Query 011856
Match_columns 476
No_of_seqs 414 out of 2701
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 16:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ao9_A Beta-phenylalanine amin 100.0 2E-80 6.9E-85 622.7 42.1 408 47-474 38-446 (454)
2 4atq_A 4-aminobutyrate transam 100.0 2.1E-73 7.2E-78 574.7 47.3 402 47-474 21-455 (456)
3 4e3q_A Pyruvate transaminase; 100.0 1.6E-70 5.3E-75 555.7 38.8 414 55-475 26-469 (473)
4 3l44_A Glutamate-1-semialdehyd 100.0 2.5E-67 8.4E-72 533.9 45.1 427 48-474 3-430 (434)
5 3k28_A Glutamate-1-semialdehyd 100.0 1.2E-67 4.2E-72 535.3 42.1 425 49-474 3-427 (429)
6 4e77_A Glutamate-1-semialdehyd 100.0 1.2E-66 4.2E-71 528.0 46.5 423 51-473 5-428 (429)
7 3fq8_A Glutamate-1-semialdehyd 100.0 5.3E-66 1.8E-70 523.0 44.7 425 49-473 2-426 (427)
8 2yky_A Beta-transaminase; tran 100.0 6.1E-70 2.1E-74 550.8 0.0 405 50-474 54-460 (465)
9 2e7u_A Glutamate-1-semialdehyd 100.0 6.5E-63 2.2E-67 499.9 40.9 422 49-471 2-424 (424)
10 2epj_A Glutamate-1-semialdehyd 100.0 4.5E-62 1.5E-66 495.2 42.7 424 50-475 9-432 (434)
11 4ffc_A 4-aminobutyrate aminotr 100.0 2.3E-61 7.7E-66 492.0 47.3 401 48-475 22-450 (453)
12 3oks_A 4-aminobutyrate transam 100.0 1.8E-61 6.2E-66 492.6 46.5 402 47-473 18-450 (451)
13 3hmu_A Aminotransferase, class 100.0 7.4E-61 2.5E-65 489.8 39.4 408 53-474 12-452 (472)
14 3i5t_A Aminotransferase; pyrid 100.0 2E-60 7E-65 487.3 42.3 407 54-474 12-454 (476)
15 3n5m_A Adenosylmethionine-8-am 100.0 5.1E-59 1.7E-63 475.2 43.1 412 51-473 7-451 (452)
16 3tfu_A Adenosylmethionine-8-am 100.0 5.2E-59 1.8E-63 474.5 39.0 395 53-474 30-453 (457)
17 2cy8_A D-phgat, D-phenylglycin 100.0 6E-59 2.1E-63 474.8 38.5 416 50-474 11-435 (453)
18 3gju_A Putative aminotransfera 100.0 2.6E-58 8.9E-63 470.8 43.0 389 79-475 31-457 (460)
19 3dod_A Adenosylmethionine-8-am 100.0 2.1E-58 7E-63 470.0 38.2 405 55-475 4-444 (448)
20 4a6r_A Omega transaminase; tra 100.0 5.9E-58 2E-62 468.0 40.1 385 81-474 32-449 (459)
21 4a0g_A Adenosylmethionine-8-am 100.0 8.8E-59 3E-63 499.0 30.8 413 53-474 331-828 (831)
22 1z7d_A Ornithine aminotransfer 100.0 5.8E-56 2E-60 449.7 42.6 390 50-474 26-429 (433)
23 2oat_A Ornithine aminotransfer 100.0 1.1E-55 3.8E-60 448.3 40.7 388 50-473 37-438 (439)
24 3dxv_A Alpha-amino-epsilon-cap 100.0 2.1E-55 7.1E-60 446.9 41.0 397 53-474 6-425 (439)
25 1zod_A DGD, 2,2-dialkylglycine 100.0 2.2E-54 7.4E-59 438.6 39.7 410 51-475 4-433 (433)
26 3nx3_A Acoat, acetylornithine 100.0 1.8E-54 6.2E-59 433.9 38.3 367 80-473 17-394 (395)
27 3i4j_A Aminotransferase, class 100.0 4.2E-54 1.4E-58 436.1 38.5 385 80-475 10-429 (430)
28 1ohv_A 4-aminobutyrate aminotr 100.0 2E-54 6.9E-59 442.4 34.2 395 48-474 22-471 (472)
29 2pb2_A Acetylornithine/succiny 100.0 1.6E-53 5.5E-58 430.3 38.9 369 81-475 39-419 (420)
30 2cjg_A L-lysine-epsilon aminot 100.0 2.4E-53 8.2E-58 432.5 35.4 366 85-474 39-448 (449)
31 3a8u_X Omega-amino acid--pyruv 100.0 3.1E-51 1.1E-55 417.4 36.4 379 81-475 32-448 (449)
32 2eo5_A 419AA long hypothetical 100.0 8.2E-50 2.8E-54 403.2 42.0 379 53-474 3-418 (419)
33 4adb_A Succinylornithine trans 100.0 1.6E-49 5.3E-54 399.3 42.0 369 81-474 21-400 (406)
34 1sff_A 4-aminobutyrate aminotr 100.0 2.8E-49 9.5E-54 400.1 43.0 401 52-475 3-425 (426)
35 3ruy_A Ornithine aminotransfer 100.0 1.8E-49 6.2E-54 397.1 38.3 360 81-471 18-391 (392)
36 1s0a_A Adenosylmethionine-8-am 100.0 2.1E-49 7.4E-54 401.4 37.8 372 82-474 25-424 (429)
37 2ord_A Acoat, acetylornithine 100.0 9.7E-47 3.3E-51 378.0 38.5 365 80-473 21-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 2E-45 6.7E-50 368.2 36.0 360 81-471 27-394 (395)
39 2eh6_A Acoat, acetylornithine 100.0 5.2E-43 1.8E-47 348.0 38.6 355 80-470 9-374 (375)
40 2w8t_A SPT, serine palmitoyltr 100.0 7.1E-40 2.4E-44 331.3 35.4 366 49-474 23-415 (427)
41 3l8a_A METC, putative aminotra 100.0 3.8E-39 1.3E-43 325.4 23.4 356 78-472 38-420 (421)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 1.9E-36 6.7E-41 303.0 31.8 342 82-474 27-396 (399)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 2.9E-35 9.8E-40 294.9 31.8 343 81-474 27-397 (401)
44 3dzz_A Putative pyridoxal 5'-p 100.0 6.3E-35 2.2E-39 291.2 25.6 356 83-474 11-389 (391)
45 3fdb_A Beta C-S lyase, putativ 100.0 2.2E-35 7.7E-40 293.1 22.0 346 84-474 8-376 (377)
46 3a2b_A Serine palmitoyltransfe 100.0 1E-33 3.5E-38 283.4 33.0 340 81-474 26-392 (398)
47 3kki_A CAI-1 autoinducer synth 100.0 6E-35 2.1E-39 293.5 22.1 332 87-473 47-403 (409)
48 1bs0_A Protein (8-amino-7-oxon 100.0 1.1E-33 3.7E-38 281.8 30.9 337 81-470 22-383 (384)
49 3kax_A Aminotransferase, class 100.0 2.2E-34 7.6E-39 286.4 24.6 352 82-471 6-382 (383)
50 1d2f_A MALY protein; aminotran 100.0 1.5E-32 5.1E-37 274.2 31.9 353 83-474 7-389 (390)
51 4dq6_A Putative pyridoxal phos 100.0 1.4E-33 4.7E-38 281.5 21.9 351 82-471 10-390 (391)
52 1c7n_A Cystalysin; transferase 100.0 5.5E-33 1.9E-37 278.2 20.5 354 83-474 8-393 (399)
53 3ftb_A Histidinol-phosphate am 100.0 1.2E-31 4.1E-36 264.6 28.3 338 82-473 8-360 (361)
54 1yiz_A Kynurenine aminotransfe 100.0 1E-31 3.5E-36 271.6 27.5 353 100-472 38-427 (429)
55 3jtx_A Aminotransferase; NP_28 100.0 4.2E-32 1.4E-36 271.4 20.2 347 82-471 13-395 (396)
56 3ly1_A Putative histidinol-pho 100.0 2.2E-31 7.5E-36 262.0 24.1 334 88-473 5-351 (354)
57 3nra_A Aspartate aminotransfer 100.0 7.7E-32 2.6E-36 270.4 20.7 356 84-474 21-405 (407)
58 2zc0_A Alanine glyoxylate tran 100.0 8.2E-31 2.8E-35 263.0 27.9 339 98-475 33-405 (407)
59 3euc_A Histidinol-phosphate am 100.0 5E-31 1.7E-35 260.9 25.7 326 98-472 29-366 (367)
60 3h14_A Aminotransferase, class 100.0 3.2E-31 1.1E-35 264.6 23.6 335 96-474 28-382 (391)
61 3b1d_A Betac-S lyase; HET: PLP 100.0 1.9E-34 6.5E-39 288.2 0.0 352 82-472 12-391 (392)
62 2z61_A Probable aspartate amin 100.0 2.1E-31 7.2E-36 263.9 21.6 320 97-472 27-369 (370)
63 2dou_A Probable N-succinyldiam 100.0 2.5E-31 8.7E-36 263.9 22.2 331 97-471 23-375 (376)
64 3b46_A Aminotransferase BNA3; 100.0 5.1E-31 1.7E-35 267.9 24.6 352 97-470 55-443 (447)
65 3ezs_A Aminotransferase ASPB; 100.0 4.4E-31 1.5E-35 262.1 21.9 328 96-473 21-374 (376)
66 1j32_A Aspartate aminotransfer 100.0 2.1E-30 7.2E-35 258.4 26.9 338 97-474 28-387 (388)
67 3aow_A Putative uncharacterize 100.0 9.7E-31 3.3E-35 265.7 24.5 336 98-475 75-446 (448)
68 2x5d_A Probable aminotransfera 100.0 5.3E-31 1.8E-35 265.0 21.7 339 96-474 34-398 (412)
69 1lc5_A COBD, L-threonine-O-3-p 100.0 3.9E-31 1.3E-35 261.5 19.5 327 95-474 20-360 (364)
70 3ele_A Amino transferase; RER0 100.0 5.2E-30 1.8E-34 256.4 27.3 330 98-474 34-396 (398)
71 3ffh_A Histidinol-phosphate am 100.0 4.2E-30 1.4E-34 253.8 26.1 320 98-470 31-362 (363)
72 2zyj_A Alpha-aminodipate amino 100.0 5.3E-31 1.8E-35 263.6 19.2 338 98-475 31-394 (397)
73 3dyd_A Tyrosine aminotransfera 100.0 4.4E-30 1.5E-34 259.5 26.0 344 95-474 50-424 (427)
74 1v2d_A Glutamine aminotransfer 100.0 4E-30 1.4E-34 255.8 25.2 328 101-474 27-371 (381)
75 1gd9_A Aspartate aminotransfer 100.0 3.7E-30 1.3E-34 256.6 25.0 334 100-474 27-386 (389)
76 1o4s_A Aspartate aminotransfer 100.0 2.2E-30 7.4E-35 258.5 23.0 332 97-473 39-388 (389)
77 3fvs_A Kynurenine--oxoglutarat 100.0 1.5E-29 5.3E-34 255.0 29.3 355 100-473 29-421 (422)
78 2q7w_A Aspartate aminotransfer 100.0 4.3E-31 1.5E-35 264.0 17.1 333 93-470 20-395 (396)
79 2o1b_A Aminotransferase, class 100.0 9.4E-31 3.2E-35 262.5 18.9 334 97-473 45-402 (404)
80 1vp4_A Aminotransferase, putat 100.0 4.7E-30 1.6E-34 259.1 23.6 341 98-474 42-418 (425)
81 1u08_A Hypothetical aminotrans 100.0 1.6E-29 5.3E-34 251.9 26.8 329 100-469 31-385 (386)
82 3g0t_A Putative aminotransfera 100.0 7.3E-30 2.5E-34 258.5 24.3 345 88-473 33-436 (437)
83 3op7_A Aminotransferase class 100.0 4.4E-30 1.5E-34 254.8 21.6 314 122-474 46-371 (375)
84 3hdo_A Histidinol-phosphate am 100.0 4.5E-30 1.5E-34 253.4 21.5 321 96-472 23-353 (360)
85 3e2y_A Kynurenine-oxoglutarate 100.0 2.8E-29 9.7E-34 252.0 27.5 351 99-469 23-408 (410)
86 2o0r_A RV0858C (N-succinyldiam 100.0 1.9E-29 6.5E-34 253.5 25.7 334 101-473 27-395 (411)
87 3piu_A 1-aminocyclopropane-1-c 100.0 6.1E-30 2.1E-34 259.1 21.4 348 94-474 31-432 (435)
88 3cq5_A Histidinol-phosphate am 100.0 8.5E-29 2.9E-33 245.1 29.1 319 102-472 33-366 (369)
89 2gb3_A Aspartate aminotransfer 100.0 8.7E-30 3E-34 255.8 21.4 331 96-474 40-402 (409)
90 1ajs_A Aspartate aminotransfer 100.0 5.6E-30 1.9E-34 257.4 19.9 342 98-474 29-411 (412)
91 3fkd_A L-threonine-O-3-phospha 100.0 3E-29 1E-33 246.5 24.3 324 86-472 2-340 (350)
92 2bwn_A 5-aminolevulinate synth 100.0 2.3E-28 7.8E-33 244.8 30.9 328 97-474 44-400 (401)
93 3qgu_A LL-diaminopimelate amin 100.0 1E-29 3.5E-34 258.5 20.7 339 96-473 66-439 (449)
94 2ay1_A Aroat, aromatic amino a 100.0 8.8E-30 3E-34 254.4 19.4 336 98-470 25-392 (394)
95 2x5f_A Aspartate_tyrosine_phen 100.0 2.1E-30 7.4E-35 262.0 15.0 344 99-474 47-429 (430)
96 1xi9_A Putative transaminase; 100.0 2.5E-29 8.7E-34 252.2 22.5 340 96-475 35-404 (406)
97 4f4e_A Aromatic-amino-acid ami 100.0 4.2E-29 1.4E-33 251.8 21.2 336 99-471 49-419 (420)
98 3get_A Histidinol-phosphate am 100.0 1.1E-28 3.6E-33 244.0 23.4 322 98-471 29-364 (365)
99 1iay_A ACC synthase 2, 1-amino 100.0 3.6E-28 1.2E-32 245.6 27.1 338 100-473 37-426 (428)
100 1b5p_A Protein (aspartate amin 100.0 3.2E-28 1.1E-32 242.4 25.3 334 98-472 30-383 (385)
101 3fsl_A Aromatic-amino-acid ami 100.0 1.1E-28 3.6E-33 246.7 21.0 334 100-470 27-396 (397)
102 3ei9_A LL-diaminopimelate amin 100.0 1.4E-28 4.8E-33 248.8 21.4 339 96-471 53-425 (432)
103 1fg7_A Histidinol phosphate am 100.0 9.1E-29 3.1E-33 243.7 18.6 313 98-470 28-354 (356)
104 1bw0_A TAT, protein (tyrosine 100.0 4.5E-28 1.5E-32 243.8 20.3 344 99-474 33-413 (416)
105 3rq1_A Aminotransferase class 100.0 9.9E-28 3.4E-32 241.5 22.6 338 98-474 37-415 (418)
106 3asa_A LL-diaminopimelate amin 100.0 7.5E-28 2.6E-32 241.0 21.1 329 98-474 32-393 (400)
107 1yaa_A Aspartate aminotransfer 100.0 4.3E-28 1.5E-32 243.7 19.4 340 97-474 27-411 (412)
108 3p1t_A Putative histidinol-pho 100.0 3.6E-27 1.2E-31 230.2 24.2 314 97-472 14-335 (337)
109 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 9.4E-28 3.2E-32 237.5 17.9 324 100-474 10-370 (371)
110 2r2n_A Kynurenine/alpha-aminoa 100.0 1.5E-26 5E-31 233.5 27.0 301 137-474 80-424 (425)
111 1kmj_A Selenocysteine lyase; p 100.0 1.3E-25 4.3E-30 224.8 32.7 329 97-474 20-405 (406)
112 3f9t_A TDC, L-tyrosine decarbo 100.0 1.7E-26 6E-31 230.1 26.3 315 116-472 42-396 (397)
113 3g7q_A Valine-pyruvate aminotr 99.9 3.7E-27 1.3E-31 237.1 19.0 336 99-474 31-413 (417)
114 1qz9_A Kynureninase; kynurenin 99.9 6.2E-26 2.1E-30 228.1 27.8 324 97-474 27-402 (416)
115 3ez1_A Aminotransferase MOCR f 99.9 2.5E-27 8.6E-32 238.9 17.3 339 101-474 27-415 (423)
116 3t18_A Aminotransferase class 99.9 1.5E-26 5.2E-31 232.4 22.4 335 98-474 36-410 (413)
117 3if2_A Aminotransferase; YP_26 99.9 1.3E-26 4.4E-31 235.3 22.0 305 138-475 86-441 (444)
118 1uu1_A Histidinol-phosphate am 99.9 6.2E-27 2.1E-31 228.6 17.5 307 99-470 19-334 (335)
119 1elu_A L-cysteine/L-cystine C- 99.9 2.2E-26 7.6E-31 229.1 21.5 320 113-470 25-388 (390)
120 2dr1_A PH1308 protein, 386AA l 99.9 4.8E-26 1.6E-30 226.4 23.4 328 99-474 20-379 (386)
121 1t3i_A Probable cysteine desul 99.9 1.2E-24 4.3E-29 218.6 32.3 332 96-474 24-413 (420)
122 1eg5_A Aminotransferase; PLP-d 99.9 2.6E-25 8.8E-30 220.8 26.2 323 100-474 3-376 (384)
123 3d6k_A Putative aminotransfera 99.9 1.3E-26 4.5E-31 233.7 16.6 337 101-474 34-418 (422)
124 3ppl_A Aspartate aminotransfer 99.9 1E-26 3.6E-31 234.7 15.7 298 141-474 80-420 (427)
125 1vjo_A Alanine--glyoxylate ami 99.9 5.2E-26 1.8E-30 226.9 20.0 323 98-471 33-392 (393)
126 3meb_A Aspartate aminotransfer 99.9 4.9E-26 1.7E-30 231.1 18.5 283 155-474 117-444 (448)
127 3kgw_A Alanine-glyoxylate amin 99.9 4.2E-26 1.5E-30 227.2 17.5 317 116-474 34-388 (393)
128 2z9v_A Aspartate aminotransfer 99.9 2.7E-25 9.3E-30 221.5 22.9 328 99-474 9-371 (392)
129 1ax4_A Tryptophanase; tryptoph 99.9 1.7E-25 5.7E-30 228.5 20.7 349 97-473 41-440 (467)
130 4eu1_A Mitochondrial aspartate 99.9 3.6E-26 1.2E-30 229.4 14.5 331 99-471 41-408 (409)
131 1m32_A 2-aminoethylphosphonate 99.9 4.7E-25 1.6E-29 217.4 22.1 326 101-473 5-364 (366)
132 2dkj_A Serine hydroxymethyltra 99.9 1.7E-25 5.9E-30 224.1 19.0 327 99-473 23-387 (407)
133 3ke3_A Putative serine-pyruvat 99.9 7.6E-25 2.6E-29 217.5 23.0 333 92-474 5-376 (379)
134 3zrp_A Serine-pyruvate aminotr 99.9 2.1E-25 7.3E-30 221.4 18.9 315 116-474 13-363 (384)
135 3cai_A Possible aminotransfera 99.9 1.2E-23 4.2E-28 210.6 31.3 321 98-469 26-404 (406)
136 1svv_A Threonine aldolase; str 99.9 5.6E-25 1.9E-29 216.3 20.7 324 101-474 15-358 (359)
137 1v72_A Aldolase; PLP-dependent 99.9 1.1E-24 3.9E-29 214.0 22.8 322 99-474 7-353 (356)
138 3f0h_A Aminotransferase; RER07 99.9 6E-25 2E-29 217.8 20.5 316 116-474 30-374 (376)
139 3nnk_A Ureidoglycine-glyoxylat 99.9 6.8E-25 2.3E-29 220.0 20.8 317 116-474 24-390 (411)
140 3lvm_A Cysteine desulfurase; s 99.9 3.9E-24 1.3E-28 215.4 26.3 328 95-474 19-399 (423)
141 3isl_A Purine catabolism prote 99.9 1.7E-24 5.9E-29 217.4 23.7 321 113-474 15-390 (416)
