS 360 (476)
Q Consensus 285 ~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-~~~ll~~~ 360 (476)
+|+|+.||..... .+.+..+...+.. ...+++++++..... .....+ +..+.|+.+.+|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~------~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE------ELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH------HHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH------HHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 4899999886321 1112223333322 246888888643111 111111 01226788999999 78899999
Q ss_pred CCCccccccChhHHHHHHHhCCceecccccc----chhhhhHhhhcceeeeEEec-cccCHHHHHHHHHHHHhH
Q 011848 361 AVGGFLTHCGWNSTLESIVAGMPMICWPSFA----DQQINSRFVGEVWKLGLDIK-DLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 361 ~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~----DQ~~na~r~~e~~G~g~~~~-~~~~~~~l~~ai~~~l~~ 429 (476)
++ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+. ...+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCcccCCHHHHHHHHHHHHcC
Confidence 98 999999999999999999999999988 9999999995 789999998 678899999999999986
No 42
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.43 E-value=1.7e-14 Score=121.28 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=80.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHH
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPE 88 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (476)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. +++|..++.. .... .......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~------------Gl~~~~~~~~-~~~~--~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA------------GLEFVPIPGD-SRLP--RSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT------------T-EEEESSSC-GGGG--HHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc------------CceEEEecCC-cCcC--cccchhh
Confidence 78999999999999999999999999999999999877777554 4899988754 0000 0000001
Q ss_pred HHHH------HHhhCcHHHHHHHHcC----C--CCceEEEecCCcccHHHHHHHhCCceEEEecchhhH
Q 011848 89 LVDS------LNCATPPLLKEMVSDS----K--SPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACA 145 (476)
Q Consensus 89 ~~~~------~~~~~~~~~~~ll~~~----~--~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 145 (476)
.+.. ........+.+...+. . ...|+++.+.....+..+||++|||++.....+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 1111 1111222222222222 1 367888889888899999999999999988776544
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.42 E-value=9.8e-11 Score=115.80 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=97.9
Q ss_pred CCCceEEEEecccccCCHHH-HHHHHHHHh-----hCCCcEEEEEcCCCCCCCCCCCCCchHHHHH-hcCCceeeeccCH
Q 011848 281 PKQSVIYVSFGSIAVMSRDQ-LIEFYYGLV-----HSKKSFLWVIRPDLISGKDGENQIPEELLEA-TKERGCIAGWVPQ 353 (476)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~~~~-~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vp~ 353 (476)
.++++|.+..|+........ ++.+...+. ..+.++++.++.+ ..+-+.+.+. ...++.+.+|+++
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~--------~~~~~~L~~~~~~~~v~~~G~~~~ 275 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN--------KKLQSKLESRDWKIPVKVRGFVTN 275 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC--------HHHHHHHHhhcccCCeEEEecccc
Confidence 45677777777665333222 233322220 1235566777532 1111222211 1346788899985
Q ss_pred -HHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchh-hhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhH
Q 011848 354 -EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQ-INSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERK 431 (476)
Q Consensus 354 -~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~-~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~ 431 (476)
.+++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|+.+ -++++|.++|.+++++
T Consensus 276 ~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~---~~~~~la~~i~~ll~~-- 347 (382)
T PLN02605 276 MEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS---ESPKEIARIVAEWFGD-- 347 (382)
T ss_pred HHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec---CCHHHHHHHHHHHHcC--
Confidence 569999998 999999999999999999999998776776 5888885 67999876 4889999999999974
Q ss_pred HHHHHHHHHHHHHHHH
Q 011848 432 EEFMESADRMANLAKK 447 (476)
Q Consensus 432 ~~~~~~a~~l~~~~~~ 447 (476)
. .+..++|++..++
T Consensus 348 ~--~~~~~~m~~~~~~ 361 (382)
T PLN02605 348 K--SDELEAMSENALK 361 (382)
T ss_pred C--HHHHHHHHHHHHH
Confidence 1 2233445555544
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.41 E-value=8.8e-11 Score=115.85 Aligned_cols=334 Identities=15% Similarity=0.081 Sum_probs=177.0
Q ss_pred CCccCHHHHHHHHHHHHh--CCCEEE---EEeCccchhhHhhcccccccccccCCCe-eEEEcCCCCCCCCCCCCCChHH
Q 011848 15 PAVGHVNSMLNLAELLGH--AGIKIT---FLNTEHYYDRVIRHSSDAFSRYMQIPGF-QFKTLTDGLPRDHPRTPDKFPE 88 (476)
Q Consensus 15 ~~~GH~~p~l~La~~L~~--rGH~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (476)
.+.|-=.-.++|+++|.+ .|++|. |++....++ +.. .|.+ .+.. ++.+.+.. ..+..
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~---------ip~~g~~~~----~~sgg~~~-~~~~~ 67 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLG---------IPIIGPTKE----LPSGGFSY-QSLRG 67 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCC---------CceeCCCCC----CCCCCccC-CCHHH
Confidence 345555677899999998 699999 999865432 211 1111 2222 23332211 12222
Q ss_pred HHHHHH----hhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCCC
Q 011848 89 LVDSLN----CATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIK 164 (476)
Q Consensus 89 ~~~~~~----~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 164 (476)
.+.... ..+.. ...+++++..+||+||+-.-+. +..+|...|+|++.+.+.-.-... .- ..+ .+..
T Consensus 68 ~~~~~~~gl~~~~~~-~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~------~~-~~~-~~~~ 137 (396)
T TIGR03492 68 LLRDLRAGLVGLTLG-QWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW------ES-GPR-RSPS 137 (396)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee------cC-CCC-Cccc
Confidence 222222 21222 2344444434899999665554 888999999999996554211100 00 000 0000
Q ss_pred CCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCeee
Q 011848 165 GTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYS 244 (476)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~ 244 (476)
+....++|... .. + + ..... -..++.+++.+- ...++++. .--++.+
T Consensus 138 ------~~~~~~~G~~~-~p----------------~-e-~n~l~--~~~a~~v~~~~~-----~t~~~l~~-~g~k~~~ 184 (396)
T TIGR03492 138 ------DEYHRLEGSLY-LP----------------W-E-RWLMR--SRRCLAVFVRDR-----LTARDLRR-QGVRASY 184 (396)
T ss_pred ------hhhhccCCCcc-CH----------------H-H-HHHhh--chhhCEEeCCCH-----HHHHHHHH-CCCeEEE
Confidence 00111122111 10 1 1 00011 133455555442 12233344 3347999
Q ss_pred eccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC----CCcEEEEEc
Q 011848 245 IGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS----KKSFLWVIR 320 (476)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~ 320 (476)
||-...+.-.. .... -+ ..++++|.+-.||....-...+..+++++..+ +..|++.+.
T Consensus 185 vGnPv~d~l~~-------------~~~~---~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~ 246 (396)
T TIGR03492 185 LGNPMMDGLEP-------------PERK---PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIV 246 (396)
T ss_pred eCcCHHhcCcc-------------cccc---cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 99444332210 0000 12 22567899999998643333444555555553 567787773
Q ss_pred CCCCCCCCCCCCCchHHHH-Hh--------------cCCceeeeccC-HHHHhCcCCCCccccccChhHHHHHHHhCCce
Q 011848 321 PDLISGKDGENQIPEELLE-AT--------------KERGCIAGWVP-QEEVLAHSAVGGFLTHCGWNSTLESIVAGMPM 384 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~-~~--------------~~nv~~~~~vp-~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~ 384 (476)
.+. ....+...+.+ .. .+++.+..+.. ..+++..+++ +|+-+|..| .|++..|+|+
T Consensus 247 ~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~ 318 (396)
T TIGR03492 247 PSL-----SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPV 318 (396)
T ss_pred CCC-----CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCE
Confidence 210 00011111110 00 01244545543 4669999998 999999777 9999999999
Q ss_pred eccccccchhhhhHhhhcce----eeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHH
Q 011848 385 ICWPSFADQQINSRFVGEVW----KLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESAD 439 (476)
Q Consensus 385 l~~P~~~DQ~~na~r~~e~~----G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~ 439 (476)
|++|.-..|. |+..+ ++. |.++.+. +.+.+.|.+++.++++| +..+++..
T Consensus 319 Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~-~~~~~~l~~~l~~ll~d--~~~~~~~~ 372 (396)
T TIGR03492 319 IQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA-SKNPEQAAQVVRQLLAD--PELLERCR 372 (396)
T ss_pred EEEeCCCCHH-HHHHH-HhhHhhcCCEEecC-CCCHHHHHHHHHHHHcC--HHHHHHHH
Confidence 9999766676 98776 443 6666664 34559999999999987 66554444
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.29 E-value=6.9e-09 Score=101.49 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=96.6
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHH---Hh
Q 011848 283 QSVIYVSFGSIAV-MSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEE---VL 357 (476)
Q Consensus 283 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~---ll 357 (476)
++.+++..|+... ...+.+..++..+... +.++++..... ..+.+. ...+|+.+.+|+++.+ ++
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~----------~~~~~~-~~~~~v~~~g~~~~~~~~~~~ 264 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP----------ARARLE-ARYPNVHFLGFLDGEELAAAY 264 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc----------hHHHHh-ccCCcEEEEeccCHHHHHHHH
Confidence 4556677787642 2233333334444332 34555554311 111111 2457899999998655 78
Q ss_pred CcCCCCccccccC----hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHH
Q 011848 358 AHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEE 433 (476)
Q Consensus 358 ~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~ 433 (476)
..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +..+.|...+ ..+.+++.++|.+++++ ++
T Consensus 265 ~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~-~~~~~~l~~~i~~l~~~--~~ 334 (364)
T cd03814 265 ASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVE-PGDAEAFAAALAALLAD--PE 334 (364)
T ss_pred HhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcC-CCCHHHHHHHHHHHHcC--HH
Confidence 88987 776654 478999999999999877543 44556 4567887774 45778899999999997 66
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011848 434 FMESADRMANLAKKSVNKGGSSYCNLDRLVN 464 (476)
Q Consensus 434 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~ 464 (476)
.+++..+-+....+ .-+.+..++++++
T Consensus 335 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 361 (364)
T cd03814 335 LRRRMAARARAEAE----RRSWEAFLDNLLE 361 (364)
T ss_pred HHHHHHHHHHHHHh----hcCHHHHHHHHHH
Confidence 66555544444443 2343444444443
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.25 E-value=6.1e-08 Score=98.59 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=85.1
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchHHHHH-hcCCceeeeccCHHH---HhC
Q 011848 284 SVIYVSFGSIAVMSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLEA-TKERGCIAGWVPQEE---VLA 358 (476)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vp~~~---ll~ 358 (476)
..+++..|+.. ....+..++++++.. +.+++++.+ |. ..+.+.+. ...++.+.+++++.+ ++.
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~-------G~---~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGD-------GP---YREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeC-------Ch---HHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 44556678775 233356667777665 456665543 11 11222221 135788889998644 778
Q ss_pred cCCCCcccccc----ChhHHHHHHHhCCceeccccccchhhhhHhhhcc---eeeeEEeccccCHHHHHHHHHHHHhHhH
Q 011848 359 HSAVGGFLTHC----GWNSTLESIVAGMPMICWPSFADQQINSRFVGEV---WKLGLDIKDLCDRNIVEKAVNDLMVERK 431 (476)
Q Consensus 359 ~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~---~G~g~~~~~~~~~~~l~~ai~~~l~~~~ 431 (476)
.+++ +|.-. -..++.||+++|+|+|+....+ ....+ +. -+.|..++ .-+.+++.++|.++++|
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~-~~d~~~la~~i~~ll~~-- 400 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYT-PGDVDDCVEKLETLLAD-- 400 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeC-CCCHHHHHHHHHHHHhC--
Confidence 8887 66432 2457999999999999875432 22223 33 46777774 34789999999999986
Q ss_pred HHHHHHHHHHHH
Q 011848 432 EEFMESADRMAN 443 (476)
Q Consensus 432 ~~~~~~a~~l~~ 443 (476)
+..+++..+-++
T Consensus 401 ~~~~~~~~~~a~ 412 (465)
T PLN02871 401 PELRERMGAAAR 412 (465)
T ss_pred HHHHHHHHHHHH
Confidence 555544433333
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=2.9e-09 Score=94.97 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=105.7
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHH--hcCCceeeeccC-HHHHhC
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA--TKERGCIAGWVP-QEEVLA 358 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vp-~~~ll~ 358 (476)
++.-|+|++|..- +..+...++..+.+.++.+-++++. .....+.+..+ ..+|+.+..... ...|+.
T Consensus 157 ~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs--------~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMk 226 (318)
T COG3980 157 PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGS--------SNPTLKNLRKRAEKYPNINLYIDTNDMAELMK 226 (318)
T ss_pred chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecC--------CCcchhHHHHHHhhCCCeeeEecchhHHHHHH
Confidence 4556999999762 3345677888888888777677742 11233333322 346777665555 455999
Q ss_pred cCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHH
Q 011848 359 HSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESA 438 (476)
Q Consensus 359 ~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a 438 (476)
.+++ .|+-||+ |++|++.-|+|.+++|+...|---|... +.+|+-..+.-.++......-+.++.+| ...|++.
T Consensus 227 e~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~l~~~~~~~~~~~i~~d--~~~rk~l 300 (318)
T COG3980 227 EADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYHLKDLAKDYEILQIQKD--YARRKNL 300 (318)
T ss_pred hcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCCCchHHHHHHHHHhhhC--HHHhhhh
Confidence 9997 8888776 8999999999999999999999999999 5788888776237777777778888887 6666665
Q ss_pred HHHHH
Q 011848 439 DRMAN 443 (476)
Q Consensus 439 ~~l~~ 443 (476)
-.-.+
T Consensus 301 ~~~~~ 305 (318)
T COG3980 301 SFGSK 305 (318)
T ss_pred hhccc
Confidence 44433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.20 E-value=4.6e-08 Score=95.39 Aligned_cols=140 Identities=20% Similarity=0.141 Sum_probs=82.8
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHH---Hh
Q 011848 282 KQSVIYVSFGSIAV-MSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEE---VL 357 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~---ll 357 (476)
.++.+++..|+... ...+.+...+..+...+.++++..... . ...........+++.+.+++++.+ ++
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~-------~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 260 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGL-------E-LEEESYELEGDPRVEFLGAYPQEEIDDFY 260 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCch-------h-hhHHHHhhcCCCeEEEeCCCCHHHHHHHH
Confidence 45566777887652 222333333333332345655554321 0 000100001347888999997544 68
Q ss_pred CcCCCCcccc----ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHH
Q 011848 358 AHSAVGGFLT----HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKE 432 (476)
Q Consensus 358 ~~~~~~~~I~----HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~ 432 (476)
..+++ +|. ..| ..++.||+++|+|+|+.+. ..+...+ +..+.|..++ .-+.+++.+++.+++++ +
T Consensus 261 ~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~-~~d~~~l~~~i~~l~~~--~ 330 (359)
T cd03823 261 AEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFP-PGDAEDLAAALERLIDD--P 330 (359)
T ss_pred HhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEEC-CCCHHHHHHHHHHHHhC--h
Confidence 88887 662 233 4489999999999998654 3455556 4445677774 34689999999999986 5
Q ss_pred HHHHHHH
Q 011848 433 EFMESAD 439 (476)
Q Consensus 433 ~~~~~a~ 439 (476)
..+++..
T Consensus 331 ~~~~~~~ 337 (359)
T cd03823 331 DLLERLR 337 (359)
T ss_pred HHHHHHH
Confidence 5444433
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.20 E-value=1.4e-08 Score=99.91 Aligned_cols=143 Identities=23% Similarity=0.194 Sum_probs=85.6
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchHHH----HHhcCCceeeeccCHHH
Q 011848 282 KQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS-KKSFLWVIRPDLISGKDGENQIPEELL----EATKERGCIAGWVPQEE 355 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~nv~~~~~vp~~~ 355 (476)
.++.+++..|+... ...+.+...+..+... +.++++... +. ..+.+. ....+|+.+.+++++.+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~-------~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~ 287 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGD-------GP---EKEELKELAKALGLDNVTFLGRVPKEE 287 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCC-------cc---cHHHHHHHHHHcCCCcEEEeCCCChHH
Confidence 45667778888752 2333344444444333 445544432 11 112221 12347888999998654
Q ss_pred ---HhCcCCCCccccccC---------hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHH
Q 011848 356 ---VLAHSAVGGFLTHCG---------WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAV 423 (476)
Q Consensus 356 ---ll~~~~~~~~I~HgG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai 423 (476)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|..++ .-+.+++.++|
T Consensus 288 ~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~-~~~~~~l~~~i 359 (394)
T cd03794 288 LPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVP-PGDPEALAAAI 359 (394)
T ss_pred HHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeC-CCCHHHHHHHH
Confidence 6788887 553222 334799999999999988765433 33 2335666664 23889999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHH
Q 011848 424 NDLMVERKEEFMESADRMANL 444 (476)
Q Consensus 424 ~~~l~~~~~~~~~~a~~l~~~ 444 (476)
.++++| +..+++..+-+..
T Consensus 360 ~~~~~~--~~~~~~~~~~~~~ 378 (394)
T cd03794 360 LELLDD--PEERAEMGENGRR 378 (394)
T ss_pred HHHHhC--hHHHHHHHHHHHH
Confidence 999986 5555544444433
No 50
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.14 E-value=1.7e-07 Score=93.94 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCceeeeccCHHH---HhCcCCCCccccccCh------hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccc
Q 011848 343 ERGCIAGWVPQEE---VLAHSAVGGFLTHCGW------NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 413 (476)
Q Consensus 343 ~nv~~~~~vp~~~---ll~~~~~~~~I~HgG~------gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~ 413 (476)
+|+.+.+|+|+.+ ++..+++.++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++ .
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~-~ 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVE-P 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeC-C
Confidence 4788889998654 7888887444444332 2478999999999998643211 11233 3 5677664 3
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 414 CDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 414 ~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
-+.++++++|.+++++ +..+++..+-+..... ..=+....++.+++.+.
T Consensus 358 ~d~~~la~~i~~l~~~--~~~~~~~~~~a~~~~~---~~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 358 ESVEALVAAIAALARQ--ALLRPKLGTVAREYAE---RTLDKENVLRQFIADIR 406 (412)
T ss_pred CCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHH
Confidence 5789999999999986 4443333332222211 12333445555555443
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.14 E-value=1e-07 Score=94.74 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=63.1
Q ss_pred cCCceeeeccCHHH---HhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+|+.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+.... .....+ +..+.|..++ ..
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~-~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVD-PR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeC-CC
Confidence 36888899999765 5888887 6643 3246899999999999876543 244456 4556788774 34
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFMESA 438 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~a 438 (476)
+.+++.++|.+++++ +..+++.
T Consensus 354 ~~~~l~~~i~~l~~~--~~~~~~~ 375 (398)
T cd03800 354 DPEALAAALRRLLTD--PALRRRL 375 (398)
T ss_pred CHHHHHHHHHHHHhC--HHHHHHH
Confidence 799999999999986 5444333
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=5.9e-08 Score=95.61 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=61.4
Q ss_pred cCCceeeeccCH-HHHhCcCCCCccc----cccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFL----THCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I----~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
.+++.+.++.++ ..++..+++ +| +-|...++.||+++|+|+|+... ...+..+ +.-..|..++ .-+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~-~~~~ 323 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVD-VGDV 323 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcC-CCCH
Confidence 357888888775 558888887 55 22345599999999999998543 3445555 3435666553 3478
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHH
Q 011848 417 NIVEKAVNDLMVERKEEFMESADR 440 (476)
Q Consensus 417 ~~l~~ai~~~l~~~~~~~~~~a~~ 440 (476)
+++.+++.+++++ +..+++..+
T Consensus 324 ~~l~~~i~~l~~~--~~~~~~~~~ 345 (371)
T cd04962 324 EAMAEYALSLLED--DELWQEFSR 345 (371)
T ss_pred HHHHHHHHHHHhC--HHHHHHHHH
Confidence 9999999999986 554444333
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.12 E-value=2.4e-07 Score=90.03 Aligned_cols=327 Identities=16% Similarity=0.071 Sum_probs=166.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChH
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (476)
||++++....|+......++++|.++||+|++++.......... ..++.+..++..... ....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------~~~~ 63 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE-----------ALGVKVIPIPLDRRG------INPF 63 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc-----------cCCceEEeccccccc------cChH
Confidence 68888888889999999999999999999999998654332111 223555555421100 0111
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc--cHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCCCC
Q 011848 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKG 165 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (476)
..+... ..+..++++. +||+|++..... .+..++...+.|.+.......... .
T Consensus 64 ~~~~~~-----~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~- 118 (359)
T cd03808 64 KDLKAL-----LRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV-----------------F- 118 (359)
T ss_pred hHHHHH-----HHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-----------------h-
Confidence 111111 2345566665 999999875433 234444545655555432210000 0
Q ss_pred CcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCC---CCe
Q 011848 166 TEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSC---PNI 242 (476)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~~~ 242 (476)
. .. .. .........+. ....++.+++.+....+. .+.... ...
T Consensus 119 ------------~-~~-~~-------------~~~~~~~~~~~--~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~ 164 (359)
T cd03808 119 ------------T-SG-GL-------------KRRLYLLLERL--ALRFTDKVIFQNEDDRDL-----ALKLGIIKKKKT 164 (359)
T ss_pred ------------c-cc-hh-------------HHHHHHHHHHH--HHhhccEEEEcCHHHHHH-----HHHhcCCCcCce
Confidence 0 00 00 00001111111 124557777777433221 122011 122
Q ss_pred eeeccccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccc-cCCHHHHHHHHHHHhh--CCCcEEEEE
Q 011848 243 YSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIA-VMSRDQLIEFYYGLVH--SKKSFLWVI 319 (476)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~--~~~~~i~~~ 319 (476)
..+.|...+..... .... . ...++.+++..|+.. ....+.+...+..+.+ .+.++++..
T Consensus 165 ~~~~~~~~~~~~~~-----------~~~~----~---~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G 226 (359)
T cd03808 165 VLIPGSGVDLDRFS-----------PSPE----P---IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVG 226 (359)
T ss_pred EEecCCCCChhhcC-----------cccc----c---cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 23322222111000 0000 0 124567888888765 2233333444444443 234555444
Q ss_pred cCCCCCCCCCCCCCchH--HHH-HhcCCceeeeccCH-HHHhCcCCCCcccccc----ChhHHHHHHHhCCceecccccc
Q 011848 320 RPDLISGKDGENQIPEE--LLE-ATKERGCIAGWVPQ-EEVLAHSAVGGFLTHC----GWNSTLESIVAGMPMICWPSFA 391 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--~~~-~~~~nv~~~~~vp~-~~ll~~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~ 391 (476)
... ....... ..+ ...+++.+.++..+ ..++..+++ +|.-+ -.+++.||+++|+|+|+.+..
T Consensus 227 ~~~-------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~- 296 (359)
T cd03808 227 DGD-------EENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP- 296 (359)
T ss_pred CCC-------cchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC-
Confidence 321 1111110 111 12357777777553 558888997 66443 367899999999999986543
Q ss_pred chhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 011848 392 DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLA 445 (476)
Q Consensus 392 DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~ 445 (476)
.+...+ +..+.|..++ .-+.+++.++|.+++++ +..+++..+-+.+.
T Consensus 297 ---~~~~~i-~~~~~g~~~~-~~~~~~~~~~i~~l~~~--~~~~~~~~~~~~~~ 343 (359)
T cd03808 297 ---GCREAV-IDGVNGFLVP-PGDAEALADAIERLIED--PELRARMGQAARKR 343 (359)
T ss_pred ---Cchhhh-hcCcceEEEC-CCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence 234445 3446676664 34789999999999886 55554444433333
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.07 E-value=4.4e-07 Score=88.82 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=78.8
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhh--CCCcEEEEEcCCCCCCCCCCCCCchHHHH-----HhcCCceeeeccCH
Q 011848 282 KQSVIYVSFGSIAV-MSRDQLIEFYYGLVH--SKKSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQ 353 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vp~ 353 (476)
.++.+++..|+... ...+.+..++..+.. .+.++++..+.. ..+.+.+ ...+|+.+.+++|+
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~----------~~~~~~~~~~~~~~~~~v~~~g~~~~ 269 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP----------EREELEELARELGLADRVIFTGFVPR 269 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc----------hHHHHHHHHHHcCCCCcEEEeccCCh
Confidence 34556677787652 233333333433333 334555554311 1122221 13468888999987
Q ss_pred HH---HhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHH
Q 011848 354 EE---VLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDL 426 (476)
Q Consensus 354 ~~---ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~ 426 (476)
.+ ++..+++ +|.. |...++.||+++|+|+|+... ...+..+ +..+.|..++. .+. ++.+++.++
T Consensus 270 ~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~-~~~-~~~~~i~~l 340 (374)
T cd03817 270 EELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP-GDE-ALAEALLRL 340 (374)
T ss_pred HHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC-CCH-HHHHHHHHH
Confidence 54 6788887 5533 345789999999999998653 3345555 45567777752 122 899999999
Q ss_pred HhH
Q 011848 427 MVE 429 (476)
Q Consensus 427 l~~ 429 (476)
+++
T Consensus 341 ~~~ 343 (374)
T cd03817 341 LQD 343 (374)
T ss_pred HhC
Confidence 986
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.03 E-value=2.2e-07 Score=92.91 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCceee-eccCHHH---HhCcCCCCcccc-c------cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec
Q 011848 343 ERGCIA-GWVPQEE---VLAHSAVGGFLT-H------CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 411 (476)
Q Consensus 343 ~nv~~~-~~vp~~~---ll~~~~~~~~I~-H------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~ 411 (476)
+|+.+. +|+|..+ +|..+++ +|. + |--.++.||+++|+|+|+... ......+ +..+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEEC
Confidence 466655 6888544 6788887 552 1 124479999999999998543 2344455 4556787773
Q ss_pred cccCHHHHHHHHHHHHhH
Q 011848 412 DLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 412 ~~~~~~~l~~ai~~~l~~ 429 (476)
+.++|+++|.++++|
T Consensus 367 ---d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 ---DSEELAEQLIDLLSN 381 (415)
T ss_pred ---CHHHHHHHHHHHHhc
Confidence 799999999999885
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.03 E-value=1.1e-06 Score=85.55 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=65.0
Q ss_pred hcCCceeeeccCHH---HHhCcCCCCcccc----ccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccc
Q 011848 341 TKERGCIAGWVPQE---EVLAHSAVGGFLT----HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 413 (476)
Q Consensus 341 ~~~nv~~~~~vp~~---~ll~~~~~~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~ 413 (476)
..+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+ +..+.|..++ .
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~-~ 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP-P 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC-C
Confidence 45788899999743 47888887 552 3567799999999999998765 3455555 3456777664 3
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011848 414 CDRNIVEKAVNDLMVERKEEFMESADR 440 (476)
Q Consensus 414 ~~~~~l~~ai~~~l~~~~~~~~~~a~~ 440 (476)
.+.+++.++|.+++++ +..+++..+
T Consensus 326 ~~~~~l~~~i~~~~~~--~~~~~~~~~ 350 (374)
T cd03801 326 GDPEALAEAILRLLDD--PELRRRLGE 350 (374)
T ss_pred CCHHHHHHHHHHHHcC--hHHHHHHHH
Confidence 4689999999999986 555444333
No 57
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.02 E-value=7.8e-07 Score=88.61 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=60.2
Q ss_pred cCCceeeeccCHHH---HhCcCCCCccc--c-ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFL--T-HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I--~-HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+++.+.+++|+.+ ++..+++ +| + +.| ..++.||+++|+|+|+.. .......+ +.-..|..++ ..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~-~~ 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVD-FF 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcC-CC
Confidence 36788899999755 6678887 54 2 223 348999999999999864 33444555 3334566663 35
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFMES 437 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~ 437 (476)
++++++++|.+++++ ++.+++
T Consensus 352 d~~~la~~i~~ll~~--~~~~~~ 372 (396)
T cd03818 352 DPDALAAAVIELLDD--PARRAR 372 (396)
T ss_pred CHHHHHHHHHHHHhC--HHHHHH
Confidence 799999999999997 554443
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.01 E-value=8.5e-07 Score=86.97 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=59.2
Q ss_pred hcCCceeeeccC-HH---HHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecc
Q 011848 341 TKERGCIAGWVP-QE---EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 412 (476)
Q Consensus 341 ~~~nv~~~~~vp-~~---~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~ 412 (476)
...++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +..+.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeC-
Confidence 346788889998 43 46888887 6664 3357999999999999876432 222334 2334565553
Q ss_pred ccCHHHHHHHHHHHHhHhHHHHH
Q 011848 413 LCDRNIVEKAVNDLMVERKEEFM 435 (476)
Q Consensus 413 ~~~~~~l~~ai~~~l~~~~~~~~ 435 (476)
..+.+++.+++.+++++ +..+
T Consensus 314 ~~~~~~~~~~l~~l~~~--~~~~ 334 (365)
T cd03825 314 PGDPEDLAEGIEWLLAD--PDER 334 (365)
T ss_pred CCCHHHHHHHHHHHHhC--HHHH
Confidence 35789999999999986 5433
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.00 E-value=8.2e-07 Score=89.33 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=61.5
Q ss_pred HHHhCcCCCCcccc----ccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH
Q 011848 354 EEVLAHSAVGGFLT----HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 354 ~~ll~~~~~~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~ 429 (476)
..+++.+++ +|+. =||..++.||+++|+|+|+.|...++.+....+ ++.|+++.. -++++|.+++.++++|
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~---~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV---EDAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE---CCHHHHHHHHHHHhcC
Confidence 457888886 2331 134446999999999999999988888887777 356777665 3789999999999997
Q ss_pred hHHHHHHHHHHHHHHH
Q 011848 430 RKEEFMESADRMANLA 445 (476)
Q Consensus 430 ~~~~~~~~a~~l~~~~ 445 (476)
+..+++..+-+...
T Consensus 389 --~~~~~~m~~~a~~~ 402 (425)
T PRK05749 389 --PDARQAYGEAGVAF 402 (425)
T ss_pred --HHHHHHHHHHHHHH
Confidence 65554444444333
No 60
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.96 E-value=2.1e-06 Score=83.88 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=63.2
Q ss_pred cCCceeeeccCHHH---HhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+++.+.+|+++.+ ++..+++ +|.- |-..++.||+++|+|+|+.+. ......+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--
Confidence 47888899999544 5788887 4432 235689999999999998653 3344445 34 67766652
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFMESADRMANLA 445 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~ 445 (476)
+.+++.++|.+++++ +..+++..+-+++.
T Consensus 331 ~~~~~~~~i~~l~~~--~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 DVDALAAALRRALEL--PQRLKAMGENGRAL 359 (375)
T ss_pred ChHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence 449999999999997 55444444444443
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.95 E-value=1.7e-06 Score=86.47 Aligned_cols=92 Identities=16% Similarity=0.006 Sum_probs=63.4
Q ss_pred cCCceeeeccCHH---HHhCcCCCCcccc---c-cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQE---EVLAHSAVGGFLT---H-CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~---~ll~~~~~~~~I~---H-gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+++.+.+++|+. +++..+++ +|. + |...++.||+++|+|+|+.... .....+ +..+.|..++ .-
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~-~~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVD-GH 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECC-CC
Confidence 3678888999864 47888997 553 2 3345899999999999986543 233344 3445676664 34
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFMESADRMAN 443 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~a~~l~~ 443 (476)
+.++++++|.+++++ +..+++...-+.
T Consensus 354 d~~~la~~i~~~l~~--~~~~~~~~~~~~ 380 (405)
T TIGR03449 354 DPADWADALARLLDD--PRTRIRMGAAAV 380 (405)
T ss_pred CHHHHHHHHHHHHhC--HHHHHHHHHHHH
Confidence 789999999999986 555444443333
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.94 E-value=1.3e-07 Score=92.99 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=83.9
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchHHHHH--hcCCceeeeccCH--
Q 011848 283 QSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGENQIPEELLEA--TKERGCIAGWVPQ-- 353 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vp~-- 353 (476)
++.|+++++-..... ..+..+++++..+ +.++++....+ ......+.+. ..+|+.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLN--------PVVREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCC--------hHHHHHHHHHhCCCCCEEEECCCChHH
Confidence 456666554332211 3356666666553 34566654321 0111112221 2357888776664
Q ss_pred -HHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHH
Q 011848 354 -EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKE 432 (476)
Q Consensus 354 -~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~ 432 (476)
..++..+++ +|+-.|.. +.||+++|+|+|+++...++++ +.+ .|.+..+. .++++|.+++.+++++ +
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~--~d~~~i~~ai~~ll~~--~ 335 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG--TDKENITKAAKRLLTD--P 335 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC--CCHHHHHHHHHHHHhC--h
Confidence 456778886 88877654 7999999999999976665553 222 46666553 4789999999999987 7
Q ss_pred HHHHHHHH
Q 011848 433 EFMESADR 440 (476)
Q Consensus 433 ~~~~~a~~ 440 (476)
..+++...
T Consensus 336 ~~~~~~~~ 343 (365)
T TIGR00236 336 DEYKKMSN 343 (365)
T ss_pred HHHHHhhh
Confidence 66665543
No 63
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.93 E-value=1.4e-06 Score=86.88 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=53.9
Q ss_pred cCCceeeeccCHHH---HhCcCCCCcccc---ccChh-HHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+++.+.+|+|+.+ +++.+++ +|. +-|.| ++.||+++|+|+|+-...+ ....+ +. |.+... . .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~-~-~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA-E-P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec-C-C
Confidence 46688889998643 7788887 543 33444 9999999999999876542 22334 33 433333 2 2
Q ss_pred CHHHHHHHHHHHHhH
Q 011848 415 DRNIVEKAVNDLMVE 429 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~ 429 (476)
+.+++.+++.+++++
T Consensus 319 ~~~~l~~~l~~~l~~ 333 (398)
T cd03796 319 DVESIVRKLEEAISI 333 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999884
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.91 E-value=3e-06 Score=81.80 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=64.8
Q ss_pred cCCceeeeccC-HHHHhCcCCCCcccccc----ChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 342 KERGCIAGWVP-QEEVLAHSAVGGFLTHC----GWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 342 ~~nv~~~~~vp-~~~ll~~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
..++.+.++.. -..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+. .+.+....|..++ ..+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~-~~~~ 306 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVP-NGDV 306 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeC-CCCH
Confidence 35666777644 3568888887 66543 2578999999999999865443322 2323212676664 4568
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011848 417 NIVEKAVNDLMVERKEEFMESADRMANLAKK 447 (476)
Q Consensus 417 ~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~ 447 (476)
+++.++|.++++| ++.+++..+-++.+.+
T Consensus 307 ~~~~~~i~~ll~~--~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 307 EALAEALLRLMED--EELRKRMGANARESAE 335 (348)
T ss_pred HHHHHHHHHHHcC--HHHHHHHHHHHHHHHH
Confidence 9999999999998 7766665555444433
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.90 E-value=3e-06 Score=82.79 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=85.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCC-CcEEEEEcCCCCCCCCCCCCCchHHHH-----HhcCCceeeeccCHH-
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK-KSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQE- 354 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vp~~- 354 (476)
.+..+++..|+.. .......+++++.+.. .++++... |. ..+.+.+ ...+||.+.+|+|+.
T Consensus 189 ~~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~-------g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~ 256 (357)
T cd03795 189 AGRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGE-------GP---LEAELEALAAALGLLDRVRFLGRLDDEE 256 (357)
T ss_pred CCCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeC-------Ch---hHHHHHHHHHhcCCcceEEEcCCCCHHH
Confidence 3455677888765 2233555667776665 55555443 11 1122221 134789999999974
Q ss_pred --HHhCcCCCCcccc---ccCh-hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 355 --EVLAHSAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 355 --~ll~~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
.++..+++.++-+ +.|. .++.||+++|+|+|+....+... .+.+..+.|...+ .-+.+++.++|.++++
T Consensus 257 ~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~-~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 257 KAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVTGLVVP-PGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCCCceEEeC-CCCHHHHHHHHHHHHH
Confidence 4777788732223 2343 47999999999999876554433 2211135665553 3589999999999999
Q ss_pred HhHHHHHHHHH
Q 011848 429 ERKEEFMESAD 439 (476)
Q Consensus 429 ~~~~~~~~~a~ 439 (476)
| +..+++..
T Consensus 332 ~--~~~~~~~~ 340 (357)
T cd03795 332 D--PELRERLG 340 (357)
T ss_pred C--HHHHHHHH
Confidence 7 55444333
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.90 E-value=2.4e-06 Score=84.86 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred cCCceeeeccCHH---HHhCcCCCCccccc---cC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQE---EVLAHSAVGGFLTH---CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~---~ll~~~~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+|+.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-..+ ....+ ...+.|..++ .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~~--~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLCE--P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEeC--C
Confidence 4688999999975 46788887 5531 22 357899999999999864332 33345 3435676663 3
Q ss_pred CHHHHHHHHHHHHhHhHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFME 436 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~ 436 (476)
+.+++.++|.+++++ ++.++
T Consensus 350 ~~~~~a~~i~~l~~~--~~~~~ 369 (392)
T cd03805 350 TPEEFAEAMLKLAND--PDLAD 369 (392)
T ss_pred CHHHHHHHHHHHHhC--hHHHH
Confidence 789999999999986 54433
No 67
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.89 E-value=9.4e-06 Score=79.14 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=59.7
Q ss_pred cCCceeeeccCHH---HHhCcCCCCccc----cccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecccc
Q 011848 342 KERGCIAGWVPQE---EVLAHSAVGGFL----THCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~---~ll~~~~~~~~I----~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~ 414 (476)
.+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+.. .....+ +..+.|..+ ..-
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~-~~~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLV-PPG 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEE-CCC
Confidence 4688889999864 46778887 54 235677899999999999986543 334455 455556666 445
Q ss_pred CHHHHHHHHHHHHhH
Q 011848 415 DRNIVEKAVNDLMVE 429 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~ 429 (476)
+.+++.+++.+++++
T Consensus 330 ~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 DPEALAEAILRLLAD 344 (377)
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999999999996
No 68
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.85 E-value=3.4e-06 Score=80.41 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=72.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccch-hhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY-DRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
|||.|--.-.. |+.-+..+.++|.++||+|.+.+-.... ..+.+.. ++.+..+...- .+
T Consensus 1 MkIwiDi~~p~-hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y-----------g~~y~~iG~~g--------~~ 60 (335)
T PF04007_consen 1 MKIWIDITHPA-HVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY-----------GIDYIVIGKHG--------DS 60 (335)
T ss_pred CeEEEECCCch-HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc-----------CCCeEEEcCCC--------CC
Confidence 46655443332 9999999999999999999999875432 2333332 47776665211 12
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecc
Q 011848 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (476)
....+.....+. ..+.+++++. +||++|+- .+..+..+|..+|+|+|.+.-.
