Query 011854
Match_columns 476
No_of_seqs 354 out of 1684
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 99.9 2.7E-24 9.3E-29 188.8 7.7 120 113-245 3-124 (126)
2 2jtn_A LIM domain-binding prot 99.9 5.9E-24 2E-28 198.6 10.3 124 110-245 57-180 (182)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 3.2E-24 1.1E-28 189.5 6.8 122 113-246 2-127 (131)
4 2rgt_A Fusion of LIM/homeobox 99.9 5.1E-24 1.7E-28 196.8 7.3 125 111-247 4-128 (169)
5 1rut_X Flinc4, fusion protein 99.9 1.5E-23 5.1E-28 196.9 4.1 125 111-247 3-131 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.9 4.7E-22 1.6E-26 187.2 8.3 130 111-256 5-182 (192)
7 2cup_A Skeletal muscle LIM-pro 99.8 8E-21 2.7E-25 160.2 7.3 98 111-219 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.7 2.8E-19 9.7E-24 156.5 2.5 109 111-247 3-115 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 1.5E-17 5E-22 143.9 5.9 103 112-246 2-106 (114)
10 1iml_A CRIP, cysteine rich int 99.6 5.9E-16 2E-20 123.9 4.4 71 114-184 1-72 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.6 3.1E-16 1.1E-20 127.1 2.7 74 110-183 4-77 (81)
12 2cu8_A Cysteine-rich protein 2 99.5 2.4E-15 8.3E-20 120.3 4.8 70 109-178 5-75 (76)
13 2dj7_A Actin-binding LIM prote 99.5 2.8E-15 9.4E-20 121.7 4.9 67 111-178 13-79 (80)
14 1x68_A FHL5 protein; four-and- 99.5 3.8E-15 1.3E-19 119.3 5.0 69 112-180 4-75 (76)
15 2dar_A PDZ and LIM domain prot 99.5 8.1E-15 2.8E-19 121.2 6.1 68 110-178 22-89 (90)
16 2cur_A Skeletal muscle LIM-pro 99.5 5.9E-15 2E-19 115.8 4.0 67 111-178 3-69 (69)
17 2d8y_A Eplin protein; LIM doma 99.5 1.4E-14 4.7E-19 120.1 6.2 74 111-184 13-86 (91)
18 2d8z_A Four and A half LIM dom 99.5 9.8E-15 3.3E-19 114.7 4.4 67 111-178 3-69 (70)
19 1x4l_A Skeletal muscle LIM-pro 99.5 1.5E-14 5.2E-19 114.3 4.6 66 111-176 3-71 (72)
20 1wyh_A SLIM 2, skeletal muscle 99.5 1.2E-14 4E-19 114.8 3.8 67 112-178 4-71 (72)
21 1x4k_A Skeletal muscle LIM-pro 99.5 1.6E-14 5.4E-19 114.0 4.4 67 112-178 4-71 (72)
22 1nyp_A Pinch protein; LIM doma 99.5 1.3E-14 4.4E-19 112.9 3.2 63 112-175 4-66 (66)
23 2ehe_A Four and A half LIM dom 99.5 2.9E-14 9.9E-19 115.6 5.3 68 111-178 13-81 (82)
24 1g47_A Pinch protein; LIM doma 99.5 1.9E-14 6.4E-19 115.1 4.1 67 111-177 9-76 (77)
25 2co8_A NEDD9 interacting prote 99.5 5.9E-14 2E-18 114.2 6.3 68 109-176 11-80 (82)
26 2dlo_A Thyroid receptor-intera 99.5 4.3E-14 1.5E-18 114.3 5.3 67 111-178 13-80 (81)
27 1x64_A Alpha-actinin-2 associa 99.4 7.6E-14 2.6E-18 115.1 6.2 66 111-177 23-88 (89)
28 1x62_A C-terminal LIM domain p 99.4 2.9E-14 9.9E-19 115.0 3.3 66 111-177 13-78 (79)
29 2d8x_A Protein pinch; LIM doma 99.4 4.2E-14 1.4E-18 111.2 3.9 66 111-177 3-68 (70)
30 1x3h_A Leupaxin; paxillin fami 99.4 4.9E-14 1.7E-18 113.6 4.2 67 111-178 13-79 (80)
31 2cuq_A Four and A half LIM dom 99.4 8.5E-14 2.9E-18 112.2 4.5 67 111-178 13-79 (80)
32 1x61_A Thyroid receptor intera 99.4 8.2E-14 2.8E-18 110.0 4.0 68 111-179 3-71 (72)
33 2cor_A Pinch protein; LIM doma 99.4 1E-13 3.5E-18 112.0 4.3 65 111-177 13-77 (79)
34 1b8t_A Protein (CRP1); LIM dom 99.4 1.4E-13 4.8E-18 129.2 3.9 75 111-185 113-187 (192)
35 1x63_A Skeletal muscle LIM-pro 99.4 2.4E-13 8.2E-18 110.0 4.6 67 111-177 13-80 (82)
36 1wig_A KIAA1808 protein; LIM d 99.4 2.6E-13 8.8E-18 108.0 4.4 64 111-175 3-67 (73)
37 1x6a_A LIMK-2, LIM domain kina 99.4 4.8E-13 1.6E-17 108.1 5.9 76 159-247 1-76 (81)
38 2cuq_A Four and A half LIM dom 99.4 7.2E-13 2.5E-17 106.7 6.4 78 159-253 1-78 (80)
39 2egq_A FHL1 protein; LIM domai 99.4 5.9E-13 2E-17 106.4 5.4 73 159-244 1-76 (77)
40 2ehe_A Four and A half LIM dom 99.3 5.3E-13 1.8E-17 108.1 4.7 80 159-253 1-80 (82)
41 2l4z_A DNA endonuclease RBBP8, 99.3 4.7E-13 1.6E-17 117.4 4.6 63 111-173 59-123 (123)
42 3f6q_B LIM and senescent cell 99.3 5.7E-13 2E-17 104.6 3.8 63 111-173 9-72 (72)
43 2dlo_A Thyroid receptor-intera 99.3 1.7E-12 5.7E-17 105.0 6.5 78 159-253 2-79 (81)
44 1x3h_A Leupaxin; paxillin fami 99.3 1.8E-12 6E-17 104.4 6.0 78 159-253 1-78 (80)
45 2l3k_A Rhombotin-2, linker, LI 99.3 1.3E-12 4.5E-17 114.2 5.5 73 114-186 9-83 (123)
46 1x6a_A LIMK-2, LIM domain kina 99.3 1.1E-12 3.9E-17 105.9 4.1 67 111-178 13-81 (81)
47 1x63_A Skeletal muscle LIM-pro 99.3 3.7E-12 1.3E-16 102.9 6.0 76 159-247 1-76 (82)
48 2iyb_E Testin, TESS, TES; LIM 99.3 1.4E-12 4.8E-17 101.2 3.1 59 113-171 2-64 (65)
49 2egq_A FHL1 protein; LIM domai 99.3 2.1E-12 7.3E-17 103.1 4.1 60 111-170 13-76 (77)
50 1v6g_A Actin binding LIM prote 99.2 1.5E-11 5.3E-16 99.2 6.1 74 160-247 2-75 (81)
51 1v6g_A Actin binding LIM prote 99.1 6.5E-11 2.2E-15 95.5 3.7 61 111-172 13-74 (81)
52 1rut_X Flinc4, fusion protein 98.9 3.1E-10 1.1E-14 106.0 3.6 67 115-181 71-139 (188)
53 2xjy_A Rhombotin-2; oncoprotei 98.9 4.4E-10 1.5E-14 98.5 2.2 60 115-174 68-129 (131)
54 1wig_A KIAA1808 protein; LIM d 98.9 1.8E-09 6.1E-14 85.6 4.8 64 170-247 2-65 (73)
55 2xqn_T Testin, TESS; metal-bin 98.8 1.6E-09 5.4E-14 94.4 4.1 61 112-172 62-125 (126)
56 1x68_A FHL5 protein; four-and- 98.8 2.4E-09 8.2E-14 85.3 4.4 71 170-255 2-74 (76)
57 2dar_A PDZ and LIM domain prot 98.8 5.6E-09 1.9E-13 85.9 6.5 76 161-253 13-88 (90)
58 1x4k_A Skeletal muscle LIM-pro 98.8 8.2E-09 2.8E-13 80.9 5.4 69 170-253 2-70 (72)
59 2d8z_A Four and A half LIM dom 98.7 9.2E-09 3.2E-13 80.3 5.3 67 170-253 2-68 (70)
60 2cur_A Skeletal muscle LIM-pro 98.7 1E-08 3.5E-13 79.8 5.2 66 171-253 3-68 (69)
61 2l3k_A Rhombotin-2, linker, LI 98.7 8.9E-09 3E-13 89.7 5.3 67 168-246 1-69 (123)
62 1wyh_A SLIM 2, skeletal muscle 98.7 1.1E-08 3.6E-13 80.3 4.9 69 170-253 2-70 (72)
63 1x61_A Thyroid receptor intera 98.7 1.6E-08 5.5E-13 79.3 5.8 64 171-247 3-66 (72)
64 1x4l_A Skeletal muscle LIM-pro 98.7 1.7E-08 6E-13 79.2 5.9 64 171-246 3-67 (72)
65 3f6q_B LIM and senescent cell 98.7 8.3E-09 2.9E-13 80.5 3.9 66 168-246 6-71 (72)
66 2jtn_A LIM domain-binding prot 98.7 1.8E-08 6.2E-13 93.5 6.6 84 159-259 43-129 (182)
67 1nyp_A Pinch protein; LIM doma 98.7 1E-08 3.4E-13 79.2 3.5 62 170-246 2-63 (66)
68 2iyb_E Testin, TESS, TES; LIM 98.7 1.3E-08 4.3E-13 78.7 4.0 61 172-245 1-64 (65)
69 2cup_A Skeletal muscle LIM-pro 98.6 1.7E-08 5.8E-13 84.4 4.7 74 171-259 3-76 (101)
70 1m3v_A FLIN4, fusion of the LI 98.6 6.5E-09 2.2E-13 90.4 1.5 76 171-259 3-79 (122)
71 2cu8_A Cysteine-rich protein 2 98.6 4.4E-08 1.5E-12 77.8 5.8 68 170-253 6-74 (76)
72 2d8x_A Protein pinch; LIM doma 98.6 4.2E-08 1.4E-12 76.6 5.3 62 171-247 3-64 (70)
73 2rgt_A Fusion of LIM/homeobox 98.6 1.8E-08 6.3E-13 92.3 3.7 64 113-176 65-131 (169)
74 1g47_A Pinch protein; LIM doma 98.6 3.4E-08 1.2E-12 78.4 4.5 67 171-252 9-75 (77)
75 2l4z_A DNA endonuclease RBBP8, 98.6 4E-08 1.4E-12 85.9 4.9 64 170-246 58-122 (123)
76 1iml_A CRIP, cysteine rich int 98.5 5.5E-08 1.9E-12 77.2 4.8 67 174-256 1-68 (76)
77 1a7i_A QCRP2 (LIM1); LIM domai 98.5 4.1E-08 1.4E-12 78.9 3.6 69 172-256 6-74 (81)
78 2cor_A Pinch protein; LIM doma 98.5 1.3E-07 4.5E-12 75.9 5.4 60 171-246 13-72 (79)
79 2dj7_A Actin-binding LIM prote 98.5 1.4E-07 4.7E-12 76.0 5.4 64 173-253 15-78 (80)
80 2d8y_A Eplin protein; LIM doma 98.5 1.4E-07 4.8E-12 77.6 5.3 67 171-253 13-79 (91)
81 1x62_A C-terminal LIM domain p 98.5 5.5E-08 1.9E-12 77.9 2.4 60 173-247 15-74 (79)
82 1x64_A Alpha-actinin-2 associa 98.4 1.2E-07 4.3E-12 77.6 4.5 60 172-246 24-83 (89)
83 1j2o_A FLIN2, fusion of rhombo 98.4 1.5E-07 5E-12 80.9 4.8 69 173-256 3-72 (114)
84 2co8_A NEDD9 interacting prote 98.4 1.6E-07 5.3E-12 76.0 3.4 62 173-247 15-77 (82)
85 1zfo_A LAsp-1; LIM domain, zin 97.3 5.6E-05 1.9E-09 50.0 1.2 28 114-141 4-31 (31)
86 1q0v_A Hydrophilic protein; ha 91.7 0.13 4.5E-06 41.1 3.6 46 42-87 9-66 (81)
87 2d3g_P Ubiquitin interacting m 88.1 0.25 8.5E-06 30.7 1.8 23 43-65 2-24 (26)
88 4ap4_A E3 ubiquitin ligase RNF 69.3 1.1 3.6E-05 37.7 0.2 101 141-256 8-120 (133)
89 3gge_A PDZ domain-containing p 68.3 0.49 1.7E-05 39.0 -2.0 32 316-347 42-73 (95)
90 1zfo_A LAsp-1; LIM domain, zin 67.9 2.6 9E-05 27.2 1.9 27 142-168 5-31 (31)
91 1ujd_A KIAA0559 protein; PDZ d 66.6 0.34 1.2E-05 40.7 -3.4 37 320-356 67-103 (117)
92 2db5_A INAD-like protein; PDZ 65.2 0.34 1.2E-05 41.3 -3.8 37 320-356 72-109 (128)
93 1jm7_B BARD1, BRCA1-associated 65.0 5.4 0.00019 33.2 3.8 44 141-184 23-66 (117)
94 2klz_A Ataxin-3; UIM, ubiquiti 62.6 4.2 0.00014 29.2 2.2 40 41-91 3-42 (52)
95 2djb_A Polycomb group ring fin 61.1 4.6 0.00016 30.4 2.5 46 141-186 16-63 (72)
96 2ysl_A Tripartite motif-contai 59.4 5.2 0.00018 29.9 2.5 45 141-186 21-70 (73)
97 2lob_A Golgi-associated PDZ an 63.5 2 6.8E-05 35.8 0.0 35 319-353 70-104 (112)
98 1uju_A Scribble; PDZ domain, c 58.6 0.74 2.5E-05 38.0 -2.7 34 320-353 62-95 (111)
99 1bor_A Transcription factor PM 58.0 11 0.00037 27.0 3.9 45 141-187 7-51 (56)
100 2awx_A Synapse associated prot 57.8 0.53 1.8E-05 38.5 -3.7 24 320-343 51-74 (105)
101 1v6b_A Harmonin isoform A1; st 56.6 0.53 1.8E-05 39.6 -4.0 28 320-347 61-88 (118)
102 4fgm_A Aminopeptidase N family 55.3 3.6 0.00012 44.5 1.2 42 357-398 267-321 (597)
103 2jrp_A Putative cytoplasmic pr 55.1 7.6 0.00026 31.0 2.8 60 114-186 3-64 (81)
104 3cia_A Cold-active aminopeptid 55.0 3.8 0.00013 44.2 1.4 39 359-397 296-336 (605)
105 3soe_A Membrane-associated gua 54.9 1.3 4.6E-05 37.5 -1.8 31 317-347 46-76 (113)
106 3e17_A Tight junction protein 54.6 0.56 1.9E-05 37.3 -4.0 31 320-350 39-69 (88)
107 2ejy_A 55 kDa erythrocyte memb 53.8 0.72 2.5E-05 37.8 -3.6 28 320-347 54-81 (97)
108 2ecy_A TNF receptor-associated 53.8 4.6 0.00016 29.8 1.3 45 141-186 16-63 (66)
109 1ufx_A KIAA1526 protein; PDZ d 53.5 1.5 5.2E-05 35.9 -1.6 29 319-347 49-77 (103)
110 2ysm_A Myeloid/lymphoid or mix 53.0 30 0.001 28.5 6.4 97 112-244 6-104 (111)
111 1r6j_A Syntenin 1; PDZ, membra 52.8 1.1 3.7E-05 35.7 -2.5 29 320-348 40-68 (82)
112 4etm_A LMPTP, low molecular we 52.5 7.1 0.00024 35.3 2.6 32 441-473 141-172 (173)
113 1z5h_A Tricorn protease intera 52.2 18 0.00062 40.2 6.3 42 357-398 259-302 (780)
114 1v62_A KIAA1719 protein; struc 51.6 0.82 2.8E-05 38.3 -3.7 37 320-356 60-96 (117)
115 2ehr_A INAD-like protein; PDZ 51.2 0.83 2.8E-05 38.1 -3.7 26 320-345 68-93 (117)
116 3rof_A Low molecular weight pr 50.6 7 0.00024 34.8 2.2 32 441-473 124-155 (158)
117 2rr9_C Putative uncharacterize 50.2 6.6 0.00022 27.3 1.4 42 44-91 3-44 (46)
118 2y43_A E3 ubiquitin-protein li 49.4 6.6 0.00023 31.4 1.7 45 141-185 23-69 (99)
119 3b76_A E3 ubiquitin-protein li 49.3 0.98 3.3E-05 38.2 -3.6 29 319-347 70-98 (118)
120 2ecv_A Tripartite motif-contai 49.2 11 0.00036 28.7 2.8 44 141-185 20-71 (85)
121 3egg_C Spinophilin; PP1, serin 49.0 0.91 3.1E-05 41.1 -4.0 29 319-347 128-156 (170)
122 4e34_A Golgi-associated PDZ an 48.9 0.61 2.1E-05 36.6 -4.6 25 319-343 45-69 (87)
123 1d5g_A Human phosphatase HPTP1 48.8 0.86 2.9E-05 36.4 -3.8 24 320-343 51-74 (96)
124 1wi4_A Synip, syntaxin binding 48.5 1.9 6.7E-05 35.6 -1.8 29 319-347 58-86 (109)
125 2byg_A Channel associated prot 48.2 0.83 2.9E-05 38.4 -4.2 25 320-344 72-96 (117)
126 1wf8_A Neurabin-I; PDZ domain, 47.7 0.89 3E-05 37.2 -4.0 23 320-342 58-80 (107)
127 2xq0_A LTA-4 hydrolase, leukot 47.5 4.9 0.00017 43.6 0.8 39 359-397 297-337 (632)
128 1wha_A KIAA0147 protein, scrib 47.5 1 3.6E-05 36.7 -3.6 26 321-346 57-82 (105)
129 2jil_A GRIP1 protein, glutamat 47.2 0.81 2.8E-05 36.6 -4.2 23 321-343 51-73 (97)
130 2vwr_A Ligand of NUMB protein 47.1 0.81 2.8E-05 36.5 -4.2 22 320-341 47-68 (95)
131 2yur_A Retinoblastoma-binding 47.1 12 0.0004 28.4 2.7 44 141-185 16-64 (74)
132 1q0v_A Hydrophilic protein; ha 47.1 18 0.00061 28.8 3.7 22 41-62 51-72 (81)
133 2g5m_B Neurabin-2; spinophilin 47.0 1 3.5E-05 37.2 -3.7 23 320-342 53-75 (113)
134 3a1q_C Ubiquitin interaction m 46.9 7.7 0.00026 26.8 1.4 40 43-88 5-44 (45)
135 1y7n_A Amyloid beta A4 precurs 46.8 0.85 2.9E-05 36.6 -4.1 28 320-347 48-75 (90)
136 3axa_A Afadin, nectin-3, prote 46.7 0.95 3.2E-05 37.0 -4.0 24 320-343 56-79 (106)
137 2dkr_A LIN-7 homolog B; LIN-7B 46.6 0.95 3.3E-05 35.8 -3.9 24 320-343 48-71 (93)
138 3qik_A Phosphatidylinositol 3, 46.5 0.88 3E-05 37.9 -4.1 38 319-356 55-95 (101)
139 1m5z_A GRIP, AMPA receptor int 46.5 0.89 3E-05 35.9 -4.0 20 320-339 49-68 (91)
140 3vk6_A E3 ubiquitin-protein li 46.5 8 0.00027 32.1 1.7 43 143-185 4-49 (101)
141 2i1n_A Discs, large homolog 3; 46.2 0.87 3E-05 36.8 -4.2 23 320-342 52-74 (102)
142 2eno_A Synaptojanin-2-binding 46.1 0.85 2.9E-05 38.2 -4.4 27 320-346 65-91 (120)
143 1t1h_A Gspef-atpub14, armadill 46.1 12 0.00042 28.2 2.7 46 139-185 7-55 (78)
144 2kv8_A RGS12, regulator of G-p 46.1 0.93 3.2E-05 35.2 -3.9 24 320-343 40-63 (83)
145 3l11_A E3 ubiquitin-protein li 46.0 9.9 0.00034 31.3 2.3 30 141-171 16-45 (115)
146 2kwj_A Zinc finger protein DPF 45.8 33 0.0011 28.6 5.5 84 127-244 22-108 (114)
147 2jik_A Synaptojanin-2 binding 45.6 0.93 3.2E-05 36.6 -4.1 24 320-343 55-78 (101)
148 2daz_A INAD-like protein; PDZ 44.7 1.2 4E-05 37.7 -3.8 23 320-342 69-91 (124)
149 3nfk_A Tyrosine-protein phosph 44.3 5 0.00017 32.5 0.1 23 321-343 63-85 (107)
150 3o46_A Maguk P55 subfamily mem 44.3 2.2 7.5E-05 33.8 -2.0 25 320-344 46-70 (93)
151 2vsp_A PDZ domain-containing p 44.1 1.1 3.8E-05 35.5 -3.9 27 320-346 44-70 (91)
152 2djt_A Unnamed protein product 44.0 1.2 4E-05 36.2 -3.8 22 321-342 57-78 (104)
153 3cbz_A Dishevelled-2; PDZ doma 44.0 2.3 7.8E-05 35.0 -2.0 29 319-347 50-78 (108)
154 1wfg_A Regulating synaptic mem 43.8 2.4 8.1E-05 36.3 -2.0 24 320-343 83-106 (131)
155 1i16_A Interleukin 16, LCF; cy 43.8 2.8 9.4E-05 35.7 -1.6 27 320-346 75-101 (130)
156 2yt7_A Amyloid beta A4 precurs 43.8 1.1 3.9E-05 36.3 -3.9 29 319-347 54-82 (101)
157 1um7_A Synapse-associated prot 43.7 1.2 4.1E-05 36.6 -3.8 22 321-342 58-79 (113)
158 1v5l_A PDZ and LIM domain 3; a 43.7 1.2 4.2E-05 36.2 -3.7 38 319-356 45-82 (103)
159 1kwa_A Hcask/LIN-2 protein; PD 43.7 2.3 7.7E-05 33.6 -2.0 27 319-345 42-68 (88)
160 2q9v_A Membrane-associated gua 43.6 2.3 7.8E-05 33.4 -2.0 22 321-342 46-67 (90)
161 1wfv_A Membrane associated gua 43.6 1 3.5E-05 36.3 -4.2 22 321-342 55-76 (103)
162 2i04_A Membrane-associated gua 43.2 1.1 3.9E-05 34.8 -3.8 23 321-343 44-66 (85)
163 2csj_A TJP2 protein; PDZ domai 43.1 1.1 3.8E-05 37.3 -4.1 38 319-356 61-98 (117)
164 3gsl_A Disks large homolog 4; 43.1 1.3 4.4E-05 39.7 -4.1 28 320-347 148-175 (196)
165 1ujv_A Membrane associated gua 43.0 2.3 7.7E-05 34.3 -2.2 28 318-345 45-72 (96)
166 1q7x_A PDZ2B domain of PTP-BAS 42.9 1.4 4.7E-05 36.1 -3.5 24 320-343 60-83 (108)
167 2q3g_A PDZ and LIM domain prot 42.9 1 3.5E-05 35.4 -4.2 23 320-342 44-66 (89)
168 2ecm_A Ring finger and CHY zin 42.9 13 0.00046 25.8 2.3 26 159-184 27-54 (55)
169 2ckl_A Polycomb group ring fin 42.7 10 0.00034 30.9 1.8 44 141-184 16-61 (108)
170 2o2t_A Multiple PDZ domain pro 42.6 1.2 4.1E-05 37.0 -4.0 21 320-340 67-88 (117)
171 3ebh_A PFA-M1, M1 family amino 42.5 24 0.00083 39.9 5.4 42 357-398 295-338 (889)
172 2he4_A Na(+)/H(+) exchange reg 42.4 1.2 4E-05 35.1 -3.9 25 320-344 45-69 (90)
173 1uep_A Membrane associated gua 42.2 2.5 8.6E-05 34.3 -2.0 24 320-343 52-75 (103)
174 4amh_A Disks large homolog 1; 42.2 1.3 4.4E-05 36.4 -3.8 22 320-341 50-71 (106)
175 1jm7_A BRCA1, breast cancer ty 41.8 13 0.00044 30.1 2.3 26 159-184 39-69 (112)
176 1n7t_A 99-MER peptide of densi 41.8 1.2 4.1E-05 36.1 -4.1 23 320-342 59-81 (103)
177 2ecw_A Tripartite motif-contai 41.6 10 0.00035 28.8 1.6 44 141-185 20-71 (85)
178 1n7e_A AMPA receptor interacti 41.5 1.2 4.3E-05 35.6 -4.0 22 321-342 49-70 (97)
179 2ckl_B Ubiquitin ligase protei 41.4 9.2 0.00031 33.7 1.4 44 141-184 55-101 (165)
180 4fke_A Aminopeptidase N; zinc 41.4 38 0.0013 38.2 6.9 42 357-398 316-359 (909)
181 2koj_A Partitioning defective 41.2 1.2 4.3E-05 36.5 -4.1 23 321-343 58-80 (111)
182 1chc_A Equine herpes virus-1 r 41.1 17 0.00058 26.6 2.7 44 142-185 7-52 (68)
183 2dlu_A INAD-like protein; PDZ 41.0 1.2 4.1E-05 36.6 -4.2 24 320-343 56-79 (111)
184 3u9w_A Leukotriene A-4 hydrola 40.7 6.8 0.00023 42.2 0.6 39 359-397 289-329 (608)
185 2qg1_A Multiple PDZ domain pro 40.4 1.3 4.3E-05 35.1 -4.0 23 320-342 47-69 (92)
186 2d92_A INAD-like protein; PDZ 40.4 3 0.0001 34.1 -1.8 26 320-345 62-87 (108)
187 1uew_A Membrane associated gua 40.4 1.5 5E-05 36.4 -3.8 28 319-346 60-87 (114)
188 2dm8_A INAD-like protein; PDZ 40.2 1.4 4.8E-05 36.4 -3.9 24 320-343 61-84 (116)
189 1ihj_A INAD; intermolecular di 40.1 1.3 4.5E-05 35.4 -4.1 22 321-342 56-77 (98)
190 3kzd_A TIAM-1, T-lymphoma inva 40.1 2.8 9.6E-05 34.2 -2.0 27 319-345 51-77 (94)
191 2yuy_A RHO GTPase activating p 40.1 1.6 5.4E-05 37.0 -3.7 27 320-346 78-104 (126)
192 1um1_A KIAA1849 protein, RSGI 39.9 1.5 5.2E-05 35.9 -3.8 20 320-339 54-73 (110)
193 3nw0_A Non-structural maintena 39.7 11 0.00037 35.9 1.7 51 109-186 176-230 (238)
194 2c2l_A CHIP, carboxy terminus 39.7 14 0.00049 34.7 2.6 47 138-185 206-255 (281)
195 2xdt_A Endoplasmic reticulum a 39.7 46 0.0016 37.5 7.2 42 357-398 302-345 (897)
196 2ct0_A Non-SMC element 1 homol 39.3 14 0.00049 28.7 2.1 16 109-124 11-26 (74)
197 1mfg_A ERB-B2 interacting prot 39.1 1.3 4.4E-05 35.3 -4.2 23 320-342 51-73 (95)
198 1rgw_A ZAsp protein; PDZ, cyph 38.8 1.5 5.1E-05 34.0 -3.8 24 319-342 41-64 (85)
199 3l4f_D SH3 and multiple ankyri 38.5 1.7 5.7E-05 37.4 -3.8 26 320-345 82-107 (132)
200 2egp_A Tripartite motif-contai 38.3 13 0.00043 28.1 1.7 27 159-185 30-65 (79)
201 3se6_A Endoplasmic reticulum a 38.3 50 0.0017 37.6 7.2 43 356-398 363-407 (967)
202 2kpk_A Membrane-associated gua 38.3 1.5 5.1E-05 37.3 -4.2 27 320-346 61-87 (129)
203 2ecn_A Ring finger protein 141 37.9 9.9 0.00034 28.2 0.9 44 141-186 16-61 (70)
204 2lva_A Ubiquitin carboxyl-term 44.1 6.8 0.00023 33.6 0.0 23 39-61 90-112 (129)
205 2uzc_A Human pdlim5, PDZ and L 37.6 1.5 5E-05 34.4 -4.1 23 320-342 44-66 (88)
206 3cqb_A Probable protease HTPX 37.6 7 0.00024 32.3 0.0 25 346-370 68-96 (107)
207 2d8v_A Zinc finger FYVE domain 37.6 17 0.00057 27.9 2.1 33 111-171 6-38 (67)
208 2opg_A Multiple PDZ domain pro 37.5 1.6 5.3E-05 35.0 -4.0 19 321-339 49-67 (98)
209 1wi2_A Riken cDNA 2700099C19; 37.5 1.5 5.2E-05 35.6 -4.1 24 320-343 58-81 (104)
210 2d8t_A Dactylidin, ring finger 37.5 17 0.00057 27.1 2.2 27 159-185 33-61 (71)
211 2r4h_A Membrane-associated gua 37.3 1.6 5.6E-05 36.1 -4.0 22 321-342 68-89 (112)
212 3i4w_A Disks large homolog 4; 37.2 1.3 4.5E-05 35.8 -4.5 22 321-342 54-75 (104)
213 3suz_A Amyloid beta A4 precurs 37.1 7.1 0.00024 39.7 0.0 38 319-356 331-368 (388)
214 2ego_A General receptor for ph 37.0 1.6 5.4E-05 35.0 -4.0 26 320-345 54-79 (96)
215 2la8_A Inactivation-NO-after-p 37.0 8.1 0.00028 31.6 0.3 23 320-342 43-65 (106)
216 2v90_A PDZ domain-containing p 36.9 1.3 4.6E-05 35.3 -4.5 24 320-343 47-70 (96)
217 2edv_A FERM and PDZ domain-con 36.9 1.7 5.9E-05 34.9 -3.8 22 319-340 46-67 (96)
218 1qav_A Alpha-1 syntrophin (res 36.8 1.3 4.4E-05 34.9 -4.5 23 320-342 48-70 (90)
219 3lrq_A E3 ubiquitin-protein li 36.7 12 0.00042 30.1 1.4 45 141-185 23-70 (100)
220 1wg6_A Hypothetical protein (r 36.6 3.8 0.00013 34.8 -1.9 25 320-344 73-97 (127)
221 1jjd_A Metallothionein, SMTA; 36.4 11 0.00037 27.9 0.9 29 142-170 9-38 (55)
222 1ueq_A Membrane associated gua 36.3 1.8 6E-05 36.5 -4.0 27 320-346 62-88 (123)
223 1vb7_A PDZ and LIM domain 2; P 36.2 1.7 5.7E-05 34.6 -4.0 23 320-342 47-69 (94)
224 2csy_A Zinc finger protein 183 35.8 13 0.00045 28.4 1.4 43 141-184 16-60 (81)
225 2iwq_A Multiple PDZ domain pro 35.8 2 6.7E-05 36.4 -3.8 25 321-345 78-102 (123)
226 3qe1_A Sorting nexin-27, G pro 35.7 1.7 5.9E-05 35.3 -4.0 27 320-346 60-86 (107)
227 3r68_A Na(+)/H(+) exchange reg 35.6 3 0.0001 32.9 -2.5 25 320-344 46-70 (95)
228 2jre_A C60-1 PDZ domain peptid 35.2 1.4 4.7E-05 36.0 -4.7 22 321-342 63-84 (108)
229 2kre_A Ubiquitin conjugation f 34.9 20 0.00067 29.2 2.4 47 138-185 27-75 (100)
230 1nf3_C PAR-6B; semi-CRIB motif 34.8 2 6.7E-05 36.5 -4.0 26 321-346 84-109 (128)
231 2ct2_A Tripartite motif protei 34.6 16 0.00054 28.1 1.7 28 158-185 36-68 (88)
232 2dc2_A GOPC, golgi associated 34.6 1.2 4.1E-05 36.4 -5.2 28 320-347 53-80 (103)
