Your job contains 1 sequence.
>011853
MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGS
RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV
SNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPT
PVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYA
TSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPE
RPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRG
VCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGS
SKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011853
(476 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 649 3.0e-127 2
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 1225 1.1e-124 1
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 608 2.6e-115 2
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 460 5.8e-80 2
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 445 4.1e-75 2
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 376 1.6e-61 3
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 309 6.1e-54 2
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 310 4.5e-51 2
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 255 7.0e-22 1
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 87 8.8e-06 2
MGI|MGI:99180 - symbol:Zfp36 "zinc finger protein 36" spe... 94 9.8e-06 2
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 129 1.4e-05 1
UNIPROTKB|Q9H000 - symbol:MKRN2 "Probable E3 ubiquitin-pr... 83 2.2e-05 4
UNIPROTKB|F1NI93 - symbol:MKRN2 "Uncharacterized protein"... 77 2.4e-05 4
UNIPROTKB|F1M3I4 - symbol:Mkrn2 "Protein Mkrn2" species:1... 79 3.8e-05 4
RGD|620722 - symbol:Zfp36 "zinc finger protein 36" specie... 93 4.1e-05 2
UNIPROTKB|P47973 - symbol:Zfp36 "Tristetraprolin" species... 93 4.1e-05 2
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 89 4.6e-05 3
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 79 5.9e-05 4
UNIPROTKB|Q6GLD9 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 82 7.6e-05 4
ZFIN|ZDB-GENE-020213-2 - symbol:mkrn2 "makorin, ring fing... 80 9.6e-05 3
UNIPROTKB|D0VE66 - symbol:LOC100623625 "Tristetraprolin" ... 91 0.00015 2
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 76 0.00018 4
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 82 0.00022 2
UNIPROTKB|E2RKS9 - symbol:ZFP36 "Uncharacterized protein"... 82 0.00028 2
ZFIN|ZDB-GENE-030131-9399 - symbol:zc3h3 "zinc finger CCC... 111 0.00031 2
UNIPROTKB|B0F0H3 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 73 0.00035 4
UNIPROTKB|P26651 - symbol:ZFP36 "Tristetraprolin" species... 95 0.00089 2
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 649 (233.5 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 128/232 (55%), Positives = 154/232 (66%)
Query: 191 LQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLV-SPSMFSLQGWSPYATSLNPIXXX 249
LQS S+PS+QQYG+V+ RP L GSY+Q PYGP +V P M GW+PY SL+ +
Sbjct: 204 LQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSP 263
Query: 250 XXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQY 309
IYG+T LS SA AYTGTYQ KE FP+RP Q ECQY
Sbjct: 264 GTQPSIGSSS--IYGLTPLSPSATAYTGTYQSVPSSNSTS----KE--FPQRPDQPECQY 315
Query: 310 YMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACK 369
+M+TGDCKFGSSCR+HHP + + PK + LS GLPLRPG A CTH+ Q G+CKFGPACK
Sbjct: 316 FMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACK 375
Query: 370 FDHPMGM-LSYSPSASSLADMPVAPYPVGSSI--GTLAPSSASSDLRPELIS 418
FDH M LSYSPSASSL DMPVAPYP+GSS G+ AP S+S++ E ++
Sbjct: 376 FDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEPTKEAVT 427
Score = 621 (223.7 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 116/173 (67%), Positives = 133/173 (76%)
Query: 1 MERHGRVSE-GSQSDPSPEWTAPGTETGPE------GL------GVGAESYPERPDEADC 47
MER+GR E GS+SDPS EWT+ G ET E GL G G ESYPERPDE DC
Sbjct: 1 MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDC 60
Query: 48 IHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGAS 107
I+Y+RTG C YGSRCRFNHPRDRG+V+G R G PER+G PVCQ++MRTGTCK+GAS
Sbjct: 61 IYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGAS 120
Query: 108 CKYHHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
CKYHHPRQG G SV+ VSL+Y GYPLRPGEKECSYY++T QCKFG TC+F+H
Sbjct: 121 CKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNH 173
Score = 240 (89.5 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 54/134 (40%), Positives = 74/134 (55%)
Query: 299 PERPGQQECQYYMKTGDCKFGSSCRFHHPRE-----LIVPKMDVTLSPFGLPLRPGAAPC 353
PER G CQ++M+TG CKFG+SC++HHPR+ + P V+LS G PLRPG C
Sbjct: 98 PERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAP---VSLSYLGYPLRPGEKEC 154
Query: 354 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSI-GTLA----PSSA 408
++Y++ G CKFG C+F+HP+ + P P P P +I TL PSS
Sbjct: 155 SYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQP-QPQPQLQTIYPTLQSQSIPSSQ 213
Query: 409 SSDL---RPELISG 419
L RP ++G
Sbjct: 214 QYGLVLTRPSFLTG 227
Score = 234 (87.4 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
EFP+R QP CQY+MRTG CK+G+SC+YHHP + + L+ G PLRPG +C+++
Sbjct: 303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHF 362
Query: 143 MKTRQCKFGATCKFHH 158
+ CKFG CKF H
Sbjct: 363 AQHGICKFGPACKFDH 378
Score = 205 (77.2 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 40/99 (40%), Positives = 56/99 (56%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 357
+PERP + +C YY++TG C +GS CRF+HPR+ V LP R G C H++
Sbjct: 51 YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFM 110
Query: 358 QRGVCKFGPACKFDHPM---GMLSYSPSASSLADMPVAP 393
+ G CKFG +CK+ HP G S +P + S P+ P
Sbjct: 111 RTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRP 149
Score = 190 (71.9 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 35 AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRG---SVMGAARAGGGEFPERVGQP 91
A + PER C H++RTG C +G+ C+++HPR G SV + + G +P R G+
Sbjct: 94 AGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLG-YPLRPGEK 152
Query: 92 VCQYYMRTGTCKYGASCKYHHP 113
C YY+RTG CK+G +C+++HP
Sbjct: 153 ECSYYLRTGQCKFGLTCRFNHP 174
Score = 181 (68.8 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 16 SPEWTA-PGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDR-GSV 73
SP TA GT ++ +P+RPD+ +C +++RTG C +GS CR++HP D
Sbjct: 281 SPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPK 340
Query: 74 MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLR 133
G + G P R G C ++ + G CK+G +CK+ H + S S + + P+
Sbjct: 341 TGIVLSSIG-LPLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVA 399
Query: 134 P 134
P
Sbjct: 400 P 400
Score = 135 (52.6 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIV 332
+P RPG++EC YY++TG CKFG +CRF+HP L V
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAV 179
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 248/434 (57%), Positives = 288/434 (66%)
Query: 1 MERHGRVSEG-SQSDPSPEWTAPGTETGPE------GL---GVGAESYPERPDEADCIHY 50
MER+G E S+SDPS EW+A GTETG E GL G G E++PERPDE DCI+Y
Sbjct: 1 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYY 60
Query: 51 VRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKY 110
+RTG C YGSRCRFNHPR+R V+G R GEFPER+GQPVCQ++MRTGTCK+GASCKY
Sbjct: 61 LRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKY 120
Query: 111 HHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHXXXXXXXXXX 168
HHPRQG G SV+ VSLNY G+PLRPGEKECSY+M+T QCKFG+TC++HH
Sbjct: 121 HHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPS 180
Query: 169 XXXXXXXXXXXXXXXXXXXXXXLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYG--PVLV 226
LQS +VPS+QQYGVV+ARP LL GSYVQ PYG +++
Sbjct: 181 QQQQQQLSAGPTMYPS------LQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVL 234
Query: 227 SPSMFSLQGWSPYATSLNPIXXXXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXX 286
P M GW+PY S++ + +YGIT LS SAPAY
Sbjct: 235 PPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSS--VYGITPLSPSAPAYQS-------GP 285
Query: 287 XXXXXXQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPL 346
KE FP+RP Q ECQY+M+TGDCKFG+SCRFHHP E P+ TLS GLPL
Sbjct: 286 SSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPL 344
Query: 347 RPGAAPCTHYVQRGVCKFGPACKFDHPMGM--LSYSPSASSLADMPVAPYPVGSSIGTLA 404
RPGA PCTH+ Q G+CKFGPACKFDH +G LSYSPS SSL DMPVAPYP SS+GTLA