T Consensus 61 ~~~Kl~~~~~R~-~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 61 LYGKLLESIERQ-YKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 222233333322 3345555655 99999974 5667888999999999998654
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.84 E-value=2.5e-06 Score=83.90 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=62.8
Q ss_pred cCCceeeeccCHHH---HhCcCCCCccccc----------cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeE
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLTH----------CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 408 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~ 408 (476)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 57888889998644 5788887 5532 3367999999999999987654 355555 3457787
Q ss_pred EeccccCHHHHHHHHHHHHhHhHHHHHHH
Q 011848 409 DIKDLCDRNIVEKAVNDLMVERKEEFMES 437 (476)
Q Consensus 409 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~ 437 (476)
.++ ..+.+++.++|.+++++ +..+++
T Consensus 317 ~~~-~~d~~~l~~~i~~l~~~--~~~~~~ 342 (367)
T cd05844 317 LVP-EGDVAALAAALGRLLAD--PDLRAR 342 (367)
T ss_pred EEC-CCCHHHHHHHHHHHHcC--HHHHHH
Confidence 774 45789999999999986 554433
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.82 E-value=8.3e-06 Score=82.32 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=58.0
Q ss_pred cCCceeeeccCHHHH---hCcC----CCCcccccc---C-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEe
Q 011848 342 KERGCIAGWVPQEEV---LAHS----AVGGFLTHC---G-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 410 (476)
Q Consensus 342 ~~nv~~~~~vp~~~l---l~~~----~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~ 410 (476)
.+++.+.+++++.++ +..+ ++ ||... | ..++.||+++|+|+|+.... .....+ +....|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEe
Confidence 467777788886554 5544 55 76543 3 45999999999999987543 233344 333456666
Q ss_pred ccccCHHHHHHHHHHHHhHhHHHHHH
Q 011848 411 KDLCDRNIVEKAVNDLMVERKEEFME 436 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~~l~~~~~~~~~ 436 (476)
+ .-++++|+++|.++++| +..++
T Consensus 389 ~-~~d~~~la~~i~~ll~~--~~~~~ 411 (439)
T TIGR02472 389 D-VLDLEAIASALEDALSD--SSQWQ 411 (439)
T ss_pred C-CCCHHHHHHHHHHHHhC--HHHHH
Confidence 3 35789999999999987 55443
No 71
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.81 E-value=1.3e-06 Score=83.92 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=88.5
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhCCCc-EEEEEcCCCCCCCCCCCCCchHHHHHhcC--CceeeeccCHHHHhCc
Q 011848 283 QSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKS-FLWVIRPDLISGKDGENQIPEELLEATKE--RGCIAGWVPQEEVLAH 359 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--nv~~~~~vp~~~ll~~ 359 (476)
+++|.+--||....-...+-.++++...+..+ .++.+... . .. +.+.+...+ .+.+.+ .-.+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~--~~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------F--KG-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------C--cH-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 47899999998743334455444555443221 22222211 1 11 222221211 222222 33568999
Q ss_pred CCCCccccccChhHHHHHHHhCCceeccccc--cchhhhhHhhhc--ceeeeEEe-------------c-cccCHHHHHH
Q 011848 360 SAVGGFLTHCGWNSTLESIVAGMPMICWPSF--ADQQINSRFVGE--VWKLGLDI-------------K-DLCDRNIVEK 421 (476)
Q Consensus 360 ~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~r~~e--~~G~g~~~-------------~-~~~~~~~l~~ 421 (476)
+++ +|+-+|..|+ |++..|+|+|+ ++- .=|+.||+++.. ..|+.-.+ . +++|++.|.+
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 997 9999999999 99999999999 543 468889999841 34443222 2 5799999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHH
Q 011848 422 AVNDLMVERKEEFMESADRMANLA 445 (476)
Q Consensus 422 ai~~~l~~~~~~~~~~a~~l~~~~ 445 (476)
++.+. .. .++++...++.+.+
T Consensus 312 ~i~~~-~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 312 AYKEM-DR--EKFFKKSKELREYL 332 (347)
T ss_pred HHHHH-HH--HHHHHHHHHHHHHh
Confidence 98772 33 55666666666655
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.78 E-value=1.4e-05 Score=78.09 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=59.3
Q ss_pred hcCCceee-eccCHH---HHhCcCCCCcccc----c--cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEe
Q 011848 341 TKERGCIA-GWVPQE---EVLAHSAVGGFLT----H--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 410 (476)
Q Consensus 341 ~~~nv~~~-~~vp~~---~ll~~~~~~~~I~----H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~ 410 (476)
..+|+.+. +|+|+. .++..+++ +|. - |..+++.||+++|+|+|+.+..+ ...+ ...+.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE
Confidence 34678877 458854 47788887 552 2 44568999999999999877544 2234 234667666
Q ss_pred ccccCHHHHHHHHHHHHhHhHHHHHHH
Q 011848 411 KDLCDRNIVEKAVNDLMVERKEEFMES 437 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~~l~~~~~~~~~~ 437 (476)
+ .-+.+++.+++.+++++ +..+++
T Consensus 317 ~-~~d~~~~~~~l~~l~~~--~~~~~~ 340 (366)
T cd03822 317 P-PGDPAALAEAIRRLLAD--PELAQA 340 (366)
T ss_pred c-CCCHHHHHHHHHHHHcC--hHHHHH
Confidence 4 34689999999999986 444433
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.77 E-value=4.2e-06 Score=81.05 Aligned_cols=127 Identities=13% Similarity=-0.010 Sum_probs=77.5
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHH-HH--hcCCceeeeccCHHH---HhCc
Q 011848 286 IYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL-EA--TKERGCIAGWVPQEE---VLAH 359 (476)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~--~~~nv~~~~~vp~~~---ll~~ 359 (476)
+.+..|... .......+++++++.+.++++..... ......... +. ..+++.+.+++++.+ +++.
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~-------~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS-------DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC-------CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 445567663 22234556677777787877665421 111111111 11 257899999999754 6788
Q ss_pred CCCCcccc--ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH
Q 011848 360 SAVGGFLT--HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 360 ~~~~~~I~--HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~ 429 (476)
+++-++-+ +-| ..++.||+++|+|+|+.... .+...+ +....|..++. .+++.+++.++++.
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeCC---HHHHHHHHHHHhcc
Confidence 88722222 234 35899999999999977543 333344 34236766643 99999999988663
No 74
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.73 E-value=6.5e-07 Score=88.02 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCceEEEEecccccC-CHHHHHHHHHHHhhCCC-cEEEEEcCCCCCCCCCCCCCchHHHHHh---cCCceeeeccCHH--
Q 011848 282 KQSVIYVSFGSIAVM-SRDQLIEFYYGLVHSKK-SFLWVIRPDLISGKDGENQIPEELLEAT---KERGCIAGWVPQE-- 354 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~nv~~~~~vp~~-- 354 (476)
+++.|++++|..... ....+..+++++..... ++.+....+.. ....+.+.. +.. .+|+.+.++.++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~----~~~~l~~~~-~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR----TRPRIREAG-LEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC----hHHHHHHHH-HhhccCCCCEEEECCcCHHHH
Confidence 466788888876543 34556777777776533 24444432100 001111111 111 3677777665543
Q ss_pred -HHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHH
Q 011848 355 -EVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEE 433 (476)
Q Consensus 355 -~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~ 433 (476)
.++..+++ ||+-+| |.+.||+++|+|+|+++.. |. +..+. +.|++..+.. +.++|.++|.+++++ +.
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~~--~~~~i~~~i~~ll~~--~~ 339 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVGT--DPEAILAAIEKLLSD--EF 339 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecCC--CHHHHHHHHHHHhcC--ch
Confidence 46778887 999999 7888999999999998743 22 33443 4687766642 589999999999986 54
Q ss_pred HHHH
Q 011848 434 FMES 437 (476)
Q Consensus 434 ~~~~ 437 (476)
.+++
T Consensus 340 ~~~~ 343 (363)
T cd03786 340 AYSL 343 (363)
T ss_pred hhhc
Confidence 4433
No 75
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.70 E-value=3.8e-05 Score=74.93 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=58.3
Q ss_pred cCCceeeeccCHHH---HhCcCCCCcccc----------ccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeE
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLT----------HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 408 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~----------HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~ 408 (476)
++|+.+.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+..+ ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 57889999998544 6777887 555 244579999999999999865432 22344 4434777
Q ss_pred EeccccCHHHHHHHHHHHHhH
Q 011848 409 DIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 409 ~~~~~~~~~~l~~ai~~~l~~ 429 (476)
.++ .-+.+++.++|.+++++
T Consensus 308 ~~~-~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVP-PGDPEALADAIERLLDD 327 (355)
T ss_pred EeC-CCCHHHHHHHHHHHHhC
Confidence 764 34899999999999986
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.70 E-value=2e-05 Score=77.10 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=62.0
Q ss_pred cCCceeeeccCH-HHHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
.+|+.+.++..+ .+++..+++ +|.- |..+++.||+++|+|+|+. |...+...+ +..|.... .-+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~~g~~~~---~~~~ 313 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GDSGLIVP---ISDP 313 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cCCceEeC---CCCH
Confidence 367888887764 568888887 4443 2357899999999999874 455555566 34344332 3588
Q ss_pred HHHHHHHHHHHh-HhHHHHHHHHHHHHHHHH
Q 011848 417 NIVEKAVNDLMV-ERKEEFMESADRMANLAK 446 (476)
Q Consensus 417 ~~l~~ai~~~l~-~~~~~~~~~a~~l~~~~~ 446 (476)
+++.+++.++++ + +.+++....-.+.+.
T Consensus 314 ~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~ 342 (360)
T cd04951 314 EALANKIDEILKMS--GEERDIIGARRERIV 342 (360)
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 999999999984 4 455554444333333
No 77
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.68 E-value=5.6e-05 Score=73.82 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=77.3
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchHHH---H--HhcCCceeeeccCH
Q 011848 282 KQSVIYVSFGSIAV-MSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELL---E--ATKERGCIAGWVPQ 353 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~---~--~~~~nv~~~~~vp~ 353 (476)
++..+++..|+... ...+.+...+..+... +.+++++..... .......+. + ...+++.+.+|.+.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~------~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQG------RRFYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcc------cchHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 44566777787652 2344444455555443 345555543210 001111111 1 13467888888653
Q ss_pred -HHHhCcCCCCcccc--ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 354 -EEVLAHSAVGGFLT--HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 354 -~~ll~~~~~~~~I~--HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
..++..+++-++-+ +-| .+++.||+++|+|+|+.-.. .....+ ...+.|..++ .-+.+++.++|..++.
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~~-~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLVP-PGDAEALAQALDQILS 329 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEeC-CCCHHHHHHHHHHHHh
Confidence 55888899822223 123 45999999999999876432 234445 3444677764 4588999999976654
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.68 E-value=3.5e-05 Score=74.95 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCceeeeccC-HHHHhCcCCCCccccccC----hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHH
Q 011848 343 ERGCIAGWVP-QEEVLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 417 (476)
Q Consensus 343 ~nv~~~~~vp-~~~ll~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~ 417 (476)
+++.+.+... ...++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+ +. .|..++ .-+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~-~~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVP-PGDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeC-CCCHH
Confidence 4666666554 3568888997 775443 479999999999999854 34455555 34 455553 24689
Q ss_pred HHHHHHHHHHhH
Q 011848 418 IVEKAVNDLMVE 429 (476)
Q Consensus 418 ~l~~ai~~~l~~ 429 (476)
++.++|.+++++
T Consensus 321 ~l~~~i~~l~~~ 332 (365)
T cd03807 321 ALAEAIEALLAD 332 (365)
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.65 E-value=6.8e-05 Score=80.81 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=60.0
Q ss_pred cCCceeeeccCHHH---HhCcC----CCCccccc---cC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEe
Q 011848 342 KERGCIAGWVPQEE---VLAHS----AVGGFLTH---CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 410 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~----~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~ 410 (476)
.++|.+.+++++.+ ++..+ ++ ||.- =| ..++.||+++|+|+|+-...+ ....+ +....|..+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEE
Confidence 46777888888755 45544 34 6653 23 458999999999999986533 12223 232356666
Q ss_pred ccccCHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 011848 411 KDLCDRNIVEKAVNDLMVERKEEFMESADRMA 442 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~ 442 (476)
+ .-+.+.|+++|.++++| +..+++..+-+
T Consensus 620 d-P~D~eaLA~AL~~LL~D--pelr~~m~~~g 648 (1050)
T TIGR02468 620 D-PHDQQAIADALLKLVAD--KQLWAECRQNG 648 (1050)
T ss_pred C-CCCHHHHHHHHHHHhhC--HHHHHHHHHHH
Confidence 3 45789999999999997 65554444333
No 80
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.60 E-value=2.1e-05 Score=77.21 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=77.4
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchHHHH-----HhcCCceeeeccCH--
Q 011848 283 QSVIYVSFGSIAVMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQ-- 353 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vp~-- 353 (476)
.+.+++..|.........+..+++++... +.+++++..++ ..+.+.+ ..++++.+.+|+++
T Consensus 179 ~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~----------~~~~l~~~~~~~~l~~~v~f~G~~~~~~ 248 (359)
T PRK09922 179 KPAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS----------DFEKCKAYSRELGIEQRIIWHGWQSQPW 248 (359)
T ss_pred CCcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc----------cHHHHHHHHHHcCCCCeEEEecccCCcH
Confidence 34566777876432223345566666554 34555444321 1122221 13478888898753
Q ss_pred HH---HhCcCCCCcccc--c--cChhHHHHHHHhCCceeccc-cccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHH
Q 011848 354 EE---VLAHSAVGGFLT--H--CGWNSTLESIVAGMPMICWP-SFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVND 425 (476)
Q Consensus 354 ~~---ll~~~~~~~~I~--H--gG~gs~~eal~~GvP~l~~P-~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~ 425 (476)
.. .+..+++ +|. + |-..++.||+++|+|+|+.- ..+ ....+ +....|..+ ..-+.+++.++|.+
T Consensus 249 ~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv-~~~d~~~la~~i~~ 320 (359)
T PRK09922 249 EVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELY-TPGNIDEFVGKLNK 320 (359)
T ss_pred HHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEE-CCCCHHHHHHHHHH
Confidence 22 4455676 553 2 33679999999999999875 322 11234 444467666 34589999999999
Q ss_pred HHhH
Q 011848 426 LMVE 429 (476)
Q Consensus 426 ~l~~ 429 (476)
++++
T Consensus 321 l~~~ 324 (359)
T PRK09922 321 VISG 324 (359)
T ss_pred HHhC
Confidence 9997
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.60 E-value=6.7e-05 Score=73.45 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=71.7
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCC--CcEEEEEcCCCCCCCCCCCCCchHHH--HHhcCCceeeeccCHHH---HhC
Q 011848 286 IYVSFGSIAVMSRDQLIEFYYGLVHSK--KSFLWVIRPDLISGKDGENQIPEELL--EATKERGCIAGWVPQEE---VLA 358 (476)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~vp~~~---ll~ 358 (476)
.++..|+... ......+++++.... .++++..+.+ ........+. ....++|.+.+++++.+ ++.
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~------~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~ 266 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNAD------HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLR 266 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCC------CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHH
Confidence 3456787652 222444556665543 5555544321 1111112121 12347888999999864 566
Q ss_pred cCCCCccccccCh-----hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHH
Q 011848 359 HSAVGGFLTHCGW-----NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEE 433 (476)
Q Consensus 359 ~~~~~~~I~HgG~-----gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~ 433 (476)
.+++ ++-+.-. +++.||+++|+|+|+..... +...+ +. .|...+ ..+.+.++|.+++++ +.
T Consensus 267 ~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~---~~~~l~~~i~~l~~~--~~ 332 (363)
T cd04955 267 YAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFK---VGDDLASLLEELEAD--PE 332 (363)
T ss_pred hCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEec---CchHHHHHHHHHHhC--HH
Confidence 6676 5443322 47999999999999875432 22223 23 233332 112299999999986 54
Q ss_pred HHHH
Q 011848 434 FMES 437 (476)
Q Consensus 434 ~~~~ 437 (476)
.+++
T Consensus 333 ~~~~ 336 (363)
T cd04955 333 EVSA 336 (363)
T ss_pred HHHH
Confidence 4433
No 82
>PLN02275 transferase, transferring glycosyl groups
Probab=98.60 E-value=4.8e-05 Score=74.98 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=52.6
Q ss_pred CCceee-eccCHHH---HhCcCCCCcccc-c-----cC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec
Q 011848 343 ERGCIA-GWVPQEE---VLAHSAVGGFLT-H-----CG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 411 (476)
Q Consensus 343 ~nv~~~-~~vp~~~---ll~~~~~~~~I~-H-----gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~ 411 (476)
+|+.+. .|+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+.... .+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC
Confidence 456665 4788755 5889998 652 1 12 35799999999999986432 244555 4556788875
Q ss_pred cccCHHHHHHHHHHHH
Q 011848 412 DLCDRNIVEKAVNDLM 427 (476)
Q Consensus 412 ~~~~~~~l~~ai~~~l 427 (476)
+.++|+++|.++|
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 5889999998774
No 83
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.60 E-value=1.5e-05 Score=77.05 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=58.2
Q ss_pred cCCceeeeccCH-HHHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
.+++.+.++.+. .+++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +..+.|...+ .-+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~-~~~~ 316 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVP-VGDE 316 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEEC-CCCH
Confidence 467888888774 568888887 5532 3456899999999999986443 445556 4556777774 3466
Q ss_pred HHH---HHHHHHHHhHhHHHHHHHHHH
Q 011848 417 NIV---EKAVNDLMVERKEEFMESADR 440 (476)
Q Consensus 417 ~~l---~~ai~~~l~~~~~~~~~~a~~ 440 (476)
+.+ .+++.+++++ +..++++..
T Consensus 317 ~~~~~~~~~i~~~~~~--~~~~~~~~~ 341 (353)
T cd03811 317 AALAAAALALLDLLLD--PELRERLAA 341 (353)
T ss_pred HHHHHHHHHHHhccCC--hHHHHHHHH
Confidence 676 4555555555 444443333
No 84
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=6.8e-05 Score=71.94 Aligned_cols=322 Identities=15% Similarity=0.121 Sum_probs=178.5
Q ss_pred EcCCCccCHHHHHHHHHHHHhC--CCEEEEEe-CccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHH
Q 011848 12 LPLPAVGHVNSMLNLAELLGHA--GIKITFLN-TEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPE 88 (476)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (476)
+=.-|.|-++-.++|.++|.++ ++.|++-+ ++...+.+.+..+ +.+...-+| -+
T Consensus 54 iHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~---------~~v~h~YlP----~D---------- 110 (419)
T COG1519 54 IHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG---------DSVIHQYLP----LD---------- 110 (419)
T ss_pred EEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC---------CCeEEEecC----cC----------
Confidence 3345789999999999999999 88888887 5666666666643 112222222 11
Q ss_pred HHHHHHhhCcHHHHHHHHcCCCCceEEEecCCccc--HHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCCCCC
Q 011848 89 LVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSR--AIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGT 166 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 166 (476)
....++.+++.+ +||++|.--...| .+.-++..|+|.+.++-- ++..++
T Consensus 111 --------~~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------LS~rS~------ 161 (419)
T COG1519 111 --------LPIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------LSDRSF------ 161 (419)
T ss_pred --------chHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------echhhh------
Confidence 112357778888 9998774434444 444577889999997331 000000
Q ss_pred cccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHhcCCCCeeeec
Q 011848 167 EDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRNHSCPNIYSIG 246 (476)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vG 246 (476)
.+ +. ......... ....++++..+-.+-+-- +..-.+++...|
T Consensus 162 ----------~~------y~-------------k~~~~~~~~---~~~i~li~aQse~D~~Rf-----~~LGa~~v~v~G 204 (419)
T COG1519 162 ----------AR------YA-------------KLKFLARLL---FKNIDLILAQSEEDAQRF-----RSLGAKPVVVTG 204 (419)
T ss_pred ----------HH------HH-------------HHHHHHHHH---HHhcceeeecCHHHHHHH-----HhcCCcceEEec
Confidence 00 00 000111111 144566666664332211 220124477777
Q ss_pred cccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCC--CcEEEEEcCCCC
Q 011848 247 PLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK--KSFLWVIRPDLI 324 (476)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~ 324 (476)
-+=.+....+ .....-+.+...+.. + ..+.|..+| ...+.+.+-...+++.+.. ...||+ ..+..
T Consensus 205 NlKfd~~~~~--------~~~~~~~~~r~~l~~--~-r~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlV-PRHpE 271 (419)
T COG1519 205 NLKFDIEPPP--------QLAAELAALRRQLGG--H-RPVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILV-PRHPE 271 (419)
T ss_pred ceeecCCCCh--------hhHHHHHHHHHhcCC--C-CceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEe-cCChh
Confidence 6654322111 000111123333331 2 345566666 3344455556666666543 334443 22100
Q ss_pred C---------CCC------CCCCCchHHHHHhcCCceeeeccC-HHHHhCcCCC----CccccccChhHHHHHHHhCCce
Q 011848 325 S---------GKD------GENQIPEELLEATKERGCIAGWVP-QEEVLAHSAV----GGFLTHCGWNSTLESIVAGMPM 384 (476)
Q Consensus 325 ~---------~~~------~~~~~~~~~~~~~~~nv~~~~~vp-~~~ll~~~~~----~~~I~HgG~gs~~eal~~GvP~ 384 (476)
. ..| +..+.+. ...+|.+.+-+- ...++.-+++ +=++-+||+| ..|++++|+|+
T Consensus 272 Rf~~v~~l~~~~gl~~~~rS~~~~~~-----~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pv 345 (419)
T COG1519 272 RFKAVENLLKRKGLSVTRRSQGDPPF-----SDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPV 345 (419)
T ss_pred hHHHHHHHHHHcCCeEEeecCCCCCC-----CCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCE
Confidence 0 000 0000110 123566665554 4456666665 2245599998 67999999999
Q ss_pred eccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011848 385 ICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKK 447 (476)
Q Consensus 385 l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~ 447 (476)
+.=|++.-|.+-++++ ++.|.|+.++ +++.|.+++..+++| +..+++..+-+..+-.
T Consensus 346 i~Gp~~~Nf~ei~~~l-~~~ga~~~v~---~~~~l~~~v~~l~~~--~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 346 IFGPYTFNFSDIAERL-LQAGAGLQVE---DADLLAKAVELLLAD--EDKREAYGRAGLEFLA 402 (419)
T ss_pred EeCCccccHHHHHHHH-HhcCCeEEEC---CHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999 5789999995 388888888888886 5555544444444443
No 85
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.54 E-value=5.9e-05 Score=73.66 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=63.4
Q ss_pred hcCCceeeeccCHH---HHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccc
Q 011848 341 TKERGCIAGWVPQE---EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 413 (476)
Q Consensus 341 ~~~nv~~~~~vp~~---~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~ 413 (476)
..+|+.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ++. |..+. .
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~~--~~~~~-~ 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GDA--ALYFD-P 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cCc--eeeeC-C
Confidence 45788888999865 46788887 4422 3456899999999999985432 122223 232 33343 2
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 011848 414 CDRNIVEKAVNDLMVERKEEFMESADRMANLAK 446 (476)
Q Consensus 414 ~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~ 446 (476)
-+.+++.++|.++++| +..+++..+-+....
T Consensus 321 ~~~~~~~~~i~~l~~~--~~~~~~~~~~~~~~~ 351 (365)
T cd03809 321 LDPEALAAAIERLLED--PALREELRERGLARA 351 (365)
T ss_pred CCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence 4789999999999987 777766665555433
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.43 E-value=0.00059 Score=67.62 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=77.8
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchHHHHH---h---cCCceee-eccCH
Q 011848 283 QSVIYVSFGSIAVMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLEA---T---KERGCIA-GWVPQ 353 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~nv~~~-~~vp~ 353 (476)
...+++..|.... ...+..++++++.. +.++++..+.. ....+.+.+.+. . ..++.+. +++++
T Consensus 200 ~~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 200 SRPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAP------DTPEVAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred CceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCC------CcHHHHHHHHHHHHHhccccCceEEecCCCCH
Confidence 3446677787652 22345555666554 45655554321 100111112111 1 1235544 67875
Q ss_pred H---HHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-cccC----HHHHHH
Q 011848 354 E---EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD----RNIVEK 421 (476)
Q Consensus 354 ~---~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~----~~~l~~ 421 (476)
. .++..+++ +|.= |...++.||+++|+|+|+.... .....+ +..+.|..++ ...+ .+++.+
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPPDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCCCCCcccchHHHHHH
Confidence 3 46888887 5542 3345779999999999986543 344445 3445677775 3221 289999
Q ss_pred HHHHHHhHhHHHHHHH
Q 011848 422 AVNDLMVERKEEFMES 437 (476)
Q Consensus 422 ai~~~l~~~~~~~~~~ 437 (476)
+|.++++| +.-+++
T Consensus 345 ~i~~l~~~--~~~~~~ 358 (388)
T TIGR02149 345 AINILLAD--PELAKK 358 (388)
T ss_pred HHHHHHhC--HHHHHH
Confidence 99999886 544433
No 87
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.40 E-value=0.0002 Score=69.93 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=81.1
Q ss_pred CCceEEEEecccc-cCCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchHHHH-----HhcCCceeeeccCH
Q 011848 282 KQSVIYVSFGSIA-VMSRDQLIEFYYGLVHS--KKSFLWVIRPDLISGKDGENQIPEELLE-----ATKERGCIAGWVPQ 353 (476)
Q Consensus 282 ~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vp~ 353 (476)
+++.+++..|+.. ....+.+...+..+.+. +.+++++.. |. ..+.+.+ ...+++.+.++..+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~-------g~---~~~~~~~~~~~~~~~~~v~~~g~~~~ 259 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGD-------GE---LEEEIKKKVKELGLEDKVIFLGVRND 259 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeC-------Cc---hHHHHHHHHHhcCCCCcEEEecccCC
Confidence 4556677778765 22233333344444332 345555432 11 1111111 13467888887554
Q ss_pred -HHHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 354 -EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 354 -~~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
.+++..+++ +|.- |-..+++||+++|+|+|+....+ ....+ +. +.+.... .-++++++++|.++++
T Consensus 260 ~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~-~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 260 VPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL-DESPEIWAEEILKLKS 330 (358)
T ss_pred HHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC-CCCHHHHHHHHHHHHh
Confidence 568888887 5532 45679999999999999865433 33344 34 5554443 3357999999999999
Q ss_pred HhHHHHHHHH
Q 011848 429 ERKEEFMESA 438 (476)
Q Consensus 429 ~~~~~~~~~a 438 (476)
+ +..+++.
T Consensus 331 ~--~~~~~~~ 338 (358)
T cd03812 331 E--DRRERSS 338 (358)
T ss_pred C--cchhhhh
Confidence 7 6655444
No 88
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.38 E-value=0.00038 Score=70.86 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=74.2
Q ss_pred CceEEEEecccc-cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHH---HHHhcCCcee-eeccCH--HH
Q 011848 283 QSVIYVSFGSIA-VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEEL---LEATKERGCI-AGWVPQ--EE 355 (476)
Q Consensus 283 ~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~-~~~vp~--~~ 355 (476)
+..+++..|... ....+.+...+..+.+.+.++++..+++ . ...+.+ .++.+.++.+ .+|-.. ..
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~-------~-~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGD-------P-ELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCc-------H-HHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 445667778765 2223333332222323366777664311 0 111222 2334556554 365322 25
Q ss_pred HhCcCCCCcccc---ccChh-HHHHHHHhCCceeccccc--cchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 356 VLAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSF--ADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 356 ll~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~--~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
++..+++ +|. +-|.| +.+||+++|+|.|+.-.. .|...+...-. ..+.|..++ .-++++|.++|.++++
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~-~~~~G~lv~-~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPED-GEATGFVFD-DFNAEDLLRALRRALE 427 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCC-CCCceEEeC-CCCHHHHHHHHHHHHH
Confidence 7888997 653 34554 889999999999886433 23221111111 226777774 4578999999999886
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.38 E-value=0.0014 Score=69.27 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=49.3
Q ss_pred cCCceeeecc-CH---HHHhCc----CCCCcccc---ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEE
Q 011848 342 KERGCIAGWV-PQ---EEVLAH----SAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD 409 (476)
Q Consensus 342 ~~nv~~~~~v-p~---~~ll~~----~~~~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~ 409 (476)
.++|.+.++. +. .+++.+ +++ ||. .=| .-++.||+++|+|+|+.-..+ .+..+ +.-..|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEE
Confidence 3677777764 32 234432 234 553 223 459999999999999865432 33344 33345777
Q ss_pred eccccCHHHHHHHHHHHH
Q 011848 410 IKDLCDRNIVEKAVNDLM 427 (476)
Q Consensus 410 ~~~~~~~~~l~~ai~~~l 427 (476)
++ .-++++++++|.+++
T Consensus 691 Vd-p~D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 ID-PYHGEEAAEKIVDFF 707 (784)
T ss_pred eC-CCCHHHHHHHHHHHH
Confidence 74 347889999998876
No 90
>PLN00142 sucrose synthase
Probab=98.37 E-value=0.00012 Score=77.17 Aligned_cols=89 Identities=10% Similarity=0.154 Sum_probs=52.8
Q ss_pred CCceeee----ccCHHHHhC----cCCCCcccc---ccChh-HHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEe
Q 011848 343 ERGCIAG----WVPQEEVLA----HSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDI 410 (476)
Q Consensus 343 ~nv~~~~----~vp~~~ll~----~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~ 410 (476)
++|.+.+ .++..++.. .+++ ||. +-|.| ++.||+++|+|+|+....+ ....+ +.-..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEe
Confidence 5565544 334444543 2344 654 34555 8999999999999865432 33344 343457777
Q ss_pred ccccCHHHHHHHHHHHH----hHhHHHHHHHHHHH
Q 011848 411 KDLCDRNIVEKAVNDLM----VERKEEFMESADRM 441 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~~l----~~~~~~~~~~a~~l 441 (476)
+ .-+.++++++|.+++ +| +..+++..+-
T Consensus 715 ~-P~D~eaLA~aI~~lLekLl~D--p~lr~~mg~~ 746 (815)
T PLN00142 715 D-PYHGDEAANKIADFFEKCKED--PSYWNKISDA 746 (815)
T ss_pred C-CCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence 4 347788888877654 55 5555544433
No 91
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.36 E-value=0.00052 Score=68.61 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=51.6
Q ss_pred eeeccCHHHHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHH
Q 011848 347 IAGWVPQEEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKA 422 (476)
Q Consensus 347 ~~~~vp~~~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~a 422 (476)
+.++.+..+++...++ ||.- +=..++.||+++|+|+|+.-..+ | ..+ ..-+-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec---CCHHHHHHH
Confidence 3466677779988887 8776 44678999999999999886443 2 233 233444444 378899999
Q ss_pred HHHHHhH
Q 011848 423 VNDLMVE 429 (476)
Q Consensus 423 i~~~l~~ 429 (476)
+.++|++
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999984
No 92
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.35 E-value=9.5e-05 Score=74.95 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=102.3
Q ss_pred HhcCCCCeeeec-cccCcCccCCCccccCCCCcccccchhhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHh--hC
Q 011848 235 RNHSCPNIYSIG-PLNAHLKVRIPEKTYSSSSLWKIDRSCMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLV--HS 311 (476)
Q Consensus 235 ~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~--~~ 311 (476)
+. ..-++.||| |+.-..... ...++..+-+.-.+++++|-+-.||....=...+-.++++.+ ..
T Consensus 377 ~~-~gv~v~yVGHPL~d~i~~~------------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l 443 (608)
T PRK01021 377 KD-SPLRTVYLGHPLVETISSF------------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSL 443 (608)
T ss_pred Hh-cCCCeEEECCcHHhhcccC------------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44 556799999 665432100 111222233332346789999999986433444555666665 32
Q ss_pred --CCcEEEEEcCCCCCCCCCCCCCchHHHHHh-cCC---ceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCcee
Q 011848 312 --KKSFLWVIRPDLISGKDGENQIPEELLEAT-KER---GCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMI 385 (476)
Q Consensus 312 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~n---v~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l 385 (476)
+.+|++..... ...+.+.+.. ..+ +.+..--...+++..|++ .+.-+|- .+.|+...|+|||
T Consensus 444 ~~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmV 511 (608)
T PRK01021 444 ASTHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTI 511 (608)
T ss_pred ccCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEE
Confidence 34565543211 1112222212 111 122210012678999997 6666665 4679999999999
Q ss_pred ccccc-cchhhhhHhhhc----c-------e--eeeEEec---cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011848 386 CWPSF-ADQQINSRFVGE----V-------W--KLGLDIK---DLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKS 448 (476)
Q Consensus 386 ~~P~~-~DQ~~na~r~~e----~-------~--G~g~~~~---~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~ 448 (476)
++=-. .=-+.-|+++.+ . + .+-.++- ++.|++.|.+++ ++|+| +..+++.++=-+++++.
T Consensus 512 V~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d--~~~r~~~~~~l~~lr~~ 588 (608)
T PRK01021 512 VTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT--SQSKEKQKDACRDLYQA 588 (608)
T ss_pred EEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHH
Confidence 86321 111223444431 0 1 1111111 368999999997 77776 55555554444444444
Q ss_pred HhcCCChHHHHHH
Q 011848 449 VNKGGSSYCNLDR 461 (476)
Q Consensus 449 ~~~~g~~~~~~~~ 461 (476)
+.+|....+++-.
T Consensus 589 Lg~~~~~~~~~~~ 601 (608)
T PRK01021 589 MNESASTMKECLS 601 (608)
T ss_pred hcCCCCCHHHHHH
Confidence 4434443333333
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.31 E-value=0.00074 Score=66.61 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=66.2
Q ss_pred cCCceeeecc--CH---HHHhCcCCCCcccccc---C-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecc
Q 011848 342 KERGCIAGWV--PQ---EEVLAHSAVGGFLTHC---G-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 412 (476)
Q Consensus 342 ~~nv~~~~~v--p~---~~ll~~~~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~ 412 (476)
.+++.+.++. ++ .++++.+++ |+.-. | ..++.||+++|+|+|+....+ ....+ +.-..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC-
Confidence 3567777776 43 247788887 66432 2 449999999999999865432 22234 3334566553
Q ss_pred ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011848 413 LCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 466 (476)
Q Consensus 413 ~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l 466 (476)
+.+.+..+|.+++++ ++.+++..+-++..... .-+-...+.++++.+
T Consensus 323 --~~~~~a~~i~~ll~~--~~~~~~~~~~a~~~~~~---~~s~~~~~~~~~~~~ 369 (372)
T cd03792 323 --TVEEAAVRILYLLRD--PELRRKMGANAREHVRE---NFLITRHLKDYLYLI 369 (372)
T ss_pred --CcHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHH
Confidence 467788899999986 55554443333332211 334345555655544
No 94
>PLN02949 transferase, transferring glycosyl groups
Probab=98.27 E-value=0.0018 Score=65.51 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=59.0
Q ss_pred cCCceeeeccCHHH---HhCcCCCCcccc---ccChh-HHHHHHHhCCceecccccc---chhhhhHhhhccee-eeEEe
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFA---DQQINSRFVGEVWK-LGLDI 410 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~---DQ~~na~r~~e~~G-~g~~~ 410 (476)
.++|.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+ |.-.+ +..| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~-----~~~g~tG~l~ 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLD-----EDGQQTGFLA 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeec-----CCCCcccccC
Confidence 57888999998654 6778886 552 23444 7999999999999986543 11110 0002 23333
Q ss_pred ccccCHHHHHHHHHHHHh-H--hHHHHHHHHHHHHHHH
Q 011848 411 KDLCDRNIVEKAVNDLMV-E--RKEEFMESADRMANLA 445 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~~l~-~--~~~~~~~~a~~l~~~~ 445 (476)
. +.++++++|.++++ + ....+++++++.++++
T Consensus 407 -~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 407 -T--TVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred -C--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 2 88999999999987 3 1123555555544443
No 95
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.26 E-value=9e-05 Score=71.83 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=95.2
Q ss_pred CCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchHHH---HHhcCCceeeec-
Q 011848 280 QPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCIAGW- 350 (476)
Q Consensus 280 ~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~- 350 (476)
..++++|-+--||....=...+-.++++.+.. +.+|++..... ...+.+. .....++.+.-.
T Consensus 181 ~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~~~~~ 251 (373)
T PF02684_consen 181 DPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE---------VHEELIEEILAEYPPDVSIVIIE 251 (373)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH---------HHHHHHHHHHHhhCCCCeEEEcC
Confidence 34789999999998643333444445554432 34666555321 1111111 112233333322
Q ss_pred cCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccc-cchhhhhHhhhcceee------------eEEe-ccccCH
Q 011848 351 VPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF-ADQQINSRFVGEVWKL------------GLDI-KDLCDR 416 (476)
Q Consensus 351 vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~-~DQ~~na~r~~e~~G~------------g~~~-~~~~~~ 416 (476)
-.-.+++..+++ .+.-.|- .+.|+...|+|||++=-. .=-+.-|+++. +... -..+ .++.|+
T Consensus 252 ~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~PEliQ~~~~~ 327 (373)
T PF02684_consen 252 GESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVVPELIQEDATP 327 (373)
T ss_pred CchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcchhhhcccCCH
Confidence 235668888887 5555554 578999999999987322 12233444442 2221 1111 248999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011848 417 NIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYC 457 (476)
Q Consensus 417 ~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 457 (476)
+.|.+++.++|+| +..++..+...+.+++..+.|.++..
T Consensus 328 ~~i~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 328 ENIAAELLELLEN--PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 9999999999997 66677777777777776666665544
No 96
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.25 E-value=0.0014 Score=66.96 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=75.0
Q ss_pred CCceEEEEecccc-cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHH---HHhcCCceeeeccCHH---
Q 011848 282 KQSVIYVSFGSIA-VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EATKERGCIAGWVPQE--- 354 (476)
Q Consensus 282 ~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~vp~~--- 354 (476)
++..+++..|... ....+.+...+..+.+.+.++++....+ . ...+.+. ++.++|+.+....++.
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~-------~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD-------P-EYEEALRELAARYPGRVAVLIGYDEALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC-------H-HHHHHHHHHHHhCCCcEEEEEeCCHHHHH
Confidence 3455667778775 2223333333333434456666655321 0 1112222 2235677765434432
Q ss_pred HHhCcCCCCccccc---cCh-hHHHHHHHhCCceecccccc--chhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 355 EVLAHSAVGGFLTH---CGW-NSTLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 355 ~ll~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
.++..+++ ++.- -|. .+.+||+++|+|+|+....+ |-..+.... .+-|.|..++ ..+.+++.+++.++++
T Consensus 366 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~-~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 366 LIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE-GYNADALLAALRRALA 441 (476)
T ss_pred HHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC-CCCHHHHHHHHHHHHH
Confidence 47788887 5532 223 47899999999999765432 322222111 1235788774 3578999999999886
No 97
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.25 E-value=4.5e-06 Score=67.42 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=78.8
Q ss_pred CceEEEEecccccCCHHHH-----HHHHHHHhhCCC-cEEEEEcCCCCCCCCCCCCCchHHHHH-hcCCce--eeeccCH
Q 011848 283 QSVIYVSFGSIAVMSRDQL-----IEFYYGLVHSKK-SFLWVIRPDLISGKDGENQIPEELLEA-TKERGC--IAGWVPQ 353 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~~~~~-----~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~--~~~~vp~ 353 (476)
...|||+-||.. -++++ ....+.+.+.|. +.++.++.... ..++..... ..+.+. ..+|-|-
T Consensus 3 ~~~vFVTVGtT~--Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 3 LMTVFVTVGTTS--FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------FFGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred ceEEEEEecccc--HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------CCCCHHHhhcccCCeEEEEEecCcc
Confidence 457999999876 22333 345567777776 67888875421 122221110 112222 3477785
Q ss_pred -HHHhCcCCCCccccccChhHHHHHHHhCCceeccccc----cchhhhhHhhhcceeeeEEe
Q 011848 354 -EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF----ADQQINSRFVGEVWKLGLDI 410 (476)
Q Consensus 354 -~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~----~DQ~~na~r~~e~~G~g~~~ 410 (476)
.+..+.+++ +|+|+|.||++|.|..|+|.++++.- ..|-+-|..++ +.|.=..-
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C 132 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYC 132 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEe
Confidence 667777887 99999999999999999999999953 57999999996 45765544
No 98
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.24 E-value=0.0001 Score=73.40 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=61.6
Q ss_pred cCCceeeeccCH-HHHhCcCCCCccc--cc--cChh-HHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccC
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFL--TH--CGWN-STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 415 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I--~H--gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~ 415 (476)
.+++.+.+++++ ..++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. . +..|.|..+. -+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC--CC
Confidence 468888899985 458888998 55 32 4543 6999999999999987543221 1 2236676664 58
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHH
Q 011848 416 RNIVEKAVNDLMVERKEEFMESADR 440 (476)
Q Consensus 416 ~~~l~~ai~~~l~~~~~~~~~~a~~ 440 (476)
.+++.++|.++++| +..+++..+
T Consensus 349 ~~~la~ai~~ll~~--~~~~~~~~~ 371 (397)
T TIGR03087 349 PADFAAAILALLAN--PAEREELGQ 371 (397)
T ss_pred HHHHHHHHHHHHcC--HHHHHHHHH
Confidence 99999999999987 655444333
No 99
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=0.00047 Score=65.70 Aligned_cols=335 Identities=14% Similarity=0.115 Sum_probs=177.2
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCccchh-hHhhcccccccccccCCCeeEEEcC-CCCCCCCC
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAG-IKITFLNTEHYYD-RVIRHSSDAFSRYMQIPGFQFKTLT-DGLPRDHP 80 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG-H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (476)
|.|+||+++ .|++=.+.=+-.|.+++.+.+ .+..++.+...++ .+.... ++...+. +.+.-...
