Query 011850
Match_columns 476
No_of_seqs 212 out of 529
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2232 Ceramidases [Signal tr 100.0 6E-138 1E-142 1066.0 29.3 431 1-476 50-493 (734)
2 PF04734 Ceramidase_alk: Neutr 100.0 2E-125 5E-130 1034.8 31.3 411 1-476 20-437 (674)
3 PTZ00487 ceramidase; Provision 100.0 6E-123 1E-127 1011.6 41.0 412 1-476 58-477 (715)
4 COG3356 Predicted membrane pro 97.7 0.00026 5.7E-09 77.1 12.1 117 1-131 413-533 (578)
5 PF09843 DUF2070: Predicted me 97.6 0.00069 1.5E-08 64.3 11.3 116 2-131 43-163 (179)
6 PF01282 Ribosomal_S24e: Ribos 59.3 20 0.00044 30.1 4.9 35 44-80 11-45 (84)
7 PTZ00397 macrophage migration 56.9 29 0.00062 30.3 5.7 50 23-75 49-103 (116)
8 PF14552 Tautomerase_2: Tautom 41.4 35 0.00077 28.5 3.6 45 30-76 26-75 (82)
9 TIGR03196 pucD xanthine dehydr 36.7 1.8E+02 0.004 33.9 9.7 99 29-130 475-574 (768)
10 COG3657 Uncharacterized protei 36.6 18 0.00039 31.5 1.2 27 288-333 36-62 (100)
11 PF05237 MoeZ_MoeB: MoeZ/MoeB 31.5 79 0.0017 26.1 4.2 39 338-380 29-67 (84)
12 PF09580 Spore_YhcN_YlaJ: Spor 31.0 1.3E+02 0.0029 27.9 6.1 47 18-73 91-141 (177)
13 PTZ00450 macrophage migration 28.4 1.3E+02 0.0029 26.5 5.3 49 23-74 49-102 (113)
14 PRK01178 rps24e 30S ribosomal 27.9 1.1E+02 0.0025 26.6 4.7 45 34-80 19-63 (99)
15 cd06808 PLPDE_III Type III Pyr 25.5 4.3E+02 0.0092 24.5 8.6 40 34-80 109-154 (211)
16 KOG3424 40S ribosomal protein 21.0 1.4E+02 0.003 27.2 4.0 35 44-80 33-67 (132)
17 PF15601 Imm42: Immunity prote 20.9 2.6E+02 0.0057 25.8 5.9 67 48-123 62-133 (134)
18 PRK00111 hypothetical protein; 20.6 1.9E+02 0.0041 28.0 5.1 54 19-77 106-162 (180)
19 TIGR00151 ispF 2C-methyl-D-ery 20.6 1.5E+02 0.0032 28.1 4.2 46 33-80 88-139 (155)
20 PRK00084 ispF 2-C-methyl-D-ery 20.3 1.5E+02 0.0031 28.2 4.2 42 33-76 91-137 (159)
No 1
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-138 Score=1065.98 Aligned_cols=431 Identities=74% Similarity=1.225 Sum_probs=419.7
Q ss_pred CCccCCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 011850 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (476)
Q Consensus 1 M~GYa~~~q~a~GihdrL~ARA~Vl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (476)
||||++..|.+.|||.||||||||++++.++|++||++|++|+.+.++.+|.+||+++||++|.++||.||+||||+||+
T Consensus 50 mMGYan~~QvasGIh~Rl~aRaFIvaep~gnRv~FVs~DagM~sq~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPg 129 (734)
T KOG2232|consen 50 MMGYANSEQVASGIHFRLRARAFIVAEPQGNRVAFVSLDAGMASQGLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPG 129 (734)
T ss_pred eccccchhhhhchheeeeeeeeEEEecCCCceEEEEecchhhhhhhhHHHHHHHHHHhhcccccccceeEecccccCCCc
Confidence 89999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcCcCCCCCCCe
Q 011850 81 GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDKE 160 (476)
Q Consensus 81 G~~~~~l~~it~~Gf~~~y~~~lvdgIv~AI~~A~~nl~Pa~l~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~~ 160 (476)
||++|++|.++++||.++.|+.+|++|.++|.+||+||+|++|.+++|++.++++|||+.+|++||.+||++|+.++|++
T Consensus 130 Gylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenlrpG~iflnkg~llda~vNRSPssYL~NPa~ERsky~~d~DKe 209 (734)
T KOG2232|consen 130 GYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENLRPGSIFLNKGELLDAGVNRSPSSYLNNPAEERSKYEYDVDKE 209 (734)
T ss_pred ceeeeeeeeehhcccchHHHHHHHHHHHHHHHHHHhcCCCCeEEecccceecccccCChhHHhcChHhhhhcCccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCcEE---EEEeeeecccccC---CCCcccc---CChHHHHHHHHHHHhcccCCCCCCcccccccCCCcc
Q 011850 161 MTLLKFVDDQWGPVG---SFNWFATHGTSMS---RTNSLIS---GDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRR 231 (476)
Q Consensus 161 m~vLkf~~~dG~~ig---~L~nfA~HpTsl~---~~N~lIS---~D~~G~As~~lE~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
|++|||+|..+.++| +..||++|+++|+ +.|+++| +|+.||++++||++.+.
