Query 011852
Match_columns 476
No_of_seqs 146 out of 177
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ich_A Putative ATTH; structur 97.0 0.068 2.3E-06 54.3 20.7 205 56-312 3-225 (335)
2 1nvp_C Transcription initiatio 11.7 1.2E+02 0.0042 24.3 2.4 21 261-281 55-75 (76)
3 1nh2_C Transcription initiatio 10.2 1.5E+02 0.0051 24.0 2.4 21 261-281 57-77 (79)
4 2vgp_C Inner centromere protei 9.2 64 0.0022 23.2 -0.1 29 440-468 3-31 (43)
5 2y5p_A Internalin B, INLB; pro 4.9 2.3E+02 0.0077 21.9 1.0 9 81-89 38-46 (74)
6 1mj4_A Sulfite oxidase; cytoch 4.8 3.8E+02 0.013 20.9 2.3 14 262-275 22-35 (82)
7 3e2u_E CAP-Gly domain-containi 4.7 1.7E+02 0.0059 20.9 0.1 16 67-82 7-23 (42)
8 3alz_B CDW150; viral protein-r 4.7 2.3E+02 0.0077 25.1 0.9 22 67-88 91-120 (149)
9 1h8g_A Major autolysin; cholin 4.6 5.4E+02 0.018 20.5 3.1 25 260-284 35-59 (95)
10 1x3x_A Cytochrome B5; hemoprot 4.4 3.9E+02 0.013 20.8 2.0 15 261-275 19-33 (82)
No 1
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=97.01 E-value=0.068 Score=54.28 Aligned_cols=205 Identities=14% Similarity=0.208 Sum_probs=106.7
Q ss_pred ecCCCCCCCccCCC-cccccCCCCCCceeeEEEEEecCC-CCeEEEEEEEeecCCc--c-cccchhhhhccCCccccceE
Q 011852 56 YKPTPRNRELRTPH-SGYHFDGSTRRFFEGWYFRVSIPE-RKQSFCIIYSVENPAF--K-KKLSSLEVAQHGPRFTGVGV 130 (476)
Q Consensus 56 ~~~~~~~~~~~tPh-sgyhg~g~~~~fFEGWYfKv~~p~-~~~sfA~I~sI~~p~g--~-~~~~af~~~~~~~~~~g~~i 130 (476)
|.+-.+++++.-|- -|.|-+-+ -|=||+-.++.+ .++.|+|-.+++.-.. . ...+++..-|. + ++-+
T Consensus 3 f~~v~p~~~~~fP~D~~~Hp~~~----~EWWY~tg~L~~~~G~~~G~q~TfFR~~~~~~~~~~s~w~~~q~---~-~aH~ 74 (335)
T 2ich_A 3 LAPVVPGKALEFPQDFGAHNDFR----IEWWYVTGWLETPTGKPLGFQITFFRTATEIDRDNPSHFAPDQL---I-IAHV 74 (335)
T ss_dssp CCCCCTTCCCCTTGGGSCCTTSS----EEEEEEEEEEECTTCCEEEEEEEEEEEC--------CCSCCCEE---E-EEEE
T ss_pred cccCCCCCCccCchhcCcCCCCc----eeeEEEEEEEecCCCCEEEEEEEEEeeecccCCCcccccCCCcE---E-EEEE
Confidence 34445566665552 25553332 599999999975 4778999999882211 0 11012210000 0 0002
Q ss_pred EEEcc-CCeEEE--EcCc---cccccccCCceEEeCceeecCCCCCCCCCCCCchhhhcccccceeccceeeeeeEecCC
Q 011852 131 QILGA-DDKYMC--HYSE---ESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDG 204 (476)
Q Consensus 131 QVl~~-~~~y~~--~y~~---~~~~F~~~~~~l~IG~~~~s~~~~~~~~~~l~~~~f~~~v~~g~q~~~~~~qG~l~~~~ 204 (476)
=|.+. .+.++. ++.- .......+++.+.|+++.+..+.. .+ +++ .+..+
T Consensus 75 Aitd~~~~~~~~~er~~R~~~g~Ag~~~~p~~v~iddw~~~~~~~-------~~----------~~l-------~~~~~- 129 (335)
T 2ich_A 75 ALSDPAIGKLQHDQKIARAGFDLAYARTGNTDVKLDDWIFVRETD-------GR----------YRT-------RIEAE- 129 (335)
T ss_dssp EEECTTTSSCEEEEEEEEESSCTTTEEECSSEEEETTEEEEECTT-------SC----------EEE-------EEECS-
T ss_pred EEEecCCCeEEEEEEecccCcCcccccCCCcEEEECCEEEEcCCC-------CC----------EEE-------EEeCC-
Confidence 22331 233332 2221 223456799999999998864221 00 111 11100
Q ss_pred CCcccccccccceeeeccc---ccccCCCCCCCCCcccccccccCCCcceEEEecCccEEEEEEECCEEEEEcCCccccc
Q 011852 205 RTNFAETVKSARWEYSTRP---VYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSE 281 (476)
