Query 011852
Match_columns 476
No_of_seqs 146 out of 177
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02818 tocopherol cyclase 100.0 2E-130 5E-135 1003.7 38.4 401 64-465 1-403 (403)
2 PF14249 Tocopherol_cycl: Toco 100.0 9E-100 2E-104 772.0 35.4 333 78-434 1-336 (336)
3 PF07143 CrtC: Hydroxyneurospo 97.9 0.0012 2.7E-08 66.9 19.2 55 255-312 146-204 (312)
4 PF10974 DUF2804: Protein of u 94.0 0.53 1.2E-05 48.8 11.3 104 260-374 173-283 (333)
5 COG5621 Predicted secreted hyd 86.1 48 0.001 34.8 20.2 204 51-310 34-256 (354)
6 PF08622 Svf1: Svf1-like; Int 51.5 17 0.00037 38.2 3.9 19 259-277 138-156 (325)
7 PF06523 DUF1106: Protein of u 26.5 44 0.00096 27.9 1.8 26 71-105 8-33 (91)
8 PF10974 DUF2804: Protein of u 23.7 4.9E+02 0.011 27.0 9.4 80 356-442 121-209 (333)
9 TIGR02543 List_Bact_rpt Lister 12.3 97 0.0021 23.0 0.7 20 81-103 7-27 (44)
10 PF05720 Dicty_CAD: Cell-cell 12.3 2E+02 0.0042 24.6 2.6 23 260-282 49-71 (82)
No 1
>PLN02818 tocopherol cyclase
Probab=100.00 E-value=2.4e-130 Score=1003.74 Aligned_cols=401 Identities=70% Similarity=1.347 Sum_probs=392.1
Q ss_pred CccCCCcccccCCCCCCceeeEEEEEecCCCCeEEEEEEEeecCCcccccchhhhhccCCccccceEEEEccCCeEEEEc
Q 011852 64 ELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHY 143 (476)
Q Consensus 64 ~~~tPhsgyhg~g~~~~fFEGWYfKv~~p~~~~sfA~I~sI~~p~g~~~~~af~~~~~~~~~~g~~iQVl~~~~~y~~~y 143 (476)
+++||||||||||++|||||||||||++|+.+|||||||||+||.+++++++++++++|++++|+++|||+++|+|+||+
T Consensus 1 ~~~tPHsGyh~dg~~rrFfEGWy~rvtlpe~~qsf~fmysiedp~~~~~~~~~~~~~~~~~~~g~~aQilg~~d~y~~~~ 80 (403)
T PLN02818 1 ALRTPHSGYHFDGTPRRFFEGWYFKVSLPEVKQSFAFMYSIEDPAFRERMSGLEELLHGSRFTGVGAQILGPDDKYLCQF 80 (403)
T ss_pred CCcCCCCCcccCCCCcCcccceEEEEEcCCCCceEEEEEEeeCCccccccccchhhcCCCCCCCceeeeecCCCceEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCceEEeCceeecCCCCCCCCCCCCchhhhcccccceeccceeeeeeEecCCCCcccccccccceeeeccc
Q 011852 144 SEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRP 223 (476)
Q Consensus 144 ~~~~~~F~~~~~~l~IG~~~~s~~~~~~~~~~l~~~~f~~~v~~g~q~~~~~~qG~l~~~~~~~~~~~~~~~~W~~~i~p 223 (476)
++|+.+||+++++|.|||++..+.....++++|+|+||+++|+||||+|+++|||.|+|+++++|.++++++||+|+|+|
T Consensus 81 ~~~~~~Fw~~~~~l~lg~~~~~~~~~~~~~~~~~p~~f~~~v~~G~q~t~~~~qG~i~d~~~~~~~~~~~~~rw~y~~~p 160 (403)
T PLN02818 81 TEDSTKFWGSRHELALGNTFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRP 160 (403)
T ss_pred CCCcccccccchhcccccccccccCCCCCcccCChHHHHHhhhcceeeccceecceecCCCCCccccccceEEEEEEeee
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcCCcccccCCCCCCCCCCcEEEEeccCCCC