T Consensus 210 mtllkfVD~q~~~~Gar~m~dWf~~h~~~~n~~~n~~r~Vss~isd~~~~a~~Lle~~~~~------------------- 270 (734)
T KOG2232|consen 210 MTLLKFVDLQWGPLGARFMEDWFEVHNGSMNSSRNSPRRVSSIISDNVGYASLLLEKASNP------------------- 270 (734)
T ss_pred eEEEEEEeccCCccchHHHHHHHHhcccccccccCCcceecccccccccHHHHHHHHhhCc-------------------
Confidence 999999999999999 5999999999999 8899999 99999999999998765
Q ss_pred ccccccccccchhHHHHHhhccCCCCCCchhhhhhHhhhhcccccccCCCCeEEEeecCCCCCCCCCCCCCcccCCCCCC
Q 011850 232 VSDIISDFRNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPC 311 (476)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qsn~GDvsPN~~g~~c~d~g~~c 311 (476)
.+.+||.+++.+|.+++||. .+++.||+||||||+||||||++||||+|||+||
T Consensus 271 ----------------------~~~pG~~v~~~~~~~~rvr~----~~k~~FVsAFcqsN~GDVSPNilG~~CidtG~~C 324 (734)
T KOG2232|consen 271 ----------------------NSMPGKSVTRSSSVARRVRN----ADKGKFVSAFCQSNCGDVSPNILGPFCIDTGLPC 324 (734)
T ss_pred ----------------------ccCCCcccccchhhhhhhhc----ccccchhhhhhhccCCCCCcccccchhhcCCCcc
Confidence 24568999999999999996 7789999999999999999999999999999999
Q ss_pred CCCCCcCCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHhhcCCccccceeEEEEeEecceeEEecCCCCCCCCcc
Q 011850 312 DFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETV 391 (476)
Q Consensus 312 ~~~~s~c~g~~~~c~~~gP~~~d~~est~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~ 391 (476)
|+++|||+|++++|.|+|||++||||||||||+|||+.|++||++++++++|+|+|+|+||||++++|+.+...+..+.+
T Consensus 325 d~~~StC~g~~~~C~~rGPG~pD~FeSTrIiGer~~k~A~eLfnkaSeevqG~v~~~H~~vD~s~l~vt~n~~~~~se~v 404 (734)
T KOG2232|consen 325 DFNHSTCPGGNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEEVQGKVDYRHQYVDFSNLNVTLNKLSGKSEVV 404 (734)
T ss_pred ccccCcCCCCCcceeccCCCCcchhhhhhHHhHHHHHHHHHHHHhhHHHhcCcccceeEeeccccceeEecCcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887888899
Q ss_pred cCCcccccccccccCCCCCCCcCccCCCCCCCchHHhhhhccCCCCHhhhhccCCCcceecCCCCCCCCccccccccc--
Q 011850 392 KTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWASLRQWL-- 469 (476)
Q Consensus 392 ~tc~~a~G~sfaaGt~DGpg~~~f~qg~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~w~p~~~~~-- 469 (476)
||||||||||||||||||||+|+|+||++.|||||++||++|++|++||++||+||||||+||||++||+|+|+|+++
T Consensus 405 ktC~~AmGf~FAAGTtDGpGafdF~QG~~~gnpfW~~VRn~l~~P~~e~i~Ch~PKPILL~TGemt~PydW~P~Iv~~Qi 484 (734)
T KOG2232|consen 405 KTCPAAMGFSFAAGTTDGPGAFDFTQGDDQGNPFWRLVRNVLKTPTEEQIKCHKPKPILLDTGEMTKPYDWAPSIVSVQI 484 (734)
T ss_pred ccCcccccccccccccCCCCccccccCCcCCChHHHHHHHHHcCCCHHHhcccCCCceEecccccCCCcCCCccccchhe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ccccccC
Q 011850 470 --GGDFVML 476 (476)
Q Consensus 470 --~~~~~~~ 476 (476)
|||++|+
T Consensus 485 lriGql~I~ 493 (734)
T KOG2232|consen 485 LRIGQLVIL 493 (734)
T ss_pred eeeccEEEE
Confidence 9999874
No 2
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=100.00 E-value=2.3e-125 Score=1034.77 Aligned_cols=411 Identities=60% Similarity=0.975 Sum_probs=291.1
Q ss_pred CCccCCCCCccceeecceEEEEEEEEeC-CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCC
Q 011850 1 MMGYANMEQIASGIHFRLRARTFIVAEP-QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGP 79 (476)
Q Consensus 1 M~GYa~~~q~a~GihdrL~ARA~Vl~d~-~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgP 79 (476)
||||+++.|+++|||||||||||||++. +++|+|||++|++++++.++++|+++|++++|.+|+++||+|++|||||||
T Consensus 20 m~GYa~~~q~a~GihdrLyARAfVl~~~~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~g~~y~~~nViIsaTHTHSgP 99 (674)
T PF04734_consen 20 MMGYANRSQVATGIHDRLYARAFVLEDDDGGTRVVFVSLDLLMIPQEVRDEVRERLAAKYGILYDEENVIISATHTHSGP 99 (674)
T ss_dssp EESS--SS-EEEEESS--EEEEEEEEESSS--EEEEEEESSS---HHHHHHHHHHHHHHSTTT-SGGGEEEEE--BSBEE
T ss_pred cCCCCCCCCCccceecceEEEEEEEEecCCCCEEEEEEeCccccCHHHHHHHHHHHHHhhcCCCChheEEEEeEecCCCC
Confidence 8999999999999999999999999942 579999999999999999999999999999998899999999999999999
Q ss_pred CCCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcCcCCCCCCC
Q 011850 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (476)
Q Consensus 80 gG~~~~~l~~it~~Gf~~~y~~~lvdgIv~AI~~A~~nl~Pa~l~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~ 159 (476)
+||.++++++++..||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+.+|++||++||.+|++++||
T Consensus 100 gg~~~~~~~~~~~~gf~~~~~~~lv~gIv~aI~~A~~~L~pa~l~~g~g~~~~a~~NRs~~ay~~NP~~er~~y~g~vD~ 179 (674)
T PF04734_consen 100 GGYSHYLLYNITSGGFDPEYYDALVDGIVEAIEQAHENLQPARLGFGTGELSDANINRSPSAYLRNPAEERARYDGPVDP 179 (674)
T ss_dssp ----SSHHHHGGGTB--HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE--SSEEETTHHHHTT-T--T-TT-TTS---
T ss_pred CccccccccccccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeEEEecceeecCCchhhhcCccccccccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCcEEEEEeeeecccccCCCCccccCChHHHHHHHHHHHhcccCCCCCCcccccccCCCcccccccccc
Q 011850 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (476)
Q Consensus 160 ~m~vLkf~~~dG~~ig~L~nfA~HpTsl~~~N~lIS~D~~G~As~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (476)
+|+||||++.||+++|+|+|||||||+|+++|++||+|||||++++||++++. .