T Consensus 1 m~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~------------le~~~i~~pdy~L~i~ 67 (383)
T COG0381 1 MKMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV------------LELFGIRKPDYDLNIM 67 (383)
T ss_pred CCceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH------------HHHhCCCCCCcchhcc
Confidence 456677665 567778888999999999997 6666665555552 222211 1111111 11111121
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEe--cCCcc-cHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhh
Q 011848 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIIT--DGYMS-RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIID 157 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (476)
...+.+. .....+...+.+++++. +||+|++ |.... ++..+|.+..||+.-+-...-+..
T Consensus 68 ~~~~tl~----~~t~~~i~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~----------- 130 (383)
T COG0381 68 KPGQTLG----EITGNIIEGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGD----------- 130 (383)
T ss_pred ccCCCHH----HHHHHHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCC-----------
Confidence 1222333 33333456678888886 9999884 54443 668899999999987633310000
Q ss_pred cCCCCCCCCcccCccccccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHH-Hh
Q 011848 158 AGELPIKGTEDMDRLITTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQI-RN 236 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~-~~ 236 (476)
-+ +|.-++ ... .. .-+++.+.++-. +.+++ +.
T Consensus 131 -~~---------------------------~PEE~N---------R~l---~~--~~S~~hfapte~-----ar~nLl~E 163 (383)
T COG0381 131 -LY---------------------------FPEEIN---------RRL---TS--HLSDLHFAPTEI-----ARKNLLRE 163 (383)
T ss_pred -CC---------------------------CcHHHH---------HHH---HH--HhhhhhcCChHH-----HHHHHHHc
Confidence 00 010000 000 00 011122222211 11111 22
Q ss_pred cCCC-CeeeeccccCcCccCCCccccCCCCcccccchhhhh-hhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC---
Q 011848 237 HSCP-NIYSIGPLNAHLKVRIPEKTYSSSSLWKIDRSCMAW-LDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS--- 311 (476)
Q Consensus 237 ~~~~-~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--- 311 (476)
+..+ +++.+|-...+.-... -.....+...... +. ..++..+.|++=-..+.. ..+..+..++.+.
T Consensus 164 G~~~~~IfvtGnt~iDal~~~-------~~~~~~~~~~~~~~~~-~~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~ 234 (383)
T COG0381 164 GVPEKRIFVTGNTVIDALLNT-------RDRVLEDSKILAKGLD-DKDKKYILVTAHRRENVG-EPLEEICEALREIAEE 234 (383)
T ss_pred CCCccceEEeCChHHHHHHHH-------HhhhccchhhHHhhhc-cccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHh
Confidence 2333 4667774433211000 0000111112211 22 345678888876555555 4455555544432
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCchHHHHHhc--CCceee---eccCHHHHhCcCCCCccccccChhHHHHHHHhCCceec
Q 011848 312 KKSFLWVIRPDLISGKDGENQIPEELLEATK--ERGCIA---GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMIC 386 (476)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~---~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~ 386 (476)
...+.+++..+... .+.+-..+++. +|+.+. +|.+...++.++.+ ++|-.|. -.-||-..|+|.++
T Consensus 235 ~~~~~viyp~H~~~------~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~ 305 (383)
T COG0381 235 YPDVIVIYPVHPRP------RVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLV 305 (383)
T ss_pred CCCceEEEeCCCCh------hhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEe
Confidence 12334444322110 01110012233 357765 77788889999987 8888774 35789999999999
Q ss_pred cccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 011848 387 WPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMA 442 (476)
Q Consensus 387 ~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~ 442 (476)
+=...+|++ ++ + .|.-+.+. .+.+.|.+++.+++++ ++..++.....
T Consensus 306 lR~~TERPE---~v-~-agt~~lvg--~~~~~i~~~~~~ll~~--~~~~~~m~~~~ 352 (383)
T COG0381 306 LRDTTERPE---GV-E-AGTNILVG--TDEENILDAATELLED--EEFYERMSNAK 352 (383)
T ss_pred eccCCCCcc---ce-e-cCceEEeC--ccHHHHHHHHHHHhhC--hHHHHHHhccc
Confidence 999999997 45 3 46666664 5679999999999997 66666554433
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.17 E-value=3.3e-05 Score=74.92 Aligned_cols=254 Identities=11% Similarity=0.108 Sum_probs=127.9
Q ss_pred CcHHHHHHHHcCCCCceEEE--ecCCcc-cHHHHHHHhCCceEEEecchhhHHHHHhhhhhhhhcCCCCCCCCcccCccc
Q 011848 97 TPPLLKEMVSDSKSPVNCII--TDGYMS-RAIDAAREVGVSIIYFRTISACAFWSFHCIPDIIDAGELPIKGTEDMDRLI 173 (476)
Q Consensus 97 ~~~~~~~ll~~~~~~~D~Ii--~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 173 (476)
....+.++++.. +||+|| .|.+.. ++..+|..++||++-+.... ..
T Consensus 55 ~~~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl-Rs---------------------------- 103 (346)
T PF02350_consen 55 AIIELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL-RS---------------------------- 103 (346)
T ss_dssp HHHHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES----------------------------------
T ss_pred HHHHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC-Cc----------------------------
Confidence 445677888886 999988 455544 78999999999976652220 00
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCCChHHHHHHHHhhhhccCCEEEEcCccccchHHHHHHHh-cC-CCCeeeeccccCc
Q 011848 174 TTVPGMEGFLRCRDLPSFCRVNDPMDPHLLLFARETRLSAHADGLILNTFEDLEGPILSQIRN-HS-CPNIYSIGPLNAH 251 (476)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~-~~-~~~~~~vGp~~~~ 251 (476)
.+.. ....-+..+.... .-+++.++.+-.. .+.+.. +. ..+++.||....+
T Consensus 104 ------------~d~~--------~g~~de~~R~~i~--~la~lhf~~t~~~-----~~~L~~~G~~~~rI~~vG~~~~D 156 (346)
T PF02350_consen 104 ------------GDRT--------EGMPDEINRHAID--KLAHLHFAPTEEA-----RERLLQEGEPPERIFVVGNPGID 156 (346)
T ss_dssp ------------S-TT--------SSTTHHHHHHHHH--HH-SEEEESSHHH-----HHHHHHTT--GGGEEE---HHHH
T ss_pred ------------cccC--------CCCchhhhhhhhh--hhhhhhccCCHHH-----HHHHHhcCCCCCeEEEEChHHHH
Confidence 0000 0000111112222 3356666666432 222222 12 2468999966543
Q ss_pred CccCCCccccCCCCcccccchh--hhhhhcCCCCceEEEEecccccCC-H---HHHHHHHHHHhhC-CCcEEEEEcCCCC
Q 011848 252 LKVRIPEKTYSSSSLWKIDRSC--MAWLDKQPKQSVIYVSFGSIAVMS-R---DQLIEFYYGLVHS-KKSFLWVIRPDLI 324 (476)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~V~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~ 324 (476)
.-.... ....+++ .+++. ...++.|+|++=...... + ..+..++.++.+. +.++||.+...
T Consensus 157 ~l~~~~---------~~~~~~~~~~~i~~-~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~-- 224 (346)
T PF02350_consen 157 ALLQNK---------EEIEEKYKNSGILQ-DAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN-- 224 (346)
T ss_dssp HHHHHH---------HTTCC-HHHHHHHH-CTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S---
T ss_pred HHHHhH---------HHHhhhhhhHHHHh-ccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC--
Confidence 221000 0011111 12322 357889999985555444 3 3455566666665 67788888421
Q ss_pred CCCCCCCCCchHHHHHhc--CCceeeeccC---HHHHhCcCCCCccccccChhHHH-HHHHhCCceeccccccchhhhhH
Q 011848 325 SGKDGENQIPEELLEATK--ERGCIAGWVP---QEEVLAHSAVGGFLTHCGWNSTL-ESIVAGMPMICWPSFADQQINSR 398 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~--~nv~~~~~vp---~~~ll~~~~~~~~I~HgG~gs~~-eal~~GvP~l~~P~~~DQ~~na~ 398 (476)
........+... +|+.+..-++ ...+|.++++ +|+-.| ++. ||.+.|+|.|.+=...+.+.-
T Consensus 225 ------p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~-- 292 (346)
T PF02350_consen 225 ------PRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG-- 292 (346)
T ss_dssp ------HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HHH--
T ss_pred ------chHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH--
Confidence 111122222121 5888886665 4557889997 999999 555 999999999999332333321
Q ss_pred hhhcceeeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHH
Q 011848 399 FVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESAD 439 (476)
Q Consensus 399 r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~ 439 (476)
. + .|..+.+. .+.++|.+++.+++++ ....++.+
T Consensus 293 -r-~-~~~nvlv~--~~~~~I~~ai~~~l~~--~~~~~~~~ 326 (346)
T PF02350_consen 293 -R-E-RGSNVLVG--TDPEAIIQAIEKALSD--KDFYRKLK 326 (346)
T ss_dssp -H-H-TTSEEEET--SSHHHHHHHHHHHHH---HHHHHHHH
T ss_pred -H-h-hcceEEeC--CCHHHHHHHHHHHHhC--hHHHHhhc
Confidence 1 1 24444443 7899999999999985 44444443
No 101
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.15 E-value=0.005 Score=60.71 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCceeeeccC-HHHHhCcCCCCccc--cc--cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHH
Q 011848 343 ERGCIAGWVP-QEEVLAHSAVGGFL--TH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 417 (476)
Q Consensus 343 ~nv~~~~~vp-~~~ll~~~~~~~~I--~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~ 417 (476)
+++.+.++.. -..++..+++ +| ++ |-..++.||+++|+|+|+.... .+...+ +.-..|..++ .-+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~-~~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVP-PGDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeC-CCCHH
Confidence 4555556554 3568899998 55 33 4466999999999999996643 244445 3434566663 35789
Q ss_pred HHHHHHHHHHhH
Q 011848 418 IVEKAVNDLMVE 429 (476)
Q Consensus 418 ~l~~ai~~~l~~ 429 (476)
+++++|.+++++
T Consensus 327 ~la~~i~~l~~~ 338 (374)
T TIGR03088 327 ALARALQPYVSD 338 (374)
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.15 E-value=0.0011 Score=67.72 Aligned_cols=134 Identities=11% Similarity=0.035 Sum_probs=75.5
Q ss_pred CceEEEEecccc-cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHH---HHHhcCCceeeeccCHH---H
Q 011848 283 QSVIYVSFGSIA-VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEEL---LEATKERGCIAGWVPQE---E 355 (476)
Q Consensus 283 ~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~vp~~---~ 355 (476)
...+++..|... ....+.+...+..+.+.+.++++... |.. ...+.+ .++.+.++.+....+.. .
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~-------g~~-~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGT-------GDP-ELEEALRELAERYPGNVRVIIGYDEALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECC-------CCH-HHHHHHHHHHHHCCCcEEEEEcCCHHHHHH
Confidence 345667778775 23333333333334334566666543 210 111222 22345667766555543 4
Q ss_pred HhCcCCCCcccc---ccChh-HHHHHHHhCCceecccccc--chhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 356 VLAHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 356 ll~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
++..+++ +|. +-|.| +.+||+++|+|.|+....+ |...+..-- ..-+.|..++ .-++++|.++|.++++
T Consensus 362 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~-~~~~~G~l~~-~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 362 IYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPE-AESGTGFLFE-EYDPGALLAALSRALR 436 (473)
T ss_pred HHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCC-CCCCceEEeC-CCCHHHHHHHHHHHHH
Confidence 7888887 553 23444 7899999999998865432 322111110 0126777774 4578999999999887
No 103
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.11 E-value=0.00032 Score=68.76 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=80.2
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHh--cCCceeeeccC---H
Q 011848 282 KQSVIYVSFGSIA---VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEAT--KERGCIAGWVP---Q 353 (476)
Q Consensus 282 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~vp---~ 353 (476)
+++.|+|++=... ....+.+..+++++...+.++++....... +. ..+.+.+.+.. .+|+.+.+-++ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---~~-~~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---GS-RIINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---Cc-hHHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 4578778875432 344567888999998877666666532100 00 01111222211 36788876555 4
Q ss_pred HHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEE-eccccCHHHHHHHHHHHHh
Q 011848 354 EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD-IKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 354 ~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~-~~~~~~~~~l~~ai~~~l~ 428 (476)
..++.++++ +|+-++.|- .||.+.|+|.|.+- +.+ ...+ .|..+. + ..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~-~g~nvl~v--g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRL-RADSVIDV--DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhh-hcCeEEEe--CCCHHHHHHHHHHHhC
Confidence 568889997 998876555 99999999999774 211 1112 243333 3 3578999999999655
No 104
>PLN02316 synthase/transferase
Probab=98.06 E-value=0.012 Score=64.24 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=68.0
Q ss_pred cCCceeeeccCHH---HHhCcCCCCccccc---cC-hhHHHHHHHhCCceecccccc--chhhhh----Hhhh--cceee
Q 011848 342 KERGCIAGWVPQE---EVLAHSAVGGFLTH---CG-WNSTLESIVAGMPMICWPSFA--DQQINS----RFVG--EVWKL 406 (476)
Q Consensus 342 ~~nv~~~~~vp~~---~ll~~~~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~--DQ~~na----~r~~--e~~G~ 406 (476)
++++.+....+.. .+++.+|+ |+.- =| ..+.+||+++|+|.|+....+ |..... .+.+ ...+.
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3567666444543 58888997 7642 23 448999999999888765432 332211 1110 01245
Q ss_pred eEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011848 407 GLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVN 464 (476)
Q Consensus 407 g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~ 464 (476)
|..+ ...+++.|..+|.+++.+ |.+..+.+++..++.+...-|-...+.+.++
T Consensus 977 Gflf-~~~d~~aLa~AL~raL~~----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~ 1029 (1036)
T PLN02316 977 GFSF-DGADAAGVDYALNRAISA----WYDGRDWFNSLCKRVMEQDWSWNRPALDYME 1029 (1036)
T ss_pred eEEe-CCCCHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 7666 456889999999999874 3444444555555544444443344444443
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.05 E-value=0.0069 Score=59.75 Aligned_cols=78 Identities=21% Similarity=0.110 Sum_probs=51.7
Q ss_pred cCCceeeeccCHHH---HhCcCCCCccc------cccCh-hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFL------THCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK 411 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I------~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~ 411 (476)
.+||.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|+.+. + ... +..+.+....
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~----~---~~~-~~~~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL----P---EVR-RYEDEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc----H---HHH-hhcCcEEEeC
Confidence 37999999998655 67788872221 23333 358999999999998763 1 122 2223232332
Q ss_pred cccCHHHHHHHHHHHHhH
Q 011848 412 DLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 412 ~~~~~~~l~~ai~~~l~~ 429 (476)
-+.+++.++|.+++.+
T Consensus 325 --~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 --DDPEEFVAAIEKALLE 340 (373)
T ss_pred --CCHHHHHHHHHHHHhc
Confidence 2899999999998763
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.027 Score=59.59 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=62.6
Q ss_pred cCCceeeeccCH-HHHhCcCCCCcccc---ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-cccC
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD 415 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~ 415 (476)
.++|.+.+|.++ ..++..+++ +|. +.| -+++.||+++|+|+|+.... .....+ +.-..|..++ .+.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCCCCC
Confidence 478888899875 458888887 553 445 56899999999999987643 233445 3434687776 5566
Q ss_pred HHHHHHHHHHHHh----HhHHHHHHHHHHHH
Q 011848 416 RNIVEKAVNDLMV----ERKEEFMESADRMA 442 (476)
Q Consensus 416 ~~~l~~ai~~~l~----~~~~~~~~~a~~l~ 442 (476)
.+++.+++.+++. + +.+++++++..
T Consensus 646 ~~~La~aL~~ll~~l~~~--~~l~~~ar~~a 674 (694)
T PRK15179 646 APDVAEALARIHDMCAAD--PGIARKAADWA 674 (694)
T ss_pred hHHHHHHHHHHHhChhcc--HHHHHHHHHHH
Confidence 6677777766554 4 56666655544
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.0013 Score=62.64 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=96.8
Q ss_pred hhhhhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCc-e
Q 011848 273 CMAWLDKQPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHS-----KKSFLWVIRPDLISGKDGENQIPEELLEATKERG-C 346 (476)
Q Consensus 273 l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv-~ 346 (476)
..+-+....+++++.+-.||....-......+.++...+ +.+|++.+..... +...... ...+. .
T Consensus 178 ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~------~~~~~~~---~~~~~~~ 248 (381)
T COG0763 178 AREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY------RRIIEEA---LKWEVAG 248 (381)
T ss_pred HHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH------HHHHHHH---hhccccC
Confidence 333343456789999999998643333344444444433 4577766632110 0111111 11222 1
Q ss_pred eeecc-CH--HHHhCcCCCCccccccChhHHHHHHHhCCceeccccc-cchhhhhHhhhcceee------------eEEe
Q 011848 347 IAGWV-PQ--EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSF-ADQQINSRFVGEVWKL------------GLDI 410 (476)
Q Consensus 347 ~~~~v-p~--~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~-~DQ~~na~r~~e~~G~------------g~~~ 410 (476)
..-++ ++ .+.+..+|+ .+.-+|-. +.|+..+|+|||+.=-. .=-+.-|.++. +... ...+
T Consensus 249 ~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEl 324 (381)
T COG0763 249 LSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPEL 324 (381)
T ss_pred ceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHH
Confidence 22222 22 336777886 66666654 57999999999986211 00111222322 1221 1111
Q ss_pred c-cccCHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 411 K-DLCDRNIVEKAVNDLMVER--KEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 411 ~-~~~~~~~l~~ai~~~l~~~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
- +..+++.|.+++.+++.|. ...+++...++.+.++. +++++.+++.+++.+.
T Consensus 325 iq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 325 IQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELLL 380 (381)
T ss_pred HhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhc
Confidence 1 4789999999999999961 12455555555555554 6677888888877653
No 108
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.96 E-value=0.015 Score=58.23 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=53.6
Q ss_pred cCCceeeeccCHHH---HhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhc---ceeeeEEec
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGE---VWKLGLDIK 411 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e---~~G~g~~~~ 411 (476)
.++|.+.+++|+.+ +|..+++ +|+- +=.-++.||+++|+|+|+.-..+.- .-+.+ .-..|...+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGGPTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc----hheeeccCCCCceEEeC
Confidence 46888999998654 7788886 5531 2234889999999999976533211 11112 234666552
Q ss_pred cccCHHHHHHHHHHHHhH
Q 011848 412 DLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 412 ~~~~~~~l~~ai~~~l~~ 429 (476)
++++++++|.+++++
T Consensus 378 ---d~~~la~ai~~ll~~ 392 (419)
T cd03806 378 ---TAEEYAEAIEKILSL 392 (419)
T ss_pred ---CHHHHHHHHHHHHhC
Confidence 899999999999984
No 109
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.68 E-value=0.00027 Score=69.05 Aligned_cols=136 Identities=14% Similarity=0.081 Sum_probs=87.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHH---HHhCcCCC
Q 011848 286 IYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQE---EVLAHSAV 362 (476)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~---~ll~~~~~ 362 (476)
.++..|+.. .......++++++..+.+++++..+. ..+.+.+...+||.+.+++|+. .++..+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 456677765 22335667777777777776665321 1223333466899999999974 47888887
Q ss_pred CccccccCh-hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHH-HHHHHHHH
Q 011848 363 GGFLTHCGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKE-EFMESADR 440 (476)
Q Consensus 363 ~~~I~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~-~~~~~a~~ 440 (476)
-++-+.-|. .++.||+++|+|+|+....+ ....+ +..+.|..++ .-+.++++++|.+++++ + ..++++++
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~-~~~~~~la~~i~~l~~~--~~~~~~~~~~ 336 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFE-EQTVESLAAAVERFEKN--EDFDPQAIRA 336 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeC-CCCHHHHHHHHHHHHhC--cccCHHHHHH
Confidence 222233343 46789999999999976433 33334 3445777774 34788899999999987 5 34444443
Q ss_pred H
Q 011848 441 M 441 (476)
Q Consensus 441 l 441 (476)
-
T Consensus 337 ~ 337 (351)
T cd03804 337 H 337 (351)
T ss_pred H
Confidence 3
No 110
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.68 E-value=0.0016 Score=65.11 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=60.6
Q ss_pred CCceeeeccCHHH---HhCcCCCCccccccC----hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccC
Q 011848 343 ERGCIAGWVPQEE---VLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 415 (476)
Q Consensus 343 ~nv~~~~~vp~~~---ll~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~ 415 (476)
+++.+.+|+++.+ ++..+++.++|...- -.+++||+++|+|+|+.... .....+ +..+.|..+....+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeCCCCC
Confidence 4677889999764 444433334665442 56899999999999985432 344455 44347877765568
Q ss_pred HHHHHHHHHHHHhHhHHHHHHH
Q 011848 416 RNIVEKAVNDLMVERKEEFMES 437 (476)
Q Consensus 416 ~~~l~~ai~~~l~~~~~~~~~~ 437 (476)
.+++.++|.++++| +..+++
T Consensus 364 ~~~la~~I~~ll~~--~~~~~~ 383 (407)
T cd04946 364 PNELVSSLSKFIDN--EEEYQT 383 (407)
T ss_pred HHHHHHHHHHHHhC--HHHHHH
Confidence 89999999999986 554443
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.67 E-value=0.028 Score=58.22 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=51.6
Q ss_pred CceeeeccCHH-HHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHH
Q 011848 344 RGCIAGWVPQE-EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNI 418 (476)
Q Consensus 344 nv~~~~~vp~~-~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~ 418 (476)
++.+.++.++. +++..+++ ||.= |=..+++||+++|+|+|+.-..+.. . + .. |.+..+. -+.++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V-~~-g~nGll~--~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-F-RS-FPNCLTY--KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-E-ee-cCCeEec--CCHHH
Confidence 35566777754 58988887 6652 3356899999999999998765422 1 3 22 2222222 47899
Q ss_pred HHHHHHHHHhH
Q 011848 419 VEKAVNDLMVE 429 (476)
Q Consensus 419 l~~ai~~~l~~ 429 (476)
+.++|.++|++
T Consensus 671 fAeAI~~LLsd 681 (794)
T PLN02501 671 FVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.66 E-value=0.0028 Score=62.71 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=60.5
Q ss_pred hcCCceeeeccCHHH---HhCcCCCCccccc----cCh-hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecc
Q 011848 341 TKERGCIAGWVPQEE---VLAHSAVGGFLTH----CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 412 (476)
Q Consensus 341 ~~~nv~~~~~vp~~~---ll~~~~~~~~I~H----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~ 412 (476)
...++.+.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+....+ +...+ +.-..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEeC
Confidence 456788889998644 6888998 5532 343 57889999999999876532 33344 34345765544
Q ss_pred ccCHHHHHHHHHHHHhHhHHHH
Q 011848 413 LCDRNIVEKAVNDLMVERKEEF 434 (476)
Q Consensus 413 ~~~~~~l~~ai~~~l~~~~~~~ 434 (476)
..+.++++++|.++++| +..
T Consensus 328 ~~d~~~la~~I~~ll~d--~~~ 347 (380)
T PRK15484 328 PMTSDSIISDINRTLAD--PEL 347 (380)
T ss_pred CCCHHHHHHHHHHHHcC--HHH
Confidence 56899999999999997 654
No 113
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00042 Score=55.15 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=69.9
Q ss_pred EEEEecccccCCHHHHHH--HHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeec--cC-HHHHhCcC
Q 011848 286 IYVSFGSIAVMSRDQLIE--FYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGW--VP-QEEVLAHS 360 (476)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--vp-~~~ll~~~ 360 (476)
+||+-||....-...... +..-.+.-..++|+.++.. +..| . ....+.+| -+ .+.+...+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~--------d~kp------v-agl~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG--------DIKP------V-AGLRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC--------Cccc------c-cccEEEeechHHHHHHHhhcc
Confidence 789999985322222222 2222222345889999642 1222 1 11244444 45 35566666
Q ss_pred CCCccccccChhHHHHHHHhCCceecccccc--------chhhhhHhhhcceeeeEEec
Q 011848 361 AVGGFLTHCGWNSTLESIVAGMPMICWPSFA--------DQQINSRFVGEVWKLGLDIK 411 (476)
Q Consensus 361 ~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~r~~e~~G~g~~~~ 411 (476)
++ +|+|+|.||+..++..++|.+++|-.. .|-.-|..++ +.+.=+...
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~s 122 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACS 122 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEc
Confidence 66 999999999999999999999999654 4788888886 567766664
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.57 E-value=0.003 Score=54.57 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=65.6
Q ss_pred hcCCceeeeccCH---HHHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccc
Q 011848 341 TKERGCIAGWVPQ---EEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDL 413 (476)
Q Consensus 341 ~~~nv~~~~~vp~---~~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~ 413 (476)
..+++.+.+++++ .+++..+++ +|+. |...++.||+++|+|+|+. |...+...+ ...+.|..++..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~~ 143 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDPN 143 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEESTT
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCCC
Confidence 4578889999982 458888887 7766 6777999999999999974 445555556 455668888643
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011848 414 CDRNIVEKAVNDLMVERKEEFMESADR 440 (476)
Q Consensus 414 ~~~~~l~~ai~~~l~~~~~~~~~~a~~ 440 (476)
+.+++.++|.+++++ ++.+++..+
T Consensus 144 -~~~~l~~~i~~~l~~--~~~~~~l~~ 167 (172)
T PF00534_consen 144 -DIEELADAIEKLLND--PELRQKLGK 167 (172)
T ss_dssp -SHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred -CHHHHHHHHHHHHCC--HHHHHHHHH
Confidence 999999999999998 655554444
No 115
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.55 E-value=0.0031 Score=62.90 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=59.8
Q ss_pred cCCceeeeccCHHH---HhCcCCCCcccc--c-------cCh-hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeE
Q 011848 342 KERGCIAGWVPQEE---VLAHSAVGGFLT--H-------CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGL 408 (476)
Q Consensus 342 ~~nv~~~~~vp~~~---ll~~~~~~~~I~--H-------gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~ 408 (476)
.+++.+.+|+|+.+ ++..+++ +|. + -|. .+++||+++|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 46788899999754 6788887 553 2 344 57899999999999875432 22334 3434676
Q ss_pred EeccccCHHHHHHHHHHHHh-HhHHHHH
Q 011848 409 DIKDLCDRNIVEKAVNDLMV-ERKEEFM 435 (476)
Q Consensus 409 ~~~~~~~~~~l~~ai~~~l~-~~~~~~~ 435 (476)
.++ .-+.+++.++|.++++ | ++.+
T Consensus 351 lv~-~~d~~~la~ai~~l~~~d--~~~~ 375 (406)
T PRK15427 351 LVP-ENDAQALAQRLAAFSQLD--TDEL 375 (406)
T ss_pred EeC-CCCHHHHHHHHHHHHhCC--HHHH
Confidence 664 3579999999999998 7 5543
No 116
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.42 E-value=0.00082 Score=65.18 Aligned_cols=111 Identities=17% Similarity=0.330 Sum_probs=78.8
Q ss_pred hcCCceeeeccCHHHHh---CcCCCCccccc-------cCh------hHHHHHHHhCCceeccccccchhhhhHhhhcce
Q 011848 341 TKERGCIAGWVPQEEVL---AHSAVGGFLTH-------CGW------NSTLESIVAGMPMICWPSFADQQINSRFVGEVW 404 (476)
Q Consensus 341 ~~~nv~~~~~vp~~~ll---~~~~~~~~I~H-------gG~------gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~ 404 (476)
..+|+.+.+|+|+.++. .. +.+++... +.+ +-+.+++++|+|+|+.+ +...+..+ ++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V-~~~ 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFI-VEN 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHH-HhC
Confidence 44799999999987654 33 33222211 111 12777899999999854 45566777 578
Q ss_pred eeeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011848 405 KLGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVN 464 (476)
Q Consensus 405 G~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~ 464 (476)
++|..++ +.+++.+++.++..++...|++|++++++++++ |..-..++.+++.
T Consensus 279 ~~G~~v~---~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD---SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC---CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9999996 678899999887665556789999999999998 6655555555544
No 117
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.32 E-value=0.22 Score=49.72 Aligned_cols=115 Identities=10% Similarity=-0.020 Sum_probs=64.9
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCcE-EEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccC-H---HHHhCcC
Q 011848 286 IYVSFGSIAVMSRDQLIEFYYGLVHSKKSF-LWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVP-Q---EEVLAHS 360 (476)
Q Consensus 286 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-~---~~ll~~~ 360 (476)
+++..|............+++|+...+.++ ++.+|.. .. . ...++...++.. + .+++..+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g------~~-~--------~~~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF------SP-F--------TAGNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC------Cc-c--------cccceEEecCcCCHHHHHHHHHhC
Confidence 444455432212223466777777765443 3344321 10 1 124566666653 3 3456667
Q ss_pred CCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHH
Q 011848 361 AVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVN 424 (476)
Q Consensus 361 ~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~ 424 (476)
++ ||.- |--.++.||+++|+|+|+....+ -+ ..+ +. +.|..++ .-+.++|+++++
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~---Eiv-~~-~~G~lv~-~~d~~~La~~~~ 366 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-AR---EVL-QK-SGGKTVS-EEEVLQLAQLSK 366 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-hH---HhE-eC-CcEEEEC-CCCHHHHHhccC
Confidence 86 6653 34568999999999999987664 12 223 33 4677775 347778887554
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.30 E-value=0.0082 Score=59.69 Aligned_cols=144 Identities=18% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHH------hcCCceeeeccCHH
Q 011848 281 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA------TKERGCIAGWVPQE 354 (476)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~nv~~~~~vp~~ 354 (476)
++..+||.||.+....+++.+..-.+.|++.+.-.+|....+. .-...+.+. .++++.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~--------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA--------SGEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST--------THHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH--------HHHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 4578999999999999999999888889888888888875321 111222211 24778888887765
Q ss_pred HH---hCcCCCC-ccccccChhHHHHHHHhCCceecccccc-chhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH
Q 011848 355 EV---LAHSAVG-GFLTHCGWNSTLESIVAGMPMICWPSFA-DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 355 ~l---l~~~~~~-~~I~HgG~gs~~eal~~GvP~l~~P~~~-DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~ 429 (476)
+- +..+|+- --...+|.+|++|||+.|||+|.+|--. =...-|..+ ..+|+...+- .+.++-.+...++-+|
T Consensus 354 ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA--~s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 354 EHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA--DSEEEYVEIAVRLATD 430 (468)
T ss_dssp HHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---SSHHHHHHHHHHHHH-
T ss_pred HHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC--CCHHHHHHHHHHHhCC
Confidence 43 4456650 0246789999999999999999999432 122233344 3567664443 3455555544455555
Q ss_pred hHHHHHHH
Q 011848 430 RKEEFMES 437 (476)
Q Consensus 430 ~~~~~~~~ 437 (476)
+.++++
T Consensus 431 --~~~l~~ 436 (468)
T PF13844_consen 431 --PERLRA 436 (468)
T ss_dssp --HHHHHH
T ss_pred --HHHHHH
Confidence 554443
No 119
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.92 E-value=0.042 Score=56.13 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=62.6
Q ss_pred cCCceeeeccCHHHHhCcCCCCccccc----cChhHHHHHHHhCCceeccccccchhhhhHhhhcce-----e-eeEEec
Q 011848 342 KERGCIAGWVPQEEVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVW-----K-LGLDIK 411 (476)
Q Consensus 342 ~~nv~~~~~vp~~~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~-----G-~g~~~~ 411 (476)
.+||.+.+...-.+++..+++ +|.- |--.++.||+++|+|+|+-.. ......+ +.. | .|..+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVV- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEE-
Confidence 468888886666778988887 5432 445689999999999998533 3333344 331 2 56666
Q ss_pred cccCHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 011848 412 DLCDRNIVEKAVNDLMVERKEEFMESADRMA 442 (476)
Q Consensus 412 ~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~ 442 (476)
...+.+++.++|.++++| +..+++..+-+
T Consensus 425 ~~~d~~~la~ai~~ll~~--~~~~~~~~~~a 453 (475)
T cd03813 425 PPADPEALARAILRLLKD--PELRRAMGEAG 453 (475)
T ss_pred CCCCHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 446899999999999997 65554444333
No 120
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.92 E-value=0.02 Score=58.61 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=63.0
Q ss_pred cCCceeeeccCHHHHhCcCCCCcccc---ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-c--cc
Q 011848 342 KERGCIAGWVPQEEVLAHSAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-D--LC 414 (476)
Q Consensus 342 ~~nv~~~~~vp~~~ll~~~~~~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~--~~ 414 (476)
.++|.+.++.+..+++..+++ +|. .-| ..+++||+++|+|+|+.-... .+...+ +.-.-|..++ . .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCcccc
Confidence 356778888888889999997 664 234 458999999999999865321 122233 3323455554 1 22
Q ss_pred C----HHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHH
Q 011848 415 D----RNIVEKAVNDLMVE-RKEEFMESADRMANLAK 446 (476)
Q Consensus 415 ~----~~~l~~ai~~~l~~-~~~~~~~~a~~l~~~~~ 446 (476)
+ .++|+++|.+++++ ....+.+++++.++.+.
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 3 78899999999963 22334555555544433
No 121
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.89 E-value=0.018 Score=47.72 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=66.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChH
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (476)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++.. .....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-----------~~~i~~~~~~~~--------~k~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-----------IEGIKVIRLPSP--------RKSPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-----------hCCeEEEEecCC--------CCccH
Confidence 577777766655 56789999999999999999554322222 234777766421 11112
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc---cHHHHHHHhC-CceEEEecc
Q 011848 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVG-VSIIYFRTI 141 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~---~~~~~A~~lg-iP~v~~~~~ 141 (476)
..+. . -.+..++++. +||+|.+-.... .+..++...+ +|++.....
T Consensus 59 ~~~~-----~-~~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 59 NYIK-----Y-FRLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred HHHH-----H-HHHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 2221 1 2467778876 999998776543 3555677888 999976443
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.88 E-value=0.0047 Score=50.96 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=49.8
Q ss_pred cCCceeeeccCH-HHHhCcCCCCccccc---cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHH
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFLTH---CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 417 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H---gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~ 417 (476)
.+|+.+.+|++. .+++..+++.+..+. |-.+++.|++++|+|+|+.+.. ..... +..+.|..+ .-+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--ANDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---TT-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--CCCHH
Confidence 579999999974 458889998444332 2358999999999999997761 22223 345777666 35999
Q ss_pred HHHHHHHHHHhH
Q 011848 418 IVEKAVNDLMVE 429 (476)
Q Consensus 418 ~l~~ai~~~l~~ 429 (476)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 123
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.79 E-value=0.32 Score=45.16 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=73.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc-hhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCCh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (476)
||.|--.-+ -|+.-+-.|-++|.++||+|.+.+-+.. ...+.+.. ++.+..+... ....+
T Consensus 2 kVwiDI~n~-~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y-----------gf~~~~Igk~-------g~~tl 62 (346)
T COG1817 2 KVWIDIGNP-PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY-----------GFPYKSIGKH-------GGVTL 62 (346)
T ss_pred eEEEEcCCc-chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh-----------CCCeEeeccc-------CCccH
Confidence 555544333 3899999999999999999999886432 12333333 3555555421 11122
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecch
Q 011848 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~ 142 (476)
...+..... ....+.+++.+. +||+.+. -.++.+..+|-.+|+|.+.+.-..
T Consensus 63 ~~Kl~~~~e-R~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 63 KEKLLESAE-RVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHHH-HHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 322222222 224467777776 9999999 678899999999999999987664
No 124
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.65 E-value=0.53 Score=45.89 Aligned_cols=102 Identities=9% Similarity=-0.001 Sum_probs=65.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhHhhcccccccccccCCCeeE-EEcCCCCCCCCCCCC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQF-KTLTDGLPRDHPRTP 83 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (476)
|||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+-++ . .|.++- +.++.. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~-~----------~P~vd~vi~~~~~--~------ 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS-R----------MPEVNEAIPMPLG--H------ 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh-c----------CCccCEEEecccc--c------
Confidence 589999999999999999999999996 99999999876544443 3 444532 323210 0
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEE
Q 011848 84 DKFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~ 137 (476)
.... +. ...++++.+ ..++|++|.=........++...|+|.-.
T Consensus 62 -~~~~-~~--------~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 -GALE-IG--------ERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -chhh-hH--------HHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0000 11 112222223 24999999654555566677777777654
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.62 E-value=0.16 Score=48.92 Aligned_cols=131 Identities=14% Similarity=0.048 Sum_probs=76.7
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeec--cCH-HH
Q 011848 282 KQSVIYVSFGSIA---VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGW--VPQ-EE 355 (476)
Q Consensus 282 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--vp~-~~ 355 (476)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.+ .+....+...+..+ +..+.+- +++ .+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~------~e~~~~~~i~~~~~-~~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND------AEKQRAERIAEALP-GAVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHhhCC-CCeecCCCCHHHHHH
Confidence 4666767777543 5667788888888876677777664421 01011222222222 2233333 334 55
Q ss_pred HhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceee---eEEe-c-cccCHHHHHHHHHHHH
Q 011848 356 VLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKL---GLDI-K-DLCDRNIVEKAVNDLM 427 (476)
Q Consensus 356 ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~---g~~~-~-~~~~~~~l~~ai~~~l 427 (476)
++++|++ +|+. -.|.++=|.+.|+|+|++= ... +..+.. =+|- -+.- . ..++++++.++++++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~lf-g~t---~p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTLY-GAT---DPGRTG-GYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEEE-CCC---CHhhcc-cCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 8889996 7775 7889999999999998761 111 111110 0111 1111 1 5899999999998874
No 126
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.46 E-value=0.72 Score=45.03 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=68.9
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhHhhcccccccccccCCCe-eEEEcCCCCCC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGF-QFKTLTDGLPR 77 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (476)
|+++ ++||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+-+. . .|.+ +++.++..