Q 011852 224 VYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGA 303 (476)
Q Consensus 224 ~~gwG~~~~~~~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sFP~~w~W~Qcn~Fd~~ 303 (476)
+||||+++++|++|||||++||+|||||||+|+|++++|+|+|||++|+|++++||+|||||+|||++|+|+|||+|+++
T Consensus 161 ~~gwG~~~~~~~stmGwfs~lP~fEp~wqVlmahg~asG~I~wnG~~yeF~~apgY~EKNWG~sFP~kWfWiQCN~F~~~ 240 (403)
T PLN02818 161 VYGWGDVGSKQKSTAGWLAALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFPSKWFWVQCNVFDGA 240 (403)
T ss_pred eeecCCCCCCCCCccchhhhcccccCcceeeecCcEEEEEEEECCEEEEecCCCeeeEccCCCCCCcCeeeEecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEcccccccCcc-ccccceEEEEEEECCEEEEEecCCcceEEEEeeeeeEEEEEEeCcEEEEEEEEe-cCCCce
Q 011852 304 TGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTT 381 (476)
Q Consensus 304 ~~~~sLt~AGg~~~IP~l-~~f~~~~lIgl~~~Gk~yrFaty~gs~~~~v~~~g~w~i~~~~~~~~Lei~~~~-~~~g~~ 381 (476)
++ +||+|+||+|+||++ .+|++++||+||++|++|||+||+|++.|+|++|++|+|+++|++|+|+|+++| +.+++.
T Consensus 241 ~~-LalTagGg~r~IP~l~~~fe~v~ligvh~~GkfYrFap~~g~v~w~v~pwg~W~i~a~n~~~~veIe~~~~~~~g~~ 319 (403)
T PLN02818 241 SG-LSLTAGGGLRGLPLLPGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTV 319 (403)
T ss_pred Cc-EEEEecCCcccCccccccccceEEEEEEECCEEEEEEeecceEEEEEccCCcEEEEEECCCEEEEEEEEEcCCCCce
Confidence 98 999999999999998 899999999999999999999999999999999999999999999999999999 668899
Q ss_pred EeCCCCCCCcccceeecccEEEEEEEEeccccCCCCeEEEEEeeceeEEeeeCCcccccccccccchHHHhhhcccceec
Q 011852 382 LRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDV 461 (476)
Q Consensus 382 L~AP~~g~~m~~~c~ES~~g~i~v~L~~k~~~~~~g~lI~d~~s~~AglEiGG~pw~~~w~~~~~~~~~~~~~~~~~~~~ 461 (476)
|+||+.+++|++.|+||+.|+++|+||++.+++.++++|+|++|++||||+||+||+++|+++++|+|||++||++||||
T Consensus 320 LrAPt~~~gM~~~crESl~G~l~l~L~~~~~~~~~gk~I~d~~S~~AGLEvGGgpW~~~W~~~~~~~~~~~~~~~~p~d~ 399 (403)
T PLN02818 320 LRAPTTDVGLAPFCRDTFAGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDV 399 (403)
T ss_pred EECCCCCCCCCchhhhcCCceEEEEEEecccCCCCCcEEEEeccCceeEEecCCcCcccccccccchhhHHHHhCCccch
Confidence 99999886799999999999999999998777888899999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011852 462 DGLF 465 (476)
Q Consensus 462 ~~~~ 465 (476)
|+|+
T Consensus 400 ~~~~ 403 (403)
T PLN02818 400 ESIF 403 (403)
T ss_pred hhcC
Confidence 9985
No 2
>PF14249 Tocopherol_cycl: Tocopherol cyclase
Probab=100.00 E-value=9.2e-100 Score=771.96 Aligned_cols=333 Identities=53% Similarity=1.100 Sum_probs=315.2
Q ss_pred CCCceeeEEEEEecCCCCeEEEEEEEeecCCcccccchhhhhccCCccccceEEEEccCCeEEEEcCccccccccCCceE