T Consensus 180 ~~~vLrf~~~dG~~ig~L~nfAvHpTsl~~~N~lIS~D~~G~aa~~lE~~~~~----------------~---------- 233 (674)
T PF04734_consen 180 EMTVLRFRDADGKPIGVLNNFAVHPTSLGNTNRLISGDNKGYAAYLLEKELGG----------------D---------- 233 (674)
T ss_dssp EEEEEEEEETTS-EEEEEEE----B-SS-TT--SBB-HHHHHHHHHHHHTT-----------------------------
T ss_pred ceeEEEEEeCCCCEEEEEEEEcccceeccCCCCeecCCcHhHHHHHHHHhhcc----------------c----------
Confidence 99999999999999999999999999999999999999999999999999875 0
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhHhhhhcccccccCCCCeEEEeecCCCCCCCCCCCCCcccCCCCCCCCCCCcCC
Q 011850 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qsn~GDvsPN~~g~~c~d~g~~c~~~~s~c~ 319 (476)
..+.++|||||+|+|+||||||+.||||+|||++||+++|||+
T Consensus 234 -------------------------------------~~~~~~fVaaFaq~n~GDvsPN~~g~~c~~~g~~c~~~~s~c~ 276 (674)
T PF04734_consen 234 -------------------------------------LAGKPPFVAAFAQGNAGDVSPNTLGPFCEDTGLPCDFEHSTCG 276 (674)
T ss_dssp ----------------------------------------STT-EEEEE-SS-TTEES-SS-------------------
T ss_pred -------------------------------------ccCCCCeEEEEccCCcccccccccccccccccccccccccccc
Confidence 1237899999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHhhcCCccccceeEEEEeEecceeEEecCCCCCCCCcccCCccccc
Q 011850 320 GKNEMCYGRGPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAMG 399 (476)
Q Consensus 320 g~~~~c~~~gP~~~d~~est~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~~tc~~a~G 399 (476)
|+.++|+++||+ .||||||+|||+|||++|++||++++++|+|+|+++|+||||++++|+. ..|++++.+||||||||
T Consensus 277 ~~~~~~~~~Gp~-~d~~~s~~iig~rq~~~A~~l~~~~~~~~~g~v~~~~~~vdm~~~~v~~-~~~~~~~~~~tc~~a~G 354 (674)
T PF04734_consen 277 GKNELCHGRGPG-KDMFESTRIIGERQFDKARELYDSASEELTGPVDSRHQYVDMSNVTVDP-PFTGDGKTVRTCPAAMG 354 (674)
T ss_dssp ----SSSTSSST-S-HHHHHHHHHHHHHHHHHHHHHHT-EEE-S-EEEEEEEEE-TT-EE-G-GGT-TSS-EE-----EE
T ss_pred ccccccCCCCCC-ccchHHHHHHHHHHHHHHHHHhhccCcccCCCEeEEEEEEcCCCeEEcc-CCCCCCCcCcccccccc
Confidence 999999999999 5999999999999999999999999999999999999999999999996 44467889999999999
Q ss_pred ccccccCCCCCCCcCccCCCC--CCCchHHhhhhccCCCCHhhhhccCCCcceecCCCCCCCCccccccccc----cccc
Q 011850 400 FAFAAGTTDGPGAFDFTQGDD--KGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWASLRQWL----GGDF 473 (476)
Q Consensus 400 ~sfaaGt~DGpg~~~f~qg~~--~~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~w~p~~~~~----~~~~ 473 (476)
||||||||||||.|+|+||++ .+||||++|+++|++|++||++||+||||||+||+|++||||+|+|++| ||+|
T Consensus 355 ~sfaAGt~DGpg~~~f~qg~~~~~~~p~w~~v~~~~~~p~~~~~~cq~pKpiLl~~G~~~~p~~w~p~i~~~Qi~riG~l 434 (674)
T PF04734_consen 355 YSFAAGTEDGPGAFDFTQGDTEVEGNPFWDLVRDFLKKPSPEQVACQAPKPILLPTGEMNFPYPWVPNIVPIQIVRIGQL 434 (674)
T ss_dssp ----SSSSSSS-SS---SSS------HHHHHHT-SSS---HHHHHHTTT--EEE--TT--SSS-SS-SEEEEEEEEETTE
T ss_pred cccccccccCCCcccccCCCcccccchHHHHHhhhccCCCHHHHhccCCCcEEEeccccCCCcccCCceEEEEEEEEcCE
Confidence 999999999999999999998 7899999999999999999999999999999999999999999999999 9998
Q ss_pred ccC
Q 011850 474 VML 476 (476)
Q Consensus 474 ~~~ 476 (476)
+|+
T Consensus 435 ~i~ 437 (674)
T PF04734_consen 435 VIV 437 (674)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 3
>PTZ00487 ceramidase; Provisional
Probab=100.00 E-value=5.7e-123 Score=1011.59 Aligned_cols=412 Identities=49% Similarity=0.885 Sum_probs=390.8
Q ss_pred CCccCCCCCccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhC-CCCCCCcEEEEeeccCCCC
Q 011850 1 MMGYANMEQIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYG-DLYTEKNVAISGIHTHAGP 79 (476)
Q Consensus 1 M~GYa~~~q~a~GihdrL~ARA~Vl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G-~~i~~~nVlIsATHTHSgP 79 (476)