142 3f6t_A Aspartate aminotransfer 99.9 3.7E-25 1.3E-29 229.0 18.2 354 98-474 98-525 (533)
143 7aat_A Aspartate aminotransfer 99.9 1.5E-24 5.3E-29 216.9 21.4 331 101-471 30-400 (401)
144 2yrr_A Aminotransferase, class 99.9 1.4E-24 4.7E-29 212.9 19.1 312 116-473 11-352 (353)
145 2ez2_A Beta-tyrosinase, tyrosi 99.9 2.6E-24 8.8E-29 219.0 20.8 347 97-474 40-431 (456)
146 3e9k_A Kynureninase; kynurenin 99.9 3.2E-24 1.1E-28 219.0 19.5 335 98-473 67-460 (465)
147 1jg8_A L-ALLO-threonine aldola 99.9 9.6E-24 3.3E-28 206.8 22.0 330 99-474 3-346 (347)
148 2huf_A Alanine glyoxylate amin 99.9 5.7E-24 1.9E-28 212.0 20.7 329 96-474 16-383 (393)
149 3k7y_A Aspartate aminotransfer 99.9 4.9E-24 1.7E-28 212.7 19.5 333 100-473 30-404 (405)
150 2oqx_A Tryptophanase; lyase, p 99.9 1.7E-24 5.7E-29 221.1 16.1 345 98-474 40-442 (467)
151 2oga_A Transaminase; PLP-depen 99.9 1.8E-23 6.3E-28 209.0 22.4 320 99-474 30-396 (399)
152 4hvk_A Probable cysteine desul 99.9 5.7E-23 1.9E-27 203.5 23.5 321 101-474 3-373 (382)
153 3tcm_A Alanine aminotransferas 99.9 3.1E-23 1.1E-27 213.2 22.1 333 116-474 107-494 (500)
154 2rfv_A Methionine gamma-lyase; 99.9 3.1E-23 1.1E-27 207.3 21.0 285 136-469 61-395 (398)
155 2vi8_A Serine hydroxymethyltra 99.9 3.7E-23 1.3E-27 206.9 21.7 326 100-474 25-387 (405)
156 1iug_A Putative aspartate amin 99.9 3.3E-23 1.1E-27 203.2 20.6 310 116-475 12-349 (352)
157 3mad_A Sphingosine-1-phosphate 99.9 1.2E-22 4.2E-27 209.8 25.8 319 116-474 108-469 (514)
158 2ch1_A 3-hydroxykynurenine tra 99.9 2.3E-23 7.7E-28 207.9 19.2 315 116-474 29-383 (396)
159 3ihj_A Alanine aminotransferas 99.9 5.2E-23 1.8E-27 211.3 22.4 332 116-474 102-493 (498)
160 4eb5_A Probable cysteine desul 99.9 3.6E-22 1.2E-26 198.0 27.5 320 101-474 3-373 (382)
161 3a9z_A Selenocysteine lyase; P 99.9 1.4E-22 4.6E-27 204.8 24.0 332 97-474 17-428 (432)
162 3ecd_A Serine hydroxymethyltra 99.9 3E-22 1E-26 201.6 26.3 313 117-474 45-397 (425)
163 3lws_A Aromatic amino acid bet 99.9 4.7E-24 1.6E-28 209.9 12.5 327 99-471 3-356 (357)
164 3vax_A Putative uncharacterize 99.9 5.6E-24 1.9E-28 212.6 13.2 331 93-473 15-399 (400)
165 3qhx_A Cystathionine gamma-syn 99.9 1.5E-22 5E-27 201.9 23.3 257 136-444 63-342 (392)
166 1cs1_A CGS, protein (cystathio 99.9 2.1E-22 7.2E-27 200.4 24.4 256 136-443 49-324 (386)
167 2aeu_A Hypothetical protein MJ 99.9 1.1E-22 3.7E-27 201.6 21.7 320 100-475 29-372 (374)
168 1mdo_A ARNB aminotransferase; 99.9 2.4E-22 8.3E-27 200.3 23.8 310 117-473 19-385 (393)
169 3pj0_A LMO0305 protein; struct 99.9 4.1E-23 1.4E-27 203.2 16.7 315 111-470 23-358 (359)
170 3n0l_A Serine hydroxymethyltra 99.9 7.4E-22 2.5E-26 198.3 24.6 314 116-473 37-388 (417)
171 1e5e_A MGL, methionine gamma-l 99.9 3E-22 1E-26 200.4 21.6 281 138-475 61-396 (404)
172 2bkw_A Alanine-glyoxylate amin 99.9 1.5E-22 5.1E-27 201.0 19.0 312 116-473 16-383 (385)
173 1wyu_B Glycine dehydrogenase s 99.9 8E-22 2.7E-26 201.5 24.5 316 113-472 75-439 (474)
174 3acz_A Methionine gamma-lyase; 99.9 8E-22 2.8E-26 196.3 23.7 281 136-473 56-388 (389)
175 1b9h_A AHBA synthase, protein 99.9 2.7E-21 9.2E-26 192.4 27.4 311 117-473 16-387 (388)
176 3ndn_A O-succinylhomoserine su 99.9 2.7E-22 9.1E-27 201.0 20.0 288 136-471 78-413 (414)
177 3uwc_A Nucleotide-sugar aminot 99.9 9.9E-23 3.4E-27 201.7 16.0 305 120-473 21-370 (374)
178 2po3_A 4-dehydrase; external a 99.9 1.8E-21 6.1E-26 196.2 25.4 311 111-473 26-385 (424)
179 2zy4_A L-aspartate beta-decarb 99.9 1.4E-22 4.8E-27 209.8 17.4 346 111-474 112-522 (546)
180 3h7f_A Serine hydroxymethyltra 99.9 2.4E-21 8.2E-26 196.5 24.8 315 116-473 57-413 (447)
181 3mc6_A Sphingosine-1-phosphate 99.9 1.1E-21 3.8E-26 201.8 22.1 320 116-474 76-437 (497)
182 1gc0_A Methionine gamma-lyase; 99.9 2E-21 7E-26 194.1 23.4 217 136-386 62-282 (398)
183 3frk_A QDTB; aminotransferase, 99.9 4.2E-22 1.4E-26 197.2 17.9 304 117-472 16-366 (373)
184 4h51_A Aspartate aminotransfer 99.9 2.4E-21 8.2E-26 193.4 22.8 323 117-475 64-418 (420)
185 2cb1_A O-acetyl homoserine sul 99.9 6.5E-21 2.2E-25 191.3 25.9 301 111-469 28-411 (412)
186 1ibj_A CBL, cystathionine beta 99.9 3E-22 1E-26 203.2 16.3 311 112-474 100-462 (464)
187 3nyt_A Aminotransferase WBPE; 99.9 5.4E-22 1.8E-26 196.1 17.5 301 118-470 16-360 (367)
188 3nmy_A Xometc, cystathionine g 99.9 8E-22 2.7E-26 196.6 18.4 232 136-409 64-321 (400)
189 3gbx_A Serine hydroxymethyltra 99.9 1.8E-21 6.2E-26 195.5 20.6 313 116-473 42-395 (420)
190 2fnu_A Aminotransferase; prote 99.9 3.1E-21 1.1E-25 190.8 21.5 312 116-474 11-372 (375)
191 2qma_A Diaminobutyrate-pyruvat 99.9 8.5E-21 2.9E-25 195.1 25.5 340 97-474 99-496 (497)
192 1o69_A Aminotransferase; struc 99.9 8.1E-21 2.8E-25 189.5 24.5 323 117-473 11-386 (394)
193 1pff_A Methionine gamma-lyase; 99.9 4.4E-21 1.5E-25 186.6 21.2 275 143-470 2-330 (331)
194 3dr4_A Putative perosamine syn 99.9 1.4E-21 4.8E-26 194.7 16.7 306 117-471 35-390 (391)
195 3ffr_A Phosphoserine aminotran 99.9 2.8E-21 9.5E-26 190.1 17.1 307 116-471 15-361 (362)
196 1qgn_A Protein (cystathionine 99.9 3.6E-20 1.2E-24 186.5 25.0 287 137-473 112-444 (445)
197 2ctz_A O-acetyl-L-homoserine s 99.9 2.8E-20 9.6E-25 187.1 21.8 281 137-471 56-420 (421)
198 1n8p_A Cystathionine gamma-lya 99.8 9E-20 3.1E-24 181.7 21.5 212 136-386 52-273 (393)
199 3cog_A Cystathionine gamma-lya 99.8 1.1E-19 3.6E-24 181.7 20.5 214 136-386 64-283 (403)
200 3b8x_A WBDK, pyridoxamine 5-ph 99.8 4.6E-19 1.6E-23 176.4 24.4 304 116-467 13-389 (390)
201 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 9.4E-19 3.2E-23 176.9 26.4 324 97-472 29-434 (437)
202 2c81_A Glutamine-2-deoxy-scyll 99.8 3.9E-19 1.3E-23 178.6 22.6 313 117-474 15-414 (418)
203 2jis_A Cysteine sulfinic acid 99.8 2.8E-18 9.5E-23 177.1 28.4 310 139-473 148-514 (515)
204 2okj_A Glutamate decarboxylase 99.8 1.9E-18 6.7E-23 177.8 25.7 316 139-475 132-503 (504)
205 2z67_A O-phosphoseryl-tRNA(SEC 99.8 1.5E-18 5.1E-23 176.3 22.7 296 139-471 133-455 (456)
206 3bwn_A AT1G70560, L-tryptophan 99.8 3.1E-20 1.1E-24 185.0 8.9 277 138-473 71-386 (391)
207 2x3l_A ORN/Lys/Arg decarboxyla 99.8 1.7E-19 5.8E-24 182.6 14.2 288 137-473 55-352 (446)
208 3ht4_A Aluminum resistance pro 99.8 2E-18 6.8E-23 173.4 21.7 287 116-437 36-344 (431)
209 1w23_A Phosphoserine aminotran 99.8 3E-19 1E-23 175.5 14.5 307 116-473 14-359 (360)
210 2dgk_A GAD-beta, GADB, glutama 99.8 1E-17 3.5E-22 170.1 25.9 323 116-474 54-434 (452)
211 3ri6_A O-acetylhomoserine sulf 99.8 3.9E-18 1.4E-22 171.1 20.4 281 136-471 79-429 (430)
212 2c0r_A PSAT, phosphoserine ami 99.8 6E-18 2E-22 166.5 20.9 304 116-473 15-360 (362)
213 1rv3_A Serine hydroxymethyltra 99.8 5E-18 1.7E-22 173.6 20.8 316 116-473 56-430 (483)
214 2a7v_A Serine hydroxymethyltra 99.8 1.6E-17 5.5E-22 168.6 23.2 313 116-472 66-439 (490)
215 2fq6_A Cystathionine beta-lyas 99.8 5.6E-18 1.9E-22 169.5 19.6 216 136-387 79-300 (415)
216 3ju7_A Putative PLP-dependent 99.8 3.7E-17 1.3E-21 161.7 23.2 314 116-473 14-374 (377)
217 2hox_A ALLIIN lyase 1; cystein 99.8 1.3E-18 4.3E-23 175.3 12.5 316 97-472 54-423 (427)
218 3jzl_A Putative cystathionine 99.8 1.4E-17 4.7E-22 165.9 18.8 281 116-438 30-339 (409)
219 4e1o_A HDC, histidine decarbox 99.8 4E-16 1.4E-20 159.4 29.9 323 119-475 94-479 (481)
220 1js3_A DDC;, DOPA decarboxylas 99.8 2.4E-16 8.1E-21 161.5 27.1 325 118-475 88-475 (486)
221 3k40_A Aromatic-L-amino-acid d 99.8 3.5E-16 1.2E-20 159.5 27.9 304 138-475 112-472 (475)
222 3hbx_A GAD 1, glutamate decarb 99.7 5.4E-16 1.8E-20 159.2 26.8 321 116-474 68-444 (502)
223 3vp6_A Glutamate decarboxylase 99.7 1.3E-15 4.3E-20 156.7 29.5 336 117-473 108-504 (511)
224 2fyf_A PSAT, phosphoserine ami 99.7 6.2E-17 2.1E-21 161.5 18.8 302 116-473 51-397 (398)
225 3hvy_A Cystathionine beta-lyas 99.7 1.4E-16 4.7E-21 159.2 19.2 283 116-437 45-355 (427)
226 3i16_A Aluminum resistance pro 99.7 3.7E-16 1.3E-20 156.1 21.6 278 117-438 45-356 (427)
227 1c4k_A Protein (ornithine deca 99.6 5.8E-15 2E-19 156.4 20.2 310 137-473 171-565 (730)
228 3n75_A LDC, lysine decarboxyla 99.6 4.9E-15 1.7E-19 155.8 17.1 307 137-472 193-558 (715)
229 2vyc_A Biodegradative arginine 99.6 1.1E-14 3.9E-19 155.5 19.4 316 137-473 203-604 (755)
230 1wyu_A Glycine dehydrogenase ( 99.6 1.6E-14 5.6E-19 145.8 18.8 280 139-471 108-437 (438)
231 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 3.9E-13 1.3E-17 131.7 20.4 291 154-474 133-461 (501)
232 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 1.5E-12 5E-17 129.3 21.7 233 139-392 98-342 (450)
233 3e77_A Phosphoserine aminotran 99.5 7.6E-14 2.6E-18 136.8 12.2 319 112-473 20-374 (377)
234 3m5u_A Phosphoserine aminotran 99.4 5.7E-12 1.9E-16 123.0 17.1 307 116-473 16-359 (361)
235 3qm2_A Phosphoserine aminotran 99.4 7.2E-13 2.5E-17 130.6 10.5 319 99-473 27-384 (386)
236 3ou5_A Serine hydroxymethyltra 99.1 1.1E-08 3.9E-13 99.9 19.6 313 116-472 66-439 (490)
237 1vhx_A Putative holliday junct 60.9 13 0.00046 30.3 5.4 57 232-290 43-101 (150)
238 1tks_A 3,4-dihydroxy-2-butanon 51.9 15 0.00051 31.6 4.3 36 246-285 159-194 (204)
239 3mio_A DHBP synthase, 3,4-dihy 47.1 26 0.00088 30.2 5.0 36 246-285 158-194 (206)
240 1g57_A DHBP synthase, 3,4-dihy 38.9 37 0.0013 29.5 4.8 35 246-285 167-201 (217)
241 1snn_A DHBP synthase, 3,4-dihy 38.3 36 0.0012 29.8 4.6 35 246-285 178-212 (227)
242 3r0u_A Enzyme of enolase super 37.9 2.2E+02 0.0077 26.8 10.8 147 116-286 142-296 (379)
243 1x7f_A Outer surface protein; 36.8 42 0.0014 32.0 5.3 59 267-333 74-133 (385)
244 3u9i_A Mandelate racemase/muco 36.6 2.4E+02 0.0081 26.8 10.8 145 116-286 165-326 (393)
245 3ik4_A Mandelate racemase/muco 36.2 2.4E+02 0.0084 26.4 10.7 145 116-286 143-296 (365)
246 1iv0_A Hypothetical protein; r 35.8 43 0.0015 25.0 4.2 52 232-290 39-96 (98)
247 3jva_A Dipeptide epimerase; en 34.7 2.3E+02 0.0079 26.4 10.3 146 116-286 139-291 (354)
248 3s5s_A Mandelate racemase/muco 33.1 2.4E+02 0.0082 26.7 10.2 146 116-287 144-298 (389)
249 3bzy_B ESCU; auto cleavage pro 32.5 25 0.00087 25.4 2.3 22 269-290 29-50 (83)
250 1gff_3 Bacteriophage G4 capsid 31.2 21 0.00071 18.7 1.2 15 87-101 11-25 (26)
251 3q45_A Mandelate racemase/muco 31.2 2.2E+02 0.0074 26.8 9.5 146 116-286 140-292 (368)
252 3pzt_A Endoglucanase; alpha/be 31.1 1.2E+02 0.004 28.1 7.5 53 232-287 70-125 (327)
253 3p8k_A Hydrolase, carbon-nitro 31.0 54 0.0018 29.6 5.0 53 233-285 39-100 (281)
254 2dt9_A Aspartokinase; protein- 29.7 1.4E+02 0.0047 24.4 6.9 47 425-471 110-156 (167)
255 2ps2_A Putative mandelate race 28.4 2.5E+02 0.0085 26.3 9.4 143 116-285 146-295 (371)
256 3fv9_G Mandelate racemase/muco 27.0 3.7E+02 0.013 25.4 10.3 145 116-286 145-300 (386)
257 3t7y_A YOP proteins translocat 26.9 35 0.0012 25.4 2.3 23 268-290 43-65 (97)
258 2vt1_B Surface presentation of 26.9 36 0.0012 25.2 2.3 22 269-290 29-50 (93)
259 2p0o_A Hypothetical protein DU 26.8 51 0.0017 31.3 4.0 59 267-333 50-109 (372)
260 1k7c_A Rhamnogalacturonan acet 26.8 1.4E+02 0.0049 25.6 6.9 38 247-284 126-167 (233)
261 3c01_E Surface presentation of 25.8 38 0.0013 25.3 2.3 22 269-290 29-50 (98)
262 1k4i_A 3,4-dihydroxy-2-butanon 25.2 1.2E+02 0.004 26.6 5.6 36 246-285 167-212 (233)
263 4gqr_A Pancreatic alpha-amylas 25.1 1E+02 0.0035 30.0 6.2 26 266-291 76-101 (496)
264 3o63_A Probable thiamine-phosp 24.7 53 0.0018 29.1 3.5 97 233-335 46-152 (243)
265 3rcm_A TATD family hydrolase; 24.3 2.9E+02 0.0098 24.9 8.6 101 154-286 30-133 (287)
266 3v7e_A Ribosome-associated pro 24.2 1.9E+02 0.0066 20.4 6.4 45 233-287 16-60 (82)
267 3ivz_A Nitrilase; alpha-beta s 23.1 59 0.002 28.9 3.6 53 233-285 20-85 (262)
268 3io5_A Recombination and repai 22.3 3.1E+02 0.011 25.4 8.3 45 245-289 110-172 (333)
269 2qdd_A Mandelate racemase/muco 22.1 4.4E+02 0.015 24.6 9.8 142 116-286 145-294 (378)
270 3i4k_A Muconate lactonizing en 22.0 4.7E+02 0.016 24.5 10.0 142 116-285 148-301 (383)
271 2rdx_A Mandelate racemase/muco 20.4 5.3E+02 0.018 24.0 12.2 143 116-286 145-294 (379)
272 2lbw_A H/ACA ribonucleoprotein 20.4 1.7E+02 0.006 22.5 5.4 44 233-285 25-68 (121)
273 7a3h_A Endoglucanase; hydrolas 20.2 69 0.0024 29.2 3.5 21 267-287 80-100 (303)
274 1nu0_A Hypothetical protein YQ 20.1 1E+02 0.0035 24.6 4.0 57 232-291 41-100 (138)
No 1
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=2e-80 Score=622.75 Aligned_cols=408 Identities=33% Similarity=0.539 Sum_probs=374.6
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
....++|+++++++++++|+|+++++|.|.++ |+++++++|+|+||+|||+||||+++|+++++||+||+|++|+.+
T Consensus 38 ~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~---P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~ 114 (454)
T 4ao9_A 38 TDANPASQRQFEAQARYMPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIE 114 (454)
T ss_dssp HHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSC---CCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHH
T ss_pred hhcCcHhHHHHHHHhhhCCCCCCCCccccCCC---CccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHH
Confidence 34478899999999999999999999988764 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 127 ~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
|++++.+++.++..+.+|+++|++.+|+.++|+|+|||+||++.|||+||.+++|++||.|+++|||+++......+.