Q 011852 78 TRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHEL 157 (476)
Q Consensus 78 ~~~fFEGWYfKv~~p~~~~sfA~I~sI~~p~g~~~~~af~~~~~~~~~~g~~iQVl~~~~~y~~~y~~~~~~F~~~~~~l 157 (476)
+|||||||||||++|+.+|||||||||+||.++++ ++|+++|||+++|+|+||+++++.+||++++++
T Consensus 1 ~~~ffEGWy~rvtlp~~~~sf~~mysi~dp~~~~~------------~~g~~aqilg~~d~y~~~~~~~~~~fw~~~~~~ 68 (336)
T PF14249_consen 1 SRRFFEGWYFRVTLPEIGQSFAFMYSIEDPIGGQP------------YSGGAAQILGPDDKYLCRTFPDVQKFWASRHEL 68 (336)
T ss_pred CCccccceEEEEEcCCCCcEEEEEEEEEcCCCCCC------------cCCceeEEecCCCeEEEEECCCCCceEEecccc
Confidence 58999999999999999999999999999999777 899999999999999999999999999999999
Q ss_pred EeCceeecC---CCCCCCCCCCCchhhhcccccceeccceeeeeeEecCCCCcccccccccceeeecccccccCCCCCCC
Q 011852 158 MLGNTFRAD---KGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQ 234 (476)
Q Consensus 158 ~IG~~~~s~---~~~~~~~~~l~~~~f~~~v~~g~q~~~~~~qG~l~~~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~ 234 (476)
.||+.+... +.+..++++|+|++|+++|+||||+|+++|||.|.|+++.++| +|+|+|+|+++||+++++|
T Consensus 69 ~lg~~~~~~~~~~~~~~~~~~~~p~~f~~~v~~g~q~t~~~~qg~~~~~~~~~~~------~w~y~i~p~~~wg~~~~~~ 142 (336)
T PF14249_consen 69 ALGNLFLGHWGKTDLKPPPGYLPPQEFERRVQEGYQVTATWNQGIIRDPGTGKTC------RWDYSIKPIYGWGNSGRLQ 142 (336)
T ss_pred ccCceeeeecccCCCCCCccccChHHhHhhhhccceeccccccCCccCCCCccEE------EEEEEEcccccCCCccccC
Confidence 999888887 5666689999999999999999999999999999998876655 8999999999999999999
Q ss_pred CCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcCCcccccCCCCCCCCCCcEEEEeccCCCCCcceEEEEccc
Q 011852 235 NSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGG 314 (476)
Q Consensus 235 ~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sFP~~w~W~Qcn~Fd~~~~~~sLt~AGg 314 (476)
++|||||++||+|||||||+|+|++++|+|+|||++|+|++|+||+|||||++||++|+|+|||+|+++++ ++|+++||
T Consensus 143 ~~~mGwfs~lP~~Ec~w~V~~~~g~asG~i~~nG~~~~F~~g~gY~EKNWG~sFP~~W~W~QcN~F~~~~~-~slt~sgg 221 (336)
T PF14249_consen 143 KSIMGWFSFLPFFECYWQVLMAHGLASGWIEWNGKRYDFTGGPGYIEKNWGGSFPSKWFWIQCNSFDGEPD-VSLTASGG 221 (336)
T ss_pred CCccchHhhccccCCCchheecCcEEEEEEEECCEEEEECCCceeeccccCcCCCCCcEEEEccccCCCCC-eEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875 99999999
Q ss_pred ccccCccccccceEEEEEEECCEEEEEecCCcceEEEEeeeeeEEEEEEeCcEEEEEEEEecCCCceEeCCCCCCCcccc
Q 011852 315 LRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPA 394 (476)
Q Consensus 315 ~~~IP~l~~f~~~~lIgl~~~Gk~yrFaty~gs~~~~v~~~g~w~i~~~~~~~~Lei~~~~~~~g~~L~AP~~g~~m~~~ 394 (476)
+++||++ .+.++|||||++|++|||+||++.+.|+|++|++|+|+++|++|+|+|+++++.+++.|+||+.+ +|++.