||||+.+.|+++|||||||||||||+|.+++|++||++|+++++++++++|+++|+++|| ++|+++||+|++|||||||
T Consensus 58 m~GYa~~~q~a~GvhdrLyARAfVl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~Gi~~y~~~NVllsATHTHSGP 137 (715)
T PTZ00487 58 MMGYAMPDQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVVPKLQEIFGPDLYTLDNVLLSGTHTHSGP 137 (715)
T ss_pred ccccccCCcCccceecceeEEEEEEEeCCCCEEEEEEEcccCCCHHHHHHHHHHHHHHhCcCcCChhhEEEEeeecCCCC
Confidence 899999999999999999999999965468999999999999999999999999999999 7889999999999999999
Q ss_pred CCCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEeccccccCChhhhcCCChhhcCcCCCCCCC
Q 011850 80 GGYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELLDASISRSPSAYLNNPASERGKYKYNVDK 159 (476)
Q Consensus 80 gG~~~~~l~~it~~Gf~~~y~~~lvdgIv~AI~~A~~nl~Pa~l~~g~g~~~~~~~NRs~~ay~~NP~~er~~y~g~vD~ 159 (476)
++|.++.+|+++++||+++|+++|+++|++||++||++|+|++|.++++++.++++|||+.+|++||++||.+|++++||
T Consensus 138 gg~~~~~l~~~ts~Gf~~qy~~~lvdgIv~AI~~A~~nL~Pa~l~~g~g~~~~aniNRs~~ay~~NP~~er~~y~g~vD~ 217 (715)
T PTZ00487 138 AGFSFYALYGITTLGFYKKNFDTICEGIVQAIVKAHKSVQPARMYTNSGELWNSNINRSPTAYDNNPEEEKAMYDGNVDK 217 (715)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeeEEeccccccCChhhhhcCchhhccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCcEEEEEeeeecccccCCCCccccCChHHHHHHHHHHHhcccCCCCCCcccccccCCCcccccccccc
Q 011850 160 EMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQSNAGHSSADELVSEGIPRRVSDIISDF 239 (476)
Q Consensus 160 ~m~vLkf~~~dG~~ig~L~nfA~HpTsl~~~N~lIS~D~~G~As~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (476)
+|+||+|++.||+++|+|+|||||||+|+++|++||+||||+++++||+.+++. . ..
T Consensus 218 ~m~vLrf~~~dGkpig~L~~fA~H~Tsl~~~N~lISgD~~G~Aa~~lEk~~~~~---------------~-----~~--- 274 (715)
T PTZ00487 218 NMTVLRIEDMNGNPFAAISFFAVHCTSMNNTNHLISGDNKGYASYLWEKYKNGN---------------D-----SF--- 274 (715)
T ss_pred ceEEEEEEcCCCCEEEEEEEEeecccccCCCCceecCchHHHHHHHHHHHhccC---------------c-----cC---
Confidence 999999999999999999999999999999999999999999999999998761 1 01
Q ss_pred ccchhHHHHHhhccCCCCCCchhhhhhHhhhhcccccccCCCCeEEEeecCCCCCCCCCCCCCcccCCCCCCCCCCCcCC
Q 011850 240 RNNHHELLELAASFQSPPGKAATKILSVARRVRGILREAEKPGFVSAFCQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCG 319 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fVaaF~qsn~GDvsPN~~g~~c~d~g~~c~~~~s~c~ 319 (476)
++.++|||||+|+|+||||||++||+|+| |+|||+++|||+
T Consensus 275 --------------------------------------pg~~~FVAaF~qg~~GDvsPn~~g~~c~~-g~~c~~~~stc~ 315 (715)
T PTZ00487 275 --------------------------------------PGVGPFIAAFGQSNEGDVSPNTRGPTCRD-GIPCDYKTSTCN 315 (715)
T ss_pred --------------------------------------CCCCceeEEEccCCcccCCCCCCCCcccc-CCcccccccccC
Confidence 12356999999999999999999999999 999999999999
Q ss_pred CCCcccccCCCCCC-CcchhHHHHHHHHHHHHHHHHhhcCCccccceeEEEEeEecceeEEecCCCCCCCCcccCCcccc
Q 011850 320 GKNEMCYGRGPGYP-DEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCPAAM 398 (476)
Q Consensus 320 g~~~~c~~~gP~~~-d~~est~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~~~~~~~~~~~~~tc~~a~ 398 (476)
||++.|+|+||++. ||||+|+|||+|||++|++||++++++|+|+||+||+||||++++|..+++ +++..++||||||
T Consensus 316 g~~~~c~~~GP~~~~d~~~~t~~iG~rq~~~A~~l~~~~~~~l~G~v~~~h~~~dm~~~~v~~~~~-~~~~~~~tC~aa~ 394 (715)
T PTZ00487 316 GTTEECWGLGPGKDGDMFESTQIIGGNQFNKALELFNNASIQVSGPIQYRHTWLNFTNVSVEPPYN-SGVQVATTCRGAM 394 (715)
T ss_pred CcccceeccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCcccccccceEEEEEeccccEeccccC-CCCCcceeccccc
Confidence 99999999999977 799999999999999999999999999999999999999999999975443 5668999999999
Q ss_pred cccccccCCCCCCCcCccCCCCC--CCchHHhhhhccCCCCHhhhhccCCCcceecCCCCCCCCccccccccc----ccc