Q Consensus 205 ~~~~~~~~~~~~W~~~i~p---~~gwG~~~~~~~~~mGpf~~LP~mEphw~V~m~h~lasG~I~~nG~~~dF~~g~GYiE 281 (476)
....++..+| ..--|+.+..+++..|..+ -...+..+-.++|+|+++|+.+.++ |.+..+
T Consensus 130 ---------~f~~dL~l~~~~P~vl~G~~G~s~k~~~~~~a-------SyYyS~P~l~v~Gtl~~~G~~~~V~-G~aW~D 192 (335)
T 2ich_A 130 ---------DFTLTFILTPSQPLMLQGENGFSRKGPGAPQA-------SYYYSEPHLQVSGIINRQGEDIPVT-GTAWLD 192 (335)
T ss_dssp ---------SEEEEEEEECCSCCEECTBTTEEECSSSTTCE-------EEEEEEEEEEEEEEEEESSCEEEEE-EEEEEE
T ss_pred ---------CEEEEEEEecCCCceEeCCCceECcCCCCCce-------eEEEecccEEEEEEEEECCEEEEEE-ecEEEc
Confidence 0123333332 1112443333333322210 1122333334799999999999997 789999
Q ss_pred CCCCCCCCC----CcEEEEeccCCCCCcceEEEEc
Q 011852 282 KNWGGAFPR----KWFWVQCNVFEGATGEVALTAG 312 (476)
Q Consensus 282 KNWG~sFP~----~w~W~Qcn~Fd~~~~~~sLt~A 312 (476)
|.||+++.. .|=|...+- ++.. ++|+..-
T Consensus 193 rEWss~~l~~~q~GWDWf~l~L-ddg~-~Lm~~~l 225 (335)
T 2ich_A 193 REWSSEYLDPNAAGWDWISANL-DDGS-ALMAFQI 225 (335)
T ss_dssp EEEESSCSCTTEEEEEEEEEEE-TTSC-EEEEEEE
T ss_pred ccCcCccCCCCCCceEEEEEEc-CCCC-cEEEEEE
Confidence 999998866 788987774 4443 3776543
No 2
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=11.67 E-value=1.2e+02 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.9
Q ss_pred EEEEEECCEEEEEcCCccccc
Q 011852 261 TGWIEWDGERFEFQDAPSYSE 281 (476)
Q Consensus 261 sG~I~~nG~~~dF~~g~GYiE 281 (476)
.|-+.+||+.|-|..+.|-.|
T Consensus 55 dGim~ingkdy~F~ka~GE~e 75 (76)
T 1nvp_C 55 DGIMNLNGRDYIFSKAIGDAE 75 (76)
T ss_dssp EEEEEETTEEEEEEEEEEEEE
T ss_pred ccEEEECCEEEEEeccceeec
Confidence 778999999999998877543
No 3
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=10.19 E-value=1.5e+02 Score=23.97 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.9
Q ss_pred EEEEEECCEEEEEcCCccccc
Q 011852 261 TGWIEWDGERFEFQDAPSYSE 281 (476)
Q Consensus 261 sG~I~~nG~~~dF~~g~GYiE 281 (476)
.|-+.+||+.|-|..+.|-.|
T Consensus 57 dGi~~ingkDy~F~ka~GE~e 77 (79)
T 1nh2_C 57 DGVVTINRNDYTFQKAQVEAE 77 (79)
T ss_dssp EEEEEETTEEEEEEEEEEEEE
T ss_pred eeEEEECCEEEEEecccEEEE
Confidence 778999999999998877544
No 4
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=9.18 E-value=64 Score=23.16 Aligned_cols=29 Identities=24% Similarity=0.653 Sum_probs=19.5
Q ss_pred cccccccchHHHhhhcccceecccccccC
Q 011852 440 TWKAKTATPELLRRTLNVPVDVDGLFGFV 468 (476)
Q Consensus 440 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (476)
.|-......+.|++-.--|.|+|.||+.+
T Consensus 3 ~WA~~~~L~~~l~~Q~~~p~D~d~iFG~I 31 (43)
T 2vgp_C 3 AWASGNLLTQAIRQQYYKPIDVDRMYGTI 31 (43)
T ss_dssp GGGSHHHHHHHHHHHHHSCCCHHHHTTTS
T ss_pred cccchHHHHHHHHHHHccCCCHHHHcCCC
Confidence 35555566666666543367999999974
No 5
>2y5p_A Internalin B, INLB; protein binding, virulence factor, pathogenicity factor, BET fold; 1.30A {Listeria monocytogenes}
Probab=4.87 E-value=2.3e+02 Score=21.87 Aligned_cols=9 Identities=44% Similarity=1.235 Sum_probs=7.1
Q ss_pred ceeeEEEEE
Q 011852 81 FFEGWYFRV 89 (476)
Q Consensus 81 fFEGWYfKv 89 (476)
-|.|||-..