T Consensus 1 ~~~~-~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~-~----------~P~id~vi~~~~~--- 65 (352)
T PRK10422 1 MDKP-FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS-E----------NPEINALYGIKNK--- 65 (352)
T ss_pred CCCC-CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc-c----------CCCceEEEEeccc---
Confidence 5554 5699999999999999999999999998 89999999987555443 3 3445 33333310
Q ss_pred CCCCCCCChHHHHHHHHhhCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEE
Q 011848 78 DHPRTPDKFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (476)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~ 137 (476)
.......+. .+..+++++ ..++|++|.-........++...|.|..+
T Consensus 66 -----~~~~~~~~~--------~~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 -----KAGASEKIK--------NFFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -----cccHHHHHH--------HHHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 001111111 112222333 24999999654444456667777777655
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.38 E-value=0.0052 Score=47.22 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=41.8
Q ss_pred hhhhhhcCCCCceEEEEecccccC---CH--HHHHHHHHHHhhCCCcEEEEEcCC
Q 011848 273 CMAWLDKQPKQSVIYVSFGSIAVM---SR--DQLIEFYYGLVHSKKSFLWVIRPD 322 (476)
Q Consensus 273 l~~~l~~~~~~~~V~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 322 (476)
+..|+....++|.|+||+||.... .. ..+..++++++.++..+|..++..
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 456898888999999999998743 22 468899999999999999999754
No 128
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.24 E-value=0.045 Score=53.81 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=57.7
Q ss_pred cCCceeeeccCH-HHHhCcCCCCccccc--cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHH
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFLTH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNI 418 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~ 418 (476)
++++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..+ +.-+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv-~~~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLV-PKGDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEe-CCCcHHH
Confidence 457777787765 458888998444444 34568999999999999864321 123334 343566666 3458999
Q ss_pred HHHHHHHHHhH
Q 011848 419 VEKAVNDLMVE 429 (476)
Q Consensus 419 l~~ai~~~l~~ 429 (476)
++++|.+++++
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 99999999986
No 129
>PRK14098 glycogen synthase; Provisional
Probab=96.22 E-value=0.096 Score=53.59 Aligned_cols=132 Identities=8% Similarity=0.019 Sum_probs=76.4
Q ss_pred CceEEEEecccc-cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHH---HHHhcCCceeeeccCHH---H
Q 011848 283 QSVIYVSFGSIA-VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEEL---LEATKERGCIAGWVPQE---E 355 (476)
Q Consensus 283 ~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~vp~~---~ 355 (476)
+..+++..|... ....+.+...+..+.+.+.++++... |.. ...+.+ .++.++++.+..+++.. .
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~-------G~~-~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGS-------GDK-EYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeC-------CCH-HHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 344666777765 22333433333334334566666543 211 111222 23346788888888863 5
Q ss_pred HhCcCCCCcccccc---Ch-hHHHHHHHhCCceecccccc--chhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 356 VLAHSAVGGFLTHC---GW-NSTLESIVAGMPMICWPSFA--DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 356 ll~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~--DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
+++.+|+ ++.-. |. .+.+||+++|+|.|+....+ |...+ .. +.-+.|..+ ...++++|.++|.++++
T Consensus 378 ~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~-~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 378 AIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIF-HDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEe-CCCCHHHHHHHHHHHHH
Confidence 8888997 66432 32 37789999999888765432 32211 11 123567776 34578999999998764
No 130
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.19 E-value=0.14 Score=51.04 Aligned_cols=180 Identities=12% Similarity=0.156 Sum_probs=104.1
Q ss_pred hhhhhcCCCCceEEEEecccccC------C-H---HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCC-CCchHHHHHhc
Q 011848 274 MAWLDKQPKQSVIYVSFGSIAVM------S-R---DQLIEFYYGLVHSKKSFLWVIRPDLISGKDGEN-QIPEELLEATK 342 (476)
Q Consensus 274 ~~~l~~~~~~~~V~vs~Gs~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (476)
..|+.....+++|-|+....... . . ..+..+++.+.+.++++++..-.......+..+ .....+.+..+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 34554334567788876643311 1 1 223345555555688877664211000000000 01122223332
Q ss_pred --CCceee--eccCHH--HHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEE-ec-ccc
Q 011848 343 --ERGCIA--GWVPQE--EVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD-IK-DLC 414 (476)
Q Consensus 343 --~nv~~~--~~vp~~--~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~-~~-~~~ 414 (476)
+++.+. ++-|.+ .++.+|++ +|.. =.-++.-|+..|||.+.+++ | +.....+ +.+|.... ++ +++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhhC
Confidence 233332 333433 68888886 6654 34467778999999999998 3 3344445 46777755 55 789
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
+.++|.+.+.++++| .+.++++.++-.+++++. + .+.+.++|+.+-
T Consensus 378 ~~~~Li~~v~~~~~~-r~~~~~~l~~~v~~~r~~----~--~~~~~~~~~~~~ 423 (426)
T PRK10017 378 LDGSLQAMVADTLGQ-LPALNARLAEAVSRERQT----G--MQMVQSVLERIG 423 (426)
T ss_pred CHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHhc
Confidence 999999999999983 267888877777777764 3 456677776553
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.03 E-value=0.05 Score=52.28 Aligned_cols=85 Identities=14% Similarity=0.013 Sum_probs=56.0
Q ss_pred hcCCceee---eccCHH---HHhCcCCCCccccc---cC-hhHHHHHHHhCCceecccc------ccch------hhhhH
Q 011848 341 TKERGCIA---GWVPQE---EVLAHSAVGGFLTH---CG-WNSTLESIVAGMPMICWPS------FADQ------QINSR 398 (476)
Q Consensus 341 ~~~nv~~~---~~vp~~---~ll~~~~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~------~~DQ------~~na~ 398 (476)
.++++.+. +++++. +++..+++ ||.- =| ..++.||+++|+|+|+--. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45788877 455643 57888887 6653 24 4578999999999988632 2332 22333
Q ss_pred hhhc-ceeeeEEeccccCHHHHHHHHHHHHh
Q 011848 399 FVGE-VWKLGLDIKDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 399 r~~e-~~G~g~~~~~~~~~~~l~~ai~~~l~ 428 (476)
...+ +.|.|..+ ...++++++++|.+++.
T Consensus 277 ~~~~~~~g~g~~~-~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEHGQKWKI-HKFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCcccCceeee-cCCCHHHHHHHHHHHHh
Confidence 3221 23566555 46899999999999855
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.92 E-value=0.67 Score=45.06 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=66.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhHhhcccccccccccCCCe-eEEEcCCCCCCCCCCCCC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGF-QFKTLTDGLPRDHPRTPD 84 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (476)
||+++-..+.|++.-...+.++|+++ +.+|++++.+.+.+-+.. .|.+ +++.++.... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~-----------~p~vd~vi~~~~~~~------~~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE-----------NPDINALYGLDRKKA------KA 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc-----------CCCccEEEEeChhhh------cc
Confidence 68999999999999999999999997 899999999875544433 3445 3444431100 00
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 011848 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~ 137 (476)
. ...+.... ..++. ++. .++|++|.=........++...|.|.-+
T Consensus 64 ~-~~~~~~~~----~l~~~-lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 64 G-ERKLANQF----HLIKV-LRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred h-HHHHHHHH----HHHHH-HHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 00011111 11222 233 4999999655555677888888888765
No 133
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.91 E-value=0.7 Score=44.76 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=67.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhHhhcccccccccccCCCeeEEEc-CCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTL-TDGLPRDHPRT 82 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (476)
||||+++-..+.|++.=.+.+-..|+++ +.+++|++.+.+.+ +.+. .|.++-+.. .. ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~-i~~~----------~p~I~~vi~~~~---~~---- 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAP-ILKL----------NPEIDKVIIIDK---KK---- 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHH-HHhc----------ChHhhhhccccc---cc----
Confidence 5799999999999999999999999999 59999999977443 3333 233422211 10 00
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
.. ........+.+.+ ..++|+||.=.-.+-...++...++|.-.-
T Consensus 63 -~~----------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 63 -KG----------LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -cc----------cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 00 0111223333333 248999997777776777777778877663
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.75 E-value=0.018 Score=48.50 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 011848 22 SMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (476)
Q Consensus 22 p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (476)
-+..|+++|.++||+|+++++.......... ..++.+..++-..... ....... ...+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-------~~~~~~~-----~~~~ 63 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE----------EDGVRVHRLPLPRRPW-------PLRLLRF-----LRRL 63 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE----------ETTEEEEEE--S-SSS-------GGGHCCH-----HHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc----------cCCceEEeccCCccch-------hhhhHHH-----HHHH
Confidence 4678999999999999999975533322111 2346666665211110 0001011 1233
Q ss_pred HHHH--HcCCCCceEEEecCCcc-cHHHHHH-HhCCceEEEec
Q 011848 102 KEMV--SDSKSPVNCIITDGYMS-RAIDAAR-EVGVSIIYFRT 140 (476)
Q Consensus 102 ~~ll--~~~~~~~D~Ii~D~~~~-~~~~~A~-~lgiP~v~~~~ 140 (476)
.+++ +. .+||+|.+..... ....++. ..++|+|....
T Consensus 64 ~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 64 RRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 4444 33 5999999776432 3334444 78999998754
No 135
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.12 Score=51.83 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=90.6
Q ss_pred CCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHH---H---hcCCceeeeccC-
Q 011848 280 QPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLE---A---TKERGCIAGWVP- 352 (476)
Q Consensus 280 ~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~---~~~nv~~~~~vp- 352 (476)
-++..+||+||+......++.+..-++-++..+.-++|..+.. ++..+...+++ + ..+++++.+-.|
T Consensus 426 lp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~------~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 426 LPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG------DDAEINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC------CcHHHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 3568899999999999999999888888888898999988642 22223333322 1 136677766665
Q ss_pred --HHHHhCcCCCCccc---cccChhHHHHHHHhCCceeccccccchhh--hhHhhhcceeeeEEeccccCHHHHHHHH
Q 011848 353 --QEEVLAHSAVGGFL---THCGWNSTLESIVAGMPMICWPSFADQQI--NSRFVGEVWKLGLDIKDLCDRNIVEKAV 423 (476)
Q Consensus 353 --~~~ll~~~~~~~~I---~HgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~r~~e~~G~g~~~~~~~~~~~l~~ai 423 (476)
|.+-+..+|+ |. --||..|..|+|..|||+|.. .++|+- |+.-++..+|+-..+- .-.++=+..++
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~--~G~~FasR~~~si~~~agi~e~vA-~s~~dYV~~av 572 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTR--VGEQFASRNGASIATNAGIPELVA-DSRADYVEKAV 572 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeee--ccHHHHHhhhHHHHHhcCCchhhc-CCHHHHHHHHH
Confidence 4556666776 65 579999999999999999998 467764 4445544556554442 22333444444
No 136
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.59 E-value=0.15 Score=38.82 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=54.0
Q ss_pred ccChhHHHHHHHhCCceeccccccchhhhhHhhhccee-eeEEeccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 011848 368 HCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWK-LGLDIKDLCDRNIVEKAVNDLMVERKEEFMESADRMANLAK 446 (476)
Q Consensus 368 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G-~g~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~ 446 (476)
+|-..-+.|++++|+|+|.-.. ......+ +. | -++..+ +.+++.++|..+++| +..+++..+-+.+.-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~~---~~~el~~~i~~ll~~--~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITYN---DPEELAEKIEYLLEN--PEERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEEC---CHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH
Confidence 5566689999999999998865 3333334 22 4 344442 999999999999997 655544443333333
Q ss_pred HHHhcCCChHHHHHHHHH
Q 011848 447 KSVNKGGSSYCNLDRLVN 464 (476)
Q Consensus 447 ~~~~~~g~~~~~~~~~i~ 464 (476)
.. ..+....++.+++
T Consensus 78 ~~---~~t~~~~~~~il~ 92 (92)
T PF13524_consen 78 LK---RHTWEHRAEQILE 92 (92)
T ss_pred HH---hCCHHHHHHHHHC
Confidence 32 5666666666653
No 137
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.25 E-value=1.2 Score=45.55 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=49.2
Q ss_pred cCCceeeeccCH-HHHhCcCCCCcccc---ccC-hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 342 KERGCIAGWVPQ-EEVLAHSAVGGFLT---HCG-WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 342 ~~nv~~~~~vp~-~~ll~~~~~~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
.++|.+.+|..+ ..+|..+++ ||. +-| .+++.||+++|+|+|+.... .+...+ +.-..|..++ .-+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp-~~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILD-DAQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEEC-CCCh
Confidence 478888888654 457888997 774 344 56999999999999977542 344445 3445677775 2244
Q ss_pred HHHHHHH
Q 011848 417 NIVEKAV 423 (476)
Q Consensus 417 ~~l~~ai 423 (476)
+.+.+++
T Consensus 526 ~aLa~ai 532 (578)
T PRK15490 526 VNLDQAC 532 (578)
T ss_pred hhHHHHH
Confidence 4454444
No 138
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.08 E-value=3.5 Score=39.85 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=60.9
Q ss_pred CCceEEEEeccc--c--cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCce-eeec--cCH-
Q 011848 282 KQSVIYVSFGSI--A--VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGC-IAGW--VPQ- 353 (476)
Q Consensus 282 ~~~~V~vs~Gs~--~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~--vp~- 353 (476)
+++.|.+..|+. . ..+.+.+.++++.+...+.++++..+.+ +....+.+.+..++++. +.+- +.+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~-------e~~~~~~i~~~~~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAK-------DHPAGNEIEALLPGELRNLAGETSLDEA 245 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChh-------hHHHHHHHHHhCCcccccCCCCCCHHHH
Confidence 577888888774 2 5677788888888876677766554321 11112222222233322 2332 333
Q ss_pred HHHhCcCCCCccccccChhHHHHHHHhCCceecc
Q 011848 354 EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 387 (476)
Q Consensus 354 ~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 387 (476)
..+++++++ +|+. -.|-++=|.+.|+|+|++
T Consensus 246 ~ali~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 246 VDLIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 458889996 8876 788899999999999875
No 139
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.63 E-value=0.16 Score=44.80 Aligned_cols=119 Identities=12% Similarity=0.064 Sum_probs=61.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCC--CCCC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP--RTPD 84 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 84 (476)
||||+.-=-+. +---+.+|+++|.+.||+|+++.|...+.-...... . ...++.....++...... ....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~---~~pl~~~~~~~~~~~~~~~~~~v~ 72 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT----L---HKPLRVTEVEPGHDPGGVEAYAVS 72 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------S---SSEEEEEEEE-TTCCSTTEEEEES
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----C---CCCeEEEEEEecccCCCCCEEEEc
Confidence 57777766666 556688999999888999999999776443322211 0 111444332111111100 0011
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC----------cc---cHHHHHHHhCCceEEEecc
Q 011848 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~----------~~---~~~~~A~~lgiP~v~~~~~ 141 (476)
....-+-. -.+..++.+ .+||+||+... +. ++..-|...|||.|.++..
T Consensus 73 GTPaDcv~------~al~~~~~~--~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 73 GTPADCVK------LALDGLLPD--KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp S-HHHHHH------HHHHCTSTT--SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred CcHHHHHH------HHHHhhhcc--CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 11111111 112333333 36999997532 22 4566677889999998765
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.36 E-value=2.2 Score=40.69 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=41.3
Q ss_pred CHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhh----hhHhhhcceeeeEEec
Q 011848 352 PQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQI----NSRFVGEVWKLGLDIK 411 (476)
Q Consensus 352 p~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~----na~r~~e~~G~g~~~~ 411 (476)
|+..+|..++. .+||=--.+=+.||+..|+|+.+++.-. +.. -...+. +.|+-..++
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~-~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLE-ERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHH-HCCCEEECC
Confidence 67788998886 6777777788899999999999999875 222 223342 457766665
No 141
>PHA01630 putative group 1 glycosyl transferase
Probab=94.12 E-value=1.4 Score=42.55 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=59.3
Q ss_pred eccCHHH---HhCcCCCCccc--cc-cC-hhHHHHHHHhCCceecccccc--chhh---hhHhhhcc-----------ee
Q 011848 349 GWVPQEE---VLAHSAVGGFL--TH-CG-WNSTLESIVAGMPMICWPSFA--DQQI---NSRFVGEV-----------WK 405 (476)
Q Consensus 349 ~~vp~~~---ll~~~~~~~~I--~H-gG-~gs~~eal~~GvP~l~~P~~~--DQ~~---na~r~~e~-----------~G 405 (476)
.++|+.+ ++..+++ +| ++ .| ..++.||+++|+|+|+.-..+ |... |+-.+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3477544 6888887 54 22 22 558999999999999976543 3322 22222 10 12
Q ss_pred eeEEeccccCHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011848 406 LGLDIKDLCDRNIVEKAVNDLMVER-KEEFMESADRMANLAKKSVNKGGSSYCNLDRLVND 465 (476)
Q Consensus 406 ~g~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~ 465 (476)
+|..++ .+.+++.+++.+++.+. -+..+++.+.-++..++ .-+-...++++.+-
T Consensus 273 ~G~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l 327 (331)
T PHA01630 273 VGYFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKI 327 (331)
T ss_pred cccccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 454443 36777888888887741 12455544444444443 34433444444443
No 142
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.96 E-value=0.39 Score=48.64 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=79.8
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHH---HH---hcCCceeeeccCHHH
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELL---EA---TKERGCIAGWVPQEE 355 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~---~~~nv~~~~~vp~~~ 355 (476)
+..+||++|--....++..+..-+..+++.+..++|....+-.. . ..|. +. .|+++++.+-+...+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g---e-----~rf~ty~~~~Gl~p~riifs~va~k~e 828 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG---E-----QRFRTYAEQLGLEPDRIIFSPVAAKEE 828 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc---h-----HHHHHHHHHhCCCccceeeccccchHH
Confidence 46689999988888999999999999999999999998654211 1 1221 11 256777766555333
Q ss_pred HhCc-----CCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEecc
Q 011848 356 VLAH-----SAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKD 412 (476)
Q Consensus 356 ll~~-----~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~ 412 (476)
=..+ ..+.-+.+ .|..|.++.|+.|||||.+|.-.--...|.-+--.+|+|..+-+
T Consensus 829 Hvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 829 HVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred HHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 2221 22222333 47889999999999999999754333333332236899875543
No 143
>PLN02939 transferase, transferring glycosyl groups
Probab=92.67 E-value=4.3 Score=44.40 Aligned_cols=84 Identities=11% Similarity=0.028 Sum_probs=54.5
Q ss_pred cCCceeeeccCHH---HHhCcCCCCccccc----cChhHHHHHHHhCCceecccccc--chhhh--hHhhhcceeeeEEe
Q 011848 342 KERGCIAGWVPQE---EVLAHSAVGGFLTH----CGWNSTLESIVAGMPMICWPSFA--DQQIN--SRFVGEVWKLGLDI 410 (476)
Q Consensus 342 ~~nv~~~~~vp~~---~ll~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~--DQ~~n--a~r~~e~~G~g~~~ 410 (476)
.++|.+..+.+.. .+++.+++ ||.- +-..+.+||+++|+|.|+....+ |-..+ ...+.+.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888888764 58899997 7743 22448999999999998875543 32211 11111122456666
Q ss_pred ccccCHHHHHHHHHHHHh
Q 011848 411 KDLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~~l~ 428 (476)
+ ..+++.|.++|.++++
T Consensus 914 ~-~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 L-TPDEQGLNSALERAFN 930 (977)
T ss_pred c-CCCHHHHHHHHHHHHH
Confidence 3 3588899999988875
No 144
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.99 E-value=1.1 Score=37.76 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCC----CCCCC-
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGL----PRDHP- 80 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~- 80 (476)
+|||++.-.|+.|-..-.+.|++.|.++|+.|-=+-++.-+ ..|. .-+++.+.+..+- .....
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR-----~gGk-------R~GF~Ivdl~tg~~~~la~~~~~ 72 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR-----EGGK-------RIGFKIVDLATGEEGILARVGFS 72 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee-----cCCe-------EeeeEEEEccCCceEEEEEcCCC
Confidence 67999999999999999999999999999998755554422 2221 1247777776321 11111
Q ss_pred -CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc
Q 011848 81 -RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (476)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~ 122 (476)
...+.+.-..+.+.+...+.++..++ ..|+||.|-.-.
T Consensus 73 ~~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEIGp 111 (179)
T COG1618 73 RPRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEIGP 111 (179)
T ss_pred CcccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEecccc
Confidence 01122222344555555566666555 479999997643
No 145
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.65 E-value=1 Score=38.36 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=50.8
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 011848 16 AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNC 95 (476)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (476)
..|=-.-+..|+++|+++||+|+++++... +....... ....... .. ........+..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~-~~~~~~~~-----------~~~~~~~--~~-----~~~~~~~~~~~--- 68 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK-DPIEEELV-----------KIFVKIP--YP-----IRKRFLRSFFF--- 68 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T-TS-SSTEE-----------EE---TT---S-----STSS--HHHHH---
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC-ccchhhcc-----------ceeeeee--cc-----cccccchhHHH---
Confidence 446667789999999999999999987542 11111100 0111000 00 01111111111
Q ss_pred hCcHHHHHHHHcCCCCceEEEecCCcc-cHHHHHHHhCCceEEEecch
Q 011848 96 ATPPLLKEMVSDSKSPVNCIITDGYMS-RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 96 ~~~~~~~~ll~~~~~~~D~Ii~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (476)
...+..++++. ++|+|-+..... +...++-. ++|.+.+....
T Consensus 69 --~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 69 --MRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp --HHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred --HHHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 23467777775 999995444333 33333434 99999987653
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.52 E-value=0.95 Score=38.94 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=60.9
Q ss_pred EcCCCccCHHHHHHHHHHH-HhC-CCEEEEEeCccchhh--H---hhcccccccccccCCCeeEEEcCCCCCCCCCCCCC
Q 011848 12 LPLPAVGHVNSMLNLAELL-GHA-GIKITFLNTEHYYDR--V---IRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (476)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L-~~r-GH~Vt~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (476)
+..++.||+.=++.|.+.+ .++ .++..+++..+.... + ++... ....+..++....... .
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~---------~~~~~~~~~r~r~v~q----~ 69 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS---------KRHKILEIPRAREVGQ----S 69 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc---------ccceeeccceEEEech----h
Confidence 4457889999999999999 333 566667775543221 1 11110 0012333331111111 0
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc--cHHHHHHHh------CCceEEEec
Q 011848 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREV------GVSIIYFRT 140 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~--~~~~~A~~l------giP~v~~~~ 140 (476)
.....+..+ ......+.-+.+. +||+||+..-.. ....+|..+ |.+.|.+-+
T Consensus 70 ~~~~~~~~l-~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 70 YLTSIFTTL-RAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hHhhHHHHH-HHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 111122222 2223334444444 999999887544 677888888 899988733
No 147
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=89.95 E-value=2.2 Score=37.88 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=35.9
Q ss_pred cCCceeeeccCH----HHHhCcCCCCccccccC----hhHHHHHHHhCCceecccccc
Q 011848 342 KERGCIAGWVPQ----EEVLAHSAVGGFLTHCG----WNSTLESIVAGMPMICWPSFA 391 (476)
Q Consensus 342 ~~nv~~~~~vp~----~~ll~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~ 391 (476)
.+|+.+.++++. ..++..+++ +|+-.. .+++.||+++|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 468888888632 224444776 777766 789999999999999987654
No 148
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=89.89 E-value=2.8 Score=37.16 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=36.6
Q ss_pred ccEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 011848 6 HVHVAILPLP--AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (476)
Q Consensus 6 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (476)
|.+|.++|+| +-|-..-.-+|+-+|+++|+.|.++-..-....+
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNL 46 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNL 46 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhh
Confidence 5688888885 7899999999999999999999999865444433
No 149
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.28 E-value=5.3 Score=36.78 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
+||||+.-=-+. |---+.+|+++|.+.| +|+++.|...+........ . ..-+++..+...-......-.+.
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait----~---~~pl~~~~~~~~~~~~~y~v~GT 75 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMT----L---GVPLRIKEYQKNNRFFGYTVSGT 75 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCccccc----C---CCCeEEEEEccCCCceEEEEcCc
Confidence 468887765554 4456788999999888 7999998765433222111 1 11244444421000000001111
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC----------c---ccHHHHHHHhCCceEEEecc
Q 011848 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------M---SRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~----------~---~~~~~~A~~lgiP~v~~~~~ 141 (476)
+. -+-. -.+..++. .+||+||+... + .++..-|..+|||.|.++..
T Consensus 76 Pa-DCV~------lal~~~~~---~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 76 PV-DCIK------VALSHILP---EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HH-HHHH------HHHHhhcC---CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 11 1111 11233333 38999997543 2 25666677889999998763
No 150
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.26 E-value=0.65 Score=37.17 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=28.5
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 7 VHVAILPLPAVG---HVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 7 ~~il~~~~~~~G---H~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
|||+|+.-|-.+ .-...++|+.+..+|||+|.+++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 588898887664 345789999999999999999998654
No 151
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.26 E-value=4.4 Score=36.94 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=62.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCCh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (476)
|||++.-=-+. |---+.+|+++|+ .+++|+++.|..++.-...... - ..-++...+.. ......+.+
T Consensus 1 mrILlTNDDGi-~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slT-l------~~Plr~~~~~~----~~~av~GTP 67 (252)
T COG0496 1 MRILLTNDDGI-HAPGIRALARALR-EGADVTVVAPDREQSGASHSLT-L------HEPLRVRQVDN----GAYAVNGTP 67 (252)
T ss_pred CeEEEecCCcc-CCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccc-c------ccCceeeEecc----ceEEecCCh
Confidence 46665544443 5556778889998 9999999999875543332211 0 00133332221 000001111
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCc-------------ccHHHHHHHhCCceEEEecc
Q 011848 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYM-------------SRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~-------------~~~~~~A~~lgiP~v~~~~~ 141 (476)
. -+- .-.+..++++. +||+||+.... .+|++=|..+|||.|.++..
T Consensus 68 a-DCV------~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 68 A-DCV------ILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred H-HHH------HHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1 111 11245566553 69999975432 24556678889999998665
No 152
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.08 E-value=2.7 Score=42.55 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=66.2
Q ss_pred eccCHHH---HhCcCCCCcccc---ccChh-HHHHHHHhCCc----eeccccccchhhhhHhhhcceeeeEEeccccCHH
Q 011848 349 GWVPQEE---VLAHSAVGGFLT---HCGWN-STLESIVAGMP----MICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN 417 (476)
Q Consensus 349 ~~vp~~~---ll~~~~~~~~I~---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~ 417 (476)
+.+++.+ ++..+++ ++. +=|+| ++.||+++|+| +|+--+.+ .+..+ +-|+.+ ...+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllV-nP~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLV-NPYDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEE-CCCCHH
Confidence 4566654 5778887 554 44644 78899999999 55443332 11122 235555 346899
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 418 IVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 418 ~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
+++++|.++|+...++-+++.+++.+.+.. -+...-+++++++|.
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 999999999983224566666666666554 445666788887764
No 153
>PRK14099 glycogen synthase; Provisional
Probab=88.86 E-value=10 Score=38.87 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=30.1
Q ss_pred CCccEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 4 QDHVHVAILPLP------AVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 4 ~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|+.|||+|++.- +.|=-.-.-.|.++|+++||+|.++.|.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 356799998763 2233445677889999999999999983
No 154
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.86 E-value=1.1 Score=37.08 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=41.6
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|++.||++.+.++-+|-.-..-++..|.++|++|++++..-..+.+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999999975555555444
No 155
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.18 E-value=21 Score=32.76 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=29.1
Q ss_pred eccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecc
Q 011848 349 GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 387 (476)
Q Consensus 349 ~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 387 (476)
++=|+-++|+.++- .++|---.|-..||.+.|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 34588899988886 455556677789999999999654
No 156
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=87.06 E-value=6.9 Score=33.60 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=28.7
Q ss_pred HHHHHHcCCCCceEEEecCCcccHHHHHHHh-CCceEEEecc
Q 011848 101 LKEMVSDSKSPVNCIITDGYMSRAIDAAREV-GVSIIYFRTI 141 (476)
Q Consensus 101 ~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~l-giP~v~~~~~ 141 (476)
+.++-++ +..||+|+...--..+.-+-+.+ +.|.+.+.-.
T Consensus 57 ~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 57 ARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred HHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 3343333 56899999987666777788888 8999987444
No 157
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.59 E-value=10 Score=34.75 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=59.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCC--CCCCCCCCCCC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD--GLPRDHPRTPD 84 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 84 (476)
||||+.-=-+. |---+.+|+++|.+.| +|+++.|...+.-...... . ...+++..++. +. ......+
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait----~---~~pl~~~~~~~~~~~--~~~~v~G 69 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLT----L---FEPLRVGQVKVKNGA--HIYAVDG 69 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcC----C---CCCeEEEEeccCCCc--cEEEEcC
Confidence 36665443332 4445778899999988 8999998775443322211 0 11244444431 11 0000111
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCc-------------ccHHHHHHHhCCceEEEecc
Q 011848 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYM-------------SRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~-------------~~~~~~A~~lgiP~v~~~~~ 141 (476)
.+- -+-.+ .+..++. .+||+||+.... .++..-|...|||.+.++..
T Consensus 70 TPa-Dcv~~------gl~~l~~---~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 70 TPT-DCVIL------GINELMP---EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred cHH-HHHHH------HHHHhcc---CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 111 11111 1233333 389999876432 15666677889999998653
No 158
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=86.54 E-value=9.5 Score=35.03 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
||||+.-=-+. |---..+|+++|++ +|+|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46666655444 44457788888865 68999999877544
No 159
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=86.21 E-value=12 Score=34.45 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=58.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC-CCCCCCCCCCCCC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT-DGLPRDHPRTPDK 85 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 85 (476)
||||+.-=-+. |---+.+|+++|.+ +|+|+++.|...+.-...... . ..-++...+. ++.......-.+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit----~---~~pl~~~~~~~~~~~~~~~~v~GT 71 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSIT----I---YEPIIIKEVKLEGINSKAYSISGT 71 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcccccccc----C---CCCeEEEeeccCCCCccEEEECCc
Confidence 46666544333 33347888999965 689999998775443222111 0 1113433332 1000000001111
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC----------cc---cHHHHHHHhCCceEEEecc
Q 011848 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~----------~~---~~~~~A~~lgiP~v~~~~~ 141 (476)
+- -+-.+ .+..++. .+||+||+... +. ++..-|...|||.|.++..
T Consensus 72 Pa-DcV~l------al~~l~~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 72 PA-DCVRV------ALDKLVP---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred HH-HHHHH------HHHHhcC---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 11 11111 1223332 38999997543 22 5666678889999998763
No 160
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.78 E-value=3.9 Score=39.10 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.6
Q ss_pred ccEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|+||+|++. |+-|-..-.-++|-.|++.|++|.++++..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 468888888 788999999999999999999988887644
No 161
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.22 E-value=2.5 Score=43.01 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=58.8
Q ss_pred eccCHHH---HhCcCCCCcccc---ccChh-HHHHHHHhCCc---eeccccccchhhhhHhhhcceeeeEEeccccCHHH
Q 011848 349 GWVPQEE---VLAHSAVGGFLT---HCGWN-STLESIVAGMP---MICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNI 418 (476)
Q Consensus 349 ~~vp~~~---ll~~~~~~~~I~---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~ 418 (476)
+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|++.-..--. +...-|..+ ...+.++
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-------~~~~~g~lv-~p~d~~~ 416 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA-------EELSGALLV-NPYDIDE 416 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccch-------hhcCCCEEE-CCCCHHH
Confidence 6777655 5788887 552 44544 77999999999 33333221110 111124444 3458899
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011848 419 VEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDI 466 (476)
Q Consensus 419 l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l 466 (476)
++++|.+++++..+.-+++.++..+.+.+ -+...-+.+++.+|
T Consensus 417 la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 417 VADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 99999999984112333333333333332 34455667776654
No 162
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.45 E-value=4.2 Score=35.99 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 16 AVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
..|+-.....|++.|.++||+|++++
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 163
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=84.34 E-value=2 Score=34.44 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
||++.+.++-.|.....-++..|.++|++|.++......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 68999999999999999999999999999988876444444433
No 164
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.29 E-value=4.3 Score=41.83 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=53.1
Q ss_pred CCceeeeccCH---HHHhCcCCCCcccccc---ChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 343 ERGCIAGWVPQ---EEVLAHSAVGGFLTHC---GWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 343 ~nv~~~~~vp~---~~ll~~~~~~~~I~Hg---G~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
.+|.+.++... ...+....+ +|.=+ |.++.+||+.+|+|+| .......+ +...=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe---CCH
Confidence 46677788773 346667776 77655 7789999999999999 22233344 333445555 488
Q ss_pred HHHHHHHHHHHhH
Q 011848 417 NIVEKAVNDLMVE 429 (476)
Q Consensus 417 ~~l~~ai~~~l~~ 429 (476)
.+|.+++..+|++
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999996
No 165
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=83.78 E-value=17 Score=33.33 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=59.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCCh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (476)
||||+.-=-+. |.--+.+|+++|.+. |+|+++.|...+.-...... . ..-+++..+.++ .....+.+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait----~---~~pl~~~~~~~~----~~~v~GTP 67 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLT----L---TRPLRVEKVDNG----FYAVDGTP 67 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCccccc----C---CCCeEEEEecCC----eEEECCcH
Confidence 36666544443 444578899999998 79999998765433322211 0 111444443211 00011111
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC----------cc---cHHHHHHHhCCceEEEecc
Q 011848 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~----------~~---~~~~~A~~lgiP~v~~~~~ 141 (476)
- -+-.+ .+..++. .+||+||+... +. ++..-|...|||.+.++..
T Consensus 68 a-DcV~~------gl~~l~~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 68 T-DCVHL------ALNGLLD---PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred H-HHHHH------HHHhhcc---CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 1 11111 1223333 38999997543 22 5666677889999998653
No 166
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=82.77 E-value=7.9 Score=37.17 Aligned_cols=134 Identities=12% Similarity=-0.010 Sum_probs=73.5
Q ss_pred CceEEEEec-ccc--cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeec--cCH-HHH
Q 011848 283 QSVIYVSFG-SIA--VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGW--VPQ-EEV 356 (476)
Q Consensus 283 ~~~V~vs~G-s~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--vp~-~~l 356 (476)
++.|.+..| |.. ..+.+.+.++++.+...+.++++..+.+ .+....+.+.+. ..++.+.+- +.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~------~e~~~~~~i~~~-~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE------HEEQRAKRLAEG-FPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHcc-CCcceecCCCCHHHHHHH
Confidence 444443344 432 4667778888888776677766554321 011111222111 123334332 334 458
Q ss_pred hCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEE---ec-cccCHHHHHHHHHHHHh
Q 011848 357 LAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLD---IK-DLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 357 l~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~---~~-~~~~~~~l~~ai~~~l~ 428 (476)
+.++++ +|+. -.|.++=|.+.|+|+|++=--.|-..++-.- +. ..-.. -. ..++++.+.++++++|+
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~-~~-~~~~~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYG-KN-QHACRSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCC-CC-ceeecCCCcccccCCHHHHHHHHHHHhh
Confidence 889996 7776 7789999999999998872212211111110 00 00011 11 58899999999988874
No 167
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.63 E-value=1.7 Score=35.45 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=35.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
+||++...|+.+=.. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 489888888877666 999999999999999999997754444443
No 168
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.17 E-value=7.4 Score=34.04 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=50.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccc-hhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHY-YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
++-+=..+.|-++-...|+++|.++ |+.|.+-+.... .+.+.+... +.+....+| . +
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~---------~~v~~~~~P----~-------D 82 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP---------DRVDVQYLP----L-------D 82 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G---------GG-SEEE--------------S
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC---------CCeEEEEeC----c-------c
Confidence 3333445789999999999999998 899888876333 333433311 112222122 0 1
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCccc--HHHHHHHhCCceEEEec
Q 011848 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSR--AIDAAREVGVSIIYFRT 140 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~--~~~~A~~lgiP~v~~~~ 140 (476)
....++.+++.| +||++|.-....| ....|++.|||.+.++.
T Consensus 83 -----------~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -----------FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----------SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----------CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 123357788888 9999885555554 44557778999999844
No 169
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=81.89 E-value=5.3 Score=35.19 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecch
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (476)
..||+|| .|+..- .+..=|.++|||+|.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 6899988 454333 67777999999999987664
No 170
>PRK05973 replicative DNA helicase; Provisional
Probab=81.89 E-value=7.8 Score=35.32 Aligned_cols=45 Identities=22% Similarity=0.090 Sum_probs=37.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
=+++...|+.|-..-.+.++...+++|+.|.|++.+...+.+...
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 356777789999999999999999999999999988766555444
No 171
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=81.12 E-value=3 Score=40.99 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=64.7
Q ss_pred cCCceee-eccCHHHHhCcCCCCccccccChhHHHHHHHhCCceeccccccchhhhhHhhh---cceeeeEEeccccCHH
Q 011848 342 KERGCIA-GWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPSFADQQINSRFVG---EVWKLGLDIKDLCDRN 417 (476)
Q Consensus 342 ~~nv~~~-~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~---e~~G~g~~~~~~~~~~ 417 (476)
.+++... +..+-.++|..+++ +||-- ...+.|.++.++|++....-.|.+...+-+- +....|..+ -+.+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~---~~~~ 324 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV---YNFE 324 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE---SSHH
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee---CCHH
Confidence 4566665 55568899999998 99987 5589999999999998765555553332110 112334333 5789
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011848 418 IVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCN 458 (476)
Q Consensus 418 ~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 458 (476)
+|.++|..++++ ...++++-+++.+++-. .++|.++++.
T Consensus 325 eL~~~i~~~~~~-~~~~~~~~~~~~~~~~~-~~Dg~s~eri 363 (369)
T PF04464_consen 325 ELIEAIENIIEN-PDEYKEKREKFRDKFFK-YNDGNSSERI 363 (369)
T ss_dssp HHHHHHTTHHHH-HHHTHHHHHHHHHHHST-T--S-HHHHH
T ss_pred HHHHHHHhhhhC-CHHHHHHHHHHHHHhCC-CCCchHHHHH
Confidence 999999999874 14566667777777754 3345444443
No 172
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.99 E-value=32 Score=29.15 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=58.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---eCc--cchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFL---NTE--HYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
-|.+++.++.|-....+.+|-..+.+|+.|.|+ -+. .....+.+. .+++.+.....+.....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~----------l~~v~~~~~g~~~~~~~--- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER----------LPNIEIHRMGRGFFWTT--- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh----------CCCcEEEECCCCCccCC---
Confidence 578889999999999999999999999999994 332 111122222 44677777664332211
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~ 122 (476)
......... ........++.+.. .++|+||-|-+..
T Consensus 71 -~~~~~~~~~-a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 71 -ENDEEDIAA-AAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred -CChHHHHHH-HHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 111111111 12222334455554 4999999997654
No 173
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=80.93 E-value=17 Score=34.05 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=63.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCccchhhHhhcccccccccccCCCe-eEEEcCCCCCCCCCCCCC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNTEHYYDRVIRHSSDAFSRYMQIPGF-QFKTLTDGLPRDHPRTPD 84 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (476)
||+++-..+.|++.-+..+.++|+++. -+|++++.+.+.+.+ +. .|.+ +++.++... ...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~-~~----------~p~id~v~~~~~~~------~~~ 63 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL-EL----------MPEVDRVIVLPKKH------GKL 63 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH-hc----------CCccCEEEEcCCcc------ccc
Confidence 689999999999999999999999984 899999998654444 33 3345 333333100 000
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEE
Q 011848 85 KFPELVDSLNCATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~ 137 (476)
.. ....+++..+ ..++|+++.=........++...+++...