Q 011850 399 GFAFAAGTTDGPGAFDFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWASLRQWL----GGD 472 (476)
Q Consensus 399 G~sfaaGt~DGpg~~~f~qg~~~--~~p~w~~~~~~~~~p~~~~~~cq~pKpill~~G~~~~p~~w~p~~~~~----~~~ 472 (476)
|||||||||||||.|+|+||++. +||||+.+++++++|+++|++||+||||||++| +..||||+|+|+++ ||+
T Consensus 395 G~sfaAGt~DGpg~f~f~qg~~~~~~~p~w~~~~~~~~~p~~~~~~cq~pKpiLl~~G-~~~p~~w~p~iv~iQi~riG~ 473 (715)
T PTZ00487 395 GYSFAAGTTDGPGAFNFKQGDNSTKGNPFWNFIGSFIAKPTPEQILCQSPKPILLDVG-MVEPIPWVPDVMPIQIMTIGQ 473 (715)
T ss_pred CcccccccCCCCCCccccCCCCCcCCCcHHHHHhhhccCCChHHhcccCCCceeecCC-CCCCCCCcCceeeeEEEEEee
Confidence 99999999999999999999876 689999999999999999999999999999999 66799999999999 999
Q ss_pred cccC
Q 011850 473 FVML 476 (476)
Q Consensus 473 ~~~~ 476 (476)
|+|+
T Consensus 474 l~i~ 477 (715)
T PTZ00487 474 IVLV 477 (715)
T ss_pred EEEE
Confidence 9875
No 4
>COG3356 Predicted membrane protein [Function unknown]
Probab=97.73 E-value=0.00026 Score=77.09 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=92.0
Q ss_pred CCccCCCC---CccceeecceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 011850 1 MMGYANME---QIASGIHFRLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (476)
Q Consensus 1 M~GYa~~~---q~a~GihdrL~ARA~Vl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS 77 (476)
++||+... +...|+ -+..+||++++. +++|.++|.+|.=.+..+++++|++++.+ + .+++.+..|-||.
T Consensus 413 rvG~ar~~~~~~~~~Gl-g~~Gi~a~v~d~-g~~Rta~Vl~DsNNi~~~L~~~v~~~v~~-----l-v~~veV~TTDtH~ 484 (578)
T COG3356 413 RVGYARGKPLVDAEDGL-GPGGIRAAVVDT-GDTRTAYVLFDSNNITTELREEVRKAVRD-----L-VSEVEVVTTDTHY 484 (578)
T ss_pred cceeeccCCCCCCCCCc-CcCceEEEEEec-CCeEEEEEEEeCCCCcHHHHHHHHHHHHh-----h-hcEEEEEecCCce
Confidence 57888632 344454 468999999999 79999999999999999999999998887 3 6889999999999
Q ss_pred CCC-CCccchhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 011850 78 GPG-GYLQYVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (476)
Q Consensus 78 gPg-G~~~~~l~~it~~Gf~~~y~~~lvdgIv~AI~~A~~nl~Pa~l~~g~g~~~ 131 (476)
--+ .... | ...|.. +-...|.+.+++++++|.++++|++++..+.+..
T Consensus 485 vn~~~~~~---~--~pvg~r-~d~~~I~~~v~~~v~~A~~dle~ve~g~~~v~v~ 533 (578)
T COG3356 485 VNGRLVLG---Y--NPVGSR-EDLGEIADEVAKAVEEAEKDLEPVEVGVRTVKVK 533 (578)
T ss_pred eccccccc---c--cccccc-ccHHHHHHHHHHHHHHHHhccccceeEEEEEEEE
Confidence 554 3221 1 122333 3456799999999999999999999988888774
No 5
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=97.59 E-value=0.00069 Score=64.30 Aligned_cols=116 Identities=20% Similarity=0.151 Sum_probs=86.9
Q ss_pred CccCCCCCccceeec---ceEEEEEEEEeCCCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCC
Q 011850 2 MGYANMEQIASGIHF---RLRARTFIVAEPQGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAG 78 (476)
Q Consensus 2 ~GYa~~~q~a~Gihd---rL~ARA~Vl~d~~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSg 78 (476)
.||+... +.-+-|+ +.-.+|++++. +++|.++|.+|---+.+.++++|++++.+. .+.+.|..|.||+-
T Consensus 43 ~G~~~~~-~~~~~~~~lg~~gi~~~~v~~-~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~------~d~~ev~TTDtH~~ 114 (179)
T PF09843_consen 43 VGYAEAE-PFLGEHEGLGIGGISALVVEV-GGQRSALVLADSNNMEPGLREKIREALGDV------VDEVEVMTTDTHFV 114 (179)
T ss_pred cceEecc-CCCCCCCCcCccccEEEEEEe-CCcEEEEEEEECCCCCHHHHHHHHHHHhhh------cceeEEecCcccEE
Confidence 4666432 2344443 45689999999 799999999999999999999999888773 57799999999996
Q ss_pred CCCCcc--chhhhccccccchhHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEec
Q 011850 79 PGGYLQ--YVVYIVTSLGFVRQSFDALVDGIEKSVLQAHENLRPGSIFVNKGELL 131 (476)
Q Consensus 79 PgG~~~--~~l~~it~~Gf~~~y~~~lvdgIv~AI~~A~~nl~Pa~l~~g~g~~~ 131 (476)
-+-... |+.+.. . --.+.+.+.+.+++.+|.++++|+++++.+..+.