Sbjct: 345 RPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLA 402
Query: 405 PSSASSDLRPELIS 418
PSS SSD ELIS
Sbjct: 403 PSS-SSDQCTELIS 415
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 608 (219.1 bits), Expect = 2.6e-115, Sum P(2) = 2.6e-115
Identities = 119/228 (52%), Positives = 149/228 (65%)
Query: 194 PSVPSAQ--QYG-----VVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI 246
PSV S QYG + VAR LL GSY+QG YGP+L++P + + GWSPY+ ++P
Sbjct: 181 PSVQSLMPDQYGGPSSSLRVART-LLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSP- 238
Query: 247 XXXXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQE 306
+YG+TQL+++ P+ G Y QKE FPERPG+ E
Sbjct: 239 -ALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVI---QKEQAFPERPGEPE 294
Query: 307 CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGP 366
CQYY+KTGDCKFG+SC+FHHPR+ + P+ + LSP GLPLRPG CT YVQ G CKFG
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGS 354
Query: 367 ACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLA--PSSASSDL 412
CKFDHPMG + Y+PSASSLAD PVAPYPV S +G LA PSS+S++L
Sbjct: 355 TCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSSTEL 402
Score = 549 (198.3 bits), Expect = 2.6e-115, Sum P(2) = 2.6e-115
Identities = 92/153 (60%), Positives = 117/153 (76%)
Query: 10 GSQSDPSPEWTAPGTETGPEG----LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFN 65
GSQS +P+WT +TG + LG+G++SYPERP DC +Y+RTG C YG+RCR+N
Sbjct: 10 GSQSAQAPDWTPADADTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYN 69
Query: 66 HPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSL 125
HPRDR SV RA G ++PER G+P CQ+Y++TGTCK+GASCK+HHP+ GS+S+V L
Sbjct: 70 HPRDRASVEATVRATG-QYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPL 128
Query: 126 NYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
N YGYP+R G+ ECSYY+KT QCKFG TCKFHH
Sbjct: 129 NIYGYPVREGDNECSYYLKTGQCKFGITCKFHH 161
Score = 254 (94.5 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER G+P CQYY++TG CK+G SCK+HHPR +N L+ G PLRPG + C++Y+
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 144 KTRQCKFGATCKFHH 158
+ CKFG+TCKF H
Sbjct: 346 QNGFCKFGSTCKFDH 360
Score = 237 (88.5 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 51/122 (41%), Positives = 71/122 (58%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 357
+PER G+ CQ+Y+KTG CKFG+SC+FHHP+ V L+ +G P+R G C++Y+
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYL 146
Query: 358 QRGVCKFGPACKFDHPMGMLSYSPSASSLADMPV-AP--YPVGSSIGTLAPSS---ASSD 411
+ G CKFG CKF HP P+ +++ P AP YP S+ +L P SS
Sbjct: 147 KTGQCKFGITCKFHHPQ------PAGTTVPPPPASAPQFYP---SVQSLMPDQYGGPSSS 197
Query: 412 LR 413
LR
Sbjct: 198 LR 199
Score = 215 (80.7 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 44/117 (37%), Positives = 61/117 (52%)
Query: 269 SASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
SA AP +T +PERPG +C YYM+TG C +G+ CR++HPR
Sbjct: 13 SAQAPDWTPADADTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Query: 329 ELIVPKMDVTLSPFG-LPLRPGAAPCTHYVQRGVCKFGPACKFDHPM---GMLSYSP 381
+ ++ T+ G P R G PC Y++ G CKFG +CKF HP G +S+ P
Sbjct: 73 DRA--SVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVP 127
Score = 211 (79.3 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YPER E C Y++TG C +G+ C+F+HP++ G M +P R G C YY+
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYL 146
Query: 98 RTGTCKYGASCKYHHPRQGAGS 119
+TG CK+G +CK+HHP Q AG+
Sbjct: 147 KTGQCKFGITCKFHHP-QPAGT 167
Score = 202 (76.2 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 37/107 (34%), Positives = 61/107 (57%)
Query: 7 VSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNH 66
V++ + + PS P + P G+ +++PERP E +C +Y++TG C +G+ C+F+H
Sbjct: 256 VTQLTSTTPSLPGVYPSLSS-PTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHH 314
Query: 67 PRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 113
PRDR P R G C +Y++ G CK+G++CK+ HP
Sbjct: 315 PRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
Score = 102 (41.0 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEF 84
YP R + +C +Y++TG C +G C+F+HP+ G+ + A +F
Sbjct: 133 YPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQF 179
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 460 (167.0 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 75/122 (61%), Positives = 93/122 (76%)
Query: 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
SYPERP E DC +Y+RTG C +GS CRFNHPRDR V+ AR G E+PER+GQP C+YY
Sbjct: 36 SYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYY 94
Query: 97 MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKF 156
++TGTCK+G +CK+HHPR AG VSLN GYPLR E +C+Y+++T CKFG TCKF
Sbjct: 95 LKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKF 154
Query: 157 HH 158
+H
Sbjct: 155 NH 156
Score = 362 (132.5 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 73/192 (38%), Positives = 100/192 (52%)
Query: 196 VPSAQQYGVVVARPPLLHGSYVQGP--YGPVLVSPSMFSLQGWSPYATSLNPIX-XXXXX 252
VP++ Q +R + Q P Y +++ + +QGW+PY+ L +
Sbjct: 166 VPTSGQQSYPWSRASFIASPRWQDPSSYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGN 225
Query: 253 XXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQYYMK 312
I S S +++G +E+ FPERPGQ ECQ+YMK
Sbjct: 226 DQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMK 285
Query: 313 TGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH 372
TGDCKFG+ C+FHHPR+ P D LS GLPLRPG C Y + G+CKFGP+CKFDH
Sbjct: 286 TGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH 345
Query: 373 PMGMLSYSPSAS 384
PM + +Y +AS
Sbjct: 346 PMRVFTYDNTAS 357
Score = 238 (88.8 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 82 GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSY 141
G +PER G+P C YY+RTG C++G++C+++HPR ++ + YP R G+ EC Y
Sbjct: 35 GSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGE-YPERIGQPECEY 93
Query: 142 YMKTRQCKFGATCKFHH 158
Y+KT CKFG TCKFHH
Sbjct: 94 YLKTGTCKFGVTCKFHH 110
Score = 236 (88.1 bits), Expect = 9.2e-18, P = 9.2e-18
Identities = 40/75 (53%), Positives = 49/75 (65%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER GQP CQ+YM+TG CK+G CK+HHPR + L+ G PLRPGE C +Y
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 144 KTRQCKFGATCKFHH 158
+ CKFG +CKF H
Sbjct: 331 RYGICKFGPSCKFDH 345
Score = 233 (87.1 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 39/76 (51%), Positives = 51/76 (67%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 357
+PER GQ EC+YY+KTG CKFG +C+FHHPR V+L+ G PLR C +++
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFL 141
Query: 358 QRGVCKFGPACKFDHP 373
+ G CKFG CKF+HP
Sbjct: 142 RTGHCKFGGTCKFNHP 157
Score = 217 (81.4 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 42/115 (36%), Positives = 65/115 (56%)
Query: 1 MERHGRVSEGSQSDPSPEWTAPGTETGPEGL-GVGAES-YPERPDEADCIHYVRTGFCAY 58
++++ + GSQS S PG+ G + E+ +PERP + +C Y++TG C +
Sbjct: 232 LQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKF 291
Query: 59 GSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 113
G+ C+F+HPRDR + P R G+P+C +Y R G CK+G SCK+ HP
Sbjct: 292 GTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
Score = 212 (79.7 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPR--ELIVPKMDVTLSPFG-LPLRPGAAPCT 354
+PERPG+ +C YY++TG C+FGS+CRF+HPR EL++ T G P R G C
Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI----ATARMRGEYPERIGQPECE 92
Query: 355 HYVQRGVCKFGPACKFDHP 373
+Y++ G CKFG CKF HP
Sbjct: 93 YYLKTGTCKFGVTCKFHHP 111
Score = 201 (75.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YPER + +C +Y++TG C +G C+F+HPR++ + G +P R + C Y++
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFL 141
Query: 98 RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYP 131
RTG CK+G +CK++HP+ ++ + YP
Sbjct: 142 RTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYP 175
Score = 122 (48.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 121 SNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
S+ ++ YP RPGE +CSYY++T C+FG+TC+F+H
Sbjct: 28 SDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNH 65
Score = 106 (42.4 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
+P R + +C Y+++TG CKFG +C+F+HP+
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQ 158
Score = 38 (18.4 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 378 SYSPSASSLADMPVAPY-PVGSSIGTLAPSSASSD 411