T Consensus 222 ~~~i~~~--~e~~~ligi~~~Gk~YrF~p~n~~v~~~V~~~g~w~i~~~n~~~~lei~~~~~~~g~~L~AP~~~-~m~~~ 298 (336)
T PF14249_consen 222 RRPIPGL--TESVGLIGIHYDGKFYRFAPYNSKVSWQVDPWGRWRIRARNRKYELEIEATTDSPGTPLRAPTEG-GMQPR 298 (336)
T ss_pred ccccCcc--ccccEEEEEEECCEEEEEEcccceEEEEEeeCceEEEEEECCCEEEEEEEEECCCCcEEeCcCCC-CCchh
Confidence 9999876 34589999999999999999999999999999999999999999999999998778999999988 89999
Q ss_pred eeecccEEEEEEEEeccccCCCCeEEEEEeeceeEEeeeC
Q 011852 395 CKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG 434 (476)
Q Consensus 395 c~ES~~g~i~v~L~~k~~~~~~g~lI~d~~s~~AglEiGG 434 (476)
|+||+.|+++|+|++++ ++++++|++++|++||||+||
T Consensus 299 ~rEsl~g~v~v~L~~~~--~~~g~lI~~~~s~~AGLEvGG 336 (336)
T PF14249_consen 299 CRESLQGRVRVELWEKK--GKKGKLIFDGTSNLAGLEVGG 336 (336)
T ss_pred hhccCcEEEEEEEEECc--CCCCcEEEEeecCcEEEeecC
Confidence 99999999999999954 455899999999999999997
No 3
>PF07143 CrtC: Hydroxyneurosporene synthase (CrtC); InterPro: IPR010791 This family consists of several purple photosynthetic bacterial hydroxyneurosporene synthase (CrtC) proteins. The enzyme catalyses the conversion of various acyclic carotenes including 1-hydroxy derivatives. This broad substrate specificity reflects the participation of CrtC in 1'-HO-spheroidene and in spirilloxanthin biosynthesis [].; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0016117 carotenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2ICH_B.
Probab=97.88 E-value=0.0012 Score=66.88 Aligned_cols=55 Identities=20% Similarity=0.438 Sum_probs=41.7
Q ss_pred ecCccEEEEEEECCEEEEEcCCcccccCCCCCCC--CC--CcEEEEeccCCCCCcceEEEEc
Q 011852 255 MAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF--PR--KWFWVQCNVFEGATGEVALTAG 312 (476)
Q Consensus 255 m~h~lasG~I~~nG~~~dF~~g~GYiEKNWG~sF--P~--~w~W~Qcn~Fd~~~~~~sLt~A 312 (476)
+.+..++|+|+++|+.+.++ |.||.+||||+.. +. .|-|.+...-++. ++|+...
T Consensus 146 ~P~~~v~Gtl~i~g~~~~V~-G~aw~Dh~WG~~~l~~~~~gW~W~~l~l~dg~--~l~~y~~ 204 (312)
T PF07143_consen 146 APRLRVSGTLTIDGKTIQVT-GTAWFDHQWGSFPLAPGQSGWDWFRLQLDDGR--ELMLYQL 204 (312)
T ss_dssp EEEEEEEEEEEETTEEEEEE-EEEEEEEEEESS-S-TTEEEEEEEEEEETTS---EEEEEEE
T ss_pred cccEEEEEEEEECCEEEEEe-eeEEEEEcccCccCccCCCccEEEEEECCCCC--EEEEEEE
Confidence 66667899999999999999 8999999999854 23 4999999644433 2555444
No 4
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=93.96 E-value=0.53 Score=48.85 Aligned_cols=104 Identities=15% Similarity=0.380 Sum_probs=73.2
Q ss_pred EEEEEEECCEEEEEcCCcccccCCCCCC---CCCCcEEEEeccCCC-CCcceEEEEcccccccCccccccceEEEEEEEC