T Consensus 115 ~~~~~g~~y~~vG~-----~-~~~~~i~~~~~~~~~~A~~~l~~v~~~~~~~~~~ 163 (179)
T PF09843_consen 115 NGESGGNGYWPVGP-----L-IPPREIIESRREAVSEAERDLEPVEVGYKEVYVK 163 (179)
T ss_pred ccEECCccceeccc-----c-CCHHHHHHHHHHHHHHHHhcccccEEEEEEEEEE
Confidence 542211 222211 0 0345788889999999999999999999998863
No 6
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=59.29 E-value=20 Score=30.15 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 011850 44 SQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (476)
Q Consensus 44 ~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (476)
+..-+.+|+++|++.++ .+.++|+|-.-+||-|=+
T Consensus 11 ~Tpsr~ei~~klA~~~~--~~~~~ivv~~~~t~fG~~ 45 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLN--VDPDLIVVFGIKTEFGGG 45 (84)
T ss_dssp SS--HHHHHHHHHHHHT--STGCCEEEEEEEESSSSS
T ss_pred CCCCHHHHHHHHHHHhC--CCCCeEEEeccEecCCCc
Confidence 34458999999999999 899999999999999876
No 7
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=56.88 E-value=29 Score=30.27 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=37.4
Q ss_pred EEEEeCCCCEEEEEEeccCc-ccH----HHHHHHHHHHHHHhCCCCCCCcEEEEeecc
Q 011850 23 FIVAEPQGNRVVFVNLDACM-ASQ----IVKIKVIERLKARYGDLYTEKNVAISGIHT 75 (476)
Q Consensus 23 ~Vl~d~~~~rvv~Vs~Dl~~-i~~----~v~~~V~~~L~~~~G~~i~~~nVlIsATHT 75 (476)
|++.. ....++||.+.+++ ... .+..+|-+.|++.+| +++++|+|.-+=.
T Consensus 49 m~f~g-~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lg--i~~~rv~I~f~~~ 103 (116)
T PTZ00397 49 MRFGG-SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLK--VKSERVYIEFKDC 103 (116)
T ss_pred EEECC-CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhC--cCcccEEEEEEEC
Confidence 44443 46699999999655 443 467777888889999 9999999987543
No 8
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=41.36 E-value=35 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCEEEEEEeccC-ccc----HHHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 011850 30 GNRVVFVNLDAC-MAS----QIVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (476)
Q Consensus 30 ~~rvv~Vs~Dl~-~i~----~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTH 76 (476)
...+++|.+.+. +=+ +.+...+.++|+++.| |++++|+|+-+-++
T Consensus 26 s~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g--i~p~Dv~I~l~e~~ 75 (82)
T PF14552_consen 26 SDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG--IRPEDVMIVLVENP 75 (82)
T ss_dssp -TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEEE-
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC--CCHHHEEEEEEECC
Confidence 567888888887 323 3456777888888899 99999999988775
No 9
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=36.75 E-value=1.8e+02 Score=33.87 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCCEEEEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCCCCccchhhhcc-ccccchhHHHHHHHHH
Q 011850 29 QGNRVVFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVT-SLGFVRQSFDALVDGI 107 (476)
Q Consensus 29 ~~~rvv~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPgG~~~~~l~~it-~~Gf~~~y~~~lvdgI 107 (476)
+++-.+-|.+-..-+.|.....+.+.+++.+| ++.++|-|...-|...|.+...+---... .......--+.|.+++
T Consensus 475 dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LG--ip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl 552 (768)
T TIGR03196 475 DGTVKIRAHFACAECGQGFLAAAEQIAMEELG--CAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQL 552 (768)
T ss_pred CCCeEEEEEECCCCcCCCHHHHHHHHHHHHhC--CCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Confidence 35435556666677777788889999999999 99999999999998888533211000000 1113445556677777
Q ss_pred HHHHHHHHhcCCceEEEEEEEEe
Q 011850 108 EKSVLQAHENLRPGSIFVNKGEL 130 (476)
Q Consensus 108 v~AI~~A~~nl~Pa~l~~g~g~~ 130 (476)
.+...+.+ ...|..+.+..+.+
T Consensus 553 ~~~aa~~l-~~~~~~~~~~~g~~ 574 (768)
T TIGR03196 553 KARAAETA-GLPAEVVEAPAENL 574 (768)
T ss_pred HHHHHHHh-CCChhhEEEeCCee
Confidence 65543322 34444455555544
No 10
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.64 E-value=18 Score=31.50 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=21.1
