BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011852
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1
PE=1 SV=1
Length = 488
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/468 (70%), Positives = 384/468 (82%), Gaps = 5/468 (1%)
Query: 14 RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
R V +L P TK R +RV S+ + +SV PVY PT NRELRTPHS
Sbjct: 21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80
Query: 71 GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG
Sbjct: 81 GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140
Query: 131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQ 190
QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A G++ P KEVPP+EFNRRV EGFQ
Sbjct: 141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQ 200
Query: 191 VTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPH 250
TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPH
Sbjct: 201 ATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPH 260
Query: 251 WQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALT 310
WQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALT
Sbjct: 261 WQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALT 320
Query: 311 AGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMV 369
AGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY AEN+ H+V
Sbjct: 321 AGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVV 380
Query: 370 ELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAA 429
EL+A T GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+ S MAA
Sbjct: 381 ELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAA 440
Query: 430 LEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
+E+GGGPWF TWK T+ TPELL++ L VP+D++ G VPFFKPPGL
Sbjct: 441 VEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488
>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp.
japonica GN=VTE1 PE=2 SV=1
Length = 470
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/423 (70%), Positives = 352/423 (83%), Gaps = 1/423 (0%)
Query: 54 PVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKL 113
PVY PTPR+R LRTPHSGYH+DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+ +
Sbjct: 49 PVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGM 108
Query: 114 SSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPT 173
S L+ HG RFTGVG QILGADDKY+C ++E+S+NFWGSRHELMLGNTF + GS PP
Sbjct: 109 SDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPE 168
Query: 174 KEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSK 233
EVPPQEF+ RVLEGFQVTP+WHQG I DDGR+ + V++ARWEYSTRPVYGWG+V SK
Sbjct: 169 GEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSK 228
Query: 234 QNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWF 293
Q STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++APSYSEKNWG FPRKW+
Sbjct: 229 QKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWY 288
Query: 294 WVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEIS 353
WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G YEFVPW G VSW+I+
Sbjct: 289 WVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIA 348
Query: 354 QWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYD 413
WG+W + EN+ H+VE++ATTK PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R D
Sbjct: 349 PWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRND 408
Query: 414 GTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKP 473
G KGKMILD TS+MAALEVGGGPWFN WK T + E++ + VDV+ LF +PF KP
Sbjct: 409 GGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKP 467
Query: 474 PGL 476
PGL
Sbjct: 468 PGL 470
>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2
SV=1
Length = 474
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/456 (65%), Positives = 366/456 (80%), Gaps = 6/456 (1%)
Query: 26 LLYTKRRHFNRVLVLASSAQTVGG-----VSVNPVYKPTPRNRELRTPHSGYHFDGSTRR 80
L + RRH R +V +++ +V + P+Y PTP++R LRTPHSGYHFDG+ R
Sbjct: 20 LPRSSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARP 79
Query: 81 FFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYM 140
FFEGWYF+VSIPE +QSFC +YSVENP F+ +S L+ + PRFTGVG QILGADDKY+
Sbjct: 80 FFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYI 139
Query: 141 CHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCI 200
C +SE+S+NFWGSRHELMLGNTF ++K S PP EVPPQ+F+RRVLEG QVTP+WHQG I
Sbjct: 140 CQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFI 199
Query: 201 HDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLS 260
DDGR+N+ V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLS
Sbjct: 200 RDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLS 259
Query: 261 TGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPV 320
TGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR++ +
Sbjct: 260 TGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKIGL 319
Query: 321 LDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGT 380
D++E+ ++IGIHY+G +EFVPW G VSW+I WG W + EN+TH+VE++ATT GT
Sbjct: 320 GDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGT 379
Query: 381 TLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNT 440
LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPWFN
Sbjct: 380 ALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNG 439
Query: 441 WKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 476
WK T E++ + PVDV+ L +PF KPPGL
Sbjct: 440 WKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474
>sp|A8IAN5|RPOA_AZOC5 DNA-directed RNA polymerase subunit alpha OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=rpoA PE=3 SV=1
Length = 341
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 285 GGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPW 344
GA P++ V E G +T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 22 AGADPKRLATVVAEPLERGFG---MTLGNSLRRI-LLSSLQGAAVTSVHIDGVLHEFSSI 77
Query: 345 NGV 347
GV
Sbjct: 78 PGV 80
>sp|B0RB25|RPOB_CLAMS DNA-directed RNA polymerase subunit beta OS=Clavibacter
michiganensis subsp. sepedonicus (strain ATCC 33113 /
JCM 9667) GN=rpoB PE=3 SV=1
Length = 1162
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 114 SSLEVAQHGPRFTGVGVQILGA---DDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQ 170
+SL+V HG + T +GV++ + DD+ ++ F + ++ G+ G++
Sbjct: 822 TSLKVP-HGEQGTIIGVKVFDSQDGDDELGSGVNQRVVVFIAQKRKITEGDKLAGRHGNK 880
Query: 171 PPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVK-----SAR--WEYSTRP 223