Q 011852 260 STGWIEWDGERFEFQDAPSYSEKNWGGA---FPRKWFWVQCNVFEG-ATGEVALTAGGGLRQLPVLDSFENAAMIGIHYD 335 (476)
Q Consensus 260 asG~I~~nG~~~dF~~g~GYiEKNWG~s---FP~~w~W~Qcn~Fd~-~~~~~sLt~AGg~~~IP~l~~f~~~~lIgl~~~ 335 (476)
++|+|.++|++++|+...++.=-|||+. +-..|-|.-+++..+ .. .+.|-++.|... +- +..=-+|.++
T Consensus 173 v~G~v~~g~~~~~~~~~~~~a~lD~~rG~~~~~t~W~Was~sg~~~dG~-~iG~NL~~g~~d-~t-----~~tEN~l~~d 245 (333)
T PF10974_consen 173 VSGSVRLGGKEYSFDPENAFAVLDWGRGYWPRETFWNWASASGRLDDGR-RIGFNLGAGFND-GT-----GATENALWVD 245 (333)
T ss_pred eEEEEEECCEEEecCCCCcEEEEEcCCCccCCcCeEEEEEEEEECCCCC-EEEEEeeccccc-CC-----CCcceEEEEC
Confidence 6999999999999997677777788875 456899999998864 32 377777765544 11 2344568899
Q ss_pred CEEEEEecCCcceEEEEee---eeeEEEEEEeCcEEEEEEEE
Q 011852 336 GILYEFVPWNGVVSWEISQ---WGYWYFAAENQTHMVELKAT 374 (476)
Q Consensus 336 Gk~yrFaty~gs~~~~v~~---~g~w~i~~~~~~~~Lei~~~ 374 (476)
|+.+.+. .+.++++. -..|+|+-.++...|+.+-.
T Consensus 246 G~~~kL~----~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~ 283 (333)
T PF10974_consen 246 GKLHKLP----PVRFEYDREDPMKPWRITSDDGRVDLTFTPI 283 (333)
T ss_pred CEEEECC----cEEEEecCcCCCCCeEEEcCCCeEEEEEEEe
Confidence 9998883 34555553 24798888766665555533
No 5
>COG5621 Predicted secreted hydrolase [General function prediction only]
Probab=86.11 E-value=48 Score=34.78 Aligned_cols=204 Identities=18% Similarity=0.288 Sum_probs=102.6
Q ss_pred ccCceecCCCCCCCccCCC-cccccCCCCCCc-eeeEEEEEecCC-CCeEEEEEEEee----cCCcccccchhhh-hccC
Q 011852 51 SVNPVYKPTPRNRELRTPH-SGYHFDGSTRRF-FEGWYFRVSIPE-RKQSFCIIYSVE----NPAFKKKLSSLEV-AQHG 122 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~tPh-sgyhg~g~~~~f-FEGWYfKv~~p~-~~~sfA~I~sI~----~p~g~~~~~af~~-~~~~ 122 (476)
.+.+..-|+-+ ..++-|. -|=| ..| -|=||+-.++++ .++-+++-.+.+ +|.. .. +..- -+|
T Consensus 34 ~~~g~s~pt~~-~~~~fp~D~gph-----pdf~~EWWyltanLeta~g~~lgvqwt~fR~Al~p~d-~~--gW~~pqv~- 103 (354)
T COG5621 34 NAAGFSIPTRP-VAVRFPRDLGPH-----PDFQTEWWYLTANLETADGQLLGVQWTFFRSALAPAD-RS--GWRTPQVY- 103 (354)
T ss_pred cccceecccCC-cCccCccccCCC-----CCceeEEEEEeeeccccCCcEeeeEhhhhhccCCccc-cc--CCCCCceE-
Confidence 44555555544 4444432 1222 335 699999999985 568888887776 2211 11 0000 011
Q ss_pred CccccceEEEEccCCeEEE-----EcCccccccccCCceEEeCceeecCCCCCCC--CCCCCchhhhcccccceecccee
Q 011852 123 PRFTGVGVQILGADDKYMC-----HYSEESSNFWGSRHELMLGNTFRADKGSQPP--TKEVPPQEFNRRVLEGFQVTPLW 195 (476)
Q Consensus 123 ~~~~g~~iQVl~~~~~y~~-----~y~~~~~~F~~~~~~l~IG~~~~s~~~~~~~--~~~l~~~~f~~~v~~g~q~~~~~ 195 (476)
|+- +-|-+.....++ |=-......+..||.+.|+||.+-....-+. .-++.-|.|. ++++ +.