Q ss_pred ecCCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCcccccCCCCCC
Q 011850 288 CQSNCGDVSPNVLGAFCIDSGLPCDFNHSTCGGKNEMCYGRGPGYP 333 (476)
Q Consensus 288 ~qsn~GDvsPN~~g~~c~d~g~~c~~~~s~c~g~~~~c~~~gP~~~ 333 (476)
+++|.||+.|=-.| -.|+.+-.||||+
T Consensus 36 ~~GN~GD~kpvgeG-------------------V~ELRId~GpGyR 62 (100)
T COG3657 36 ALGNFGDVKPVGEG-------------------VSELRIDHGPGYR 62 (100)
T ss_pred hcCCCcCccccccc-------------------hhhheeccCCceE
Confidence 68999999985443 4578888999974
No 11
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=31.50 E-value=79 Score=26.10 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccccceeEEEEeEecceeEEe
Q 011850 338 STRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVT 380 (476)
Q Consensus 338 st~iig~~q~~~A~~l~~~~~~~l~g~v~~~~~~vdm~~~~v~ 380 (476)
-+-+||.-|..+|++++...++.+.|. ..++|.-+.+++
T Consensus 29 ~~giigslqA~eaik~l~g~~~~l~~~----l~~~D~~~~~~~ 67 (84)
T PF05237_consen 29 VVGIIGSLQANEAIKLLLGIGEPLSGK----LLTIDLLNMSFR 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHCT-S---BTE----EEEEETTTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHhcCCchhhh----eeeEECCCCeEE
Confidence 567899999999999998777777774 467777665554
No 12
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=31.00 E-value=1.3e+02 Score=27.87 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=31.4
Q ss_pred eEEEEEEEEeCCCCEEEEEEeccC---cccHHHHHHHHHHHHHHhCCCCCC-CcEEEEee
Q 011850 18 LRARTFIVAEPQGNRVVFVNLDAC---MASQIVKIKVIERLKARYGDLYTE-KNVAISGI 73 (476)
Q Consensus 18 L~ARA~Vl~d~~~~rvv~Vs~Dl~---~i~~~v~~~V~~~L~~~~G~~i~~-~nVlIsAT 73 (476)
-.|+++|.++ -+||.+++- .....+..+|+++|++. +|. .+|.||+=
T Consensus 91 ~~A~vvv~~~-----~a~Vav~~~~~~~~~~~i~~~V~~~v~~~----~p~~~~V~Vs~D 141 (177)
T PF09580_consen 91 EDATVVVTDD-----NAYVAVDLDFNRFNTKKIKKKVEKAVKSA----DPRIYNVYVSTD 141 (177)
T ss_pred eEEEEEEECC-----EEEEEEEecccccchhHHHHHHHHHHHHh----CCCccEEEEEcC
Confidence 3577777765 567777776 45556667777777664 445 79999863
No 13
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=28.45 E-value=1.3e+02 Score=26.54 Aligned_cols=49 Identities=6% Similarity=0.148 Sum_probs=37.4
Q ss_pred EEEEeCCCCEEEEEEeccCcc-cH----HHHHHHHHHHHHHhCCCCCCCcEEEEeec
Q 011850 23 FIVAEPQGNRVVFVNLDACMA-SQ----IVKIKVIERLKARYGDLYTEKNVAISGIH 74 (476)
Q Consensus 23 ~Vl~d~~~~rvv~Vs~Dl~~i-~~----~v~~~V~~~L~~~~G~~i~~~nVlIsATH 74 (476)
+.+.. .....+||.+-.++. .. .+...+-+.|++++| |+.++|.|.-.=
T Consensus 49 m~fgG-s~~P~A~~~l~siG~~~~~~n~~~s~~i~~~l~~~Lg--Ip~dRiYI~f~d 102 (113)
T PTZ00450 49 MSFQG-STAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECG--IPAERIYVFYYS 102 (113)
T ss_pred EEEcC-CCCCEEEEEEEEecCcCHHHHHHHHHHHHHHHHHHcC--CCcccEEEEEEc
Confidence 34443 456899999988874 33 456777788889999 999999998764
No 14
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=27.90 E-value=1.1e+02 Score=26.65 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=35.3
Q ss_pred EEEEeccCcccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 011850 34 VFVNLDACMASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (476)
Q Consensus 34 v~Vs~Dl~~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (476)
+.+.+--.+-...-+.+|+++|++.++ -+.+.|+|-.-.|+-|-+
T Consensus 19 ~~~~v~h~g~~tpsr~eirekLa~~~~--~~~~~vvv~~~~t~fG~g 63 (99)
T PRK01178 19 IKFEVYHEGSATPSRKDVRKKLAAMLN--ADKELVVVRKIKTEYGMG 63 (99)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHC--cCCCEEEEEccCccCCCc
Confidence 334444444334447999999999999 899999999999999886
No 15
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=25.47 E-value=4.3e+02 Score=24.47 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=26.9
Q ss_pred EEEEeccC------cccHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 011850 34 VFVNLDAC------MASQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (476)
Q Consensus 34 v~Vs~Dl~------~i~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (476)
++|-+|.. ++..+-..++.+++++ . +|+-|.+-|||.|..