SY+ +PV + P +G+++PS +D
Sbjct: 192 SYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGND 226
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 445 (161.7 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 74/128 (57%), Positives = 95/128 (74%)
Query: 31 LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQ 90
+GV SYPER E DC +Y+RTG C +GS CRFNHP DR V+ AR G E+PER+GQ
Sbjct: 33 MGVDG-SYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKG-EYPERIGQ 90
Query: 91 PVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKF 150
P C++Y++TGTCK+G +CK+HHPR AG +VS+N YPLRP E +CSY+++ QCKF
Sbjct: 91 PECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKF 150
Query: 151 GATCKFHH 158
G TCKF+H
Sbjct: 151 GGTCKFNH 158
Score = 331 (121.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 294 KEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 353
+E+ FPERPGQ ECQ+YMKTGDCKFG+ C+FHHPR+ P D LS GLPLRPG C
Sbjct: 236 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLC 295
Query: 354 THYVQRGVCKFGPACKFDHPMGMLSYSPSASS 385
Y + G+CKFGP+CKFDHPM + +Y+ + +S
Sbjct: 296 VFYSRYGICKFGPSCKFDHPMRVFTYNNNTAS 327
Score = 234 (87.4 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 40/75 (53%), Positives = 49/75 (65%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYM 143
FPER GQP CQ+YM+TG CK+G CK+HHPR + L+ G PLRPGE C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 144 KTRQCKFGATCKFHH 158
+ CKFG +CKF H
Sbjct: 300 RYGICKFGPSCKFDH 314
Score = 228 (85.3 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 357
+PER GQ EC++Y+KTG CKFG +C+FHHPR V+++ PLRP C++++
Sbjct: 84 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFL 143
Query: 358 QRGVCKFGPACKFDHP 373
+ G CKFG CKF+HP
Sbjct: 144 RIGQCKFGGTCKFNHP 159
Score = 202 (76.2 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
+PERP + +C Y++TG C +G+ C+F+HPRDR + P R G+P+C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 98 RTGTCKYGASCKYHHP 113
R G CK+G SCK+ HP
Sbjct: 300 RYGICKFGPSCKFDHP 315
Score = 202 (76.2 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIVPKMDVTLSPFGLPLRPGAAPCTH 355
+PER G+ +C YY++TG C+FGS+CRF+HP R+L++ + P R G C
Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGE---YPERIGQPECEF 95
Query: 356 YVQRGVCKFGPACKFDHPMGMLSYSPSAS-SLADMPVAP 393
Y++ G CKFG CKF HP S S ++ P+ P
Sbjct: 96 YLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRP 134
Score = 200 (75.5 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 32/95 (33%), Positives = 58/95 (61%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
YPER + +C Y++TG C +G C+F+HPR++ + G+ +P R + C Y++
Sbjct: 84 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFL 143
Query: 98 RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPL 132
R G CK+G +CK++HP+ + +N+ ++ G P+
Sbjct: 144 RIGQCKFGGTCKFNHPQTQS---TNLMVSVRGSPV 175
Score = 124 (48.7 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 22 PGTETGPEG-LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGS-VMGAARA 79
P + G +G + V SYP RP+E DC +++R G C +G C+FNHP+ + + +M + R
Sbjct: 113 PRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRG 172
Query: 80 GG--GEFPERVGQP 91
GQP
Sbjct: 173 SPVYSALQSLTGQP 186
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 376 (137.4 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 67/134 (50%), Positives = 84/134 (62%)
Query: 25 ETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEF 84
ETG E L YP+RP E DC Y+RTG C YGS CR+NHP + + E
Sbjct: 35 ETGVEELN----PYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKE---EL 87
Query: 85 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMK 144
PER+GQP C+Y+++TG CKYG +CKYHHP+ G+ V N G P+R GEK C YY++
Sbjct: 88 PERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGA-QPVMFNVIGLPMRLGEKPCPYYLR 146
Query: 145 TRQCKFGATCKFHH 158
T C+FG CKFHH
Sbjct: 147 TGTCRFGVACKFHH 160
Score = 241 (89.9 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 51/131 (38%), Positives = 74/131 (56%)
Query: 294 KEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 353
KE PER GQ +C+Y++KTG CK+G +C++HHP++ + V + GLP+R G PC
Sbjct: 84 KEE-LPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQ-PVMFNVIGLPMRLGEKPC 141
Query: 354 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAP--YPVG----SSIGTLAPSS 407
+Y++ G C+FG ACKF HP +S +A ++ P A Y G S+ GTL
Sbjct: 142 PYYLRTGTCRFGVACKFHHPQPDNGHS-TAYGMSSFPAADLRYASGLTMMSTYGTLPRPQ 200
Query: 408 ASSDLRPELIS 418
P L+S
Sbjct: 201 VPQSYVPILVS 211
Score = 225 (84.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 38/96 (39%), Positives = 61/96 (63%)
Query: 296 HPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTH 355
+P+P+RPG+++CQ+Y++TG C +GSSCR++HP L P+ DV LP R G C +
Sbjct: 42 NPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHL--PQ-DVAYYKEELPERIGQPDCEY 98
Query: 356 YVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPV 391
+++ G CK+GP CK+ HP P ++ +P+
Sbjct: 99 FLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPM 134
Score = 220 (82.5 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 28 PEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPER 87
P+ + E PER + DC ++++TG C YG C+++HP+DR G P R
Sbjct: 77 PQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIG-LPMR 135
Query: 88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 118
+G+ C YY+RTGTC++G +CK+HHP+ G
Sbjct: 136 LGEKPCPYYLRTGTCRFGVACKFHHPQPDNG 166
Score = 217 (81.4 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 45/115 (39%), Positives = 61/115 (53%)
Query: 300 ERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQR 359
E Q EC+++M TG CK+G C++ HP I ++PF LP RPG C ++
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSY 319
Query: 360 GVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGT---LAPSSASSD 411
G CKFGP CKFDHPM L Y P + +P P S + T ++P+ SD
Sbjct: 320 GFCKFGPNCKFDHPM--LPY-PGLTMATSLPT---PFASPVTTHQRISPTPNRSD 368
Score = 178 (67.7 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
Identities = 38/96 (39%), Positives = 45/96 (46%)
Query: 65 NHPRDRGSV--MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN 122
N P GS M A A E QP C+++M TGTCKYG CKY HP
Sbjct: 237 NQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPP 296
Query: 123 VSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
+N + P RPG+ C + CKFG CKF H
Sbjct: 297 SLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDH 332
Score = 152 (58.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRT 99
E D+ +C ++ TG C YG C+++HP R S + P R GQP C +
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSY 319
Query: 100 GTCKYGASCKYHHP 113
G CK+G +CK+ HP
Sbjct: 320 GFCKFGPNCKFDHP 333
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 35/114 (30%), Positives = 53/114 (46%)
Query: 299 PERPGQQECQYYMKTGDCKFGSSCRFHHPRE----------LIVPKMDVTLSPFGLPLRP 348
P R G++ C YY++TG C+FG +C+FHHP+ P D+ + GL +
Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADLRYAS-GLTMMS 191
Query: 349 --GAAPCTHYVQRGV-CKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSS 399
G P Q V P+ F P G Y +++S+ ++ PY GSS
Sbjct: 192 TYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSS 245
Score = 107 (42.7 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 296 HPF--PERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 353
+PF P RPGQ C + G CKFG +C+F HP ++P +T++ LP P A+P
Sbjct: 300 NPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHP---MLPYPGLTMAT-SLPT-PFASPV 354
Query: 354 THYVQR 359
T + QR
Sbjct: 355 TTH-QR 359
Score = 96 (38.9 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 15 PSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPR-DRG 71
P+ ++ P G + + P R E C +Y+RTG C +G C+F+HP+ D G
Sbjct: 109 PTCKYHHPKDRNGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNG 166
Score = 66 (28.3 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 221 YGPVLVSPSMFSL--QGWSPYATSLN 244
Y P+LVSPS L QGW+PY + N
Sbjct: 205 YVPILVSPSQGFLPPQGWAPYMAASN 230
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 309 (113.8 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 56/123 (45%), Positives = 74/123 (60%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPE--RVGQPVCQY 95
YP RP DC Y+RTG C +GS C+FNHP R + + + ++G C+Y
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKY 166