++ P E + +G V + + I GR NF + ++ SA+ WE +P
Sbjct: 881 GVISKILPVEDMPFLADGTPVDVILNPLGIP--GRMNFGQVLETHLGWSAKQGWEVEGKP 938
Query: 224 VYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERF 271
+ + + AG A PVF+ + +AG L + + DG+R
Sbjct: 939 KWAERLPDHARQAPAGTKVATPVFDGALEEEIAGLLDSTTVTRDGDRL 986
>sp|A7IPP6|RPOA_XANP2 DNA-directed RNA polymerase subunit alpha OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpoA PE=3
SV=1
Length = 338
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 286 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 345
G P+++ V E G +T G LR++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GHDPKRFATVIAEPLERGFG---MTLGNALRRI-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 346 GV 347
GV
Sbjct: 76 GV 77
>sp|A5CUC7|RPOB_CLAM3 DNA-directed RNA polymerase subunit beta OS=Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
GN=rpoB PE=3 SV=1
Length = 1162
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 114 SSLEVAQHGPRFTGVGVQILGA---DDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQ 170
+SL+V HG + T +GV++ + DD+ ++ F + ++ G+ G++
Sbjct: 822 TSLKVP-HGEQGTIIGVKVFDSQDGDDELGSGVNQRVVVFIAQKRKITEGDKLAGRHGNK 880
Query: 171 PPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKS-------ARWEYSTRP 223
++ P E + +G V + + I GR NF + +++ WE +P
Sbjct: 881 GVISKILPVEDMPFLADGTPVDVILNPLGIP--GRMNFGQVLETHLGWIAKQGWEVEGKP 938
Query: 224 VYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERF 271
+ + + AG A PVF+ + +AG L + + DG+R
Sbjct: 939 KWAERLPDHARQAPAGTKVATPVFDGALEEEIAGLLDSTTVTRDGDRL 986
>sp|B8EIT5|RPOA_METSB DNA-directed RNA polymerase subunit alpha OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=rpoA PE=3 SV=1
Length = 338
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 286 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 345
G P+++ + E G LT G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 20 GDDPKRFATIVAGPLELGFG---LTLGNSLRRI-LLSSLQGAAITSVHIDGVLHEFSSIP 75
Query: 346 GV 347
GV
Sbjct: 76 GV 77
>sp|B6IRT0|RPOA_RHOCS DNA-directed RNA polymerase subunit alpha OS=Rhodospirillum
centenum (strain ATCC 51521 / SW) GN=rpoA PE=3 SV=1
Length = 338
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 286 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 345
G+ P++ + E G LT G +R++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GSDPKREATIVAGPLERGFG---LTLGNAIRRV-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 346 GV 347
GV
Sbjct: 76 GV 77
>sp|B2IF96|RPOA_BEII9 DNA-directed RNA polymerase subunit alpha OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=rpoA PE=3 SV=1
Length = 338
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 309 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 347
LT G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 40 LTLGNALRRI-LLSSLQGAAITSVHIDGVLHEFSSIPGV 77
>sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha OS=Maricaulis maris
(strain MCS10) GN=rpoA PE=3 SV=1
Length = 339
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 309 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 347
+T G LR++ +L S + AA+ +H DG+++EF +GV
Sbjct: 40 MTLGNALRRV-LLSSLQGAAVTNVHIDGVVHEFSSIDGV 77
>sp|Q89JA7|RPOA_BRAJA DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rpoA PE=3 SV=1
Length = 343
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 286 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 345
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 25 GSDPARFATIVAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 80
Query: 346 GV 347
GV
Sbjct: 81 GV 82
>sp|Q4FLP1|RPOA_PELUB DNA-directed RNA polymerase subunit alpha OS=Pelagibacter ubique
(strain HTCC1062) GN=rpoA PE=3 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 309 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 347
LT G LR++ +L S AA+ I DG+L+EF GV
Sbjct: 44 LTLGNSLRRI-LLSSIRGAAVTSIQIDGVLHEFTSIKGV 81
>sp|B8IT35|RPOA_METNO DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 286 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 345
G P++ V E G T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GHDPKRIATVVAEPLERGFGT---TLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIP 76
Query: 346 GV 347
GV
Sbjct: 77 GV 78
>sp|Q0BYD8|RPOA_HYPNA DNA-directed RNA polymerase subunit alpha OS=Hyphomonas neptunium
(strain ATCC 15444) GN=rpoA PE=3 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 310 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 347
T G LR++ +L S + AA+IG+ DG+++EF GV
Sbjct: 44 TLGNALRRV-LLSSLQGAAIIGVQIDGVVHEFSAIPGV 80
>sp|B0UHU5|RPOA_METS4 DNA-directed RNA polymerase subunit alpha OS=Methylobacterium sp.
(strain 4-46) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 310 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 347
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIPGV 78
>sp|Q5GSW7|RPOA_WOLTR DNA-directed RNA polymerase subunit alpha OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=rpoA PE=3 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 299 VFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 347
V E ALT G LR++ +L S +A+ GI DGI +EF GV
Sbjct: 36 VLEPLESGFALTLGNALRRV-MLSSLIGSAVYGIKIDGITHEFTSIQGV 83
>sp|Q9RBW3|HPAB1_PSESH Effector protein hopAB1 OS=Pseudomonas syringae pv. phaseolicola
GN=hopAB1 PE=2 SV=1
Length = 539
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 445 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 496
>sp|Q48B61|HPAB1_PSE14 Effector protein hopAB1 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=hopAB1 PE=1 SV=1
Length = 539
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 445 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 496
>sp|Q8RK09|HPAB1_PSESS Effector protein hopAB1 OS=Pseudomonas syringae pv. savastanoi
GN=hopAB1 PE=3 SV=1
Length = 541
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 447 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 498
>sp|Q8RK12|HPAB1_PSESG Effector protein hopAB1 OS=Pseudomonas syringae pv. glycinea
GN=hopAB1 PE=3 SV=1
Length = 523
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 429 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,268,669
Number of Sequences: 539616
Number of extensions: 8851860
Number of successful extensions: 15500
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15492
Number of HSP's gapped (non-prelim): 22
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)