T Consensus 115 q~~~~~~~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~-- 192 (454)
T 4ao9_A 115 AMQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP-- 192 (454)
T ss_dssp HHHTCSCCCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT--
T ss_pred HHhcCCCccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC--
Confidence 999988888888889999999999999999999999999999999999999999999999999999988765432221
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
.....+...+||||++++++.++++++++++||+||+++++|.+.|+++||++|+++|++||++||+|
T Consensus 193 ------------~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D 260 (454)
T 4ao9_A 193 ------------TTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD 260 (454)
T ss_dssp ------------TSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ------------ccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE
Confidence 11223577889999999999999888899999999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC-CCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~-~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
||||| |+|.+|+++++|+.||++|++|++|+|+|+|++++++++++.+.+ .++.+|++||++||++|+|++++|+.++
T Consensus 261 EV~tG-R~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~ 339 (454)
T 4ao9_A 261 EVMTS-RLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF 339 (454)
T ss_dssp CTTGG-GGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS
T ss_pred CCCcC-CCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh
Confidence 99998 999999999999999999999999999999999999999999975 3567799999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC
Q 011856 366 EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 445 (476)
++++++++++++++|+++|+++..+++++.++++.|+|++++|.++++.++.+....+......++..|+++||++.|.+
T Consensus 340 ~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~ 419 (454)
T 4ao9_A 340 TPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG 419 (454)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC
T ss_pred ccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC
Confidence 89999999999999999999999999999999999999999998887788777777777788889999999999999875
Q ss_pred CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 446 FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+++++.||++|||+++++|++++.+.
T Consensus 420 --~~~~s~~~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 420 --FVVLSLPLTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp --EEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred --CEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999864
No 2
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=2.1e-73 Score=574.69 Aligned_cols=402 Identities=25% Similarity=0.347 Sum_probs=347.5
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
..+.|+|++++++++++++.|+.++ +|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+.+
T Consensus 21 ~iPGP~s~~l~~r~~~~~~~~~~~~---------~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ 91 (456)
T 4atq_A 21 AFPGPKSQALAERRSAVVAAGVASG---------VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQE 91 (456)
T ss_dssp SSSCHHHHHHHHHHHHHBCTTCCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCCCCC---------CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHH
Confidence 5668899999999999999988654 4999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh
Q 011856 127 TMKKGTS---FGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 127 ~l~~~~~---~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
|+++..+ +..+++...+|+++|.+..| ..++++|+|||+||++.|+|+||.+++|.+||.++++|||++++++..
T Consensus 92 q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~ 171 (456)
T 4atq_A 92 AAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMAL 171 (456)
T ss_dssp HHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcccccccc
Confidence 9998543 34568889999999999998 378999999999999999999999999999999999999999999988
Q ss_pred cCCCCc-cCCC-CCCCCCCCCCCCceeeccC-----------CCHHHHHHHHhc-----CCCCeEEEEEcccCCCCCccc
Q 011856 202 AGSGVA-TLGL-PDSPGVPKGATYETLTAPF-----------NDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIA 263 (476)
Q Consensus 202 ~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-----------~d~~~le~~l~~-----~~~~~a~vi~ep~~~~~G~i~ 263 (476)
++.... ...+ |.. ..+..+|+ ++.+.+++.++. .++++++||+||+++++|.+.
T Consensus 172 t~~~~~~~~~~~p~~--------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 172 TAKAMPYKTNFGPFA--------PEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp CCCCTTTTTTSCSCC--------SSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccCccccccCCCCcc--------ccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 876431 1111 111 12333332 234444444331 345899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCcc
Q 011856 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 342 (476)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~ 342 (476)
|+++||++|+++|++||++||+||||||| |+|.+|+++++|+.|||+|++|+++||+|+|++++++++++.+. +..
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~---~~~ 320 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVH---PGG 320 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTS
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhccc---ccC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999887 456
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-----CCceEeeeeceeEEEEEecCCCcCch
Q 011856 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
|++||++||++|++++++|+.++++++.+++++++++++++|+++..++ +++.+|||.|+|++++|.++..
T Consensus 321 ~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~---- 396 (456)
T 4atq_A 321 LGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGS---- 396 (456)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTS----
T ss_pred CCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCC----
Confidence 8999999999999999999999999999999999999999999998775 5688999999999999976421
Q ss_pred hhcccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 418 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++.+...++...|+++|+++.+.+. +.+++ ++++|++++|+++++|++++++.
T Consensus 397 --~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 397 --KEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp --CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --CCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 235667778899999999999987654 34554 78999999999999999999863
No 3
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=1.6e-70 Score=555.66 Aligned_cols=414 Identities=17% Similarity=0.204 Sum_probs=336.8
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-
Q 011856 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS- 133 (476)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~- 133 (476)
.+.++++++...+. +.++.+... .|++|++|+|+|+||+|||+||||.++|+++++||+||+|.+|+.+|+++...
T Consensus 26 ~~~~~~~~~~~h~~-t~~~~~~~~--~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~ 102 (473)
T 4e3q_A 26 SWEARAETYSLYGF-TDMPSLHQR--GTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGY 102 (473)
T ss_dssp SHHHHHHHHBCCSS-CCHHHHHHH--CCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHhhhcCCCC-CChhhhccC--CCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccc
Confidence 35666777766544 234444333 39999999999999999999999999999999999999999999999998543
Q ss_pred ---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcC
Q 011856 134 ---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG 203 (476)
Q Consensus 134 ---~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g 203 (476)
++.+++...+|+++|++..| +.++|+|+|||+||++.|+|+||.+ +++.+||.++++|||.+.+++..++
T Consensus 103 ~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg 182 (473)
T 4e3q_A 103 HAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTG 182 (473)
T ss_dssp CCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred cccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccc
Confidence 34467889999999999998 6899999999999999999999876 6778999999999999999999888
Q ss_pred CCCccCCCCCCCCCCCCCCCceeeccC-C---------CHHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 011856 204 SGVATLGLPDSPGVPKGATYETLTAPF-N---------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (476)
........+..++......+..+.... . ..+++++.+.+ .++++++||+||+++++|.+.|+++||++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~l 262 (473)
T 4e3q_A 183 KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAI 262 (473)
T ss_dssp CGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHH
Confidence 643321112122211000000011100 0 13456666643 456899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC----CCCccccCC
Q 011856 273 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGT 346 (476)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~----~~~~~~~~t 346 (476)
+++|++||++||+|||+||| |+|.+|+++++|+.||++|++|++++| +|+|++++++++++.+.. .....|++|
T Consensus 263 r~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T 342 (473)
T 4e3q_A 263 LPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFT 342 (473)
T ss_dssp HHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCT
T ss_pred HHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCC
Confidence 99999999999999999999 999999999999999999999999988 899999999999987753 135679999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHH
Q 011856 347 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (476)
Q Consensus 347 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (476)
|++||++|++++++|+.++++++.+++++++++|+++|+++. +++.+.++++.|+|+++++..+..... ...++...
T Consensus 343 ~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~--~~~~~~~~ 419 (473)
T 4e3q_A 343 ASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKT--PFDGNLSV 419 (473)
T ss_dssp TTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCH
T ss_pred CCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccc--cccccHHH
Confidence 999999999999999999999999999999999999999985 456788999999999999975432210 01123345
Q ss_pred HHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 427 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 427 ~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..++.+.|+++|+++.+.+ +.+++ ++++|++|+|+++++|++++++++
T Consensus 420 ~~~~~~~~~~~Gll~~~~g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 420 SERIANTCTDLGLICRPLG-QSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp HHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999876 34544 689999999999999999998764
No 4
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=2.5e-67 Score=533.92 Aligned_cols=427 Identities=47% Similarity=0.866 Sum_probs=375.5
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
+++++|+++++++++++|+|+++++|.|..++ .+|+++++++|+++||.|||+||||.++++++++||+||+|.+|+.+
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~ 82 (434)
T 3l44_A 3 VKFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITT 82 (434)
T ss_dssp SCCHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHH
Confidence 34778999999999999999999999887665 67999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 127 ~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
+++++..++++++...+|++++++.+++.++++|++||+||++.|+++++.++++++||+++++|||++..++...+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 162 (434)
T 3l44_A 83 AAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGP 162 (434)
T ss_dssp HHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-----
T ss_pred HHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcc
Confidence 99987767889999999999999999888999999999999999999998888999999999999999998888777655
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
.....|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D 242 (434)
T 3l44_A 163 STLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 242 (434)
T ss_dssp --CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred cccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 44444545555443445688899999999999998655579999999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC
Q 011856 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (476)
|+|+|||+|.+++.+++++.||++||||++++|+|+|++++++++++.+.+.++..+++|+++|++++++++++|+.+++
T Consensus 243 Ev~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~ 322 (434)
T 3l44_A 243 EVITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ 322 (434)
T ss_dssp CTTTTTTSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred ccccceeccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence 99999988888888999999999999999999999999999999999887555567888999999999999999999887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 446 (476)
+++.++++++++++++.|+++...++.+..+++.|.|+++++......++.....++.....++.+.|+++||++.+++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 402 (434)
T 3l44_A 323 EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY 402 (434)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC
Confidence 89999999999999999999887788888899999999999975544444443445556667889999999999999887
Q ss_pred cceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 447 EAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+++++.+|++++++++++|+++++++
T Consensus 403 ~~~rl~~~~t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 403 EAWFLTTEHTKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp CCEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccCHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999998765
No 5
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1.2e-67 Score=535.27 Aligned_cols=425 Identities=57% Similarity=0.964 Sum_probs=378.4
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
++++|+++++++++++|+|+++++|.|..++.+|+++++++|+++||.|||+||||+++++++++||+||+|.+|+.+++
T Consensus 3 ~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~ 82 (429)
T 3k28_A 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVA 82 (429)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||.++++|||++..++...+.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 83 ERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred hhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98766778899999999999999988899999999999999999999888899999999999999999888777765544
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 242 (429)
T 3k28_A 163 LGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242 (429)
T ss_dssp ---CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred cCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44454455543334568889999999999999865567999999999999999999999999999999999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
|+||++|.+++.+++++.||++||||++++|+|+|++++++++++.+.+..+..+.+|+++|++++++++++|+.++ ++
T Consensus 243 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~ 321 (429)
T 3k28_A 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PE 321 (429)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HH
T ss_pred ccccccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HH
Confidence 99997777788889999999999999999999999999999999988754556688899999999999999999776 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.++++++++++++.|+++...++.+..+++.|.++++++.+.+..++.....++.....++.+.|+++||++.+++...
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 401 (429)
T 3k28_A 322 SYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEG 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCC
Confidence 89999999999999999988788888889999999999997666666666666677777889999999999999987777
Q ss_pred eEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 449 GFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 449 ~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++++.+|++++++++++|+++++++
T Consensus 402 ~r~~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 402 LFLSTVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp BCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998764
No 6
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=1.2e-66 Score=527.98 Aligned_cols=423 Identities=53% Similarity=0.948 Sum_probs=366.6
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
++|.++++++++++|+|+++++|.|..++++|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 84 (429)
T 4e77_A 5 SKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER 84 (429)
T ss_dssp CHHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999888888777789999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC
Q 011856 131 GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 131 ~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
+..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++...+...+.+.....
T Consensus 85 ~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 164 (429)
T 4e77_A 85 GLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 164 (429)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC-----------------
T ss_pred CcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccC
Confidence 76677899999999999999998889999999999999999999999999999999999999999877766555443333
Q ss_pred CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011856 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
.+...+++......+..++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~ 244 (429)
T 4e77_A 165 QPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT 244 (429)
T ss_dssp -CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 34445555555567888999999999999987666899999999999999999999999999999999999999999999
Q ss_pred CccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 291 g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
|||+|..+..+++++.||++||||++++|+|+|++++++++++.+.+.+...+.+||++|++++++++++|+.++++++.
T Consensus 245 g~r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 324 (429)
T 4e77_A 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVY 324 (429)
T ss_dssp BTTTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHH
T ss_pred CcccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 99888888889999999999999999999999999999999998875445568889999999999999999999778999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC-CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
++++++++++++.|+++..+++.+..+++.|+|+++++.+. ...++.....++.....++.+.|+++||++.+++.+.+
T Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~ 404 (429)
T 4e77_A 325 ETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAG 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCE
Confidence 99999999999999998878888888999999999999764 35566655666667778899999999999999887778
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 450 FTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 450 ~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
++++.+|++++++++++|++++++
T Consensus 405 ~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 405 FMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeccCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999865
No 7
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=5.3e-66 Score=523.01 Aligned_cols=425 Identities=72% Similarity=1.202 Sum_probs=379.3
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
.+++|.++++++++++|+|+++++|.|..++++|+++++|+|+++||.||++||||.++++++++||+||+|.+|+.+++
T Consensus 2 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (427)
T 3fq8_A 2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM 81 (427)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++..++++.+...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 82 EKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp TTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 98766777899999999999999987899999999999999999999999999999999999999998877766655443
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|...+++.....++..+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 241 (427)
T 3fq8_A 162 LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp HTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 33455555544444568889999999999999877678999999999999999999999999999999999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCC
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
|+|||+|..+..+++++.||++|+||++++|+|+|++++++++++.+.+.....+.+|+++|++++++++++|+.+++++
T Consensus 242 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 321 (427)
T 3fq8_A 242 ITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG 321 (427)
T ss_dssp TTBTTTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT
T ss_pred ccccccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99997777788889999999999999999999999999999999988754456688899999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.++++++++++++.|+++...++.+..+++.|+++++++...+..++.....++.....++.+.|+++||++.+++.+.
T Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r 401 (427)
T 3fq8_A 322 TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA 401 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 99999999999999999988777777788999999999997655555555555666667789999999999999988777
Q ss_pred eEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+++++.+|++++++++++|++++++
T Consensus 402 ~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 402 GFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999875
No 8
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=6.1e-70 Score=550.75 Aligned_cols=405 Identities=32% Similarity=0.522 Sum_probs=357.0
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
+++|+++++++++++|+|+++++|.|.+ +|+++++++|+|+||+|||+||||+++++++++||+||+|++|+.++++
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~---~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~ 130 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRP---FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALA 130 (465)
Confidence 6678999999999999999999988765 4999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (476)
++..++++++...+|+++|++++|+.++++|+|||+||++.|++++|.++++++||+++++|||+++..+ ++
T Consensus 131 ~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg------ 202 (465)
T 2yky_A 131 VGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG------ 202 (465)
Confidence 8766778899999999999999987889999999999999999999999999999999999999988777 22
Q ss_pred CCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
|...+++. .++.+||||+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 203 --~~~~g~~~----~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 276 (465)
T 2yky_A 203 --HAPTNAPY----HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276 (465)
Confidence 11223321 466778999999999998655689999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
+ ||+|.+++++++|+.||++||||++++|+|+||+++++++++.+.+ .+..++.+||++||++|++++++|+.++++
T Consensus 277 ~-~r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~ 355 (465)
T 2yky_A 277 T-SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR 355 (465)
Confidence 9 8888888899999999999999999999999999999999998875 233567889999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
++.+++++++++++++|+++..+++++.++++.|+|++++|.++++.++.....++.....++++.|+++||++.|++++
T Consensus 356 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~ 435 (465)
T 2yky_A 356 QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY 435 (465)
Confidence 89999999999999999998777787788999999999999753333444433444455678899999999999987654
Q ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 448 AGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 448 ~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
. +++.+|++||++++++|+++++++
T Consensus 436 ~--~s~~~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 436 A--LSLEIADAGRDAFAEALADFIGEQ 460 (465)
Confidence 3 788999999999999999998764
No 9
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=6.5e-63 Score=499.89 Aligned_cols=422 Identities=54% Similarity=0.914 Sum_probs=357.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l 128 (476)
++++++++++++++++|+|+++++|.|..++..|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (424)
T 2e7u_A 2 ERPISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETL 81 (424)
T ss_dssp CCHHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHH
Confidence 46688999999999999999999998876666799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCcc
Q 011856 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (476)
+++..++++.+...+|++++++++++.++|+|++||+||++.++++||.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (424)
T 2e7u_A 82 ERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALT 161 (424)
T ss_dssp HTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98766778899999999999999877899999999999999999999989999999999999999988776555442211
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011856 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (476)
...|...+++.....+++.+|++|+++|++.++++++++++|++||+++++|.+.++++|+++|+++ ++||++||+||+
T Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 162 LGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp BCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred cCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 1112222332111235778889999999999975334789999999999999999999999999999 999999999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-C
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P 367 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 367 (476)
|+||++|..++.+++++.||++||||++++|+|+|++++++++++.+.+.....+.+||++|+++++++.++|+.+++ +
T Consensus 241 ~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 320 (424)
T 2e7u_A 241 MTGFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENP 320 (424)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCT
T ss_pred ccccccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999977777788889999999999999999999999999999999887533455778999999999999999998877 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
++.+++++++++++++|+++..+++....+++.|+|+++++......++.....++.....++.+.|+++||++.+++..
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 400 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFE 400 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCC
Confidence 89999999999999999998766776667889999999998642222222222233445568889999999999998766
Q ss_pred ceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 448 AGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 448 ~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
.+++++.+|++++++++++|++++
T Consensus 401 ~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 401 AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ceEeeccCCHHHHHHHHHHHHHhC
Confidence 678899999999999999998763
No 10
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=4.5e-62 Score=495.24 Aligned_cols=424 Identities=41% Similarity=0.718 Sum_probs=354.5
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
.++++++++++++++++|+.+++|.|.. .+|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~ 86 (434)
T 2epj_A 9 GEKSRMLFERTKELFPGGVNSPVRAAVK--PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA 86 (434)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGGCS--SSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCCcCcccccccC--CCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888776521 24999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (476)
++..++++.+...++++++++++++.++|+|++||+||++.|+++||.++++++||+++++|||++..++...+......
T Consensus 87 ~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 87 RGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp TCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------
T ss_pred hCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 87666778999999999999998778999999999999999999998889999999999999999887765544321111
Q ss_pred CCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
..|...+++.....+++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 167 ~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 246 (434)
T 2epj_A 167 GVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVV 246 (434)
T ss_dssp CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcch
Confidence 11222233211123467788999999999997543478999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
+||++|..++.+++++.||++||||++++|+|+|++++++++++.+.+.+...+.+||++|+++++++.++|+.++++++
T Consensus 247 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~ 326 (434)
T 2epj_A 247 TGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPV 326 (434)
T ss_dssp TTTTSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCH
T ss_pred hceeCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCH
Confidence 99977777788889999999999999999999999999999999887533445778999999999999999998877889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
.++++++++++++.|+++..++++...+++.|.|+++++.+.+..++.....++.....++.+.|+++||++.+++...+
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 327 YSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcE
Confidence 99999999999999998866667766788999999999864222222222222334457788999999999999876677
Q ss_pred EEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 450 FTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 450 ~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
++++.+|++++++++++|+++++++.
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988753
No 11
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=2.3e-61 Score=492.00 Aligned_cols=401 Identities=25% Similarity=0.335 Sum_probs=341.6
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
.+.+++++++++.+++++.|+.+. +|+++++++|+|+||.|||+||||+++++++++||+||+|++|+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~ 92 (453)
T 4ffc_A 22 LPGPRSGALAERRRAAVSAGVGST---------APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQ 92 (453)
T ss_dssp SSCHHHHHHHHHHHHHBCTTTCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcCCC---------CCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHH
Confidence 446788999999999999887532 48999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhc
Q 011856 128 MKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 128 l~~~~~~---~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
++++.++ .++.+...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~ 172 (453)
T 4ffc_A 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALT 172 (453)
T ss_dssp HHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHC
T ss_pred HHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhc
Confidence 9986543 3678999999999999997 3689999999999999999999988999999999999999999999887
Q ss_pred CCC-CccCCCCCCCCCCCCCCCceeeccCC----C-------------HHHHHHHHhcCCCCeEEEEEcccCCCCCcccC
Q 011856 203 GSG-VATLGLPDSPGVPKGATYETLTAPFN----D-------------VSALENLFENNKGEIAAIILEPVVGNSGFIAP 264 (476)
Q Consensus 203 g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~ 264 (476)
+.. .....+. .....+..+|++ | ++.|++.+. ++++++||+||+++++|.+.+
T Consensus 173 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~~ 243 (453)
T 4ffc_A 173 AKSMPYKSQFG-------PFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIVP 243 (453)
T ss_dssp CCCTTTTTTSC-------SCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBCC
T ss_pred CCCcccccCCC-------CCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCcccC
Confidence 753 2111110 011123333332 3 244444443 347999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccc
Q 011856 265 KPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 343 (476)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~ 343 (476)
+++||++|+++|++||++||+||+|+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+. +..+
T Consensus 244 ~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~---~~~~ 320 (453)
T 4ffc_A 244 APGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVY---AGGL 320 (453)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTSS
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhc---ccCc
Confidence 9999999999999999999999999999 99988889999999999999999999999999999999999887 3457
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccc
Q 011856 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
.+|+++||++|++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.+.. ...++
T Consensus 321 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~ 394 (453)
T 4ffc_A 321 GGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG------TLEPD 394 (453)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTT------SCCBC
T ss_pred CCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCc------ccCCC
Confidence 889999999999999999988778999999999999999999998888888899999999999996411 12245
Q ss_pred hHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 424 TTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.....++.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|+++++++.
T Consensus 395 ~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 395 AALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999999998764 45565 688999999999999999998753
No 12
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=1.8e-61 Score=492.60 Aligned_cols=402 Identities=22% Similarity=0.302 Sum_probs=342.3
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHH
Q 011856 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (476)
..+.+++++++++.+++++.|+.+. +|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~ 88 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVGTT---------MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRS 88 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhccCCcCCC---------CCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHH
Confidence 3457789999999999999876532 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh
Q 011856 127 TMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 127 ~l~~~~~~---~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
+++++.++ .++.+...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~ 168 (451)
T 3oks_A 89 QVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMAL 168 (451)
T ss_dssp HHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHh
Confidence 99886443 3678899999999999997 468999999999999999999998899999999999999999999988
Q ss_pred cCCC-CccCCCCCCCCCCCCCCCceeeccCC------------------CHHHHHHHHhc--CCCCeEEEEEcccCCCCC
Q 011856 202 AGSG-VATLGLPDSPGVPKGATYETLTAPFN------------------DVSALENLFEN--NKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 202 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l~~--~~~~~a~vi~ep~~~~~G 260 (476)
++.. .....+ ......+..+|++ +++.+++.+++ .++++++||+||+++++|
T Consensus 169 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG 241 (451)
T 3oks_A 169 TAKVMPYKDGF-------GPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGG 241 (451)
T ss_dssp CCCCTTTTTTC-------CSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTT
T ss_pred cCCCcccccCC-------CCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCC
Confidence 7753 211111 0111234444443 24445555543 235799999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~ 339 (476)
.+.++++|+++|+++|++||++||+||+|+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+.
T Consensus 242 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~--- 318 (451)
T 3oks_A 242 FIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPH--- 318 (451)
T ss_dssp CBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSC---
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhc---
Confidence 99999999999999999999999999999999 99988889999999999999999999999999999999999886
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhh
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
+..+.+|+++||+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.+.. .
T Consensus 319 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~ 392 (451)
T 3oks_A 319 VSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG------T 392 (451)
T ss_dssp TTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTT------S
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCc------c
Confidence 3457889999999999999999988778999999999999999999998888888899999999999996411 1
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..++.....++.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|++++++
T Consensus 393 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 224455667899999999999998764 45666 6889999999999999999864
No 13
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=7.4e-61 Score=489.84 Aligned_cols=408 Identities=19% Similarity=0.228 Sum_probs=332.1
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
+.++.++.++++..... ..+.+. ..+|+++++++|+|+||.|||+||||++|++++++||+||+|++|+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 12 TAELQALDAAHHLHPFS-ANNALG--EEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHHHHHEECTTE-EHHHHH--HHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccCCcc-cccccc--cCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 45666666666543221 111111 124899999999999999999999999999999999999999999999999853
Q ss_pred ----CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhh
Q 011856 133 ----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVK 201 (476)
Q Consensus 133 ----~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~ 201 (476)
.+.++++...+|+++|++.+| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~ 168 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSAL 168 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhc
Confidence 224678999999999999998 5789999999999999999999887 47889999999999999999888
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceeeccC----CC-----------HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCC
Q 011856 202 AGSGVATLGLPDSPGVPKGATYETLTAPF----ND-----------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 202 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d-----------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
++.......+....+ ...+.+|+ ++ +++|++++++. ++++++||+||+++++|.+.++
T Consensus 169 ~~~~~~~~~~~~~~~------~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~ 242 (472)
T 3hmu_A 169 GGMAGMHAQSGLIPD------VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242 (472)
T ss_dssp SCCHHHHHTTCCCSS------EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCC
T ss_pred cCChhhccccCCCCC------cEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCC
Confidence 775432211110011 11222222 22 78899988743 2579999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccc
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQ 343 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~ 343 (476)
++||++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+. .....+
T Consensus 243 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~-~~~~~~ 321 (472)
T 3hmu_A 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNH 321 (472)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHT-TSCBCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcc-cCCccc
Confidence 999999999999999999999999999 999888899999999999999999976 89999999999999984 345678
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc
Q 011856 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (476)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (476)
++||++||++|+|++++|+.++++++.++++ ++++++++.|+++ .+++.+.++++.|+|+++++..+.... .. ..+
T Consensus 322 ~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~-~~-~~~ 398 (472)
T 3hmu_A 322 GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASR-AK-FAS 398 (472)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGT-CC-BSS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCcccc-cc-ccc
Confidence 8899999999999999999987789999999 9999999999776 457888899999999999996432110 00 001
Q ss_pred c-hHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 423 E-TTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 423 ~-~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ ......+.+.|+++||++.+.+ ..+|++ +.+|++++++++++|+++++++
T Consensus 399 ~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 399 EPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp CTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 3345678899999999999877 677774 8999999999999999998765
No 14
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=2e-60 Score=487.34 Aligned_cols=407 Identities=19% Similarity=0.241 Sum_probs=333.1
Q ss_pred HHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 54 EEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
..+.++.++++... +..+..+. ..|+++++++|+|+||.|||+||||+++++++++||+||+|++|+.+++++..
T Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~ 87 (476)
T 3i5t_A 12 GAVGAAMRDHILLP----AQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP 87 (476)
T ss_dssp -CHHHHHHHHBCCT----TEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC
T ss_pred hHHHhhcccccccC----cccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 34555555555432 22222222 25899999999999999999999999999999999999999999999999843
Q ss_pred C---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhc
Q 011856 133 S---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 133 ~---~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
. +.++++...+|+++|++.+| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..+
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~ 167 (476)
T 3i5t_A 88 YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACT 167 (476)
T ss_dssp CCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred CcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhcccc
Confidence 2 25788999999999999998 7899999999999999999999988 889999999999999999998887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceeeccC-----CC---------HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCH
Q 011856 203 GSGVATLGL-PDSPGVPKGATYETLTAPF-----ND---------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 203 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~d---------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+.......+ +...+ ...+.+|+ ++ +++||+++++. ++++++||+||+++++|.+.+++
T Consensus 168 ~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~ 241 (476)
T 3i5t_A 168 GRTGNWPNFDIAQDR------ISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPA 241 (476)
T ss_dssp CCGGGCTTSCCCCTT------EEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCT
T ss_pred CChhhccccCCCCCC------cEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCH
Confidence 765432211 11111 11222333 22 78999998753 25799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cccccchhh-ccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----C
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----G 339 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~-~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~ 339 (476)
+||++|+++|++||++||+||||+|| |+|.+++.+ ++++.||++||||++++| +|+|++++++++++.+.+. +
T Consensus 242 ~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~ 321 (476)
T 3i5t_A 242 GYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGS 321 (476)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTC
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccc
Confidence 99999999999999999999999999 999888888 999999999999999999 8999999999999988742 2
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhh
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
.+.+++||++||++|+|++++|+.++++++.++++++++++++.|+++ .+++.+..+++.|+|+++++.++..... .
T Consensus 322 ~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v~~~G~~~~i~~~~~~~~~~-~- 398 (476)
T 3i5t_A 322 WFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAETRSVGLVGCVQCLLDPTRAD-G- 398 (476)
T ss_dssp EECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCC------C-
T ss_pred cccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceeEEEEecCccccc-c-
Confidence 246778999999999999999999887899999999999999999965 3678888999999999999865321100 0
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++......+.+.|+++||++.+.+ ..+|++ +++|+++|++++++|+++++++
T Consensus 399 ~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 399 TAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp CHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00112235678899999999999876 677875 8999999999999999998765
No 15
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=5.1e-59 Score=475.21 Aligned_cols=412 Identities=21% Similarity=0.267 Sum_probs=339.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.+++++.++.++++.... +.|.. .+|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~--~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 80 (452)
T 3n5m_A 7 KQTDELLAKDEQYVWHGM----RPFSP--NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80 (452)
T ss_dssp HHHHHHHHHHHHHBCCTT----SCSCG--GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhhhhccccc----ccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh
Confidence 456778888888876532 11211 248999999999999999999999999999999999999999999999988
Q ss_pred cCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc---c---CCceEEEEeCCCCCCchhHHhhc
Q 011856 131 GTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKA 202 (476)
Q Consensus 131 ~~~--~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~---~---~~~~ii~~~~~yhg~~~~~~~~~ 202 (476)
+.. .+++++...+|++++++.++....|+|++||+||++.|+++++.+ + ++++||+++++|||++...+..+
T Consensus 81 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~ 160 (452)
T 3n5m_A 81 LSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAAT 160 (452)
T ss_dssp CCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSC
T ss_pred cCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcC
Confidence 532 356789999999999999873323999999999999999998866 6 78999999999999998888887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceeeccCCC---------HHHHHHHHh-cCCCCeEEEEEccc-CCCCCcccCCHHHHH
Q 011856 203 GSGVATLGL-PDSPGVPKGATYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPV-VGNSGFIAPKPDFLN 270 (476)
Q Consensus 203 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d---------~~~le~~l~-~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~ 270 (476)
+.......+ |...++........+.+++|| +++||+.++ .+++++++|++||+ +| +|.+.|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~ 239 (452)
T 3n5m_A 161 GQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMK 239 (452)
T ss_dssp CCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHH
T ss_pred CchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHH
Confidence 765432211 222222111222334456677 999999997 44457999999999 88 999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC---CCCccccC
Q 011856 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP---AGPMYQAG 345 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~---~~~~~~~~ 345 (476)
+|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+.+ .+...+++
T Consensus 240 ~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (452)
T 3n5m_A 240 AVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHIN 319 (452)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCC
T ss_pred HHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccC
Confidence 9999999999999999999999 999888899999999999999999999 999999999999999864 34556788
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
|+++||+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|.|+++++..+.... ..-+..