Query: 96 YMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCK 155
Y RTG CKYG +C+++H +G S LN+ G PLRPGE EC YYM+ CK+GA CK
Sbjct: 167 YFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECK 226
Query: 156 FHH 158
F+H
Sbjct: 227 FNH 229
Score = 266 (98.7 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 47/94 (50%), Positives = 64/94 (68%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMD-VTLSPFGLPLRPGAAPCTHY 356
FPERP Q EC YYMKTGDCKF +C++HHP+ + PK+ L+ GLPLRP CT+Y
Sbjct: 343 FPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRL-PKLPPYALNDKGLPLRPDQNICTYY 401
Query: 357 VQRGVCKFGPACKFDHPMGMLSYSPSASSLADMP 390
+ G+CKFGPAC+FDH + + S+ ++ + P
Sbjct: 402 SRYGICKFGPACRFDHSVQPPYSTESSQAIVEPP 435
Score = 226 (84.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
EFPER QP C YYM+TG CK+ +CKYHHP+ + +LN G PLRP + C+YY
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYY 401
Query: 143 MKTRQCKFGATCKFHH 158
+ CKFG C+F H
Sbjct: 402 SRYGICKFGPACRFDH 417
Score = 211 (79.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 303 GQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSP----FGLPLRPGAAPCTHYVQ 358
G +C+YY +TG CK+G +CRF+H +PK + +P GLPLRPG C +Y++
Sbjct: 160 GLIDCKYYFRTGGCKYGETCRFNHT----IPKSGLASAPELNFLGLPLRPGEVECPYYMR 215
Query: 359 RGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSS 407
G CK+G CKF+HP P+ D P G SIGT +P +
Sbjct: 216 NGSCKYGAECKFNHP------DPTTIGGTDSPSFRGNNGVSIGTFSPKA 258
Score = 195 (73.7 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 37/105 (35%), Positives = 61/105 (58%)
Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP--RELIVPKMDVTLSPFGLPLRPGA 350
+ E+ +P RPG ++C +YM+TG CKFGSSC+F+HP R+ + + + + G
Sbjct: 102 ESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGL 161
Query: 351 APCTHYVQRGVCKFGPACKFDH--PMGMLSYSPSASSLADMPVAP 393
C +Y + G CK+G C+F+H P L+ +P + L +P+ P
Sbjct: 162 IDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLG-LPLRP 205
Score = 191 (72.3 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 33/68 (48%), Positives = 40/68 (58%)
Query: 46 DCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYG 105
DC +Y RTG C YG CRFNH + + A P R G+ C YYMR G+CKYG
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222
Query: 106 ASCKYHHP 113
A CK++HP
Sbjct: 223 AECKFNHP 230
Score = 186 (70.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 35 AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQ 94
AE +PERPD+ +C +Y++TG C + C+++HP++R + P R Q +C
Sbjct: 340 AEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICT 399
Query: 95 YYMRTGTCKYGASCKYHHPRQ 115
YY R G CK+G +C++ H Q
Sbjct: 400 YYSRYGICKFGPACRFDHSVQ 420
Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 299 PERPGQQECQYYMKTGDCKFGSSCRFHHP 327
P RPG+ EC YYM+ G CK+G+ C+F+HP
Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230
Score = 107 (42.7 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 39 PERPDEADCIHYVRTGFCAYGSRCRFNHP 67
P RP E +C +Y+R G C YG+ C+FNHP
Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 310 (114.2 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
Identities = 58/126 (46%), Positives = 79/126 (62%)
Query: 38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPR--DRGSVMGAARAG---GGEFPERVGQPV 92
YP+R E DC HY++T C +G CRF+HP G + A E+PER G+P
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 93 CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGA 152
C YY++T CKYG+ CK++HPR+ A +VS + + P RP E C++YMKT +CKFG
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEA-AVSVETQD--SLPERPSEPMCTFYMKTGKCKFGL 287
Query: 153 TCKFHH 158
+CKFHH
Sbjct: 288 SCKFHH 293
Score = 255 (94.8 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 45/98 (45%), Positives = 61/98 (62%)
Query: 17 PEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGA 76
PE P + P V E YPERP E DC +Y++T C YGS+C+FNHPR+ +V
Sbjct: 204 PEGGIPDWKEAPV---VPNEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVE 260
Query: 77 ARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
+ PER +P+C +YM+TG CK+G SCK+HHP+
Sbjct: 261 TQ---DSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPK 295
Score = 247 (92.0 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
Identities = 43/83 (51%), Positives = 55/83 (66%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELI------VPKM-DVTLSPFGLPLRPGA 350
+P+RPGQ EC YYMKTG+CKFG C+FHHP + + P+ +V LS G P R GA
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 351 APCTHYVQRGVCKFGPACKFDHP 373
C +Y++ G CK+G CKFDHP
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHP 499
Score = 235 (87.8 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 24 TETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGA------- 76
T T P LGV + +YP+RP +++C +Y++TG C +G RC+F+HP DR S M
Sbjct: 404 TLTQPT-LGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPN 462
Query: 77 ARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116
+ +P R G C YYM+TGTCKYGA+CK+ HP G
Sbjct: 463 VKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPG 502
Score = 232 (86.7 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 41/82 (50%), Positives = 51/82 (62%)
Query: 84 FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVS-------NVSLNYYGYPLRPGE 136
+P+R GQ C YYM+TG CK+G CK+HHP +++ NV L+ GYP R G
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 137 KECSYYMKTRQCKFGATCKFHH 158
C YYMKT CK+GATCKF H
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDH 498
Score = 222 (83.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYV 357
+PERPG+ +C YY+KT CK+GS C+F+HPRE ++ S LP RP CT Y+
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDS---LPERPSEPMCTFYM 278
Query: 358 QRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSD 411
+ G CKFG +CKF HP + +P + +GSS+G + A+++
Sbjct: 279 KTGKCKFGLSCKFHHPKDI-----------QLPSSSQDIGSSVGLTSEPDATNN 321
Score = 197 (74.4 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 53/151 (35%), Positives = 71/151 (47%)
Query: 8 SEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHP 67
S G S+P P P L ++ P R E DC Y++TG C YG+ CR+NHP
Sbjct: 309 SVGLTSEPDAT-NNPHVTFTP-ALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHP 366
Query: 68 RDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNY 127
+R + + +A G + V + T A+ Y Q V + +
Sbjct: 367 -ERTAFI--PQAAGVNY-SLVSSNTANLNLGLVT---PATSFYQTLTQPTLGVISAT--- 416
Query: 128 YGYPLRPGEKECSYYMKTRQCKFGATCKFHH 158
YP RPG+ EC YYMKT +CKFG CKFHH
Sbjct: 417 --YPQRPGQSECDYYMKTGECKFGERCKFHH 445
Score = 187 (70.9 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPK---MDVTLSPF----GLPLRPGA 350
+P+R G+++C +YM+T CKFG SCRF HP + VP+ D +P P RPG
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHP--IWVPEGGIPDWKEAPVVPNEEYPERPGE 228
Query: 351 APCTHYVQRGVCKFGPACKFDHPMGMLSYS-PSASSLADMPVAP 393
C +Y++ CK+G CKF+HP + S + SL + P P
Sbjct: 229 PDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEP 272
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTL-SPFGLPLRPGAA 351
+ + PERP + C +YMKTG CKFG SC+FHHP+++ +P + S GL P A
Sbjct: 260 ETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDAT 319
Query: 352 PCTH 355
H
Sbjct: 320 NNPH 323
Score = 116 (45.9 bits), Expect = 5.2e-47, Sum P(3) = 5.2e-47
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 299 PERPGQQECQYYMKTGDCKFGSSCRFHHP-RELIVPK 334
P R G+ +C +Y+KTG CK+G++CR++HP R +P+
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQ 374
Score = 110 (43.8 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 36 ESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRD 69
+S PERP E C Y++TG C +G C+F+HP+D
Sbjct: 263 DSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKD 296
Score = 108 (43.1 bits), Expect = 5.2e-47, Sum P(3) = 5.2e-47
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 330 LIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLS 378
L P + V + + P RPG + C +Y++ G CKFG CKF HP LS
Sbjct: 405 LTQPTLGVISATY--PQRPGQSECDYYMKTGECKFGERCKFHHPADRLS 451
Score = 108 (43.1 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 343 GLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGT 402
GLP+R G C Y++ G CK+G C+++HP ++ P A+ + V+ ++G
Sbjct: 336 GLPVRSGEVDCPFYLKTGSCKYGATCRYNHPE-RTAFIPQAAGVNYSLVSSNTANLNLGL 394
Query: 403 LAPSSA 408
+ P+++
Sbjct: 395 VTPATS 400