233 3r0h_A INAD, inactivation-NO-a 34.5 1.9 6.4E-05 39.2 -4.5 28 320-347 154-181 (206)
234 1x6d_A Interleukin-16; PDZ dom 34.3 10 0.00034 31.3 0.5 23 320-342 60-82 (119)
235 4ayc_A E3 ubiquitin-protein li 34.3 19 0.00066 30.7 2.4 27 159-185 71-99 (138)
236 1q3o_A Shank1; PDZ, GKAP, pept 34.0 1.9 6.6E-05 35.3 -4.0 25 320-344 62-86 (109)
237 1wgm_A Ubiquitin conjugation f 34.0 20 0.00069 29.0 2.3 47 138-185 20-69 (98)
238 2fcf_A Multiple PDZ domain pro 33.9 4.1 0.00014 32.7 -2.0 24 321-344 58-81 (103)
239 3ztg_A E3 ubiquitin-protein li 33.9 11 0.00038 29.5 0.6 42 141-183 14-60 (92)
240 1uhp_A Hypothetical protein KI 33.8 2 6.9E-05 35.0 -3.9 23 320-342 59-81 (107)
241 2qkv_A Inactivation-NO-after-p 33.7 8 0.00027 30.8 -0.2 23 320-342 49-71 (96)
242 2eeg_A PDZ and LIM domain prot 33.7 1.9 6.6E-05 34.3 -4.0 20 320-339 49-68 (94)
243 1wif_A RSGI RUH-020, riken cDN 33.6 3 0.0001 35.8 -3.0 28 320-347 67-94 (126)
244 3fl2_A E3 ubiquitin-protein li 33.4 15 0.0005 30.7 1.4 28 158-185 69-99 (124)
245 2w15_A Zinc metalloproteinase 33.2 16 0.00053 33.4 1.6 26 344-369 123-148 (202)
246 3jvi_A Protein tyrosine phosph 33.1 36 0.0012 30.1 4.0 32 441-473 126-159 (161)
247 2iwn_A Multiple PDZ domain pro 32.9 1.9 6.5E-05 34.1 -4.2 20 320-339 51-70 (97)
248 4dd8_A Disintegrin and metallo 32.9 15 0.00053 33.7 1.6 25 345-369 121-145 (208)
249 2cs5_A Tyrosine-protein phosph 32.8 4.5 0.00015 33.5 -2.0 26 320-345 60-85 (119)
250 2gvi_A Conserved hypothetical 32.7 7.9 0.00027 35.9 -0.5 13 158-170 190-202 (204)
251 2d8i_A T-cell lymphoma invasio 32.7 5 0.00017 33.6 -1.7 24 319-342 60-83 (114)
252 2pa1_A PDZ and LIM domain prot 32.5 4.2 0.00014 31.6 -2.1 25 319-343 42-66 (87)
253 2yub_A LIMK-2, LIM domain kina 31.8 2.7 9.3E-05 35.4 -3.5 25 320-344 63-87 (118)
254 2eei_A PDZ domain-containing p 31.6 1.8 6E-05 35.2 -4.6 24 320-343 49-72 (106)
255 1atl_A Atrolysin C; metalloend 31.6 18 0.00062 33.0 1.8 26 344-369 123-148 (202)
256 1g9o_A NHE-RF; PDZ domain, com 31.6 10 0.00034 29.5 0.0 23 320-342 44-66 (91)
257 2kr4_A Ubiquitin conjugation f 31.4 21 0.00072 28.0 1.9 47 138-185 12-60 (85)
258 3ngh_A PDZ domain-containing p 31.2 2.3 7.8E-05 34.5 -4.0 26 320-345 43-68 (106)
259 1v5q_A GRIP1 homolog, glutamat 31.2 2.2 7.4E-05 35.9 -4.3 23 321-343 64-86 (122)
260 1weo_A Cellulose synthase, cat 31.2 41 0.0014 27.3 3.5 15 171-185 14-28 (93)
261 2jxo_A Ezrin-radixin-moesin-bi 30.9 4.7 0.00016 32.1 -2.1 24 320-343 50-73 (98)
262 2iwo_A Multiple PDZ domain pro 30.9 11 0.00037 31.5 0.1 23 320-342 71-93 (120)
263 2ect_A Ring finger protein 126 30.8 35 0.0012 25.6 3.1 25 161-185 38-64 (78)
264 2edp_A Fragment, shroom family 30.7 2.6 8.9E-05 34.0 -3.7 19 320-338 53-71 (100)
265 2dmz_A INAD-like protein; PDZ 30.6 2.6 9E-05 35.6 -3.9 24 320-343 64-87 (129)
266 2e7k_A Maguk P55 subfamily mem 30.5 2.6 9E-05 33.5 -3.7 27 320-347 47-73 (91)
267 2z17_A Pleckstrin homology SEC 30.4 5.4 0.00019 32.2 -1.8 26 320-345 65-90 (104)
268 4ic3_A E3 ubiquitin-protein li 30.4 29 0.001 26.2 2.6 25 159-185 42-67 (74)
269 1e4u_A Transcriptional repress 30.2 24 0.00081 27.4 2.0 28 159-186 33-63 (78)
270 1wf7_A Enigma homologue protei 30.1 2.5 8.5E-05 34.2 -4.0 20 320-339 46-65 (103)
271 3khf_A Microtubule-associated 30.1 2.4 8.4E-05 33.9 -4.0 24 320-343 51-74 (99)
272 2gi4_A Possible phosphotyrosin 30.1 11 0.00038 33.3 0.0 31 441-472 123-153 (156)
273 2edz_A PDZ domain-containing p 30.0 2.3 7.8E-05 35.2 -4.3 23 320-342 55-77 (114)
274 2kom_A Partitioning defective 30.0 5.2 0.00018 33.5 -2.0 23 321-343 77-99 (121)
275 2f5y_A Regulator of G-protein 30.0 4.9 0.00017 31.6 -2.1 20 320-339 41-60 (91)
276 2fne_A Multiple PDZ domain pro 29.9 5.3 0.00018 33.3 -2.0 23 320-342 71-93 (117)
277 2gtq_A Aminopeptidase N; alani 29.9 13 0.00044 41.9 0.6 41 358-398 288-330 (867)
278 2pkt_A PDZ and LIM domain prot 29.8 24 0.0008 27.4 2.0 20 320-339 44-63 (91)
279 1bud_A Protein (acutolysin A); 29.6 21 0.00072 32.4 1.9 26 344-369 120-145 (197)
280 3tsv_A Tight junction protein 29.6 2.3 7.9E-05 36.0 -4.4 27 319-345 67-93 (124)
281 2fe5_A Presynaptic protein SAP 29.5 12 0.00042 29.2 0.2 21 321-341 52-72 (94)
282 1qua_A Acutolysin-C, hemorrhag 29.3 21 0.00072 32.3 1.8 26 344-369 122-147 (197)
283 1yp1_A FII; FII hydrolase; 1.9 28.9 21 0.00072 32.5 1.7 26 344-369 122-147 (202)
284 1z6u_A NP95-like ring finger p 28.9 19 0.00063 31.5 1.3 44 141-185 79-125 (150)
285 1z87_A Alpha-1-syntrophin; pro 28.7 3.5 0.00012 40.0 -3.8 38 319-356 120-157 (263)
286 1kuf_A Atrolysin E, metallopro 28.7 22 0.00075 32.5 1.8 26 344-369 125-150 (203)
287 1va8_A Maguk P55 subfamily mem 28.4 5.6 0.00019 32.8 -2.1 21 322-342 68-88 (113)
288 2rcz_A Tight junction protein 28.4 5.5 0.00019 30.1 -2.0 19 321-339 40-58 (81)
289 1g25_A CDK-activating kinase a 28.3 15 0.00052 26.7 0.5 46 141-186 4-56 (65)
290 2ect_A Ring finger protein 126 28.2 33 0.0011 25.7 2.5 44 213-256 16-59 (78)
291 1whd_A RGS3, regulator of G-pr 27.6 5.7 0.00019 31.9 -2.2 19 320-338 53-71 (100)
292 3k1r_A Harmonin; protein-prote 27.5 2.9 0.0001 38.0 -4.4 27 320-346 127-153 (192)
293 3bpu_A Membrane-associated gua 27.0 13 0.00046 28.6 0.0 23 320-342 42-64 (88)
294 2f42_A STIP1 homology and U-bo 26.9 24 0.00083 32.1 1.7 47 138-185 104-153 (179)
295 2dw0_A Catrocollastatin; apopt 26.6 22 0.00076 36.5 1.6 26 344-369 124-149 (419)
296 3knv_A TNF receptor-associated 26.5 12 0.00042 32.4 -0.3 43 141-184 32-77 (141)
297 1uit_A Human discs large 5 pro 26.4 3.6 0.00012 34.1 -3.7 20 320-339 59-78 (117)
298 2ero_A VAP-1, vascular apoptos 26.2 21 0.00073 36.7 1.4 26 344-369 133-158 (427)
299 1chc_A Equine herpes virus-1 r 25.9 52 0.0018 23.8 3.2 40 113-152 5-52 (68)
300 3hpk_A Protein interacting wit 25.9 15 0.00052 30.6 0.1 20 320-339 63-82 (125)
301 2e3x_A Coagulation factor X-ac 25.6 23 0.00078 36.5 1.5 26 344-369 126-151 (427)
302 1rmd_A RAG1; V(D)J recombinati 25.2 22 0.00075 29.1 1.0 44 141-185 24-70 (116)
303 2ecg_A Baculoviral IAP repeat- 25.2 34 0.0012 25.8 2.1 25 159-185 43-68 (75)
304 1vae_A Rhophilin 2, rhophilin, 25.2 7 0.00024 32.4 -2.1 24 320-343 53-76 (111)
305 2dmi_A Teashirt homolog 3; zin 25.1 28 0.00097 27.6 1.7 11 212-222 80-90 (115)
306 3hct_A TNF receptor-associated 25.1 23 0.00078 29.3 1.1 44 141-185 19-65 (118)
307 3c37_A Peptidase, M48 family; 24.6 17 0.00058 34.5 0.3 27 345-371 83-114 (253)
308 1iym_A EL5; ring-H2 finger, ub 24.4 69 0.0023 22.0 3.5 43 213-255 6-49 (55)
309 3hcs_A TNF receptor-associated 24.2 24 0.00081 31.1 1.1 45 141-186 19-66 (170)
310 1x5q_A LAP4 protein; PDZ domai 24.1 3.8 0.00013 33.5 -4.0 20 320-339 63-82 (110)
311 2qt5_A Glutamate receptor-inte 24.0 4 0.00014 36.9 -4.2 26 320-345 153-178 (200)
312 2ea6_A Ring finger protein 4; 24.0 15 0.00051 26.8 -0.2 26 159-184 40-67 (69)
313 3oue_A Cytochrome C family pro 24.0 13 0.00044 33.2 -0.7 86 162-256 56-156 (158)
314 2ko5_A Ring finger protein Z; 23.9 33 0.0011 28.1 1.7 31 155-185 35-73 (99)
315 1p1d_A PDZ45, glutamate recept 23.7 4.5 0.00015 36.6 -3.9 27 320-346 153-179 (196)
316 2gzv_A PRKCA-binding protein; 23.6 8.1 0.00028 32.0 -2.0 23 321-343 69-91 (114)
317 3b34_A Aminopeptidase N; prote 23.3 20 0.00069 40.5 0.6 42 357-398 312-355 (891)
318 2d90_A PDZ domain containing p 23.2 19 0.00064 28.7 0.2 23 320-342 47-69 (102)
319 2vsv_A Rhophilin-2; scaffold p 23.1 8 0.00027 32.1 -2.1 24 319-342 60-83 (109)
320 2xeu_A Ring finger protein 4; 23.1 16 0.00054 26.2 -0.3 46 141-186 4-57 (64)
321 2eeh_A PDZ domain-containing p 22.9 18 0.00061 28.8 -0.0 20 320-339 53-72 (100)
322 3b8z_A Protein adamts-5; alpha 22.7 27 0.00092 32.1 1.2 23 344-369 131-153 (217)
323 1p8a_A Protein tyrosine phosph 22.7 46 0.0016 28.7 2.7 28 441-469 116-144 (146)
324 2kl1_A YLBL protein; structure 22.7 41 0.0014 26.5 2.2 18 320-337 21-38 (94)
325 2ysj_A Tripartite motif-contai 22.4 24 0.00083 25.4 0.7 30 141-171 21-50 (63)
326 2gvi_A Conserved hypothetical 22.1 18 0.00063 33.4 -0.1 30 213-244 173-202 (204)
327 3sfj_A TAX1-binding protein 3; 21.8 19 0.00067 28.6 0.0 24 320-343 62-85 (104)
328 2cs3_A Protein C14ORF4, MY039 21.6 33 0.0011 27.3 1.3 34 111-144 13-46 (93)
329 3cyy_A Tight junction protein 21.5 27 0.00093 26.9 0.8 17 321-337 42-58 (92)
330 2v4b_A Adamts-1; zymogen, prot 21.1 31 0.0011 33.4 1.4 23 344-369 133-155 (300)
331 2jny_A Uncharacterized BCR; st 21.0 22 0.00075 27.2 0.2 41 213-281 11-51 (67)
332 2xkx_A Disks large homolog 4; 21.0 7.9 0.00027 42.6 -3.3 25 319-343 348-372 (721)
333 2dls_A PDZ-rhogef, RHO guanine 20.6 21 0.00072 28.0 -0.0 20 320-339 46-65 (93)
334 1x5n_A Harmonin; PDZ domain, u 20.6 26 0.00088 28.5 0.5 21 320-340 58-78 (114)
335 2i6v_A General secretion pathw 20.5 29 0.00098 26.9 0.8 20 319-338 35-54 (87)
336 2dmj_A Poly (ADP-ribose) polym 20.4 32 0.0011 28.5 1.1 20 168-187 20-39 (106)
337 2yu4_A E3 SUMO-protein ligase 20.3 35 0.0012 27.1 1.3 32 139-170 6-37 (94)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=188.84 Aligned_cols=120 Identities=20% Similarity=0.468 Sum_probs=106.8
Q ss_pred CcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCcceE
Q 011854 113 YRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIE 192 (476)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~ 192 (476)
.++|++|+++|..++++.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|+++|.+|+++|.+.. ..|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~ 81 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRVT 81 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEEE
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEEE
Confidence 578999999998788999999999999999999999999989999999999999999999999999999999643 4577
Q ss_pred EcccCccccccCCCCcc--CCCCccCCCCcccCCCCceEEecCCcccchhhHhhh
Q 011854 193 YRAHPFWVQKYCPSHEH--DGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (476)
Q Consensus 193 ~~~hpfw~qkyC~~h~H--~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~ 245 (476)
+.++. || +.||+|..|++++. ++.|+ +.+|++||..++.++
T Consensus 82 a~~~~----------~H~~~~CF~C~~C~~~l~-~~~f~-~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 82 YNNFS----------WHASTECFLCSCCSKCLI-GQKFM-PVEGMVFCSVECKKR 124 (126)
T ss_dssp ETTEE----------EESSTTTSBCTTTCCBCT-TSEEE-EETTEEESSHHHHHS
T ss_pred CCCCE----------eeCCCCCcCcCCCCCccC-CCeeE-eECCEEcchHHhhhh
Confidence 77654 58 99999999999885 77887 569999999777653
No 2
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.90 E-value=5.9e-24 Score=198.58 Aligned_cols=124 Identities=25% Similarity=0.560 Sum_probs=108.0
Q ss_pred CCCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCc
Q 011854 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (476)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g 189 (476)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4567899999999986667899999999999999999999998776 6899999999999999999999999998743 2
Q ss_pred ceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhh
Q 011854 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (476)
Q Consensus 190 ~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~ 245 (476)
++.+.++ +||+.||+|..|.+.|..++.|+...+|++||..||.++
T Consensus 135 v~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTE----------ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCC----------CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 3444443 469999999999999977888877789999999999875
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.89 E-value=3.2e-24 Score=189.51 Aligned_cols=122 Identities=19% Similarity=0.450 Sum_probs=106.8
Q ss_pred CcccccCCcccccCceEeecCccccCCCcccCCCCCCCC--CceeeccCCcccccccccccccc--cccccCCcccCCCC
Q 011854 113 YRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSNHG 188 (476)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~--~~~f~~~dg~~YCk~cY~~~f~~--~C~~C~~~I~~~~~ 188 (476)
.++|++|+++|....++.++++.||+.||+|..|+.+|. +..|+.++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 478999999997666799999999999999999999996 36789999999999999999999 9999999998743
Q ss_pred cceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 189 GLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 189 g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
..+.+.++. ||+.||+|..|.+.|..+++|+. .++++||..||.+++
T Consensus 81 ~~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 81 MTMRVKDKV----------YHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEWT 127 (131)
T ss_dssp EEEEETTEE----------EEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHHH
T ss_pred eeEeeCCce----------ECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHHh
Confidence 356666654 59999999999999877888884 589999999998764
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.89 E-value=5.1e-24 Score=196.76 Aligned_cols=125 Identities=25% Similarity=0.547 Sum_probs=107.1
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCcc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGL 190 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~ 190 (476)
.+.++|.+|+++|....++.++++.||+.||+|..|+.+|.+..| .+||++||+.||.++|+++|.+|+++|.+.. .+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v 81 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VV 81 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EE
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EE
Confidence 356899999999986667899999999999999999999998765 6899999999999999999999999998743 23
Q ss_pred eEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 191 IEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 191 i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
+.+.++ .||..||+|..|++.|..|+.|+...+|++||..||.++++
T Consensus 82 ~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 82 RRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp EEETTE----------EEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred EEcCCc----------eEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 344443 36999999999999997788887678999999999998765
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.87 E-value=1.5e-23 Score=196.92 Aligned_cols=125 Identities=20% Similarity=0.486 Sum_probs=108.3
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCC--ceeeccCCcccccccccccccc--cccccCCcccCC
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSN 186 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YCk~cY~~~f~~--~C~~C~~~I~~~ 186 (476)
...++|++|+++|....++.++++.||++||+|..|+.+|.. ..|+.++|++||+.||.++|++ +|..|+++|.+.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 346799999999986667999999999999999999999985 6789999999999999999999 799999999864
Q ss_pred CCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 187 HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 187 ~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
+ .++.+.++. ||+.||+|..|.+.|..++.|+ ..++++||..||.++++
T Consensus 83 e-~~i~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 83 E-LVMRAQGNV----------YHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTALI 131 (188)
T ss_dssp S-EEEEETTEE----------ECGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGCCTTTC
T ss_pred c-EEEEcCCCE----------EeCCCCeECCCCCCCCCCCeEE-EECCeEECHHHHHHHhc
Confidence 3 356666544 5999999999999987788887 56899999999998654
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.85 E-value=4.7e-22 Score=187.22 Aligned_cols=130 Identities=22% Similarity=0.482 Sum_probs=110.8
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccc---------------
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPK--------------- 175 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~--------------- 175 (476)
.+.++|.+|+++|..++.|.++++.||+.||+|..|+.+|.+..|+.++|++||+.||.++|+++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 45689999999998888999999999999999999999999988999999999999999999887
Q ss_pred ---------------------------------ccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCccc
Q 011854 176 ---------------------------------CDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERME 222 (476)
Q Consensus 176 ---------------------------------C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~ 222 (476)
|..|+++|.+.. .|.+.++ +||..||+|..|.+.|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGK----------SWHKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTE----------EECTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCC----------ccchhcCCccccCCCC
Confidence 667888887532 4555543 4699999999999988
Q ss_pred CCCCceEEecCCcccchhhHhhhccCCCCCCcch
Q 011854 223 PQDTAYVALDDGRKLCLECLDSAIMDTNECQPLY 256 (476)
Q Consensus 223 ~~g~~y~~l~dg~~~C~~C~~~~v~d~~~Cqp~~ 256 (476)
.. ..|+ ..++++||..||.+++ .+.|..|.
T Consensus 153 ~~-~~~~-~~~g~~yC~~cy~~~f--~~kc~~C~ 182 (192)
T 1b8t_A 153 ES-TTLA-DKDGEIYCKGCYAKNF--GPKGFGFG 182 (192)
T ss_dssp CS-SSEE-EETTEEEEHHHHHHHT--CCCCCCCC
T ss_pred CC-Cccc-ccCCEEeCHHHHHHhc--CCcCCCCC
Confidence 44 4676 6799999999999854 67887775
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.82 E-value=8e-21 Score=160.24 Aligned_cols=98 Identities=26% Similarity=0.555 Sum_probs=87.1
Q ss_pred CCCcccccCCccccc-CceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCc
Q 011854 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g 189 (476)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|..|+++|...+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 456899999999974 78999999999999999999999999888999999999999999999999999999998532 3
Q ss_pred ceEEcccCccccccCCCCccCCCCccCCCC
Q 011854 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCE 219 (476)
Q Consensus 190 ~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~ 219 (476)
.|.+.++. ||++||+|..|+
T Consensus 82 ~~~a~~~~----------~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGTV----------WHKDCFSGPSSG 101 (101)
T ss_dssp EEESSSCE----------EETTTCCCTTCC
T ss_pred EEEeCCcc----------hHHhCCCCCCCC
Confidence 56666544 599999999995
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.8e-19 Score=156.51 Aligned_cols=109 Identities=16% Similarity=0.287 Sum_probs=91.6
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCC--CceeeccCCcccccccccccccc--cccccCCcccCC
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSN 186 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~--~~~f~~~dg~~YCk~cY~~~f~~--~C~~C~~~I~~~ 186 (476)
...++|++|+++|....++.++++.||+.||+|..|+.+|. +..|+.++|++||+.||.++|++ +|.+|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 45689999999998666799999999999999999999997 36789999999999999999999 999999999973
Q ss_pred CCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 187 HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 187 ~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
. +++.+ +.+..|++|+ +.++++||..|+.+..+
T Consensus 83 ~---~~~~g------------------------~~~l~g~~f~-~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 83 D---VMVVG------------------------EPTLMGGEFG-DEDERLITRLENTQFDA 115 (122)
T ss_dssp E---SSSSS------------------------SSSCCSCTTC-CTTCCCCEECTTTTTTC
T ss_pred h---eEEcC------------------------CcCCCCCccE-ecCCEeEccCcchhchh
Confidence 2 32222 2234688887 67999999999987543
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.5e-17 Score=143.91 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=86.4
Q ss_pred CCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCC--ceeeccCCcccccccccccccccccccCCcccCCCCc
Q 011854 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (476)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g 189 (476)
+.++|++|+++|....++.++++.||+.||+|..|+.+|.+ ..|+.++|++||+.||.++|+++|..|.. +.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~--- 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD--- 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---
Confidence 35789999999986668999999999999999999999975 57999999999999999999999998872 11
Q ss_pred ceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 190 ~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
+| . |.+.+..|++|+ +.++++||..|+.+..