T Consensus 320 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~----~~~~~~ 395 (452)
T 3n5m_A 320 TFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK----EPIDND 395 (452)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTT----EECCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCccc----CCCCHH
Confidence 9999999999999999988778999999999999999999987788888889999999999986432110 000123
Q ss_pred HHHHHHHHHHHCCeEeccCC------CcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 426 KFARFYRGMLEEGVYFAPSQ------FEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~------~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...++.+.|+++||++.+.+ ...+|+ ++.+|+++|++++++|++++++
T Consensus 396 ~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 396 KIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 44678899999999999876 356777 5899999999999999999865
No 16
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=5.2e-59 Score=474.53 Aligned_cols=395 Identities=24% Similarity=0.338 Sum_probs=329.0
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEc-CCC--EEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI-DGN--EYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~-dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
.+++.++.++++...... +......|+++++++|+|+||. ||| +||||+++++++++||+||+|.+|+.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~ 105 (457)
T 3tfu_A 30 PEQIIAVDGAHLWHPYSS----IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR 105 (457)
T ss_dssp HHHHHHHHHHHBCCTTCC----SSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccc----ccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH
Confidence 466777777776543321 1001224899999999999999 999 999999999999999999999999999998
Q ss_pred hcCC---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHH
Q 011856 130 KGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~---~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+..+ ..++.+...+|+++|++.++ +.++|+|+|||+||++.|+++++.+ +++++||.++++|||++..++
T Consensus 106 ~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 106 VMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp HCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH
T ss_pred hccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhh
Confidence 8543 23578899999999999998 6789999999999999999999887 788899999999999998888
Q ss_pred hhcC-CCCccCCC-CCCCCCCCCCCCceeecc-------CCCHHHHHHHHhcCCCCeEEEEEcc-cCCCCCcccCCHHHH
Q 011856 200 VKAG-SGVATLGL-PDSPGVPKGATYETLTAP-------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFL 269 (476)
Q Consensus 200 ~~~g-~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l 269 (476)
..++ .......+ +...+ ...++ ++|+++|+++++++++++++|++|| +++++|.+.++++||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l 257 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAA--------QVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYL 257 (457)
T ss_dssp TTSCCC----------CCC--------CEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHH
T ss_pred cccCCcccccccccCCCCC--------ceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHH
Confidence 7743 21111101 11111 22222 2589999999986555899999999 999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhc--CCCCccccC
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAG 345 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~--~~~~~~~~~ 345 (476)
++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+. +.+...+++
T Consensus 258 ~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~ 337 (457)
T 3tfu_A 258 HDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGP 337 (457)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCC
T ss_pred HHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEec
Confidence 99999999999999999999999 999988999999999999999999988 69999999999999885 233456889
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchH
Q 011856 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (476)
||++||++|++++++|+.++++++.+++++++++++++|+++. +++.+..+++.|+|+++++.++. +
T Consensus 338 t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~----------~-- 404 (457)
T 3tfu_A 338 TFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV----------D-- 404 (457)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC----------C--
T ss_pred CCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc----------c--
Confidence 9999999999999999999888999999999999999999875 56777789999999999985421 1
Q ss_pred HHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 426 KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 426 ~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..++.+.|+++||++.+.+ ..+|+ ++.+|++|+++++++|+++++++
T Consensus 405 -~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 405 -LAVATPAALDRGVWLRPFR-NLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp -HHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999875 45676 47899999999999999998764
No 17
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=6e-59 Score=474.81 Aligned_cols=416 Identities=31% Similarity=0.486 Sum_probs=324.4
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
+++++++++++++++|+|++++.|.|.+ +|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~ 87 (453)
T 2cy8_A 11 TEGSVFWAQRARSVMPDGVTADTRAFDP---HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS 87 (453)
T ss_dssp CHHHHHHHHHHHHHSCCC------CCSS---CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHhhcCCCCCccccccCC---CCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHH
Confidence 6788999999999999999888777653 4899999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccC
Q 011856 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (476)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (476)
++..++++.+++.++++++++.+++.++|+|++||+||++.|+++||.++++++||+++++|||++...+...+...
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--- 164 (453)
T 2cy8_A 88 HGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHF--- 164 (453)
T ss_dssp TTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC--------------------
T ss_pred hCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCcc---
Confidence 87667789999999999999998778999999999999999999988888999999999999998887665443200
Q ss_pred CCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
..+...+++.....+++.++++|+++|++.++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 165 DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 00111233222233577888899999999997543478999999999888999999999999999999999999999999
Q ss_pred cCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHH-hcC
Q 011856 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKR-LKE 366 (476)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~-~~~ 366 (476)
+||+.|..+..+++++.||++|+||++++|+|+|++++++++++.+... ....+.+|+++||++++++.++|+. + .
T Consensus 245 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~ 323 (453)
T 2cy8_A 245 SGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E 323 (453)
T ss_dssp TTTTTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H
T ss_pred cccccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h
Confidence 9997677777888999999999999999999999999999999988641 2234677999999999999999998 7 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEec-----C-CCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
+++.+++++++++++++|+++..+++....+++.|.|+++++.. . ...++.....++.....++.+.|+++||+
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~ 403 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVD 403 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeE
Confidence 78999999999999999998866667766788999999999853 1 00011011112233456788999999999
Q ss_pred eccCCCcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 441 FAPSQFEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 441 ~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+.+ .+++++.++++++++++++|+++++++
T Consensus 404 v~~~~--~~~l~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 404 IGGRG--SVFLSAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp CBTTT--EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCC--CEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 97653 367789999999999999999998764
No 18
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=2.6e-58 Score=470.76 Aligned_cols=389 Identities=19% Similarity=0.237 Sum_probs=325.8
Q ss_pred CCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCC-
Q 011856 79 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP- 153 (476)
Q Consensus 79 ~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~~~~~~~~la~~l~~~~~- 153 (476)
.++|+++++++|+|+||.||++||||+++++++++||+||+|++|+.++++++. ..+++++...+|+++|++.++
T Consensus 31 ~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 110 (460)
T 3gju_A 31 ESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPK 110 (460)
T ss_dssp CSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCT
T ss_pred CCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCC
Confidence 445799999999999999999999999999999999999999999999998743 235678899999999999987
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCcee
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETL 226 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 226 (476)
+.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ +...++ ..+
T Consensus 111 ~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 184 (460)
T 3gju_A 111 GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPV------LHT 184 (460)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTE------EEE
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCC------EEe
Confidence 6789999999999999999999876 678999999999999999998887764432211 111111 112
Q ss_pred eccC----CC------------HHHHHHHHhc-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011856 227 TAPF----ND------------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (476)
Q Consensus 227 ~~~~----~d------------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (476)
.+|+ +| +++||+++++ .++++++|++||+++++|.+.++++||++|+++|++||++||+||||
T Consensus 185 ~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 264 (460)
T 3gju_A 185 EAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVV 264 (460)
T ss_dssp CCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 2222 33 6899998874 23479999999999999999999999999999999999999999999
Q ss_pred cCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC----CCccccCCCCCcHHHHHHHHHHHHH
Q 011856 290 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKR 363 (476)
Q Consensus 290 ~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~ 363 (476)
+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+... ....+.+||++||++|++++++|+.
T Consensus 265 ~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~ 344 (460)
T 3gju_A 265 TGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLEL 344 (460)
T ss_dssp TTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHH
T ss_pred cCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 999 999888889999999999999999988 7999999999999988521 2556788999999999999999998
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc
Q 011856 364 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~ 443 (476)
++++++.++++++.++++++|.+...+++.+..+++.|.|+++++..+..... ...++.....++.+.|+++||++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gv~v~~ 422 (460)
T 3gju_A 345 IDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRV--FFDASQKIGPQVATALAASGVIGRA 422 (460)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECEE
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccc--cccchHHHHHHHHHHHHHCCeEEec
Confidence 87789999999999999999988877888888999999999999974321110 0012223456788999999999998
Q ss_pred CCC-cceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 444 SQF-EAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 444 ~~~-~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+. ..+|++ +.+|++++++++++|+++++++.
T Consensus 423 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 423 MPQGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 753 567775 89999999999999999998764
No 19
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=2.1e-58 Score=470.04 Aligned_cols=405 Identities=23% Similarity=0.288 Sum_probs=315.7
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC-
Q 011856 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS- 133 (476)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~- 133 (476)
++.++.++++.... ..++.+...|+++++|+|+|+||.||++||||.++++++++||+||+|.+|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~ 79 (448)
T 3dod_A 4 DLIEKSKKHLWLPF----TQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS 79 (448)
T ss_dssp HHHHHHHHHBCCTT----CCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCC
T ss_pred HHHHhhhhcccccc----cccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCc
Confidence 45556666664322 2222222358999999999999999999999999999999999999999999999988632
Q ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc---cC---CceEEEEeCCCCCCchhHHhhcCC
Q 011856 134 --FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG---RERIIKFEGCYHGHADPFLVKAGS 204 (476)
Q Consensus 134 --~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~---~~---~~~ii~~~~~yhg~~~~~~~~~g~ 204 (476)
.+++.+...+|++++++.++ +.++|+|+|||+||++.|+++++.+ ++ +++||+++++|||++...+..++.
T Consensus 80 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 80 TLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp CCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC----------------
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence 34677899999999999997 6789999999999999999999887 77 899999999999999888877665
Q ss_pred CCccCCC-CCCCCCCCCCCCceeeccC----------------CCHHHHHHHHhcCCCCeEEEEEcccC-CCCCcccCCH
Q 011856 205 GVATLGL-PDSPGVPKGATYETLTAPF----------------NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKP 266 (476)
Q Consensus 205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------~d~~~le~~l~~~~~~~a~vi~ep~~-~~~G~i~~~~ 266 (476)
......+ |... .+..+|+ +|+++||++++++++++++|++||++ +++|.+.+++
T Consensus 160 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~ 231 (448)
T 3dod_A 160 ELFHHVYGPLMF--------ESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPE 231 (448)
T ss_dssp ---------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCT
T ss_pred ccccccccCCCC--------CceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCH
Confidence 3322111 1111 1222222 35899999998544579999999999 9999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC----CCC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGP 340 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~----~~~ 340 (476)
+|+++|+++|++||++||+||+|+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+.+ ...
T Consensus 232 ~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~ 311 (448)
T 3dod_A 232 GYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKT 311 (448)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCc
Confidence 99999999999999999999999999 999888889999999999999999999 599999999999998863 123
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhc
Q 011856 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (476)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (476)
..+.+|+++||+++++++++|+.++++++.++++++.+++++.|++ ...++.+..+++.|.|+++++..+..... ..
T Consensus 312 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~- 388 (448)
T 3dod_A 312 FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKE-PY- 388 (448)
T ss_dssp CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTB-CC-
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCccccc-cc-
Confidence 5678899999999999999999887789999999999999999999 66778888899999999999964321100 00
Q ss_pred ccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
........++.+.|+++||++.|.+ ..+|+ ++.+|+++|++++++|+++++++.
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 0011123578899999999999876 67787 789999999999999999998753
No 20
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=5.9e-58 Score=468.03 Aligned_cols=385 Identities=20% Similarity=0.273 Sum_probs=320.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCC-CC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.++++++. .+.++++...+|++++++.++ +.
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999999999999999999999998843 224678999999999999998 68
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeec
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 228 (476)
++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ +...+ ...+.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 185 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPG------MAHIEQ 185 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSS------EEEECC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCC------CEEeCC
Confidence 99999999999999999998876 478999999999999999988887764432111 11111 112222
Q ss_pred cC----C---C--------HHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 229 PF----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 229 ~~----~---d--------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
|+ + | +++||+++++. ++++++|++||+++++|.+.++++||++|+++|++||++||+||||+||
T Consensus 186 p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 265 (459)
T 4a6r_A 186 PWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGF 265 (459)
T ss_dssp CCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 33 2 2 78899988742 2478999999999999999999999999999999999999999999999
Q ss_pred -cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
|+|.+++.+++++.||++||||++++| +|+|++++++++++.+.......+.+||++||+++++++++|+.++++++.
T Consensus 266 gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 345 (459)
T 4a6r_A 266 GRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIV 345 (459)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred CcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHH
Confidence 999888889999999999999999977 899999999999998863234557789999999999999999988778999
Q ss_pred HHHH-HHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 371 EYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 371 ~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
++++ ++++++++.|.+...+++.+..+++.|+|+++++..+.... ....++.....++.+.|+++||++.+.+ ..+
T Consensus 346 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~i 422 (459)
T 4a6r_A 346 QRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR--ELFPDFGEIGTLCRDIFFRNNLIMRACG-DHI 422 (459)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTT--BCCSSTTHHHHHHHHHHHHTTEECEEET-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccc--ccccchHHHHHHHHHHHHHCCeEEecCC-CEE
Confidence 9999 99999999995444567788899999999999986432110 0011234456788899999999999976 677
Q ss_pred EEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 450 FTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 450 ~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|++ +.+|++++++++++|+++++++
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 775 8999999999999999998765
No 21
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=8.8e-59 Score=498.97 Aligned_cols=413 Identities=18% Similarity=0.252 Sum_probs=321.6
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCC--EEEEcCCC----EEEecccChhhccCCCC-cHHHHHHHH
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS--HMWDIDGN----EYIDYVGSWGPAIIGHA-DDQVLAALG 125 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lG~~-~p~v~~a~~ 125 (476)
.+++.++.++++..... ..+.+.. ..|+++++++|. |+||.||| +|||++++|+++++||+ ||+|.+|+.
T Consensus 331 l~~~~~~~~~~~whp~t-~~~~~~~--~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~ 407 (831)
T 4a0g_A 331 LNGMAKLAGEVFWWPFT-QHKLVHQ--ETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407 (831)
T ss_dssp HHHHHHHHHHHBCCTTC-CGGGCCG--GGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccCCcc-CcccccC--CCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHH
Confidence 34555666666654332 1222221 138899999995 99999999 99999999999999999 999999999
Q ss_pred HHHHhcCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHH-Hhcc--------------CCceEE
Q 011856 126 ETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--------------GRERII 185 (476)
Q Consensus 126 ~~l~~~~~~---~~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~a-r~~~--------------~~~~ii 185 (476)
+|+++..+. ++.++...+|+++|++..| + .++|+|+|||+|||+.|||+| |.++ ++.+||
T Consensus 408 ~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI 487 (831)
T 4a0g_A 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVI 487 (831)
T ss_dssp HHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEE
T ss_pred HHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEE
Confidence 999985432 4568899999999999998 3 689999999999999999999 5553 467899
Q ss_pred EEeCCCCCCchhHHhhcCCCCccCC--CCCCCCC----CCC-----CCCceeecc------------CCC----------
Q 011856 186 KFEGCYHGHADPFLVKAGSGVATLG--LPDSPGV----PKG-----ATYETLTAP------------FND---------- 232 (476)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~--~~~~~~~----~~~-----~~~~~~~~~------------~~d---------- 232 (476)
.++++|||.+.+++..++....... .+...+. +.. .....+.+| |++
T Consensus 488 ~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (831)
T 4a0g_A 488 ALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRD 567 (831)
T ss_dssp EETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGG
T ss_pred EecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhccccc
Confidence 9999999999999999886543220 0111000 000 000011122 233
Q ss_pred --------HHHHHHHHhc-----CCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc
Q 011856 233 --------VSALENLFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (476)
Q Consensus 233 --------~~~le~~l~~-----~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (476)
.++|++.|++ +++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+
T Consensus 568 ~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~ 647 (831)
T 4a0g_A 568 ASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVE 647 (831)
T ss_dssp GSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBS
T ss_pred chhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCc
Confidence 2567887763 3568999999997 8999999999999999999999999999999999999 99999
Q ss_pred chhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCC---CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHH
Q 011856 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373 (476)
Q Consensus 298 ~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 373 (476)
|+++++|+.||++||||++++| +|+|++++++++++.+.+.. .+.|++||++||++|++++++|+.++++++.+++
T Consensus 648 fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~ 727 (831)
T 4a0g_A 648 TTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNI 727 (831)
T ss_dssp STHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTB
T ss_pred hhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999 79999999999999987532 3568899999999999999999999887788888
Q ss_pred HHHHHHHHH----HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcce
Q 011856 374 NKITGELTQ----GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (476)
Q Consensus 374 ~~~~~~l~~----~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~ 449 (476)
+++++++++ .+.+...+++.+.++++.|+|+++++..+... ..++.....++.+.|+++||++.|.+ +.+
T Consensus 728 ~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~l 801 (831)
T 4a0g_A 728 TSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLIMLREDGIFTRPLG-NVI 801 (831)
T ss_dssp CTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHHHTTEECCCBT-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHHHHHHCCcEEEecC-CEE
Confidence 777666543 45455566788999999999999999753211 01233455778899999999999876 456
Q ss_pred EE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 450 FT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 450 ~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++ ++.+|++||++++++|+++++++
T Consensus 802 rl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 802 YLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 65 58999999999999999998764
No 22
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=5.8e-56 Score=449.66 Aligned_cols=390 Identities=21% Similarity=0.312 Sum_probs=314.8
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
++++++++++.++++..+.. ..|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~ 95 (433)
T 1z7d_A 26 LKTPEDYINNELKYGAHNYD----------PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAK 95 (433)
T ss_dssp -CCHHHHHHHHHHHBCCCCC----------CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhcccccC----------CCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHH
Confidence 34577888888887765321 13889999999999999999999999999889999999999999999998
Q ss_pred hcCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHH
Q 011856 130 KGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~--~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
++.. ..++.+...+|++++++.+ +.++|+|++||+||++.|+++++.+ +++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~ 174 (433)
T 1z7d_A 96 NLTICSRAFFSVPLGICERYLTNLL-GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCI 174 (433)
T ss_dssp TCSCCCTTSEEHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------
T ss_pred hCCCccCCcCCHHHHHHHHHHHhhc-CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhh
Confidence 7532 2356788899999999988 5799999999999999999998753 245899999999999987776
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...+.......+ . .....+..+|++|+++|+++++. +++++|++||+++++|.+.++++++++|+++|++|
T Consensus 175 ~~~g~~~~~~~~--~-----p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 175 SASTTKKCTSNF--G-----PFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ------------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred cccCCccccccC--C-----CCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 655532111000 0 01124677889999999999962 37899999999999999988999999999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
|++||+||+|+|| |+|.+++++++++.||++||||++++| +|+|++++++++++.+.+ ..+.+||++||++++++
T Consensus 246 g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 322 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP---GEHGSTYGGNPLAASIC 322 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT---TCCCCTTTTCHHHHHHH
T ss_pred CCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc---ccccccCCCCHHHHHHH
Confidence 9999999999999 888888888899999999999999999 899999999999988763 34678999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
.++|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++.... ....++.+.|+++
T Consensus 323 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~l~~~ 390 (433)
T 1z7d_A 323 VEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL------------VNVLDICLKLKEN 390 (433)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT------------CCHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh------------hHHHHHHHHHHHC
Confidence 9999988777899999999999999999875566766778899999999985321 0125788899999
Q ss_pred CeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 438 Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
||++.+.+...+|+ ++.+|++|+++++++|+++++++
T Consensus 391 Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 391 GLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999876567777 56789999999999999998765
No 23
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=1.1e-55 Score=448.27 Aligned_cols=388 Identities=23% Similarity=0.342 Sum_probs=323.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH
Q 011856 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (476)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~ 129 (476)
..++++++++.++++..... ..|+++.+++|+++||.||++||||.+++++.++||+||+|.+|+.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~ 106 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHNYH----------PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD 106 (439)
T ss_dssp CCCHHHHHHHHHHHBCCCCC----------CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccccC----------CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHH
Confidence 44578888888877754321 24899999999999999999999999999889999999999999999998
Q ss_pred hcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHH
Q 011856 130 KGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 130 ~~~~~--~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (476)
++..+ .++.+...++++++++.+ +.++++|++||+||++.++++++.+ .++++||+++++|||++...+
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~ 185 (439)
T 2oat_A 107 KLTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185 (439)
T ss_dssp TCSCCCTTSEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHH
T ss_pred hcCcccCccCCHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHh
Confidence 75322 245667789999999888 5799999999999999999998753 245899999999999988777
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...+.......+ . .....+..+|++|+++|++.++. +++++|++||+++++|.+.++++++++|+++|++|
T Consensus 186 ~~~g~~~~~~~~--~-----p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 256 (439)
T 2oat_A 186 SSSTDPTSYDGF--G-----PFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH 256 (439)
T ss_dssp TTCCCHHHHTTS--C-----SCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT
T ss_pred hcCCChhcccCC--C-----CCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 665532211111 0 01124677889999999999963 37899999999999999999999999999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
|++||+||+|+|| |+|.+++++++++.||++|+||++++| +|+|++++++++++.+.+ ..+.+||++||++++++
T Consensus 257 gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 333 (439)
T 2oat_A 257 QVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP---GEHGSTYGGNPLGCRVA 333 (439)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT---TSSCCSSTTCHHHHHHH
T ss_pred CCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCC---CCcccCCCcCHHHHHHH
Confidence 9999999999999 888888888999999999999999999 999999999999988763 44678999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
.++|+.++++++.++++++++++++.|+++ .++.+..+++.|+|+++++.... . ....++.+.|+++
T Consensus 334 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~--~---------~~~~~l~~~l~~~ 400 (439)
T 2oat_A 334 IAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETK--D---------WDAWKVCLRLRDN 400 (439)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCS--S---------CCHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCc--c---------HHHHHHHHHHHHC
Confidence 999998877889999999999999999876 35556678899999999985421 0 0125788899999
Q ss_pred CeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHH
Q 011856 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 438 Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
||++.+.+...+|+ ++.+|++|+++++++|++++++
T Consensus 401 Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 401 GLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp TEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 99999876667787 6789999999999999999875
No 24
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=2.1e-55 Score=446.92 Aligned_cols=397 Identities=21% Similarity=0.299 Sum_probs=333.3
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC
Q 011856 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (476)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~ 132 (476)
.++++++++++++.|+.++ +|+++++++|+++||.||++||||.++++++++||+||+|.+++.+++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 76 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLRF---------FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA 76 (439)
T ss_dssp CCHHHHHHHHBCGGGCCCS---------SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhccCccCCC---------CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 3668899999999887542 4899999999999999999999999999999999999999999999998864
Q ss_pred CC---CCCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC-
Q 011856 133 SF---GAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (476)
Q Consensus 133 ~~---~~~~~~~~~la~~l~~~~~-~~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (476)
++ .++.+...++++++++.++ +. ++++|++||++|++.++++++.++++++||+++++|||.+..++..++...