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 40/78 (51%), Positives = 54/78 (69%)
Query: 295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCT 354
E FPERPG+ EC YY++TG+C +C++HHP+ + + TL+ GLPLRPG A C
Sbjct: 3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICP 62
Query: 355 HYVQRGVCKFGPACKFDH 372
HY + G+C+ GP CKFDH
Sbjct: 63 HYSRFGICRSGPTCKFDH 80
Score = 215 (80.7 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 83 EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYY 142
+FPER G+P C YY+RTG C +CKYHHP+ S +LN G PLRPG+ C +Y
Sbjct: 5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHY 64
Query: 143 MKTRQCKFGATCKFHH 158
+ C+ G TCKF H
Sbjct: 65 SRFGICRSGPTCKFDH 80
Score = 167 (63.8 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 36 ESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQY 95
E +PERP E +C +Y+RTG C C+++HP++ P R GQ +C +
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 96 YMRTGTCKYGASCKYHH 112
Y R G C+ G +CK+ H
Sbjct: 64 YSRFGICRSGPTCKFDH 80
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 87 (35.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 26/76 (34%), Positives = 33/76 (43%)
Query: 306 ECQYYMKTGDCKFGSSCRFHHPRELI-VPKMDVTLSPFGLPLRPGAAP-------CTHYV 357
ECQ + ++G C G C + H RE +P + F PL P A C +YV
Sbjct: 119 ECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGF-CPLGPLCAKRHVRRRLCPYYV 177
Query: 358 QRGVCKFGPACKFDHP 373
G C GP C HP
Sbjct: 178 A-GFCPEGPNCANAHP 192
Score = 84 (34.6 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 91 PVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKF 150
PVC+ Y G C G +C HP + S + + G C +++K CK
Sbjct: 45 PVCKAYSE-GHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGL-CKK 102
Query: 151 GATCKFHH 158
G C++ H
Sbjct: 103 GMKCEYLH 110
>MGI|MGI:99180 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IDA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=ISO;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IGI] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0006950 "response to stress" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0017091 "AU-rich
element binding" evidence=ISO;IDA] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0019957 "C-C chemokine binding"
evidence=ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=IDA] [GO:0043488 "regulation of mRNA stability"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IMP] [GO:0050779 "RNA destabilization"
evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071889 "14-3-3 protein binding" evidence=ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:99180 GO:GO:0005829 GO:GO:0005634 GO:GO:0006950
GO:GO:0046872 GO:GO:0003677 GO:GO:0050728 GO:GO:0008270
GO:GO:0007243 GO:GO:0000122 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0035925 GO:GO:0050779
HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538 KO:K15308
OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:M57422 EMBL:M58691 EMBL:X14678
EMBL:M58565 EMBL:L42317 EMBL:BC021391 IPI:IPI00132695 PIR:A36600
PIR:S04743 RefSeq:NP_035886.1 UniGene:Mm.389856 PDB:1M9O
PDBsum:1M9O ProteinModelPortal:P22893 SMR:P22893 IntAct:P22893
MINT:MINT-225240 STRING:P22893 PhosphoSite:P22893 PRIDE:P22893
Ensembl:ENSMUST00000051241 GeneID:22695 KEGG:mmu:22695
InParanoid:P22893 EvolutionaryTrace:P22893 NextBio:303151
Bgee:P22893 CleanEx:MM_ZFP36 Genevestigator:P22893
GermOnline:ENSMUSG00000044786 Uniprot:P22893
Length = 319
Score = 94 (38.1 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 22 PGTETGPEGLGVGAESYPERPDEAD-CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG 80
PG E P A + + C Y +G C YG++C+F H G +G R
Sbjct: 75 PGPELSPSPTSPTATPTTSSRYKTELCRTYSESGRCRYGAKCQFAH----G--LGELRQA 128
Query: 81 GGEFPERVGQPVCQYYMRTGTCKYGASCKY-HHPRQ-----GAGSVSNVSLNYYGYP 131
P+ + ++Y++ G C YG+ C + H+P + G V S+++ G P
Sbjct: 129 N-RHPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLP 183
Score = 91 (37.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C+ Y +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 100 LCRTYSESGRCRYGAKCQFAH---GLGELRQANR----HPKYKTELCHKFYLQGR-CPYG 151
Query: 152 ATCKFHH 158
+ C F H
Sbjct: 152 SRCHFIH 158
Score = 79 (32.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 31/89 (34%), Positives = 37/89 (41%)
Query: 320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH------- 372
SSC F P P D+ LSP PG P T C P+C+
Sbjct: 201 SSCSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PVTRRDPNQACC--PSCRRSTTPSTIWG 256
Query: 373 PMGMLSYSPSASSLADMPVAPYPVGSSIG 401
P+G L+ SPSA SL P GSS+G
Sbjct: 257 PLGGLARSPSAHSLGSDPDDYASSGSSLG 285
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAP 352
++ P+P RPG+++CQ+Y+K G C++ SSCRF+HP T P LP+R
Sbjct: 47 RQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHP----------TQRPQELPVRI---- 92
Query: 353 CTHYVQRGVCK 363
C H + R V +
Sbjct: 93 CKHIMDRNVAE 103
>UNIPROTKB|Q9H000 [details] [associations]
symbol:MKRN2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005622 "intracellular"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 EMBL:CH471055 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 HOVERGEN:HBG066965 CTD:23609
OrthoDB:EOG4229K2 InterPro:IPR026293 PANTHER:PTHR11224:SF17
EMBL:AF302084 EMBL:AF277170 EMBL:AF277164 EMBL:AF277165
EMBL:AF277166 EMBL:AF277167 EMBL:AF277168 EMBL:AF277169
EMBL:AF161555 EMBL:AK091318 EMBL:AC018500 EMBL:BC001799
EMBL:BC015715 EMBL:AL834512 IPI:IPI00396406 RefSeq:NP_054879.3
UniGene:Hs.591666 ProteinModelPortal:Q9H000 SMR:Q9H000
IntAct:Q9H000 STRING:Q9H000 PhosphoSite:Q9H000 DMDM:45645205
PRIDE:Q9H000 DNASU:23609 Ensembl:ENST00000170447 GeneID:23609
KEGG:hsa:23609 UCSC:uc003bxd.3 GeneCards:GC03P012598 HGNC:HGNC:7113
HPA:HPA037559 HPA:HPA037560 MIM:608426 neXtProt:NX_Q9H000
PharmGKB:PA30832 InParanoid:Q9H000 OMA:KGYCAYG ChiTaRS:MKRN2
GenomeRNAi:23609 NextBio:46312 ArrayExpress:Q9H000 Bgee:Q9H000
CleanEx:HS_MKRN2 Genevestigator:Q9H000 GermOnline:ENSG00000075975
Uniprot:Q9H000
Length = 416
Score = 83 (34.3 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGA 76
Y + G+CAYG+RCR++H R + GA
Sbjct: 39 YYQKGYCAYGTRCRYDHTRPSAAAGGA 65
Score = 79 (32.9 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYP 131
+C+YY + G C YG C+Y H R A + V + P
Sbjct: 36 ICKYYQK-GYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVP 74
Score = 66 (28.3 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F + G++ C+Y+ + G C FGS C + H
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 64 (27.6 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 304 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 342
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 168 QQLCPY-AAAGECRFGDACVYLHGEVCEICRLQV-LHPF 204
Score = 55 (24.4 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 378
G C ++ Q +G C FG C + H P G L+
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
Score = 47 (21.6 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 50 YVRTGFCAYGSRCRFNH 66
Y G C GS+C F+H
Sbjct: 10 YFMHGVCREGSQCLFSH 26
Score = 44 (20.5 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 136 EKECSYYMKTRQCKFGATCKFHH 158
E++ Y +C+FG C + H
Sbjct: 167 EQQLCPYAAAGECRFGDACVYLH 189
>UNIPROTKB|F1NI93 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AADN02013930
IPI:IPI00584461 Ensembl:ENSGALT00000007996 Uniprot:F1NI93
Length = 417
Score = 77 (32.2 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPR 114
VC+YY + G C YGA C+Y H R
Sbjct: 36 VCKYYQK-GQCAYGARCRYDHIR 57
Score = 61 (26.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F + G++ C+Y+ + G C FG C + H
Sbjct: 317 FKQGVGKKPCKYFEQGKGTCPFGGKCLYFH 346
Score = 58 (25.5 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH 372
G PC ++ Q +G C FG C + H
Sbjct: 322 GKKPCKYFEQGKGTCPFGGKCLYFH 346
Score = 57 (25.1 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 44 EADCIHYVRTGFCAYGSRCRFNH 66
+ C +YV+ G C GS+C F+H
Sbjct: 5 QVTCRYYVQ-GVCREGSKCLFSH 26
Score = 53 (23.7 bits), Expect = 2.4e-05, Sum P(4) = 2.4e-05
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 303 GQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 342
G+Q C Y G C FG C + H + + V L PF
Sbjct: 166 GEQLCPY-AAAGACHFGDRCLYLHGDVCEICGLQV-LHPF 203