T Consensus 104 --fsh--~aVt~~s~~~~~aEk~argglGqag~~~ePf~~widnWt~r~~~~~~~~~~l~a~~d~f~------l~Lt-L~ 172 (354)
T COG5621 104 --FSH--AAVTDASRRHYVAEKLARGGLGQAGASSEPFAAWIDNWTMRASTNGLDQIDLNARTDNFV------LRLT-LQ 172 (354)
T ss_pred --EEE--EEEeccccceehhHhhccccccccccCCCChheeecceeeecccCCCCCcceeeecccce------EEEE-EE
Confidence 122 223333222111 1112244566789999999999887665321 1111111111 2221 11
Q ss_pred eeeeEecCCCCcccccccccceeeecccccccCCCCCCCCCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcC
Q 011852 196 HQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQD 275 (476)
Q Consensus 196 ~qG~l~~~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~ 275 (476)
.+|=...-+. -|+ .++ .+.+-+--+-.+|+.+ ++|+|.+||+..+++
T Consensus 173 a~gP~Vlqg~-------------------~g~-sVk-~~lg~Asyyyslp~~~-----------v~Gtv~v~g~t~~V~- 219 (354)
T COG5621 173 ATGPPVLQGD-------------------RGY-SVK-SALGQASYYYSLPRYE-----------VSGTVSVDGETFEVT- 219 (354)
T ss_pred ccCCceEeCC-------------------Ccc-ccc-hhccccceeeeeeeee-----------eeeeEEecCceeEEc-
Confidence 1221111010 011 011 1233344455556554 699999999998887
Q ss_pred CcccccCCCCCC----CCCCcEEEEeccCCCCCcceEEE
Q 011852 276 APSYSEKNWGGA----FPRKWFWVQCNVFEGATGEVALT 310 (476)
Q Consensus 276 g~GYiEKNWG~s----FP~~w~W~Qcn~Fd~~~~~~sLt 310 (476)
|.+..+|-||++ ==..|=|.-.. +++... +|+.
T Consensus 220 G~AWld~Ewgs~~lA~~q~gwDwfslh-l~~ge~-Lmlf 256 (354)
T COG5621 220 GLAWLDHEWGSQPLASEQVGWDWFSLH-LASGEK-LMLF 256 (354)
T ss_pred ceeeeccccccccccccccccceEEEE-cCCCcc-eeee
Confidence 899999999984 33456666544 333332 5553
No 6
>PF08622 Svf1: Svf1-like; InterPro: IPR013931 This entry represents oxidative stress survival proteins, such as Svf1. The protein Svf1 is required for yeast survival under conditions of oxidative stress, including cold stress []. Cells deficient in Svf1 have increased levels of reactive oxygen species (ROS) under certain conditions. ; GO: 0006979 response to oxidative stress
Probab=51.53 E-value=17 Score=38.17 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.5
Q ss_pred cEEEEEEECCEEEEEcCCc
Q 011852 259 LSTGWIEWDGERFEFQDAP 277 (476)
Q Consensus 259 lasG~I~~nG~~~dF~~g~ 277 (476)
.++|+|..+++.++|++.+
T Consensus 138 ~v~GtI~~~~~~~~~~g~~ 156 (325)
T PF08622_consen 138 KVEGTITTKGKEIDFKGVP 156 (325)
T ss_pred EEEEEEEECCEEEEecCCc
Confidence 3699999999999999853
No 7
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=26.45 E-value=44 Score=27.94 Aligned_cols=26 Identities=38% Similarity=0.667 Sum_probs=20.6
Q ss_pred ccccCCCCCCceeeEEEEEecCCCCeEEEEEEEee
Q 011852 71 GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVE 105 (476)
Q Consensus 71 gyhg~g~~~~fFEGWYfKv~~p~~~~sfA~I~sI~ 105 (476)
.|...|++||||| ++..||++|-|-.