T Consensus 77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 156 (439)
T 3dxv_A 77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ 156 (439)
T ss_dssp CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence 33 3578899999999999997 56 799999999999999999988888999999999999999988887766532
Q ss_pred -ccCCCCCCCCCCCCCCCceeeccCC----------CHHHHHHHHh-cCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 207 -ATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
....+. .....+..+|++ |+++|+++++ .+++++++|++||+++++|.+.++++|+++|++
T Consensus 157 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~ 229 (439)
T 3dxv_A 157 ADAAKAD-------GLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFAD 229 (439)
T ss_dssp --------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred hhccccC-------CCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence 111000 001112334444 6899999994 444579999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHH
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
+|++||++||+||+|+|| ++|.++..+++++.||++||||++++|+|+||+++++++++.+.+ ..+.+|+ +|+++
T Consensus 230 l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~t~-~~~~~ 305 (439)
T 3dxv_A 230 ICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA---FAMQTLH-GNPIS 305 (439)
T ss_dssp HHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSS---SSCCTTT-TCHHH
T ss_pred HHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcC---CCcCCCc-ccHHH
Confidence 999999999999999999 888878888999999999999999999999999999999988873 3467788 99999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 354 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
+++++++|+.++++++.++++++.+++++.|+++...++.+..+++.|.|+++++...... ..++.....++.+.
T Consensus 306 ~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 380 (439)
T 3dxv_A 306 AAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQS-----REPARAETAKLIYR 380 (439)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCCHHHHHHHHHH
Confidence 9999999998877889999999999999999998878888888999999999998643211 12344556788999
Q ss_pred HHHCCeEeccCCC--cceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 434 MLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 434 l~~~Gv~~~~~~~--~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
|+++||++.+++. ..+|+ ++.+|++++++++++|+++++++
T Consensus 381 l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 381 AYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred HHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 56777 57889999999999999998765
No 25
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=2.2e-54 Score=438.61 Aligned_cols=410 Identities=22% Similarity=0.295 Sum_probs=329.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHh
Q 011856 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~ 130 (476)
.++++++++.+++++.+... + .|+++.+++|+++||.||++||||.+++++.++||+||+|.+|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 74 (433)
T 1zod_A 4 NDDATFWRNARHHLVRYGGT----F-----EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK 74 (433)
T ss_dssp TTCHHHHHHHHHHCCCCSSC----C-----CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhcccccc----c-----CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence 45678888888888754421 1 38889999999999999999999999998889999999999999999987
Q ss_pred cC--CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCc
Q 011856 131 GT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (476)
Q Consensus 131 ~~--~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (476)
+. ..+++.+...++++++++.++ +.++|+|++||+||++.++++++.++++++||+++++|||.+...+..++....
T Consensus 75 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 154 (433)
T 1zod_A 75 LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 154 (433)
T ss_dssp CCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCC
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccc
Confidence 52 246778889999999999997 689999999999999999998877788889999999999999888876654221
Q ss_pred cCCCCCCCCCCCCCCCceeeccCC---------CHHHHHHHHhcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 208 TLGLPDSPGVPKGATYETLTAPFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
....+...++........+..+++ |+++|++.++++ ++++++|++||+++++|.+.++++|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 234 (433)
T 1zod_A 155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE 234 (433)
T ss_dssp SSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred cccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 100011111100000001112344 389999999752 2478999999999989988889999999999999
Q ss_pred HhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHH
Q 011856 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (476)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aa 356 (476)
+||++||+||+|+|| ++|..++.+++++.||++|+||++++|+|+||+++++++++.+.+. ...+.+|+++|++++++
T Consensus 235 ~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~a 313 (433)
T 1zod_A 235 ARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHEL-GYLFYTTHVSDPLPAAV 313 (433)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHT-TCCCCCTTTTCHHHHHH
T ss_pred HhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccC-CCCCCCCCCcCHHHHHH
Confidence 999999999999999 8887777788899999999999999999999999999999888642 23345789999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH
Q 011856 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (476)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (476)
+.++|+.++++++.+++++++++++++|+++..+++.+..+++.|.|+++++...... ..++.....++.+.|++
T Consensus 314 ~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~ 388 (433)
T 1zod_A 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMN 388 (433)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCChHHHHHHHHHHHH
Confidence 9999998877889999999999999999988666776677889999999988642100 01112234678889999
Q ss_pred CCeEeccCCC----cceEE--eCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 437 EGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 437 ~Gv~~~~~~~----~~~~~--~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+||++.+++. ..+|+ ++.+|++++++++++|++++++++
T Consensus 389 ~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~~ 433 (433)
T 1zod_A 389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL 433 (433)
T ss_dssp TTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999998752 45777 568999999999999999988753
No 26
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.8e-54 Score=433.90 Aligned_cols=367 Identities=24% Similarity=0.276 Sum_probs=320.5
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
..|+++.+++|+++||.||++||||.++++++++||+||+|.+|+.++++++.+ ..++.+...++++++++.+ +.++
T Consensus 17 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~~ 95 (395)
T 3nx3_A 17 RFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKAS-ALER 95 (395)
T ss_dssp SCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHH-TCSE
T ss_pred CCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-CCCe
Confidence 458999999999999999999999999999999999999999999999987532 2357889999999999988 4789
Q ss_pred EEEeCCHHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
++|++||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ .....++..++++|
T Consensus 96 v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d 168 (395)
T 3nx3_A 96 VFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPF-------KPLISGVKFAKYND 168 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGG-------CSCCSCEEEECTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCccccccc-------CCCCCCcEEeCCCC
Confidence 999999999999999988777 678999999999999998888776643222111 01123477889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
+++|++.++ +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+++++.||++|
T Consensus 169 ~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t 245 (395)
T 3nx3_A 169 ISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT 245 (395)
T ss_dssp HHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE
Confidence 999999986 378999999999999999999999999999999999999999999999 8888888889999999999
Q ss_pred hhhhcCCCCcEEEEEecHHH-HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 312 LGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i-~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+||++++|+|+|++++++++ ++.+. +..+.+|+++|+++++++.++|+.++++++.++++++.+++++.|+++..+
T Consensus 246 ~sK~~~~G~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 246 SAKALGCGLSVGAFVINQKVASNSLE---AGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp ECGGGTTTSCCEEEEECHHHHHHHSC---TTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCceEEEEEchhhhhhhcC---CcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 88886 345678899999999999999998877899999999999999999998877
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~ 468 (476)
++.+..+++.|.++++++.+.. ...++.+.|+++||++.+++...+|+ ++.+|++++++++++|+
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSV-------------KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeEEEEEEEEeCCcc-------------hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8877788999999999985421 13578889999999999987777888 57889999999999999
Q ss_pred HHHHH
Q 011856 469 KVKMR 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+++++
T Consensus 390 ~~l~~ 394 (395)
T 3nx3_A 390 KALKS 394 (395)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
No 27
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=4.2e-54 Score=436.11 Aligned_cols=385 Identities=22% Similarity=0.283 Sum_probs=304.0
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CC
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SI 155 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~~ 155 (476)
.+|+++.+++|+++||.||++||||.++++++++||+||+|++|+.+++++... ..++.+...+|++++++.++ +.
T Consensus 10 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 89 (430)
T 3i4j_A 10 KPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPT 89 (430)
T ss_dssp SCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTT
T ss_pred CCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999988542 24678899999999999997 67
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc
Q 011856 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (476)
++|+|+|||+||++.++++++.+ +++++||+++++|||++..++...+........ .+.. ...++..+|
T Consensus 90 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~ 164 (430)
T 3i4j_A 90 FRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY--TPLM---RPEAWPKLP 164 (430)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC------------------------------CGGGSCEEC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc--CCcC---CCCCceEcC
Confidence 89999999999999999998776 788999999999999988777666543222111 0000 000234445
Q ss_pred CC--------CHHHHHHHHhcCC-CCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc
Q 011856 230 FN--------DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (476)
Q Consensus 230 ~~--------d~~~le~~l~~~~-~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (476)
++ |+++||+++++.. +++++|++||+++ ++|.+.++++|+++|+++|++||++||+||+|+|| ++|.++
T Consensus 165 ~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~ 244 (430)
T 3i4j_A 165 KPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL 244 (430)
T ss_dssp CCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred CCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh
Confidence 44 4589999997532 4789999999999 99999999999999999999999999999999999 998888
Q ss_pred hhhcc-CCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 011856 299 AQEYF-GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (476)
Q Consensus 299 ~~~~~-g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (476)
+.+++ ++.||++||||++++| +|+||+++++++++.+.+. +.+.+.+|+++|++++++++++|+.++++++.+++++
T Consensus 245 ~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 324 (430)
T 3i4j_A 245 ALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKE 324 (430)
T ss_dssp GGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88999 9999999999999999 9999999999999988642 1245778999999999999999998877889999999
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhccc-c-hHHHHHHHHHHHHCCeEeccC-------CC
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-E-TTKFARFYRGMLEEGVYFAPS-------QF 446 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~Gv~~~~~-------~~ 446 (476)
+.+++++.|+++..+++.+..+++.|.|+++++.+.... .+ + .....++.+.|+++||++.++ +.
T Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~ 398 (430)
T 3i4j_A 325 RGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATG------QAFETPGIASRIGAAALKRGLITYPGSGAEPNGRG 398 (430)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------------CHHHHHHHHHHTTEECC-----------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecccccc------CCCccHHHHHHHHHHHHhCCCEEEecccccCCCCC
Confidence 999999999998877888888999999999998531100 00 0 112357889999999999987 23
Q ss_pred cceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 447 EAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 447 ~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..+|++ +.+|++++++++++|++++++++
T Consensus 399 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 399 DHLLLGPPLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456764 56999999999999999998764
No 28
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=2e-54 Score=442.43 Aligned_cols=395 Identities=17% Similarity=0.228 Sum_probs=310.9
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHH
Q 011856 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (476)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (476)
...+++++++++++++++.. ..+ +|+++.+++|+|+||.|||+||||+++++++++||+||+|++|+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~ 91 (472)
T 1ohv_A 22 VPGPRSRELMKQLNIIQNAE---AVH-------FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQP 91 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCT---TCC-------CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCG
T ss_pred CCCccHHHHHHHHHhhhccc---ccc-------CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHH
Confidence 34567889999999987542 111 36778999999999999999999999999999999999999999998
Q ss_pred HHh-----cCCCCC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-----------c---------
Q 011856 128 MKK-----GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T--------- 179 (476)
Q Consensus 128 l~~-----~~~~~~--~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-----------~--------- 179 (476)
+.. ...++. ..+++.+++++|++.++ +.++|+|+|||+||++.|+++++.+ |
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~ 171 (472)
T 1ohv_A 92 QNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMI 171 (472)
T ss_dssp GGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccc
Confidence 643 122322 35778888888888776 6889999999999999999999743 2
Q ss_pred ----C--CceEEEEeCCCCCCchhHHhhcCCCCc-cCCCCCCC----CCCCCCCCceeeccCC------CHHHHHHHHhc
Q 011856 180 ----G--RERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDSP----GVPKGATYETLTAPFN------DVSALENLFEN 242 (476)
Q Consensus 180 ----~--~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~------d~~~le~~l~~ 242 (476)
+ +++||+++++|||++..++..++.... ....+... .++.........+++| |+++|++++++
T Consensus 172 ~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 251 (472)
T 1ohv_A 172 NQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVK 251 (472)
T ss_dssp TCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHh
Confidence 3 589999999999999999888775422 11111100 0110000000011133 68899999975
Q ss_pred CCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCC--Cchhhhhhh-
Q 011856 243 NKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKI- 315 (476)
Q Consensus 243 ~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pDi~t~sK~- 315 (476)
+.+ ++++|++||+++++|.+.++++||++|+++|++||++||+||||+|| ++|.+++.+++|+. ||++||||+
T Consensus 252 ~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~ 331 (472)
T 1ohv_A 252 YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKM 331 (472)
T ss_dssp HHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGG
T ss_pred cCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEcccc
Confidence 322 68999999999999999999999999999999999999999999999 88887888889987 999999999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HA 394 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~ 394 (476)
++|| +++ ++++. . ..+..+++|+++||+++++++++|+.+.++++.+++++++++++++|+++..+++ .+
T Consensus 332 l~GG----~~~-~~~~~-~---~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v 402 (472)
T 1ohv_A 332 MTGG----FFH-KEEFR-P---NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI 402 (472)
T ss_dssp SSEE----EEE-CGGGS-C---SSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred ccCC----ccC-chhhc-c---cccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcE
Confidence 6654 444 66552 1 2255678899999999999999999887788999999999999999998866666 36
Q ss_pred eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
..+++.|.|+++++.+ ......+.+.|+++||++.+.+...+|+ ++.+|++||++++++|+++++
T Consensus 403 ~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~ 469 (472)
T 1ohv_A 403 SRVRGRGTFCSFDTPD-------------ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA 469 (472)
T ss_dssp EEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeecCCceEEEEEeCC-------------hhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 6788999999987632 1234678899999999999876567777 788999999999999999987
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
++
T Consensus 470 ~~ 471 (472)
T 1ohv_A 470 DF 471 (472)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 29
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.6e-53 Score=430.28 Aligned_cols=369 Identities=25% Similarity=0.361 Sum_probs=312.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+++||.||++||||.++++++++||+||+|.+++.+++++... ..++.+...+|++++++++ +.+++
T Consensus 39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 117 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDAT-FAERV 117 (420)
T ss_dssp CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCeE
Confidence 48999999999999999999999999999999999999999999999987532 2357789999999999998 57899
Q ss_pred EEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
+|++||+||++.++++++.+ +++++||+++++|||.+...+...+.......+ |. ..++..+|++
T Consensus 118 ~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 189 (420)
T 2pb2_A 118 LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPK--------PADIIHVPFN 189 (420)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSC--------CSCEEEECTT
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCC--------CCCeEEecCC
Confidence 99999999999999988765 566799999999999988877776653221111 11 1246777888
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|+++|++.+++ ++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|.+++.+.+++.||++
T Consensus 190 d~~~le~~i~~---~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 190 DLHAVKAVMDD---HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp CHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhcc---CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 99999999973 79999999999988888888999999999999999999999999999 888877778889999999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
||||++++|+|+|++++++++++.+.. ..+..|+++|+++++++.++|+.++++++.++++++++++++.|+++...
T Consensus 267 t~sK~l~~G~~iG~~~~~~~l~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 267 TSAKALGGGFPVSAMLTTQEIASAFHV---GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECGGGGTTSCCEEEEECHHHHTTCC-------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEhHHHHHhhcC---CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998887763 34667889999999999999999877788999999999999999987555
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
++.+..+++.|+|+++++.... .....++.+.|+++||++.+++.+.+|++ +.++++++++++++|+
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPKY-----------KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGGG-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEecceEEEEEECCCc-----------hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6666678889999999885320 00135788899999999998876678875 7899999999999999
Q ss_pred HHHHHhh
Q 011856 469 KVKMRFL 475 (476)
Q Consensus 469 ~~~~~~~ 475 (476)
+++++++
T Consensus 413 ~~l~~~~ 419 (420)
T 2pb2_A 413 QAVGKVV 419 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 30
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=2.4e-53 Score=432.45 Aligned_cols=366 Identities=21% Similarity=0.281 Sum_probs=307.3
Q ss_pred EEeecCCEEEE-cCCCEEEecccChhhccCCCCcHHHH-H-HHHH---HHHhcCCCC--CCCHHHHHHHHHHHhhCC--C
Q 011856 85 FDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVL-A-ALGE---TMKKGTSFG--APCLLENVLAEMVISAVP--S 154 (476)
Q Consensus 85 ~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~-~-a~~~---~l~~~~~~~--~~~~~~~~la~~l~~~~~--~ 154 (476)
+.+++|+++|| .||++||||.++++++++||+||+|+ + |+.+ +++++.+++ ++.+...++++++++.++ +
T Consensus 39 ~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~ 118 (449)
T 2cjg_A 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA 118 (449)
T ss_dssp TTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT
T ss_pred EeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 46999999999 99999999999999999999999999 9 9999 888764433 678889999999999885 6
Q ss_pred CCeEEEeCCHHHHHHHHHHHHHhccC------------CceEEEEeCCCCCCchhHHhhcCC-CCccCCCCCCCCCCCCC
Q 011856 155 IEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGA 221 (476)
Q Consensus 155 ~e~v~~~~sGseA~~~al~~ar~~~~------------~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 221 (476)
.++|+|++||+||++.|+++++.+++ +++||+++++|||++..++..++. ......+.. .