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 135 GEKECSYYMKTRQCKFGATCKFHH 158
GE+ C Y C FG C + H
Sbjct: 166 GEQLCPY-AAAGACHFGDRCLYLH 188
>UNIPROTKB|F1M3I4 [details] [associations]
symbol:Mkrn2 "Protein Mkrn2" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 InterPro:IPR026293
PANTHER:PTHR11224:SF17 IPI:IPI00566412 Ensembl:ENSRNOT00000044916
ArrayExpress:F1M3I4 Uniprot:F1M3I4
Length = 417
Score = 79 (32.9 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGA 76
Y + G+CAYG+RCR++H + + GA
Sbjct: 39 YYQKGYCAYGARCRYDHTKPPAAAGGA 65
Score = 76 (31.8 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 92 VCQYYMRTGTCKYGASCKYHH--PRQGAG 118
+C+YY + G C YGA C+Y H P AG
Sbjct: 36 ICKYYQK-GYCAYGARCRYDHTKPPAAAG 63
Score = 66 (28.3 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F + G++ C+Y+ + G C FGS C + H
Sbjct: 319 FKQGMGKKACKYFEQGKGTCPFGSKCLYRH 348
Score = 62 (26.9 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 304 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 342
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 169 QQLCPY-AAAGECRFGDACVYLHGDMCEICRLQV-LHPF 205
Score = 55 (24.4 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 378
G C ++ Q +G C FG C + H P G L+
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 356
Score = 50 (22.7 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 48 IHYVRTGFCAYGSRCRFNH 66
+ Y G C GS+C F+H
Sbjct: 8 VRYFMHGVCREGSQCLFSH 26
Score = 44 (20.5 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 136 EKECSYYMKTRQCKFGATCKFHH 158
E++ Y +C+FG C + H
Sbjct: 168 EQQLCPYAAAGECRFGDACVYLH 190
>RGD|620722 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS;IDA] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO;ISS] [GO:0006950 "response to stress"
evidence=IEA;ISO;ISS] [GO:0007243 "intracellular protein kinase
cascade" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA;ISO;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISO;ISS] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0019957 "C-C chemokine binding"
evidence=IEA;ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA;ISO;ISS] [GO:0035925 "mRNA 3'-UTR AU-rich
region binding" evidence=IEA;ISO] [GO:0043488 "regulation of mRNA
stability" evidence=ISO] [GO:0045638 "negative regulation of
myeloid cell differentiation" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA;ISO] [GO:0050779 "RNA destabilization"
evidence=IEA;ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO;ISS] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA;ISO;ISS] [GO:0071889 "14-3-3 protein
binding" evidence=IEA;ISO;ISS] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 RGD:620722 GO:GO:0005829
GO:GO:0005634 GO:GO:0045893 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0006402
GO:GO:0071889 GO:GO:0010494 GO:GO:0060213 eggNOG:COG5063
GO:GO:0000289 GO:GO:0045638 GO:GO:0070935 GO:GO:0032680
GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:X63369 EMBL:AB025017
EMBL:BC060308 IPI:IPI00192126 PIR:JC1255 RefSeq:NP_579824.2
UniGene:Rn.82737 ProteinModelPortal:P47973 SMR:P47973 STRING:P47973
PhosphoSite:P47973 PRIDE:P47973 GeneID:79426 KEGG:rno:79426
UCSC:RGD:620722 InParanoid:P47973 NextBio:614778
Genevestigator:P47973 GermOnline:ENSRNOG00000019673 Uniprot:P47973
Length = 320
Score = 93 (37.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 22 PGTETGPEGLGVGAESYPERPDEAD-CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG 80
PG E P A + + C Y +G C YG++C+F H G + A R
Sbjct: 76 PGPELSPSPTSPTATPTTSSRYKTELCRTYSESGRCRYGAKCQFAH--GPGELRQANR-- 131
Query: 81 GGEFPERVGQPVCQYYMRTGTCKYGASCKY-HHPRQ-----GAGSVSNVSLNYYGYP 131
P+ + ++Y++ G C YG+ C + H+P + G V S+++ G P
Sbjct: 132 ---HPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLP 184
Score = 91 (37.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C+ Y +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 101 LCRTYSESGRCRYGAKCQFAH---GPGELRQANR----HPKYKTELCHKFYLQGR-CPYG 152
Query: 152 ATCKFHH 158
+ C F H
Sbjct: 153 SRCHFIH 159
Score = 74 (31.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 30/89 (33%), Positives = 37/89 (41%)
Query: 320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH------- 372
SSC F P P D+ LSP PG P + C P+C+
Sbjct: 202 SSCSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PVSRRDPTPACC--PSCRRSTTPSTIWG 257
Query: 373 PMGMLSYSPSASSLADMPVAPYPVGSSIG 401
P+G L+ SPSA SL P GSS+G
Sbjct: 258 PLGGLARSPSAHSLGSDPDDYASSGSSLG 286
>UNIPROTKB|P47973 [details] [associations]
symbol:Zfp36 "Tristetraprolin" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0019957 "C-C chemokine binding" evidence=IEA]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 RGD:620722 GO:GO:0005829 GO:GO:0005634 GO:GO:0045893
GO:GO:0006950 GO:GO:0046872 GO:GO:0003677 GO:GO:0050728
GO:GO:0008270 GO:GO:0003729 GO:GO:0007243 GO:GO:0017091
GO:GO:0000122 GO:GO:0006402 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479
HOVERGEN:HBG008483 CTD:7538 KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4
EMBL:X63369 EMBL:AB025017 EMBL:BC060308 IPI:IPI00192126 PIR:JC1255
RefSeq:NP_579824.2 UniGene:Rn.82737 ProteinModelPortal:P47973
SMR:P47973 STRING:P47973 PhosphoSite:P47973 PRIDE:P47973
GeneID:79426 KEGG:rno:79426 UCSC:RGD:620722 InParanoid:P47973
NextBio:614778 Genevestigator:P47973 GermOnline:ENSRNOG00000019673
Uniprot:P47973
Length = 320
Score = 93 (37.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 22 PGTETGPEGLGVGAESYPERPDEAD-CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG 80
PG E P A + + C Y +G C YG++C+F H G + A R
Sbjct: 76 PGPELSPSPTSPTATPTTSSRYKTELCRTYSESGRCRYGAKCQFAH--GPGELRQANR-- 131
Query: 81 GGEFPERVGQPVCQYYMRTGTCKYGASCKY-HHPRQ-----GAGSVSNVSLNYYGYP 131
P+ + ++Y++ G C YG+ C + H+P + G V S+++ G P
Sbjct: 132 ---HPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLP 184
Score = 91 (37.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C+ Y +G C+YGA C++ H G G + + +P E +Y++ R C +G
Sbjct: 101 LCRTYSESGRCRYGAKCQFAH---GPGELRQANR----HPKYKTELCHKFYLQGR-CPYG 152
Query: 152 ATCKFHH 158
+ C F H
Sbjct: 153 SRCHFIH 159
Score = 74 (31.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 30/89 (33%), Positives = 37/89 (41%)
Query: 320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH------- 372
SSC F P P D+ LSP PG P + C P+C+
Sbjct: 202 SSCSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PVSRRDPTPACC--PSCRRSTTPSTIWG 257
Query: 373 PMGMLSYSPSASSLADMPVAPYPVGSSIG 401
P+G L+ SPSA SL P GSS+G
Sbjct: 258 PLGGLARSPSAHSLGSDPDDYASSGSSLG 286
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 89 (36.4 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQP 91
Y + G+CAYG+RCR++H R + GA G P V P
Sbjct: 39 YYQKGYCAYGTRCRYDHTRPSAAAGGAV----GTMPHGVSSP 76
Score = 79 (32.9 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPG 135
+C+YY + G C YG C+Y H R A + V +G PG
Sbjct: 36 ICKYYQK-GYCAYGTRCRYDHTRPSAAAGGAVGTMPHGVS-SPG 77
Score = 66 (28.3 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F + G++ C+Y+ + G C FGS C + H
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 62 (26.9 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 304 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 342
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 168 QQLCPY-AAAGECRFGDACVYLHGEVCEICRLRV-LHPF 204
Score = 57 (25.1 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 135 GEKECSYYMKTR-QCKFGATCKFHH 158
G+K C Y+ + + C FG+ C + H
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 55 (24.4 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 378
G C ++ Q +G C FG C + H P G L+
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
Score = 52 (23.4 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 90 QPVCQYYMRTGTCKYGASCKYHH 112
Q +C Y G C++G +C Y H
Sbjct: 168 QQLCPY-AAAGECRFGDACVYLH 189
Score = 45 (20.9 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 44 EADCIHYVRTGFCAYGSRCRFNH 66
+ C +++ G C G++C F+H
Sbjct: 5 QVTCRYFMH-GVCREGNQCLFSH 26
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 79 (32.9 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 50 YVRTGFCAYGSRCRFNHPRDRGSVMGA 76
Y + G+CAYG+RCR++H + + GA
Sbjct: 39 YYQKGYCAYGARCRYDHTKPPAAAGGA 65
Score = 76 (31.8 bits), Expect = 5.9e-05, Sum P(4) = 5.9e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 92 VCQYYMRTGTCKYGASCKYHH--PRQGAG 118