T Consensus 64 ~~------------~~~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 64 GL------------GARRRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ch------------HHHHHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 11 1122333333 24899999665555555566666666554
No 174
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=80.68 E-value=7.5 Score=39.39 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=64.1
Q ss_pred CccEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCccc-hh--hHhhcccccccccccCCCeeEEEcCCCCCCCCC
Q 011848 5 DHVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEHY-YD--RVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP 80 (476)
Q Consensus 5 ~~~~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (476)
.|.+|+|... ...|-..-...|++.|+++|++|..+-+... .+ ...... +.+..+.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~--------------------g~~~~~l 61 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAAT--------------------GRPSRNL 61 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHh--------------------CCCcccC
Confidence 3446766644 4679999999999999999999998866321 11 010100 1111111
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC------------cccHHHHHHHhCCceEEEecch
Q 011848 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY------------MSRAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 142 (476)
.. . .+ ..+.+++.++.+..+.|++|.+.. ......+|+.++.|++.+....
T Consensus 62 d~-~----~~------~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 62 DS-W----MM------GEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred Cc-e----eC------CHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 00 0 00 123444445444347899887543 1247799999999999998754
No 175
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.58 E-value=50 Score=30.84 Aligned_cols=87 Identities=28% Similarity=0.365 Sum_probs=54.6
Q ss_pred CCceeeeccC---HHHHhCcCCCCccccc---cChh-HHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccC
Q 011848 343 ERGCIAGWVP---QEEVLAHSAVGGFLTH---CGWN-STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCD 415 (476)
Q Consensus 343 ~nv~~~~~vp---~~~ll~~~~~~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~ 415 (476)
+++.+.++++ ...++..+++ ++.- .|.| ++.||+++|+|++.... ......+ ...+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCCCC
Confidence 6777789888 3446776776 5554 3554 46999999999966543 2223333 2322355 332227
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHH
Q 011848 416 RNIVEKAVNDLMVERKEEFMESAD 439 (476)
Q Consensus 416 ~~~l~~ai~~~l~~~~~~~~~~a~ 439 (476)
.+.+.+++..++++ .+.++...
T Consensus 329 ~~~~~~~i~~~~~~--~~~~~~~~ 350 (381)
T COG0438 329 VEELADALEQLLED--PELREELG 350 (381)
T ss_pred HHHHHHHHHHHhcC--HHHHHHHH
Confidence 89999999999986 43344433
No 176
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=79.81 E-value=24 Score=32.61 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=57.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC---CCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHA---GIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPD 84 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r---GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (476)
|||+.-=-+. |---+.+|+++|.+. |++|+++.|...+.-...... . ..-+++..+.++. ..-.+
T Consensus 2 ~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT----~---~~pl~~~~~~~~~----yav~G 69 (261)
T PRK13931 2 RILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS----Y---THPMMIAELGPRR----FAAEG 69 (261)
T ss_pred eEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc----C---CCCeEEEEeCCCe----EEEcC
Confidence 5555433333 334466778888763 479999998765432222211 0 1125555443210 11111
Q ss_pred ChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC----------cc---cHHHHHHHhCCceEEEec
Q 011848 85 KFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY----------MS---RAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~----------~~---~~~~~A~~lgiP~v~~~~ 140 (476)
.+.. +-.+ .+..++.. .+||+||+... +. ++..-|...|||.+.++.
T Consensus 70 TPaD-CV~l------al~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 70 SPAD-CVLA------ALYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred chHH-HHHH------HHHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1111 1111 12333331 38999997543 22 466667788999999875
No 177
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.62 E-value=14 Score=34.19 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=54.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCCh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (476)
|||+++.. .|. -..|++.|.++||+|+..+............+ ...+. . +.+
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g----------~~~v~-------~------g~l 52 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ----------ALTVH-------T------GAL 52 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC----------CceEE-------E------CCC
Confidence 36666543 332 67899999999999988776543222211110 01100 0 000
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc------cHHHHHHHhCCceEEE
Q 011848 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYF 138 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~------~~~~~A~~lgiP~v~~ 138 (476)
....+.+++++. ++|+||--.+-+ -+..+++.+|||++.+
T Consensus 53 ----------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ----------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 012355666664 899888444433 4778899999999997
No 178
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=78.19 E-value=27 Score=32.31 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=28.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
||||+.-=-+. |---+.+|+++|...| +|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 36666555444 5566888999998887 799999876543
No 179
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=78.07 E-value=11 Score=34.03 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecchh
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (476)
.-||+|+ .|+..- -+..=|.++|||+|.++-+.+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3499876 676544 677779999999999877643
No 180
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=77.37 E-value=72 Score=30.86 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=54.1
Q ss_pred cCCHHHHHHHH-HHHhhC-CCcEEEEEcCCCCCCCCCCCCCchHHHH--HhcCCceeeeccCHHH---HhCcCCCCcccc
Q 011848 295 VMSRDQLIEFY-YGLVHS-KKSFLWVIRPDLISGKDGENQIPEELLE--ATKERGCIAGWVPQEE---VLAHSAVGGFLT 367 (476)
Q Consensus 295 ~~~~~~~~~~~-~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vp~~~---ll~~~~~~~~I~ 367 (476)
+...+++..++ .-+.+. ..+|++..++++. ..-++..| .+.+++.+.+-+|++. +|.+.++ |++
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~GDGPk~-------i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--Fln 277 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKR-------IDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLN 277 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEecCCccc-------chHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--Eec
Confidence 44556666655 444433 4687777654322 22223322 2568899999999754 7778886 776
Q ss_pred ccC----hhHHHHHHHhCCceecc
Q 011848 368 HCG----WNSTLESIVAGMPMICW 387 (476)
Q Consensus 368 HgG----~gs~~eal~~GvP~l~~ 387 (476)
-.= .-++.||..+|.|+|..
T Consensus 278 tSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 278 TSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEe
Confidence 543 33678999999999875
No 181
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=77.28 E-value=8.6 Score=38.67 Aligned_cols=139 Identities=9% Similarity=0.090 Sum_probs=85.7
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCC-CcEEEEEcCCCCCCCCCCCCCchHHH--HHhcCCceee-eccC-H-H
Q 011848 281 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSK-KSFLWVIRPDLISGKDGENQIPEELL--EATKERGCIA-GWVP-Q-E 354 (476)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~-~~vp-~-~ 354 (476)
..+.+++++ +.+.++.+....+.++ ..|=+.... ...+.+. ++. +|+.+. ++.+ . .
T Consensus 281 ~~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~t----------e~s~kL~~L~~y-~nvvly~~~~~~~l~ 342 (438)
T TIGR02919 281 YRKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALT----------EMSSKLMSLDKY-DNVKLYPNITTQKIQ 342 (438)
T ss_pred CcccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecC----------cccHHHHHHHhc-CCcEEECCcChHHHH
Confidence 345566665 2566666666666654 444433321 1112221 223 777776 6677 3 5
Q ss_pred HHhCcCCCCccccccC--hhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhHhHH
Q 011848 355 EVLAHSAVGGFLTHCG--WNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVERKE 432 (476)
Q Consensus 355 ~ll~~~~~~~~I~HgG--~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~~~~ 432 (476)
+++..|++=+-|+||+ ..++.||+.+|+|++..=...- +...+ .. |-.+ ..-+.+++.++|.++|++ +
T Consensus 343 ~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~-~~~~~~~m~~~i~~lL~d--~ 412 (438)
T TIGR02919 343 ELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIF-EHNEVDQLISKLKDLLND--P 412 (438)
T ss_pred HHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---Ccee-cCCCHHHHHHHHHHHhcC--H
Confidence 6999999977888876 6799999999999998743321 11222 22 3233 334689999999999997 6
Q ss_pred HHHHHHHHHHHHHHH
Q 011848 433 EFMESADRMANLAKK 447 (476)
Q Consensus 433 ~~~~~a~~l~~~~~~ 447 (476)
+-.+.+...+++..+
T Consensus 413 ~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 413 NQFRELLEQQREHAN 427 (438)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555555555555444
No 182
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=77.24 E-value=48 Score=29.34 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhc-CCceeeeccCHHHHhC
Q 011848 280 QPKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATK-ERGCIAGWVPQEEVLA 358 (476)
Q Consensus 280 ~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vp~~~ll~ 358 (476)
-.+++++.|..|.++ ...+..|...+.++.++.. .+.+.+.+..+ .++..........-+.
T Consensus 8 l~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-----------~~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 8 LSNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-----------ELTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred cCCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-----------CCCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 346888888888775 3445566667777665542 12233222222 2344444444455677
Q ss_pred cCCCCccccccChhHHHHHHH----hCCceeccccccchhhhh-----HhhhcceeeeEEec-c---ccCHHHHHHHHHH
Q 011848 359 HSAVGGFLTHCGWNSTLESIV----AGMPMICWPSFADQQINS-----RFVGEVWKLGLDIK-D---LCDRNIVEKAVND 425 (476)
Q Consensus 359 ~~~~~~~I~HgG~gs~~eal~----~GvP~l~~P~~~DQ~~na-----~r~~e~~G~g~~~~-~---~~~~~~l~~ai~~ 425 (476)
.+++ +|.--+...+.+.++ .++++-+ .|.+..+ ..+ ++-++-+.+. . ..-+..|++.|.+
T Consensus 70 ~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 70 DAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred CceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 7886 888778777777665 3444433 3443332 223 2333434443 1 3334667777777
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHH
Q 011848 426 LMVERKEEFMESADRMANLAKKS 448 (476)
Q Consensus 426 ~l~~~~~~~~~~a~~l~~~~~~~ 448 (476)
++..+-..+-+.+.++.+.+++.
T Consensus 143 ~~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 143 LYDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HcchhHHHHHHHHHHHHHHHHHh
Confidence 66532245667777777777764
No 183
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.91 E-value=6.8 Score=31.19 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=36.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
.|+++.+.+..-|-.-...|+..|.++||+|.++......+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELV 44 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 48899999999999999999999999999999996544334443
No 184
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=76.57 E-value=8 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=25.6
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecchh
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (476)
..||+|| .|...- .+..=|.++|||+|.+.-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 4799877 565433 677779999999999876643
No 185
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=75.95 E-value=7.6 Score=40.07 Aligned_cols=73 Identities=15% Similarity=0.042 Sum_probs=46.0
Q ss_pred CHHHHhCcCCCCcccc---ccCh-hHHHHHHHhCCceecccccc-chhhhhHhhhcce-eeeEEec-c-----ccCHHHH
Q 011848 352 PQEEVLAHSAVGGFLT---HCGW-NSTLESIVAGMPMICWPSFA-DQQINSRFVGEVW-KLGLDIK-D-----LCDRNIV 419 (476)
Q Consensus 352 p~~~ll~~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~-DQ~~na~r~~e~~-G~g~~~~-~-----~~~~~~l 419 (476)
+..+++..|++ +|. +=|+ -++.||+++|+|+|+....+ ..+.. .+...- ..|+.+. . .-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhccCCCceEEEecCCccchHHHHHHH
Confidence 46778888888 554 4454 48999999999999987532 22222 121111 2465554 1 3456778
Q ss_pred HHHHHHHHh
Q 011848 420 EKAVNDLMV 428 (476)
Q Consensus 420 ~~ai~~~l~ 428 (476)
++++.++++
T Consensus 543 a~~m~~~~~ 551 (590)
T cd03793 543 TQYMYEFCQ 551 (590)
T ss_pred HHHHHHHhC
Confidence 888888776
No 186
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.92 E-value=67 Score=30.30 Aligned_cols=118 Identities=12% Similarity=0.152 Sum_probs=65.4
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC--CCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT--DGLPRDHPRTP 83 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 83 (476)
.-+|.|.-.|+-|-=.-.=+|+..|.++||+|-++.-......- +|... ...+++..+. ++.--..+.+.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T---GGsiL-----GDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT---GGSIL-----GDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC---Ccccc-----ccHhhHHhhccCCCeEEeecCCC
Confidence 34778888899999999999999999999999999853321111 11000 0012222111 00000001122
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc--cHHHHHHHhCCceEEE
Q 011848 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYF 138 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~--~~~~~A~~lgiP~v~~ 138 (476)
+.+........ ..-.+++.. .+|+||.+..-. .=..+++...+-.+..
T Consensus 123 G~lGGlS~at~-----~~i~~ldAa--G~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 123 GTLGGLSRATR-----EAIKLLDAA--GYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred ccchhhhHHHH-----HHHHHHHhc--CCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 22222222222 234555665 999999997655 4556677666665554
No 187
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=75.24 E-value=63 Score=30.65 Aligned_cols=80 Identities=24% Similarity=0.224 Sum_probs=57.3
Q ss_pred CCceee-eccC---HHHHhCcCCCCccccc--cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-cccC
Q 011848 343 ERGCIA-GWVP---QEEVLAHSAVGGFLTH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD 415 (476)
Q Consensus 343 ~nv~~~-~~vp---~~~ll~~~~~~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~ 415 (476)
+|+.+. +++| +.++|..|+++.|+|+ =|.||+.-.++.|+|+++-- +=+.+.... | .|+-+-.+ +.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-E-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-h-CCCeEEecCCccc
Confidence 677765 7787 4568999999777765 48999999999999998753 223333333 3 47777566 7888
Q ss_pred HHHHHHHHHHHH
Q 011848 416 RNIVEKAVNDLM 427 (476)
Q Consensus 416 ~~~l~~ai~~~l 427 (476)
...+.++=+++.
T Consensus 281 ~~~v~e~~rql~ 292 (322)
T PRK02797 281 EDIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHHH
Confidence 888877655443
No 188
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=74.26 E-value=58 Score=28.95 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHH-hcCCceeeeccCHHHHhCc
Q 011848 281 PKQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEA-TKERGCIAGWVPQEEVLAH 359 (476)
Q Consensus 281 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~vp~~~ll~~ 359 (476)
.++++++|..|... ..-+..|.+.+.++.++... +.+.+.+- ...++....--.+...+..
T Consensus 8 ~gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~-----------~~~~l~~l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE-----------LESELTLLAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CCCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC-----------CCHHHHHHHHcCCEEEEeCCCCHHHhCC
Confidence 36788888888775 34456666788887766531 22222211 1135554321222445667
Q ss_pred CCCCccccccChhHHHHHH-----HhCCce--eccccccchhhhhHhhhcceeeeEEec----cccCHHHHHHHHHHHHh
Q 011848 360 SAVGGFLTHCGWNSTLESI-----VAGMPM--ICWPSFADQQINSRFVGEVWKLGLDIK----DLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 360 ~~~~~~I~HgG~gs~~eal-----~~GvP~--l~~P~~~DQ~~na~r~~e~~G~g~~~~----~~~~~~~l~~ai~~~l~ 428 (476)
+++ +|..-|...+.+.+ ..|+|+ +--|-.+|=. .-..+ ++-++-+.+. ...-+..|++.|.+++.
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~-~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFI-FPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLLP 145 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEE-EeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhcc
Confidence 776 88877776554443 467887 3333333322 22223 2323434343 13344667777777775
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 011848 429 ERKEEFMESADRMANLAKK 447 (476)
Q Consensus 429 ~~~~~~~~~a~~l~~~~~~ 447 (476)
++-..+-+.+.++.+.+++
T Consensus 146 ~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 146 PSLGDLATLAATWRDAVKK 164 (205)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 2223455555566666554
No 189
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.07 E-value=11 Score=35.23 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=59.8
Q ss_pred CceEEEEecccc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHh-cCCce-eeec--cC-HH
Q 011848 283 QSVIYVSFGSIA---VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEAT-KERGC-IAGW--VP-QE 354 (476)
Q Consensus 283 ~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~-~~~~--vp-~~ 354 (476)
++.|.+..|+.. ..+.+.+.++++.+...++++++..+.+ +......+.+.. ..++. +.+- +. ..
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~-------e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~ 193 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPA-------ERELAEEIAAALGGPRVVNLAGKTSLRELA 193 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechh-------hHHHHHHHHHhcCCCccccCcCCCCHHHHH
Confidence 667777777654 5667888889988887788887665321 111112222221 12222 2232 22 35
Q ss_pred HHhCcCCCCccccccChhHHHHHHHhCCceecc
Q 011848 355 EVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 387 (476)
Q Consensus 355 ~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 387 (476)
.++.++++ +|+.- .|.++-|.+.|+|++++
T Consensus 194 ~li~~~~l--~I~~D-sg~~HlA~a~~~p~i~l 223 (279)
T cd03789 194 ALLARADL--VVTND-SGPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 58888997 88885 37788888999999877
No 190
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.11 E-value=15 Score=34.25 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=33.6
Q ss_pred ceeeeccCHHHHhCcCCCCccccccChhHHHHHHHhCCceecccc
Q 011848 345 GCIAGWVPQEEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICWPS 389 (476)
Q Consensus 345 v~~~~~vp~~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~ 389 (476)
+.+.+-++-.+++.+++. +||-.+ .+-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 334467888899999996 777644 488999999999999873
No 191
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=72.01 E-value=15 Score=40.09 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHhCcCCCCcccc---ccChh-HHHHHHHhCCc---eeccccccchhhhhHhhhccee-eeEEeccccCHHHHHHHHHHH
Q 011848 355 EVLAHSAVGGFLT---HCGWN-STLESIVAGMP---MICWPSFADQQINSRFVGEVWK-LGLDIKDLCDRNIVEKAVNDL 426 (476)
Q Consensus 355 ~ll~~~~~~~~I~---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~r~~e~~G-~g~~~~~~~~~~~l~~ai~~~ 426 (476)
+++..+++ |+. .-|+| +..|++++|+| +++++-+ -..+. .+| -|+.+ ...+.++++++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~----~l~~~allV-nP~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQ----SLGAGALLV-NPWNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchh----hhcCCeEEE-CCCCHHHHHHHHHHH
Confidence 57788887 553 44776 67799999999 4444422 11111 123 35555 346899999999999
Q ss_pred Hh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Q 011848 427 MV-ERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMMS 470 (476)
Q Consensus 427 l~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~~~~ 470 (476)
|+ + .+.-+++.+++.+.++. .+...-++.|++.|....
T Consensus 441 L~m~-~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 441 LNMS-DEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HhCC-HHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 98 3 13444555556665554 344566677888776554
No 192
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=71.92 E-value=7.9 Score=31.91 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=38.7
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
++.||++.+.+.-||-.-.--+++.|+..|.+|...+.-...+.+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v 56 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAV 56 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHH
Confidence 5679999999999999999999999999999999887544334333
No 193
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=71.87 E-value=23 Score=32.73 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=33.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 10 AILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
+|..-|+.|...-..++|..+++.|++|.++.... ...+...
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~-~~sl~~~ 45 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP-AHSLSDS 45 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC-cccHHHH
Confidence 44445889999999999999999999999998755 3444443
No 194
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.35 E-value=12 Score=34.93 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=60.4
Q ss_pred eccCHHHHhCcCCCCccccccChhHHH-HHHHhCCceeccccccchhh--hhHhhhcceeeeEEeccccCHHHHHHHHHH
Q 011848 349 GWVPQEEVLAHSAVGGFLTHCGWNSTL-ESIVAGMPMICWPSFADQQI--NSRFVGEVWKLGLDIKDLCDRNIVEKAVND 425 (476)
Q Consensus 349 ~~vp~~~ll~~~~~~~~I~HgG~gs~~-eal~~GvP~l~~P~~~DQ~~--na~r~~e~~G~g~~~~~~~~~~~l~~ai~~ 425 (476)
.|-...++|.++++ .|--. ||.. +++--|+|+|.+|-.+-|+. .|.|=..-+|+++.+.+ -.+..-..+.++
T Consensus 301 sqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~ 375 (412)
T COG4370 301 SQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQE 375 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHH
Confidence 55555566665554 44333 3333 35667999999999998876 45554445677777652 122222334445
Q ss_pred HHhHhHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011848 426 LMVERKEEFMESADR-MANLAKKSVNKGGSSYCNLDRLVNDIKM 468 (476)
Q Consensus 426 ~l~~~~~~~~~~a~~-l~~~~~~~~~~~g~~~~~~~~~i~~l~~ 468 (476)
+|.| +.+.+.++. =++++-++ | ++..+.|.+.+
T Consensus 376 ll~d--p~r~~air~nGqrRiGqa----G----aa~rIAe~l~e 409 (412)
T COG4370 376 LLGD--PQRLTAIRHNGQRRIGQA----G----AARRIAEELGE 409 (412)
T ss_pred HhcC--hHHHHHHHhcchhhccCc----c----hHHHHHHHHHH
Confidence 8888 887777763 23333332 3 44555555544
No 195
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.04 E-value=7.4 Score=33.59 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|||.++.- .|++ --.|+++...|||+||-++-
T Consensus 1 mKIaiIgA--sG~~--Gs~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 1 MKIAIIGA--SGKA--GSRILKEALKRGHEVTAIVR 32 (211)
T ss_pred CeEEEEec--Cchh--HHHHHHHHHhCCCeeEEEEe
Confidence 57776643 3333 24689999999999999986
No 196
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=70.72 E-value=73 Score=27.91 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=61.9
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc-----hhhHhhcccccccccccCCCeeEEEcCCCCCCCC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY-----YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDH 79 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
..-.|.+++.++.|-....+.+|-..+.+|+.|.++-.-.. .....+. .+++.+.....++....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~----------l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF----------GGGVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc----------CCCcEEEECCCCCcccC
Confidence 34589999999999999999999999999999998853221 1111121 34678887765433221
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc
Q 011848 80 PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~ 122 (476)
........ .....-...++.+.+ .++|+||-|-...
T Consensus 91 ----~~~~e~~~-~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 ----QDRERDIA-AAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred ----CCcHHHHH-HHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11111111 111122333444444 5999999997654
No 197
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=69.90 E-value=9.1 Score=28.08 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=32.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.-++++.++...|...+-.+|+.|++.|..|...-.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 478899999999999999999999999999986653
No 198
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=69.45 E-value=37 Score=34.02 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=53.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc----chhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH----YYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (476)
|+.++..+.. .+.+++.|.+-|-+|..+++.. +.+...+... .+... ....
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~-------------------~~~~~-v~~~ 341 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE-------------------MLGVE-VKYR 341 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH-------------------hcCCC-ceec
Confidence 7777776666 8889999999999999886652 1111111100 00000 0000
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEe
Q 011848 84 DKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~ 139 (476)
.++. +.+ +.+++. +||++|... .+..+|+++|||.+.+.
T Consensus 342 ~dl~-----------~~~-~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLE-----------DDM-EAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHH-----------HHH-HHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 0111 111 334554 999999883 36778999999999863
No 199
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=68.60 E-value=7.5 Score=33.89 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCccchhhHhh
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~ 51 (476)
|+||++.-.|+-| .+=...|.++|.+ .||+|.++.++...+.+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 5589888888887 6679999999999 5999999999775444443
No 200
>PRK14099 glycogen synthase; Provisional
Probab=68.56 E-value=7.8 Score=39.67 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=47.4
Q ss_pred cCCc-eeeeccCHH-HHh-CcCCCCcccc---ccChh-HHHHHHHhCCceecccccc--chhhhhHhhhcc--eeeeEEe
Q 011848 342 KERG-CIAGWVPQE-EVL-AHSAVGGFLT---HCGWN-STLESIVAGMPMICWPSFA--DQQINSRFVGEV--WKLGLDI 410 (476)
Q Consensus 342 ~~nv-~~~~~vp~~-~ll-~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~r~~e~--~G~g~~~ 410 (476)
++++ .+.+|-... .++ +.+++ |+. +=|.| +.+||+++|+|.|+....+ |-........+. -+.|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4555 345663332 233 45776 664 34444 7789999997766654321 322221111011 1467777
Q ss_pred ccccCHHHHHHHHHH---HHhH
Q 011848 411 KDLCDRNIVEKAVND---LMVE 429 (476)
Q Consensus 411 ~~~~~~~~l~~ai~~---~l~~ 429 (476)
+ ..++++|.++|.+ +++|
T Consensus 427 ~-~~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 427 S-PVTADALAAALRKTAALFAD 447 (485)
T ss_pred C-CCCHHHHHHHHHHHHHHhcC
Confidence 4 4588999999997 4555
No 201
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=68.36 E-value=31 Score=34.51 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=25.3
Q ss_pred HHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEe
Q 011848 103 EMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 103 ~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~ 139 (476)
+.+++. +||++|.. ..+..+|+++|||.+.+.
T Consensus 344 ~~~~~~--~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEY--RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhc--CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 344554 99999988 337889999999999863
No 202
>PRK14098 glycogen synthase; Provisional
Probab=68.32 E-value=8.5 Score=39.44 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=30.2
Q ss_pred CccEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 5 DHVHVAILPLP------AVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 5 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
+||||+|++.- +.|=-.-.-.|.++|+++||+|.++.|-
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57999999863 2233345678899999999999999983
No 203
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.83 E-value=7.5 Score=33.84 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhh
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDR 48 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 48 (476)
|.||++...|+.|=.. ...+.+.|+++|++|.++.++...+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 4588888888776555 89999999999999999998764333
No 204
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=67.77 E-value=50 Score=33.30 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
.+.+.++.. +||++|.... ...+|+++|||++.+
T Consensus 368 e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 368 HLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 345666665 9999999864 689999999999876
No 205
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=67.60 E-value=11 Score=37.96 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=29.4
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
|.+ +||||++-.+++-| +|+++|.+-++...+++.+.|
T Consensus 1 ~~~--~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 1 MQV--KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCC--CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 454 57999999999877 689999999876555555554
No 206
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=67.32 E-value=50 Score=29.15 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=31.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
+.||.+=..|+-|-.+.||.=|+.|.++|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5789999999999999999999999999999999876543
No 207
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=67.27 E-value=8.6 Score=33.81 Aligned_cols=41 Identities=10% Similarity=-0.012 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccch
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (476)
..||++.-.|+.|=..-...++++|.++||+|.++.++...
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 34888888877654444799999999999999999987643
No 208
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.74 E-value=8.1 Score=36.98 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=32.1
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (476)
|.++ +|||+|+-.|+.| ..+|..|++.||+|+++.... .+.+
T Consensus 1 ~~~~-~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~ 42 (313)
T PRK06249 1 MDSE-TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAV 42 (313)
T ss_pred CCCc-CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHH
Confidence 5554 4599999888887 456788999999999998754 3443
No 209
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.30 E-value=5.4 Score=34.84 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=26.4
Q ss_pred EEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNS------------MLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||++...|+.=.+.| -..||+++..|||+|+++.++.
T Consensus 5 ~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 5 KVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred EEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 666666666555543 5789999999999999999874
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.11 E-value=9.5 Score=35.23 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=40.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
..++|+-.|+.|-..=..+||.+|.++|+.|+|++.++....+...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 4788888999999999999999999999999999998876666554
No 211
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=65.83 E-value=64 Score=27.34 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=63.6
Q ss_pred EEEcCCCccCHHHHH-HHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCC--------CC
Q 011848 10 AILPLPAVGHVNSML-NLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRD--------HP 80 (476)
Q Consensus 10 l~~~~~~~GH~~p~l-~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 80 (476)
+.+.+...+.+..++ .+|..|+++|++|.=+.... ...-... ..++....++++.... ..
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~-~~~~~~~----------~~~m~l~dl~~G~~~~IsQ~LG~gs~ 70 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRN-TADGDGG----------RCDMDLRDLPSGRRIRISQDLGPGSR 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc-cCCCCCC----------ccceEEEECCCCCEEEEeeccCCCCc
Confidence 445566667777754 67999999999987666432 1111100 2246666666533221 11
Q ss_pred CCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc---------cHHHHHHHhCCceEEEecch
Q 011848 81 RTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---------RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 142 (476)
.-.-+...+ . .....++.-+++ ++|++|.+-|.- ..+..|-..|||+++..+..
T Consensus 71 gCrLD~~~L----a-~A~~~l~~al~~---~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 71 GCRLDPGAL----A-EASAALRRALAE---GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred ccccCHHHH----H-HHHHHHHHHHhc---CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 011112211 1 122334555554 899999987743 24444667799999987654
No 212
>PRK06321 replicative DNA helicase; Provisional
Probab=65.68 E-value=24 Score=35.86 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=35.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|++...|+.|-..-.+.+|...+. .|+.|.|++.+-....+...
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHH
Confidence 466777999999999999999874 59999999987766555444
No 213
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=65.48 E-value=40 Score=32.26 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=38.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhH
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRV 49 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~ 49 (476)
|||+++-..+.|++.-..++.+.|++. +.+|++++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 599999999999999999999999997 9999999987654433
No 214
>PRK05595 replicative DNA helicase; Provisional
Probab=65.23 E-value=27 Score=35.35 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+...
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence 45677789999999999998876 569999999987665555444
No 215
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=65.20 E-value=61 Score=27.35 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.1
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 011848 13 PLPAVGHVNSMLNLAELLGHAGIKITFL 40 (476)
Q Consensus 13 ~~~~~GH~~p~l~La~~L~~rGH~Vt~~ 40 (476)
+.+.-|-..-.+.|+..|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567889999999999999999999997
No 216
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.49 E-value=1.1e+02 Score=29.57 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=76.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDK 85 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (476)
+.|++++..|-.||--.|--=|..|++.|.+|.+++....... ++... .|+++++.++. ++.... .+.-
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~~--------hprI~ih~m~~-l~~~~~-~p~~ 80 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELLN--------HPRIRIHGMPN-LPFLQG-GPRV 80 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHhc--------CCceEEEeCCC-CcccCC-Cchh
Confidence 4589999999999999999999999999999999997553222 22211 67899999884 222211 1111
Q ss_pred hHHHHHHHHhhCcHHHHHHHHcCCCCceEEEec-CCcccHHHHHHHh----CCceEEEecchhhH
Q 011848 86 FPELVDSLNCATPPLLKEMVSDSKSPVNCIITD-GYMSRAIDAAREV----GVSIIYFRTISACA 145 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D-~~~~~~~~~A~~l----giP~v~~~~~~~~~ 145 (476)
+...+..++..+ ..+-.++.. .++|.|+.. +-+.....++..+ |...++=+....+.
T Consensus 81 ~~l~lKvf~Qfl-~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 81 LFLPLKVFWQFL-SLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhHHHHHHHHH-HHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 222333344322 223333332 488888754 3444455554444 67777766665544
No 217
>PRK08506 replicative DNA helicase; Provisional
Probab=64.48 E-value=25 Score=35.83 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=36.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|++...|+.|-..-.+.+|...++.|+.|.|++.+-....+...
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~R 238 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLR 238 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHH
Confidence 56677789999999999999998899999999988766655543
No 218
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=64.28 E-value=9.6 Score=34.60 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=27.6
Q ss_pred cEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNS------------MLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|||++..+|+.=.+.| -.+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 4667666666555543 478899999999999999753
No 219
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=64.06 E-value=15 Score=32.45 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=38.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
..||++.+.++-.|-....-++..|.++|++|++++..-..+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 45999999999999999999999999999999988765444444443
No 220
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=63.99 E-value=44 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=27.7
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 9 VAIL-PLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 9 il~~-~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|++. +....|-..-.+.|++.|+++|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 4444 345679999999999999999999988763
No 221
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=63.96 E-value=15 Score=29.56 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=37.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
||++.+.++-.|..-..-++.-|...|++|.+.......+.+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~ 44 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVE 44 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 68999999999999999999999999999999997544444433
No 222
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=63.78 E-value=17 Score=33.13 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCCceEEEEecccc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCC----c-eeeeccC
Q 011848 281 PKQSVIYVSFGSIA---VMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKER----G-CIAGWVP 352 (476)
Q Consensus 281 ~~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n----v-~~~~~vp 352 (476)
.+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.. +. .....+...++ + .+.+-.+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE--------EQ-EKEIADQIAAGLQNPVINLAGKTS 173 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH--------HH-HHHHHHHHHTTHTTTTEEETTTS-
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch--------HH-HHHHHHHHHHhcccceEeecCCCC
Confidence 36788888888755 5677889999999988886766555321 10 01111112222 2 2323233
Q ss_pred --H-HHHhCcCCCCccccccChhHHHHHHHhCCceecc
Q 011848 353 --Q-EEVLAHSAVGGFLTHCGWNSTLESIVAGMPMICW 387 (476)
Q Consensus 353 --~-~~ll~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 387 (476)
+ ..++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 174 l~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 3 458889995 7765 778999999999999998
No 223
>PRK11519 tyrosine kinase; Provisional
Probab=63.24 E-value=1e+02 Score=33.48 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=67.1
Q ss_pred ccEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhccc-ccccc---c-------------ccCCCe
Q 011848 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS-DAFSR---Y-------------MQIPGF 66 (476)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~-~~~~~---~-------------~~~~~~ 66 (476)
..|+++++. |+-|-..-...||..|++.|++|.++-.......+....+ ..... + ...+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 457777666 6778888899999999999999999976432222222221 00000 0 001122
Q ss_pred eEEEcCCCCCCCCCCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc----cHHHHHHHhCCceEEEec
Q 011848 67 QFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~----~~~~~A~~lgiP~v~~~~ 140 (476)
.+.+.. . ...+....+ ....+.++++.+..++|+||.|.--. -+..++...+...+++..
T Consensus 605 ~~lp~g--~------~~~~~~ell------~s~~~~~ll~~l~~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~ 668 (719)
T PRK11519 605 DLIPRG--Q------VPPNPSELL------MSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARY 668 (719)
T ss_pred EEEeCC--C------CCCCHHHHh------hHHHHHHHHHHHHhcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeC
Confidence 222211 1 111222221 12345666666545899999996533 356677777766665543
No 224
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.19 E-value=1e+02 Score=28.60 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=28.6
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.|++.++. |+-|-..-...||..|++.|++|.++-.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 46655555 5667777889999999999999999965
No 225
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.92 E-value=5.5 Score=33.68 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=27.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||.++-.|..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 677888887775 78999999999999999864
No 226
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=62.55 E-value=15 Score=31.21 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=57.2
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhC-CCEEEEEeCcc--ch-hhHhhcccccccccccCCCe-eEEEcCCCCCCCC
Q 011848 9 VAILPLPAVGHVNS----MLNLAELLGHA-GIKITFLNTEH--YY-DRVIRHSSDAFSRYMQIPGF-QFKTLTDGLPRDH 79 (476)
Q Consensus 9 il~~~~~~~GH~~p----~l~La~~L~~r-GH~Vt~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (476)
|+++.--..|.+++ .+..|++|++. |.+|+.++... .. +.+.+..+ .-+. +.+.+++..-..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~--------~~G~d~v~~~~~~~~~~- 72 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALA--------KYGADKVYHIDDPALAE- 72 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHH--------STTESEEEEEE-GGGTT-
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhh--------hcCCcEEEEecCccccc-
Confidence 44444433555554 68889999986 88888777542 12 22111111 0112 233332100000
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc---cHHHHHHHhCCceEEEecc
Q 011848 80 PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~---~~~~~A~~lgiP~v~~~~~ 141 (476)
.... .....+.+++++. +||+|+...-.. .+..+|.++|.|++.-...
T Consensus 73 ----~~~~--------~~a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 73 ----YDPE--------AYADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp ----C-HH--------HHHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred ----cCHH--------HHHHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 0111 1223455666665 999999776554 6888999999999986553
No 227
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.99 E-value=15 Score=33.17 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=27.5
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|..+++++|++. |+.|+ --..|++.|.++||+|++++..
T Consensus 1 ~~~~~~~~vlIt--Gasg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 1 MGSLMGRVALVT--GAARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCCCEEEEe--CCCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 667766677663 34444 4578899999999999776653
No 228
>PRK08760 replicative DNA helicase; Provisional
Probab=61.94 E-value=22 Score=36.23 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=35.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|++...|+.|-..-.+.+|...+. .|+.|.|++.+...+.+...
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~R 276 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMR 276 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHH
Confidence 566777999999999999998875 49999999987766544443
No 229
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=61.91 E-value=36 Score=29.46 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=21.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCE
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIK 36 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~ 36 (476)
|||+|+.+++. ..+..+.++|.+++|+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 69999977665 4566678899999998
No 230
>PRK09739 hypothetical protein; Provisional
Probab=61.53 E-value=20 Score=31.69 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=24.7
Q ss_pred CCccEEEEEcC-CCccC-HH-HHHHHHHHHHhCCCEEEEEeC
Q 011848 4 QDHVHVAILPL-PAVGH-VN-SMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 4 ~~~~~il~~~~-~~~GH-~~-p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|+||||+++.. |-.+- .. -.-.+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 45788877755 43322 22 234456777778999998764
No 231
>PRK10490 sensor protein KdpD; Provisional
Probab=61.24 E-value=35 Score=37.98 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
+.||.+=..|+-|-.+-||.-|.+|+++|++|.+.--+..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 5799999999999999999999999999999988776543
No 232
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=61.08 E-value=19 Score=30.76 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHH----HH-h-CCceEEEec
Q 011848 93 LNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAA----RE-V-GVSIIYFRT 140 (476)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A----~~-l-giP~v~~~~ 140 (476)
+.....+.+.+++++. +||+||+.........++ +. + ++|.+.+.+
T Consensus 73 ~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 73 LSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3334455778888886 999999997664333121 22 3 477776644
No 233
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=60.81 E-value=68 Score=23.95 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCcHHHH
Q 011848 23 MLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLLK 102 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (476)
++.+++.|.+.|++| ++|. ...+.+.+. | +.+..+......+ .+.+.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~-G-----------i~~~~~~~ki~~~-------------------~~~i~ 48 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA-G-----------LPVKTLHPKVHGG-------------------ILAIL 48 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC-C-----------CcceeccCCCCCC-------------------CHHHH
Confidence 468999999999998 3554 445555543 2 4332111000000 01245
Q ss_pred HHHHcCCCCceEEEecCCc---------ccHHHHHHHhCCceEE
Q 011848 103 EMVSDSKSPVNCIITDGYM---------SRAIDAAREVGVSIIY 137 (476)
Q Consensus 103 ~ll~~~~~~~D~Ii~D~~~---------~~~~~~A~~lgiP~v~ 137 (476)
++++. .++|+||..... .....+|...+||+++
T Consensus 49 ~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 49 DLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred HHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 55555 499999975431 1455668888999863
No 234
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=60.20 E-value=22 Score=31.43 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=40.2
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
..||++.+.++-.|-....-++..|..+|.+|++++..-..+.+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 45999999999999999999999999999999999876655555444
No 235
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=60.17 E-value=1.7e+02 Score=28.33 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCceee-eccCH---HHHhCcCCCCccccc--cChhHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEec-cccC
Q 011848 343 ERGCIA-GWVPQ---EEVLAHSAVGGFLTH--CGWNSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIK-DLCD 415 (476)
Q Consensus 343 ~nv~~~-~~vp~---~~ll~~~~~~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~-~~~~ 415 (476)
+|+.+. +++|. .++|..|+++.|.|. =|.|++.-.++.|+|+++-- +=+.+-... | .|+-+... ++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~l~-~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQDLK-E-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHHHH-h-CCCeEEeccccCC
Confidence 477654 78884 558899999666654 59999999999999998642 333333333 4 48877666 7999
Q ss_pred HHHHHHHHHHHHh
Q 011848 416 RNIVEKAVNDLMV 428 (476)
Q Consensus 416 ~~~l~~ai~~~l~ 428 (476)
...|+++=+++.+
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887765
No 236
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=60.15 E-value=67 Score=28.94 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=68.9
Q ss_pred ccEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCcc----------chhhHhhcccccccccccCCCeeEEEcCC
Q 011848 6 HVHVAILPLP--AVGHVNSMLNLAELLGHAGIKITFLNTEH----------YYDRVIRHSSDAFSRYMQIPGFQFKTLTD 73 (476)
Q Consensus 6 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (476)
|||.+|++.= .-|-..-.-+|+++|+++|++|...=+-. ....+.+..+...+ +..++.+.+..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~----~~~~~py~f~~ 76 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLS----YELINPYRFKE 76 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhcCCCcc----cccccceecCC
Confidence 4566666663 55999999999999999999999874311 11122222220000 00122222211
Q ss_pred CCCCCCCCCCCChHHHHHHHHhh--CcHHHHHHHHcCCCCceEEEecCCcc---------cHHHHHHHhCCceEEEecch
Q 011848 74 GLPRDHPRTPDKFPELVDSLNCA--TPPLLKEMVSDSKSPVNCIITDGYMS---------RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~D~Ii~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 142 (476)
...+ ..-...... -.+.+..-+..+..+.|+||++.... ...+++..+++|+|.+...-
T Consensus 77 P~sP----------hlAa~~eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~ 146 (223)
T COG0132 77 PLSP----------HLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIK 146 (223)
T ss_pred CCCc----------HHHHhhcCCcccHHHHHHHHHhhhcccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCC
Confidence 1111 111111111 12223333333324889999876533 46788999999999998875
Q ss_pred hhHHH
Q 011848 143 ACAFW 147 (476)
Q Consensus 143 ~~~~~ 147 (476)
....+
T Consensus 147 LGtIN 151 (223)
T COG0132 147 LGTIN 151 (223)
T ss_pred ccHHH
Confidence 44433
No 237
>PRK12342 hypothetical protein; Provisional
Probab=60.08 E-value=16 Score=33.62 Aligned_cols=40 Identities=5% Similarity=-0.009 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCCceEEEecCCcc------cHHHHHHHhCCceEEEecc
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (476)
.+...+++. +||+|++..-+. -+..+|+.||+|++++...