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~ 191 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPK-------F 191 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCC-------C
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCC-------C
Confidence 78999999999999999999887654 789999999999999888777664 111111100 1
Q ss_pred CCceeeccCCC--H-------------HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 222 TYETLTAPFND--V-------------SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 222 ~~~~~~~~~~d--~-------------~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
..++..+|++| . ++|++.++++.+++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D 271 (449)
T 2cjg_A 192 DWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271 (449)
T ss_dssp CCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 12356666666 3 34888887544589999999999999998999999999999999999999999
Q ss_pred ccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHH
Q 011856 287 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKR 363 (476)
Q Consensus 287 Ev~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~ 363 (476)
|+|+|| |+|.+++++++++.||++|+||++ |+|++++++++++.+.+ ..+..+.+|+++|+++++++.++|+.
T Consensus 272 Ev~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~ 347 (449)
T 2cjg_A 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEV 347 (449)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred ccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 999999 988887888899999999999999 89999999999886432 12345678999999999999999998
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec
Q 011856 364 LKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 442 (476)
++++++.+++++++++++++|+++..+++. +..+++.|+|+++++.. .....++.+.|+++||++.
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~v~ 414 (449)
T 2cjg_A 348 IEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT-------------TADRDELIRQLWQRAVIVL 414 (449)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECE
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC-------------hHHHHHHHHHHHHCCeEEe
Confidence 877789999999999999999998666775 66788999999988742 1223578889999999999
Q ss_pred cCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 443 PSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 443 ~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++...+|+ ++.+|+++|++++++|+++++++
T Consensus 415 ~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 415 PAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 987677787 67899999999999999998875
No 31
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=3.1e-51 Score=417.39 Aligned_cols=379 Identities=22% Similarity=0.295 Sum_probs=309.0
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~-~~~~~~~~~la~~l~~~~~-~~e 156 (476)
.|+++.+++|+++||.||++|||+.++++++++||+||+|.+|+.+++++.. .+ +++.+...++++++++.++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 3889999999999999999999999999999999999999999999998742 23 5678889999999999987 678
Q ss_pred eEEEeCCHHHHHHHHHHHHHhcc------CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeecc
Q 011856 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 229 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 229 (476)
+|+|++||++|++.++++++.++ ++++||+++++|||.+...+...+.......+ |...++ ..+.+|
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~------~~v~~~ 185 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDV------DHLPHT 185 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSE------EEECCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCC------eEecCC
Confidence 99999999999999999887654 67899999999999988777766542211100 000111 011111
Q ss_pred C--------CC--------HHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 230 F--------ND--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 230 ~--------~d--------~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
. -| +++|++.+++++ +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||
T Consensus 186 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 265 (449)
T 3a8u_X 186 LLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265 (449)
T ss_dssp CCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Confidence 1 14 899999997532 478999999999989999999999999999999999999999999999
Q ss_pred -cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC------CCccccCCCCCcHHHHHHHHHHHHHh
Q 011856 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA------GPMYQAGTLSGNPLAMTAGIHTLKRL 364 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~------~~~~~~~t~~~~~~~~aaa~aal~~~ 364 (476)
++|..+..+++++.||++|+||++++| +|+|++++++++++.+... ....+.+|+++|+++++++.++|+.+
T Consensus 266 g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 888777778889999999999999988 9999999999999988642 12245678999999999999999988
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC
Q 011856 365 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (476)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 444 (476)
+++++.+++++++++++++|+++ .+++.+..+++.|.++++++...... ......++.+.|+++||++.++
T Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~--------~~~~~~~~~~~l~~~Gv~v~~~ 416 (449)
T 3a8u_X 346 QKENLVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGD--------AIVRPFEAGMALWKAGFYVRFG 416 (449)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTB--------SSHHHHHHHHHHHHHTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCccc--------ccccHHHHHHHHHHCCcEEecC
Confidence 77789999999999999999874 34566667788999999998542100 0001235788888999999987
Q ss_pred CCcceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 445 QFEAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 445 ~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+ ..+|++ +.+|++++++++++|++++++++
T Consensus 417 g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~~ 448 (449)
T 3a8u_X 417 G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKLL 448 (449)
T ss_dssp T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred C-CEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 6 678886 78999999999999999998754
No 32
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.2e-50 Score=403.17 Aligned_cols=379 Identities=26% Similarity=0.373 Sum_probs=302.6
Q ss_pred HHHHHHHHhhh-CCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCC-cHHHHHHHHHHHHh
Q 011856 53 SEEAFNVAKEL-MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK 130 (476)
Q Consensus 53 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~l~~ 130 (476)
++++.++..++ +..+... | .+|+++.+++|+++||.||++||||.++.+++++||+ ||+|++|+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~ 74 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP----E----LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK 74 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS----C----CCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhccccccc----c----CCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhh
Confidence 45666776666 5443321 1 1488999999999999999999999999998999998 99999999999987
Q ss_pred cCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC
Q 011856 131 GTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205 (476)
Q Consensus 131 ~~~~---~~~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~ 205 (476)
...+ .++.+...++++++++.++ + .++|+|++||+||++.++++++.++ +++||+++++|||.+...+...+..
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 75 LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp SCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred CccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCc
Confidence 5432 3678889999999999997 3 6799999999999999999887666 7899999999999998888776642
Q ss_pred -CccCCC-CCCCCCCCCCCCceeeccCC---------------------CHHHHH-HHHhcCC--CCeEEEEEcccCCCC
Q 011856 206 -VATLGL-PDSPGVPKGATYETLTAPFN---------------------DVSALE-NLFENNK--GEIAAIILEPVVGNS 259 (476)
Q Consensus 206 -~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~~~--~~~a~vi~ep~~~~~ 259 (476)
.....+ +. ...+..+|++ |+++|+ +.++++. +++++|++||+++++
T Consensus 154 ~~~~~~~~~~--------~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~t 225 (419)
T 2eo5_A 154 AVQRSIVGPF--------MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEG 225 (419)
T ss_dssp GGGGCSSCCC--------CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTT
T ss_pred cccccccCCC--------CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCC
Confidence 111111 10 0123333332 367888 8887421 368999999998889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcC
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~ 337 (476)
|.+.++++++++|+++|++||++||+||+|+|| ++|..++.+++++.||++||||++++| +|+||++++++++ .+ .
T Consensus 226 G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~ 303 (419)
T 2eo5_A 226 GYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P 303 (419)
T ss_dssp TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC--
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C
Confidence 988889999999999999999999999999999 888767778889999999999999999 9999999999887 55 2
Q ss_pred CCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCch
Q 011856 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (476)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (476)
..+.+|+++|+++++++.++|+.+++ +.++++++++++.+.|+++ ...+++.|+|+++++..
T Consensus 304 ---~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~------- 365 (419)
T 2eo5_A 304 ---GMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE------- 365 (419)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------
T ss_pred ---cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------
Confidence 24567899999999999999997754 8888999999998888664 34567889999888731
Q ss_pred hhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+..... +.+.|+++||++.+++...+|+ ++.+|++++++++++|+++++++
T Consensus 366 -----~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 366 -----KKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp -----HHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----CccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 112235 8888999999999976567888 56899999999999999998764
No 33
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=1.6e-49 Score=399.32 Aligned_cols=369 Identities=26% Similarity=0.367 Sum_probs=318.1
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
.|+++.+++|+++||.||++||||.++++++++||+||++.+++.+++++... ..++.+...++++++++++ +.+++
T Consensus 21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~~v 99 (406)
T 4adb_A 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADRV 99 (406)
T ss_dssp CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-CCCeE
Confidence 58999999999999999999999999999999999999999999999987432 3467888999999999999 56799
Q ss_pred EEeCCHHHHHHHHHHHHHhc------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+|++||++|++.++++++.+ +++++||+.+++||+.....+...+.......+. ....++..+|++|
T Consensus 100 ~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 172 (406)
T 4adb_A 100 FFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA-------PLPADIRHAAYND 172 (406)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC-------SCCSSEEEECTTC
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC-------CCCCCceEeCCCc
Confidence 99999999999999987655 6779999999999999888887776543221111 1123577788999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t 311 (476)
+++|++.++ +++++|+++|+++++|.+.++.+++++|.++|++||++||+||+|+|| +.|..+..+.+++.||++|
T Consensus 173 ~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t 249 (406)
T 4adb_A 173 INSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT 249 (406)
T ss_dssp HHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE
Confidence 999999886 379999999999989888888889999999999999999999999999 8888777888899999999
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
|||++++|+|+|++++++++++.+. +..+..+++.|+++++++.++|+.++++++.++++++++++++.|+++...+
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 250 TAKALGGGFPVGALLATEECARVMT---VGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp ECGGGGTTSCCEEEEECHHHHHTCC---TTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCCCeEEEEEcHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887 3446678899999999999999988778889999999999999999987667
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
+.+.++++.|.++++.+..... ....++.+.|+++||++.+++...+|+ ++.++++++++++++|++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADYA-----------GQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTTT-----------TCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEEEeCCcH-----------HHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7777888899999999864210 113578899999999999987778888 688999999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
+++++
T Consensus 396 ~l~~~ 400 (406)
T 4adb_A 396 ACEHF 400 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 34
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=2.8e-49 Score=400.11 Aligned_cols=401 Identities=27% Similarity=0.423 Sum_probs=322.1
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc
Q 011856 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (476)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~ 131 (476)
+++++.++..++++.++... +|+++.+++|+++||.||++||||.++.++.++||++|++.+++.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~ 73 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL 73 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS---------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHhcCcccccc---------CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC
Confidence 46778889999998776432 388999999999999999999999999888899999999999999998764
Q ss_pred CC---CCCCCHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 132 TS---FGAPCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 132 ~~---~~~~~~~~~~la~~l~~~~~~-~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
.. .+++.+...+|++.+++++++ . ++|+|++||++|++.++++++.++++++|++++++||+.....+...+...
T Consensus 74 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~ 153 (426)
T 1sff_A 74 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153 (426)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred CCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCcc
Confidence 22 235678889999999999953 4 899999999999999999888787777999999999999887776655421
Q ss_pred ccCCCCCCCCCCCCCCCceeeccC-----C-----CHHHHHHHHhc--CCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPF-----N-----DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-----~-----d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
.. ..++. .....+..+|+ + |+++|++.+++ +++++++|+++|+++|+|.+.++++++++|.+
T Consensus 154 ~~-----~~~~~-~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~ 227 (426)
T 1sff_A 154 PY-----SAGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRA 227 (426)
T ss_dssp TT-----TTTSC-CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHH
T ss_pred cc-----ccccC-CCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 00 00000 00011222332 2 68899998874 12368999999998889988899999999999
Q ss_pred HHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHH
Q 011856 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~ 353 (476)
+|++||++||+||+|+|| +.|..+..+.+++.||+++|||++++|+|+||+++++++++.+.. ..+..|++.|+++
T Consensus 228 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~---~~~~~~~~~~~~~ 304 (426)
T 1sff_A 228 LCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAP---GGLGGTYAGNPIA 304 (426)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCT---TSBCCSSSSCHHH
T ss_pred HHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhcc---CCcCcCCCCCHHH
Confidence 999999999999999999 877766677888899999999999999999999999999887763 3356788999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 354 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 354 ~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
++++.++|+.++++++.+++++++++++++|+++...++.+..+++.|.++++++..... ...|+.....++.+.
T Consensus 305 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ 379 (426)
T 1sff_A 305 CVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD-----HNKPDAKLTAEIVAR 379 (426)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGC-----TTSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCChHHHHHHHHH
Confidence 999999999887778999999999999999998765566556677789999999853110 011223345678889
Q ss_pred HHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHHhh
Q 011856 434 MLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 434 l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
|+++||++.++. ...+|++ +.++++++++++++|+++++++.
T Consensus 380 l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 380 ARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999876 3567875 47899999999999999998764
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-49 Score=397.10 Aligned_cols=360 Identities=25% Similarity=0.346 Sum_probs=307.6
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
+|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+++++... ..++.+...++++++++.+ +.+++
T Consensus 18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 96 (392)
T 3ruy_A 18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-NKEMV 96 (392)
T ss_dssp CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-TCSEE
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-CCCEE
Confidence 58999999999999999999999999999999999999999999999987432 2245677889999999988 58999
Q ss_pred EEeCCHHHHHHHHHHHHHhc--------cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+|++||++|++.++++++.. +++++|++.+++|||.+..++...+.......+ .....++..+++
T Consensus 97 ~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 169 (392)
T 3ruy_A 97 LPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF-------GPMLPGIIVIPY 169 (392)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC-------CSCCSSEEEECT
T ss_pred EEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc-------CCCCCCCeeeCc
Confidence 99999999999999988766 567899999999999998888776653322111 011123667888
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi 309 (476)
+|+++|+++++ +++++|++++++|++|.+.++++|+++|+++|++||++||+||+|+|| +.|..+..+.+++.||+
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 246 (392)
T 3ruy_A 170 GDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM 246 (392)
T ss_dssp TCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred ccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCE
Confidence 99999999997 379999999999999999999999999999999999999999999999 88887788888999999
Q ss_pred hhhhhhcCCC-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 310 ~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+||||++++| +|+|++++++++++.+. ...+..+++.|+++++++.++|+.++.+++.++++++.+++++.|+++.
T Consensus 247 ~~~SK~l~gG~~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (392)
T 3ruy_A 247 YILGKALGGGVFPISCAAANRDILGVFE---PGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID 323 (392)
T ss_dssp EEECGGGGTTTSCCEEEEECHHHHTTCC---TTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEchhhhCChhhhEEEEECHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999988876 3446678899999999999999988768899999999999999988752
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~ 466 (476)
.+....+++.|.++++.+... ..++.+.|+++||++.+++...+|++ +.+|++++++++++
T Consensus 324 --~~~~~~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~ 386 (392)
T 3ruy_A 324 --NPMITEVRGKGLFIGIELNEP---------------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQK 386 (392)
T ss_dssp --CTTEEEEEEETTEEEEEESSC---------------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred --CCCceEEEeeeeEEEEEEcch---------------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 245566778899999987431 15788899999999999877778886 78899999999999
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 387 l~~~l 391 (392)
T 3ruy_A 387 IKAVL 391 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
No 36
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=2.1e-49 Score=401.42 Aligned_cols=372 Identities=25% Similarity=0.328 Sum_probs=301.9
Q ss_pred CeE-EEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCC
Q 011856 82 PIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIE 156 (476)
Q Consensus 82 p~~-~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~---~~~~~~~~~~la~~l~~~~~-~~e 156 (476)
|++ +.+++|+++||.||++|+|+.++++++++||++|+|++|+.+++++... .+++.+...+++++++++++ +.+
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (429)
T 1s0a_A 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE 104 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC
T ss_pred CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 555 9999999999999999999999999999999999999999999987432 24567888999999999997 789
Q ss_pred eEEEeCCHHHHHHHHHHHHHhccC-----CceEEEEeCCCCCCchhHHhhcCCCC-ccCCC-CCCCCCCCCCCCceeecc
Q 011856 157 MVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP 229 (476)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 229 (476)
+|+|++||+||++.++++++.+++ +++||+++++||++....+...+... ....+ +...++ ..+.++
T Consensus 105 ~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 178 (429)
T 1s0a_A 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN------LFAPAP 178 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC------EEECCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc------eEeCCC
Confidence 999999999999999998776554 78999999999998887766554321 00000 000010 111111
Q ss_pred ---------CCCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc
Q 011856 230 ---------FNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (476)
Q Consensus 230 ---------~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (476)
..|+++|++.++++++++++|++||+ ++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 179 QSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp CSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH
Confidence 24789999999754457899999999 8889998889999999999999999999999999999 888766
Q ss_pred hhhccCCCCchhhhhhhcCCC-CcEEEEEecHHHHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 011856 299 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (476)
Q Consensus 299 ~~~~~g~~pDi~t~sK~lg~G-~~iG~~~~~~~i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (476)
..+++++.||++|+||++++| +|+|++++++++++.+... ....+.+|+++|+++++++.++|+.++++++.+++++
T Consensus 259 ~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778889999999999999999 9999999999999888642 1123567899999999999999998877788899999
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--C
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--L 453 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~ 453 (476)
++++++++|+++.. ++....+++.|.++++++... . + ..++.+.|+++||++.+.+ ..+|++ +
T Consensus 339 ~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-~---------~---~~~l~~~l~~~Gi~v~~~~-~~iRis~~~ 403 (429)
T 1s0a_A 339 IEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-V---------N---MAALQKFFVEQGVWIRPFG-KLIYLMPPY 403 (429)
T ss_dssp HHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-B---------C---HHHHHHHHHHTTEECCCBT-TEEEECCCT
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-c---------c---HHHHHHHHHHCCCEEeccC-CEEEEECCC
Confidence 99999999987632 444555778899999987431 0 1 2467888899999999864 567876 7
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+|++++++++++|+++++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSG
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999999987654
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=9.7e-47 Score=378.00 Aligned_cols=365 Identities=26% Similarity=0.352 Sum_probs=302.1
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~--~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
.+|+++.+++|+++||.||++|+||.++++++++||++|++.+++.+++++... ..++.+...++++++++++ +.++
T Consensus 21 ~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~ 99 (397)
T 2ord_A 21 RFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNT-FGGK 99 (397)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTT-TSCE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhc-CCCe
Confidence 459999999999999999999999999999999999999999999999987432 2246688899999999998 5789
Q ss_pred EEEeCCHHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
++|++||++|++.+++.++.+ +++++||+++++||+.+...+...|.......+ |. ..++..+|++
T Consensus 100 v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 171 (397)
T 2ord_A 100 VFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPL--------VPGFEYFEFN 171 (397)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSC--------CTTEEEECTT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCC--------CCCeeEecCC
Confidence 999999999999999976544 467789999999999888666665542111000 11 1236777888
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|+++|++.+++ ++++|+++|+++++|.+.++.+++++|+++|++||++||+||+|+|| +.|..+..+.++..||++
T Consensus 172 d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 248 (397)
T 2ord_A 172 NVEDLRRKMSE---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL 248 (397)
T ss_dssp CHHHHHHHCCT---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhhc---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee
Confidence 99999999863 78999999999999986677788999999999999999999999999 777666566778889999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
||||++++|+|+|+++++++++ .+. ...+..+++.|+++++++.++|+.++++++.++++++++++.+.|+++...
