Query 011853
Match_columns 476
No_of_seqs 382 out of 1733
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.5 2E-14 6.8E-19 117.1 5.8 69 41-146 7-75 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 1.4E-14 4.8E-19 117.0 3.8 69 40-116 8-76 (77)
3 2cqe_A KIAA1064 protein; CCCH 99.4 1.7E-14 5.7E-19 123.0 1.3 88 37-147 6-95 (98)
4 1m9o_A Tristetraproline; Cys3H 99.4 1.7E-13 5.9E-18 110.6 3.8 68 86-161 8-75 (77)
5 2rhk_C Cleavage and polyadenyl 99.3 1.7E-12 5.9E-17 104.6 3.5 58 40-116 12-69 (72)
6 2d9n_A Cleavage and polyadenyl 99.3 2.4E-12 8.3E-17 104.8 4.4 58 88-164 8-65 (77)
7 2rhk_C Cleavage and polyadenyl 99.2 2E-12 6.9E-17 104.2 2.9 57 88-163 14-70 (72)
8 2cqe_A KIAA1064 protein; CCCH 99.2 4.7E-12 1.6E-16 107.8 4.9 52 87-161 10-61 (98)
9 3d2q_A Muscleblind-like protei 99.2 1.6E-11 5.4E-16 98.2 3.9 60 43-115 5-65 (70)
10 2e5s_A Otthump00000018578; ZF- 99.1 1.7E-11 5.7E-16 104.5 2.2 61 43-116 19-80 (98)
11 3d2q_A Muscleblind-like protei 99.0 1.2E-10 4E-15 93.2 3.0 60 89-161 5-65 (70)
12 2e5s_A Otthump00000018578; ZF- 98.9 1.2E-10 4.2E-15 99.1 0.7 62 88-162 18-80 (98)
13 3d2n_A Muscleblind-like protei 98.9 6.4E-10 2.2E-14 92.0 3.9 59 43-116 8-67 (83)
14 3d2n_A Muscleblind-like protei 98.8 1.2E-09 4E-14 90.5 3.0 59 89-162 8-67 (83)
15 2rpp_A Muscleblind-like protei 98.8 1.8E-09 6.3E-14 90.4 3.7 57 44-115 17-74 (89)
16 2rpp_A Muscleblind-like protei 98.8 2.4E-09 8.3E-14 89.7 4.4 59 89-162 16-75 (89)
17 3u9g_A Zinc finger CCCH-type a 98.5 5.5E-08 1.9E-12 93.6 3.4 85 43-161 88-198 (229)
18 3u9g_A Zinc finger CCCH-type a 98.0 3.1E-06 1E-10 81.5 5.1 43 305-375 152-198 (229)
19 2lhn_A Nuclear polyadenylated 97.3 6E-07 2.1E-11 73.7 0.0 67 43-162 8-74 (80)
20 2d9m_A Zinc finger CCCH-type d 97.4 4.3E-05 1.5E-09 60.9 1.1 29 43-72 19-47 (69)
21 2d9m_A Zinc finger CCCH-type d 96.4 0.00081 2.8E-08 53.6 1.3 28 89-117 19-46 (69)
22 2lhn_A Nuclear polyadenylated 95.2 0.00072 2.5E-08 55.4 0.0 42 90-159 9-50 (80)
23 2fc6_A Nuclear, target of EGR1 95.5 0.0038 1.3E-07 46.5 1.3 29 88-116 18-46 (50)
24 2fc6_A Nuclear, target of EGR1 95.5 0.0055 1.9E-07 45.7 1.9 29 42-70 18-46 (50)
25 3u1l_A PRE-mRNA-splicing facto 92.2 0.036 1.2E-06 53.7 1.0 26 136-162 70-95 (240)
26 3u1l_A PRE-mRNA-splicing facto 92.1 0.043 1.5E-06 53.2 1.4 27 43-70 69-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 72.4 0.76 2.6E-05 44.2 0.0 26 135-163 191-216 (223)
28 3v33_A Ribonuclease ZC3H12A; r 66.9 1.2 4E-05 42.9 0.0 25 89-116 191-215 (223)
29 2kqb_A Aprataxin and PNK-like 46.7 12 0.00041 31.0 2.8 22 358-379 55-76 (89)
30 2kuo_A Aprataxin and PNK-like 38.9 7 0.00024 32.5 0.2 14 358-371 60-73 (91)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=117.13 Aligned_cols=69 Identities=28% Similarity=0.689 Sum_probs=58.5
Q ss_pred CCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 011853 41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV 120 (476)
Q Consensus 41 Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~ 120 (476)
..++.+|+||++ |.|++|++|+|+|+.+.. ++++|+||+++|.|. |++|+|.|.....