T Consensus 38 tF~GWyt~~ 46 (74)
T 2y5p_A 38 VFKGWYTEK 46 (74)
T ss_dssp EEEEEESSS
T ss_pred EEeeeeecC
Confidence 599999763
No 6
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=4.75 E-value=3.8e+02 Score=20.89 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEECCEEEEEcC
Q 011852 262 GWIEWDGERFEFQD 275 (476)
Q Consensus 262 G~I~~nG~~~dF~~ 275 (476)
-||.++|+.||+++
T Consensus 22 ~wv~i~g~VYDvt~ 35 (82)
T 1mj4_A 22 IWVTLGSEVFDVTE 35 (82)
T ss_dssp EEEEETTEEEECTT
T ss_pred eEEEECCEEEEchH
Confidence 49999999999985
No 7
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=4.70 E-value=1.7e+02 Score=20.92 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=2.0
Q ss_pred CCCcccccC-CCCCCce
Q 011852 67 TPHSGYHFD-GSTRRFF 82 (476)
Q Consensus 67 tPhsgyhg~-g~~~~fF 82 (476)
.|||-+|+. ++.|+|=
T Consensus 7 pP~s~~h~~~~~eRpYC 23 (42)
T 3e2u_E 7 PPHSTHHGSRGEERPYC 23 (42)
T ss_dssp -------------CCEE
T ss_pred CCcccccCCCcccCccc
Confidence 589999985 4445553
No 8
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=4.66 E-value=2.3e+02 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=14.4
Q ss_pred CCCcccccCC--------CCCCceeeEEEE
Q 011852 67 TPHSGYHFDG--------STRRFFEGWYFR 88 (476)
Q Consensus 67 tPhsgyhg~g--------~~~~fFEGWYfK 88 (476)
.=+.||++.- .+|+==|||||-
T Consensus 91 ~LEdgY~F~leNlSL~IlesrkedEGwYfm 120 (149)
T 3alz_B 91 YLKDRYRFYLENLSLAIRESTKKDEGWYFM 120 (149)
T ss_dssp ECCSSEEEETTTTEEEETTCCGGGCEEEEE
T ss_pred ccccccEEeeccceeehhhcccccCceEEE
Confidence 3344776542 356677999996
No 9
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=4.57 E-value=5.4e+02 Score=20.48 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=15.4
Q ss_pred EEEEEEECCEEEEEcCCcccccCCC
Q 011852 260 STGWIEWDGERFEFQDAPSYSEKNW 284 (476)
Q Consensus 260 asG~I~~nG~~~dF~~g~GYiEKNW 284 (476)
++|++.+||+-|=|+...|.+-+||
T Consensus 35 ~tGW~~~~g~wYY~~~~~G~m~~~~ 59 (95)
T 1h8g_A 35 KTGWVKYKDTWYYLDAKEGAMVSNA 59 (95)
T ss_dssp CCEEEEETTEEEEECTTTCCBCCSE
T ss_pred ecCEEEECCeEEeEcCCCCcEEeCE
Confidence 3667777777776664455555553
No 10
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=4.37 E-value=3.9e+02 Score=20.79 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=13.3
Q ss_pred EEEEEECCEEEEEcC
Q 011852 261 TGWIEWDGERFEFQD 275 (476)
Q Consensus 261 sG~I~~nG~~~dF~~ 275 (476)
+-||.++|+.||+++
T Consensus 19 ~~wv~i~g~VYDvT~ 33 (82)
T 1x3x_A 19 DLWIIYDGEVHDMTS 33 (82)
T ss_dssp EEEEEETTEEEECGG
T ss_pred CEEEEECCEEEECCc
Confidence 469999999999985
Done!