T Consensus 100 ~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 355566665 799999876554 4899999999999997654
No 238
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=59.67 E-value=16 Score=33.78 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCCceEEEecCCcc------cHHHHHHHhCCceEEEecc
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (476)
..+...+++. .||+|++..-+. -+..+|+.||+|++++...
T Consensus 102 ~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 3355566665 799999865543 5889999999999997654
No 239
>PRK09620 hypothetical protein; Provisional
Probab=59.49 E-value=23 Score=32.14 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNS------------MLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.||++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4788777776554333 578999999999999999864
No 240
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=59.25 E-value=98 Score=27.38 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAG--IKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~ 42 (476)
||||++++.+..+- +.+|.+++.+.+ ++|.++.+
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs 36 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVIS 36 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEe
Confidence 68999999987433 346666677664 77776543
No 241
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=59.09 E-value=25 Score=31.63 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
-+++...|+.|-..-.+.++...+++|+.|.+++.+...+.+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 455666678999898899988888889999999998776655544
No 242
>PRK07206 hypothetical protein; Provisional
Probab=58.78 E-value=35 Score=34.03 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=23.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+|+++-.... ...+++++.++|+++.+++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 6777765433 3468999999999998888643
No 243
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=58.65 E-value=27 Score=37.85 Aligned_cols=111 Identities=13% Similarity=0.037 Sum_probs=65.8
Q ss_pred eeeccCHHH---HhCcCCCCccccc---cCh-hHHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHHH
Q 011848 347 IAGWVPQEE---VLAHSAVGGFLTH---CGW-NSTLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNIV 419 (476)
Q Consensus 347 ~~~~vp~~~---ll~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~l 419 (476)
+.+++++.+ ++..+++ |+.- -|+ .++.||+++|+|-..+|..++--.-+.-+ .-|+.+ ...+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv-~P~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLV-NPNDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEE-CCCCHHHH
Confidence 346788654 6678887 5543 354 47889999977633333322211111122 225555 34679999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Q 011848 420 EKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKMM 469 (476)
Q Consensus 420 ~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~~~ 469 (476)
+++|.++|+...++-+++.+++.+.++. -+...-++++++.+...
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 9999999983114455555555555433 44566778888777665
No 244
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=58.58 E-value=46 Score=33.70 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=62.7
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChH
Q 011848 9 VAIL-PLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (476)
Q Consensus 9 il~~-~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (476)
|+|. |....|-..-...|++.|+++|++|..+-+... .+. +.+. ..-.+.+..+...
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d--~~D-------------~~~~--~~~~g~~~~~ld~----- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPD--YID-------------PMFH--TQATGRPSRNLDS----- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCC--CCC-------------HHHH--HHHhCCchhhCCc-----
Confidence 4455 334578899999999999999999999865311 000 0000 0000111111000
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCceEEEecCC-------c-----ccHHHHHHHhCCceEEEecchh
Q 011848 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGY-------M-----SRAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~-------~-----~~~~~~A~~lgiP~v~~~~~~~ 143 (476)
++ ...+.+++.+.++..+.|++|++.. . .....+|+.++.|++.+.....
T Consensus 60 -~~-----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 60 -FF-----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred -cc-----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 00 0233445555544347899997654 1 2477999999999999987653
No 245
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=58.56 E-value=17 Score=27.60 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCcHHHH
Q 011848 23 MLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLLK 102 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (476)
++.+|+.|.+.|+++ ++++...+.+.+. | +.+..+-+....... ..+.. .+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~-G-----------i~~~~v~~~~~~~~~-~~g~~-------------~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH-G-----------IEVTEVVNKIGEGES-PDGRV-------------QIM 53 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT-T-------------EEECCEEHSTG-G-GTHCH-------------HHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc-C-----------CCceeeeeecccCcc-CCchh-------------HHH
Confidence 578999999999765 4444556666654 2 443333211111000 00000 566
Q ss_pred HHHHcCCCCceEEEecCCccc---------HHHHHHHhCCceEE
Q 011848 103 EMVSDSKSPVNCIITDGYMSR---------AIDAAREVGVSIIY 137 (476)
Q Consensus 103 ~ll~~~~~~~D~Ii~D~~~~~---------~~~~A~~lgiP~v~ 137 (476)
++++. .+.|+||....... -..+|...+||+++
T Consensus 54 ~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 54 DLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 66776 49999997765442 25578888999863
No 246
>PRK05920 aromatic acid decarboxylase; Validated
Probab=58.48 E-value=15 Score=32.56 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
++||++.-.|+.+= +=.+.+.++|.+.||+|.++.++.....+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 35888877776644 6889999999999999999999775444443
No 247
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.92 E-value=20 Score=29.98 Aligned_cols=46 Identities=9% Similarity=0.090 Sum_probs=34.3
Q ss_pred HHHHHHHcC-----CCCceEEEecCCcc----------cHHHHHHHhCCceEEEecchhhH
Q 011848 100 LLKEMVSDS-----KSPVNCIITDGYMS----------RAIDAAREVGVSIIYFRTISACA 145 (476)
Q Consensus 100 ~~~~ll~~~-----~~~~D~Ii~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~~ 145 (476)
.+++++..+ .+.||+|++..-+- -+..+|+++|||++-.+.+..+.
T Consensus 108 nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 108 NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 346666666 58999999865432 57889999999999887765544
No 248
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=57.42 E-value=48 Score=33.59 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
+++.--|+.|-..-++.++..++++|+.|.+++.+...+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 455666899999999999999999999999999877655443
No 249
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=57.34 E-value=12 Score=31.86 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|+||.|+-.+.+| ..+|+.|.++||+|++...
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 6799999988776 5789999999999998863
No 250
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=57.09 E-value=14 Score=34.04 Aligned_cols=38 Identities=29% Similarity=0.588 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCceEEE--ecCCcc----cHHHHHHHhCCceEEE
Q 011848 99 PLLKEMVSDSKSPVNCII--TDGYMS----RAIDAAREVGVSIIYF 138 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii--~D~~~~----~~~~~A~~lgiP~v~~ 138 (476)
..+.+++++- ++++|| +.+|.. .+..+|+.+|||++.+
T Consensus 56 ~~l~~~l~~~--~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 56 EGLAEFLREN--GIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHhC--CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 4456667764 899988 333322 5778899999999997
No 251
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=56.93 E-value=69 Score=32.70 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEE
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIY 137 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~ 137 (476)
.+.+.+++. +||++|.. .....+|+++|||++-
T Consensus 384 e~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 345556665 99999997 4577999999999984
No 252
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=56.80 E-value=89 Score=31.41 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
..+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 3456777775 9999999965 579999999999876
No 253
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=56.71 E-value=14 Score=36.52 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=60.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEe-CccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHH
Q 011848 12 LPLPAVGHVNSMLNLAELLGHAGIKITFLN-TEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELV 90 (476)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (476)
-+..+.|-..-.+.|.++|++||++|-=+- .|++.+ -.|+..-.+.+..|.+. +
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYID------------------P~~H~~atG~~srNLD~------~- 61 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYID------------------PGYHTAATGRPSRNLDS------W- 61 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccC------------------chhhhHhhCCccCCCch------h-
Confidence 345678999999999999999999996543 334322 11221111222222111 1
Q ss_pred HHHHhhCcHHHHHHHHcCCCCceEEEec-------C-----CcccHHHHHHHhCCceEEEecchhhHHHH
Q 011848 91 DSLNCATPPLLKEMVSDSKSPVNCIITD-------G-----YMSRAIDAAREVGVSIIYFRTISACAFWS 148 (476)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~D~Ii~D-------~-----~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 148 (476)
++ ..+.++.++.+-....|+.|.+ . -..+...+|+.+|+|+|.+..+.....+.
T Consensus 62 --mm--~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~ 127 (451)
T COG1797 62 --MM--GEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSV 127 (451)
T ss_pred --hc--CHHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHH
Confidence 00 1122333333322344444322 2 23468999999999999998876554443
No 254
>PRK09165 replicative DNA helicase; Provisional
Probab=56.66 E-value=47 Score=34.10 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=35.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHA---------------GIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r---------------GH~Vt~~~~~~~~~~~~~~ 52 (476)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+-..+.+...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 5677778999999999999888754 8899999987766655443
No 255
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=56.45 E-value=22 Score=33.67 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+|.|..-|+-|-..-...||..|++.|++|.++-...
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 6677766899999999999999999999999996543
No 256
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.10 E-value=27 Score=28.59 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=38.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
.+|++.+.++-+|-.----++..|...|++|..+......+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999875555544443
No 257
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=55.86 E-value=79 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=19.5
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 10 AILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
++.|+|-- -..-+-.+...+.++|++|++++-
T Consensus 2 vi~aHpDD-e~l~~gg~i~~~~~~g~~v~vv~~ 33 (128)
T PF02585_consen 2 VIAAHPDD-EELGCGGTIAKLAEAGHRVVVVTL 33 (128)
T ss_dssp EEESSTTH-HHHHHHHHHHHHHHTT-EEEEEEC
T ss_pred EEEECCCc-hHHhhHHHHHHHHhcCCeEEEEEe
Confidence 34444433 233455566788899999988874
No 258
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=55.77 E-value=13 Score=35.91 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||||+|+-.|..| ..+|..|+++||+|+++....
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 5699999888887 457889999999999998643
No 259
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=55.66 E-value=36 Score=33.42 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (476)
+++.--|+.|-..-++.++..++++|..|.+++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45555679999999999999999999999999987655443
No 260
>PRK05636 replicative DNA helicase; Provisional
Probab=55.61 E-value=19 Score=36.90 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+-....+...
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHH
Confidence 46677789999999999998876 458999999987665544433
No 261
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.56 E-value=1.4e+02 Score=25.80 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE---eCccc---hhhHhhcccccccccccCCCeeEEEcCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFL---NTEHY---YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDH 79 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
+--|.+++.++.|-..-.+.+|-..+.+|+.|.++ -+... ...+.+ . ++.+.....++....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-----------~-~~~~~~~g~g~~~~~ 72 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-----------H-GVEFQVMGTGFTWET 72 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-----------c-CcEEEECCCCCeecC
Confidence 34688899999999999999999999999999665 22211 112221 1 477777765443221
Q ss_pred CCCCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc
Q 011848 80 PRTPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~ 122 (476)
.+..... ......-...++.+.. .++|+||.|-+..
T Consensus 73 ----~~~~~~~-~~~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 73 ----QNREADT-AIAKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred ----CCcHHHH-HHHHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 1111111 1122222333444444 5999999997653
No 262
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=55.46 E-value=22 Score=33.64 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=34.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|||+|+-=|+.|-..-...||..|+++|++|.++-...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 57999999999999999999999999999999987644
No 263
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=55.05 E-value=17 Score=31.80 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
||++.-.|+.|=..-.+.+.++|.++|++|+++.++..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 78888888888777778999999999999999998663
No 264
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=54.90 E-value=20 Score=33.26 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=30.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.|.+.-=|+-|-..-...||..|+++|++|.++=..
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 445554578999999999999999999999999543
No 265
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=54.61 E-value=23 Score=31.33 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=30.7
Q ss_pred ccEEEEEcCCCccCHHHHHH-HHHHHHh-CCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLN-LAELLGH-AGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~-La~~L~~-rGH~Vt~~~~~ 43 (476)
||||+++-+..+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 46999999988999998776 5666666 89999988754
No 266
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.38 E-value=2.1e+02 Score=27.54 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=29.8
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|+||.++-.|++| -+||+.|++.||+|++.....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 5699999999998 579999999999999998643
No 267
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=54.32 E-value=17 Score=34.45 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|||+|+-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 489999888877 5678889999999999986
No 268
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=54.29 E-value=39 Score=33.99 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
.+.+.+++. +||+||.+.. ...+|+++|+|++.+
T Consensus 362 el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 345566665 9999999965 578899999999875
No 269
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=54.20 E-value=38 Score=31.36 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=25.4
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecchh
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (476)
..||+|| .|+..- .+..=|.++|||+|.+.-+..
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 5799877 565433 577779999999999876643
No 270
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=54.07 E-value=20 Score=31.71 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||++++.-.|-.| ..||..|+..||+|++.+...
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 5677777666554 678999999999999997644
No 271
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=53.99 E-value=17 Score=32.13 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|+=|++.-+|+.|-....-.||++|.+++|+|.-.+..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 34566677799999999999999999999999877763
No 272
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=53.68 E-value=18 Score=34.46 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.9
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||++|+.. |+-|-..-..++|-.++++|++|.+++...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 47777776 788999999999999999999999999865
No 273
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=53.55 E-value=19 Score=33.81 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=34.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
+++|+|+-.|..|.. +|+.|+++||.|.++..+.........
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 569999999999875 789999999999999987766555444
No 274
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=52.73 E-value=59 Score=30.06 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+++.-.|+.|-..-.+.++...+++|..|.|++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 456666799999999999999988999999999874
No 275
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.69 E-value=17 Score=34.44 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
|||+|+-.|+.| ..+|..|++.||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 589999888876 467888999999999998744334443
No 276
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=52.39 E-value=1.8e+02 Score=26.32 Aligned_cols=44 Identities=16% Similarity=-0.050 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
-+++.-.|+.|-..-.+.++.+-+++|..+.+++.+...+.+.+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 45677778999999999988877789999999998876665544
No 277
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=52.36 E-value=24 Score=32.74 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=32.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|+|.+..=|+-|-..-...||..|+++|++|.++=-.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5788887789999999999999999999999998543
No 278
>PRK00784 cobyric acid synthase; Provisional
Probab=52.19 E-value=67 Score=32.96 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=28.8
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
+|++... ...|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4666644 4579999999999999999999988765
No 279
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=51.91 E-value=71 Score=28.06 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=63.2
Q ss_pred CccEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCC
Q 011848 5 DHVHVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTP 83 (476)
Q Consensus 5 ~~~~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (476)
.|.++-|++.| -.|-.--+|.-++....+|-.|.++++.-.-. . +...+.-..|...+....
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R-~---------------~~~~V~Sr~G~~~~A~~i- 64 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR-Y---------------GVGKVSSRIGLSSEAVVI- 64 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccc-c---------------ccceeeeccCCcccceec-
Confidence 36677777776 55899999999999999999999999854211 0 011111111222211000
Q ss_pred CChHHHHHHHHhhCcHHHHHHHHcC--CCCceEEEecCCcc-------cHHHHHHHhCCceEEE
Q 011848 84 DKFPELVDSLNCATPPLLKEMVSDS--KSPVNCIITDGYMS-------RAIDAAREVGVSIIYF 138 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~D~Ii~D~~~~-------~~~~~A~~lgiP~v~~ 138 (476)
. ....+.+.+... ....|+|+.|-..+ -...+|..+|||++..
T Consensus 65 ~------------~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 65 P------------SDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred C------------ChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 0 112223333332 11368999998766 3567788999999996
No 280
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=51.77 E-value=2.1e+02 Score=30.78 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=29.6
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.|++.+. +..|-..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 5666644 4579999999999999999999999876
No 281
>PRK11823 DNA repair protein RadA; Provisional
Probab=51.32 E-value=48 Score=33.55 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=34.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (476)
+++.-.|+.|-..-++.++..++++|+.|.+++.+...+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45666679999999999999999999999999987766544
No 282
>PRK10037 cell division protein; Provisional
Probab=50.90 E-value=26 Score=32.14 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=32.3
Q ss_pred ccEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|+.|.|+.. |+-|-..-...||..|+++|++|.++=...
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 335666666 788999999999999999999999996543
No 283
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=50.76 E-value=26 Score=32.53 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|+|.++-=|+-|...-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5788887789999999999999999999999988653
No 284
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=50.71 E-value=37 Score=30.41 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=39.8
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
..||++.+.++-.|-....-++..|..+|++|++++..-..+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 46999999999999999999999999999999999965545544443
No 285
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=50.44 E-value=40 Score=32.39 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=56.8
Q ss_pred EEEEEcCCCcc---C--HHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC
Q 011848 8 HVAILPLPAVG---H--VNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 8 ~il~~~~~~~G---H--~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
-|+|.|+.+.| + .--+..|++.|.++|.+|.+++++...+...+... .. ...
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~----------~~---------~~~---- 232 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA----------LL---------PGE---- 232 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH----------hC---------Ccc----
Confidence 45555544333 1 22588999999989999999888654433322100 00 000
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecc
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (476)
............+..+++ +.|++|+. ..+...+|..+|+|+|.++..
T Consensus 233 ------~~~l~g~~sL~el~ali~----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 233 ------LRNLAGETSLDEAVDLIA----LAKAVVTN--DSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred ------cccCCCCCCHHHHHHHHH----hCCEEEee--CCHHHHHHHHcCCCEEEEECC
Confidence 000000111233444555 67899965 246889999999999987553
No 286
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=50.41 E-value=25 Score=33.73 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=30.3
Q ss_pred CcHHHHHHHHcCCCCceEEEecCCccc----------HHHHHHHhCCceEEEe
Q 011848 97 TPPLLKEMVSDSKSPVNCIITDGYMSR----------AIDAAREVGVSIIYFR 139 (476)
Q Consensus 97 ~~~~~~~ll~~~~~~~D~Ii~D~~~~~----------~~~~A~~lgiP~v~~~ 139 (476)
....+.++++++ +||++|+.+.+.. +..+.++++||.++-.
T Consensus 68 a~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 68 ALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 445567777776 9999999987762 2235678999999753
No 287
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=50.35 E-value=22 Score=35.60 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.++||.|+-.|-.| +.+|..|+++||+|+.+..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 446799999766555 5789999999999998875
No 288
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=50.23 E-value=1.2e+02 Score=23.71 Aligned_cols=85 Identities=13% Similarity=0.213 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCc
Q 011848 19 HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATP 98 (476)
Q Consensus 19 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (476)
+=.-++.+++.|.+.|+++ ++|. ...+.+.+. | +.+..+... ..+ ..
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT~-gTa~~L~~~-G-----------i~~~~v~~~-~~~------------------g~ 56 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FATG-GTSRVLADA-G-----------IPVRAVSKR-HED------------------GE 56 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EECc-HHHHHHHHc-C-----------CceEEEEec-CCC------------------CC
Confidence 4456889999999999998 3444 445666553 2 433333210 000 22
Q ss_pred HHHHHHHHc-CCCCceEEEe--cCCc--------ccHHHHHHHhCCceEEE
Q 011848 99 PLLKEMVSD-SKSPVNCIIT--DGYM--------SRAIDAAREVGVSIIYF 138 (476)
Q Consensus 99 ~~~~~ll~~-~~~~~D~Ii~--D~~~--------~~~~~~A~~lgiP~v~~ 138 (476)
+++.+++++ - ++|+||. +... .....+|-..+||+++.
T Consensus 57 ~~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 57 PTVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred cHHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 445556655 4 9999986 3222 13455688899999984
No 289
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=49.94 E-value=1.2e+02 Score=30.20 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
.+.+.++.. +||++|.... ...+|+++|||++..
T Consensus 347 e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 455666776 9999999844 568999999999854
No 290
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=49.82 E-value=56 Score=32.87 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~~ 52 (476)
+++...|+.|-..-.+.++..++. .|+.|.|++.+...+.+...
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHH
Confidence 466677899999999999999876 59999999988766655443
No 291
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.99 E-value=1.2e+02 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
..+.+++++. +||++|... ....+|.++|||++.+
T Consensus 385 ~e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3456667775 999999873 3578888999999875
No 292
>PRK07236 hypothetical protein; Provisional
Probab=48.47 E-value=32 Score=33.93 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|-+|.+++|+|+-.|- --+.+|..|+++|++|+++--
T Consensus 1 ~~~~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTHMSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEec
Confidence 6677788999998773 358899999999999999974
No 293
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=48.42 E-value=21 Score=34.23 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
||||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5799999888776 46788899999999998763
No 294
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=48.38 E-value=2.9e+02 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=31.4
Q ss_pred ccEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
..|++.++. |+-|-..-...||..|+..|++|.++-...
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 447766666 466778889999999999999999997643
No 295
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.30 E-value=24 Score=35.80 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=33.4
Q ss_pred ccEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNS------------MLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
-.||++...|++=.+.| -.+||+++..||++||+++++.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 45899988888877776 4789999999999999999865
No 296
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.20 E-value=16 Score=36.86 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHH---HHHHHHHHHHhHhHHHHHHHHHHHH
Q 011848 373 STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRN---IVEKAVNDLMVERKEEFMESADRMA 442 (476)
Q Consensus 373 s~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~---~l~~ai~~~l~~~~~~~~~~a~~l~ 442 (476)
++.||+++|.|+++.=..+ -+--+ +..-.|..++. +.+ .+++++.++..| +.++.+..+=+
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~--p~l~~~~~~~G 444 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRD--PELWARMGKNG 444 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 6899999999999874322 22333 23334666653 444 699999999998 88876654433
No 297
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=48.03 E-value=1.4e+02 Score=25.30 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCCceEEEecCCcc---cHHHHHHHhCCceEEEecc
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~---~~~~~A~~lgiP~v~~~~~ 141 (476)
..+.+++++. +||+|+...-.. .+..+|.++|.|++.-...
T Consensus 73 ~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 73 PALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 4455666665 899999765544 6899999999999986554
No 298
>PLN02470 acetolactate synthase
Probab=47.74 E-value=58 Score=34.32 Aligned_cols=92 Identities=14% Similarity=0.072 Sum_probs=50.9
Q ss_pred EecccccCCHH--HHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeecc-CHHHH-------hC
Q 011848 289 SFGSIAVMSRD--QLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWV-PQEEV-------LA 358 (476)
Q Consensus 289 s~Gs~~~~~~~--~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v-p~~~l-------l~ 358 (476)
+|||....+.. ..+.+++.|++.|.+.|+-+.+... ..+-+.+. ..+++.++.-- .+.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~------~~l~dal~--~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS------MEIHQALT--RSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc------HHHHHHHh--ccCCceEEEeccHHHHHHHHHHHHHH
Confidence 45665533322 2467788888888888887753211 11222221 11233332111 11111 12
Q ss_pred cCCCCccccccChh------HHHHHHHhCCceeccc
Q 011848 359 HSAVGGFLTHCGWN------STLESIVAGMPMICWP 388 (476)
Q Consensus 359 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 388 (476)
...++++++|.|-| .+++|...++|+|++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 23455688888844 7899999999999995
No 299
>PRK06756 flavodoxin; Provisional
Probab=47.67 E-value=34 Score=28.37 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCccCHHHH-HHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSM-LNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~-l~La~~L~~rGH~Vt~~~~ 42 (476)
||||+++-...+||.--+ -.|++.|.++|++|.+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 568888888899999874 5578899999999987754
No 300
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=47.55 E-value=1.4e+02 Score=29.41 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=31.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCc-cchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAG-IKITFLNTE-HYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG-H~Vt~~~~~-~~~~~~~~~ 52 (476)
|++|+++-.|..|+ .+|..|+++| ++|++++-. ...+++...
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 67899988876664 5799999999 999999864 334455444
No 301
>PRK06849 hypothetical protein; Provisional
Probab=47.42 E-value=34 Score=33.80 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+++|++..... .-.+.+++.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 56888875433 368999999999999999998754
No 302
>PRK07773 replicative DNA helicase; Validated
Probab=47.40 E-value=58 Score=36.23 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=36.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCccchhhHhhc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHA-GIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~ 52 (476)
|++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+...
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 6777789999999999999998765 8899999987766655544
No 303
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=47.37 E-value=1.7e+02 Score=25.58 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc-----hhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY-----YDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
=|.+++..+-|-....+-+|-.-.-+|.+|.++-.-.. ........ ...+.|+..++++..+..
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---------~~~v~~~~~~~g~tw~~~-- 98 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---------GLGVEFHGMGEGFTWETQ-- 98 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---------ccceeEEecCCceeCCCc--
Confidence 47788888888877766666555556666766642111 11121111 124888888877665532
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS 122 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~ 122 (476)
....-. ......-+..++++.+ .++|+||.|-++.
T Consensus 99 --~~~~d~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 99 --DREADI-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred --CcHHHH-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 111111 1122222334555555 4999999998764
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.15 E-value=1e+02 Score=26.11 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=33.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccch
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (476)
+++.-.++.|-......++..|+++|..|.++..+.++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777789999999999999999999999999976554
No 305
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=46.85 E-value=60 Score=29.34 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecchh
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (476)
..||+|| .|+..- .+..=|.++|||+|.+.-+..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 5799877 565433 677779999999999876643
No 306
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=46.46 E-value=44 Score=26.53 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCccCHHHHH---HHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNSML---NLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l---~La~~L~~rGH~Vt~~~~~~ 44 (476)
||||++++....|-...++ .|.++-.++||++.+=+-..
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4789999998888888776 56677777899999776433
No 307
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=46.35 E-value=39 Score=29.80 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.0
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+|++.++. ++-|-..-...||..|+++|++|.++-...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 56555544 577888899999999999999999987643
No 308
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.10 E-value=26 Score=33.72 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
+|||.|+-.|++| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6799999888887 56889999999999999873
No 309
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=45.72 E-value=35 Score=33.85 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
+++.||++.-.|+. ..+=...+.+.|.++|++|.++.++.....+.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 44568988888776 55678899999999999999999876444443
No 310
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.25 E-value=78 Score=28.69 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=34.6
Q ss_pred HHHHhhCcHHHHHHHHcCCCCceEEEecCCcc---cHHHHHHHhCCceEEE
Q 011848 91 DSLNCATPPLLKEMVSDSKSPVNCIITDGYMS---RAIDAAREVGVSIIYF 138 (476)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~---~~~~~A~~lgiP~v~~ 138 (476)
+..+..-.+.++.+++++ .+-++.+.|.-+. -+..+|...|||++.=
T Consensus 130 Gs~~tsn~~aM~~~m~~L-k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 130 GSRFTSNEDAMEKLMEAL-KERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred hhhhcCcHHHHHHHHHHH-HHCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 333344456677777777 5778999998777 3677899999999974
No 311
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.08 E-value=27 Score=30.32 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=30.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
||++.-.|+.|-.. ...|.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 45555556655544 4889999999999999999977544443
No 312
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.91 E-value=2.1e+02 Score=31.30 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=31.5
Q ss_pred ccEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
..||+.++. |+-|-..-...||..|++.|++|.++-...
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~ 585 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADG 585 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 346655555 688999999999999999999999997644
No 313
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=44.64 E-value=1.5e+02 Score=23.24 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCc
Q 011848 19 HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATP 98 (476)
Q Consensus 19 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (476)
+-.-++.+++.|.+.|.+|. .| +...+.+.+. + +.+..+......+. .. .
T Consensus 11 dk~~~~~~a~~l~~~G~~i~-aT-~gTa~~L~~~-g-----------i~~~~v~~~~~~~~---~~-------------~ 60 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY-AT-EGTADFLLEN-G-----------IPVTPVAWPSEEPQ---ND-------------K 60 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE-Ec-cHHHHHHHHc-C-----------CCceEeeeccCCCC---CC-------------c
Confidence 45568899999999999983 44 4556666644 2 33222211000000 00 1
Q ss_pred HHHHHHHHcCCCCceEEEecCC---------cccHHHHHHHhCCceEE
Q 011848 99 PLLKEMVSDSKSPVNCIITDGY---------MSRAIDAAREVGVSIIY 137 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~---------~~~~~~~A~~lgiP~v~ 137 (476)
+.+.+++++ .++|+||.-+- .......|-.+|||+++
T Consensus 61 ~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 456666766 49999997432 23567789999999974
No 314
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=44.43 E-value=1.4e+02 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=27.5
Q ss_pred ccEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILP-LPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
++||+++- .|..|. .+|..|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 46899997 788875 5799999999999999863
No 315
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=44.39 E-value=62 Score=29.62 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCC-CCCCChHHHHHHHHhhCcHHH
Q 011848 23 MLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHP-RTPDKFPELVDSLNCATPPLL 101 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 101 (476)
+-.+++.+.+.|-+|.+.++..+...+..... ...+-+..+|.......- +..-.....+..--....+.=
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~--------~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n 188 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADA--------HSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDN 188 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcc--------cceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHH
Confidence 34566666667877888887777777766532 112333334421110000 000000111111122234455
Q ss_pred HHHHHcCCCCceEEEecCCc-----ccHHHHHHHhCCceEEEe
Q 011848 102 KEMVSDSKSPVNCIITDGYM-----SRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 102 ~~ll~~~~~~~D~Ii~D~~~-----~~~~~~A~~lgiP~v~~~ 139 (476)
+.+++++ +.|+||+-.-- ..=..+|..+|||+|.+-
T Consensus 189 ~all~q~--~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 189 KALLEQY--RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHh--CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 7888888 99999975322 234678999999999973
No 316
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.50 E-value=73 Score=30.72 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=58.6
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCC
Q 011848 7 VHVAILPLPAVG-----HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPR 81 (476)
Q Consensus 7 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (476)
..|+|.|.-+.| -..-+..|++.|.++|.+|.++.++...+...+... .+ ....
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~----------~~---------~~~~-- 234 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK----------GL---------PNAV-- 234 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH----------hc---------CCcc--
Confidence 367777772332 233589999999999999999988743333222211 00 0000
Q ss_pred CCCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEecc
Q 011848 82 TPDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (476)
. ........++..+++ ..|++|+. ..+...+|..+|.|+|.+...
T Consensus 235 ------~---l~~k~sL~e~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 235 ------I---LAGKTSLEELAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ------c---cCCCCCHHHHHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 0 000011223344444 67888854 346899999999999998655
No 317
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.41 E-value=52 Score=26.06 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
++..+.++-.|-.....++..|.++|++|.++......+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHH
Confidence 567778888899999999999999999999997654444443
No 318
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=43.30 E-value=21 Score=32.80 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 20 VNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 20 ~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
-.-.-.|+++|+++||+|++++|..
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3446788999999999999999844
No 319
>PLN02939 transferase, transferring glycosyl groups
Probab=43.17 E-value=45 Score=36.87 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=30.1
Q ss_pred CccEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 5 DHVHVAILPLP------AVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 5 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+.|||+|++.- +.|=-.-.-.|.++|++.||+|.+++|..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46899998752 22333446688999999999999999844
No 320
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.99 E-value=50 Score=29.86 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=35.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
-+++.-.++.|-..-...++...+++|..|.|++.+...+.+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 45666778999999999999888889999999998776655444
No 321
>PRK13768 GTPase; Provisional
Probab=42.96 E-value=79 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
.+++...++.|-..-...++..|+++|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4555556788999999999999999999999998644
No 322
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=42.88 E-value=69 Score=28.62 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=23.5
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecch
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (476)
..||+|| .|+-.. .+..=|..+|||+|.+.-+.
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn 176 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTN 176 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTT
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCC
Confidence 5699987 444332 56777999999999987664
No 323
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=42.58 E-value=1.1e+02 Score=30.89 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=54.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCCh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKF 86 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (476)
.|+++...+ ...+.+++.|.+-|-+|..+......+..... ..+.. ...++
T Consensus 312 krvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~-----------------------~~~~~-~~~D~ 362 (432)
T TIGR01285 312 KKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL-----------------------PVETV-VIGDL 362 (432)
T ss_pred CEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC-----------------------CcCcE-EeCCH
Confidence 367666533 46688888888889998877765432211110 00000 00111
Q ss_pred HHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 87 PELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
..+.+++++. ++|+||.+.. ...+|+++|||++.+
T Consensus 363 ------------~~l~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ------------EDLEDLACAA--GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred ------------HHHHHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 2346666765 9999998864 588999999999875
No 324
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=42.57 E-value=11 Score=36.93 Aligned_cols=133 Identities=21% Similarity=0.273 Sum_probs=63.2
Q ss_pred eccccCcCccCCCccccCCC----CcccccchhhhhhhcCCCCc---------eEEEEecccccCCHHHHHHHHHHHhhC
Q 011848 245 IGPLNAHLKVRIPEKTYSSS----SLWKIDRSCMAWLDKQPKQS---------VIYVSFGSIAVMSRDQLIEFYYGLVHS 311 (476)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~~---------~V~vs~Gs~~~~~~~~~~~~~~al~~~ 311 (476)
.||+.+-..+..|++.+.+- +..+.+..+.+||+.. .+. +-|+.+|... .+-.++-+.++.-
T Consensus 358 ~GPFRW~aLSgdpeDi~~tD~~~~el~p~n~~l~~Wid~A-~e~i~fqGlpARIcw~g~geR~----r~gLafNemVr~G 432 (561)
T COG2987 358 IGPFRWVALSGDPEDIYKTDAAVKELFPDNKHLHRWIDMA-RERIAFQGLPARICWLGLGERA----RIGLAFNEMVRNG 432 (561)
T ss_pred cCCeeEEEecCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HhcCccccCcceeeecccchHH----HHHHHHHHHHhcC
Confidence 46776654444444433321 2345677888999842 233 3344433322 1111122222222
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCce-eeeccCHHHHhCc---CCCCccccccChhHHHHHHHhCCcee
Q 011848 312 KKSFLWVIRPDLISGKDGENQIPEELLEATKERGC-IAGWVPQEEVLAH---SAVGGFLTHCGWNSTLESIVAGMPMI 385 (476)
Q Consensus 312 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~vp~~~ll~~---~~~~~~I~HgG~gs~~eal~~GvP~l 385 (476)
..+.=++++.++++.++ ..-|..-.+..++.-- +.+|-=+.++|.. ++. ..+||||.-++-.+++.|.=+|
T Consensus 433 elkaPvvigRDHlD~gs--vaSP~RETe~mkDGsdavsDwp~lnallntA~Gatw-vslHhGGGvgmG~s~h~G~viV 507 (561)
T COG2987 433 ELKAPVVIGRDHLDSGS--VASPNRETEAMKDGSDAVSDWPLLNALLNTASGATW-VSLHHGGGVGMGFSQHAGMVIV 507 (561)
T ss_pred CcCCCeEeccccccccC--ccCCcchhhcccCccchhhhhHHHHHHhhhccCCcE-EEEecCCcccccccccCceEEE
Confidence 22333455555555211 1223222222333333 4477667777743 333 4789999866666666554433
No 325
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=42.53 E-value=2e+02 Score=24.06 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=69.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCC
Q 011848 284 SVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVG 363 (476)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~ 363 (476)
|.|-|-+||.. +....+++...|+..+..+-+.+- +....|+.+.+ ++...+- ..+++
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~--------saHR~p~~l~~----------~~~~~~~-~~~~v- 58 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVA--------SAHRTPERLLE----------FVKEYEA-RGADV- 58 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE----------TTTSHHHHHH----------HHHHTTT-TTESE-
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEE--------eccCCHHHHHH----------HHHHhcc-CCCEE-
Confidence 34667777764 667778888899888866655442 12234443321 1111000 12333
Q ss_pred ccccccChh----HHHHHHHhCCceeccccccchhh----hhHhhhcceeeeEEec---cccCHHHHHHHHHHHHhHhHH
Q 011848 364 GFLTHCGWN----STLESIVAGMPMICWPSFADQQI----NSRFVGEVWKLGLDIK---DLCDRNIVEKAVNDLMVERKE 432 (476)
Q Consensus 364 ~~I~HgG~g----s~~eal~~GvP~l~~P~~~DQ~~----na~r~~e~~G~g~~~~---~~~~~~~l~~ai~~~l~~~~~ 432 (476)
||.=.|.. ++.-++. -.|++.+|....+.. ....++-=.|+++..- .-.++..++-.|..+ .| +
T Consensus 59 -iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d--~ 133 (150)
T PF00731_consen 59 -IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KD--P 133 (150)
T ss_dssp -EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T---H
T ss_pred -EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CC--H
Confidence 77766643 3333333 799999998766442 1222322225554332 233444444333322 26 8
Q ss_pred HHHHHHHHHHHHHHHH
Q 011848 433 EFMESADRMANLAKKS 448 (476)
Q Consensus 433 ~~~~~a~~l~~~~~~~ 448 (476)
+++++.+..+++.++.
T Consensus 134 ~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 134 ELREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 8999999988887763
No 326
>PRK13236 nitrogenase reductase; Reviewed
Probab=42.28 E-value=53 Score=31.11 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=34.5
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|-...|..|.|.-=|+-|-..-.+.||..|+++|++|.++-...
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 33344545566555899999999999999999999999996543
No 327
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.24 E-value=26 Score=35.46 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|||+|+-.|-- -|+-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEeccC
Confidence 47887766644 4889999999999999997544
No 328
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=41.60 E-value=4.5e+02 Score=28.85 Aligned_cols=180 Identities=11% Similarity=0.060 Sum_probs=97.8
Q ss_pred CceEEEEecccccCC--HHHHHHHHHHHhh------CCCcEEEEEcCCCCCCCCCCCCCchH---HHH--HhcCCceee-
Q 011848 283 QSVIYVSFGSIAVMS--RDQLIEFYYGLVH------SKKSFLWVIRPDLISGKDGENQIPEE---LLE--ATKERGCIA- 348 (476)
Q Consensus 283 ~~~V~vs~Gs~~~~~--~~~~~~~~~al~~------~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~--~~~~nv~~~- 348 (476)
..++.+.|-+..... .+++-..++-+.+ .+..||+..+.+..+..|. .+... +.+ +.++++.+.
T Consensus 476 pd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK--~iIk~i~~~a~~p~~~~kVvfle 553 (778)
T cd04299 476 PNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGK--ELIQEIVEFSRRPEFRGRIVFLE 553 (778)
T ss_pred CCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHH--HHHHHHHHHHhCcCCCCcEEEEc
Confidence 345677777766333 3333333222322 3566777665442220000 01111 111 234566665
Q ss_pred ecc-CH-HHHhCcCCCCccccc-----cChhHHHHHHHhCCceecccc--ccchh--hhhHhhhcceeee-EEec--ccc
Q 011848 349 GWV-PQ-EEVLAHSAVGGFLTH-----CGWNSTLESIVAGMPMICWPS--FADQQ--INSRFVGEVWKLG-LDIK--DLC 414 (476)
Q Consensus 349 ~~v-p~-~~ll~~~~~~~~I~H-----gG~gs~~eal~~GvP~l~~P~--~~DQ~--~na~r~~e~~G~g-~~~~--~~~ 414 (476)
+|= .. ..|.+.+|+=+..+. ||.+.+.-++ +|++.+.+-. +.+-+ .|+-.+. . +-. .... +..