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~-~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFG-DEDERLITRLENTQFD 106 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCC-CSSSCCCEEEECTTCC
T ss_pred ee----------------------E---cCCccCCCCeeE-EcCCEeecchhhhccc
Confidence 11 1 345556788987 7799999999998753
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5.9e-16 Score=123.89 Aligned_cols=71 Identities=24% Similarity=0.526 Sum_probs=66.3
Q ss_pred cccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccc-ccccccccccccccCCccc
Q 011854 114 RICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHK-SCYREHYHPKCDVCKHFIP 184 (476)
Q Consensus 114 ~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk-~cY~~~f~~~C~~C~~~I~ 184 (476)
|+|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+..+|++||+ .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5799999999878999999999999999999999999988899999999999 6999999999999997654
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.59 E-value=3.1e-16 Score=127.09 Aligned_cols=74 Identities=24% Similarity=0.503 Sum_probs=58.1
Q ss_pred CCCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcc
Q 011854 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (476)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I 183 (476)
+.+.+.|.+|+++|..++.+.++++.||++||+|..|+++|....|+..++++||+.||.++|+++|.+|++..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 45678999999999888899999999999999999999999988899999999999999999999999999764
No 12
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.4e-15 Score=120.32 Aligned_cols=70 Identities=17% Similarity=0.458 Sum_probs=64.9
Q ss_pred CCCCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccc-ccccccccccccc
Q 011854 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHK-SCYREHYHPKCDV 178 (476)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk-~cY~~~f~~~C~~ 178 (476)
++...++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+..++++||+ .||.++|+++|.+
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 456678999999999878999999999999999999999999988899999999999 7999999999974
No 13
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.8e-15 Score=121.71 Aligned_cols=67 Identities=36% Similarity=0.756 Sum_probs=62.4
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
.+.++|.+|+++|..+++|.++++.||++||+|..|+.+|.+ .|+.+++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 467899999999988899999999999999999999999986 5888999999999999999999974
No 14
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.8e-15 Score=119.28 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=64.1
Q ss_pred CCcccccCCccccc---CceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccC
Q 011854 112 GYRICAGCNNEIGH---GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCK 180 (476)
Q Consensus 112 ~~~~C~~C~~~I~~---g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~ 180 (476)
..++|++|+++|.. .++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 45789999999973 4889999999999999999999999998899999999999999999999999886
No 15
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=8.1e-15 Score=121.22 Aligned_cols=68 Identities=31% Similarity=0.663 Sum_probs=63.2
Q ss_pred CCCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
....++|.+|+++| .+++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..
T Consensus 22 ~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 35678999999999 489999999999999999999999999888999999999999999999999963
No 16
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=5.9e-15 Score=115.78 Aligned_cols=67 Identities=25% Similarity=0.621 Sum_probs=62.3
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
.+.+.|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 45689999999996 67899999999999999999999999888999999999999999999999974
No 17
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.4e-14 Score=120.07 Aligned_cols=74 Identities=18% Similarity=0.375 Sum_probs=66.9
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIP 184 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~ 184 (476)
.+...|.+|++.|..++.|.++++.||+.||+|..|+.+|....|+..++++||+.||.++|+++|..+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~ 86 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGS 86 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCC
Confidence 45789999999998778899999999999999999999999888999999999999999999999996655443
No 18
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=9.8e-15 Score=114.73 Aligned_cols=67 Identities=24% Similarity=0.606 Sum_probs=62.0
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
.+.++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 35678999999996 67899999999999999999999999888999999999999999999999964
No 19
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.5e-14 Score=114.35 Aligned_cols=66 Identities=26% Similarity=0.633 Sum_probs=60.9
Q ss_pred CCCcccccCCccccc---CceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGH---GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKC 176 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~---g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C 176 (476)
.+.+.|.+|+++|.. ..+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 457899999999974 378999999999999999999999999899999999999999999999986
No 20
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.2e-14 Score=114.78 Aligned_cols=67 Identities=27% Similarity=0.660 Sum_probs=62.2
Q ss_pred CCcccccCCcccccC-ceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 112 GYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 112 ~~~~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
..++|.+|+++|..+ .++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 457899999999874 8899999999999999999999999888999999999999999999999963
No 21
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.6e-14 Score=114.03 Aligned_cols=67 Identities=30% Similarity=0.677 Sum_probs=62.1
Q ss_pred CCcccccCCcccccC-ceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 112 GYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 112 ~~~~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
..++|.+|+++|..+ .++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 457899999999875 6899999999999999999999999888999999999999999999999963
No 22
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.47 E-value=1.3e-14 Score=112.86 Aligned_cols=63 Identities=27% Similarity=0.654 Sum_probs=59.2
Q ss_pred CCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccc
Q 011854 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPK 175 (476)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~ 175 (476)
..++|++|+++|. ++++.++++.||++||+|..|+.+|.+..|+..+|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4678999999997 88999999999999999999999999888999999999999999999875
No 23
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=115.56 Aligned_cols=68 Identities=25% Similarity=0.533 Sum_probs=62.6
Q ss_pred CCCcccccCCcccc-cCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIG-HGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~-~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
...++|++|+++|. .+.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 13 TFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred ccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 45679999999997 367889999999999999999999999988999999999999999999999974
No 24
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.9e-14 Score=115.12 Aligned_cols=67 Identities=21% Similarity=0.476 Sum_probs=60.2
Q ss_pred CCCcccccCCccccc-CceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~ 177 (476)
...+.|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 456899999999985 5668899999999999999999999988899999999999999999999996
No 25
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=5.9e-14 Score=114.23 Aligned_cols=68 Identities=18% Similarity=0.315 Sum_probs=60.8
Q ss_pred CCCCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceee--ccCCcccccccccccccccc
Q 011854 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFS--TSENRPYHKSCYREHYHPKC 176 (476)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~--~~dg~~YCk~cY~~~f~~~C 176 (476)
...+.+.|.+|++.|+.++.|.++++.||+.||+|..|+++|....|+ ..|+++||+.||.++|..-+
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 345678999999999888899999999999999999999999988887 47999999999999887654
No 26
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=4.3e-14 Score=114.35 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=61.7
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeecc-CCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTS-ENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~-dg~~YCk~cY~~~f~~~C~~ 178 (476)
...++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+.. +|++||+.||.++|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 56789999999996 789999999999999999999999998888875 78999999999999999974
No 27
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=7.6e-14 Score=115.10 Aligned_cols=66 Identities=23% Similarity=0.528 Sum_probs=61.4
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~ 177 (476)
...++|.+|++.|. ++++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45689999999996 6889999999999999999999999988889999999999999999999985
No 28
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=2.9e-14 Score=115.01 Aligned_cols=66 Identities=24% Similarity=0.505 Sum_probs=61.3
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~ 177 (476)
...++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 46789999999996 6799999999999999999999999988899999999999999999999875
No 29
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=4.2e-14 Score=111.20 Aligned_cols=66 Identities=29% Similarity=0.672 Sum_probs=60.7
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~ 177 (476)
.+.++|.+|+++|. +++|.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 46789999999996 7899999999999999999999999998899899999999999999887753
No 30
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=4.9e-14 Score=113.56 Aligned_cols=67 Identities=27% Similarity=0.640 Sum_probs=62.0
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
...+.|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 13 MFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred hcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 34689999999996 58899999999999999999999999888999999999999999999999974
No 31
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=8.5e-14 Score=112.16 Aligned_cols=67 Identities=24% Similarity=0.625 Sum_probs=61.9
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
...++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 13 KFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred ccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 45689999999996 57899999999999999999999999888999999999999999999999963
No 32
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=8.2e-14 Score=109.99 Aligned_cols=68 Identities=25% Similarity=0.583 Sum_probs=60.1
Q ss_pred CCCcccccCCcccccC-ceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVC 179 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C 179 (476)
.+.++|.+|+++|... .++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++| .+|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 4568999999999764 6899999999999999999999999888999999999999999887 456544
No 33
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1e-13 Score=112.01 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=59.4
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~ 177 (476)
.+.++|++|+++|. +++|.++++.||+.||+|..|+.+|.+..| ..+|++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 45789999999997 888999999999999999999999998755 889999999999999998764
No 34
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.38 E-value=1.4e-13 Score=129.19 Aligned_cols=75 Identities=20% Similarity=0.461 Sum_probs=69.3
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccC
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPS 185 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~ 185 (476)
.+.++|.+|+++|..++.|.++++.||++||+|..|+.+|....|+..++++||+.||.++|+++|.+|++.|..
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g~ 187 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGA 187 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcccc
Confidence 346789999999987888999999999999999999999988789999999999999999999999999998643
No 35
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2.4e-13 Score=110.02 Aligned_cols=67 Identities=25% Similarity=0.556 Sum_probs=61.5
Q ss_pred CCCcccccCCcccccC-ceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~ 177 (476)
...++|.+|+++|..+ .+|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 4568999999999765 569999999999999999999999988899999999999999999999885
No 36
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=2.6e-13 Score=108.00 Aligned_cols=64 Identities=25% Similarity=0.526 Sum_probs=57.3
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCC-CceeeccCCccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHPK 175 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YCk~cY~~~f~~~ 175 (476)
...+.|++|+++|. +++|.++++.||++||+|..|+.+|. +..|+..++++||+.||.+++...
T Consensus 3 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 35679999999996 68999999999999999999999998 778889999999999998876543
No 37
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=4.8e-13 Score=108.06 Aligned_cols=76 Identities=14% Similarity=0.323 Sum_probs=64.1
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C 238 (476)
++.+||+.||.++|+++|..|+++|.+. .+.+.++ .||+.||+|..|.+.|..+..|++..++++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEF----------KYHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTC----------CBCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCc----------eeccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4689999999999999999999999953 4555543 46999999999999987778887457999999
Q ss_pred hhhHhhhcc
Q 011854 239 LECLDSAIM 247 (476)
Q Consensus 239 ~~C~~~~v~ 247 (476)
..||.+++.
T Consensus 68 ~~c~~~~~~ 76 (81)
T 1x6a_A 68 GKCHNEVVS 76 (81)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998654
No 38
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=7.2e-13 Score=106.67 Aligned_cols=78 Identities=17% Similarity=0.471 Sum_probs=64.7
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C 238 (476)
+|++||+.||.++|.++|..|+++|.+. .|.+.++ .||..||+|..|.+.| .+..|+ ..++++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPL-AGQQFT-SRDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBC-TTCCEE-ECSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcC-CCCeeE-eECCEEEC
Confidence 5899999999999999999999999873 4655543 4699999999999988 456777 67999999
Q ss_pred hhhHhhhccCCCCCC
Q 011854 239 LECLDSAIMDTNECQ 253 (476)
Q Consensus 239 ~~C~~~~v~d~~~Cq 253 (476)
..||.+++ .+.|.
T Consensus 66 ~~cy~~~f--~~~c~ 78 (80)
T 2cuq_A 66 VACFGELF--ASGPS 78 (80)
T ss_dssp HHHHHHHT--TCSTT
T ss_pred HHHHHHHc--CCCCC
Confidence 99999854 45553
No 39
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-13 Score=106.43 Aligned_cols=73 Identities=21% Similarity=0.488 Sum_probs=61.0
Q ss_pred CCcccccccccccccccccccCCcccC---CCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPS---NHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGR 235 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~---~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~ 235 (476)
+++|||+.||.++|.++|..|+++|.+ .. ..+.+.++ +||+.||+|..|.+.|. +..|+ ..+++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~-~~~~~ 67 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGS-SVVAYEGQ----------SWHDYCFHCKKCSVNLA-NKRFV-FHQEQ 67 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCC-CEEEETTE----------EEETTTCBCSSSCCBCT-TSCCC-EETTE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCc-eeEEECcc----------eeCcccCEehhcCCCCC-CCccE-eECCE
Confidence 478999999999999999999999996 22 35666654 36999999999999884 56776 66999
Q ss_pred ccchhhHhh
Q 011854 236 KLCLECLDS 244 (476)
Q Consensus 236 ~~C~~C~~~ 244 (476)
+||..||.+
T Consensus 68 ~yC~~cy~~ 76 (77)
T 2egq_A 68 VYCPDCAKK 76 (77)
T ss_dssp ECCHHHHHH
T ss_pred EEChHHhcc
Confidence 999999975
No 40
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.3e-13 Score=108.05 Aligned_cols=80 Identities=26% Similarity=0.610 Sum_probs=64.2
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C 238 (476)
+|+|||+.||.++|+++|..|+++|.... .++.+.+ ..||+.||+|..|.+.|. +..|+ ..++++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~----------~~~H~~CF~C~~C~~~L~-~~~f~-~~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYED----------RHFHEGCFRCCRCQRSLA-DEPFT-CQDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSS----------CCCBTTTSBCTTTCCBCS-SCCEE-EETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCC----------ccccccCCeecCCCCccC-CCccE-eeCCEEEC
Confidence 58999999999999999999999998422 3444444 347999999999999884 66776 56999999
Q ss_pred hhhHhhhccCCCCCC
Q 011854 239 LECLDSAIMDTNECQ 253 (476)
Q Consensus 239 ~~C~~~~v~d~~~Cq 253 (476)
..||.+++ .+.|.
T Consensus 68 ~~c~~~~~--~~~C~ 80 (82)
T 2ehe_A 68 NDCYCSAF--SSGPS 80 (82)
T ss_dssp TTTSSCCG--GGSSC
T ss_pred HHHHhhhc--CCCCC
Confidence 99998854 45554
No 41
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.34 E-value=4.7e-13 Score=117.36 Aligned_cols=63 Identities=22% Similarity=0.594 Sum_probs=56.9
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCC--CceeeccCCccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYH 173 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~--~~~f~~~dg~~YCk~cY~~~f~ 173 (476)
...++|++|+++|....++.++++.||+.||+|..|+.+|. +..|+.++|++||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 45689999999998666799999999999999999999997 4679999999999999999875
No 42
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.33 E-value=5.7e-13 Score=104.57 Aligned_cols=63 Identities=21% Similarity=0.517 Sum_probs=56.8
Q ss_pred CCCcccccCCcccccCc-eEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGR-FLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYH 173 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~-~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~ 173 (476)
...+.|++|+++|..++ ++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 45689999999998665 5689999999999999999999998889999999999999998874
No 43
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=1.7e-12 Score=104.96 Aligned_cols=78 Identities=17% Similarity=0.334 Sum_probs=64.2
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C 238 (476)
+|++||+.||. ++.++|..|+++|.+ ..+.+.++. ||+.||+|..|.+.|. +..|+...++++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~---~~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILD---RILRAMGKA----------YHPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCS---CCEEETTEE----------ECTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecc---eeEEECCcc----------ccHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 78999999999 799999999999986 356666543 6999999999999884 66776444789999
Q ss_pred hhhHhhhccCCCCCC
Q 011854 239 LECLDSAIMDTNECQ 253 (476)
Q Consensus 239 ~~C~~~~v~d~~~Cq 253 (476)
..||.+++ .+.|.
T Consensus 67 ~~cy~~~f--~~~C~ 79 (81)
T 2dlo_A 67 IEDFHRKF--ASGPS 79 (81)
T ss_dssp HHHHHHHT--TSSSC
T ss_pred HHHHHHHh--cCcCC
Confidence 99999854 56664
No 44
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.8e-12 Score=104.39 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=64.6
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C 238 (476)
+|++||+.||.++|.++|..|+++|.+. .|.+.+.. ||+.||+|..|.+.|.. ..|+ ..++++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTV----------WHPECFVCGDCFTSFST-GSFF-ELDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEE----------ECTTTCBCSSSCCBSCS-SCCE-ESSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCCe----------EecCcCChhhCCCCCCC-CcEE-eECCEEEC
Confidence 5789999999999999999999999973 46666543 69999999999998854 4676 56999999
Q ss_pred hhhHhhhccCCCCCC
Q 011854 239 LECLDSAIMDTNECQ 253 (476)
Q Consensus 239 ~~C~~~~v~d~~~Cq 253 (476)
..||.+++ .+.|.
T Consensus 66 ~~~y~~~f--~~~C~ 78 (80)
T 1x3h_A 66 ELHYHHRR--GSGPS 78 (80)
T ss_dssp HHHHHHHH--SSSCC
T ss_pred HHHHHHHc--CCCCC
Confidence 99999865 45564
No 45
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.31 E-value=1.3e-12 Score=114.16 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=65.4
Q ss_pred cccccCCcccccC-ceEeecCccccCCCcccCCCCCCC-CCceeeccCCcccccccccccccccccccCCcccCC
Q 011854 114 RICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPI-TDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSN 186 (476)
Q Consensus 114 ~~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L-~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~ 186 (476)
+.|++|++.|..+ .++.++++.||+.||+|..|+++| .+..|+..++++||+.||.++|.++|..|+..+...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 4899999999764 567999999999999999999999 566799999999999999999999999998877653
No 46
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.1e-12 Score=105.85 Aligned_cols=67 Identities=25% Similarity=0.530 Sum_probs=59.6
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCC-ceee-ccCCcccccccccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD-IEFS-TSENRPYHKSCYREHYHPKCDV 178 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~-~~f~-~~dg~~YCk~cY~~~f~~~C~~ 178 (476)
...++|++|+++|. +++|.++++.||++||+|..|+++|.. ..|+ ..++++||+.||.++|++.|.+
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 13 KFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp CSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred hcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCCC
Confidence 35678999999997 889999999999999999999999964 6677 5899999999999999988753
No 47
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=3.7e-12 Score=102.93 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=62.0
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccc
Q 011854 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (476)
Q Consensus 159 dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C 238 (476)
++.+||+.||.++|.++|..|+++|.... ..+.+.+. .||+.||+|..|.+.|.. ..|+ ..++++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIGT-GSFF-PKGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCTT-SCEE-EETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccCC-CccE-eeCCEEEC
Confidence 47899999999999999999999998532 34555543 469999999999998854 4676 56999999
Q ss_pred hhhHhhhcc
Q 011854 239 LECLDSAIM 247 (476)
Q Consensus 239 ~~C~~~~v~ 247 (476)
..||.+++.
T Consensus 68 ~~cy~~~f~ 76 (82)
T 1x63_A 68 VTCHETKFA 76 (82)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999988643
No 48
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.27 E-value=1.4e-12 Score=101.23 Aligned_cols=59 Identities=25% Similarity=0.635 Sum_probs=54.2
Q ss_pred CcccccCCccccc-CceEeecCcccc--CCCcccCCCCCCCCCceeeccCCcccc-ccccccc
Q 011854 113 YRICAGCNNEIGH-GRFLNCLDVFWH--PECFCCHACHQPITDIEFSTSENRPYH-KSCYREH 171 (476)
Q Consensus 113 ~~~C~~C~~~I~~-g~~v~algk~wH--~~CF~C~~C~~~L~~~~f~~~dg~~YC-k~cY~~~ 171 (476)
.+.|++|+++|.. ++.|.++++.|| +.||+|..|+++|.+..|+..+|++|| ++||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999987 489999999999 999999999999999999999999999 8998764
No 49
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=103.13 Aligned_cols=60 Identities=25% Similarity=0.595 Sum_probs=54.7
Q ss_pred CCCcccccCCccccc----CceEeecCccccCCCcccCCCCCCCCCceeeccCCcccccccccc
Q 011854 111 EGYRICAGCNNEIGH----GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYRE 170 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~----g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~ 170 (476)
...+.|++|+++|.. ..++.++++.||+.||+|..|+++|.+..|+..++++||+.||.+
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 456899999999973 388999999999999999999999999889999999999999965
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.20 E-value=1.5e-11 Score=99.22 Aligned_cols=74 Identities=16% Similarity=0.341 Sum_probs=60.1
Q ss_pred CcccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccch
Q 011854 160 NRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL 239 (476)
Q Consensus 160 g~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~ 239 (476)
+.+||+.||.++|+++|..|+++|.+ ..|.+.++ .||+.||+|..|.++|..+..|. .+++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~---~~v~a~~~----------~wH~~CF~C~~C~~~L~~~~~~~-~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEG---EVVSALGK----------TYHPDCFVCAVCRLPFPPGDRVT-FNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCS---CCEEETTE----------EECTTTSSCSSSCCCCCSSSCEE-EETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEecc---ceEEECCc----------eeCccCCccccCCCCCCCCCEEE-eCCCCEECh
Confidence 56899999999999999999999996 35666654 36999999999999886666554 555567999
Q ss_pred hhHhhhcc
Q 011854 240 ECLDSAIM 247 (476)
Q Consensus 240 ~C~~~~v~ 247 (476)
.||.++..
T Consensus 68 ~C~~~~~~ 75 (81)
T 1v6g_A 68 KCSLPVSV 75 (81)
T ss_dssp HHHSCCSS
T ss_pred hhhcccCC
Confidence 99987643
No 51
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=6.5e-11 Score=95.52 Aligned_cols=61 Identities=23% Similarity=0.472 Sum_probs=51.5
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCc-ccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENR-PYHKSCYREHY 172 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~-~YCk~cY~~~f 172 (476)
...++|++|+++|. +++|.++++.||+.||+|..|+++|....++..++. +||+.||.+.+
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 13 LYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp SCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred HhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 34579999999997 789999999999999999999999986555555554 69999997654
No 52
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=98.94 E-value=3.1e-10 Score=106.04 Aligned_cols=67 Identities=13% Similarity=0.305 Sum_probs=54.2
Q ss_pred ccccCCcccccC-ceEeecCccccCCCcccCCCCCCCC-CceeeccCCcccccccccccccccccccCC
Q 011854 115 ICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHPKCDVCKH 181 (476)
Q Consensus 115 ~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~ 181 (476)
.|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.+++.++|..++.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 799999999764 4689999999999999999999995 567888999999999999999999988775
No 53
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.88 E-value=4.4e-10 Score=98.51 Aligned_cols=60 Identities=22% Similarity=0.403 Sum_probs=54.0
Q ss_pred ccccCCcccccC-ceEeecCccccCCCcccCCCCCCC-CCceeeccCCcccccccccccccc
Q 011854 115 ICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPI-TDIEFSTSENRPYHKSCYREHYHP 174 (476)
Q Consensus 115 ~C~~C~~~I~~g-~~v~algk~wH~~CF~C~~C~~~L-~~~~f~~~dg~~YCk~cY~~~f~~ 174 (476)
.|.+|+++|... .++.++++.||+.||+|..|+++| .+..|+..++++||+.||.++|++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 899999999754 578999999999999999999999 467799999999999999988764
No 54
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=1.8e-09 Score=85.60 Aligned_cols=64 Identities=20% Similarity=0.414 Sum_probs=52.1
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
.+|+++|..|+++|.+. .|.+.+ .+||+.||+|..|++.|..+..|+ ..++++||..||.++..
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~----------~~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGE----------KHYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAART 65 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSS----------CCBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTSS
T ss_pred CcCcCCcccCCCEecCe---eEEeCC----------CCCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhhc
Confidence 36789999999999873 455544 357999999999999986577787 66999999999988643
No 55
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=94.44 Aligned_cols=61 Identities=23% Similarity=0.553 Sum_probs=54.6
Q ss_pred CCcccccCCccccc-CceEeecCcccc--CCCcccCCCCCCCCCceeeccCCcccccccccccc
Q 011854 112 GYRICAGCNNEIGH-GRFLNCLDVFWH--PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY 172 (476)
Q Consensus 112 ~~~~C~~C~~~I~~-g~~v~algk~wH--~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f 172 (476)
..+.|.+|+++|.. +.+|.++++.|| +.||+|..|+++|.+..|+..+|++||+.+|.++|
T Consensus 62 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 62 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp SCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred cCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 35789999999976 367999999999 99999999999999989999999999998877665
No 56
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.82 E-value=2.4e-09 Score=85.26 Aligned_cols=71 Identities=17% Similarity=0.353 Sum_probs=56.3
Q ss_pred ccccccccccCCcccC--CCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 170 EHYHPKCDVCKHFIPS--NHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~--~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
++|.++|..|+++|.+ .. ..|.+.++ +||+.||+|..|.+.|. +..|+ ..++++||..||.+.
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~-~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~cy~~~-- 66 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGA-KFICFQDS----------QWHSECFNCGKCSVSLV-GKGFL-TQNKEIFCQKCGSGM-- 66 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTC-CEEEETTE----------EEEGGGCBCTTTCCBCS-SSCEE-EETTEEEETTTTCCC--
T ss_pred CccCCCCccCCCcccCCCCc-eeEEECCc----------ccCcccCChhhCCCcCC-CCceE-eECCEEECHHHhhhh--
Confidence 4688999999999996 22 34666553 36999999999999884 67787 579999999999884
Q ss_pred CCCCCCcc
Q 011854 248 DTNECQPL 255 (476)
Q Consensus 248 d~~~Cqp~ 255 (476)
..+.|.++
T Consensus 67 f~~~C~~~ 74 (76)
T 1x68_A 67 DTDISGPS 74 (76)
T ss_dssp CCCSSSSS
T ss_pred hCCcCCCC
Confidence 46788765
No 57
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.81 E-value=5.6e-09 Score=85.90 Aligned_cols=76 Identities=14% Similarity=0.290 Sum_probs=59.2
Q ss_pred cccccccccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchh
Q 011854 161 RPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLE 240 (476)
Q Consensus 161 ~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~ 240 (476)
.+.+...+...+.++|..|+++|.+ ..|.+.++. ||+.||+|..|.+.|. +..|+ ..++++||..
T Consensus 13 ~~~~~~~~~~~~~~~C~~C~~~I~~---~~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~ 77 (90)
T 2dar_A 13 VQRAEHIPAGKRTPMCAHCNQVIRG---PFLVALGKS----------WHPEEFNCAHCKNTMA-YIGFV-EEKGALYCEL 77 (90)
T ss_dssp CBCCEEECTTTCCCBBSSSCCBCCS---CEEEETTEE----------ECTTTCBCSSSCCBCS-SSCBE-ESSSCEECHH
T ss_pred hhhcccCCCCCCCCCCccCCCEecc---eEEEECCcc----------ccccCCccCCCCCCCC-CCEeE-eECCEEECHH
Confidence 3445556777889999999999975 356666543 6999999999999885 56676 6799999999
Q ss_pred hHhhhccCCCCCC
Q 011854 241 CLDSAIMDTNECQ 253 (476)
Q Consensus 241 C~~~~v~d~~~Cq 253 (476)
||.+++ .++|.
T Consensus 78 cy~~~f--~~~c~ 88 (90)
T 2dar_A 78 CYEKFF--ASGPS 88 (90)
T ss_dssp HHHHHT--SCCCC
T ss_pred HHHHHc--CCCCC
Confidence 999854 46664
No 58
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.75 E-value=8.2e-09 Score=80.94 Aligned_cols=69 Identities=17% Similarity=0.429 Sum_probs=53.5
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCC
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~ 249 (476)
++|.++|..|+++|.+.. ..+.+.++ .||+.||+|..|.+.|.. ..|+ ..++++||..||.+.+ .
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC~~cy~~~f--~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGS----------SWHETCFICHRCQQPIGT-KSFI-PKDNQNFCVPCYEKQH--A 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTE----------EEETTTTCCSSSCCCCCS-SSEE-EETTEEEEHHHHHHHT--S
T ss_pred CccCCCCccCCCcccCCc-eEEEECcC----------eecccCCcccccCCccCC-CccC-ccCCeEECHHHHhHHh--C
Confidence 467899999999999642 34666554 369999999999998854 4777 5699999999999854 4
Q ss_pred CCCC
Q 011854 250 NECQ 253 (476)
Q Consensus 250 ~~Cq 253 (476)
+.|.
T Consensus 67 ~~C~ 70 (72)
T 1x4k_A 67 SGPS 70 (72)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5554
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=9.2e-09 Score=80.28 Aligned_cols=67 Identities=19% Similarity=0.382 Sum_probs=52.6
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCC
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~ 249 (476)
+++.++|..|+++|.+. .+.+.++ .||+.||+|..|.+.| .+..|+ ..++++||..||.+++ .
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC~~cy~~~f--~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQ----------PWHKECFVCTACRKQL-SGQRFT-ARDDFAYCLNCFCDLY--A 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSS----------EEETTTSBCSSSCCBC-TTSCCE-ESSSSEECHHHHHHHT--C
T ss_pred CCCCCCCcccCCeeccc---eEEECcc----------ccCCCCCccCCCCCcC-CcCceE-eeCCeEECHHHHHHHh--c
Confidence 35789999999999863 3555543 4699999999999988 466777 5799999999999854 4
Q ss_pred CCCC
Q 011854 250 NECQ 253 (476)
Q Consensus 250 ~~Cq 253 (476)
+.|.