T Consensus 109 v~lrv~~g~~~~R~G~~~~e~~~~~~~i~~-----~--~~l~l~Gl~~H~~~~ 154 (211)
T cd06808 109 VLLRIDTGDENGKFGVRPEELKALLERAKE-----L--PHLRLVGLHTHFGSA 154 (211)
T ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHh-----C--CCCcEEEEEEecCCC
Confidence 56777776 5555444555555544 2 378999999999876
No 16
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=20.97 E-value=1.4e+02 Score=27.18 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCC
Q 011850 44 SQIVKIKVIERLKARYGDLYTEKNVAISGIHTHAGPG 80 (476)
Q Consensus 44 ~~~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPg 80 (476)
+..-..+|+++|++.|. ...++|++-+--||-|-+
T Consensus 33 a~vsK~EirEKla~mYk--t~~d~V~vfgfrt~~Ggg 67 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYK--TTPDAVFVFGFRTHFGGG 67 (132)
T ss_pred CCCCHHHHHHHHHHHhc--CCcceEEEEEeeeccCCc
Confidence 33347899999999999 899999999999999887
No 17
>PF15601 Imm42: Immunity protein 42
Probab=20.95 E-value=2.6e+02 Score=25.76 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEeeccCCCCCCCccchhhhccccccchhHH-----HHHHHHHHHHHHHHHhcCCceE
Q 011850 48 KIKVIERLKARYGDLYTEKNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSF-----DALVDGIEKSVLQAHENLRPGS 122 (476)
Q Consensus 48 ~~~V~~~L~~~~G~~i~~~nVlIsATHTHSgPgG~~~~~l~~it~~Gf~~~y~-----~~lvdgIv~AI~~A~~nl~Pa~ 122 (476)
..+|++.+++ ++++.|+.-.-.-..-|. |...+-.+++++ .+|| +.+.+.+.+|+..|.+.-.++.
T Consensus 62 L~~I~~~l~~-----~~p~~ViWD~~dl~~~pp-Wg~~i~~~i~~L---~~yFvt~dG~~~f~~l~~a~~~a~~~~~~v~ 132 (134)
T PF15601_consen 62 LEEIRKELKK-----FPPSEVIWDIEDLSKQPP-WGDNISPDITSL---SDYFVTSDGKDLFEVLFRALESAIEEKVDVV 132 (134)
T ss_pred HHHHHHHHhc-----CChhhheechhhcccCCC-CcccCCCCCCcH---HHHhcCcchhhHHHHHHHHHHHHHhcCCCee
Confidence 3445555544 788888866655544444 433344455543 3555 6677778888888877766665
Q ss_pred E
Q 011850 123 I 123 (476)
Q Consensus 123 l 123 (476)
|
T Consensus 133 I 133 (134)
T PF15601_consen 133 I 133 (134)
T ss_pred e
Confidence 4
No 18
>PRK00111 hypothetical protein; Provisional
Probab=20.58 E-value=1.9e+02 Score=27.97 Aligned_cols=54 Identities=9% Similarity=0.249 Sum_probs=41.7
Q ss_pred EEEEEEEEeCCCCEEEEEEeccCcccHHH---HHHHHHHHHHHhCCCCCCCcEEEEeeccCC
Q 011850 19 RARTFIVAEPQGNRVVFVNLDACMASQIV---KIKVIERLKARYGDLYTEKNVAISGIHTHA 77 (476)
Q Consensus 19 ~ARA~Vl~d~~~~rvv~Vs~Dl~~i~~~v---~~~V~~~L~~~~G~~i~~~nVlIsATHTHS 77 (476)
+++.+-|.+ .+++|.+|...+.+++ ..+|.++|.+++|. -....|.|.+-++||
T Consensus 106 hT~p~~ikd----gvL~V~~sSsAWAtEL~~~r~~Il~rLNe~LG~-~vV~dIri~GP~~ps 162 (180)
T PRK00111 106 HTKVEMIKD----KKLFITCDSTAWATNLRMMQRQILQVIAEKVGP-DIITELRIFGPQAPS 162 (180)
T ss_pred hcCceEEEC----CEEEEEeCCHHHHHHHHhHHHHHHHHHHHHcCc-CceeEEEEECCCCCC
Confidence 455566666 2999999998888887 66788999999883 246788888877776
No 19
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=20.55 E-value=1.5e+02 Score=28.07 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=34.8
Q ss_pred EEEEEeccCcccH-----HHHHHHHHHHHHHhCCCCCCCcEEEEeeccCC-CCC
Q 011850 33 VVFVNLDACMASQ-----IVKIKVIERLKARYGDLYTEKNVAISGIHTHA-GPG 80 (476)
Q Consensus 33 vv~Vs~Dl~~i~~-----~v~~~V~~~L~~~~G~~i~~~nVlIsATHTHS-gPg 80 (476)
+.++++|+..+.+ ..+.++++.|++.++ ++.++|-|.||-|=. |+-
T Consensus 88 ~~i~niD~tii~e~PKi~p~~~~m~~~la~~L~--~~~~~V~iKatT~E~lg~~ 139 (155)
T TIGR00151 88 YRIGNVDITIIAQRPKLLPHIPAMRENIAELLG--IPLDSVNVKATTTEKLGFT 139 (155)
T ss_pred CEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhC--CCcceEEEEEecCCCCCCC
Confidence 4556666665544 368999999999999 999999999996543 443
No 20
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=20.33 E-value=1.5e+02 Score=28.20 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred EEEEEeccCcccH-----HHHHHHHHHHHHHhCCCCCCCcEEEEeeccC
Q 011850 33 VVFVNLDACMASQ-----IVKIKVIERLKARYGDLYTEKNVAISGIHTH 76 (476)
Q Consensus 33 vv~Vs~Dl~~i~~-----~v~~~V~~~L~~~~G~~i~~~nVlIsATHTH 76 (476)
+-++++|+..+.+ ..+.++++.|++.++ ++.++|-|.||-|=
T Consensus 91 ~~i~niD~tii~e~PKi~p~~~~m~~~la~~L~--i~~~~V~iKatT~E 137 (159)
T PRK00084 91 YRIGNVDITIIAQRPKMAPHIEEMRANIAEDLG--IPLDDVNVKATTTE 137 (159)
T ss_pred CEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhC--CCcceEEEEEecCC
Confidence 4556666665544 368999999999999 99999999998654
Done!