+C+YY + G C YGA C+Y H P AG
Sbjct: 36 ICKYYQK-GYCAYGARCRYDHTKPPAAAG 63
Score = 66 (28.3 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F + G++ C+Y+ + G C FGS C + H
Sbjct: 319 FKQGMGKKACKYFEQGKGTCPFGSKCLYRH 348
Score = 62 (26.9 bits), Expect = 5.9e-05, Sum P(4) = 5.9e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 304 QQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 342
QQ C Y G+C+FG +C + H + ++ V L PF
Sbjct: 169 QQLCPY-AAAGECRFGDACVYLHGDMCEICRLQV-LHPF 205
Score = 55 (24.4 bits), Expect = 5.9e-05, Sum P(4) = 5.9e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 378
G C ++ Q +G C FG C + H P G L+
Sbjct: 324 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 356
Score = 48 (22.0 bits), Expect = 5.9e-05, Sum P(4) = 5.9e-05
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 44 EADCIHYVRTGFCAYGSRCRFNH 66
+ C +++ G C GS+C F+H
Sbjct: 5 QVTCRYFMH-GVCREGSQCLFSH 26
Score = 44 (20.5 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 136 EKECSYYMKTRQCKFGATCKFHH 158
E++ Y +C+FG C + H
Sbjct: 168 EQQLCPYAAAGECRFGDACVYLH 190
>UNIPROTKB|Q6GLD9 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8364 "Xenopus (Silurana) tropicalis" [GO:0006351
"transcription, DNA-dependent" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0009798 "axis specification"
evidence=ISS] [GO:0014065 "phosphatidylinositol 3-kinase cascade"
evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0050768
"negative regulation of neurogenesis" evidence=ISS]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0016567
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
eggNOG:COG5084 GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:BC074559 RefSeq:NP_001005447.1
UniGene:Str.24743 ProteinModelPortal:Q6GLD9 GeneID:448038
KEGG:xtr:448038 Xenbase:XB-GENE-5879487 InParanoid:Q6GLD9
Uniprot:Q6GLD9
Length = 418
Score = 82 (33.9 bits), Expect = 7.6e-05, Sum P(4) = 7.6e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSV 120
VC++Y R G C YGA C+Y H + GSV
Sbjct: 36 VCRFYQR-GQCAYGARCRYDHVKPCNGSV 63
Score = 59 (25.8 bits), Expect = 7.6e-05, Sum P(4) = 7.6e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHH 326
+P+ P QQ C + + G C +G SC + H
Sbjct: 162 YPDAP-QQLCPF-AQAGGCHYGESCPYIH 188
Score = 51 (23.0 bits), Expect = 7.6e-05, Sum P(4) = 7.6e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH 372
G C ++ Q RG C FG C + H
Sbjct: 322 GKKACKYFDQGRGTCPFGGKCLYLH 346
Score = 47 (21.6 bits), Expect = 7.6e-05, Sum P(4) = 7.6e-05
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 47 CIHYVRTGFCAYGSRCRFNH 66
C +++ G C G RC F+H
Sbjct: 8 CRYFLH-GVCREGGRCLFSH 26
>ZFIN|ZDB-GENE-020213-2 [details] [associations]
symbol:mkrn2 "makorin, ring finger protein, 2"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISS] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097
Prosite:PS00518 ZFIN:ZDB-GENE-020213-2 GO:GO:0007399 GO:GO:0030154
GO:GO:0006355 GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 EMBL:AF277172 EMBL:BC065352 IPI:IPI00493411
RefSeq:NP_694511.1 UniGene:Dr.77762 STRING:Q9DFG8
Ensembl:ENSDART00000019997 Ensembl:ENSDART00000130504 GeneID:170783
KEGG:dre:170783 CTD:23609 OrthoDB:EOG4229K2 NextBio:20797101
ArrayExpress:Q9DFG8 Bgee:Q9DFG8 InterPro:IPR026293
PANTHER:PTHR11224:SF17 Uniprot:Q9DFG8
Length = 414
Score = 80 (33.2 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 92 VCQYYMRTGTCKYGASCKYHH---PRQGAGSVSNVS 124
+C+YY R G C YG C+Y H P +G+G+ ++ S
Sbjct: 36 ICKYYQR-GACAYGDRCRYDHIKPPGRGSGAPADHS 70
Score = 78 (32.5 bits), Expect = 9.6e-05, Sum P(3) = 9.6e-05
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 47 CIHYVRTGFCAYGSRCRFNH--PRDRGS 72
C +Y R G CAYG RCR++H P RGS
Sbjct: 37 CKYYQR-GACAYGDRCRYDHIKPPGRGS 63
Score = 77 (32.2 bits), Expect = 9.6e-05, Sum P(3) = 9.6e-05
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 76 AARAGGGEFPE--RVGQPVCQYYMRTGTCKYGASCKYHH 112
AA A G FPE + +C + + G C+YG SC Y H
Sbjct: 151 AAAATAGTFPELQQTSPQICPF-LAAGQCQYGESCPYLH 188
Score = 55 (24.4 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 298 FPE--RPGQQECQYYMKTGDCKFGSSCRFHH 326
FPE + Q C + + G C++G SC + H
Sbjct: 159 FPELQQTSPQICPF-LAAGQCQYGESCPYLH 188
Score = 52 (23.4 bits), Expect = 0.00019, Sum P(4) = 0.00019
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 44 EADCIHYVRTGFCAYGSRCRFNH 66
+ C +++ G C GSRC F+H
Sbjct: 5 QVTCRYFLH-GVCREGSRCLFSH 26
Score = 50 (22.7 bits), Expect = 9.6e-05, Sum P(3) = 9.6e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F ++ C+Y+ + G C FG C + H
Sbjct: 317 FKSGVSKKACKYFDQGRGTCPFGGKCFYMH 346
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 136 EKECSYYMKTR-QCKFGATCKFHH 158
+K C Y+ + R C FG C + H
Sbjct: 323 KKACKYFDQGRGTCPFGGKCFYMH 346
Score = 48 (22.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 353 CTHYVQ-RGVCKFGPACKFDH 372
C ++ Q RG C FG C + H
Sbjct: 326 CKYFDQGRGTCPFGGKCFYMH 346
>UNIPROTKB|D0VE66 [details] [associations]
symbol:LOC100623625 "Tristetraprolin" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:FP102918 EMBL:FP236263
EMBL:GU066778 EMBL:HM484335 EMBL:HM480487 RefSeq:NP_001161891.1
RefSeq:XP_003355955.1 UniGene:Ssc.28024 STRING:D0VE66
Ensembl:ENSSSCT00000011714 Ensembl:ENSSSCT00000026750
GeneID:100316849 GeneID:100623625 KEGG:ssc:100316849
KEGG:ssc:100623625 Uniprot:D0VE66
Length = 326
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 22 PGTETGPEGLG-VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG 80
PG E P + R C + +G C YG++C+F H G + A+R
Sbjct: 82 PGPELSPSPTSPTSTPTTSSRYKTELCRTFSESGRCRYGAKCQFAH--GLGELRQASR-- 137
Query: 81 GGEFPERVGQPVCQYYMRTGTCKYGASCKY-HHPRQ-----GAGSVSNVSLNYYGYP 131
P+ + ++Y++ G C YG+ C + H+P + G V S+++ G P
Sbjct: 138 ---HPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLP 190
Score = 90 (36.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C+ + +G C+YGA C++ H G G + S +P E +Y++ R C +G
Sbjct: 107 LCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HPKYKTELCHKFYLQGR-CPYG 158
Query: 152 ATCKFHH 158
+ C F H
Sbjct: 159 SRCHFIH 165
Score = 71 (30.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/88 (31%), Positives = 33/88 (37%)
Query: 320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACK------FDHP 373
SSC F P D+ LSP PG C P+C+ P
Sbjct: 208 SSCSFSPSSSPPPPPGDLPLSPSAFSAAPGTPVARRDPTPACC---PSCRRATPSSIWGP 264
Query: 374 MGMLSYSPSASSLADMPVAPYPVGSSIG 401
+G L SPSA SL P GSS+G
Sbjct: 265 LGGLPRSPSAHSLGSDPDEYASSGSSLG 292
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 76 (31.8 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 92 VCQYYMRTGTCKYGASCKYHH--PRQGAG 118
+C+YY + G C YGA C+Y H P AG
Sbjct: 36 ICKYYQK-GYCAYGARCRYDHTKPPAAAG 63
Score = 66 (28.3 bits), Expect = 0.00042, Sum P(4) = 0.00042
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 FPERPGQQECQYYMK-TGDCKFGSSCRFHH 326
F + G++ C+Y+ + G C FGS C + H
Sbjct: 318 FKQGMGKKACKYFEQGKGTCPFGSKCLYRH 347
Score = 57 (25.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 305 QECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPF 342
Q C Y G+C+FG +C + H + ++ V L PF
Sbjct: 169 QLCPY-AAAGECRFGDACVYLHGDMCEICRLQV-LHPF 204
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH--PMGMLS 378
G C ++ Q +G C FG C + H P G L+
Sbjct: 323 GKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLA 355
Score = 48 (22.0 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 44 EADCIHYVRTGFCAYGSRCRFNH 66
+ C +++ G C GS+C F+H
Sbjct: 5 QVTCRYFMH-GVCREGSQCLFSH 26
Score = 42 (19.8 bits), Expect = 0.00042, Sum P(4) = 0.00042
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 136 EKECSYYMKTRQCKFGATCKFHH 158
E + Y +C+FG C + H
Sbjct: 167 EPQLCPYAAAGECRFGDACVYLH 189
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 82 (33.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/85 (25%), Positives = 34/85 (40%)
Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR---ELIVPKMDVTLSP--FGLPLR 347
+++ P R C+ + G C FG+ C F H E + + T P +
Sbjct: 125 KEQRPIRPRRRNVPCRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQSQEWK 184
Query: 348 PGAAPCTHYVQRGVCKFGPACKFDH 372
P A C + G C +G C+F H
Sbjct: 185 PRGALCRTFSAFGFCLYGTRCRFQH 209
Score = 79 (32.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