T Consensus 65 ~~c~ 68 (70)
T 2d8z_A 65 SGPS 68 (70)
T ss_dssp CCCT
T ss_pred cccC
Confidence 5664
No 60
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.73 E-value=1e-08 Score=79.85 Aligned_cols=66 Identities=18% Similarity=0.451 Sum_probs=52.7
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCCC
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~ 250 (476)
++.++|..|+++|.++ .|.+.++. ||+.||+|..|.+.|. +..|+ ..++++||..||.+++ .+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~~f--~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQP----------WHADCFVCVTCSKKLA-GQRFT-AVEDQYYCVDCYKNFV--SG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTEE----------ECTTTTBCTTTCCBCT-TSCEE-ECSSCEEEHHHHHHHH--TC
T ss_pred CCcCCCcccCCEeCcc---eEEECccc----------cccCcCEECCCCCCCC-CCccE-eECCEEECHHHhHHHh--cC
Confidence 4678999999999863 46666543 6999999999999884 66777 6799999999999865 45
Q ss_pred CCC
Q 011854 251 ECQ 253 (476)
Q Consensus 251 ~Cq 253 (476)
.|.
T Consensus 66 ~C~ 68 (69)
T 2cur_A 66 PSS 68 (69)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 61
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.72 E-value=8.9e-09 Score=89.69 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=53.9
Q ss_pred ccccccc--cccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhh
Q 011854 168 YREHYHP--KCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (476)
Q Consensus 168 Y~~~f~~--~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~ 245 (476)
|.++|++ +|..|++.|.... .++.+.+ ..||..||+|..|.+.|..++.|+ ..++++||..||.++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~----------~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKD----------KVYHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSS----------CCCCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECC----------cccccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHH
Confidence 5678888 9999999998632 2344444 347999999999999987778887 569999999999886
Q ss_pred c
Q 011854 246 I 246 (476)
Q Consensus 246 v 246 (476)
+
T Consensus 69 ~ 69 (123)
T 2l3k_A 69 T 69 (123)
T ss_dssp H
T ss_pred h
Confidence 4
No 62
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.71 E-value=1.1e-08 Score=80.31 Aligned_cols=69 Identities=19% Similarity=0.443 Sum_probs=52.6
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCC
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~ 249 (476)
+++.++|..|+++|.... ..+.+.+ ..||..||+|..|.+.|. +..|+ ..++++||..||.+++ .
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~----------~~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~~f--~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGG----------QTWHEHCFLCSGCEQPLG-SRSFV-PDKGAHYCVPCYENKF--A 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTT----------CCEETTTCBCTTTCCBTT-TSCEE-EETTEEEEHHHHHHHT--S
T ss_pred CccCCCCccCCCccccCc-cEEEECc----------cccCcccCeECCCCCcCC-CCccC-CcCCeEECHHHHHHHc--c
Confidence 367899999999998532 2444444 347999999999999884 45676 5699999999998854 5
Q ss_pred CCCC
Q 011854 250 NECQ 253 (476)
Q Consensus 250 ~~Cq 253 (476)
+.|.
T Consensus 67 ~~C~ 70 (72)
T 1wyh_A 67 SGPS 70 (72)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 6664
No 63
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.71 E-value=1.6e-08 Score=79.34 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=51.2
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
.+.++|..|+++|.+.. ..+.+.++ .||..||+|..|.+.| .+..|+ ..++++||..||.+++.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDR----------VFHVGCFVCSTCRAQL-RGQHFY-AVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSS----------EECTTTCBCSSSCCBC-TTSCEE-ESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCC----------eEcccCCcccccCCcC-CcCcCE-eeCCeEECHHHHHHHHc
Confidence 46789999999998632 24555543 3699999999999988 577787 66999999999998754
No 64
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.70 E-value=1.7e-08 Score=79.21 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=49.8
Q ss_pred cccccccccCCcccCC-CCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 171 HYHPKCDVCKHFIPSN-HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~-~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
.+.++|..|+++|.+. +..++.+.+ .+||+.||+|..|.+.| .+..|+ ..++++||..||.++.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~----------~~wH~~CF~C~~C~~~L-~~~~f~-~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEE----------RQWHNDCFNCKKCSLSL-VGRGFL-TERDDILCPDCGKDIS 67 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSS----------CEECTTTCBCSSSCCBC-TTSCCE-ECSSSEECHHHHHTCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECC----------cccCcccCEeccCCCcC-CCCccE-eECCEEEChhHcCccc
Confidence 4678999999999961 113455554 34799999999999988 466776 5799999999998854
No 65
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.70 E-value=8.3e-09 Score=80.52 Aligned_cols=66 Identities=17% Similarity=0.371 Sum_probs=51.5
Q ss_pred ccccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 168 YREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 168 Y~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
|...+.++|..|+++|.+.. .++.+.+. .||..||+|..|++.+..+ .|+ ..+|++||..||.+++
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFY-EFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTE----------EEETTTSSCTTTCCCCGGG-CCE-EETTEEECHHHHHHHT
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcC----------eeCcCCCcccCCCCCCCCC-CeE-eECCeEeCHHHHHHhh
Confidence 34577899999999999743 23455553 3699999999999988655 676 5689999999998753
No 66
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.69 E-value=1.8e-08 Score=93.46 Aligned_cols=84 Identities=14% Similarity=0.290 Sum_probs=64.6
Q ss_pred CCccccccccc---ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCc
Q 011854 159 ENRPYHKSCYR---EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGR 235 (476)
Q Consensus 159 dg~~YCk~cY~---~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~ 235 (476)
++..||..++. ....++|..|+++|.+.. ++.+.++ .||+.||+|..|++.|.. ..| ..+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~-~~f--~~~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDR----------HWHSKCLKCSDCHVPLAE-RCF--SRGES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTE----------EECSSTTSCTTTCCCCSS-CCE--EETTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCC----------eEccccCccCCCCCccCC-Cce--eECCE
Confidence 45678888775 455789999999998732 3455543 369999999999998844 445 46999
Q ss_pred ccchhhHhhhccCCCCCCcchhhH
Q 011854 236 KLCLECLDSAIMDTNECQPLYLDI 259 (476)
Q Consensus 236 ~~C~~C~~~~v~d~~~Cqp~~~~I 259 (476)
+||..||.+++ .+.|..|...|
T Consensus 108 ~yC~~~y~~~f--~~kC~~C~~~I 129 (182)
T 2jtn_A 108 VYCKDDFFKRF--GTKCAACQLGI 129 (182)
T ss_dssp EECHHHHHHTT--SCCCTTTCCCC
T ss_pred eeecCcccccc--ccccccCCCcc
Confidence 99999999854 68899997655
No 67
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.67 E-value=1e-08 Score=79.23 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=49.6
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
+++.++|..|+++|.+ ..+.+.+ ..||+.||+|..|++.+. +..|+ ..++++||..||.+++
T Consensus 2 ~~~~~~C~~C~~~I~~---~~~~a~~----------~~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 2 SMGVPICGACRRPIEG---RVVNAMG----------KQWHVEHFVCAKCEKPFL-GHRHY-ERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCCCEETTTTEECCS---CEECCTT----------SBEETTTCBCTTTCCBCS-SSCCE-EETTEEECHHHHHHHC
T ss_pred CcCCCCCcccCCEecc---eEEEECc----------cccccCcCEECCCCCCCC-CCceE-eECCcEECHHHHHHHh
Confidence 3578999999999985 2455544 347999999999999884 56776 6799999999998754
No 68
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.67 E-value=1.3e-08 Score=78.69 Aligned_cols=61 Identities=18% Similarity=0.402 Sum_probs=48.3
Q ss_pred ccccccccCCcccCCCCcceEEcccCccccccCCCCcc--CCCCccCCCCcccCCCCceEEecCCcccc-hhhHhhh
Q 011854 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEH--DGTPRCCSCERMEPQDTAYVALDDGRKLC-LECLDSA 245 (476)
Q Consensus 172 f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H--~~CF~C~~C~r~~~~g~~y~~l~dg~~~C-~~C~~~~ 245 (476)
|+++|..|+++|.... ..|.+.++ +|| +.||+|..|+++| .+..|+ ..+|++|| ..||.++
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~----------~wH~~~~CF~C~~C~~~L-~~~~f~-~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNF----------SWHASTECFLCSCCSKCL-IGQKFM-PVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTE----------EEETTTTTSBCTTTCCBC-TTSCCE-EETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCC----------ccCCCCCCEECCCCCCcC-CCCceE-EECCEEecCHHHhhhh
Confidence 5789999999999532 35666654 369 9999999999988 566777 56999999 9999764
No 69
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.65 E-value=1.7e-08 Score=84.36 Aligned_cols=74 Identities=23% Similarity=0.510 Sum_probs=59.0
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCCC
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~ 250 (476)
.+.++|..|+++|.... ..+.+.++ .||..||+|..|++.| .+..|+ ..+|++||..||.++ ..+
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~g~~yC~~cy~~~--~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGADS-KEVHYKNR----------FWHDTCFRCAKCLHPL-ANETFV-AKDNKILCNKCTTRE--DSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSSS-CEEEETTE----------EEETTTCCCSSSCCCT-TSSCCE-EETTEEECHHHHTTC--CCC
T ss_pred CCCCcCcccCCcccCCc-eEEEECcc----------ChhhcCCcccccCCCC-CcCeeE-CcCCEEEChhHhhhh--cCC
Confidence 46789999999997422 35666554 3699999999999988 566776 679999999999984 468
Q ss_pred CCCcchhhH
Q 011854 251 ECQPLYLDI 259 (476)
Q Consensus 251 ~Cqp~~~~I 259 (476)
.|..|.+.|
T Consensus 68 ~C~~C~~~I 76 (101)
T 2cup_A 68 KCKGCFKAI 76 (101)
T ss_dssp BCSSSCCBC
T ss_pred ccccCCCcc
Confidence 999998665
No 70
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.63 E-value=6.5e-09 Score=90.44 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=60.1
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCC-CCceEEecCCcccchhhHhhhccCC
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQ-DTAYVALDDGRKLCLECLDSAIMDT 249 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~-g~~y~~l~dg~~~C~~C~~~~v~d~ 249 (476)
++.++|..|+++|.+.. ++.+.++ .||+.||+|..|++.|.. +..|+ ..+|++||..||.+.+...
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~~~ 69 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNS 69 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTE----------EECHHHHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHCCC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCc----------eeHhhCCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcCCC
Confidence 46789999999999742 4666554 369999999999998852 46777 6799999999999976433
Q ss_pred CCCCcchhhH
Q 011854 250 NECQPLYLDI 259 (476)
Q Consensus 250 ~~Cqp~~~~I 259 (476)
..|..|.+.|
T Consensus 70 ~~C~~C~~~I 79 (122)
T 1m3v_A 70 GAGGSGGHMG 79 (122)
T ss_dssp CSSSCSSCCS
T ss_pred CccccCCCCc
Confidence 3899998766
No 71
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.61 E-value=4.4e-08 Score=77.78 Aligned_cols=68 Identities=15% Similarity=0.298 Sum_probs=52.8
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccch-hhHhhhccC
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL-ECLDSAIMD 248 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~-~C~~~~v~d 248 (476)
..+.++|..|+++|.... .+.+.++ .||+.||+|..|.+.|. +..|+ ..++++||. .||.+++
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~cy~~~f-- 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGK----------DWHKFCLKCERCSKTLT-PGGHA-EHDGKPFCHKPCYATLF-- 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTE----------EEETTTCBCSSSCCBCC-TTSCE-EETTEEECTTTHHHHHS--
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCe----------EeeCCCCCCCCCCCccC-CCceE-eECCEEecchHHHHHhc--
Confidence 356789999999998543 4666554 36999999999999884 56677 569999999 7998854
Q ss_pred CCCCC
Q 011854 249 TNECQ 253 (476)
Q Consensus 249 ~~~Cq 253 (476)
.+.|.
T Consensus 70 ~~kc~ 74 (76)
T 2cu8_A 70 GSGPS 74 (76)
T ss_dssp CSSCS
T ss_pred ccccC
Confidence 56664
No 72
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.60 E-value=4.2e-08 Score=76.55 Aligned_cols=62 Identities=24% Similarity=0.477 Sum_probs=49.7
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
.+.++|..|+++|.+. .+.+.++. ||+.||+|..|.+.|..+ .|+ ..++++||..||.+...
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~~~-~f~-~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR---VIKAMNNS----------WHPECFRCDLCQEVLADI-GFV-KNAGRHLCRPCHNREKA 64 (70)
T ss_dssp CCSSBCSSSCCBCCSC---CEEETTEE----------ECTTTSBCSSSCCBCSSS-CCE-EETTEEECHHHHHHHHC
T ss_pred CCCCcCccCCCEecce---EEEECccc----------ccccCCEeCCCCCcCCCC-ccE-eECCeEECHHHhhhhcC
Confidence 3568999999999863 46666543 699999999999988544 666 57999999999998654
No 73
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.60 E-value=1.8e-08 Score=92.30 Aligned_cols=64 Identities=23% Similarity=0.454 Sum_probs=53.8
Q ss_pred CcccccCCcccccCc-eEeecCccccCCCcccCCCCCCCC-Cceee-ccCCcccccccccccccccc
Q 011854 113 YRICAGCNNEIGHGR-FLNCLDVFWHPECFCCHACHQPIT-DIEFS-TSENRPYHKSCYREHYHPKC 176 (476)
Q Consensus 113 ~~~C~~C~~~I~~g~-~v~algk~wH~~CF~C~~C~~~L~-~~~f~-~~dg~~YCk~cY~~~f~~~C 176 (476)
.+.|.+|+++|..++ ++.++++.||+.||+|..|+++|. +..|+ ..+|++||+.||.+.+...+
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~ 131 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGS 131 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC-
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccC
Confidence 578999999997655 468999999999999999999997 45554 56899999999998876654
No 74
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.59 E-value=3.4e-08 Score=78.40 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=51.1
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCCC
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~ 250 (476)
.+.++|..|+++|.... .++.+.++ .||..||+|..|++.+..+ .|+ ..+|++||..||.+++ .+
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~~f--~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFY-EFEGRKYCEHDFQMLF--AP 73 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTE----------EECTTTCCCTTTCCCCGGG-CSE-EETTEEECHHHHHHHC--CC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCcc----------EeccccCeECCCCCCCCCC-CeE-eECCeEeCHHHHHHHh--hc
Confidence 46789999999997532 34556654 3699999999999988554 566 5699999999999854 45
Q ss_pred CC
Q 011854 251 EC 252 (476)
Q Consensus 251 ~C 252 (476)
.|
T Consensus 74 ~C 75 (77)
T 1g47_A 74 CW 75 (77)
T ss_dssp C-
T ss_pred cc
Confidence 55
No 75
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.57 E-value=4e-08 Score=85.85 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=50.8
Q ss_pred ccccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccC-CCCceEEecCCcccchhhHhhhc
Q 011854 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEP-QDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 170 ~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~-~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
..+.++|..|+++|.+.. ++.+.++ .||+.||+|..|++.|. .+..|+ ..+|++||..||.+++
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~~~g~~f~-~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLF 122 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTE----------EEETTTSBCTTTCCBGGGTTCCCB-CSSSCCBCHHHHHHHC
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCc----------EEcccccCcCcCCCcccccCCceE-EECCEEeCHHHhhhhc
Confidence 346789999999998742 4666553 36999999999999885 356787 6799999999998753
No 76
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.55 E-value=5.5e-08 Score=77.20 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=52.5
Q ss_pred ccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccch-hhHhhhccCCCCC
Q 011854 174 PKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL-ECLDSAIMDTNEC 252 (476)
Q Consensus 174 ~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~-~C~~~~v~d~~~C 252 (476)
|+|..|+++|.... .+.+.++ .||+.||+|..|++.|..+ .|+ ..+|++||. .||.+++ .+.|
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~cy~~~f--~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLGK----------DWHRPCLKCEKCGKTLTSG-GHA-EHEGKPYCNHPCYSAMF--GPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETTE----------EEETTTCBCTTTCCBCCTT-TEE-EETTEEEETTTHHHHHS--SCCC
T ss_pred CcCCCCCCEEECce--EEEECCc----------cccCCCCCccccCccCCCC-ceE-CcCCeEeeCHHHHHHHh--CccC
Confidence 68999999998432 4555543 3699999999999988544 677 579999999 6999854 6788
Q ss_pred Ccch
Q 011854 253 QPLY 256 (476)
Q Consensus 253 qp~~ 256 (476)
..|.
T Consensus 65 ~~C~ 68 (76)
T 1iml_A 65 FGRG 68 (76)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 8875
No 77
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.53 E-value=4.1e-08 Score=78.90 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=47.7
Q ss_pred ccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCCCC
Q 011854 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNE 251 (476)
Q Consensus 172 f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~~ 251 (476)
..++|..|+++|.... .+.+.++ .||+.||+|..|.+.|.. ..|+ ..++++||..||.+++ .+.
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC~~cy~~~f--~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGR----------SFHRCCFLCMVCRKNLDS-TTVA-IHDAEVYCKSCYGKKY--GPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTE----------EEESSSEECSSSCCEECS-SCCE-EETTEEECSHHHHHHC--C--
T ss_pred CCCcCcCcCccccCce--eEEeCCc----------ccccccCccCCCCCCCCC-CCeE-eeCCEEECHHHHHHHh--CCc
Confidence 4689999999997543 4555543 369999999999998844 4676 5699999999999854 577
Q ss_pred CCcch
Q 011854 252 CQPLY 256 (476)
Q Consensus 252 Cqp~~ 256 (476)
|..|-
T Consensus 70 c~gcg 74 (81)
T 1a7i_A 70 GYGYG 74 (81)
T ss_dssp -----
T ss_pred ccccC
Confidence 77664
No 78
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.48 E-value=1.3e-07 Score=75.90 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=47.4
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
.+.++|..|++.|.+. .|.+.+ ..||+.||+|..|.+.|.. ..| ..++++||..||.+++
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~----------~~~H~~CF~C~~C~~~L~~-~~f--~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKN----------DPYHPDHFNCANCGKELTA-DAR--ELKGELYCLPCHDKMG 72 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSS----------SCCCTTTSBCSSSCCBCCT-TCE--EETTEEECHHHHHTTS
T ss_pred cCCCCCccCCCEecce---EEEECc----------ceeCCCCCEeCCCCCccCC-CCE--eECCEEeCHHHHHHhC
Confidence 4578999999999953 455544 3479999999999998854 344 5699999999999854
No 79
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.47 E-value=1.4e-07 Score=76.03 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=49.7
Q ss_pred cccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCCCCC
Q 011854 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNEC 252 (476)
Q Consensus 173 ~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~~C 252 (476)
.++|..|++.|.... .+.+.++ .||+.||+|..|.+.|. + .|+ ..++++||..||.+++ .+.|
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~-~-~~~-~~~g~~yC~~~y~~~f--g~~C 77 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ--SLLALDK----------QWHVSCFKCQTCSVILT-G-EYI-SKDGVPYCESDYHAQF--GSGP 77 (80)
T ss_dssp CSCCTTTCCCCSSSC--CEEETTE----------EECTTTCBCSSSCCBCS-S-CCE-EETTEEECTTHHHHHT--TCCS
T ss_pred CCCCcCcCCeeCCCe--EEEECCc----------ccccccCCcCcCCCCcC-C-CeE-EECCEEECHHHHHHHc--CCCC
Confidence 578999999998532 4666554 36999999999999885 4 576 6799999999999864 4555
Q ss_pred C
Q 011854 253 Q 253 (476)
Q Consensus 253 q 253 (476)
.
T Consensus 78 ~ 78 (80)
T 2dj7_A 78 S 78 (80)
T ss_dssp T
T ss_pred C
Confidence 3
No 80
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.46 E-value=1.4e-07 Score=77.59 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=51.5
Q ss_pred cccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhccCCC
Q 011854 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~ 250 (476)
...++|..|++.|.+.. .+.+.+ ..||..||+|..|.+.|..+ .|+ ..++++||..||.+++ .+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~----------~~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~~f--~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQ----------QVFHISCFRCSYCNNKLSLG-TYA-SLHGRIYCKPHFNQLF--KS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSS----------SEEETTTCBCTTTCCBCCTT-TCC-CSSSCCCCHHHHHHHS--CC
T ss_pred CCCCcCccCCCccCCce--eEEECC----------CEECCCCCeeCCCCCCCCCC-CcE-eECCEEECHHHHHHHh--CC
Confidence 35689999999998643 354444 34799999999999988544 466 6799999999999854 56
Q ss_pred CCC
Q 011854 251 ECQ 253 (476)
Q Consensus 251 ~Cq 253 (476)
.|.
T Consensus 77 kc~ 79 (91)
T 2d8y_A 77 KGN 79 (91)
T ss_dssp CSC
T ss_pred CcC
Confidence 665
No 81
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.45 E-value=5.5e-08 Score=77.93 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=48.3
Q ss_pred cccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhcc
Q 011854 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (476)
Q Consensus 173 ~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~ 247 (476)
.++|..|+++|.+. .+.+.++ .||+.||+|..|.+.| .+..|+ ..++++||..||.+++.
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDR----------HRHPECYVCTDCGTNL-KQKGHF-FVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSC----------EECTTTTSCSSSCCCH-HHHCCE-ESSSCEECHHHHHHHHS
T ss_pred CCccccCCCCccCc---EEEECcc----------eeCcCcCeeCCCCCCC-CCCCeE-eECCEEECHHHHHHHhC
Confidence 57999999999973 4655543 3699999999999988 445676 56999999999998654
No 82
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.44 E-value=1.2e-07 Score=77.57 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=47.4
Q ss_pred ccccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhhhc
Q 011854 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (476)
Q Consensus 172 f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v 246 (476)
..++|..|++.|.+. .+.+.++ .||..||+|..|++.|. +..|+ ..++.+||..||.+++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK----------YRHPECFVCADCNLNLK-QKGYF-FVEGELYCETHARART 83 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC----------EECTTTCCCSSSCCCTT-TSCCE-EETTEEECHHHHHHHS
T ss_pred cCCCcccCCCEeccc---EEEECCc----------eECccCCEecCCCCCCC-CCCeE-eECCEEECHHHHHHHh
Confidence 357999999999973 4555443 36999999999999884 44676 4599999999999865
No 83
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.43 E-value=1.5e-07 Score=80.85 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred cccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCC-CCceEEecCCcccchhhHhhhccCCCC
Q 011854 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQ-DTAYVALDDGRKLCLECLDSAIMDTNE 251 (476)
Q Consensus 173 ~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~-g~~y~~l~dg~~~C~~C~~~~v~d~~~ 251 (476)
.++|..|+++|.+.. .+.+.+ ..||+.||+|..|++.|.. +..|+ ..+|++||..||.+++ .+.
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~----------~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~~f--~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAID----------QYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLG--GSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSS----------SEECTTTCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHHHH--TSC
T ss_pred CCCCcCCCCeeCCcE--EEEECc----------hhHHHhcCcccccCCchhcCCCeeE-EECCeeechHHHHHHh--Ccc
Confidence 478999999998631 455544 3479999999999998863 56787 6799999999999865 466
Q ss_pred CCcch
Q 011854 252 CQPLY 256 (476)
Q Consensus 252 Cqp~~ 256 (476)
|..|.
T Consensus 68 c~~c~ 72 (114)
T 1j2o_A 68 GHMGS 72 (114)
T ss_dssp CSSCB
T ss_pred cCcCC
Confidence 66553
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.38 E-value=1.6e-07 Score=76.00 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=46.8
Q ss_pred cccccccCCcccCCCCcceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEE-ecCCcccchhhHhhhcc
Q 011854 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVA-LDDGRKLCLECLDSAIM 247 (476)
Q Consensus 173 ~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~-l~dg~~~C~~C~~~~v~ 247 (476)
.++|..|++.|.... .+.+.++ .||..||+|..|++.|. +..|.. ..++++||..||.+++.
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~----------~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGH----------FFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTB----------CCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCcccCCCcccce--EEEECCC----------eeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhhc
Confidence 478999999997533 3444443 47999999999999874 455653 36999999999988543
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.33 E-value=5.6e-05 Score=49.97 Aligned_cols=28 Identities=43% Similarity=0.980 Sum_probs=26.6
Q ss_pred cccccCCcccccCceEeecCccccCCCc
Q 011854 114 RICAGCNNEIGHGRFLNCLDVFWHPECF 141 (476)
Q Consensus 114 ~~C~~C~~~I~~g~~v~algk~wH~~CF 141 (476)
+.|.+|++.|+..+.+.+.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 5899999999999999999999999998
No 86
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=91.72 E-value=0.13 Score=41.12 Aligned_cols=46 Identities=46% Similarity=0.562 Sum_probs=32.5
Q ss_pred cccchHHHHHHHhhhhhhhhcCC--Ccc----------CCCccccchHHHHHHHHHhc
Q 011854 42 EQENEDIDRAIALSLLEENQKGE--NVI----------DKESQVEEDEQLARAIQESL 87 (476)
Q Consensus 42 ~~~~e~~~~a~~~sl~e~~~~~~--~~~----------~~~~~~~~dE~l~r~lqes~ 87 (476)
+.++|||.+||++||.|-..... ..+ ......++|++|..+|+.||
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASL 66 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESL 66 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Confidence 67899999999999987533321 101 11123578999999999997
No 87
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=88.08 E-value=0.25 Score=30.68 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.8
Q ss_pred ccchHHHHHHHhhhhhhhhcCCC
Q 011854 43 QENEDIDRAIALSLLEENQKGEN 65 (476)
Q Consensus 43 ~~~e~~~~a~~~sl~e~~~~~~~ 65 (476)
+|.|++.-|||+|++|.+.+.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 47889999999999999887764
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=69.32 E-value=1.1 Score=37.73 Aligned_cols=101 Identities=21% Similarity=0.457 Sum_probs=58.4
Q ss_pred cccCCCCCCCCCc------eeeccCCccccccccccc--ccccccccCCcccCCCCcceEEcccCccccccCCCCccCCC
Q 011854 141 FCCHACHQPITDI------EFSTSENRPYHKSCYREH--YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGT 212 (476)
Q Consensus 141 F~C~~C~~~L~~~------~f~~~dg~~YCk~cY~~~--f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qkyC~~h~H~~C 212 (476)
+.|..|...+.+. .....=|..||..|..+. ....|..|.+.+.... +... + ....-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~---l~~l---~---------i~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR---YHPI---Y---------IGSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC---EEEC---B---------CSSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc---cccc---c---------cCCCC
Confidence 4566665554321 133345778888887543 3458999999887643 2111 1 12234
Q ss_pred CccCCCCcccCC----CCceEEecCCcccchhhHhhhccCCCCCCcch
Q 011854 213 PRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLY 256 (476)
Q Consensus 213 F~C~~C~r~~~~----g~~y~~l~dg~~~C~~C~~~~v~d~~~Cqp~~ 256 (476)
..|..|...+.. +...+...=|..+|..|..+.+.....|--|.