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~--- 64 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES--- 64 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS---
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc---
Confidence 357899999997 999999999999997641 456899999999999 8999999987643
Q ss_pred CccccCCCCCCCCCCccccccccccc
Q 011853 121 SNVSLNYYGYPLRPGEKECSYYMKTR 146 (476)
Q Consensus 121 ~~~~ln~~g~P~rp~~~~C~~f~ktG 146 (476)
++++|.+|++ |
T Consensus 65 --------------~~~~C~~f~~-g 75 (77)
T 2d9n_A 65 --------------KIKDCPWSGP-S 75 (77)
T ss_dssp --------------SCSSSSCCTT-T
T ss_pred --------------cCCCCccccc-C
Confidence 3469999987 5
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.48 E-value=1.4e-14 Score=117.00 Aligned_cols=69 Identities=25% Similarity=0.601 Sum_probs=30.2
Q ss_pred CCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 40 ~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
.++++.+|++|+++|.|++|++|+|+|+.++.+... ...+.++.+|++|..+|.|++|++|+|+|...+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 456999999998889999999999999998764211 112467889998887799999999999998653
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.43 E-value=1.7e-14 Score=122.96 Aligned_cols=88 Identities=26% Similarity=0.417 Sum_probs=69.5
Q ss_pred CCCCCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 37 ~yp~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
.+..+.++.+|+||+ +|.|++|++|+|+|+ +.+|++|+++|.|++|++|+|+|+...
T Consensus 6 ~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 6 SGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred cCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 456677999999997 599999999999999 237999986699999999999998653
Q ss_pred CCCC--CccccCCCCCCCCCCcccccccccccc
Q 011853 117 AGSV--SNVSLNYYGYPLRPGEKECSYYMKTRQ 147 (476)
Q Consensus 117 ~~~~--~~~~ln~~g~P~rp~~~~C~~f~ktG~ 147 (476)
.... ....++..+++.+.++++|.++.|+|.
T Consensus 63 ~~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 63 EETRELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred ccchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 2100 011244456788899999999999874
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.38 E-value=1.7e-13 Score=110.58 Aligned_cols=68 Identities=24% Similarity=0.618 Sum_probs=29.2
Q ss_pred CCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853 86 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (476)
Q Consensus 86 er~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~ 161 (476)
.++++.+|++|+++|.|++|++|+|+|+..+..... ...+.++.+|++|+++|.|++|++|+|+|...
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 347899999999779999999999999987653211 01133567999888789999999999999874
No 5
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=104.62 Aligned_cols=58 Identities=28% Similarity=0.701 Sum_probs=50.3
Q ss_pred CCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 40 ~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
.+.++.+|+||++ |.|++|++|+|+|+.+. .++++|+||+++|.|.+ ++|+|.|....
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~-----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------TKMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT-----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCcccccc-----------------ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3457899999998 99999999999999654 24678999999999999 89999998764
No 6
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=104.77 Aligned_cols=58 Identities=31% Similarity=0.712 Sum_probs=50.3
Q ss_pred CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCCCC
Q 011853 88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV 164 (476)
Q Consensus 88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~~ 164 (476)
.++.+|+||++ |.|++|++|+|+|+.... +.++|+||+++|.|. |++|+|.|..+...
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 57889999999 999999999999987642 235899999989999 89999999987543
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.24 E-value=2e-12 Score=104.20 Aligned_cols=57 Identities=32% Similarity=0.718 Sum_probs=49.3
Q ss_pred CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCCC
Q 011853 88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAG 163 (476)
Q Consensus 88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~ 163 (476)
.++.+|+||++ |.|++|++|+|+|+.... +.++|+||++.|.|.+ ++|+|.|..+..