C Y TG C Y RC+F H V P+ + +C+ Y G C YG
Sbjct: 65 CSRYAETGTCKYAERCQFAHGLHDLHVPS-------RHPKYKTE-LCRTYHTAGYCVYGT 116
Query: 107 SCKYHH 112
C + H
Sbjct: 117 RCLFVH 122
Score = 77 (32.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C Y TGTCKY C++ H G + +V + Y + C Y C +G
Sbjct: 64 LCSRYAETGTCKYAERCQFAH---GLHDL-HVPSRHPKYKT----ELCRTYHTAGYCVYG 115
Query: 152 ATCKFHH 158
C F H
Sbjct: 116 TRCLFVH 122
>UNIPROTKB|E2RKS9 [details] [associations]
symbol:ZFP36 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071889 "14-3-3 protein binding"
evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0050779 "RNA destabilization" evidence=IEA] [GO:0050728
"negative regulation of inflammatory response" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0035925 "mRNA 3'-UTR AU-rich region binding"
evidence=IEA] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA] [GO:0019957 "C-C chemokine binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005829 GO:GO:0005634
GO:GO:0006950 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0010494
GO:GO:0060213 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GeneTree:ENSGT00530000063262 GO:GO:0032680 GO:GO:0050779
OMA:RRLPIFN EMBL:AAEX03000957 Ensembl:ENSCAFT00000008910
Uniprot:E2RKS9
Length = 324
Score = 82 (33.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 30/116 (25%), Positives = 46/116 (39%)
Query: 22 PGTETGPEGLGVGAESYPERPDEAD-CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAG 80
PG E P A + + C + +G C YG++C+F H G + A+R
Sbjct: 81 PGPELSPSPTSPTATPTTSSRYKTELCRTFSESGRCRYGAKCQFAH--GLGELRQASR-- 136
Query: 81 GGEFPERVGQPVCQYYMRTGTCKYGASCKY-HHPRQ----GAGSVSNVSLNYYGYP 131
P + VC + G C YG+ C + P G V S+++ G P
Sbjct: 137 ---HP-KYKTKVCHKFYLQGGCPYGSRCHFIPFPEDLAAPGHPHVLRQSISFSGLP 188
Score = 80 (33.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
+C+ + +G C+YGA C++ H G G + S +P + K C + C +G
Sbjct: 106 LCRTFSESGRCRYGAKCQFAH---GLGELRQASR----HP-KYKTKVCHKFYLQGGCPYG 157
Query: 152 ATCKF 156
+ C F
Sbjct: 158 SRCHF 162
Score = 78 (32.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 30/88 (34%), Positives = 36/88 (40%)
Query: 320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP------ 373
SSC F P D+ LSP PG P VC P+C+ P
Sbjct: 206 SSCSFSPSSSPPPPPGDLPLSPSAFSAAPGT-PVARRDPTTVCC--PSCRRATPSSVWGP 262
Query: 374 MGMLSYSPSASSLADMPVAPYPVGSSIG 401
+G L+ SPSA SL P GSS+G
Sbjct: 263 LGGLARSPSAQSLGSDPEEYASSGSSLG 290
>ZFIN|ZDB-GENE-030131-9399 [details] [associations]
symbol:zc3h3 "zinc finger CCCH-type containing 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-9399 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000009627 CTD:23144 EMBL:CR848029 EMBL:CU694370
IPI:IPI00502745 RefSeq:XP_689680.3 UniGene:Dr.8949
Ensembl:ENSDART00000129803 GeneID:561182 KEGG:dre:561182
NextBio:20883798 Bgee:E7FH07 Uniprot:E7FH07
Length = 929
Score = 111 (44.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 37/130 (28%), Positives = 57/130 (43%)
Query: 47 CIHYVRTGFCAYGSRCRFNHPRDRGSVM-----GAARAGGGEFP--ERVGQ---PVCQYY 96
C++Y R G C +G+ C + H D+ +V G + G P +V + PVC Y+
Sbjct: 699 CMYYNRFGKCNHGNTCPYIHDPDKVAVCTRFLRGTCKKTDGTCPFSHKVAKEKMPVCSYF 758
Query: 97 MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYY-GYPLRPGEK-------ECSYYMKTRQC 148
++ G C +SC Y H + V ++ GY G+K C + T C
Sbjct: 759 LK-GICN-NSSCPYSHVY--VSRKAEVCEDFVRGY-CPQGDKCKKKHTLVCPDFSSTGVC 813
Query: 149 KFGATCKFHH 158
G+ CK HH
Sbjct: 814 PRGSKCKLHH 823
Score = 58 (25.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 26/102 (25%), Positives = 36/102 (35%)
Query: 307 CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLP--------LRPGAAPCTHYVQ 358
C + TG C GS C+ HH + K + + +G LR A T +
Sbjct: 804 CPDFSSTGVCPRGSKCKLHHRQS---KKRTGSNASYGAAKKACTRDVLRSSDAAQTQSSE 860
Query: 359 RGVCKFGPACKFDHPMGM---LSYSPSASSLADMPVAPYPVG 397
+ G +C + LS SP S D P P G
Sbjct: 861 STLADEGSSCSRPEKLPSFISLSSSPDGSENPDTPKIPPATG 902
>UNIPROTKB|B0F0H3 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8355 "Xenopus laevis" [GO:0005622
"intracellular" evidence=IC] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0009798 "axis specification" evidence=IMP]
[GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IMP]
[GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0050768 "negative
regulation of neurogenesis" evidence=IMP] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0005622
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 KO:K15687 HOVERGEN:HBG066965 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:EF626804 RefSeq:NP_001116070.1
UniGene:Xl.76333 GeneID:100141485 KEGG:xla:100141485 Uniprot:B0F0H3
Length = 409
Score = 73 (30.8 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 92 VCQYYMRTGTCKYGASCKYHHPRQGAGSV 120
VC++++R G C YG C+Y H + G+V
Sbjct: 36 VCRFFLR-GQCAYGTRCRYDHVKPCNGTV 63
Score = 58 (25.5 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 42 PDEADCIHYVRTGFCAYGSRCRFNH 66
P + C +++ G C GSRC F+H
Sbjct: 3 PKQVTCRYFLH-GVCREGSRCLFSH 26
Score = 53 (23.7 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 298 FPERPGQQECQYYMKTGDCKFGSSCRFHH 326
+P P QQ C + + G+C G SC + H
Sbjct: 155 YPGAP-QQLCPF-AQAGECHCGDSCPYLH 181
Score = 49 (22.3 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 349 GAAPCTHYVQ-RGVCKFGPACKFDH 372
G C ++ Q RG C FG C + H
Sbjct: 315 GKKLCKYFDQGRGTCPFGGKCLYLH 339
>UNIPROTKB|P26651 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0050779 "RNA destabilization" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IMP;IDA] [GO:0006402
"mRNA catabolic process" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019957 "C-C chemokine binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0019901 "protein kinase binding"
evidence=IPI] [GO:0006950 "response to stress" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0071889
"14-3-3 protein binding" evidence=IDA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA] [GO:1900153
"positive regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA;TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0003727 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483
CTD:7538 KO:K15308 EMBL:M92843 EMBL:M92844 EMBL:M63625
EMBL:AK314042 EMBL:AY771351 EMBL:BC009693 IPI:IPI00000893
PIR:S34427 RefSeq:NP_003398.2 UniGene:Hs.534052
ProteinModelPortal:P26651 SMR:P26651 DIP:DIP-29845N IntAct:P26651
MINT:MINT-1171915 STRING:P26651 PhosphoSite:P26651 DMDM:136471
PRIDE:P26651 DNASU:7538 Ensembl:ENST00000248673 GeneID:7538
KEGG:hsa:7538 UCSC:uc002olh.1 GeneCards:GC19P039897 HGNC:HGNC:12862
HPA:HPA006009 MIM:190700 neXtProt:NX_P26651 PharmGKB:PA37451
InParanoid:P26651 OMA:RRLPIFN OrthoDB:EOG4S4PH4 PhylomeDB:P26651
ChiTaRS:ZFP36 GenomeRNAi:7538 NextBio:29497 Bgee:P26651
CleanEx:HS_ZFP36 Genevestigator:P26651 GermOnline:ENSG00000128016
Uniprot:P26651
Length = 326
Score = 95 (38.5 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 36/129 (27%), Positives = 55/129 (42%)
Query: 15 PSPEWTAP-----GTETGPEGLGVGAESY-PERPDEADCIHYVRTGFCAYGSRCRFNHPR 68
P P AP G E P A S P R C + +G C YG++C+F H
Sbjct: 71 PPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAH-- 128
Query: 69 DRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKY-HHPRQ-----GAGSVSN 122
G +G R P+ + ++Y++ G C YG+ C + H+P + G V
Sbjct: 129 --G--LGELRQAN-RHPKYKTELCHKFYLQ-GRCPYGSRCHFIHNPSEDLAAPGHPPVLR 182
Query: 123 VSLNYYGYP 131
S+++ G P
Sbjct: 183 QSISFSGLP 191
Score = 59 (25.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 28/88 (31%), Positives = 34/88 (38%)
Query: 320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP------ 373
SS F P P D+ LSP PG P VC P+C+ P
Sbjct: 209 SSSSFS-PSSSPPPPGDLPLSPSAFSAAPGT-PLARRDPTPVCC--PSCRRATPISVWGP 264
Query: 374 MGMLSYSPSASSLADMPVAPYPVGSSIG 401
+G L +PS SL P GSS+G
Sbjct: 265 LGGLVRTPSVQSLGSDPDEYASSGSSLG 292
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.435 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 476 375 0.00088 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 610 (65 KB)
Total size of DFA: 261 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.28u 0.11s 29.39t Elapsed: 00:00:01
Total cpu time: 29.28u 0.11s 29.39t Elapsed: 00:00:01
Start: Mon May 20 16:54:51 2013 End: Mon May 20 16:54:52 2013