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 120 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCC
Confidence 678888764421 22234567788999999876544444554444
No 89
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=68.27 E-value=0.49 Score=39.04 Aligned_cols=32 Identities=22% Similarity=0.055 Sum_probs=25.7
Q ss_pred cccccCCCCCccccccccccccccccceEEEE
Q 011854 316 LWRPRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 316 ~~~~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+...+++||.|++||++++..-++.+|..+|
T Consensus 42 ~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lL 73 (95)
T 3gge_A 42 DSVKTICVGDHIESINGENIVGWRHYDVAKKL 73 (95)
T ss_dssp HHCTTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred HhcCCCCCCCEEEEECCEEccCCCHHHHHHHH
Confidence 35678999999999999999877777765554
No 90
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.90 E-value=2.6 Score=27.16 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=18.9
Q ss_pred ccCCCCCCCCCceeeccCCcccccccc
Q 011854 142 CCHACHQPITDIEFSTSENRPYHKSCY 168 (476)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~YCk~cY 168 (476)
+|..|++..-.-+-...+|+.|++.||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 678888877543444457888888875
No 91
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.63 E-value=0.34 Score=40.67 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=26.6
Q ss_pred cCCCCCccccccccccccccccceEEEEEecCchhHH
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp~~l 356 (476)
+|.+||+|++||+.++......++..+|...|-+..|
T Consensus 67 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l 103 (117)
T 1ujd_A 67 KLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEI 103 (117)
T ss_dssp SCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEE
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEE
Confidence 4889999999999999877666655554444444444
No 92
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=65.19 E-value=0.34 Score=41.27 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=25.9
Q ss_pred cCCCCCccccccccccc-cccccceEEEEEecCchhHH
Q 011854 320 RFGPGNQARNIITEPYK-LTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~-~~~~~ev~~il~l~glp~~l 356 (476)
+|++||+|++||+.++. .....++..+|.-.|-+..|
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l 109 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRL 109 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEE
Confidence 48899999999999997 66666655444334444444
No 93
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.97 E-value=5.4 Score=33.18 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=27.1
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccccccccccCCccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIP 184 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~ 184 (476)
+.|..|...+.+......-|..||..|....+...|..|...+.
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 55666665554432221467778888876665567777777664
No 94
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=62.56 E-value=4.2 Score=29.22 Aligned_cols=40 Identities=43% Similarity=0.558 Sum_probs=27.7
Q ss_pred ccccchHHHHHHHhhhhhhhhcCCCccCCCccccchHHHHHHHHHhccCCC
Q 011854 41 LEQENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLNLES 91 (476)
Q Consensus 41 ~~~~~e~~~~a~~~sl~e~~~~~~~~~~~~~~~~~dE~l~r~lqes~~~es 91 (476)
.+.|.||+.+|+|+|--|.+- .++.-.|-|+||-||.-.+
T Consensus 3 ~dEDEedlqrALalSRQE~dm-----------EDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 3 LDEDEEDLQRALALSRQEIDM-----------EDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------SSSHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHhhccc
Confidence 367788999999998543321 1233489999999986443
No 95
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.13 E-value=4.6 Score=30.42 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=29.5
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccCC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~~~ 186 (476)
+.|..|...+.+......=|..||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45666666665432222567788888875433 46899998888753
No 96
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.43 E-value=5.2 Score=29.92 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=26.7
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc-----cccccccCCcccCC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY-----HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f-----~~~C~~C~~~I~~~ 186 (476)
+.|..|...+.+... ..=|..||..|....+ ...|..|...|..+
T Consensus 21 ~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 455555555544222 2456778888876544 23788888877653
No 97
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=63.46 E-value=2 Score=35.83 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=27.2
Q ss_pred ccCCCCCccccccccccccccccceEEEEEecCch
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAILILYGLP 353 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp 353 (476)
..+.+||+|++||+.++......++..+|...+-.
T Consensus 70 aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~ 104 (112)
T 2lob_A 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE 104 (112)
Confidence 45789999999999999887777777776544433
No 98
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=58.64 E-value=0.74 Score=38.00 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=23.5
Q ss_pred cCCCCCccccccccccccccccceEEEEEecCch
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAILILYGLP 353 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp 353 (476)
+|++||+|++||+.++......++..++...|-+
T Consensus 62 ~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~ 95 (111)
T 1uju_A 62 RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDT 95 (111)
T ss_dssp SCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 3889999999999999876555544443333333
No 99
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.04 E-value=11 Score=27.04 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNH 187 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~ 187 (476)
+.|..|...+... ....=|..||..|... ....|..|...+....
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCCS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeecCC
Confidence 4566665555442 2223566677777655 3567888888776543
No 100
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=57.78 E-value=0.53 Score=38.48 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=18.9
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
++.+||+|++||+.++......++
T Consensus 51 ~L~~GD~I~~vng~~v~~~~~~~~ 74 (105)
T 2awx_A 51 KLQIGDKLLAVNSVSLEEVTHEEA 74 (105)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999976544443
No 101
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=56.61 E-value=0.53 Score=39.64 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=22.0
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+.+||+|++||+.++....+.++..+|
T Consensus 61 gL~~GD~Il~Ing~~v~~~~~~~~~~~l 88 (118)
T 1v6b_A 61 GVVKGDEIMAINGKIVTDYTLAEAEAAL 88 (118)
T ss_dssp SSCTTCEEEEESSCBCTTCBHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 6889999999999999876655544443
No 102
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=55.34 E-value=3.6 Score=44.53 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=30.8
Q ss_pred hhhhhhccchhhhhh--hc--C-----C--CC--CCcchhhhHHHHHHHHHHhhh
Q 011854 357 TGTILAHEMMHGWMR--LQ--G-----F--RT--LSPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 357 ~g~ilaHe~~Ha~l~--~~--g-----~--~~--l~~~~eEG~cq~~a~~wl~~~ 398 (476)
+.+++|||+.|.|-. +. . + ++ -...+-|||.+.++.+|+.+.
T Consensus 267 ~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~ 321 (597)
T 4fgm_A 267 FLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTS 321 (597)
T ss_dssp HHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHT
T ss_pred hhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHc
Confidence 357999999999954 21 1 0 11 136789999999999999754
No 103
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=55.08 E-value=7.6 Score=30.99 Aligned_cols=60 Identities=15% Similarity=0.323 Sum_probs=27.9
Q ss_pred cccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccc--ccccccccccccccccCCcccCC
Q 011854 114 RICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPY--HKSCYREHYHPKCDVCKHFIPSN 186 (476)
Q Consensus 114 ~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~Y--Ck~cY~~~f~~~C~~C~~~I~~~ 186 (476)
..|..|..+|.. .++ -+.|..|++.+....|-..=|++. |+.|-.. ...|..|+..|...
T Consensus 3 ~~CP~C~~~l~~------~~~-----~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~--~yFC~~C~~LiSkk 64 (81)
T 2jrp_A 3 ITCPVCHHALER------NGD-----TAHCETCAKDFSLQALCPDCRQPLQVLKACGAV--DYFCQNGHGLISKK 64 (81)
T ss_dssp CCCSSSCSCCEE------CSS-----EEECTTTCCEEEEEEECSSSCSCCCEEEETTEE--EECCTTTTCCCCTT
T ss_pred CCCCCCCCcccc------CCC-----ceECccccccCCCcccCcchhhHHHHHHhcCCc--CeeeccCCCEeecc
Confidence 357777777632 111 234666665443322222112221 3444322 33577777777663
No 104
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=54.96 E-value=3.8 Score=44.17 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=30.3
Q ss_pred hhhhccchhhhhhhc-CCCC-CCcchhhhHHHHHHHHHHhh
Q 011854 359 TILAHEMMHGWMRLQ-GFRT-LSPDVEEGICQVIAHWWLIS 397 (476)
Q Consensus 359 ~ilaHe~~Ha~l~~~-g~~~-l~~~~eEG~cq~~a~~wl~~ 397 (476)
.+||||+.|-|..-. .... -...+-|||...++++|++.
T Consensus 296 ~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 336 (605)
T 3cia_A 296 NLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEA 336 (605)
T ss_dssp HHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHH
Confidence 599999999997521 1222 24789999999999999986
No 105
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=54.86 E-value=1.3 Score=37.45 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=24.0
Q ss_pred ccccCCCCCccccccccccccccccceEEEE
Q 011854 317 WRPRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 317 ~~~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
....|++||+|++||+.++...++.++..+|
T Consensus 46 ~~aGL~~GD~Il~VNG~~v~~~~h~evv~~l 76 (113)
T 3soe_A 46 WCQGLQKGDIIKEIYHQNVQNLTHLQVVEVL 76 (113)
T ss_dssp GSTTCCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred HhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4567899999999999999877665544443
No 106
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=54.65 E-value=0.56 Score=37.28 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=23.1
Q ss_pred cCCCCCccccccccccccccccceEEEEEec
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAILILY 350 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~ 350 (476)
++++||+|++||+.++......++..+|.-.
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~ 69 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKS 69 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999999999766666654444333
No 107
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=53.82 E-value=0.72 Score=37.78 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=21.1
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
++.+||+|++||+.++......++..+|
T Consensus 54 ~L~~GD~Il~ING~~v~~~~~~~~~~~l 81 (97)
T 2ejy_A 54 SLHVGDEILEINGTNVTNHSVDQLQKAM 81 (97)
T ss_dssp CCCTTCEEEEETTBCCCSSCSHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3789999999999999865555554443
No 108
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.76 E-value=4.6 Score=29.81 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=27.1
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccCC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~~ 186 (476)
+.|..|...+.+.. ...=|..||..|..+.+ ...|..|...|..+
T Consensus 16 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 44555554443321 13456778888876544 35788888887653
No 109
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=53.49 E-value=1.5 Score=35.90 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=22.7
Q ss_pred ccCCCCCccccccccccccccccceEEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+|.+||+|++||+.++...+..++..+|
T Consensus 49 G~L~~GD~Il~Vng~~v~~~~~~~~~~~l 77 (103)
T 1ufx_A 49 GQLKVGHVILEVNGLTLRGKEHREAARII 77 (103)
T ss_dssp CSSCTTCBCCEETTEECTTCBHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 35889999999999999877666654443
No 110
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=53.01 E-value=30 Score=28.48 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCcccccCCcccccCceEeec--CccccCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCc
Q 011854 112 GYRICAGCNNEIGHGRFLNCL--DVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (476)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~al--gk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g 189 (476)
....|..|+..-...+.|... ++.||+.|..=.. .. ...+.-+|..|. .|.+|++.-... .
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-----~~----~~~~~W~C~~C~------~C~~C~~~~~~~--~ 68 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-----TP----LKRAGWQCPECK------VCQNCKQSGEDS--K 68 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-----CT----TTSTTCCCTTTC------CCTTTCCCSCCT--T
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-----cc----ccccCccCCcCC------cccccCccCCCC--C
Confidence 446788888753112334433 5789988864321 11 134567788774 689998765432 1
Q ss_pred ceEEcccCccccccCCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhh
Q 011854 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (476)
Q Consensus 190 ~i~~~~hpfw~qkyC~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~ 244 (476)
++ .=. .|+.-||..|..- ++ . .+..+.++|..|...
T Consensus 69 ll-~Cd-------~C~~~yH~~Cl~p-----pl---~---~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 69 ML-VCD-------TCDKGYHTFCLQP-----VM---K---SVPTNGWKCKNCRIC 104 (111)
T ss_dssp EE-ECS-------SSCCEEEGGGSSS-----CC---S---SCCSSCCCCHHHHCC
T ss_pred ee-ECC-------CCCcHHhHHhcCC-----cc---c---cCCCCCcCCcCCcCc
Confidence 22 211 3666677655431 11 1 134678999999653
No 111
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=52.80 E-value=1.1 Score=35.72 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=23.2
Q ss_pred cCCCCCccccccccccccccccceEEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAILI 348 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il~ 348 (476)
-+.+||+|++||+.++....+.+|..+|.
T Consensus 40 Gl~~GD~Il~VNG~~v~~~~~~evv~llr 68 (82)
T 1r6j_A 40 GLLTEHNICEINGQNVIGLKDSQIADILS 68 (82)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence 35699999999999998887777655544
No 112
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=52.47 E-value=7.1 Score=35.27 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCCCChhhHHHHHHHHHHhCHHHHHHHHHhhCC
Q 011854 441 ASPVYGDGFRAGQHAVQKYGLGRTLDHIRRTGR 473 (476)
Q Consensus 441 ~s~~yG~Gfr~~~~~~~~~gl~~~l~~~~~~g~ 473 (476)
+||-||++|+.+++.+++ +++.+|++|+....
T Consensus 141 pDPyy~~~Fe~v~~~I~~-~~~~ll~~l~~e~~ 172 (173)
T 4etm_A 141 PDPYYTGNFEEVCQLIKT-GCEQLLASIQKEKQ 172 (173)
T ss_dssp CCHHHHCCHHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 578899999999998865 58888999987543
No 113
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=52.24 E-value=18 Score=40.16 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=30.7
Q ss_pred hhhhhhccchhhhhhh-cCCC-CCCcchhhhHHHHHHHHHHhhh
Q 011854 357 TGTILAHEMMHGWMRL-QGFR-TLSPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 357 ~g~ilaHe~~Ha~l~~-~g~~-~l~~~~eEG~cq~~a~~wl~~~ 398 (476)
...+||||+.|-|..- -... --...+-|||...+++++++.-
T Consensus 259 ~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~ 302 (780)
T 1z5h_A 259 SANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTL 302 (780)
T ss_dssp HHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHh
Confidence 4469999999999741 1111 1237889999999999988753
No 114
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=51.58 E-value=0.82 Score=38.33 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=25.0
Q ss_pred cCCCCCccccccccccccccccceEEEEEecCchhHH
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp~~l 356 (476)
+|.+||+|++||+.++......++..+|...|-+..|
T Consensus 60 ~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l 96 (117)
T 1v62_A 60 ALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRL 96 (117)
T ss_dssp CCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 4889999999999999766665654444333333333
No 115
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=51.18 E-value=0.83 Score=38.09 Aligned_cols=26 Identities=4% Similarity=0.112 Sum_probs=20.3
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
+|.+||+|++||+.++......++..
T Consensus 68 ~L~~GD~Il~vng~~v~~~~~~~~~~ 93 (117)
T 2ehr_A 68 ALKTGDKILEVSGVDLQNASHSEAVE 93 (117)
T ss_dssp SCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 38899999999999998766555433
No 116
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=50.58 E-value=7 Score=34.82 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCCChhhHHHHHHHHHHhCHHHHHHHHHhhCC
Q 011854 441 ASPVYGDGFRAGQHAVQKYGLGRTLDHIRRTGR 473 (476)
Q Consensus 441 ~s~~yG~Gfr~~~~~~~~~gl~~~l~~~~~~g~ 473 (476)
+||-||++|+.+++.+++ ++..+|++|+..-+
T Consensus 124 pDPyy~~~F~~v~~~Ie~-~~~~ll~~l~~~~~ 155 (158)
T 3rof_A 124 PDPYYTNNFEGVYDMVLS-SCDNLIDYIVKDAN 155 (158)
T ss_dssp CCHHHHCCHHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCchHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 678899999999999976 67888888876544
No 117
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=50.19 E-value=6.6 Score=27.26 Aligned_cols=42 Identities=36% Similarity=0.452 Sum_probs=26.0
Q ss_pred cchHHHHHHHhhhhhhhhcCCCccCCCccccchHHHHHHHHHhccCCC
Q 011854 44 ENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLNLES 91 (476)
Q Consensus 44 ~~e~~~~a~~~sl~e~~~~~~~~~~~~~~~~~dE~l~r~lqes~~~es 91 (476)
+.|.+.-|+++| |.+-+.- .+.+.++++-|-++|.+|++.-.
T Consensus 3 EEEq~ALA~kmS--eQEA~~v----n~~eE~E~~llrKAIaESLn~~~ 44 (46)
T 2rr9_C 3 EEEQFALALKMS--EQEAREV----NSQEEEEEELLRKAIAESLNSCR 44 (46)
T ss_dssp SHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHh--HHHHHHh----hhHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555554 4433222 22466788889999999987644
No 118
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=49.45 E-value=6.6 Score=31.44 Aligned_cols=45 Identities=16% Similarity=0.394 Sum_probs=24.7
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~~ 185 (476)
+.|..|...+.+......-|..||..|....+ ...|..|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45555655554432222456777887764432 3467777666653
No 119
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=49.30 E-value=0.98 Score=38.18 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=22.2
Q ss_pred ccCCCCCccccccccccccccccceEEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+|.+||+|++||+.++......++..+|
T Consensus 70 G~L~~GD~Il~VNg~~v~~~~~~~~~~~l 98 (118)
T 3b76_A 70 GRIKTGDILLNVDGVELTEVSRSEAVALL 98 (118)
T ss_dssp CSSCTTCEEEEETTEEGGGSCHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 34889999999999999866665544443
No 120
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.22 E-value=11 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.486 Sum_probs=26.0
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--------cccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--------HPKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--------~~~C~~C~~~I~~ 185 (476)
+.|..|...+.+. ....=|..||..|....+ ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4555555555432 122456778888865432 4578888877765
No 121
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=49.03 E-value=0.91 Score=41.05 Aligned_cols=29 Identities=7% Similarity=-0.018 Sum_probs=22.2
Q ss_pred ccCCCCCccccccccccccccccceEEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+|++||+|++||+.++......++..+|
T Consensus 128 G~L~~GD~Il~VNG~~v~~~~~~~~~~~l 156 (170)
T 3egg_C 128 GRIQVNDLLVEVDGTSLVGVTQSFAASVL 156 (170)
T ss_dssp CCCCTTCEEEEETTEECTTBCHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 45899999999999999776665544433
No 122
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=48.93 E-value=0.61 Score=36.56 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=19.8
Q ss_pred ccCCCCCccccccccccccccccce
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
..+++||+|++||+.++......++
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~ 69 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEA 69 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHH
Confidence 3678999999999999876655444
No 123
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=48.77 E-value=0.86 Score=36.38 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=18.9
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
++++||+|++||+.++......++
T Consensus 51 ~l~~GD~I~~vng~~v~~~~~~~~ 74 (96)
T 1d5g_A 51 RIHKGDRVLAVNGVSLEGATHKQA 74 (96)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999986544443
No 124
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.50 E-value=1.9 Score=35.57 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred ccCCCCCccccccccccccccccceEEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+|.+||+|++||+.++......++..+|
T Consensus 58 G~l~~GD~Il~Vng~~~~~~~~~~~~~~l 86 (109)
T 1wi4_A 58 GRLKPGDQLVSINKESMIGVSFEEAKSII 86 (109)
T ss_dssp CSCCTTCBEEEETTSCCTTCCHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 45889999999999998876665554443
No 125
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=48.16 E-value=0.83 Score=38.38 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=19.5
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
+|.+||+|++||+.++......++.
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~ 96 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAV 96 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 3889999999999999865554443
No 126
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.67 E-value=0.89 Score=37.24 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=18.5
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+|++||+|++||+.++......+
T Consensus 58 ~L~~GD~I~~vng~~v~~~~~~~ 80 (107)
T 1wf8_A 58 RIQVNDQIVEVDGISLVGVTQNF 80 (107)
T ss_dssp SSCTTCBEEEETTEECBSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 38899999999999997654444
No 127
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=47.54 E-value=4.9 Score=43.61 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred hhhhccchhhhhhhc-CCCC-CCcchhhhHHHHHHHHHHhh
Q 011854 359 TILAHEMMHGWMRLQ-GFRT-LSPDVEEGICQVIAHWWLIS 397 (476)
Q Consensus 359 ~ilaHe~~Ha~l~~~-g~~~-l~~~~eEG~cq~~a~~wl~~ 397 (476)
.+||||++|-|..-. .... -...+-|||...++++|++.
T Consensus 297 ~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 337 (632)
T 2xq0_A 297 DVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGA 337 (632)
T ss_dssp HHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHH
Confidence 599999999997521 1111 23678999999999999985
No 128
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.51 E-value=1 Score=36.67 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.0
Q ss_pred CCCCCccccccccccccccccceEEE
Q 011854 321 FGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
|.+||+|++||+.++......++..+
T Consensus 57 L~~GD~I~~vng~~v~~~~~~~~~~~ 82 (105)
T 1wha_A 57 LQVGDRVLSINGVDVTEARHDHAVSL 82 (105)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88999999999999987555444333
No 129
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=47.25 E-value=0.81 Score=36.61 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=18.6
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
|.+||+|++||+.++......++
T Consensus 51 l~~GD~I~~ing~~v~~~~~~~~ 73 (97)
T 2jil_A 51 IKPGDRLLSVDGIRLLGTTHAEA 73 (97)
T ss_dssp CCTTCEEEEETTEECSSCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999987544443
No 130
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=47.10 E-value=0.81 Score=36.53 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=17.9
Q ss_pred cCCCCCcccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRC 341 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ 341 (476)
++++||+|++||+.++......
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~ 68 (95)
T 2vwr_A 47 RLSSNDRVLAINGHDLKYGTPE 68 (95)
T ss_dssp CCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCCCEEEEECCEECCCCCHH
Confidence 3889999999999998765443
No 131
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=47.10 E-value=12 Score=28.36 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=25.8
Q ss_pred cccCCCCCCCCCceeecc-CCccccccccccccc----ccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTS-ENRPYHKSCYREHYH----PKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~-dg~~YCk~cY~~~f~----~~C~~C~~~I~~ 185 (476)
+.|..|...+.+. .... =|..||..|....+. ..|..|...+..
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4555665555443 2233 477788888655432 468888876543
No 132
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=47.07 E-value=18 Score=28.81 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=18.1
Q ss_pred ccccchHHHHHHHhhhhhhhhc
Q 011854 41 LEQENEDIDRAIALSLLEENQK 62 (476)
Q Consensus 41 ~~~~~e~~~~a~~~sl~e~~~~ 62 (476)
.++|++||-.||+.||.|-+..
T Consensus 51 ~edeD~DLKAAIaASLrd~E~q 72 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAEEA 72 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHH
Confidence 3778999999999999876543
No 133
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=47.04 E-value=1 Score=37.16 Aligned_cols=23 Identities=4% Similarity=-0.129 Sum_probs=18.5
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
++++||+|++||+.++......+
T Consensus 53 ~l~~GD~I~~vng~~v~~~~~~~ 75 (113)
T 2g5m_B 53 RIQVNDLLVEVDGTSLVGVTQSF 75 (113)
T ss_dssp CSCTTCBEEEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 48899999999999997654444
No 134
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=46.85 E-value=7.7 Score=26.81 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=26.2
Q ss_pred ccchHHHHHHHhhhhhhhhcCCCccCCCccccchHHHHHHHHHhcc
Q 011854 43 QENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLN 88 (476)
Q Consensus 43 ~~~e~~~~a~~~sl~e~~~~~~~~~~~~~~~~~dE~l~r~lqes~~ 88 (476)
.+.|.+.-|+++|--|..+-.. .+.++||-|-++|.+|++
T Consensus 5 tEEEq~ALA~rmSeQEA~~vn~------~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAREVNN------QEEKEEELLRKAIAESLN 44 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHhc
Confidence 3556666666665444433322 367788999999999975
No 135
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.79 E-value=0.85 Score=36.59 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=20.5
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+++||+|++||+.++......++..+|
T Consensus 48 GL~~GD~Il~Ing~~v~~~~~~~~~~~l 75 (90)
T 1y7n_A 48 GVRVGHRIIEINGQSVVATPHEKIVHIL 75 (90)
T ss_dssp TCCSSCEEEEETTEECTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4789999999999999754444444433
No 136
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=46.74 E-value=0.95 Score=36.95 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.9
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
++.+||+|++||+.++......++
T Consensus 56 ~L~~GD~I~~ing~~v~~~~~~~~ 79 (106)
T 3axa_A 56 RLAAGDQLLSVDGRSLVGLSQERA 79 (106)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999986544443
No 137
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.60 E-value=0.95 Score=35.82 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=18.7
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
.+.+||+|++||+.++......++
T Consensus 48 gl~~GD~I~~vng~~v~~~~~~~~ 71 (93)
T 2dkr_A 48 GLKRGDQLLSVNGVSVEGEQHEKA 71 (93)
T ss_dssp CCCTTCBEEEETTEECTTSCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 478999999999999876544343
No 138
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=46.54 E-value=0.88 Score=37.94 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=27.6
Q ss_pred ccCCCCCccccccccccccccccceEEEEEe---cCchhHH
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAILIL---YGLPRLL 356 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il~l---~glp~~l 356 (476)
--+.+||+|+.||+.++......+|..+|.. .|.|..|
T Consensus 55 AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~L 95 (101)
T 3qik_A 55 AGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRL 95 (101)
T ss_dssp HTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEE
Confidence 3578999999999999976666676666544 3555554
No 139
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=46.47 E-value=0.89 Score=35.90 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=17.1
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-+++||+|++||+.++....
T Consensus 49 Gl~~GD~I~~vng~~v~~~~ 68 (91)
T 1m5z_A 49 GLKPYDRLLQVNHVRTRDFD 68 (91)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987653
No 140
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=46.45 E-value=8 Score=32.09 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=31.6
Q ss_pred cCCCCCCCCCceeeccCCcccccccccc---cccccccccCCcccC
Q 011854 143 CHACHQPITDIEFSTSENRPYHKSCYRE---HYHPKCDVCKHFIPS 185 (476)
Q Consensus 143 C~~C~~~L~~~~f~~~dg~~YCk~cY~~---~f~~~C~~C~~~I~~ 185 (476)
|..|+.|+....-..-=+..+|-+|+.. .-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6778888876544445567899999865 335689999999975
No 141
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=46.16 E-value=0.87 Score=36.83 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=18.4
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
++++||+|++||+.++......+
T Consensus 52 ~L~~GD~I~~vng~~v~~~~~~~ 74 (102)
T 2i1n_A 52 RLGVNDCVLRVNEVDVSEVVHSR 74 (102)
T ss_dssp CCCTTCEEEEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 38899999999999997654433
No 142
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.14 E-value=0.85 Score=38.25 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.6
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
+|.+||+|++||+.++......++..+
T Consensus 65 ~L~~GD~Il~vng~~v~~~~~~~~~~~ 91 (120)
T 2eno_A 65 RLQEGDKILSVNGQDLKNLLHQDAVDL 91 (120)
T ss_dssp CSCTTCEEEEETTEECCSCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999987655444333
No 143
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=46.13 E-value=12 Score=28.24 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccC
Q 011854 139 ECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (476)
Q Consensus 139 ~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~ 185 (476)
.-|.|..|...+.+. ....-|..||+.|..+.+ ...|..|+..+..
T Consensus 7 ~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 457788888877664 334678899999975543 3468888877764
No 144
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=46.05 E-value=0.93 Score=35.17 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=19.2
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-+.+||+|++||+.++......++
T Consensus 40 Gl~~GD~I~~ing~~v~~~~~~~~ 63 (83)
T 2kv8_A 40 GLRAGDQILAVNEINVKKASHEDV 63 (83)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 478999999999999987654444
No 145
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=45.95 E-value=9.9 Score=31.28 Aligned_cols=30 Identities=17% Similarity=0.454 Sum_probs=15.5
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREH 171 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~ 171 (476)
|.|..|...+... ....=|+.||..|....
T Consensus 16 ~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 16 CQCGICMEILVEP-VTLPCNHTLCKPCFQST 45 (115)
T ss_dssp HBCTTTCSBCSSC-EECTTSCEECHHHHCCC
T ss_pred CCCccCCcccCce-eEcCCCCHHhHHHHHHH
Confidence 4566665555432 12234566777775443
No 146
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=45.79 E-value=33 Score=28.58 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=46.6
Q ss_pred ceEeec--CccccCCCcccCCCCCCCCCc-eeeccCCcccccccccccccccccccCCcccCCCCcceEEcccCcccccc
Q 011854 127 RFLNCL--DVFWHPECFCCHACHQPITDI-EFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKY 203 (476)
Q Consensus 127 ~~v~al--gk~wH~~CF~C~~C~~~L~~~-~f~~~dg~~YCk~cY~~~f~~~C~~C~~~I~~~~~g~i~~~~hpfw~qky 203 (476)
+.|... ++.||+.|.. +... .-....+.-+|..| ..|.+|++.-.+ +.+..=. .
T Consensus 22 ~Li~C~~C~~~~H~~Cl~-------~~~~~~~~~~~~~W~C~~C------~~C~~C~~~~~~---~~ll~Cd-------~ 78 (114)
T 2kwj_A 22 ELVSCADCGRSGHPTCLQ-------FTLNMTEAVKTYKWQCIEC------KSCILCGTSEND---DQLLFCD-------D 78 (114)
T ss_dssp CCEECSSSCCEECTTTTT-------CCHHHHHHHHHTTCCCGGG------CCCTTTTCCTTT---TTEEECS-------S
T ss_pred CCeEeCCCCCccchhhCC-------ChhhhhhccCCCccCcccc------CccCcccccCCC---CceEEcC-------C
Confidence 445444 5678888752 1110 00123456678777 368999876433 2233322 3
Q ss_pred CCCCccCCCCccCCCCcccCCCCceEEecCCcccchhhHhh
Q 011854 204 CPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (476)
Q Consensus 204 C~~h~H~~CF~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~ 244 (476)
|+..||..|..= ++. .+..|.++|..|...