T Consensus 554 ~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~-NG~LnlSvlDGww~E~~~g~nGwaig-~-~~~~~~~~~~d~~ 630 (778)
T cd04299 554 DYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAAL-NGGLNLSVLDGWWDEGYDGENGWAIG-D-GDEYEDDEYQDAE 630 (778)
T ss_pred CCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHH-cCCeeeecccCccccccCCCCceEeC-C-CccccChhhcchh
Confidence 552 22 347788998777788 8886666554 9999999887 33322 2222221 1 000 0011 357
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHhc
Q 011848 415 DRNIVEKAVNDLMVERKEEFMES-----ADRMANLAKKSVNK---GGSSYCNLDRLVNDIKMMS 470 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~-----a~~l~~~~~~~~~~---~g~~~~~~~~~i~~l~~~~ 470 (476)
+++.|.+.+.+..- |.|.++ -.++-+.+++++.. .=+..+-+.+.++.+..+.
T Consensus 631 da~~Ly~~Le~~i~---p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 631 EAEALYDLLENEVI---PLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred hHHHHHHHHHHHHH---HHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHH
Confidence 78888888865444 667664 44566666666555 5567788888888876653
No 329
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=41.55 E-value=42 Score=28.91 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=28.6
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHh-CCCEEEEEeCccchh
Q 011848 8 HVAILPLPAVGHVNS-MLNLAELLGH-AGIKITFLNTEHYYD 47 (476)
Q Consensus 8 ~il~~~~~~~GH~~p-~l~La~~L~~-rGH~Vt~~~~~~~~~ 47 (476)
||+..-.++ ||... .+.+.++|++ +||+|.++.++...+
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 344444554 77765 8899999985 599999999876443
No 330
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=41.47 E-value=99 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=34.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCccchhh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYYDR 48 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~ 48 (476)
-|+++..++.|-..-...||..|. ++|+.|.+++...++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 566777789999999999999997 58999999998776543
No 331
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=41.41 E-value=29 Score=35.07 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=25.6
Q ss_pred HHHHHcCCCCceEEEecCCcc--cHHHHHHHhCCceEEEecc
Q 011848 102 KEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 102 ~~ll~~~~~~~D~Ii~D~~~~--~~~~~A~~lgiP~v~~~~~ 141 (476)
+.++++++.+||+|+...... .|..+++++|||...+.++
T Consensus 392 ~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 392 REILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp HHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred HHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 344444445999999664332 6889999999999998665
No 332
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=41.40 E-value=65 Score=31.23 Aligned_cols=102 Identities=10% Similarity=0.080 Sum_probs=56.4
Q ss_pred EEEEEcCCCcc---CH--HHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCC
Q 011848 8 HVAILPLPAVG---HV--NSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 8 ~il~~~~~~~G---H~--~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
-|+|.|..+.| ++ .-+..|++.|.++|++|.+++++...+...+... .. +.....
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~----------~~-----~~~~~~----- 241 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA----------AL-----NTEQQA----- 241 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH----------hc-----cccccc-----
Confidence 46666643222 22 2478999999988999999887654433322110 00 000000
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEec
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~ 140 (476)
. .....-.....++..+++ +.|++|+. ..+...+|..+|+|+|.++.
T Consensus 242 --~---~~~l~g~~sL~el~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 242 --W---CRNLAGETQLEQAVILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred --c---eeeccCCCCHHHHHHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 0 000000111233344454 67899865 34689999999999998855
No 333
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=41.37 E-value=1.6e+02 Score=30.17 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=37.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
-+++.-.|+.|-..-.+.++.+.+++|..|.+++.+...+.+...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 456777789999999999999999999999999988876655443
No 334
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=41.20 E-value=52 Score=31.12 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCccC----HHHHHHHHHHHHhCCCEEEEEeC
Q 011848 5 DHVHVAILPLPAVGH----VNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 5 ~~~~il~~~~~~~GH----~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
+|+||+++..|.... +...-.++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 467999999875543 34577889999999999988864
No 335
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=41.08 E-value=49 Score=30.91 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=33.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|-+|.|+-=|+-|-..-...||..|+++|++|.++-...
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 447888866899999999999999999999999997543
No 336
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=40.93 E-value=48 Score=30.67 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+|+|+.=|+.|-..-...||..|+++|++|.++=...
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 6778766899999999999999999999999997644
No 337
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=40.70 E-value=49 Score=29.44 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=30.4
Q ss_pred CcHHHHHHHHcCCCCceEEEecCCcc-------cHHHHHHHhCCceEEEe
Q 011848 97 TPPLLKEMVSDSKSPVNCIITDGYMS-------RAIDAAREVGVSIIYFR 139 (476)
Q Consensus 97 ~~~~~~~ll~~~~~~~D~Ii~D~~~~-------~~~~~A~~lgiP~v~~~ 139 (476)
-.+.+.++++++..++|+|++|.+.. .|..++-.+++|+|-+.
T Consensus 75 E~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 75 ELPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp THHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred hHHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 34667777788766899999998755 57778888999999873
No 338
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=40.67 E-value=1.7e+02 Score=32.87 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEe
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~ 139 (476)
.+.+++++. +||++|.... ...+|+++|||++-..
T Consensus 380 el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 345666666 9999999644 5779999999999655
No 339
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.60 E-value=38 Score=32.23 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.|||.|+-.|..| .++|+.|.++||+|++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 4699999888776 47899999999999988754
No 340
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=40.41 E-value=43 Score=33.04 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=30.5
Q ss_pred CcHHHHHHHHcCCCCceEEEecCCccc----------HHHHHHHhCCceEEEec
Q 011848 97 TPPLLKEMVSDSKSPVNCIITDGYMSR----------AIDAAREVGVSIIYFRT 140 (476)
Q Consensus 97 ~~~~~~~ll~~~~~~~D~Ii~D~~~~~----------~~~~A~~lgiP~v~~~~ 140 (476)
....+.++++++ +||++|+.+.+.. +..+.++++||.++-..
T Consensus 64 a~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My 115 (431)
T TIGR01918 64 AVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMY 115 (431)
T ss_pred HHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEec
Confidence 345567777776 9999999987762 22346779999998643
No 341
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=40.38 E-value=41 Score=29.10 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=36.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
..++|+-.++.|-..=..++++++.++|+.|.|++.+...+.+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 368888889999999999999999999999999998776555543
No 342
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=40.19 E-value=44 Score=33.03 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=30.5
Q ss_pred CcHHHHHHHHcCCCCceEEEecCCccc----------HHHHHHHhCCceEEEec
Q 011848 97 TPPLLKEMVSDSKSPVNCIITDGYMSR----------AIDAAREVGVSIIYFRT 140 (476)
Q Consensus 97 ~~~~~~~ll~~~~~~~D~Ii~D~~~~~----------~~~~A~~lgiP~v~~~~ 140 (476)
....+.++++++ +||++|+.+.+.. +..+.++++||.++-..
T Consensus 64 a~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy 115 (431)
T TIGR01917 64 AKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMY 115 (431)
T ss_pred HHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEec
Confidence 345567777776 9999999987762 22346779999998643
No 343
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.67 E-value=49 Score=29.48 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.8
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
|++|..-|+++++..+.|-+- -+||+++.+.|+.|.-..
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG--~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIG--YALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccCCCeEEEeecCCcchh--HHHHHHHHhCCeEEEEEc
Confidence 566655566666665555442 378999999999986544
No 344
>CHL00067 rps2 ribosomal protein S2
Probab=39.60 E-value=90 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=25.6
Q ss_pred CCceEEE-ecCCcc-cHHHHHHHhCCceEEEecchh
Q 011848 110 SPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 110 ~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (476)
..||+|| .|+-.- .+..=|.++|||+|.+.-+..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 5788877 555433 577779999999999877643
No 345
>PRK12827 short chain dehydrogenase; Provisional
Probab=39.58 E-value=62 Score=29.18 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
|..+..++|++. . +.|.+ -..||+.|+++||+|+++.
T Consensus 1 ~~~~~~~~ilIt-G-asg~i--G~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 1 MASLDSRRVLIT-G-GSGGL--GRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCcCCCEEEEE-C-CCChH--HHHHHHHHHHCCCeEEEEc
Confidence 455444455543 3 33444 3688999999999998865
No 346
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=39.54 E-value=47 Score=30.23 Aligned_cols=42 Identities=7% Similarity=-0.015 Sum_probs=31.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCccchhhH
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHA--GIKITFLNTEHYYDRV 49 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~ 49 (476)
||++.-.|+.+=+.=.+.|.+.|.++ ||+|.++-++...+.+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 45555555555557899999999999 9999999987633333
No 347
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=39.18 E-value=58 Score=29.81 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=29.5
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.|++... |+.|-..-.-+||..|++.|+.|..+=-
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5555444 7899999999999999999999999864
No 348
>PLN02240 UDP-glucose 4-epimerase
Probab=39.18 E-value=50 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 4 QDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.+.+|++. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 3 ~~~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 334466553 455655 45678999999999999863
No 349
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.13 E-value=77 Score=25.88 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=36.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (476)
+.||++.+.+.-+|-.----++..|...|++|.-.......+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 56999999999999999999999999999999998864333333
No 350
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=38.72 E-value=2.4e+02 Score=29.18 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=27.4
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEE
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~ 138 (476)
.+++++... +||++|.+.. +..+|+.+|||.+.+
T Consensus 428 ~l~~~l~~~--~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTE--PVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhc--CCCEEEECch---HHHHHHHcCCCEEEe
Confidence 356666664 9999998854 688999999999876
No 351
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=38.69 E-value=43 Score=29.21 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=36.2
Q ss_pred ccEEEEEcC---CC-ccCHHH-HHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcC
Q 011848 6 HVHVAILPL---PA-VGHVNS-MLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLT 72 (476)
Q Consensus 6 ~~~il~~~~---~~-~GH~~p-~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (476)
|-||+++-. |+ +|=+-- .-.|+..|+++||+|++.+.......-... .-++++..++
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~----------y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE----------YNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc----------cCCeEEEEeC
Confidence 347777654 33 455443 456788888899999999986544322222 4457777765
No 352
>PRK10818 cell division inhibitor MinD; Provisional
Probab=38.63 E-value=50 Score=30.63 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.2
Q ss_pred ccEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILP--LPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|+||+-+. -|+.|-..-...||..|+++|++|.++-...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34553333 3788999999999999999999999997654
No 353
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=38.62 E-value=69 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=29.8
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 10 AILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.++.++..--++|..-++...+.+|++|+++.+-
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 4566678889999999999999999999999873
No 354
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=38.52 E-value=52 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
..|.|+-=|+-|-..-.+.||.+|+++|++|.++-..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3677775689999999999999999999999999543
No 355
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.31 E-value=38 Score=31.89 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
++.||.++-.|..| ..+|..|+++||+|+++...
T Consensus 2 ~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 2 DIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 34589999888887 56888999999999999863
No 356
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=38.22 E-value=30 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 21 NSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
--.+=|+..|.++||+|++.+++.....++
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 346778999999999999999987544443
No 357
>PRK05993 short chain dehydrogenase; Provisional
Probab=37.75 E-value=61 Score=30.10 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.|+|.++++.++. .--..+++.|+++|++|.++..
T Consensus 2 ~~~k~vlItGasg---giG~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 2 DMKRSILITGCSS---GIGAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCCEEEEeCCCc---HHHHHHHHHHHHCCCEEEEEEC
Confidence 3556677776543 2236789999999999988764
No 358
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=37.73 E-value=46 Score=31.25 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=27.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
+||.|+-.+.+| .++|+.|.++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 488899888887 57899999999999999864
No 359
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=37.50 E-value=49 Score=30.45 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=30.5
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHH-hCCCEEEEEeCccc
Q 011848 8 HVAILPL-PAVGHVNSMLNLAELLG-HAGIKITFLNTEHY 45 (476)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~ 45 (476)
.|.|+.. |+.|-..-.+.||..|+ .+||+|.++=....
T Consensus 4 iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 4 IIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 3444444 89999999999999999 66799999986553
No 360
>PRK08265 short chain dehydrogenase; Provisional
Probab=37.38 E-value=64 Score=29.62 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=27.9
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|..++. |.++++.++.| --.++++.|+++|++|++..-
T Consensus 1 m~~~~~-k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 1 MIGLAG-KVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CCCCCC-CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 544433 67777776553 567899999999999988864
No 361
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=37.33 E-value=42 Score=23.63 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCcc
Q 011848 23 MLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
-+..|..|+++|++|+++-...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 4678999999999999997544
No 362
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.32 E-value=1.1e+02 Score=28.04 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCC-CEEEEEeCccchhhHhh-cccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCcHH
Q 011848 23 MLNLAELLGHAG-IKITFLNTEHYYDRVIR-HSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPL 100 (476)
Q Consensus 23 ~l~La~~L~~rG-H~Vt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (476)
+-..++.|.+.+ .+|.+.++......+.. ... ...+-+..+|..-. . ..-.....+...-....+.
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~--------~~r~~~RvLp~~~~--~--~g~~~~~iia~~GPfs~e~ 185 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLP--------GERLFARVLPTPES--A--LGFPPKNIIAMQGPFSKEL 185 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccC--------CCEEEEEECCCccc--c--CCCChhhEEEEeCCCCHHH
Confidence 456677777777 88888888777777754 211 11233334442111 1 0001111222222223344
Q ss_pred HHHHHHcCCCCceEEEecCC----cccHHHHHHHhCCceEEEe
Q 011848 101 LKEMVSDSKSPVNCIITDGY----MSRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 101 ~~~ll~~~~~~~D~Ii~D~~----~~~~~~~A~~lgiP~v~~~ 139 (476)
=+.+++++ +.|+||+=.- +..=..+|..+|||++++-
T Consensus 186 n~al~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 186 NRALFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 57888888 9999996432 2234678999999999973
No 363
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.12 E-value=91 Score=23.72 Aligned_cols=39 Identities=5% Similarity=0.118 Sum_probs=27.8
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
++.||+++|..+.+--.-.-.+=+.+.++|.++.+-..+
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 456999999987764444456666677789988877654
No 364
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.08 E-value=2.7e+02 Score=23.82 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCccch-hhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCcHHH
Q 011848 23 MLNLAELLGHAGIKITFLNTEHYY-DRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATPPLL 101 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (476)
+..|.+...++|..|.++++..-. +.+.... ... +|++++....+++- .....+.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l---~~~---yP~l~ivg~~~g~f-----------------~~~~~~~i 93 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANL---RRR---YPGLRIVGYHHGYF-----------------DEEEEEAI 93 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH---HHH---CCCeEEEEecCCCC-----------------ChhhHHHH
Confidence 445566666689999999875422 2111111 111 77888876543221 11112333
Q ss_pred HHHHHcCCCCceEEEecCCcc----cHHHHHHHhCCceEE
Q 011848 102 KEMVSDSKSPVNCIITDGYMS----RAIDAAREVGVSIIY 137 (476)
Q Consensus 102 ~~ll~~~~~~~D~Ii~D~~~~----~~~~~A~~lgiP~v~ 137 (476)
.+.+++. +||+|++-.-++ |.....+.++.+++.
T Consensus 94 ~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 94 INRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAGVII 131 (172)
T ss_pred HHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 4445554 999999987777 777888888888333
No 365
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=37.05 E-value=52 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=30.2
Q ss_pred cEEEEEcCCCc---cCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 7 VHVAILPLPAV---GHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 7 ~~il~~~~~~~---GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
|||+|+.-|-. -+.+..++|.++.++|||+|.++.+...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 47877776422 3455788999999999999999998653
No 366
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=36.86 E-value=82 Score=25.00 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||++..-++.|-......|++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5788889999999999999999999999999988754
No 367
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=36.85 E-value=44 Score=28.93 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
||++.-.|+.| .+-...+.+.|.++|++|.++.++...+
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 67777777664 5566799999999999999999866433
No 368
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=4.1e+02 Score=25.85 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=76.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhh---------CCC-cEEEEEcCCCCCCCCCCCCCchHHHHHhc----CCcee
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVH---------SKK-SFLWVIRPDLISGKDGENQIPEELLEATK----ERGCI 347 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~---------~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~nv~~ 347 (476)
.++.++||.-|-. +.+.+..++.|+.. .+. +++..++++ | .+.+.+..... .++.+
T Consensus 253 ~~pallvsSTswT--pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK-----G---PlkE~Y~~~I~~~~~~~v~~ 322 (444)
T KOG2941|consen 253 ERPALLVSSTSWT--PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK-----G---PLKEKYSQEIHEKNLQHVQV 322 (444)
T ss_pred CCCeEEEecCCCC--CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC-----C---chhHHHHHHHHHhcccceee
Confidence 5777888765543 33345556666651 122 344444322 2 35555543222 45555
Q ss_pred e-eccC---HHHHhCcCCCCccccccChh-----HHHHHHHhCCceeccccccchhhhhHhhhcceeeeEEeccccCHHH
Q 011848 348 A-GWVP---QEEVLAHSAVGGFLTHCGWN-----STLESIVAGMPMICWPSFADQQINSRFVGEVWKLGLDIKDLCDRNI 418 (476)
Q Consensus 348 ~-~~vp---~~~ll~~~~~~~~I~HgG~g-----s~~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~~~ 418 (476)
. .|+. ...+|+.+|++...|-.-.| -+..-.-+|+|++.+-+-- -..+++.---|... -++++
T Consensus 323 ~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc-----l~ELVkh~eNGlvF---~Ds~e 394 (444)
T KOG2941|consen 323 CTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC-----LDELVKHGENGLVF---EDSEE 394 (444)
T ss_pred eecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh-----HHHHHhcCCCceEe---ccHHH
Confidence 4 8864 66799999998888877666 3555567788887775432 11223332235555 37888
Q ss_pred HHHHHHHHHh
Q 011848 419 VEKAVNDLMV 428 (476)
Q Consensus 419 l~~ai~~~l~ 428 (476)
|.+.+.-+++
T Consensus 395 La~ql~~lf~ 404 (444)
T KOG2941|consen 395 LAEQLQMLFK 404 (444)
T ss_pred HHHHHHHHHh
Confidence 8888887776
No 369
>PRK06703 flavodoxin; Provisional
Probab=36.62 E-value=60 Score=27.00 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCccCHHHH-HHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSM-LNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~-l~La~~L~~rGH~Vt~~~~~ 43 (476)
||||+++-...+|+..-+ -.|++.|...|++|.+....
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 567777777788998864 46688888899999987653
No 370
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=36.52 E-value=2.2e+02 Score=26.49 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=54.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChH
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFP 87 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (476)
=|+++-.|+.|-..-...|.+.|.+.|.+|.++.-... . +... ....... .
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~-~-~~~~--------------------------~y~~~~~-E 53 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL-G-IDRN--------------------------DYADSKK-E 53 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH-H--TTS--------------------------SS--GGG-H
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc-c-cchh--------------------------hhhchhh-h
Confidence 47778889999999999999999999999999985331 1 1110 0000111 1
Q ss_pred HHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc------cHHHHHHHhCCceEEEecch
Q 011848 88 ELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~------~~~~~A~~lgiP~v~~~~~~ 142 (476)
..........+...+. +-++||.|.... -..-+|+..+.++..++...
T Consensus 54 ---k~~R~~l~s~v~r~ls----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~ 107 (270)
T PF08433_consen 54 ---KEARGSLKSAVERALS----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDC 107 (270)
T ss_dssp ---HHHHHHHHHHHHHHHT----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE-
T ss_pred ---HHHHHHHHHHHHHhhc----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 1122222234444444 337888887654 46779999999999776543
No 371
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=36.39 E-value=85 Score=30.55 Aligned_cols=95 Identities=12% Similarity=0.186 Sum_probs=51.4
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCC-Cch-HHHH-HhcC-Cce----e--------
Q 011848 284 SVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQ-IPE-ELLE-ATKE-RGC----I-------- 347 (476)
Q Consensus 284 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~-nv~----~-------- 347 (476)
.+++.+.||-.-..+. .++++.+++.+++++|+...... +.. ++. ++.- ..+. .+. +
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~-----e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGI-----EKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFL 75 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcc-----ccccCcccCCcEEEEeccCcCCCchHHHHHHHHH
Confidence 4666777777633333 34567777778899998754421 111 111 1100 0000 000 0
Q ss_pred --eeccCHHHHhC--cCCCCccccccChhH---HHHHHHhCCceecc
Q 011848 348 --AGWVPQEEVLA--HSAVGGFLTHCGWNS---TLESIVAGMPMICW 387 (476)
Q Consensus 348 --~~~vp~~~ll~--~~~~~~~I~HgG~gs---~~eal~~GvP~l~~ 387 (476)
..++--..++. .+++ +|++||.-| +..|...|+|.++.
T Consensus 76 ~~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 76 VMKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 00001112344 4565 999999997 89999999999763
No 372
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=36.28 E-value=77 Score=28.46 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=26.9
Q ss_pred cEEEEEcCC----CccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHVAILPLP----AVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~il~~~~~----~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
.||+++..+ ......=++.--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 478777651 11244456667789999999999999754
No 373
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.12 E-value=67 Score=28.79 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=61.1
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHh
Q 011848 16 AVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNC 95 (476)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (476)
+..|+...+.+...++.||=.+.|+++-...+...+....... ++..-. ....+ ...+....++.+.+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~------gy~~~~---~w~~G---~lTN~~~l~g~~~~ 157 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAG------GYSHNR---KWLGG---LLTNARELFGALVR 157 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhc------Cceeee---eeccc---eeecchhhcccccc
Confidence 4467788888999999999999999986555544443221111 111110 00011 00011112222221
Q ss_pred h--CcHHHHHHHHcCCCCceEEE-ecCCcc-cHHHHHHHhCCceEEEecchh
Q 011848 96 A--TPPLLKEMVSDSKSPVNCII-TDGYMS-RAIDAAREVGVSIIYFRTISA 143 (476)
Q Consensus 96 ~--~~~~~~~ll~~~~~~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (476)
. ..+...-++.. ..+|+|| .|.... .++.=|.+++||.|.+.-+.+
T Consensus 158 ~~~~~pd~~~f~~t--~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 158 KFLSLPDALCFLPT--LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred cccCCCcceeeccc--CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 1 11222223333 3678877 465554 677889999999998866543
No 374
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=35.99 E-value=66 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.2
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.+++ .|.++++.++.| --..+++.|+++|++|+++.-
T Consensus 1 m~~~~-~k~vlVTGas~g---IG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 1 MSQDA-KGTVIITGASSG---VGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCCCC-CCEEEEEcCCCh---HHHHHHHHHHHCCCEEEEEEC
Confidence 54443 366777766542 346789999999999988864
No 375
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.95 E-value=1.1e+02 Score=30.60 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=38.2
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
++..|+++-.=+.|-...+-.||+-|.++|+.|.+++...++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 3567888888899999999999999999999999999877664
No 376
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=35.87 E-value=3.6e+02 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.329 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
++||+++..++...-. .+.++|.++|.+|.++...
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeec
Confidence 4599999998876443 5578999999999988764
No 377
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=35.56 E-value=33 Score=30.56 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCceEEEecCCcc-------cHHHHHHHhCCceEEE
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMS-------RAIDAAREVGVSIIYF 138 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~-------~~~~~A~~lgiP~v~~ 138 (476)
+.+.+.++++...||+|+.|..-. -|..+...+++|+|-+
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 446666777645799999998765 3556666777888876
No 378
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=35.52 E-value=52 Score=30.69 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=29.4
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHh--CCCEEEEEeCc
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGH--AGIKITFLNTE 43 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~--rGH~Vt~~~~~ 43 (476)
|.+|+++||.++-.|..|. .+++.|.+ .|++|+.+...
T Consensus 1 ~~~m~~irIGIIG~G~IG~-----~~a~~L~~~~~~~el~aV~dr 40 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGK-----AIAQALDRGLPGLTLSAVAVR 40 (271)
T ss_pred CCCCCeeEEEEECccHHHH-----HHHHHHHhcCCCeEEEEEECC
Confidence 7889999999999887774 35677775 38898877654
No 379
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=35.37 E-value=84 Score=27.18 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|+||++--.|+.|=.+ .+.|-+.|.+.|+++.++.+......+..+
T Consensus 2 ~~riivgisGASG~iy-gvrlLe~L~~~~~e~hlviS~~a~~~~~~E 47 (191)
T COG0163 2 MKRIIVGISGASGAIY-GVRLLEVLRELGVETHLVISKAAKKTLKYE 47 (191)
T ss_pred CcEEEEEEeccccHHH-HHHHHHHHHhcCceEEEEEcHHHHHHHHHH
Confidence 5588888888888666 578899999999999999987655544444
No 380
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=35.34 E-value=3.2e+02 Score=27.93 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 15 PAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 15 ~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
...|-..-...|++.|+++|.+|..+-+.
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 44688889999999999999999988764
No 381
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.22 E-value=2.7e+02 Score=27.71 Aligned_cols=136 Identities=10% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCC-ceeeec-------cCH
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKER-GCIAGW-------VPQ 353 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~-------vp~ 353 (476)
++.+++.-.||.... ....+++.|.+.++.+-+++.... . ..+...-.+...++ +...-| +.|
T Consensus 6 ~k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A-----~-~fi~~~~l~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 6 GKRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAA-----K-KFVTPLTFQALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CCeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhH-----H-HHHhHHHHHHhhCCceEccccccccCCCcch
Confidence 466777777777521 344566777777877666554321 0 01111112223333 322112 234
Q ss_pred HHHhCcCCCCccccccChhHHHH-------------HHHhCCceeccccccc-------hhhhhHhhhcceeeeEEec--
Q 011848 354 EEVLAHSAVGGFLTHCGWNSTLE-------------SIVAGMPMICWPSFAD-------QQINSRFVGEVWKLGLDIK-- 411 (476)
Q Consensus 354 ~~ll~~~~~~~~I~HgG~gs~~e-------------al~~GvP~l~~P~~~D-------Q~~na~r~~e~~G~g~~~~-- 411 (476)
-++...+++ .+|-=+=.||+.- ++.+++|++++|.... -..|-.++. +.|+-+.-+
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~ii~P~~ 154 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLR-SRGVEIIGPAS 154 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHH-HCCCEEECCCC
Confidence 455555665 5666666665543 3666999999995432 234777884 567765543
Q ss_pred -----------cccCHHHHHHHHHHHHh
Q 011848 412 -----------DLCDRNIVEKAVNDLMV 428 (476)
Q Consensus 412 -----------~~~~~~~l~~ai~~~l~ 428 (476)
+-.+.++|...+.+.+.
T Consensus 155 g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 23566888888877765
No 382
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.11 E-value=68 Score=31.39 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=36.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
.=|+|+-.-+.|-...+-.||.-+.++|..+-+++...++.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 45678888899999999999999999999999999988765
No 383
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.07 E-value=1.9e+02 Score=23.57 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCC--CCCCCCC-ChHHHHHHHHhhC
Q 011848 21 NSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPR--DHPRTPD-KFPELVDSLNCAT 97 (476)
Q Consensus 21 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 97 (476)
..+-.+.++..++|.+|........-+.+.+. .|......-. |-+. ....... .....-.......
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~----------HPeW~~~~~~-G~~~~~~~~~~~~~~~~c~ns~Y~e~~ 112 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFSWDEDAAER----------HPEWFVRDAD-GRPMRGERFGYPGWYTCCLNSPYREFL 112 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeeecChHHHHh----------CCceeeECCC-CCCcCCCCcCCCCceecCCCccHHHHH
Confidence 45677888899999999888876644455444 4444443222 2110 0000000 0000111222455
Q ss_pred cHHHHHHHHcCCCCceEEEecC
Q 011848 98 PPLLKEMVSDSKSPVNCIITDG 119 (476)
Q Consensus 98 ~~~~~~ll~~~~~~~D~Ii~D~ 119 (476)
.++++++++.. ++|.|+.|.
T Consensus 113 ~~~i~Ei~~~y--~~DGiF~D~ 132 (132)
T PF14871_consen 113 LEQIREILDRY--DVDGIFFDI 132 (132)
T ss_pred HHHHHHHHHcC--CCCEEEecC
Confidence 67889999987 999999873
No 384
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=34.87 E-value=1.8e+02 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCEEEEEeCcc
Q 011848 24 LNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 24 l~La~~L~~rGH~Vt~~~~~~ 44 (476)
-+|...|.+.||+|++++-..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 467889999999999999533
No 385
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=34.73 E-value=98 Score=28.03 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=33.0
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCccch
Q 011848 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEHYY 46 (476)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 46 (476)
=|.|+.. |+-|-..-.+.||.+|+++|-.|+++=...+.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3455555 79999999999999999999999999987654
No 386
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.59 E-value=59 Score=28.02 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=26.5
Q ss_pred cHHHHHHHHcCCCCceEEEecCCccc--HHHHHHHhCCceEEEe
Q 011848 98 PPLLKEMVSDSKSPVNCIITDGYMSR--AIDAAREVGVSIIYFR 139 (476)
Q Consensus 98 ~~~~~~ll~~~~~~~D~Ii~D~~~~~--~~~~A~~lgiP~v~~~ 139 (476)
...++.+++. +||+||....... ....-+..|||++.+.
T Consensus 59 ~~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 59 SLNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3455666664 9999998654332 4444578899998874
No 387
>PLN00016 RNA-binding protein; Provisional
Probab=34.58 E-value=46 Score=32.74 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
++||+++..-+.|+=+--..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 34787762222233333567889999999999999864
No 388
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=34.42 E-value=1.7e+02 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
||||++-.+++-| +||++|++.+..-.++..+.|
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN 34 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN 34 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC
Confidence 6999999999999 589999988766555555553
No 389
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=34.37 E-value=1.2e+02 Score=30.68 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
+|||+++-.+++.| +|+++|++.|++|..+-.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 46999998888877 578899988987777743
No 390
>PRK06835 DNA replication protein DnaC; Validated
Probab=34.23 E-value=63 Score=31.17 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=36.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
-.++|+-.++.|-..=..++|++|.++|+.|.+++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 35777777899999999999999999999999999876555443
No 391
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.23 E-value=2.2e+02 Score=22.03 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHHHHHhhCc
Q 011848 19 HVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVDSLNCATP 98 (476)
Q Consensus 19 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (476)
+-.-++.+++.|.+.|+++. .+ +...+.+.+. | +.+..+... . ...
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~-aT-~gT~~~l~~~-g-----------i~~~~v~~~-~-------------------~~~ 56 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV-AT-EGTAKYLQEA-G-----------IPVEVVNKV-S-------------------EGR 56 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE-Ec-hHHHHHHHHc-C-----------CeEEEEeec-C-------------------CCc
Confidence 55678899999999999983 44 4445666553 2 443333210 0 022
Q ss_pred HHHHHHHHcCCCCceEEEecCC-------cccHHHHHHHhCCceEEE
Q 011848 99 PLLKEMVSDSKSPVNCIITDGY-------MSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~-------~~~~~~~A~~lgiP~v~~ 138 (476)
+.+.+++++ .++|+||.-.- .......|-.+|||+++-
T Consensus 57 ~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 57 PNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred hhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 446666666 49999997432 235677799999999963
No 392
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=34.18 E-value=1.4e+02 Score=22.23 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCCCccEEEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 1 MEKQDHVHVAILPLPAVG----HVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~G----H~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|-+.+-.+|-+=|+.+-| +.+..-.|-..|++.||+|.+.-...
T Consensus 1 Mp~~a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d 48 (88)
T PF15092_consen 1 MPKNAYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIED 48 (88)
T ss_pred CCCccEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 344444455555655655 45678889999999999999998765
No 393
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=34.11 E-value=86 Score=28.27 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCE
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIK 36 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~ 36 (476)
|.=|+|+-.|..|--.....|.++|.++||.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 4468888999999999999999999999986
No 394
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=34.11 E-value=2.2e+02 Score=24.81 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 20 VNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 20 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
-.-.+.+|+.|.+.|.++. .|. ...+.+.+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~-GTAk~L~e~ 40 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STG-GTAKFLKEA 40 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecc-HHHHHHHHc
Confidence 3457899999999999984 443 446666655
No 395
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=34.11 E-value=3.6e+02 Score=27.17 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.9
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPLP-AVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
+|++.... ..|-..-.+.|++.|.++|.+|.-+-+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 56555554 669999999999999999999876653
No 396
>PRK12744 short chain dehydrogenase; Provisional
Probab=34.09 E-value=76 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=26.6
Q ss_pred CCCCCc-cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 1 MEKQDH-VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 1 m~~~~~-~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
|..|.+ .|.++++.++.| =-..+|+.|+++|++|.+++
T Consensus 1 ~~~~~l~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCCCCCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 554433 266777766554 56779999999999977665
No 397
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=33.91 E-value=62 Score=27.42 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=24.0
Q ss_pred ccEEEEEcCCC--ccCHHHHHHHHHHHHhCCCEEEE
Q 011848 6 HVHVAILPLPA--VGHVNSMLNLAELLGHAGIKITF 39 (476)
Q Consensus 6 ~~~il~~~~~~--~GH~~p~l~La~~L~~rGH~Vt~ 39 (476)
|.+|.++.... .-+..-...|++.|+++||.|..
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 45788887653 33344577888999999996665
No 398
>CHL00175 minD septum-site determining protein; Validated
Probab=33.89 E-value=78 Score=29.55 Aligned_cols=40 Identities=13% Similarity=0.347 Sum_probs=32.6
Q ss_pred CccEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 5 DHVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 5 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+|+||+.+.. |+-|-..-...||..|+++|++|.++-...
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3567766665 688999999999999999999999986543
No 399
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.85 E-value=1.1e+02 Score=29.65 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=25.8
Q ss_pred HHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEec
Q 011848 101 LKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 101 ~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~ 140 (476)
+..+++ +.|++|+. ..+...+|..+|+|+|.++.
T Consensus 256 l~ali~----~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 256 LGALID----HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHHHH----hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 444454 67899975 34689999999999998864
No 400
>PRK06180 short chain dehydrogenase; Provisional
Probab=33.66 E-value=76 Score=29.42 Aligned_cols=32 Identities=13% Similarity=-0.076 Sum_probs=23.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.++++.++. .--..|++.|+++||+|..+..
T Consensus 5 ~~vlVtGasg---giG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSS---GFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCC---hHHHHHHHHHHhCcCEEEEEeC
Confidence 5555555543 3467889999999999998875
No 401
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.64 E-value=78 Score=27.66 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCCceEEEecCC-cccHHHHHHHhCCceEEEecch
Q 011848 100 LLKEMVSDSKSPVNCIITDGY-MSRAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~-~~~~~~~A~~lgiP~v~~~~~~ 142 (476)
.+.+++++...+..++|...+ .+++..+|+.+|+|.|.++|+.
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 345666665111246665544 3478889999999999998763
No 402
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.48 E-value=57 Score=32.26 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=34.3
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
..||++...|+.|= +-.+.+.+.|.+.|++|.++.++...+.+.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 45888887776654 558999999999999999999877444443
No 403
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=33.19 E-value=77 Score=25.49 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=29.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
++++.+|..++-.-+..+++.|+++|+.|..+..+.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 36 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPG 36 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 367777777788889999999999999999886543
No 404
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=33.17 E-value=68 Score=29.84 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=31.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
..|.|+-=|+-|-..-...||.+|+++|++|.++-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~ 37 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGC 37 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEec
Confidence 366777557899999999999999999999999954
No 405
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=33.11 E-value=1.7e+02 Score=27.23 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=26.7
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCc
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAG-IKITFLNTE 43 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG-H~Vt~~~~~ 43 (476)
+..||+++-.|+.|- .+|+.|++.| .+++++-..
T Consensus 29 ~~s~VlVvG~GGVGs-----~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGS-----WAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHH-----HHHHHHHHcCCCEEEEEeCC
Confidence 346899998887764 5789999999 778888754
No 406
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=33.03 E-value=83 Score=31.37 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=30.9
Q ss_pred cEE-EEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHV-AILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~i-l~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
++| .|... |+.|-..-.+.||..|+.+|++|.++=...
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 354 44443 899999999999999999999999997644
No 407
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.85 E-value=75 Score=31.42 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=33.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhH
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRV 49 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 49 (476)
|++---|+-|--.=.|.++..|+++| .|.+++++.....+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 55556688899999999999999999 99999998765544
No 408
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.83 E-value=37 Score=29.88 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=25.0
Q ss_pred CceEEE-ecCCcc-cHHHHHHHhCCceEEEecch
Q 011848 111 PVNCII-TDGYMS-RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 111 ~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (476)
.||+|| .|+..- -+..=|.++|||+|.+.-+-
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 788776 666544 68888999999999987764
No 409
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=32.81 E-value=2.7e+02 Score=27.44 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=38.1
Q ss_pred cccccChhHHHHHHHhCCceec--cccccc------hhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH
Q 011848 365 FLTHCGWNSTLESIVAGMPMIC--WPSFAD------QQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 365 ~I~HgG~gs~~eal~~GvP~l~--~P~~~D------Q~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~ 429 (476)
+-|+ |..++..|+.+|.|+-. ++.++| =-.|+.+++..+-....+ .+.+++..+|.+++.|
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvv---V~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVV---VEDDEIAAAILRLFED 316 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEE---eccHHHHHHHHHHHHh
Confidence 4444 67788888888888632 223333 223555654333333333 6889999999999986
No 410
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=32.81 E-value=9.8 Score=20.58 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=14.1
Q ss_pred ChhHHHHHHHhCCceecc
Q 011848 370 GWNSTLESIVAGMPMICW 387 (476)
Q Consensus 370 G~gs~~eal~~GvP~l~~ 387 (476)
|.|++.-.++.|.|.++-
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 678999999999887753
No 411
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=32.81 E-value=3.2e+02 Score=28.09 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
|.++++...- -.-++.+|+.|.+.|.++. .| ....+.+.+.
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~lGfeI~-AT-~GTak~L~e~ 44 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVELGVEIL-ST-GGTAKLLAEA 44 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHHCCCEEE-Ec-chHHHHHHHC
Confidence 4466665554 4558899999999999984 44 4546666665
No 412
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.66 E-value=3.7e+02 Score=24.48 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=20.1
Q ss_pred CceEEEecCCccc----HHHHHHHhCCceEEEec
Q 011848 111 PVNCIITDGYMSR----AIDAAREVGVSIIYFRT 140 (476)
Q Consensus 111 ~~D~Ii~D~~~~~----~~~~A~~lgiP~v~~~~ 140 (476)
++|.||....... ....+...|||+|.+..
T Consensus 55 ~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 55 GVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred CCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 8999887544332 23445677999999743
No 413
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=32.66 E-value=59 Score=32.48 Aligned_cols=31 Identities=35% Similarity=0.525 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|||.|+-.|..| +.+|..|+++||+|+++..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 488888777766 6889999999999998865
No 414
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.18 E-value=1e+02 Score=23.36 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=25.1
Q ss_pred CceEEE--ecCCcc----cHHHHHHHhCCceEEEecchhhH
Q 011848 111 PVNCII--TDGYMS----RAIDAAREVGVSIIYFRTISACA 145 (476)
Q Consensus 111 ~~D~Ii--~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~ 145 (476)
++|+|| +|.... .+...|.+.++|++.....+...
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 677775 665544 56677889999999987665444
No 415
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=32.10 E-value=4.1e+02 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=31.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCccch
Q 011848 10 AILPLPAVGHVNSMLNLAELLG-HAGIKITFLNTEHYY 46 (476)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~ 46 (476)
+|.-.++.|-..-.-.|++.|. ++|+.|.++...++.