T Consensus 8 lfy~~g~rrryfe---------q~e~sfsiicgrl 33 (91)
T PF06523_consen 8 LFYFPGQRRRYFE---------QGEHSFSIICGRL 33 (91)
T ss_pred HhcCCcceeehhh---------ccCeeEEEEeece
Confidence 4678899999998 4688999887644
No 8
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=23.71 E-value=4.9e+02 Score=27.02 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=51.2
Q ss_pred eeEEEE----EEeCcEEEEEEEEec--CCCceEeCCCCCCCccccee-ecccEEEEEEEEeccccCCCCeEEEEEeecee
Q 011852 356 GYWYFA----AENQTHMVELKATTK--YPGTTLRAPTSEAGLAPACK-DTCFGELTLQLWERRYDGTKGKMILDVTSDMA 428 (476)
Q Consensus 356 g~w~i~----~~~~~~~Lei~~~~~--~~g~~L~AP~~g~~m~~~c~-ES~~g~i~v~L~~k~~~~~~g~lI~d~~s~~A 428 (476)
+.++|. ...+.+.+++++... .+.+.+..|....+.....+ .++.++..|++-.+ +..++.....|
T Consensus 121 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~e~L~vv~P~~~~~f~yt~K~~~~pv~G~v~~g~~-------~~~~~~~~~~a 193 (333)
T PF10974_consen 121 GGRRLDVDLFGKGPGLEADLELDRPPGHEPLNVVTPWGENRFYYTQKQNGLPVSGSVRLGGK-------EYSFDPENAFA 193 (333)
T ss_pred CeEEEEEEccCCCCCEEEEEEEeCCCCCCCEEEEeecCCCCEEEEEEecCcceEEEEEECCE-------EEecCCCCcEE
Confidence 556666 567788888888742 24478889986633333333 24556666666211 34466668899
Q ss_pred EEeeeCCccc--cccc
Q 011852 429 ALEVGGGPWF--NTWK 442 (476)
Q Consensus 429 glEiGG~pw~--~~w~ 442 (476)
.|..+.+.|. +.|.
T Consensus 194 ~lD~~rG~~~~~t~W~ 209 (333)
T PF10974_consen 194 VLDWGRGYWPRETFWN 209 (333)
T ss_pred EEEcCCCccCCcCeEE
Confidence 9999999874 4555
No 9
>TIGR02543 List_Bact_rpt Listeria/Bacterioides repeat. This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria.
Probab=12.34 E-value=97 Score=23.00 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=11.5
Q ss_pred ceeeEEEEEecCCCC-eEEEEEEE
Q 011852 81 FFEGWYFRVSIPERK-QSFCIIYS 103 (476)
Q Consensus 81 fFEGWYfKv~~p~~~-~sfA~I~s 103 (476)
-|+|||-. .+.. +.+-|...
T Consensus 7 ~F~GWY~d---~~~~~~~~~~~~~ 27 (44)
T TIGR02543 7 VFDGWYGD---SAFTTTVWNFTPD 27 (44)
T ss_pred EeeeeEEc---CCCCeeeEEecCC
Confidence 49999943 3334 55555443
No 10
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=12.31 E-value=2e+02 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.448 Sum_probs=18.6
Q ss_pred EEEEEEECCEEEEEcCCcccccC
Q 011852 260 STGWIEWDGERFEFQDAPSYSEK 282 (476)
Q Consensus 260 asG~I~~nG~~~dF~~g~GYiEK 282 (476)
-+|.|+.||+.|++-.+.+..-|
T Consensus 49 ~S~kiE~~Gq~ydiPss~~~~~~ 71 (82)
T PF05720_consen 49 NSGKIERNGQEYDIPSSRGSSWR 71 (82)
T ss_pred eeeeEEECCEEeeCCcccCceee
Confidence 39999999999999877665543
Done!