T Consensus 79 C~~~yH~~Cl~p-----pl~------~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 79 CDRGYHMYCLNP-----PVA------EPPEGSWSCHLCWEL 108 (114)
T ss_dssp SCCEEETTTSSS-----CCS------SCCSSCCCCHHHHHH
T ss_pred CCccccccccCC-----Ccc------CCCCCCeECccccch
Confidence 677778665431 121 135678999999654
No 147
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=45.59 E-value=0.93 Score=36.60 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
++++||+|++||+.++......++
T Consensus 55 ~L~~GD~I~~vng~~v~~~~~~~~ 78 (101)
T 2jik_A 55 RLQEGDKILSVNGQDLKNLLHQDA 78 (101)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999976544443
No 148
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=44.72 E-value=1.2 Score=37.68 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=18.6
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+|.+||+|++||+.++......+
T Consensus 69 ~L~~GD~Il~Ing~~v~~~~~~~ 91 (124)
T 2daz_A 69 RMRIGDELLEINNQILYGRSHQN 91 (124)
T ss_dssp CCCTTCEECEESSCBCTTSCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 48899999999999997654444
No 149
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=44.34 E-value=5 Score=32.49 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=18.8
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
|++||+|++||+.++......++
T Consensus 63 L~~GD~Il~ing~~v~~~~~~~~ 85 (107)
T 3nfk_A 63 LNEGDQVVLINGRDIAEHTHDQV 85 (107)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred cCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999876654443
No 150
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=44.27 E-value=2.2 Score=33.80 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.5
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
++.+||+|++||+.++......++.
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~ 70 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEII 70 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 4889999999999999655554443
No 151
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=44.07 E-value=1.1 Score=35.46 Aligned_cols=27 Identities=4% Similarity=-0.223 Sum_probs=19.9
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
-+.+||+|++||+.++......++..+
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 70 (91)
T 2vsp_A 44 GLEDEDVIIEVNGVNVLDEPYEKVVDR 70 (91)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999975444444333
No 152
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.01 E-value=1.2 Score=36.22 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=17.9
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
|++||+|++||+.++......+
T Consensus 57 l~~GD~I~~vng~~v~~~~~~~ 78 (104)
T 2djt_A 57 LEVGDLVLHINGESTQGLTHAQ 78 (104)
T ss_dssp CCTTCBEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987654433
No 153
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=43.97 E-value=2.3 Score=34.97 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=21.7
Q ss_pred ccCCCCCccccccccccccccccceEEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+|++||+|++||+.++......++..+|
T Consensus 50 G~L~~GD~Il~Vng~~v~~~~~~~~~~~l 78 (108)
T 3cbz_A 50 GRIEPGDMLLQVNDMNFENMSNDDAVRVL 78 (108)
T ss_dssp CCCCTTCEEEEETTEETTSCCHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 34889999999999999876555544433
No 154
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=43.84 E-value=2.4 Score=36.31 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=19.1
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+|++||+|++||+.++......++
T Consensus 83 ~L~~GD~Il~ing~~v~~~~~~~~ 106 (131)
T 1wfg_A 83 HLRPGDEVLEWNGRLLQGATFEEV 106 (131)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 488999999999999976544443
No 155
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=43.83 E-value=2.8 Score=35.73 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=21.6
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
.|++||+|++||+.++....+.++..+
T Consensus 75 gL~~GD~Il~Vng~~v~~~~~~~~~~~ 101 (130)
T 1i16_A 75 TVQPGDEILQLGGTAMQGLTRFEAWNI 101 (130)
T ss_dssp CCCTTCCEEECSSCBGGGSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 788999999999999987666554443
No 156
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=43.80 E-value=1.1 Score=36.29 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=21.5
Q ss_pred ccCCCCCccccccccccccccccceEEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
..+++||+|++||+.++......++..+|
T Consensus 54 ggl~~GD~I~~Ing~~v~~~~~~~~~~~l 82 (101)
T 2yt7_A 54 GALSIGDRLTAINGTSLVGLPLAACQAAV 82 (101)
T ss_dssp SSCCTTCEEEEESSCBCTTSCHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 45789999999999999655555554443
No 157
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=43.73 E-value=1.2 Score=36.59 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=18.2
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
|.+||+|++||+.++......+
T Consensus 58 L~~GD~Il~Vng~~v~~~~~~~ 79 (113)
T 1um7_A 58 LRRGDRILSVNGVNLRNATHEQ 79 (113)
T ss_dssp CCTTCEEEEESSCBCTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999997764433
No 158
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=43.72 E-value=1.2 Score=36.18 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=25.2
Q ss_pred ccCCCCCccccccccccccccccceEEEEEecCchhHH
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp~~l 356 (476)
.-|.+||+|++||+.++......++..+|...|-+..|
T Consensus 45 aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 82 (103)
T 1v5l_A 45 ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCL 82 (103)
T ss_dssp GTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEEC
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 45789999999999999875555554444333444433
No 159
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=43.68 E-value=2.3 Score=33.63 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=20.6
Q ss_pred ccCCCCCccccccccccccccccceEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
..+++||+|++||+.++......++..
T Consensus 42 agL~~GD~I~~Ing~~v~~~~~~~~~~ 68 (88)
T 1kwa_A 42 GTLHVGDEIREINGISVANQTVEQLQK 68 (88)
T ss_dssp TCCCTTCEEEEETTEEGGGSCHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 457899999999999998555555433
No 160
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=43.59 E-value=2.3 Score=33.37 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=17.7
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+.+||+|++||+.++......+
T Consensus 46 L~~GD~I~~ing~~v~~~~~~~ 67 (90)
T 2q9v_A 46 LRSGDELISVDGTPVIGKSHQL 67 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999996544433
No 161
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=43.59 E-value=1 Score=36.33 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=17.9
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
|.+||+|++||+.++......+
T Consensus 55 l~~GD~I~~vng~~v~~~~~~~ 76 (103)
T 1wfv_A 55 MRVGDQIIEINGESTRDMTHAR 76 (103)
T ss_dssp SCTTCEEEEETTEECSSCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987654433
No 162
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=43.25 E-value=1.1 Score=34.75 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=18.1
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+.+||+|++||+.++......++
T Consensus 44 l~~GD~I~~vng~~v~~~~~~~~ 66 (85)
T 2i04_A 44 METGDVIVSVNDTCVLGHTHAQV 66 (85)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999975444343
No 163
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=43.14 E-value=1.1 Score=37.32 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=24.3
Q ss_pred ccCCCCCccccccccccccccccceEEEEEecCchhHH
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp~~l 356 (476)
..|.+||+|++||+.++......++..++...|-+..|
T Consensus 61 ~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 98 (117)
T 2csj_A 61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAI 98 (117)
T ss_dssp HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEE
T ss_pred ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence 34789999999999999876554433333323434333
No 164
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=43.07 E-value=1.3 Score=39.69 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=21.2
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
++++||+|++||+.|+......++..+|
T Consensus 148 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l 175 (196)
T 3gsl_A 148 RLQIGDKILAVNSVGLEDVMHEDAVAAL 175 (196)
T ss_dssp CCCTTCEEEEETTEECSSCBHHHHHHHH
T ss_pred CCCCCCEEEEECCCcCCCCCHHHHHHHH
Confidence 4899999999999999875555543333
No 165
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=43.03 E-value=2.3 Score=34.27 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=21.4
Q ss_pred cccCCCCCccccccccccccccccceEE
Q 011854 318 RPRFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 318 ~~~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
...|++||+|++||++++......++..
T Consensus 45 ~aGL~~GD~I~~vng~~v~~~~~~~~~~ 72 (96)
T 1ujv_A 45 CPGLCEGDLIVEINQQNVQNLSHTEVVD 72 (96)
T ss_dssp STTCCSSCEEEEETTEECSSCCHHHHHH
T ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 3567899999999999998765555433
No 166
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.93 E-value=1.4 Score=36.08 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=18.9
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+|.+||+|++||+.++......++
T Consensus 60 ~L~~GD~I~~vng~~v~~~~~~~~ 83 (108)
T 1q7x_A 60 RIHKGDRVLAVNGVSLEGATHKQA 83 (108)
T ss_dssp CCCSSCEEEEETTEECBSCTTSHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999975544443
No 167
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=42.92 E-value=1 Score=35.44 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=18.3
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
-+.+||+|++||+.++......+
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~ 66 (89)
T 2q3g_A 44 GVAVGDWVLSIDGENAGSLTHIE 66 (89)
T ss_dssp TCCTTCEEEEETTEEGGGCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 47899999999999998654433
No 168
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=42.86 E-value=13 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=15.1
Q ss_pred CCcccccccccccc--cccccccCCccc
Q 011854 159 ENRPYHKSCYREHY--HPKCDVCKHFIP 184 (476)
Q Consensus 159 dg~~YCk~cY~~~f--~~~C~~C~~~I~ 184 (476)
=+..||..|..+.+ ...|..|...|.
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45566666654322 256777776664
No 169
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=42.74 E-value=10 Score=30.91 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=24.9
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIP 184 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~ 184 (476)
+.|..|...+.+......-|..||..|....+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 56777766665532222567778887764432 245555555544
No 170
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=42.59 E-value=1.2 Score=37.02 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=17.2
Q ss_pred cCCCCCccccccccccc-cccc
Q 011854 320 RFGPGNQARNIITEPYK-LTRR 340 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~-~~~~ 340 (476)
++++||+|++||+.++. ....
T Consensus 67 ~l~~GD~Il~ing~~v~~~~~~ 88 (117)
T 2o2t_A 67 RLKETDQILAINGQALDQTITH 88 (117)
T ss_dssp CCCTTCEEEEETTEECCTTSCH
T ss_pred CCCCCCEEEEECCEECCCCCCH
Confidence 38899999999999997 4433
No 171
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=42.49 E-value=24 Score=39.92 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=30.2
Q ss_pred hhhhhhccchhhhhhhc-CCCCC-CcchhhhHHHHHHHHHHhhh
Q 011854 357 TGTILAHEMMHGWMRLQ-GFRTL-SPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 357 ~g~ilaHe~~Ha~l~~~-g~~~l-~~~~eEG~cq~~a~~wl~~~ 398 (476)
...+||||+.|-|..=. ....- ...+-|||..++.++|.+..
T Consensus 295 i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 338 (889)
T 3ebh_A 295 ILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEM 338 (889)
T ss_dssp HHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHh
Confidence 45699999999996421 11122 36789999999998887654
No 172
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=42.44 E-value=1.2 Score=35.14 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=19.6
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
-+.+||+|++||+.++......++.
T Consensus 45 Gl~~GD~I~~ing~~v~~~~~~~~~ 69 (90)
T 2he4_A 45 GLRAQDRLIEVNGQNVEGLRHAEVV 69 (90)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 3789999999999999876544443
No 173
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.24 E-value=2.5 Score=34.25 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.7
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+|++||+|++||+.++......++
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~ 75 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYV 75 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999976544443
No 174
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=42.22 E-value=1.3 Score=36.39 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=17.8
Q ss_pred cCCCCCcccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRC 341 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ 341 (476)
++++||+|++||+.++......
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~ 71 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHE 71 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHH
T ss_pred CCCCCCEEEEECCEECCCCCHH
Confidence 4889999999999998764443
No 175
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.85 E-value=13 Score=30.14 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=14.4
Q ss_pred CCccccccccccccc-----ccccccCCccc
Q 011854 159 ENRPYHKSCYREHYH-----PKCDVCKHFIP 184 (476)
Q Consensus 159 dg~~YCk~cY~~~f~-----~~C~~C~~~I~ 184 (476)
=|+.||..|....+. ..|..|...|.
T Consensus 39 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 39 CDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 456677777654332 24556655554
No 176
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=41.81 E-value=1.2 Score=36.12 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.|.+||+|++||+.++......+
T Consensus 59 gL~~GD~I~~vng~~v~~~~~~~ 81 (103)
T 1n7t_A 59 LLQPGDKIIQANGYSFINIEHGQ 81 (103)
T ss_dssp SCCTTCEEEEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 68899999999999987654433
No 177
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.65 E-value=10 Score=28.82 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=25.4
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--------cccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--------HPKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--------~~~C~~C~~~I~~ 185 (476)
+.|..|...+.... ...=|+.||..|....+ ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45666655554432 23456677887765422 3467777776654
No 178
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=41.54 E-value=1.2 Score=35.59 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.7
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
|++||+|++||+.++......+
T Consensus 49 l~~GD~I~~vng~~v~~~~~~~ 70 (97)
T 1n7e_A 49 IHIGDRILAINSSSLKGKPLSE 70 (97)
T ss_dssp CCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987544333
No 179
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=41.43 E-value=9.2 Score=33.70 Aligned_cols=44 Identities=11% Similarity=0.388 Sum_probs=25.4
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIP 184 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~ 184 (476)
+.|..|...+.+......-|+.||..|....+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 56666666665532222467788888865543 234666665553
No 180
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=41.39 E-value=38 Score=38.21 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=30.8
Q ss_pred hhhhhhccchhhhhhh-cCCCCC-CcchhhhHHHHHHHHHHhhh
Q 011854 357 TGTILAHEMMHGWMRL-QGFRTL-SPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 357 ~g~ilaHe~~Ha~l~~-~g~~~l-~~~~eEG~cq~~a~~wl~~~ 398 (476)
...+||||++|-|..- -....- ...+-|||..+++++|++..
T Consensus 316 ~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~~~~ 359 (909)
T 4fke_A 316 VVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADHA 359 (909)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHHHHHhc
Confidence 3468999999999742 112222 36789999999999998754
No 181
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=41.20 E-value=1.2 Score=36.47 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=18.3
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
|++||+|++||+.++......++
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 58 LKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp SCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999976544443
No 182
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=41.09 E-value=17 Score=26.58 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCceeeccCCccccccccccc--ccccccccCCcccC
Q 011854 142 CCHACHQPITDIEFSTSENRPYHKSCYREH--YHPKCDVCKHFIPS 185 (476)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~--f~~~C~~C~~~I~~ 185 (476)
.|..|...+.+......=|..||..|..+. ....|..|...+..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 455555555443233345666777776442 23578888877764
No 183
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=41.02 E-value=1.2 Score=36.63 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=18.9
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+|++||+|++||+.++......++
T Consensus 56 ~l~~GD~I~~vng~~v~~~~~~~~ 79 (111)
T 2dlu_A 56 RLQTGDHILKIGGTNVQGMTSEQV 79 (111)
T ss_dssp CCCSSCEEEEESSCCCTTSCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999986544443
No 184
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=40.71 E-value=6.8 Score=42.19 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred hhhhccchhhhhhhc-CCCCC-CcchhhhHHHHHHHHHHhh
Q 011854 359 TILAHEMMHGWMRLQ-GFRTL-SPDVEEGICQVIAHWWLIS 397 (476)
Q Consensus 359 ~ilaHe~~Ha~l~~~-g~~~l-~~~~eEG~cq~~a~~wl~~ 397 (476)
.+||||++|-|..-- ....- ...+-|||...++++|++.
T Consensus 289 ~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~ 329 (608)
T 3u9w_A 289 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGR 329 (608)
T ss_dssp HHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHH
Confidence 489999999996421 11212 3678999999999998864
No 185
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=40.44 E-value=1.3 Score=35.06 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=18.3
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
++.+||+|++||+.++......+
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~~ 69 (92)
T 2qg1_A 47 RLMQGDQILMVNGEDVRNATQEA 69 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 38899999999999997654433
No 186
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=40.41 E-value=3 Score=34.14 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=20.1
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
+|.+||+|++||+.++......++..
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~ 87 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVE 87 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 48899999999999997655544433
No 187
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=40.36 E-value=1.5 Score=36.39 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=21.3
Q ss_pred ccCCCCCccccccccccccccccceEEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
..|.+||+|++||+.++......++..+
T Consensus 60 agL~~GD~I~~ing~~v~~~~~~~~~~~ 87 (114)
T 1uew_A 60 AKLKVGDRILAVNGQSIINMPHADIVKL 87 (114)
T ss_dssp SSCCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4678999999999999987655554443
No 188
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=40.20 E-value=1.4 Score=36.44 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+|++||+|++||+.++......++
T Consensus 61 ~L~~GD~I~~vng~~v~~~~~~~~ 84 (116)
T 2dm8_A 61 RLWAGDQILEVNGVDLRNSSHEEA 84 (116)
T ss_dssp CCCTTCEEEEETTEECSSSCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999876544443
No 189
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=40.09 E-value=1.3 Score=35.42 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.2
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+.+||+|++||+.++......+
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~ 77 (98)
T 1ihj_A 56 LKVGDRILSLNGKDVRNSTEQA 77 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999997764433
No 190
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=40.06 E-value=2.8 Score=34.23 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=20.8
Q ss_pred ccCCCCCccccccccccccccccceEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
--+++||+|++||+.++......++..
T Consensus 51 aGL~~GD~Il~vng~~v~~~~~~~l~~ 77 (94)
T 3kzd_A 51 KGLKAGDEILEINNRAADALNSSMLKD 77 (94)
T ss_dssp TTCCTTCEEEEETTEEGGGCCHHHHHH
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 357899999999999998765544433
No 191
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.05 E-value=1.6 Score=36.99 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=20.3
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
-|.+||+|++||+.++......++..+
T Consensus 78 GL~~GD~I~~ing~~v~~~~~~~~~~~ 104 (126)
T 2yuy_A 78 GLCTGDRIIKVNGESVIGKTYSQVIAL 104 (126)
T ss_dssp TCCSSCCCCEETTEECSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 378999999999999975555554433
No 192
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=39.92 E-value=1.5 Score=35.94 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=16.7
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
+|.+||+|++||+.++....
T Consensus 54 ~L~~GD~I~~vng~~v~~~~ 73 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLG 73 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 38899999999999987543
No 193
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=39.72 E-value=11 Score=35.91 Aligned_cols=51 Identities=24% Similarity=0.708 Sum_probs=31.4
Q ss_pred CCCCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccc----ccccccccCCccc
Q 011854 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREH----YHPKCDVCKHFIP 184 (476)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~----f~~~C~~C~~~I~ 184 (476)
+......|..|.+.|.. ..+|..|+. .++..|+.+. -.+.|..|+...+
T Consensus 176 ~~~~i~~C~iC~~iv~~--------------g~~C~~C~~-------------~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 176 YPDAVKICNICHSLLIQ--------------GQSCETCGI-------------RMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CTTTCCBCTTTCSBCSS--------------CEECSSSCC-------------EECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred cCCCCCcCcchhhHHhC--------------CcccCccCh-------------HHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 44467889999998853 245555542 2233333222 2468999998877
Q ss_pred CC
Q 011854 185 SN 186 (476)
Q Consensus 185 ~~ 186 (476)
..
T Consensus 229 ~~ 230 (238)
T 3nw0_A 229 HE 230 (238)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 194
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=39.68 E-value=14 Score=34.71 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.7
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccC
Q 011854 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (476)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~ 185 (476)
+.-|.|..|...+.+.- ....|..||+.|-...+ +..|..|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45688888888777643 34578999999864432 3348888888764
No 195
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=39.65 E-value=46 Score=37.47 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=31.2
Q ss_pred hhhhhhccchhhhhhh-cCCC-CCCcchhhhHHHHHHHHHHhhh
Q 011854 357 TGTILAHEMMHGWMRL-QGFR-TLSPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 357 ~g~ilaHe~~Ha~l~~-~g~~-~l~~~~eEG~cq~~a~~wl~~~ 398 (476)
...+||||++|-|..- -... --...+-|||...++++|++..
T Consensus 302 ~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 345 (897)
T 2xdt_A 302 ITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345 (897)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHh
Confidence 3569999999999742 1111 1236889999999999998854
No 196
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.30 E-value=14 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=12.9
Q ss_pred CCCCCcccccCCcccc
Q 011854 109 FPEGYRICAGCNNEIG 124 (476)
Q Consensus 109 ~~~~~~~C~~C~~~I~ 124 (476)
+......|+-|...|.
T Consensus 11 y~~~i~~C~IC~~~i~ 26 (74)
T 2ct0_A 11 YPDAVKICNICHSLLI 26 (74)
T ss_dssp CSSSSCBCSSSCCBCS
T ss_pred ccCCCCcCcchhhHcc
Confidence 4567788999999885
No 197
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=39.11 E-value=1.3 Score=35.30 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=18.6
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.|.+||+|++||+.++......+
T Consensus 51 gL~~GD~I~~vng~~v~~~~~~~ 73 (95)
T 1mfg_A 51 LLQPGDKIIQANGYSFINIEHGQ 73 (95)
T ss_dssp TCCTTCEEEEETTEECTTCBHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHH
Confidence 68899999999999987654433
No 198
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=38.81 E-value=1.5 Score=33.99 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=18.8
Q ss_pred ccCCCCCccccccccccccccccc
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
..+.+||+|++||+.++......+
T Consensus 41 aGl~~GD~I~~vng~~v~~~~~~~ 64 (85)
T 1rgw_A 41 SQLSQGDLVVAIDGVNTDTMTHLE 64 (85)
T ss_dssp SSCCCCSBEEEETTEECTTCCHHH
T ss_pred cCCCCCCEEEEECCEECCCcCHHH
Confidence 357899999999999987654333
No 199
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=38.51 E-value=1.7 Score=37.37 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=20.1
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
-|++||+|++||+.++......++..
T Consensus 82 GL~~GD~Il~Vng~~v~~~~~~~~~~ 107 (132)
T 3l4f_D 82 GLRMGDFLIEVNGQNVVKVGHRQVVN 107 (132)
T ss_dssp TCCTTCEEEEESSSBCTTSCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 48899999999999998655544433
No 200
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=38.35 E-value=13 Score=28.09 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=14.6
Q ss_pred CCcccccccccccc---------cccccccCCcccC
Q 011854 159 ENRPYHKSCYREHY---------HPKCDVCKHFIPS 185 (476)
Q Consensus 159 dg~~YCk~cY~~~f---------~~~C~~C~~~I~~ 185 (476)
=|..||..|..+.+ ...|..|...+..
T Consensus 30 CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 30 CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45566666654422 3356666665543
No 201
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=38.30 E-value=50 Score=37.63 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=31.2
Q ss_pred Hhhhhhhccchhhhhhh-cCCCC-CCcchhhhHHHHHHHHHHhhh
Q 011854 356 LTGTILAHEMMHGWMRL-QGFRT-LSPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 356 l~g~ilaHe~~Ha~l~~-~g~~~-l~~~~eEG~cq~~a~~wl~~~ 398 (476)
....+||||++|-|..- -.... -+..+-|||..+++++|++..
T Consensus 363 ~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~ 407 (967)
T 3se6_A 363 WVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNAT 407 (967)
T ss_dssp HHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHh
Confidence 34569999999999742 11111 136889999999999998753
No 202
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=38.30 E-value=1.5 Score=37.35 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=20.4
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
+|++||+|++||+.++......++..+
T Consensus 61 ~L~~GD~Il~vng~~v~~~~~~~~~~~ 87 (129)
T 2kpk_A 61 KMETGDVIVSVNDTCVLGHTHAQVVKI 87 (129)
T ss_dssp SCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999986555454333
No 203
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.90 E-value=9.9 Score=28.17 Aligned_cols=44 Identities=16% Similarity=0.444 Sum_probs=26.2
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccCC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~~~ 186 (476)
+.|..|...+.. ....=|..||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 445555555544 333456667777765432 36788888777653
No 204
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=44.06 E-value=6.8 Score=33.61 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=18.2
Q ss_pred CCccccchHHHHHHHhhhhhhhh
Q 011854 39 LPLEQENEDIDRAIALSLLEENQ 61 (476)
Q Consensus 39 ~~~~~~~e~~~~a~~~sl~e~~~ 61 (476)
|.+-++++||-+|||+||.|-.+
T Consensus 90 dlt~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 90 DLTHDNKDDLQAAIALSLLESPK 112 (129)
Confidence 34445799999999999987665
No 205
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=37.62 E-value=1.5 Score=34.37 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=18.3
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
-+.+||+|++||+.++......+
T Consensus 44 Gl~~GD~I~~ing~~v~~~~~~~ 66 (88)
T 2uzc_A 44 NVRIGDVVLSIDGINAQGMTHLE 66 (88)
T ss_dssp TCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 37899999999999987764333
No 206
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.59 E-value=7 Score=32.31 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=17.2
Q ss_pred EEEecCchhHH----hhhhhhccchhhhh
Q 011854 346 ILILYGLPRLL----TGTILAHEMMHGWM 370 (476)
Q Consensus 346 il~l~glp~~l----~g~ilaHe~~Ha~l 370 (476)
|++-+||-..| ..++||||+.|.-.
T Consensus 68 i~v~~gLl~~l~~~El~aVlaHElgH~~~ 96 (107)
T 3cqb_A 68 VAVSTGLLHNMTRDEAEAVLAHEVSHIAN 96 (107)
T ss_dssp EEEEHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred EEEcHHHHhhCCHHHHHHHHHHHHHHHHC
Confidence 45555555544 37899999999654
No 207
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.57 E-value=17 Score=27.87 Aligned_cols=33 Identities=30% Similarity=0.818 Sum_probs=23.6
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccCCCCCCCCCceeeccCCccccccccccc
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREH 171 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~ 171 (476)
...+-|--|++.-. ++|..| |+.+||..||++.
T Consensus 6 ee~pWC~ICneDAt----------------lrC~gC------------dgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----------------LRCAGC------------DGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC----------------EEETTT------------TSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe----------------EEecCC------------CCceehHHHHHHH
Confidence 34566777776431 677777 6789999999875
No 208
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=37.53 E-value=1.6 Score=34.95 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=16.6
Q ss_pred CCCCCcccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~ 339 (476)
+.+||+|++||+.++....
T Consensus 49 l~~GD~I~~vng~~v~~~~ 67 (98)
T 2opg_A 49 LWAGDQILEVNGIDLRKAT 67 (98)
T ss_dssp CCTTCEEEEETTEECTTCC
T ss_pred CCCCCEEEEECCEECCCCC
Confidence 8899999999999987654
No 209
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.50 E-value=1.5 Score=35.64 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=19.2
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-|.+||+|++||+.++......++
T Consensus 58 GL~~GD~I~~ing~~v~~~~~~~~ 81 (104)
T 1wi2_A 58 GLQEGDQVLAVNDVDFQDIEHSKA 81 (104)
T ss_dssp TCCTTCEEEEETTEECSSCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 478999999999999987555444
No 210
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.49 E-value=17 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=17.7
Q ss_pred CCccccccccccc--ccccccccCCcccC
Q 011854 159 ENRPYHKSCYREH--YHPKCDVCKHFIPS 185 (476)
Q Consensus 159 dg~~YCk~cY~~~--f~~~C~~C~~~I~~ 185 (476)
=|..||..|..+. ....|..|...|..
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 33 CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4566777776442 23578888887764
No 211
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=37.33 E-value=1.6 Score=36.09 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.8
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
|++||+|++||+.++......+
T Consensus 68 L~~GD~Il~Vng~~v~~~~~~~ 89 (112)
T 2r4h_A 68 MRIGDEILEINGETTKNMKHSR 89 (112)
T ss_dssp CCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987654333
No 212
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=37.21 E-value=1.3 Score=35.75 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=17.8
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+++||+|++||+.++......+
T Consensus 54 l~~GD~I~~vng~~v~~~~~~~ 75 (104)
T 3i4w_A 54 LRKGDQILSVNGVDLRNASHEQ 75 (104)
T ss_dssp CCTTEEEEEETTEECTTCCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999987554433
No 213
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=37.11 E-value=7.1 Score=39.66 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=0.0
Q ss_pred ccCCCCCccccccccccccccccceEEEEEecCchhHH
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp~~l 356 (476)
..+++||+|++||+.++......++..+|...+-...|
T Consensus 331 aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L 368 (388)
T 3suz_A 331 GGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHM 368 (388)
T ss_dssp --------------------------------------
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 34889999999999999887778877777666655544
No 214
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=37.04 E-value=1.6 Score=34.96 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=20.0
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
-|.+||+|++||+.++......++..