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 57789999999 999999999999987632 3458999998899999 999999998753
No 8
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.23 E-value=4.7e-12 Score=107.77 Aligned_cols=52 Identities=29% Similarity=0.742 Sum_probs=46.1
Q ss_pred CCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853 87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (476)
Q Consensus 87 r~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~ 161 (476)
+.++.+|+||++ |.|++|++|+|+|+ ..+|++|+++|.|++|++|+|.|...
T Consensus 10 ~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 358899999986 99999999999998 13899998679999999999999864
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.15 E-value=1.6e-11 Score=98.25 Aligned_cols=60 Identities=37% Similarity=0.783 Sum_probs=49.1
Q ss_pred CCcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCC
Q 011853 43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (476)
Q Consensus 43 gt~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~ 115 (476)
+.++|++|++ |.|.+|+ .|+|+|+.+...+ .+...++++|++|++ |.|.+| +|+|.|+..
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMI----------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC----------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCcccccc----------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 3579999986 9999999 5999999876431 122356889999999 999999 799999764
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=104.49 Aligned_cols=61 Identities=36% Similarity=0.755 Sum_probs=50.7
Q ss_pred CCcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 43 gt~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
+.++|++|++ |.|.+|+ .|+|+|+.+...+ .+...++++|++|++ |.|.++ +|+|.|+...
T Consensus 19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc----------cccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence 5689999998 9999999 7999999886431 122357789999999 999999 7999998763
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.00 E-value=1.2e-10 Score=93.20 Aligned_cols=60 Identities=30% Similarity=0.697 Sum_probs=47.5
Q ss_pred CCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853 89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (476)
Q Consensus 89 ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~ 161 (476)
+..+|++|++ |.|++|+ .|+|+|+....... +......+|.+|++ |.|.+| .|+|.|+.+
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 4578999998 9999998 59999988643110 11124579999999 999999 999999875
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-10 Score=99.09 Aligned_cols=62 Identities=27% Similarity=0.630 Sum_probs=49.4
Q ss_pred CCCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853 88 VGQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (476)
Q Consensus 88 ~ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~ 162 (476)
.+..+|++|++ |.|++|+ .|+|+|+.+..... +......+|.+|++ |.|.++ +|+|.|+.+.
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence 36679999999 9999998 79999998753110 11124579999999 999998 9999998754
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.90 E-value=6.4e-10 Score=92.00 Aligned_cols=59 Identities=29% Similarity=0.625 Sum_probs=48.4
Q ss_pred CCcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 43 gt~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
+.++|++|++ |.|.+|+ .|+|+|+.....+. ..+.++|.+|++ |.|.++ +|+|.|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence 4478999998 9999997 99999998753210 135679999999 999998 7999998763
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.83 E-value=1.2e-09 Score=90.46 Aligned_cols=59 Identities=32% Similarity=0.702 Sum_probs=47.4
Q ss_pred CCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853 89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (476)
Q Consensus 89 ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~ 162 (476)
+..+|++|++ |.|++|+ .|+|+|+..... ++ .....+|.+|++ |.|.++ .|+|.|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~----~~--------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQ----VE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCC----EE--------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccc----cc--------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence 5579999999 9999996 899999987431 11 113469999999 999998 9999998754
No 15
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=90.38 Aligned_cols=57 Identities=30% Similarity=0.668 Sum_probs=48.0
Q ss_pred CcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCC
Q 011853 44 EADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ 115 (476)
Q Consensus 44 t~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~ 115 (476)
.++|++|+| |.|.+|+ .|+|+|+.+...+. ..+.++|.+|++ |.|.++ +|+|.|+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 478999998 9999998 99999998764211 135789999999 999998 699999876
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=89.66 Aligned_cols=59 Identities=31% Similarity=0.673 Sum_probs=47.5
Q ss_pred CCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853 89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (476)
Q Consensus 89 ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~ 162 (476)
+.++|++|++ |.|++|+ .|+|+|+..... ++ .....+|.+|++ |.|.++ .|+|.|+...