T Consensus 3 ~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 5666688899999999999998 689999999988766
No 416
>PRK04940 hypothetical protein; Provisional
Probab=32.04 E-value=89 Score=27.10 Aligned_cols=31 Identities=16% Similarity=0.016 Sum_probs=25.2
Q ss_pred CceEEEecCCc-ccHHHHHHHhCCceEEEecc
Q 011848 111 PVNCIITDGYM-SRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 111 ~~D~Ii~D~~~-~~~~~~A~~lgiP~v~~~~~ 141 (476)
++++||...+- +++..+|+++|+|.|.++|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46777766554 48999999999999999876
No 417
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.79 E-value=54 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
++.||.++-.|.+|. .+|..|+.+||+|+++....
T Consensus 4 ~~~~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 4 AIQRVGVVGAGQMGA-----GIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred CccEEEEEcccHHHH-----HHHHHHHhCCCEEEEEECCH
Confidence 355999998888875 67888999999999998643
No 418
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=31.71 E-value=3.4e+02 Score=23.50 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=29.8
Q ss_pred CCceeccccc----cch---hhhhHhhhcceeeeEEecc-------------ccCHHHHHHHHHHHHh
Q 011848 381 GMPMICWPSF----ADQ---QINSRFVGEVWKLGLDIKD-------------LCDRNIVEKAVNDLMV 428 (476)
Q Consensus 381 GvP~l~~P~~----~DQ---~~na~r~~e~~G~g~~~~~-------------~~~~~~l~~ai~~~l~ 428 (476)
++|++++|-. .+. ..|-.++. +.|+-+..+. -.+.++|.+.+.+.++
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~-~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLK-EDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHH-HCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999963 232 45788884 6677655441 3355666666665544
No 419
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.70 E-value=3.2e+02 Score=23.11 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=21.8
Q ss_pred CCccccccChh------HHHHHHHhCCceeccc
Q 011848 362 VGGFLTHCGWN------STLESIVAGMPMICWP 388 (476)
Q Consensus 362 ~~~~I~HgG~g------s~~eal~~GvP~l~~P 388 (476)
.+++++|+|-| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488887744 7889999999999996
No 420
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.66 E-value=3.5e+02 Score=23.62 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc-chhhHhh
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH-YYDRVIR 51 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~ 51 (476)
+.+.-.|+.|-..-.+.++..+.+.|..|.|++.+. ..+++.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 455566799999999999999999999999999975 3334333
No 421
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=31.66 E-value=61 Score=27.37 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.||+++-.|..| ...++.|.+.||+|+++.+.
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 478888766554 77899999999999999653
No 422
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=31.60 E-value=1e+02 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=22.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
+|+ ++. +.|.+ -..|++.|.++|++|+++..
T Consensus 8 ~il-ItG-asg~i--G~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 8 VAL-VTG-AARGI--GRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred EEE-EcC-CCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 444 443 34555 67889999999999988865
No 423
>PRK05246 glutathione synthetase; Provisional
Probab=31.59 E-value=70 Score=30.61 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCc---cCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAV---GHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~---GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+|||+|+.-|-. -..+...+|+++-++|||+|.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 368888876522 334567899999999999999999865
No 424
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=31.52 E-value=54 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=20.3
Q ss_pred hhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH
Q 011848 394 QINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 394 ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~ 429 (476)
.+.+..- +..|+|+.+ |+|++.++|.+++++
T Consensus 102 ~d~~~Fe-~~cGVGV~V----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 102 IDVAEFE-KACGVGVVV----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp --HHHHH-HTTTTT--------HHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHcCCCeEE----CHHHHHHHHHHHHHH
Confidence 3344444 678999998 999999999999984
No 425
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=31.44 E-value=81 Score=28.74 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
..++|+++.------..-+-.....|+++||+|++++-
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 35677555433333455677778888999999999984
No 426
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=31.43 E-value=1.3e+02 Score=29.01 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEec
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~ 140 (476)
.++..+++ +.|++|+. ..+...+|..+|+|+|.++.
T Consensus 252 ~el~ali~----~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 252 PQLAALID----HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHHHHH----hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 33444555 67999976 45689999999999998854
No 427
>PRK08303 short chain dehydrogenase; Provisional
Probab=31.42 E-value=88 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=27.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|+++++.++.| --.++|++|+++|++|.++.-
T Consensus 9 k~~lITGgs~G---IG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGATRG---AGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 78889888776 458999999999999988764
No 428
>PRK08339 short chain dehydrogenase; Provisional
Probab=31.39 E-value=82 Score=29.00 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=29.0
Q ss_pred CCCCCc-cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDH-VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~-~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|-++++ .|+++++.++.| --.++|+.|+++|++|.+..-
T Consensus 1 ~~~~~l~~k~~lItGas~g---IG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKG---IGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCccCCCCCEEEEeCCCCc---HHHHHHHHHHHCCCEEEEEeC
Confidence 445443 378888887664 367889999999999988764
No 429
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=31.29 E-value=83 Score=29.71 Aligned_cols=39 Identities=18% Similarity=0.050 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCc-cCHH---HHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPLPAV-GHVN---SMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~~~~-GH~~---p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
++||++++.+.. =|-. -...+.++|.++||+|.++....
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 348988885533 3333 56889999999999999997644
No 430
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=31.25 E-value=73 Score=31.49 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=31.5
Q ss_pred ccEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHVAILPL--PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
+++|+.++. |+.|-..-...||..|+++|++|.++=...
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 345544443 789999999999999999999999997644
No 431
>PRK08939 primosomal protein DnaI; Reviewed
Probab=31.23 E-value=65 Score=30.70 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=37.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIR 51 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 51 (476)
-+.+.-.++.|-.+=+.+||++|+++|+.|+|+..+.+...+..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 47777778999999999999999999999999998776555544
No 432
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=31.14 E-value=1.1e+02 Score=27.91 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
|.+|+|+-=++-|--.-.-.++.+|++.||+|..++-..-.+
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaD 42 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKAD 42 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcc
Confidence 458999999999999999999999999999999998754333
No 433
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=31.08 E-value=96 Score=25.83 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCccchh
Q 011848 6 HVHVAILPLPAVGHVNS-MLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p-~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
|+||+++-....|+.-- .-.|++.|...||+|.+...+....
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~ 43 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKD 43 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcch
Confidence 78999999999999876 4556788888899997766655433
No 434
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=30.90 E-value=1.1e+02 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=30.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYD 47 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 47 (476)
+++++..+. =+-|++.++++|.++|++|+++-.....+
T Consensus 100 ~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 100 TVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred eEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 788877665 38899999999999999999887644443
No 435
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=30.68 E-value=2.9e+02 Score=28.69 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=64.2
Q ss_pred ccCHHHHHHHH-HHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCC-------------CCCCC----
Q 011848 17 VGHVNSMLNLA-ELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD-------------GLPRD---- 78 (476)
Q Consensus 17 ~GH~~p~l~La-~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---- 78 (476)
.|++.-.+.++ +.+.+.|++|.+..+. +.+.+.+... +.++.++- .+...
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~~~-----------iPVv~i~~s~~Dil~al~~a~~~~~~ia~v 103 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSRLS-----------LPVIVIKPTGFDVMQALARARRIASSIGVV 103 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHhCC-----------CCEEEecCChhhHHHHHHHHHhcCCcEEEE
Confidence 47778888888 5577779999888774 4666666432 22333320 01000
Q ss_pred -CCCCCCChHHHHHHHHh-------hCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEEEecc
Q 011848 79 -HPRTPDKFPELVDSLNC-------ATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 79 -~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (476)
..........+...+.. .....+...++++ ..++++||.|.. +..+|+++|++.|.+.+.
T Consensus 104 g~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 104 THQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 00011112222221111 1244556666666 469999999964 679999999999988664
No 436
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=30.42 E-value=1.7e+02 Score=30.06 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=66.5
Q ss_pred eeeeccCHHH---HhCcCCCCcccc--ccChhHH-HHHHHhCCc---eeccccccchhhhhHhhhcceeeeEEeccccCH
Q 011848 346 CIAGWVPQEE---VLAHSAVGGFLT--HCGWNST-LESIVAGMP---MICWPSFADQQINSRFVGEVWKLGLDIKDLCDR 416 (476)
Q Consensus 346 ~~~~~vp~~~---ll~~~~~~~~I~--HgG~gs~-~eal~~GvP---~l~~P~~~DQ~~na~r~~e~~G~g~~~~~~~~~ 416 (476)
.+.+.+|+.+ ++..+++ ++|| .-|+|-+ .|.++++.. +|++--+ --|+ +.+.-++.+ ...+.
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSef----aGaa---~~l~~AllV-NP~d~ 435 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEF----AGAA---VELKGALLT-NPYDP 435 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecc----ccch---hhcCCCEEE-CCCCH
Confidence 4457788655 5667887 4454 4588855 599999772 2333211 1121 123335555 45799
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011848 417 NIVEKAVNDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIKM 468 (476)
Q Consensus 417 ~~l~~ai~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~~ 468 (476)
++++++|.++|+....+=+++.+++.+.++.. ....=++.++++|..
T Consensus 436 ~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 436 VRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSP 482 (487)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhh
Confidence 99999999999942244456666666666652 334445778877764
No 437
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=30.38 E-value=78 Score=27.55 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|||.++ +.||+ -+.+|-.|+++||+|+.+-...
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCCh
Confidence 577777 44444 5889999999999999987643
No 438
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=30.38 E-value=1.1e+02 Score=27.97 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
++++|+++-..+ .--..|++.|.++||+|+.++-
T Consensus 16 ~~~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAGATG----RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEECCCc----HHHHHHHHHHHhCCCEEEEEec
Confidence 466777665322 3346788999999999987764
No 439
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.36 E-value=97 Score=24.11 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.||+++|..+.+--.-.-.+-+.+.++|.++.+-..
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 3489999998775555556666666778998877554
No 440
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.33 E-value=76 Score=22.90 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCcc
Q 011848 22 SMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 22 p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
-.+.+|..|+++|++||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 46889999999999999998654
No 441
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=30.29 E-value=56 Score=29.29 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=23.9
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILP-LPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|||.|+- .+..| ..|+..|+++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 4788874 55554 4789999999999998764
No 442
>PRK00170 azoreductase; Reviewed
Probab=30.28 E-value=1e+02 Score=27.00 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCccC---HHHHH-HHHHHHHhC--CCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGH---VNSML-NLAELLGHA--GIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH---~~p~l-~La~~L~~r--GH~Vt~~~~~ 43 (476)
||||+++...-+.+ ..-+. .+.+.|.++ ||+|+++--.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 56876665543332 22333 345667777 9999888653
No 443
>PRK04328 hypothetical protein; Provisional
Probab=30.28 E-value=4.3e+02 Score=24.15 Aligned_cols=43 Identities=14% Similarity=-0.083 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHh
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVI 50 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 50 (476)
-+++.-.|+.|-..-.+.++.+-+++|+.+.+++.+...+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 4566667789998888888888778899999999877665443
No 444
>PRK13604 luxD acyl transferase; Provisional
Probab=30.23 E-value=1e+02 Score=29.38 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=30.7
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
+.++++++++-.++-.-+..+|+.|.++|..|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 346788888888887779999999999999988775
No 445
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.12 E-value=98 Score=28.18 Aligned_cols=39 Identities=28% Similarity=0.164 Sum_probs=28.6
Q ss_pred CCCCCc-cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDH-VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~-~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|..+.+ .|+++++.++.| --.++|++|+++|++|+++..
T Consensus 1 ~~~~~l~~k~~lItGas~g---IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 1 MQLFDLNGKVAIITGCNTG---LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCCcccCCCEEEEeCCCch---HHHHHHHHHHHCCCEEEEecC
Confidence 444433 378888887653 467889999999999988754
No 446
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.11 E-value=1e+02 Score=24.98 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
+|++-+..+-+|-.----++..|...|++|.-+...-..+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 578889999999999988999999999999998865444444433
No 447
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=30.10 E-value=86 Score=25.01 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.+|+++++|+. +...+..++.|.+.|.+++++..
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 47889988887 56789999999999999988875
No 448
>PRK06194 hypothetical protein; Provisional
Probab=29.98 E-value=1.1e+02 Score=28.47 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=26.5
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|..+++ |.++++.++. - --..|++.|+++|++|+++..
T Consensus 1 m~~~~~-k~vlVtGasg-g--IG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 1 MKDFAG-KVAVITGAAS-G--FGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CcCCCC-CEEEEeCCcc-H--HHHHHHHHHHHCCCEEEEEeC
Confidence 666654 4455665553 2 356789999999999988764
No 449
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=29.96 E-value=4.6e+02 Score=24.37 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc-cccccccc--ccCCCeeEEEcCCCCCCCCCCC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH-SSDAFSRY--MQIPGFQFKTLTDGLPRDHPRT 82 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (476)
..+|.|.-.|+-|-=.-.-.|++.|+++||+|-+++-......--.+ .|+....- ...+++=+.+++ +
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a---------t 99 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA---------T 99 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----------
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC---------c
Confidence 34778888899999999999999999999999999854321100000 00000000 001222222221 2
Q ss_pred CCChHHHHHHHHhhCcHHHHHHHHcCCCCceEEEecCCcc--cHHHHHHHhCCceEEEec
Q 011848 83 PDKFPELVDSLNCATPPLLKEMVSDSKSPVNCIITDGYMS--RAIDAAREVGVSIIYFRT 140 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~~--~~~~~A~~lgiP~v~~~~ 140 (476)
.+.+........ ..-.+++.. .+|+||.+..-. .-..+++..++-++.+.|
T Consensus 100 RG~lGGls~~t~-----~~v~ll~aa--G~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 100 RGSLGGLSRATR-----DAVRLLDAA--GFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp -SSHHHHHHHHH-----HHHHHHHHT--T-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CCCCCCccHhHH-----HHHHHHHHc--CCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 333443333332 245667776 999999997654 456666666666666533
No 450
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=29.96 E-value=56 Score=31.10 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
++||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 2 ~~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 2 MGSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CcEEEEECccHHH-----HHHHHHHHHCCCeeEEEeCC
Confidence 4689988877655 56888999999999999764
No 451
>PRK11914 diacylglycerol kinase; Reviewed
Probab=29.93 E-value=1.3e+02 Score=28.55 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCCccEEEEEcCCCccCH---HHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 3 KQDHVHVAILPLPAVGHV---NSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 3 ~~~~~~il~~~~~~~GH~---~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
.|+|+|++|+-.|..|.- .-.-.+.+.|.++|+++.++.+..
T Consensus 5 ~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 5 RHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 466788888888866542 234467889999999988666543
No 452
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.91 E-value=1.2e+02 Score=22.03 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 9 VAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
+++...++.|-..-...|+..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788899999999999999999998876
No 453
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=29.86 E-value=1e+02 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCceEEEecC--CcccHHHHHHHhCCceEEE
Q 011848 110 SPVNCIITDG--YMSRAIDAAREVGVSIIYF 138 (476)
Q Consensus 110 ~~~D~Ii~D~--~~~~~~~~A~~lgiP~v~~ 138 (476)
.++|.|++=. -...|..+|.++|+|+|..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 4799999432 2336999999999999996
No 454
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=29.81 E-value=45 Score=29.57 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=24.9
Q ss_pred CceEEE-ecCCcc-cHHHHHHHhCCceEEEecch
Q 011848 111 PVNCII-TDGYMS-RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 111 ~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (476)
.||+|| .|+..- .+..=|.++|||+|.++-+-
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 788876 666544 67778999999999987764
No 455
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=29.80 E-value=83 Score=31.69 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
.++||+++-.+-.| +++++.|.++|++|++.-...
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCC
Confidence 36799999999998 899999999999999997544
No 456
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=29.69 E-value=1.1e+02 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 011848 23 MLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~ 42 (476)
-..|++.|+++||+|+++..
T Consensus 18 G~~l~~~l~~~g~~v~~~~r 37 (246)
T PRK05653 18 GRAIALRLAADGAKVVIYDS 37 (246)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999877765
No 457
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.68 E-value=1e+02 Score=32.12 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=27.9
Q ss_pred ccEEEEEcCC-------CccCHHHHHH---HHHHHHhCCCEEEEEeCccc
Q 011848 6 HVHVAILPLP-------AVGHVNSMLN---LAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 6 ~~~il~~~~~-------~~GH~~p~l~---La~~L~~rGH~Vt~~~~~~~ 45 (476)
|.++++.+.. =.||+.+++. +|+-++.+||+|.|+|+.+-
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3466665432 2499997664 46667778999999997553
No 458
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=29.66 E-value=83 Score=31.45 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEe
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHA-GIKITFLN 41 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~ 41 (476)
|||+++-.++..| +|+++|.+. |+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 5999999997777 599999886 54444443
No 459
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=29.63 E-value=49 Score=32.24 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=50.0
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHH
Q 011848 11 ILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELV 90 (476)
Q Consensus 11 ~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (476)
|+..++-|..+-...+++...++|+.|.++...+.-+.. ... ...+.--|....+ .+..
T Consensus 15 iLG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~dd~------~v~------~v~~~GsP~v~~E-------~lp~-- 73 (353)
T PF06032_consen 15 ILGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPDDD------LVV------PVGMMGSPTVSVE-------KLPS-- 73 (353)
T ss_dssp HTTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--SSE-------EE------EEEEEE-HHHTT--------SS-H--
T ss_pred EEEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCCCC------cEe------EEEEeCCChHHhc-------cCCC--
Confidence 345678899999999999999999999999986531100 000 0222221100000 1110
Q ss_pred HHHHhhCcHHHHHHHHcCCCCceEEEecCCc----ccHHHHHHHhCCceEE
Q 011848 91 DSLNCATPPLLKEMVSDSKSPVNCIITDGYM----SRAIDAAREVGVSIIY 137 (476)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~D~Ii~D~~~----~~~~~~A~~lgiP~v~ 137 (476)
..- ....++.+.+.++.++|.|++--.- ..+..+|..+|+|+|=
T Consensus 74 g~e---~~~a~~~le~~~g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvD 121 (353)
T PF06032_consen 74 GDE---ALRAVEALEKYLGRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVD 121 (353)
T ss_dssp HHH---HHHHHHHHHHHTT--EEEEE-SSSSCCHHHHHHHHHHHHT-EEES
T ss_pred chH---HHHHHHHHHHhhCCCccEEeehhcCccchhHHHHHHHHhCCCEEc
Confidence 111 1122233333335689999975443 3677889999999874
No 460
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.62 E-value=60 Score=31.16 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|||.|+-.|+.| ..+|..|++.||+|+++..
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r 31 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGR 31 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 488999888886 4678999999999998886
No 461
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=29.61 E-value=94 Score=28.18 Aligned_cols=37 Identities=11% Similarity=0.389 Sum_probs=31.2
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 8 HVAILPL-PAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
.|.|... |+.|-..-.+.||..|+++|+.|.++-...
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~Dp 40 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADE 40 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4555554 789999999999999999999999998754
No 462
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=29.44 E-value=79 Score=28.27 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=51.3
Q ss_pred CccCHHHHHH---HHHHHHhCCCEEEEEeCccch-hhHhhcccccccccccCCCeeEEEcCCCCCCCCCCCCCChHHHHH
Q 011848 16 AVGHVNSMLN---LAELLGHAGIKITFLNTEHYY-DRVIRHSSDAFSRYMQIPGFQFKTLTDGLPRDHPRTPDKFPELVD 91 (476)
Q Consensus 16 ~~GH~~p~l~---La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (476)
=.||+.+++. +++-|+.+|++|.++++-... ..+..... . .......+..
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~----------------------~----~g~~p~e~~~ 88 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR----------------------E----EGLSWKEVAD 88 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH----------------------H----cCCCHHHHHH
Confidence 4599988653 466666789999999874432 22222100 0 0112233333
Q ss_pred HHHhhCcHHHHHHHHcCC-CCceEEEecCCcccHHHHHHHhCCceEE
Q 011848 92 SLNCATPPLLKEMVSDSK-SPVNCIITDGYMSRAIDAAREVGVSIIY 137 (476)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~-~~~D~Ii~D~~~~~~~~~A~~lgiP~v~ 137 (476)
. ....+++.++.++ ..||..+--.+.-|+.++.+.+|-|.=+
T Consensus 89 ~----~~~~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 89 Y----YTKEFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred H----HHHHHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 3 3345566666664 3446666555555777777777755433
No 463
>PRK13054 lipid kinase; Reviewed
Probab=29.44 E-value=1.2e+02 Score=28.75 Aligned_cols=39 Identities=10% Similarity=0.000 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.|+|++|+-.|..+...-...+.+.|.++|+++.+..+.
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~ 40 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTW 40 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEec
Confidence 466888887777666566677788899999998876654
No 464
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=29.38 E-value=1.7e+02 Score=21.72 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011848 424 NDLMVERKEEFMESADRMANLAKKSVNKGGSSYCNLDRLVNDIK 467 (476)
Q Consensus 424 ~~~l~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~i~~l~ 467 (476)
.+++++ +.+..++.+.+..+--.-. .| .++...|+|+|.
T Consensus 37 eeIls~--~t~~~r~~k~g~LLDIL~t-rG--~~g~~aFLeSLe 75 (86)
T cd08806 37 EEVLHS--PRLTNRAMRVGHLLDLLKT-RG--KNGAIAFLESLK 75 (86)
T ss_pred HHHHcc--chHHHHHHHHHHHHHHHHh-cC--chHHHHHHHHHH
Confidence 577887 8888899885554444322 34 688899999987
No 465
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=29.03 E-value=52 Score=33.69 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|++-.+++|.|+-.|.+| .++|..|+++||+|++..-
T Consensus 1 ~~~~~~~~IG~IGLG~MG-----~~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMG-----QNLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHH-----HHHHHHHHhCCCeEEEECC
Confidence 677678899999998887 5789999999999999874
No 466
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.95 E-value=1.2e+02 Score=27.96 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhc
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRH 52 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 52 (476)
-+++.-.|+.|...-.+..+...+++|..|.+++.....+.+.+.
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 456677789999999999999999999999999988776655444
No 467
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=28.89 E-value=69 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 011848 415 DRNIVEKAVNDLMVERKEEFMESADRM 441 (476)
Q Consensus 415 ~~~~l~~ai~~~l~~~~~~~~~~a~~l 441 (476)
++++|.+||..+.++. -++++.|+.+
T Consensus 1 tee~l~~Ai~~v~~g~-~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK-MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS-S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 5788999999987632 4566666654
No 468
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=28.84 E-value=63 Score=29.23 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 011848 23 MLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 23 ~l~La~~L~~rGH~Vt~~~~ 42 (476)
-.+||++|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 57889999999999998753
No 469
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.71 E-value=68 Score=28.95 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 19 HVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 19 H~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
|...|...|++|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 55678899999999999999999863
No 470
>PRK05868 hypothetical protein; Validated
Probab=28.67 E-value=85 Score=30.78 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=25.1
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|++|+|+-.| .--+.+|..|+++||+|+++-.
T Consensus 1 ~~~V~IvGgG-----~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 1 MKTVVVSGAS-----VAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEcC
Confidence 5688887555 3357888999999999999864
No 471
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=28.64 E-value=92 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=29.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGH-AGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~ 42 (476)
.|.|+-=|+-|-..-...||.+|++ +|++|.++-.
T Consensus 4 vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~ 39 (275)
T PRK13233 4 KIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGC 39 (275)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 5566645788999999999999997 6999999854
No 472
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.55 E-value=69 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 43 (476)
|+|+++-.+-.| ..+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 466666655444 68999999999999999863
No 473
>PRK11914 diacylglycerol kinase; Reviewed
Probab=28.46 E-value=2e+02 Score=27.27 Aligned_cols=82 Identities=9% Similarity=0.010 Sum_probs=46.2
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCCCCc
Q 011848 285 VIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSAVGG 364 (476)
Q Consensus 285 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~ 364 (476)
.+.++--|-.......+..+...+++.+..+.+..... +....+ +-........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~-----------~~~~~~-----------~a~~~~~~~~d~-- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD-----------AHDARH-----------LVAAALAKGTDA-- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC-----------HHHHHH-----------HHHHHHhcCCCE--
Confidence 34444333322234556677888888887765443211 111100 000111223454
Q ss_pred cccccChhHHHHHH----HhCCceeccccc
Q 011848 365 FLTHCGWNSTLESI----VAGMPMICWPSF 390 (476)
Q Consensus 365 ~I~HgG~gs~~eal----~~GvP~l~~P~~ 390 (476)
+|--||=||+.|++ ..++|+-++|..
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 99999999999997 347999999953
No 474
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=28.43 E-value=1.3e+02 Score=23.40 Aligned_cols=37 Identities=3% Similarity=0.038 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLN 41 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 41 (476)
.|.||+++|..+.|-=.-.-.+-++..+.|.++.+-.
T Consensus 2 ~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 2 EKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3558999999988766655567777777898887754
No 475
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.20 E-value=1.3e+02 Score=28.76 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=30.7
Q ss_pred CccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc-chhhHhh
Q 011848 5 DHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH-YYDRVIR 51 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~ 51 (476)
+-.+|.+.-.++.||+- +.+|+++ |++|+.+.+.. -.+...+
T Consensus 181 pG~~vgI~GlGGLGh~a--Vq~AKAM---G~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMA--VQYAKAM---GMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred CCcEEEEecCcccchHH--HHHHHHh---CcEEEEEeCCchhHHHHHH
Confidence 34589999999999974 5566666 99999999864 3444444
No 476
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=28.10 E-value=1.2e+02 Score=27.64 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.|.++++.++ | .--..+++.|+++|++|.++..
T Consensus 7 ~~~vlItGas-g--~iG~~la~~l~~~G~~v~~~~r 39 (262)
T PRK13394 7 GKTAVVTGAA-S--GIGKEIALELARAGAAVAIADL 39 (262)
T ss_pred CCEEEEECCC-C--hHHHHHHHHHHHCCCeEEEEeC
Confidence 3666666554 3 3456789999999999987765
No 477
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=28.10 E-value=64 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=26.0
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.||.|+-.|.+| ..+|..|+++||+|+++..
T Consensus 1 m~~Ig~IGlG~mG-----~~mA~~l~~~G~~V~v~d~ 32 (296)
T PRK15461 1 MAAIAFIGLGQMG-----SPMASNLLKQGHQLQVFDV 32 (296)
T ss_pred CCeEEEEeeCHHH-----HHHHHHHHHCCCeEEEEcC
Confidence 3489998777666 6789999999999988764
No 478
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=28.02 E-value=1.3e+02 Score=26.52 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccEEEEEcC--CCccCHHHHHHHHHHHHh-CCCEEEEEeCcc
Q 011848 6 HVHVAILPL--PAVGHVNSMLNLAELLGH-AGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~ 44 (476)
++|++.++. ++-|-..-...||..|++ +|++|.++-...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 456655554 688888889999999997 699999997644
No 479
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=27.94 E-value=1.1e+02 Score=26.07 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=31.8
Q ss_pred ccEE-EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCcc
Q 011848 6 HVHV-AILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 6 ~~~i-l~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 44 (476)
||+| .|+-+-..|-..=+-.|...|.+||+.|..+-...
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 3455 55566688999999999999999999999998754
No 480
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.84 E-value=47 Score=28.64 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHH-HhCCCEEEEEeCccchhhHhhcccccccccccCCCeeEEEcCC-------------CCCCC-----
Q 011848 18 GHVNSMLNLAELL-GHAGIKITFLNTEHYYDRVIRHSSDAFSRYMQIPGFQFKTLTD-------------GLPRD----- 78 (476)
Q Consensus 18 GH~~p~l~La~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~----- 78 (476)
+.+.-.+..|+.| .+.|.+|.+..+. +...+.+... +.++.++- .....
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~-----------iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~ 84 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVS-----------IPVVEIPISGFDILRALAKAKKYGPKIAVVG 84 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-S-----------S-EEEE---HHHHHHHHHHCCCCTSEEEEEE
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCC-----------CCEEEECCCHhHHHHHHHHHHhcCCcEEEEe
Confidence 5667788999999 8889999998874 4666666532 33333330 00000
Q ss_pred CCCCCCChHHHHHHHHh-------hCcHHHHHHHHcC-CCCceEEEecCCcccHHHHHHHhCCceEEEecch
Q 011848 79 HPRTPDKFPELVDSLNC-------ATPPLLKEMVSDS-KSPVNCIITDGYMSRAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~-~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~~~~ 142 (476)
......+...+...+.- .....+...++++ ..+.|+||.+.. ...+|+++|+|++.+.+..
T Consensus 85 ~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 85 YPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp ESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred cccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 00011222222222110 1244556666665 458999999964 5799999999999986643
No 481
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=27.84 E-value=3.6e+02 Score=25.37 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchHHHHHhcCCceeeeccCHHHHhCcCC
Q 011848 282 KQSVIYVSFGSIAVMSRDQLIEFYYGLVHSKKSFLWVIRPDLISGKDGENQIPEELLEATKERGCIAGWVPQEEVLAHSA 361 (476)
Q Consensus 282 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp~~~ll~~~~ 361 (476)
++.++.+.+|.+. ..++..+...+.++.+.-.. ++..............+.+..+++..++
T Consensus 151 gk~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~------------~~~~~~~~~~g~~~~~~~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTG-------MTIARTFSALGARVFVGARS------------SADLARITEMGLIPFPLNKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCC------------HHHHHHHHHCCCeeecHHHHHHHhccCC
Confidence 5778889988876 56667777778765543321 1111110111222334444566788888
Q ss_pred CCccccccChhHHHHH
Q 011848 362 VGGFLTHCGWNSTLES 377 (476)
Q Consensus 362 ~~~~I~HgG~gs~~ea 377 (476)
+ +|.|...+.+.+.
T Consensus 212 i--Vint~P~~ii~~~ 225 (287)
T TIGR02853 212 I--VINTIPALVLTAD 225 (287)
T ss_pred E--EEECCChHHhCHH
Confidence 7 9999877654443
No 482
>PRK12829 short chain dehydrogenase; Provisional
Probab=27.82 E-value=1.1e+02 Score=27.82 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.+++ ++.+ .|.+ ...+++.|+++||+|+.+..
T Consensus 12 ~~vl-ItGa-~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVL-VTGG-ASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CEEE-EeCC-CCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 3444 4433 3554 57889999999999988775
No 483
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.79 E-value=86 Score=32.43 Aligned_cols=35 Identities=6% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEe
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~ 139 (476)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 445555554 899999885 36779999999998764
No 484
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=27.78 E-value=1.1e+02 Score=28.42 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCceEEEecCCcc------cHHHHHHHhCCceEEEecc
Q 011848 99 PLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTI 141 (476)
Q Consensus 99 ~~~~~ll~~~~~~~D~Ii~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (476)
..+...+++. ++|+|++.--.. -+..+|+.||+|++.+..-
T Consensus 101 ~~Laa~~~~~--~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 101 KALAAAVKKI--GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHhc--CCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 3456677775 999999543322 6899999999999997543
No 485
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.71 E-value=1.1e+02 Score=27.88 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=25.9
Q ss_pred cEEEEEcCCC--ccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 7 VHVAILPLPA--VGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 7 ~~il~~~~~~--~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
.|+++++.++ .| =-.++|++|+++|++|.+..-
T Consensus 7 ~k~~lItGas~~~g---IG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 7 GKKIVVMGVANKRS---IAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CCEEEEeCCCCCCc---hHHHHHHHHHHCCCEEEEecC
Confidence 4888888876 33 247899999999999988753
No 486
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.70 E-value=1.3e+02 Score=28.82 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhcc
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHS 53 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 53 (476)
+.-|+|+-..+.|-....-.||+.|.+.|+.|.++....|++...+..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL 186 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQL 186 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH
Confidence 446788888999999999999999999999999999999987555443
No 487
>PLN02929 NADH kinase
Probab=27.70 E-value=84 Score=29.80 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=41.0
Q ss_pred cCCCCccccccChhHHHHHHHh---CCceecccccc------chhhhhHhhhcceeeeEEeccccCHHHHHHHHHHHHhH
Q 011848 359 HSAVGGFLTHCGWNSTLESIVA---GMPMICWPSFA------DQQINSRFVGEVWKLGLDIKDLCDRNIVEKAVNDLMVE 429 (476)
Q Consensus 359 ~~~~~~~I~HgG~gs~~eal~~---GvP~l~~P~~~------DQ~~na~r~~e~~G~g~~~~~~~~~~~l~~ai~~~l~~ 429 (476)
.+++ +|+-||-||+..|.+. ++|++.+-... .++.|.-.. ..-+|-. -..+.+++.+++.++++.
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL--~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHL--CAATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCcccc--ccCCHHHHHHHHHHHHcC
Confidence 4565 9999999999999664 68888875431 122222111 1112311 245688899999999873
No 488
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=27.64 E-value=39 Score=31.61 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=31.3
Q ss_pred cChhHH--HHHHHhCCceeccccccchhhhhHhhhcceeee
Q 011848 369 CGWNST--LESIVAGMPMICWPSFADQQINSRFVGEVWKLG 407 (476)
Q Consensus 369 gG~gs~--~eal~~GvP~l~~P~~~DQ~~na~r~~e~~G~g 407 (476)
||||++ .-|-.+|+-++.+-+...|..++..-.++.|+.
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 577754 456677999999999999999999833567888
No 489
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.63 E-value=1.1e+02 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=24.0
Q ss_pred CCCCCccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 1 MEKQDHVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|.+++. |.++++..+. - =-..+++.|.++||+|+++.-
T Consensus 1 ~~~~~~-k~vlItGasg-g--iG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 1 MGDLPG-KTALVTGSSR-G--IGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCCC-cEEEEECCCC-c--HHHHHHHHHHHCCCEEEEEeC
Confidence 555543 3444444332 2 346789999999999988754
No 490
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.47 E-value=86 Score=32.39 Aligned_cols=35 Identities=6% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCceEEEecCCcccHHHHHHHhCCceEEEe
Q 011848 100 LLKEMVSDSKSPVNCIITDGYMSRAIDAAREVGVSIIYFR 139 (476)
Q Consensus 100 ~~~~ll~~~~~~~D~Ii~D~~~~~~~~~A~~lgiP~v~~~ 139 (476)
.+.+.+++. +||+|+.+. ....+|+++|||++.++
T Consensus 365 ei~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 345566665 899999996 35667899999998864
No 491
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=27.45 E-value=52 Score=32.59 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=21.1
Q ss_pred ccCHHHHH---HHHHHHHhCCCEEEEEeCcc
Q 011848 17 VGHVNSML---NLAELLGHAGIKITFLNTEH 44 (476)
Q Consensus 17 ~GH~~p~l---~La~~L~~rGH~Vt~~~~~~ 44 (476)
.||+.|++ .+++-++.+||+|.++++.+
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 49999766 45777777899999999744
No 492
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.42 E-value=1.2e+02 Score=27.73 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=26.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 8 HVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
|+++++..+.|. ---.++|+.|+++|++|.+...
T Consensus 9 k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 9 KKGLITGIANNM-SISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred cEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEeC
Confidence 889999988631 0346889999999999988653
No 493
>PRK07308 flavodoxin; Validated
Probab=27.40 E-value=1.1e+02 Score=25.32 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCc
Q 011848 5 DHVHVAILPLPAVGHVNS-MLNLAELLGHAGIKITFLNTE 43 (476)
Q Consensus 5 ~~~~il~~~~~~~GH~~p-~l~La~~L~~rGH~Vt~~~~~ 43 (476)
.|.+|++ ...+||..- .-.|++.|.++||+|.+....
T Consensus 2 ~~~~IvY--~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 2 ALAKIVY--ASMTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred ceEEEEE--ECCCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 3445554 448888886 556789999999999887543
No 494
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=27.20 E-value=58 Score=29.81 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=24.8
Q ss_pred CceEEE-ecCCcc-cHHHHHHHhCCceEEEecch
Q 011848 111 PVNCII-TDGYMS-RAIDAAREVGVSIIYFRTIS 142 (476)
Q Consensus 111 ~~D~Ii-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (476)
.||+|| +|+..- -+..=|.++|||+|.++-+-
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCC
Confidence 677766 676544 67788999999999997764
No 495
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=27.15 E-value=3.4e+02 Score=26.46 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=34.6
Q ss_pred CcHHHHHHHHcCCCCceEEEecCCcc------cHHHHHHHhCCceEEEecchhhHHHH
Q 011848 97 TPPLLKEMVSDSKSPVNCIITDGYMS------RAIDAAREVGVSIIYFRTISACAFWS 148 (476)
Q Consensus 97 ~~~~~~~ll~~~~~~~D~Ii~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~~~~ 148 (476)
+.+.++.++++-+.+.|.+|.-.+.. .=..+++++++|.|+.-.-+.--+..
T Consensus 177 ~PPa~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVaGFEp~DiL~~ 234 (369)
T TIGR00075 177 VPPAVEALLENPAVQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIAGFEPVDILQA 234 (369)
T ss_pred cHHHHHHHHcCCCCCccEEEecCEEEEEeccchhHHHHHHcCCCeEEeccCHHHHHHH
Confidence 45677777766334788888766544 23467899999999975555443333
No 496
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=27.13 E-value=1.8e+02 Score=23.48 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=27.1
Q ss_pred EEEEcCCCccCHHH--HHHHHHHHHhCC-CEEEEEeCcc
Q 011848 9 VAILPLPAVGHVNS--MLNLAELLGHAG-IKITFLNTEH 44 (476)
Q Consensus 9 il~~~~~~~GH~~p--~l~La~~L~~rG-H~Vt~~~~~~ 44 (476)
.++++.|.||+-+- .+.+|++|.+.| |+|.++-..+
T Consensus 4 ~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~D 42 (126)
T COG1553 4 TIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQD 42 (126)
T ss_pred EEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEeec
Confidence 36677789997664 666799999996 6688877644
No 497
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=27.13 E-value=1.2e+02 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011848 6 HVHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNT 42 (476)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 42 (476)
+++-+++|.-+.| =-.++|+.|++|||+|.++.-
T Consensus 5 ~~~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 5 KGKTALITGASSG---IGAELAKQLARRGYNLILVAR 38 (265)
T ss_pred CCcEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 3466666766665 246899999999999999985
No 498
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=26.97 E-value=95 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCccccccCh------hHHHHHHHhCCceeccc
Q 011848 362 VGGFLTHCGW------NSTLESIVAGMPMICWP 388 (476)
Q Consensus 362 ~~~~I~HgG~------gs~~eal~~GvP~l~~P 388 (476)
.+++++|+|- +.+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3346777664 47788999999999995
No 499
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=26.92 E-value=2e+02 Score=28.78 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCccc
Q 011848 7 VHVAILPLPAVGHVNSMLNLAELLGHAGIKITFLNTEHY 45 (476)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 45 (476)
|||+++-.+..+| .|++++++-|+.++++..+.+
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCC
Confidence 5899998888754 678888888888777766553
No 500
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=1.2e+02 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCccchhhHhhccc
Q 011848 15 PAVGHVNSMLNLAELLGHAGIKITFLNTEHYYDRVIRHSS 54 (476)
Q Consensus 15 ~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 54 (476)
-+..|+.-++.=+++|+..|.+..++.+-. -..+.++++
T Consensus 59 Cs~~HvPGyi~~a~elksKGVd~iicvSVn-DpFv~~aW~ 97 (171)
T KOG0541|consen 59 CSSSHVPGYIEKADELKSKGVDEIICVSVN-DPFVMKAWA 97 (171)
T ss_pred cccccCchHHHHHHHHHhcCCcEEEEEecC-cHHHHHHHH
Confidence 378899999999999999999987777532 344555544
Done!