T Consensus 54 GL~~GD~I~~ing~~v~~~~~~~~~~ 79 (96)
T 2ego_A 54 GLTPGDTIASVNGLNVEGIRHREIVD 79 (96)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 37899999999999998764444433
No 215
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=37.01 E-value=8.1 Score=31.63 Aligned_cols=23 Identities=4% Similarity=-0.060 Sum_probs=18.5
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+|++||+|++||++++......+
T Consensus 43 ~L~~GD~Il~Ing~~v~~~~~~~ 65 (106)
T 2la8_A 43 KLQRGDIITKFNGDALEGLPFQV 65 (106)
T ss_dssp TCCTTCEEEEESSCBCSSSCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 48899999999999997654443
No 216
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=36.93 E-value=1.3 Score=35.28 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=18.7
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-+.+||.|++||+.++......++
T Consensus 47 Gl~~GD~I~~ing~~v~~~~~~~~ 70 (96)
T 2v90_A 47 GMQAGDRLVAVAGESVEGLGHEET 70 (96)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999877544443
No 217
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.86 E-value=1.7 Score=34.87 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.1
Q ss_pred ccCCCCCccccccccccccccc
Q 011854 319 PRFGPGNQARNIITEPYKLTRR 340 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~ 340 (476)
-.|.+||+|++||+.++.....
T Consensus 46 agL~~GD~Il~ing~~v~~~~~ 67 (96)
T 2edv_A 46 GKLFPGDQILQMNNEPAEDLSW 67 (96)
T ss_dssp TTSCTTCBEEEESSCBSTTCCH
T ss_pred hCCCCCCEEEEECCEECCCCCH
Confidence 4578999999999999976543
No 218
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=36.76 E-value=1.3 Score=34.93 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=18.6
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.+.+||+|++||+.++......+
T Consensus 48 gl~~GD~I~~ing~~v~~~~~~~ 70 (90)
T 1qav_A 48 ALFVGDAILSVNGEDLSSATHDE 70 (90)
T ss_dssp CCCTTEEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 57899999999999997654443
No 219
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=36.74 E-value=12 Score=30.08 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=26.2
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--c-ccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--H-PKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~-~~C~~C~~~I~~ 185 (476)
+.|..|...+........=|..||..|....+ . ..|..|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45666666555432214457778888865432 1 467777776654
No 220
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=36.58 E-value=3.8 Score=34.75 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=19.8
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
+|++||+|++||+.++....+.++.
T Consensus 73 ~L~~GD~Il~Vng~~v~~~~~~~~~ 97 (127)
T 1wg6_A 73 RLRMNDQLIAVNGETLLGKSNHEAM 97 (127)
T ss_dssp TSCSCCBEEEETTEESTTSCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 4889999999999998776554443
No 221
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=36.36 E-value=11 Score=27.90 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=22.2
Q ss_pred ccCCCCCCCCCceeeccCCcccc-cccccc
Q 011854 142 CCHACHQPITDIEFSTSENRPYH-KSCYRE 170 (476)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~YC-k~cY~~ 170 (476)
.|..|+..++...-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 47788888877666778999999 677654
No 222
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=36.29 E-value=1.8 Score=36.51 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=20.1
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
+|++||+|++||+.++......++..+
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~ 88 (123)
T 1ueq_A 62 KMETGDVIVYINEVCVLGHTHADVVKL 88 (123)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999876544444333
No 223
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=36.17 E-value=1.7 Score=34.63 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=18.4
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.+.+||.|++||+.++......+
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~ 69 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAE 69 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 47899999999999997754333
No 224
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.84 E-value=13 Score=28.41 Aligned_cols=43 Identities=28% Similarity=0.664 Sum_probs=25.8
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIP 184 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~ 184 (476)
+.|..|...+.+. ....-|..||..|..+.+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4555555555442 223456778888865432 357888888775
No 225
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=35.81 E-value=2 Score=36.44 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=19.7
Q ss_pred CCCCCccccccccccccccccceEE
Q 011854 321 FGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
|.+||+|++||+.++......++..
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~ 102 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVE 102 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHH
Confidence 8899999999999998755544433
No 226
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=35.69 E-value=1.7 Score=35.32 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=20.5
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
-|++||+|++||+.++......++..+
T Consensus 60 Gl~~GD~I~~ing~~v~~~~~~~~~~~ 86 (107)
T 3qe1_A 60 GVRKGDRILEVNGVNVEGATHKQVVDL 86 (107)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 478999999999999986555554433
No 227
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=35.59 E-value=3 Score=32.91 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=19.6
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
-|.+||+|++||+.++....+.++.
T Consensus 46 Gl~~GD~I~~ing~~v~~~~~~~~~ 70 (95)
T 3r68_A 46 GLKNNDLVVAVNGKSVEALDHDGVV 70 (95)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 4789999999999998876544443
No 228
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=35.25 E-value=1.4 Score=35.99 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=17.8
Q ss_pred CCCCCccccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~e 342 (476)
|++||+|++||+.++......+
T Consensus 63 l~~GD~I~~vng~~v~~~~~~~ 84 (108)
T 2jre_A 63 IEPNDKILRVDDVNVQGMAQSD 84 (108)
T ss_dssp CCSSEEEEEETTEECTTSCHHH
T ss_pred CCCCCEEEEECCEECCCCCHHH
Confidence 8899999999999997654333
No 229
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=34.95 E-value=20 Score=29.21 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=32.5
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccC
Q 011854 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPS 185 (476)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~~ 185 (476)
+.-|.|..|...+.+--. ...|..||+.|-...+ ...|..|++++..
T Consensus 27 p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 566888888888877533 3488899998843322 4577777777664
No 230
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=34.81 E-value=2 Score=36.54 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=20.1
Q ss_pred CCCCCccccccccccccccccceEEE
Q 011854 321 FGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
|++||+|++||+.++......++..+
T Consensus 84 L~~GD~Il~vng~~v~~~~~~~~~~~ 109 (128)
T 1nf3_C 84 LAVNDEVLEVNGIEVSGKSLDQVTDM 109 (128)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78999999999999976655554433
No 231
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.58 E-value=16 Score=28.12 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=18.1
Q ss_pred cCCcccccccccccc-----cccccccCCcccC
Q 011854 158 SENRPYHKSCYREHY-----HPKCDVCKHFIPS 185 (476)
Q Consensus 158 ~dg~~YCk~cY~~~f-----~~~C~~C~~~I~~ 185 (476)
.=|..||..|..+.+ ...|..|...+..
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 346677887765542 2568888877654
No 232
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=34.57 E-value=1.2 Score=36.35 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=22.0
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.|.+||+|++||+.++......++..+|
T Consensus 53 gL~~GD~Il~Ing~~v~~~~~~~~~~~l 80 (103)
T 2dc2_A 53 GLHVGDAILAVNGVNLRDTKHKEAVTIL 80 (103)
T ss_dssp CCCSSEEEEEETTEESTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 6889999999999999876665554443
No 233
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=34.54 E-value=1.9 Score=39.23 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=21.1
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
++++||+|++||++++......++..++
T Consensus 154 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l 181 (206)
T 3r0h_A 154 KLQRGDIITKFNGDALEGLPFQVCYALF 181 (206)
T ss_dssp HCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3889999999999999876554443333
No 234
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=34.33 E-value=10 Score=31.35 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.1
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+|++||+|++||+.++......+
T Consensus 60 ~L~~GD~Il~ing~~v~~~~~~~ 82 (119)
T 1x6d_A 60 TIQKGNEVLSINGKSLKGTTHHD 82 (119)
T ss_dssp SSCTTCBCCEETTEECSSCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 38899999999999987544433
No 235
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=34.32 E-value=19 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.504 Sum_probs=14.8
Q ss_pred CCccccccccccc--ccccccccCCcccC
Q 011854 159 ENRPYHKSCYREH--YHPKCDVCKHFIPS 185 (476)
Q Consensus 159 dg~~YCk~cY~~~--f~~~C~~C~~~I~~ 185 (476)
-|+.||..|.... ....|..|...|..
T Consensus 71 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 71 CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3556666664332 23457777666643
No 236
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=34.02 E-value=1.9 Score=35.26 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=19.6
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
-|++||+|++||+.++....+.++.
T Consensus 62 Gl~~GD~I~~vng~~v~~~~~~~~~ 86 (109)
T 1q3o_A 62 GLRMGDFLIEVNGQNVVKVGHRQVV 86 (109)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHH
Confidence 4789999999999999876544443
No 237
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=33.96 E-value=20 Score=29.00 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=30.7
Q ss_pred CCCcccCCCCCCCCCceeeccCC-cccccccccccc--cccccccCCcccC
Q 011854 138 PECFCCHACHQPITDIEFSTSEN-RPYHKSCYREHY--HPKCDVCKHFIPS 185 (476)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg-~~YCk~cY~~~f--~~~C~~C~~~I~~ 185 (476)
+.-|.|..|...+.+--. ...| ..||+.|-.+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456888888887776433 3466 889988854322 3467777766654
No 238
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=33.91 E-value=4.1 Score=32.72 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=18.9
Q ss_pred CCCCCccccccccccccccccceE
Q 011854 321 FGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
|.+||.|++||+.++......++.
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~ 81 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAV 81 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHH
Confidence 789999999999999775444443
No 239
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=33.89 E-value=11 Score=29.55 Aligned_cols=42 Identities=21% Similarity=0.509 Sum_probs=23.9
Q ss_pred cccCCCCCCCCCceeecc-CCcccccccccccc----cccccccCCcc
Q 011854 141 FCCHACHQPITDIEFSTS-ENRPYHKSCYREHY----HPKCDVCKHFI 183 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~-dg~~YCk~cY~~~f----~~~C~~C~~~I 183 (476)
|.|..|...+.+. .... =|+.||..|....+ ...|..|...+
T Consensus 14 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 5666666655543 2233 37778888865432 13566666554
No 240
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.82 E-value=2 Score=35.03 Aligned_cols=23 Identities=0% Similarity=-0.100 Sum_probs=18.6
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.|++||+|++||+.++......+
T Consensus 59 gL~~GD~Il~vng~~v~~~~~~~ 81 (107)
T 1uhp_A 59 GLQIHDRIIEVNGRDLSRATHDQ 81 (107)
T ss_dssp CCCSSCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 68899999999999997654443
No 241
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=33.69 E-value=8 Score=30.76 Aligned_cols=23 Identities=4% Similarity=-0.060 Sum_probs=18.3
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
+|++||+|++||+.++......+
T Consensus 49 ~L~~GD~I~~Ing~~v~~~~~~~ 71 (96)
T 2qkv_A 49 KLQRGDIITKFNGDALEGLPFQV 71 (96)
T ss_dssp HCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 38899999999999997654433
No 242
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.67 E-value=1.9 Score=34.28 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.0
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-|.+||+|++||+.++....
T Consensus 49 Gl~~GD~I~~ing~~v~~~~ 68 (94)
T 2eeg_A 49 ALCPGDLIQAINGESTELMT 68 (94)
T ss_dssp TCCTTCEEEEETTEETTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987653
No 243
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=33.58 E-value=3 Score=35.77 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=20.1
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
+|.+||+|++||+.++......++..+|
T Consensus 67 ~L~~GD~Il~VnG~~v~~~s~~d~~~~l 94 (126)
T 1wif_A 67 ILQPGDVLISVGHANVLGYTLREFLKLL 94 (126)
T ss_dssp SSCTTCBEEEESSSCCTTCCHHHHHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence 3789999999999999644444444433
No 244
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=33.42 E-value=15 Score=30.71 Aligned_cols=28 Identities=14% Similarity=0.333 Sum_probs=17.6
Q ss_pred cCCcccccccccccc---cccccccCCcccC
Q 011854 158 SENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (476)
Q Consensus 158 ~dg~~YCk~cY~~~f---~~~C~~C~~~I~~ 185 (476)
.-|+.||..|....+ ...|..|...|..
T Consensus 69 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346667887765433 2377788777754
No 245
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=33.20 E-value=16 Score=33.41 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=18.7
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|+..++..-+.+..|+|||++|..
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 123 VGVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEEecCCCchhHHHHHHHHHHhhhc
Confidence 46666666544456889999999964
No 246
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=33.07 E-value=36 Score=30.07 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCCCChh--hHHHHHHHHHHhCHHHHHHHHHhhCC
Q 011854 441 ASPVYGD--GFRAGQHAVQKYGLGRTLDHIRRTGR 473 (476)
Q Consensus 441 ~s~~yG~--Gfr~~~~~~~~~gl~~~l~~~~~~g~ 473 (476)
+||.||+ +||.+++.+++ ++..+|+.|+..+.
T Consensus 126 ~DPy~~~~~~f~~~~~~I~~-~~~~ll~~l~~~~~ 159 (161)
T 3jvi_A 126 PDPYYGGEKGFHRVIDILED-ACENLIIKLEEGKL 159 (161)
T ss_dssp CCCC--CHHHHHHHHHHHHH-HHHHHHHHHHHSSC
T ss_pred cCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 5788887 99999998876 57888888876543
No 247
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=32.92 E-value=1.9 Score=34.11 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=16.8
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
++.+||+|++||+.++....
T Consensus 51 ~l~~GD~I~~vng~~v~~~~ 70 (97)
T 2iwn_A 51 RIQIGDQIIAVDGTNLQGFT 70 (97)
T ss_dssp CCCTTCEEEEETTEECTTSC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 38899999999999987543
No 248
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=32.89 E-value=15 Score=33.67 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=18.6
Q ss_pred EEEEecCchhHHhhhhhhccchhhh
Q 011854 345 AILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 345 ~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
+|....+.....++.|+|||++|-.
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~l 145 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHNL 145 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCChhHHHHHHHHHHHHHc
Confidence 5566666666667789999999953
No 249
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.83 E-value=4.5 Score=33.53 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.5
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
.|.+||+|++||+.++......++..
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~ 85 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVL 85 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 68899999999999998765555433
No 250
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=32.66 E-value=7.9 Score=35.94 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=9.8
Q ss_pred cCCcccccccccc
Q 011854 158 SENRPYHKSCYRE 170 (476)
Q Consensus 158 ~dg~~YCk~cY~~ 170 (476)
.+|+++|..|+.+
T Consensus 190 ~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 190 LNGKPVCKPDYYG 202 (204)
T ss_dssp ETTEEECHHHHHC
T ss_pred eCCcEEChhhhcc
Confidence 4778888888754
No 251
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.66 E-value=5 Score=33.59 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=18.8
Q ss_pred ccCCCCCccccccccccccccccc
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.-|++||+|++||+.+++.....+
T Consensus 60 aGL~~GD~Il~Ing~~v~~~~~~~ 83 (114)
T 2d8i_A 60 KGLKAGDEILEINNRAADALNSSM 83 (114)
T ss_dssp HTCCTTCCEEEESSCBGGGCCHHH
T ss_pred cCCCCCCEEEEECCEECCCcCHHH
Confidence 347899999999999998754333
No 252
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=32.47 E-value=4.2 Score=31.63 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=19.0
Q ss_pred ccCCCCCccccccccccccccccce
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
..+.+||+|++||+.++......++
T Consensus 42 aGL~~GD~I~~ing~~v~~~~~~~~ 66 (87)
T 2pa1_A 42 ADLRPGDIIVAINGESAEGMLHAEA 66 (87)
T ss_dssp TTCCTTCEEEEETTEESTTCCHHHH
T ss_pred cCCCCCCEEEEECCEECCCCCHHHH
Confidence 3478999999999999877544343
No 253
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.78 E-value=2.7 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=19.4
Q ss_pred cCCCCCccccccccccccccccceE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVT 344 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~ 344 (476)
-|++||+|++||+.++....+.++.
T Consensus 63 GL~~GD~Il~Vng~~v~~~~~~dl~ 87 (118)
T 2yub_A 63 AIHPGDRILEINGTPVRTLRVEEVE 87 (118)
T ss_dssp HCCTTCCEEEESSSBTTTSCHHHHH
T ss_pred CCCCCCEEEEECCEECCCcCHHHHH
Confidence 4789999999999999876434443
No 254
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.65 E-value=1.8 Score=35.21 Aligned_cols=24 Identities=8% Similarity=-0.027 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-|.+||+|++||+.++......++
T Consensus 49 Gl~~GD~I~~vng~~v~~~~~~~~ 72 (106)
T 2eei_A 49 GVLADDHLIEVNGENVEDASHEEV 72 (106)
T ss_dssp TCCSSEEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 478999999999999976544443
No 255
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=31.61 E-value=18 Score=32.97 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=17.8
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|...++..-+.+..|+|||++|.+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 123 IGIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeccCCcceeeEEEehhhhcccc
Confidence 35556655434456789999999964
No 256
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=31.58 E-value=10 Score=29.54 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=18.2
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
-+.+||+|++||+.++......+
T Consensus 44 GL~~GD~I~~ing~~v~~~~~~~ 66 (91)
T 1g9o_A 44 GLLAGDRLVEVNGENVEKETHQQ 66 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 37899999999999987654433
No 257
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=31.43 E-value=21 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=32.1
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccC
Q 011854 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPS 185 (476)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~~ 185 (476)
+.-|.|..|...+.+--. ...|..||+.|-.+.+ ...|..|++.+..
T Consensus 12 p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456888888888777533 3478899998854322 4577777776654
No 258
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=31.25 E-value=2.3 Score=34.53 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=19.9
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
-+.+||+|++||+.++......++..
T Consensus 43 Gl~~GD~I~~ing~~v~~~~~~~~~~ 68 (106)
T 3ngh_A 43 GLLDGDRVLRINGVFVDKEEHAQVVE 68 (106)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 47899999999999987765444433
No 259
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=31.17 E-value=2.2 Score=35.90 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=18.3
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
|++||+|++||+.++......++
T Consensus 64 L~~GD~I~~ing~~v~~~~~~~~ 86 (122)
T 1v5q_A 64 LQIGDRVMAINGIPTEDSTFEEA 86 (122)
T ss_dssp CCTTCCEEEETTEESSSSCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 78999999999999876444443
No 260
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=31.16 E-value=41 Score=27.26 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=10.6
Q ss_pred cccccccccCCcccC
Q 011854 171 HYHPKCDVCKHFIPS 185 (476)
Q Consensus 171 ~f~~~C~~C~~~I~~ 185 (476)
.-++.|+.|+.-|-.
T Consensus 14 ~~~qiCqiCGD~VG~ 28 (93)
T 1weo_A 14 LDGQFCEICGDQIGL 28 (93)
T ss_dssp CSSCBCSSSCCBCCB
T ss_pred cCCCccccccCcccc
Confidence 345788888887753
No 261
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=30.88 E-value=4.7 Score=32.09 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-+++||+|++||+.++......++
T Consensus 50 Gl~~GD~I~~ing~~v~~~~~~~~ 73 (98)
T 2jxo_A 50 GLRAQDRIVEVNGVCMEGKQHGDV 73 (98)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999876444443
No 262
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=30.87 E-value=11 Score=31.54 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.|.+||+|++||+.++......+
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~ 93 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQ 93 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 67899999999999988654444
No 263
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.75 E-value=35 Score=25.56 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=13.7
Q ss_pred ccccccccccc--ccccccccCCcccC
Q 011854 161 RPYHKSCYREH--YHPKCDVCKHFIPS 185 (476)
Q Consensus 161 ~~YCk~cY~~~--f~~~C~~C~~~I~~ 185 (476)
..||..|..+. ....|..|...|..
T Consensus 38 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 38 HLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34455554322 23467888777765
No 264
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.68 E-value=2.6 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.8
Q ss_pred cCCCCCccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLT 338 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~ 338 (476)
.|.+||+|++||+.++...
T Consensus 53 GL~~GD~I~~ing~~v~~~ 71 (100)
T 2edp_A 53 KMRTGDELVNINGTPLYGS 71 (100)
T ss_dssp SCCTTCEEEEETTEECCSC
T ss_pred CCCCCCEEEEECCEEccch
Confidence 6789999999999998764
No 265
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=30.61 E-value=2.6 Score=35.56 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+|.+||+|++||+.++......++
T Consensus 64 ~L~~GD~I~~vng~~v~~~~~~~~ 87 (129)
T 2dmz_A 64 HIQVNDKIVAVDGVNIQGFANHDV 87 (129)
T ss_dssp CCCSSCBEEEETTBCCTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 388999999999999887544443
No 266
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.51 E-value=2.6 Score=33.46 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=19.7
Q ss_pred cCCCCCccccccccccccccccceEEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAIL 347 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~il 347 (476)
.+++||+|++||+.++ .....++..+|
T Consensus 47 ~L~~GD~I~~ing~~v-~~~~~~~~~~l 73 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPV-GSDPRALQELL 73 (91)
T ss_dssp CCCTTCEEEEETTEEC-TTCHHHHHHHH
T ss_pred CCCCCCEEEEECCEEC-CCCHHHHHHHH
Confidence 4789999999999999 54444544433
No 267
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=30.42 E-value=5.4 Score=32.18 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=19.5
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
-|.+||+|++||+.++......++..
T Consensus 65 Gl~~GD~I~~vng~~v~~~~~~~~~~ 90 (104)
T 2z17_A 65 GLQAGDVLANINGVSTEGFTYKQVVD 90 (104)
T ss_dssp TCCTTCBCCEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHH
Confidence 37899999999999987554444433
No 268
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=30.41 E-value=29 Score=26.20 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=18.1
Q ss_pred CCcc-cccccccccccccccccCCcccC
Q 011854 159 ENRP-YHKSCYREHYHPKCDVCKHFIPS 185 (476)
Q Consensus 159 dg~~-YCk~cY~~~f~~~C~~C~~~I~~ 185 (476)
=|.. +|..|.... ..|..|...|..
T Consensus 42 CgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 42 CGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp TCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 4555 777776654 789999888865
No 269
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=30.18 E-value=24 Score=27.38 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=19.4
Q ss_pred CCcccccccccccc---cccccccCCcccCC
Q 011854 159 ENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (476)
Q Consensus 159 dg~~YCk~cY~~~f---~~~C~~C~~~I~~~ 186 (476)
-|..||..|+.... ...|..|.+.+...
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 56677888875543 45788888887753
No 270
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=30.08 E-value=2.5 Score=34.21 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=17.1
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-|++||+|++||+.++....
T Consensus 46 GL~~GD~I~~ing~~v~~~~ 65 (103)
T 1wf7_A 46 HVRIGDVVLSIDGISAQGMT 65 (103)
T ss_dssp TCCTTCBEEEETTEECSSCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987653
No 271
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=30.08 E-value=2.4 Score=33.87 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=18.7
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-|.+||+|++||+.++......++
T Consensus 51 Gl~~GD~I~~ing~~v~~~~~~~~ 74 (99)
T 3khf_A 51 GLRAGDLITHINGESVLGLVHMDV 74 (99)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 378999999999999875544443
No 272
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=30.07 E-value=11 Score=33.28 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=24.1
Q ss_pred CCCCChhhHHHHHHHHHHhCHHHHHHHHHhhC
Q 011854 441 ASPVYGDGFRAGQHAVQKYGLGRTLDHIRRTG 472 (476)
Q Consensus 441 ~s~~yG~Gfr~~~~~~~~~gl~~~l~~~~~~g 472 (476)
+||.||++||.+++.+++ ++..+|++|+.+.
T Consensus 123 ~DP~~~~~f~~v~~~I~~-~~~~ll~~l~~~~ 153 (156)
T 2gi4_A 123 PDPWYSGNFDETYKILSL-ACKNLLVFLSKHH 153 (156)
T ss_dssp CHHHHTSCSHHHHHHHHH-HHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 467888899999998875 4778888887653
No 273
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=30.04 E-value=2.3 Score=35.18 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=18.2
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
-+.+||+|++||+.++......+
T Consensus 55 GL~~GD~I~~ing~~v~~~~~~~ 77 (114)
T 2edz_A 55 GLLDGDRVLRINGVFVDKEEHAQ 77 (114)
T ss_dssp TCCTTCEEEEESSSBCSSSCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 47899999999999997753333
No 274
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=29.98 E-value=5.2 Score=33.49 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=18.2
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
|.+||+|++||+.++......++
T Consensus 77 L~~GD~Il~Ing~~v~~~~~~~~ 99 (121)
T 2kom_A 77 LKAGDRLIEVNGVDLVGKSQEEV 99 (121)
T ss_dssp CCSSSEEEEETTEECTTSCHHHH
T ss_pred CCCCCEEEEECCEEcCCCCHHHH
Confidence 78999999999999876443343
No 275
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=29.96 E-value=4.9 Score=31.60 Aligned_cols=20 Identities=5% Similarity=0.028 Sum_probs=16.7
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-+++||+|++||+.++....
T Consensus 41 Gl~~GD~I~~vng~~v~~~~ 60 (91)
T 2f5y_A 41 GLQQLDTVLQLNERPVEHWK 60 (91)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 37899999999999987543
No 276
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=29.95 E-value=5.3 Score=33.34 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.2
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
++.+||+|++||+.++......+
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~ 93 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEE 93 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 48899999999999987544433
No 277
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=29.86 E-value=13 Score=41.93 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=29.9
Q ss_pred hhhhhccchhhhhhhc-CCCCC-CcchhhhHHHHHHHHHHhhh
Q 011854 358 GTILAHEMMHGWMRLQ-GFRTL-SPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 358 g~ilaHe~~Ha~l~~~-g~~~l-~~~~eEG~cq~~a~~wl~~~ 398 (476)
..+||||+.|-|..-. ....- ...+-|||...+.++|++..
T Consensus 288 ~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 330 (867)
T 2gtq_A 288 ESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDR 330 (867)
T ss_dssp HHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHH
Confidence 4699999999996421 12222 36789999999998887654
No 278
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=29.85 E-value=24 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=17.2
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-+.+||.|++||+.++....
T Consensus 44 Gl~~GD~I~~ing~~v~~~~ 63 (91)
T 2pkt_A 44 NLCIGDVITAIDGENTSNMT 63 (91)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987655
No 279
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=29.60 E-value=21 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=17.7
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|...++-.-+.+..|+|||++|.+
T Consensus 120 ~gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 120 VGVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCchhHHHHHHHHHHhhhc
Confidence 45555554433456889999999964
No 280
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=29.56 E-value=2.3 Score=36.05 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=20.6
Q ss_pred ccCCCCCccccccccccccccccceEE
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
.-|++||+|++||+.++......++..
T Consensus 67 aGL~~GD~Il~Vng~~v~~~~~~~~~~ 93 (124)
T 3tsv_A 67 EGLEEGDQILRVNNVDFTNIIREEAVL 93 (124)
T ss_dssp TTCCTTEEEEEETTEECSSCCHHHHHH
T ss_pred cCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 348899999999999998765444433
No 281
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=29.51 E-value=12 Score=29.18 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=17.3
Q ss_pred CCCCCcccccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTRRC 341 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ 341 (476)
+.+||+|++||+.++......
T Consensus 52 l~~GD~I~~vng~~v~~~~~~ 72 (94)
T 2fe5_A 52 LQIGDRLLAVNNTNLQDVRHE 72 (94)
T ss_dssp CCTTCEEEEETTEECTTCBHH
T ss_pred CCCCCEEEEECCEECCCCCHH
Confidence 889999999999998765433
No 282
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=29.25 E-value=21 Score=32.34 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=17.9
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|...++..-+.+..|+|||++|.+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 122 VGLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred cceEeccCCcchHHHHHHHHHHHHhc
Confidence 35666665433446789999999954
No 283
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=28.90 E-value=21 Score=32.53 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=18.0
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|...++..-+.+..|+|||++|..