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~----v~--------~~~~~vC~dflk-G~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQ----VE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSC----CB--------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcccc----cc--------CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence 4568999999 9999997 999999987531 11 113469999999 999987 9999999753
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.47 E-value=5.5e-08 Score=93.59 Aligned_cols=85 Identities=20% Similarity=0.445 Sum_probs=64.0
Q ss_pred CCcCCcchhccCCCC----CCCCCCCCCCCCCCCccccc------------------cCCCCCCCCCCCCcCccccccc-
Q 011853 43 DEADCIHYVRTGFCA----YGSRCRFNHPRDRGSVMGAA------------------RAGGGEFPERVGQPVCQYYMRT- 99 (476)
Q Consensus 43 gt~~C~~f~rtG~C~----~Gd~CkF~H~~~~~~~~~~~------------------r~~~~~~Per~ktp~C~~flrt- 99 (476)
.-.+|++|+- |.|+ .+..|+|.|+.....+..-. .+...-+|| +|.+| +.
T Consensus 88 ~LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPe-----iC~~Y-kG~ 160 (229)
T 3u9g_A 88 SLHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPE-----ICKSY-KGE 160 (229)
T ss_dssp SBCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCC-----BCTTC-CCS
T ss_pred ceeechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCch-----HHHHh-CCC
Confidence 3478999995 9993 45789999998764321111 111123454 89999 73
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853 100 ---GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP 161 (476)
Q Consensus 100 ---G~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~ 161 (476)
|.|+++++|...| +|.+|++ |.|+| ..|+-.|...
T Consensus 161 g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 161 GRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp SSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred CCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence 5899999999898 8999998 99999 8999999864
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.05 E-value=3.1e-06 Score=81.53 Aligned_cols=43 Identities=30% Similarity=0.729 Sum_probs=38.5
Q ss_pred cccccccc----CCCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCCC
Q 011853 305 QECQYYMK----TGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMG 375 (476)
Q Consensus 305 ~~C~yy~k----~G~Ck~G~~Ckf~Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf~Hp~~ 375 (476)
.+|.+| | .|.|++++.|...| +|.|| ..|.|+| .+||-.|...
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~F-l~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHF-TRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHH-HTTCCCC-SSCSSCCCTT
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchh-hcCCcCC-CCccCccCcc
Confidence 689999 7 36899999999999 59999 8999999 8999999863
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=6e-07 Score=73.68 Aligned_cols=67 Identities=27% Similarity=0.730 Sum_probs=53.7
Q ss_pred CCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 011853 43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN 122 (476)
Q Consensus 43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~ 122 (476)
..+.|+||. .|.+ .+|.|.|+.. ...|+|+.. |++ ..|.|.|+..
T Consensus 8 ~~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------~~~Cr~g~~---C~~-~~C~f~HP~~------- 52 (80)
T 2lhn_A 8 SLEQCKFGT---HCTN-KRCKYRHARS--------------------HIMCREGAN---CTR-IDCLFGHPIN------- 52 (80)
Confidence 357899998 5999 9999999743 136999976 988 5699999732
Q ss_pred cccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853 123 VSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA 162 (476)
Q Consensus 123 ~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~ 162 (476)
+.|+|+.. |.+ ..|.|.|+.-.
T Consensus 53 --------------~~Crf~~~---C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 53 --------------EDCRFGVN---CKN-IYCLFRHPPGR 74 (80)
Confidence 37999876 997 89999998643
No 20
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=4.3e-05 Score=60.91 Aligned_cols=29 Identities=28% Similarity=0.583 Sum_probs=26.0
Q ss_pred CCcCCcchhccCCCCCCCCCCCCCCCCCCC
Q 011853 43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGS 72 (476)
Q Consensus 43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~ 72 (476)
+..+|..|. +|.|+||++|.|+|+.++++
T Consensus 19 k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr 47 (69)
T 2d9m_A 19 YFSICDRYM-NGTCPEGNSCKFAHGNAELH 47 (69)
T ss_dssp CCSBCHHHH-HSCCSSCSSCSSBSSHHHHH
T ss_pred CcccCcccC-cCCCCCCCccCCcCCHHHHh
Confidence 559999995 69999999999999998865
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.43 E-value=0.00081 Score=53.60 Aligned_cols=28 Identities=39% Similarity=0.800 Sum_probs=24.3
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCCCC
Q 011853 89 GQPVCQYYMRTGTCKYGASCKYHHPRQGA 117 (476)
Q Consensus 89 ktp~C~~flrtG~Ck~G~~CkF~H~~~~~ 117 (476)
+..+|++|++ |.|+||++|.|+|...+.