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 122 AGIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeecCCchhHHHHHHHHHHHHhc
Confidence 45666665433446889999999964
No 284
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=28.89 E-value=19 Score=31.53 Aligned_cols=44 Identities=20% Similarity=0.517 Sum_probs=24.1
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccccc---ccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYH---PKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~---~~C~~C~~~I~~ 185 (476)
+.|..|...+.+.. ...-|..||..|....+. ..|..|...|..
T Consensus 79 ~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 44555555444322 234566778887654332 367777776654
No 285
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=28.74 E-value=3.5 Score=40.01 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=28.8
Q ss_pred ccCCCCCccccccccccccccccceEEEEEecCchhHH
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDVTAILILYGLPRLL 356 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev~~il~l~glp~~l 356 (476)
..|.+||+|++|||.++......++..+|...|-+..|
T Consensus 120 aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L 157 (263)
T 1z87_A 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL 157 (263)
T ss_dssp TTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCE
T ss_pred CCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence 46889999999999999988777766555555555544
No 286
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=28.68 E-value=22 Score=32.49 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=17.9
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|...++..-+.+..|+|||++|.+
T Consensus 125 ~gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 125 VAVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eeEEecCCCcchhhHHHHHHHhhhhc
Confidence 35556655433456789999999964
No 287
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.40 E-value=5.6 Score=32.78 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=16.9
Q ss_pred CCCCccccccccccccccccc
Q 011854 322 GPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 322 ~~g~ri~e~~~~p~~~~~~~e 342 (476)
++||+|++||+.++......+
T Consensus 68 ~~GD~I~~vng~~v~~~~~~~ 88 (113)
T 1va8_A 68 HEGDEVLEINGIEIRGKDVNE 88 (113)
T ss_dssp CTTCEEEEETTEECTTCCHHH
T ss_pred CCCCEEEEECCEECCCCCHHH
Confidence 799999999999998544333
No 288
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=28.37 E-value=5.5 Score=30.05 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=16.1
Q ss_pred CCCCCcccccccccccccc
Q 011854 321 FGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~ 339 (476)
+.+||.|++||+.++....
T Consensus 40 l~~GD~I~~ing~~v~~~~ 58 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTENMS 58 (81)
T ss_dssp CCTTCEEEEETTEECTTCC
T ss_pred CCCCCEEEEECCEECCCCC
Confidence 7899999999999987433
No 289
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.26 E-value=15 Score=26.75 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=28.1
Q ss_pred cccCCCCC-CCCCce---eeccCCcccccccccccc---cccccccCCcccCC
Q 011854 141 FCCHACHQ-PITDIE---FSTSENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~-~L~~~~---f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~~ 186 (476)
+.|..|.. .+.+.. ....=|..||..|..+.+ ...|..|...+..+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45666655 332221 223567788888876542 35799999888764
No 290
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.21 E-value=33 Score=25.72 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=24.3
Q ss_pred CccCCCCcccCCCCceEEecCCcccchhhHhhhccCCCCCCcch
Q 011854 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLY 256 (476)
Q Consensus 213 F~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~~Cqp~~ 256 (476)
+.|..|...+........+.=+..||..|..+.+.....|--|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr 59 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcC
Confidence 45666665444444444455666777777766544444454443
No 291
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.56 E-value=5.7 Score=31.91 Aligned_cols=19 Identities=5% Similarity=-0.018 Sum_probs=16.4
Q ss_pred cCCCCCccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLT 338 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~ 338 (476)
-|.+||+|++||+.++...
T Consensus 53 GL~~GD~I~~vng~~v~~~ 71 (100)
T 1whd_A 53 GLQQLDTVLQLNERPVEHW 71 (100)
T ss_dssp TCCSSCEEEEETTEECTTC
T ss_pred CCCCCCEEEEECCEECCCC
Confidence 4789999999999998754
No 292
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=27.49 E-value=2.9 Score=37.99 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=21.0
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
-+++||+|++|||.++......++..+
T Consensus 127 GL~~GD~Il~vng~~v~~~~~~~~~~~ 153 (192)
T 3k1r_A 127 GLQVGDEIVRINGYSISSCTHEEVINL 153 (192)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999987655554443
No 293
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=26.99 E-value=13 Score=28.63 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=18.3
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
.+++||.|++||+.++......+
T Consensus 42 Gl~~GD~I~~vng~~v~~~~~~~ 64 (88)
T 3bpu_A 42 GLKEGDLIVEVNKKNVQALTHNQ 64 (88)
T ss_dssp TCCTTCEEEEETTEECTTSCHHH
T ss_pred CCCCCCEEEEECCEEcCCCCHHH
Confidence 57899999999999987654333
No 294
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=26.88 E-value=24 Score=32.06 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=31.4
Q ss_pred CCCcccCCCCCCCCCceeeccCCccccccccccc---ccccccccCCcccC
Q 011854 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREH---YHPKCDVCKHFIPS 185 (476)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~---f~~~C~~C~~~I~~ 185 (476)
+.-|.|..|...+.+. .....|..||+.|-... .+..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4457777777777664 33357889999885432 23468888887764
No 295
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=26.63 E-value=22 Score=36.49 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|+..++...+.+..|+|||++|.+
T Consensus 124 ~gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 124 TGIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCcchhhhhhHHHHHHHHc
Confidence 46667777656677889999999965
No 296
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=26.53 E-value=12 Score=32.39 Aligned_cols=43 Identities=21% Similarity=0.484 Sum_probs=31.1
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccccc---ccccccCCccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHYH---PKCDVCKHFIP 184 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f~---~~C~~C~~~I~ 184 (476)
|.|..|...+.+. ....-|..||..|..+... ..|..|...|.
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 6788888777654 3346788999999766433 47888888764
No 297
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=26.37 E-value=3.6 Score=34.06 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=16.9
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-|++||+|++||+.++....
T Consensus 59 GL~~GD~Il~vng~~v~~~~ 78 (117)
T 1uit_A 59 GLEYGDQLLEFNGINLRSAT 78 (117)
T ss_dssp TCCTTCEECEETTEETTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 37899999999999987654
No 298
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=26.15 E-value=21 Score=36.69 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|+..++--.+.+..|+|||++|.+
T Consensus 133 ~gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 133 AGIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCchhHHHHHHHHHHHHhc
Confidence 45666665545667889999999965
No 299
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=25.93 E-value=52 Score=23.79 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=27.0
Q ss_pred CcccccCCcccccCceEeecCccccCCCc--------ccCCCCCCCCC
Q 011854 113 YRICAGCNNEIGHGRFLNCLDVFWHPECF--------CCHACHQPITD 152 (476)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~algk~wH~~CF--------~C~~C~~~L~~ 152 (476)
...|.-|...+.....+..=+..||..|+ +|..|+.++..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45688888877433333334667888876 48888888765
No 300
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=25.87 E-value=15 Score=30.55 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.8
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
++.+||+|++||+.++....
T Consensus 63 ~L~~GD~Il~ing~~v~~~~ 82 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKT 82 (125)
T ss_dssp CCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 48899999999999987443
No 301
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=25.64 E-value=23 Score=36.51 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|+..++...+.+..|+|||++|.+
T Consensus 126 ~gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 126 VGIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCccceeeeehHHHHHHhh
Confidence 46666777555667889999999964
No 302
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.23 E-value=22 Score=29.14 Aligned_cols=44 Identities=18% Similarity=0.387 Sum_probs=30.2
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~ 185 (476)
+.|..|...+.+.. ...-|..||..|....+ ...|..|...|..
T Consensus 24 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 56777776665532 24577889998876533 4579999888775
No 303
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.20 E-value=34 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCcc-cccccccccccccccccCCcccC
Q 011854 159 ENRP-YHKSCYREHYHPKCDVCKHFIPS 185 (476)
Q Consensus 159 dg~~-YCk~cY~~~f~~~C~~C~~~I~~ 185 (476)
=|.. ||..|... ...|..|...|..
T Consensus 43 CgH~~~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 43 CGHLVTCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp SCCCCBCHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCHHHHHHHhhC--CCCCccCCceecC
Confidence 4555 77777754 3789999998875
No 304
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=25.18 E-value=7 Score=32.39 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=18.2
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-|.+||+|++||+.++......++
T Consensus 53 GL~~GD~Il~InG~~v~~~~~~d~ 76 (111)
T 1vae_A 53 GAKEGDYIVSIQGVDCKWLTVSEV 76 (111)
T ss_dssp HCCTTCEEEEETTEECSSCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 477999999999999874433343
No 305
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.13 E-value=28 Score=27.60 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=8.1
Q ss_pred CCccCCCCccc
Q 011854 212 TPRCCSCERME 222 (476)
Q Consensus 212 CF~C~~C~r~~ 222 (476)
-|.|..|++.+
T Consensus 80 ~~~C~~C~k~f 90 (115)
T 2dmi_A 80 VLKCMYCGHSF 90 (115)
T ss_dssp SCBCSSSCCBC
T ss_pred ceECCCCCCcc
Confidence 47888888754
No 306
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=25.12 E-value=23 Score=29.30 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=28.2
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~ 185 (476)
|.|..|...+... ....-|..||..|..+.+ ...|..|...|..
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 5666666665543 223467778888875532 2388888887765
No 307
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=24.64 E-value=17 Score=34.52 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEecCchhHH-----hhhhhhccchhhhhh
Q 011854 345 AILILYGLPRLL-----TGTILAHEMMHGWMR 371 (476)
Q Consensus 345 ~il~l~glp~~l-----~g~ilaHe~~Ha~l~ 371 (476)
.|++-.||-.++ ..+|||||+.|.-.+
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~ 114 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAVAR 114 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTT
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCc
Confidence 467777877666 378999999997654
No 308
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=24.41 E-value=69 Score=22.00 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=23.8
Q ss_pred CccCCCCcccCCCCceEEec-CCcccchhhHhhhccCCCCCCcc
Q 011854 213 PRCCSCERMEPQDTAYVALD-DGRKLCLECLDSAIMDTNECQPL 255 (476)
Q Consensus 213 F~C~~C~r~~~~g~~y~~l~-dg~~~C~~C~~~~v~d~~~Cqp~ 255 (476)
..|..|...+..++....+. =|..||..|..+.+.....|--|
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~C 49 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSS
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCC
Confidence 35666665554444444443 56677888877655444444333
No 309
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=24.21 E-value=24 Score=31.07 Aligned_cols=45 Identities=20% Similarity=0.450 Sum_probs=31.4
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccCC
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~f---~~~C~~C~~~I~~~ 186 (476)
|.|..|...+.+. ....-|..||..|..+.+ ..+|..|...|..+
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 6777777777654 334578888988876643 24899998887753
No 310
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.13 E-value=3.8 Score=33.48 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=16.9
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-|++||.|++||+.++....
T Consensus 63 GL~~GD~I~~ing~~v~~~~ 82 (110)
T 1x5q_A 63 GVRVGDKLLEVNGVALQGAE 82 (110)
T ss_dssp TCCTTCEEEEETTEECTTCC
T ss_pred CCCCCCEEEEECCEECCCcC
Confidence 37899999999999987643
No 311
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=24.01 E-value=4 Score=36.92 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.6
Q ss_pred cCCCCCccccccccccccccccceEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTA 345 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~ 345 (476)
++.+||+|++||+.++......++..
T Consensus 153 ~l~~GD~I~~ing~~v~~~~~~~~~~ 178 (200)
T 2qt5_A 153 TIKPGDRLLSVDGIRLLGTTHAEAMS 178 (200)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHH
Confidence 38899999999999998544444433
No 312
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=15 Score=26.76 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=16.3
Q ss_pred CCcccccccccccc--cccccccCCccc
Q 011854 159 ENRPYHKSCYREHY--HPKCDVCKHFIP 184 (476)
Q Consensus 159 dg~~YCk~cY~~~f--~~~C~~C~~~I~ 184 (476)
=|..||..|..+.+ ...|..|...|.
T Consensus 40 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 40 CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45667777765432 357888877664
No 313
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=23.99 E-value=13 Score=33.22 Aligned_cols=86 Identities=13% Similarity=0.342 Sum_probs=42.1
Q ss_pred ccccccccc--cccc--cccccCCcccCCCCcceEEcc---cCccccccCCCCccCCCCccCCCCcccCC----CCceEE
Q 011854 162 PYHKSCYRE--HYHP--KCDVCKHFIPSNHGGLIEYRA---HPFWVQKYCPSHEHDGTPRCCSCERMEPQ----DTAYVA 230 (476)
Q Consensus 162 ~YCk~cY~~--~f~~--~C~~C~~~I~~~~~g~i~~~~---hpfw~qkyC~~h~H~~CF~C~~C~r~~~~----g~~y~~ 230 (476)
-+|..|... .|.+ .|..|...+.+. .|.+.. ..++..+ .|..=+.|..|..-+-. +..+.
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~---~i~~~~~~~~V~F~H~-----~H~~~~~C~~CH~~v~~~~~~~~~~t- 126 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPA---KLTYKTSVGEAYFDHD-----IHLSMFKCADCHTKVFKYRKGSAPAT- 126 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCC---CEEEEETTEEEEECHH-----HHHTTCCGGGTBTTTBCSSTTSSCCC-
T ss_pred CchhhhcCCcccCChhhhchhhhhccccc---ceEeecCCCCccCChh-----HhCCCCChhhhccchhhcccCCCCcc-
Confidence 356666542 2333 688887654442 233321 1111111 25444889999864311 11221
Q ss_pred ec--CCcccchhhHhhhccCC--CCCCcch
Q 011854 231 LD--DGRKLCLECLDSAIMDT--NECQPLY 256 (476)
Q Consensus 231 l~--dg~~~C~~C~~~~v~d~--~~Cqp~~ 256 (476)
+. ..-.+|..|++-...++ ..|..|+
T Consensus 127 m~~~~~gk~Cg~CH~gk~Af~~~~~C~~CH 156 (158)
T 3oue_A 127 MADMEKGKSCGVCHNGKDAFSVADDCVKCH 156 (158)
T ss_dssp HHHHHTTCGGGGTBTTTSBCCSSSCGGGTE
T ss_pred hhhhhccChhHhhcCCCccCCCcccHHHHc
Confidence 11 11259999997433333 3677765
No 314
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=23.86 E-value=33 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=17.9
Q ss_pred eeccCCccccccccc------c--cccccccccCCcccC
Q 011854 155 FSTSENRPYHKSCYR------E--HYHPKCDVCKHFIPS 185 (476)
Q Consensus 155 f~~~dg~~YCk~cY~------~--~f~~~C~~C~~~I~~ 185 (476)
++..+|-+-|.+||. . ....+|..|+++++.
T Consensus 35 Wf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 35 WFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 334445555555552 2 245678888877776
No 315
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=23.68 E-value=4.5 Score=36.59 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=20.4
Q ss_pred cCCCCCccccccccccccccccceEEE
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDVTAI 346 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev~~i 346 (476)
++.+||+|++||+.++......++..+
T Consensus 153 ~l~~GD~I~~vng~~v~~~~~~~~~~~ 179 (196)
T 1p1d_A 153 TLELGDKLLAIDNIRLDSCSMEDAVQI 179 (196)
T ss_dssp CCCTTCEEEEETTEEGGGCCHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 388999999999999987544444333
No 316
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=23.56 E-value=8.1 Score=32.01 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=17.6
Q ss_pred CCCCCccccccccccccccccce
Q 011854 321 FGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
+.+||+|++||+.++......++
T Consensus 69 L~~GD~I~~Ing~~v~~~~~~~~ 91 (114)
T 2gzv_A 69 VAAGDEITGVNGRSIKGKTKVEV 91 (114)
T ss_dssp CCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHH
Confidence 88999999999999854443343
No 317
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=23.25 E-value=20 Score=40.53 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=29.9
Q ss_pred hhhhhhccchhhhhhhc-CCCCC-CcchhhhHHHHHHHHHHhhh
Q 011854 357 TGTILAHEMMHGWMRLQ-GFRTL-SPDVEEGICQVIAHWWLISQ 398 (476)
Q Consensus 357 ~g~ilaHe~~Ha~l~~~-g~~~l-~~~~eEG~cq~~a~~wl~~~ 398 (476)
...+||||+.|-|..-. ....- ...+-|||...+.++|++..
T Consensus 312 i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 355 (891)
T 3b34_A 312 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355 (891)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHH
Confidence 34799999999996310 11111 35689999999998888754
No 318
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.16 E-value=19 Score=28.67 Aligned_cols=23 Identities=0% Similarity=-0.093 Sum_probs=18.3
Q ss_pred cCCCCCccccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
-|.+||.|++||+.++......+
T Consensus 47 Gl~~GD~I~~ing~~v~~~~~~~ 69 (102)
T 2d90_A 47 GLKNNDLVVAVNGKSVEALDHDG 69 (102)
T ss_dssp TCCTTCEEEEESSCBCTTSCHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHH
Confidence 37899999999999998754333
No 319
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=23.10 E-value=8 Score=32.05 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=18.3
Q ss_pred ccCCCCCccccccccccccccccc
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCD 342 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~e 342 (476)
--+.+||+|++||+.++......+
T Consensus 60 AGL~~GD~Il~VnG~~v~~~~~~d 83 (109)
T 2vsv_A 60 AGAREGDYIVSIQLVDCKWLTLSE 83 (109)
T ss_dssp TTCCTTCEEEEETTEECTTCCHHH
T ss_pred cCCCCCCEEEEECCEECCCCCHHH
Confidence 347899999999999987543333
No 320
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=23.07 E-value=16 Score=26.18 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=27.5
Q ss_pred cccCCCCCCCCCc------eeeccCCcccccccccccc--cccccccCCcccCC
Q 011854 141 FCCHACHQPITDI------EFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (476)
Q Consensus 141 F~C~~C~~~L~~~------~f~~~dg~~YCk~cY~~~f--~~~C~~C~~~I~~~ 186 (476)
+.|..|...+... .....=|..||..|..+.+ ...|..|...+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4566665554321 1233456778888865432 45788888887753
No 321
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.87 E-value=18 Score=28.78 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=17.1
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-|.+||+|++||+.++....
T Consensus 53 GL~~GD~I~~ing~~v~~~~ 72 (100)
T 2eeh_A 53 GLCVGDKITEVNGLSLESTT 72 (100)
T ss_dssp TCCSSCEEEEETTEECSSCC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 37899999999999987754
No 322
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=22.72 E-value=27 Score=32.12 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=15.9
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|...+|+. ++.|+|||++|..
T Consensus 131 ~gi~~d~~~~---~a~~~AHElGHnl 153 (217)
T 3b8z_A 131 CAVIEDDGLH---AAFTVAHEIGHLL 153 (217)
T ss_dssp EEEEECCSSS---HHHHHHHHHHHHT
T ss_pred CceeccCCcc---hhhhhHhhhhhhc
Confidence 3455666653 4569999999953
No 323
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=22.69 E-value=46 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.4
Q ss_pred CCCCChh-hHHHHHHHHHHhCHHHHHHHHH
Q 011854 441 ASPVYGD-GFRAGQHAVQKYGLGRTLDHIR 469 (476)
Q Consensus 441 ~s~~yG~-Gfr~~~~~~~~~gl~~~l~~~~ 469 (476)
+||.||+ +||.+++.+++. +..+|+.|+
T Consensus 116 ~DP~~~~~~f~~~~~~I~~~-v~~ll~~l~ 144 (146)
T 1p8a_A 116 DDPYYSSDGFPTMFASISKE-MKPFLTEHG 144 (146)
T ss_dssp CCCSSSSSSHHHHHHHHHHT-THHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH-HHHHHHHHh
Confidence 5677874 899999888753 666666654
No 324
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=22.67 E-value=41 Score=26.47 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.7
Q ss_pred cCCCCCcccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKL 337 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~ 337 (476)
.+.+||.|++||+.++..
T Consensus 21 GL~~GD~Il~InG~~v~~ 38 (94)
T 2kl1_A 21 RLEAGDRIAAIDGQPINT 38 (94)
T ss_dssp TBCTTCEEEEETTBCCCC
T ss_pred CCCCCCEEEEECCEECCC
Confidence 488999999999999864
No 325
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.41 E-value=24 Score=25.35 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=16.2
Q ss_pred cccCCCCCCCCCceeeccCCccccccccccc
Q 011854 141 FCCHACHQPITDIEFSTSENRPYHKSCYREH 171 (476)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YCk~cY~~~ 171 (476)
+.|..|...+.+.. ...=|..||..|..+.
T Consensus 21 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 21 VICPICLDILQKPV-TIDCGHNFCLKCITQI 50 (63)
T ss_dssp CBCTTTCSBCSSCE-ECTTSSEECHHHHHHH
T ss_pred CCCCcCCchhCCeE-EeCCCCcchHHHHHHH
Confidence 45555555554422 2245667777776543
No 326
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.12 E-value=18 Score=33.43 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=21.4
Q ss_pred CccCCCCcccCCCCceEEecCCcccchhhHhh
Q 011854 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (476)
Q Consensus 213 F~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~ 244 (476)
..|..|+..... ....+.+|+.+|..|+..
T Consensus 173 ~~C~~CGE~~~~--~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYE--ADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEG--GGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhh--cceeeeCCcEEChhhhcc
Confidence 469999965432 223355899999999865
No 327
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=21.78 E-value=19 Score=28.58 Aligned_cols=24 Identities=4% Similarity=0.017 Sum_probs=18.8
Q ss_pred cCCCCCccccccccccccccccce
Q 011854 320 RFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
-+.+||.|++||+.++......++
T Consensus 62 Gl~~GD~I~~ing~~v~~~~~~~~ 85 (104)
T 3sfj_A 62 GLQIGDKIMQVNGWDMTMVTHDQA 85 (104)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHH
Confidence 488999999999999876554343
No 328
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=21.61 E-value=33 Score=27.32 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=27.4
Q ss_pred CCCcccccCCcccccCceEeecCccccCCCcccC
Q 011854 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCH 144 (476)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~algk~wH~~CF~C~ 144 (476)
...-.|.-|.+.+.+..+|.+-...-|.-||-|+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 3456788899988777888888888888888886
No 329
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=21.54 E-value=27 Score=26.90 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=15.4
Q ss_pred CCCCCcccccccccccc
Q 011854 321 FGPGNQARNIITEPYKL 337 (476)
Q Consensus 321 ~~~g~ri~e~~~~p~~~ 337 (476)
+++||.|++||+.++..
T Consensus 42 l~~GD~I~~ing~~v~~ 58 (92)
T 3cyy_A 42 IQEGDVVLKINGTVTEN 58 (92)
T ss_dssp CCTTCEEEEETTEECTT
T ss_pred CCCCCEEEEECCEECCC
Confidence 88999999999999873
No 330
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=21.09 E-value=31 Score=33.39 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=16.5
Q ss_pred EEEEEecCchhHHhhhhhhccchhhh
Q 011854 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (476)
Q Consensus 344 ~~il~l~glp~~l~g~ilaHe~~Ha~ 369 (476)
.+|+..+|+. +..|+|||++|.+
T Consensus 133 ~gi~~d~~~~---~a~t~AHElGHnl 155 (300)
T 2v4b_A 133 CSVIEDDGLQ---AAFTTAHELGHVF 155 (300)
T ss_dssp EEEEECSSTT---HHHHHHHHHHHHT
T ss_pred CceEcccCcc---ceehhhhhhhhhc
Confidence 4566667753 5669999999954
No 331
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.03 E-value=22 Score=27.20 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=25.7
Q ss_pred CccCCCCcccCCCCceEEecCCcccchhhHhhhccCCCCCCcchhhHHHHHHHhcccccccccceeeeh
Q 011854 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVER 281 (476)
Q Consensus 213 F~C~~C~r~~~~g~~y~~l~dg~~~C~~C~~~~v~d~~~Cqp~~~~I~~f~~gl~~~~~~~~Pv~LV~~ 281 (476)
..|-.|+..+ .|. ...|.++|..|- +.-||...||++|++-
T Consensus 11 L~CP~ck~~L----~~~-~~~g~LvC~~c~-----------------------~~YPI~dGIPvmL~~E 51 (67)
T 2jny_A 11 LACPKDKGPL----RYL-ESEQLLVNERLN-----------------------LAYRIDDGIPVLLIDE 51 (67)
T ss_dssp CBCTTTCCBC----EEE-TTTTEEEETTTT-----------------------EEEEEETTEECCCSSC
T ss_pred hCCCCCCCcC----eEe-CCCCEEEcCCCC-----------------------ccccCCCCEeeeChhH
Confidence 4566666544 232 346778888772 2246778899888773
No 332
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=21.01 E-value=7.9 Score=42.61 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=19.8
Q ss_pred ccCCCCCccccccccccccccccce
Q 011854 319 PRFGPGNQARNIITEPYKLTRRCDV 343 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~~~~ev 343 (476)
.+|++||+|++||+.+++.....++
T Consensus 348 G~L~~GD~Il~VNg~~v~~~~~~e~ 372 (721)
T 2xkx_A 348 GELRKGDQILSVNGVDLRNASHEQA 372 (721)
T ss_pred CCCccCCEEEEECCEECCCCCHHHH
Confidence 3489999999999999987554443
No 333
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=20.64 E-value=21 Score=27.97 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=16.9
Q ss_pred cCCCCCcccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTR 339 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~ 339 (476)
-|++||+|++||+.++....
T Consensus 46 GL~~GD~I~~ing~~v~~~~ 65 (93)
T 2dls_A 46 GVKEGDRIIKVNGTMVTNSS 65 (93)
T ss_dssp TCCSSCEEEEETTEECSSSC
T ss_pred CCCCCCEEEEECCEECCCCC
Confidence 47899999999999987653
No 334
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=20.57 E-value=26 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=17.6
Q ss_pred cCCCCCccccccccccccccc
Q 011854 320 RFGPGNQARNIITEPYKLTRR 340 (476)
Q Consensus 320 ~~~~g~ri~e~~~~p~~~~~~ 340 (476)
-|.+||.|++||+.++.....
T Consensus 58 GL~~GD~Il~vng~~v~~~~~ 78 (114)
T 1x5n_A 58 GLEIGDQIVEVNGVDFSNLDH 78 (114)
T ss_dssp TCCTTCEEEEETTEETTSCCT
T ss_pred CCCCCCEEEEECCEECCCCCH
Confidence 478999999999999876644
No 335
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.53 E-value=29 Score=26.86 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=16.5
Q ss_pred ccCCCCCccccccccccccc
Q 011854 319 PRFGPGNQARNIITEPYKLT 338 (476)
Q Consensus 319 ~~~~~g~ri~e~~~~p~~~~ 338 (476)
--+++||.|++||+.++...
T Consensus 35 aGl~~GD~I~~ing~~v~~~ 54 (87)
T 2i6v_A 35 IGLQDGDMAVALNGLDLTDP 54 (87)
T ss_dssp TTCCTTCEEEEETTEETTCH
T ss_pred CCCCCCCEEEEECCEECCCH
Confidence 34789999999999998743
No 336
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=20.40 E-value=32 Score=28.47 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=15.2
Q ss_pred ccccccccccccCCcccCCC
Q 011854 168 YREHYHPKCDVCKHFIPSNH 187 (476)
Q Consensus 168 Y~~~f~~~C~~C~~~I~~~~ 187 (476)
|.+.-..+|..|++.|.-..
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDS 39 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTC
T ss_pred EeCCCCCcchhhCCccCCCC
Confidence 55555678999999998754
No 337
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.32 E-value=35 Score=27.07 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCcccCCCCCCCCCceeeccCCcccccccccc
Q 011854 139 ECFCCHACHQPITDIEFSTSENRPYHKSCYRE 170 (476)
Q Consensus 139 ~CF~C~~C~~~L~~~~f~~~dg~~YCk~cY~~ 170 (476)
.=|.|..|...+.+--.....|..||+.|-.+
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~ 37 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVR 37 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHH
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHH
Confidence 34788889888877433324899999988544
Done!