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence 5589999966 999999999999987754
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.24 E-value=0.00072 Score=55.40 Aligned_cols=42 Identities=31% Similarity=0.713 Sum_probs=35.1
Q ss_pred CcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCC
Q 011853 90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP 159 (476)
Q Consensus 90 tp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp 159 (476)
.+.|+||.. |++ ..|.|.|+... ..|+|+.. |.+ .+|.|.|+
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~--------------------~~Cr~g~~---C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH--------------------IMCREGAN---CTR-IDCLFGHP 50 (80)
Confidence 458999988 998 88999997642 37999866 997 88999997
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.55 E-value=0.0038 Score=46.50 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=26.4
Q ss_pred CCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 88 VGQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
.++.+|.-|...|+|++|.+|.+.|+.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 46789999999999999999999998874
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.46 E-value=0.0055 Score=45.68 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=26.9
Q ss_pred CCCcCCcchhccCCCCCCCCCCCCCCCCC
Q 011853 42 PDEADCIHYVRTGFCAYGSRCRFNHPRDR 70 (476)
Q Consensus 42 pgt~~C~~f~rtG~C~~Gd~CkF~H~~~~ 70 (476)
.++.+|.-|...|.|++|.+|.|.|+++-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 57899999999999999999999999874
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.16 E-value=0.036 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=23.5
Q ss_pred ccccccccccccCCCCCCCccCCCCCC
Q 011853 136 EKECSYYMKTRQCKFGATCKFHHPQPA 162 (476)
Q Consensus 136 ~~~C~~f~ktG~C~~G~~CrF~Hp~~~ 162 (476)
..+|.||.+ |.|.+|+.|.|.|..+.
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 359999999 99999999999998765
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.12 E-value=0.043 Score=53.22 Aligned_cols=27 Identities=22% Similarity=0.726 Sum_probs=23.5
Q ss_pred CCcCCcchhccCCCCCCCCCCCCCCCCC
Q 011853 43 DEADCIHYVRTGFCAYGSRCRFNHPRDR 70 (476)
Q Consensus 43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~ 70 (476)
...+|.||.| |.|.+|+.|.|+|....
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 3469999998 99999999999997543
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=72.39 E-value=0.76 Score=44.21 Aligned_cols=26 Identities=35% Similarity=0.989 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCCccCCCCCCC
Q 011853 135 GEKECSYYMKTRQCKFGATCKFHHPQPAG 163 (476)
Q Consensus 135 ~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~ 163 (476)
+..+|.|-.| |.+|.+|+|.|++...
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPERPS 216 (223)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCccCC
Confidence 3578999766 9999999999998754
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=66.88 E-value=1.2 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.938 Sum_probs=0.0
Q ss_pred CCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853 89 GQPVCQYYMRTGTCKYGASCKYHHPRQG 116 (476)
Q Consensus 89 ktp~C~~flrtG~Ck~G~~CkF~H~~~~ 116 (476)
+.+.|.|=. +|.||.+|||.|+...
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccC
Confidence 567899854 5999999999998764
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=46.69 E-value=12 Score=31.02 Aligned_cols=22 Identities=32% Similarity=0.846 Sum_probs=0.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCC
Q 011853 358 QRGVCKFGPACKFDHPMGMLSY 379 (476)
Q Consensus 358 ~~G~Ck~G~~Crf~Hp~~~~~~ 379 (476)
.+-.|+||.+|--..|.....|
T Consensus 55 ~~p~C~YG~~CYRkNp~H~~ey 76 (89)
T 2kqb_A 55 DRPECPYGPSCYRKNPQHKIEY 76 (89)
T ss_dssp C---------------------
T ss_pred CCCCCCCchhhhcCCHHHHHhc
Confidence 3557999999976555544444
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=38.91 E-value=7 Score=32.51 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=10.1
Q ss_pred ccCCCCCCCCCCCC
Q 011853 358 QRGVCKFGPACKFD 371 (476)
Q Consensus 358 ~~G~Ck~G~~Crf~ 371 (476)
.+-.|+||.+|--.
T Consensus 60 ~~p~C~YG~~CYRk 73 (91)
T 2kuo_A 60 DRPECPYGPSCYRK 73 (91)
T ss_dssp TSCBCTTGGGCCCC
T ss_pred CCCCCCCchhhhcC
Confidence 35579999999633
Done!