T Consensus 249 s~sK~~~~G~r~G~~~~~~~~~-~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (397)
T 2ord_A 249 TTAKGLGGGVPIGAVIVNERAN-VLE---PGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE 324 (397)
T ss_dssp EECGGGGTTSCCEEEEECSTTC-CCC---TTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCcCeEEEEEchHhc-ccC---CCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998876 554 234566888999999999999998877789999999999999999887544
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
++....+++.|.++++.+.... ...++.+.|+++||++.+++...+|++ +.++++++++++++|+
T Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~ 391 (397)
T 2ord_A 325 YDVVADVRGMGLMIGIQFREEV-------------SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391 (397)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEeEEEEEEECChH-------------HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 5655556788999998875310 125788899999999998866678886 6789999999999999
Q ss_pred HHHHH
Q 011856 469 KVKMR 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+++++
T Consensus 392 ~~l~~ 396 (397)
T 2ord_A 392 KVLQG 396 (397)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98875
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=2e-45 Score=368.22 Aligned_cols=360 Identities=30% Similarity=0.431 Sum_probs=297.7
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCC-CCCe
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEM 157 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~~~~~~~~~la~~l~~~~~-~~e~ 157 (476)
.|+++.+++|+++||.+|++|+||.++.+++++||.+|.+.+++.+++++.... .++.+...+++++++++++ +.++
T Consensus 27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~ 106 (395)
T 1vef_A 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNR 106 (395)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEE
T ss_pred CCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCE
Confidence 588999999999999999999999999888999999999999999999874321 2467889999999999986 6789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCC-CCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
+++++||++|++.+++.++.++++++||+++++||+.....+...|....... .|. ..++..++++|+++|
T Consensus 107 v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~~l 178 (395)
T 1vef_A 107 VFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVEAL 178 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHHHH
Confidence 99999999999999997665567889999999999988766665554321100 011 123556677899999
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhh
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~ 315 (476)
++.+++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+.+++.+|+++|||.
T Consensus 179 ~~~i~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~ 255 (395)
T 1vef_A 179 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKA 255 (395)
T ss_dssp HHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGG
T ss_pred HHHhcc---CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEccc
Confidence 999973 68999999999889999899999999999999999999999999999 77766566777888999999999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
+++|+|+|++++++++++.+.. ..+..+++.|+++++++.++|+.+.++++.++++++.+++++.|+++.. +...
T Consensus 256 ~~~g~~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~ 330 (395)
T 1vef_A 256 LGGGVPLGVAVMREEVARSMPK---GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PKIR 330 (395)
T ss_dssp GGTTSSCEEEEEEHHHHHTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TTEE
T ss_pred ccCCCceEEEEehHHHHhhhcc---CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--CceE
Confidence 9999999999999999888763 2345678899999999999999876667889999999999999887532 3334
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
.+++.|.++++.+..+ ..++.+.|+ ++||++.+++...+|++ +.++++++++++++|++++
T Consensus 331 ~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 331 EVRGMGLMVGLELKEK---------------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEETTEEEEEESSC---------------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEcCh---------------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4667888999887421 156788888 99999998766678884 5789999999999999876
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=5.2e-43 Score=348.00 Aligned_cols=355 Identities=27% Similarity=0.387 Sum_probs=288.9
Q ss_pred CCCeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCe
Q 011856 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 157 (476)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~~~~~~~~la~~l~~~~~~~e~ 157 (476)
.+|+++.+++|+++||.+|+.|+||.++...+.+||.+|.+.+++.+++++.. ...++.....+++++++++++-+++
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~ 88 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGK 88 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEE
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCe
Confidence 35899999999999999999999999998878999999999999999997642 2245677788999999999842389
Q ss_pred EEEeCCHHHHHHHHHHHHHhcc-----CCceEEEEeCCCCCCchhHHhhcCCCCccCCC-CCCCCCCCCCCCceeeccCC
Q 011856 158 VRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (476)
+++++||++|++.++++++.++ ++++|++.+++||+....+....+..+..... |. ..++..++++
T Consensus 89 v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 160 (375)
T 2eh6_A 89 VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL--------VPGFSYAKLN 160 (375)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC--------CSSEEEECTT
T ss_pred EEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC--------CCCceeCCCc
Confidence 9999999999999999765554 44889999999999887776665543211000 11 1236667778
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~ 310 (476)
|+++|++.+++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|++| +.+..+..+.++..+|++
T Consensus 161 d~~~l~~~l~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 161 DIDSVYKLLDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp CHHHHHTTCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred hHHHHHHHhcC---CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 99999998863 68999999999999999899999999999999999999999999988 666545556778789999
Q ss_pred hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 311 t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
++||.+++|+|+|++++++++++.+.+ ..+..+++.++++++++.++|+.++ ++.++++++.+++.+.|+++.
T Consensus 238 s~SK~~~~g~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-- 310 (375)
T 2eh6_A 238 ALAKGLGGGVPIGAILAREEVAQSFTP---GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELG-- 310 (375)
T ss_dssp EECGGGGTTSCCEEEEEEHHHHTTCCT---TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT--
T ss_pred EEcccccCCCCeEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999998887763 2345677889999999999998775 678888889999988887752
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
. ..+++.|.++++.+..+ ..++.+.|+++||.+.+++...+|++ ..++++++++++++|+
T Consensus 311 --~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 372 (375)
T 2eh6_A 311 --K-GKVKGRGLMLGLELERE---------------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLR 372 (375)
T ss_dssp --S-SEEEEETTEEEEECSSC---------------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --c-CCceEEEEEEEEEEcCc---------------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 34567888988887421 14678888999999998766678886 5789999999999998
Q ss_pred HH
Q 011856 469 KV 470 (476)
Q Consensus 469 ~~ 470 (476)
++
T Consensus 373 ~~ 374 (375)
T 2eh6_A 373 EI 374 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 40
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=7.1e-40 Score=331.30 Aligned_cols=366 Identities=19% Similarity=0.198 Sum_probs=285.4
Q ss_pred CChhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEE-eecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHH
Q 011856 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFD-SVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGE 126 (476)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~-~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~ 126 (476)
.+.+++++.++.+++.+.|+. +| .+.++. +++|+++|| ||++||||.++ +++| +.+|++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~g~~--~r-------~~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~ 89 (427)
T 2w8t_A 23 LLSKFDGLIAERQKLLDSGVT--DP-------FAIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKE 89 (427)
T ss_dssp TTGGGHHHHHHHHHHHHTTCC--CT-------TCCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCc--ce-------eeeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHH
Confidence 355778899999999998843 22 134667 999999999 99999999999 6899 589999999999
Q ss_pred HHHh-cCCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH
Q 011856 127 TMKK-GTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 127 ~l~~-~~~~~------~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (476)
++.+ +..++ ++.+...+|++.+++++ +.+++++++||++|++.+++. ++++++.|+++..+|+.+...+
T Consensus 90 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~al~~---l~~~gd~vl~~~~~h~~~~~~~ 165 (427)
T 2w8t_A 90 ALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GTTGAIVFSTGYMANLGIIST---LAGKGEYVILDADSHASIYDGC 165 (427)
T ss_dssp HHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHH---HSCTTCEEEEETTCCHHHHHHH
T ss_pred HHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CCCceEEecCcHHHHHHHHHH---hcCCCCEEEECCcccHHHHHHH
Confidence 9987 43222 14678889999999988 567889999999999999884 4566666777777887666555
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (476)
...|. +++.++++|+++|++++++..+ ++++|+++++++++|.+.+ +++|+++|++
T Consensus 166 ~~~g~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~ 222 (427)
T 2w8t_A 166 QQGNA-------------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKK 222 (427)
T ss_dssp HHSCS-------------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred HHcCC-------------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH
Confidence 44432 3566778899999999986543 6899999999999999998 9999999999
Q ss_pred hCCEEEEeccccCcccc--ccchhhccCCCCc----hhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHH
Q 011856 279 NGALLIFDEVMTGFRLA--YGGAQEYFGVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (476)
Q Consensus 279 ~g~llI~DEv~~g~r~g--~~~~~~~~g~~pD----i~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~ 352 (476)
||++||+||+|+++..+ ..+..+++++.+| +.|+||++| ++.||+++++++++.+.+....+.. +.+.|++
T Consensus 223 ~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~-~~~~~~~ 299 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIF-TASLPPS 299 (427)
T ss_dssp TTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHS-SCCCCHH
T ss_pred cCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccc-cCCCCHH
Confidence 99999999999876222 2345566787766 558999996 4669999999999988753222222 5578899
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHH
Q 011856 353 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (476)
Q Consensus 353 ~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (476)
.++++.++|+.++. ++.+++++++++++++.|+++ ++.....+ .|.++++.+.+ .....++
T Consensus 300 ~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~l 362 (427)
T 2w8t_A 300 VVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLED-------------QEQAAMM 362 (427)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEESS-------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEECC-------------HHHHHHH
Confidence 99999999998876 678899999999999999886 22221133 67788887732 2335678
Q ss_pred HHHHHHCCeEeccCCC-------cceEEeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 431 YRGMLEEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 431 ~~~l~~~Gv~~~~~~~-------~~~~~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.|+++||++.++.. ..+|+++. +|++++++++++|+++++++
T Consensus 363 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 363 WQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp HHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999987643 35677544 69999999999999998765
No 41
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3.8e-39 Score=325.38 Aligned_cols=356 Identities=11% Similarity=0.009 Sum_probs=257.9
Q ss_pred cCCCCeEEEeecCCEEEEcC--CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC
Q 011856 78 VGGQPIVFDSVKGSHMWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP 153 (476)
Q Consensus 78 ~~~~p~~~~~~~G~~~~d~d--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~ 153 (476)
+++.+++..+++|+++||.+ |++||||..+ ++..+.+|+|.+|+.++++++. .|. ...++..++++++.+.++
T Consensus 38 y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g 114 (421)
T 3l8a_A 38 YDFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHD 114 (421)
T ss_dssp CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHC
T ss_pred ccCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhC
Confidence 44457888999999999999 8999999877 5555689999999999998743 222 236778889999888764
Q ss_pred ---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 154 ---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 ---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
..++|+|++||+||++.+++.+ ...+++|++..++||+....+.. .|..+...++....+ .+.
T Consensus 115 ~~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~-~g~~~~~~~~~~~~~--------~~~--- 180 (421)
T 3l8a_A 115 YAVVKEDILFIDGVVPAISIALQAF--SEKGDAVLINSPVYYPFARTIRL-NDHRLVENSLQIING--------RFE--- 180 (421)
T ss_dssp CCCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHH-TTEEEEEEECEEETT--------EEE---
T ss_pred CCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHH-CCCEEEeccccccCC--------Cee---
Confidence 5789999999999999999963 33457899999999996554433 333222111100000 011
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hh-----hcc
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQ-----EYF 303 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~-----~~~ 303 (476)
.|+++|++.+++ +++++|+++++++++|.++ +++++++|+++|++||++||+||+|++| ++|... .. +..
T Consensus 181 ~d~~~le~~i~~--~~~~~vil~~p~nptG~~~-~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 257 (421)
T 3l8a_A 181 IDFEQLEKDIID--NNVKIYLLCSPHNPGGRVW-DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYK 257 (421)
T ss_dssp CCHHHHHHHHHH--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGG
T ss_pred eCHHHHHHHhhc--cCCeEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhc
Confidence 289999999974 2688999999999999665 4555999999999999999999999999 766421 11 223
Q ss_pred CCCCchhhhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCcc-ccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 378 (476)
Q Consensus 304 g~~pDi~t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 378 (476)
+..+++.++||+++ +|+|+|+++++ +++++.+.. .. ..+++++|+++++++.++++..++ ++..++++++.+
T Consensus 258 ~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~---~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 258 DFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQY---RQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp GTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH---HHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHH---HHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44466779999998 79999999998 889888763 22 334568899999999999985332 445555666666
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEE-EEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceE
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFG-FFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGF 450 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~ 450 (476)
++++.|++. +.+..+++.|.++. +++...... ..++.+.|++ +||++.++. ...+|
T Consensus 335 ~l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~~~------------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iR 398 (421)
T 3l8a_A 335 LVIKELEAK----TKIKVMEPEGTYLVWLDFSAYAIA------------QPQLSEKLQNEAKVVLNDGAHFGKEGKYFAR 398 (421)
T ss_dssp HHHHHHHHH----CSCEEECCSBSSEEEEECGGGTCC------------TTHHHHHHHHTTCEECEEGGGGCGGGTTEEE
T ss_pred HHHHHHHhC----CCceEeCCCeeEEEEEeccccCCC------------HHHHHHHHHHhCCEEEECchhhCCCCCCEEE
Confidence 666666554 33445566666655 766431100 1467788875 599998742 35689
Q ss_pred EeCCCcHHHHHHHHHHHHHHHH
Q 011856 451 TSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 451 ~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+++.+++++|++++++|+++++
T Consensus 399 i~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 399 LNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EECCSCHHHHHHHHHHHHHHC-
T ss_pred EEecCCHHHHHHHHHHHHHHHh
Confidence 9888999999999999998865
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.9e-36 Score=302.99 Aligned_cols=342 Identities=17% Similarity=0.248 Sum_probs=264.3
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCC
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVP 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~ 153 (476)
+.++.+++|+++|| ||++||||.++ +++| +++|++.+++.+++.+. ... ....+...++++++++++
T Consensus 27 ~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~- 101 (399)
T 3tqx_A 27 ERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL- 101 (399)
T ss_dssp CCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH-
T ss_pred cccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH-
Confidence 67788999999999 99999999999 8899 68999999999998872 111 124577889999999988
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.++.++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.+|++|+
T Consensus 102 ~~~~~i~~~sGt~a~~~~l~---~~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~ 159 (399)
T 3tqx_A 102 GTDDTILYSSCFDANGGLFE---TLLGPEDAIISDELNHASIIDGIRLCKA-------------------QRYRYKNNAM 159 (399)
T ss_dssp TCSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHSCCS-------------------EEEEECTTCT
T ss_pred CCCcEEEECchHHHHHHHHH---HhcCCCCEEEECCcccHHHHHHHHHcCC-------------------ceeEeCCCCH
Confidence 44567777889999999988 4455555666666677655555444332 3556667789
Q ss_pred HHHHHHHhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCC--C
Q 011856 234 SALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (476)
Q Consensus 234 ~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (476)
++|++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+| .|+ ........+.+++ .
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADR 235 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTC
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCC
Confidence 999999975332 6899999999999999998 999999999999999999999 576 3222234566676 7
Q ss_pred Cchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 307 pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~-~~~~~~~~~~~~~l~~ 382 (476)
+|++ ++||.++ |++.||+++++++++.+......+.. +.+.+++.++++.++++.+ +. ++..++++++.+++.+
T Consensus 236 ~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 313 (399)
T 3tqx_A 236 VDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLF-SNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRA 313 (399)
T ss_dssp CSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHS-SCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceec-cCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 7887 8999998 78889999999999888642222222 4467899999999999987 43 6788889999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeC--
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL-- 453 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~-- 453 (476)
.|+++. ..+ +++.|.++++.+.. .....++.+.|+++||++.++.+ ..+|+++
T Consensus 314 ~L~~~g--~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~ 375 (399)
T 3tqx_A 314 GMEKLG--FQL---VPGNHPIIPVMLGD-------------AQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSA 375 (399)
T ss_dssp HHHHHT--CCB---CCCSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCT
T ss_pred HHHHcC--CCc---CCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeec
Confidence 998872 221 25678888887742 23346888999999999986532 3567765
Q ss_pred CCcHHHHHHHHHHHHHHHHHh
Q 011856 454 AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++++++++++++|+++++++
T Consensus 376 ~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 376 VHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999875
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=2.9e-35 Score=294.92 Aligned_cols=343 Identities=19% Similarity=0.256 Sum_probs=260.4
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCCCC---C---CCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG---A---PCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~~~---~---~~~~~~~la~~l~~~~ 152 (476)
+|.++.+++|+++||.||++||||.++ +++|+ .+|++.+++.+++.+ +..++ + ..+...++++.+++++
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 103 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 378899999999999999999999999 78997 899999999999876 33221 1 2567788999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+ .++.++++||++|++.+++. +.++++.|++...+|+.....+...|. +++.++.+|
T Consensus 104 g-~~~~i~~~sGs~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 160 (401)
T 1fc4_A 104 G-MEDAILYSSCFDANGGLFET---LLGAEDAIISDALNHASIIDGVRLCKA-------------------KRYRYANND 160 (401)
T ss_dssp T-CSEEEEESCHHHHHHTTHHH---HCCTTCEEEEETTCCHHHHHHHHTSCS-------------------EEEEECTTC
T ss_pred C-CCcEEEeCChHHHHHHHHHH---HcCCCCEEEEcchhHHHHHHHHHHcCC-------------------ceEEECCCC
Confidence 4 44677888899999999884 455555666666677655444333332 345566679
Q ss_pred HHHHHHHHhcCCC---CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-c-ccccchhhccCCC
Q 011856 233 VSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-R-LAYGGAQEYFGVT 306 (476)
Q Consensus 233 ~~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r-~g~~~~~~~~g~~ 306 (476)
+++|++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+| .|+ . .+..+ .+.+++.
T Consensus 161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~ 235 (401)
T 1fc4_A 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCC
Confidence 9999999875221 5788999999899999998 999999999999999999999 588 3 44432 3445655
Q ss_pred C--chh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 011856 307 P--DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELT 381 (476)
Q Consensus 307 p--Di~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~ 381 (476)
+ |++ ++||.++++. .|++++++++++.+...... ...+++.|+++++++.++|+.+.+ +++.++++++.+++.
T Consensus 236 ~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (401)
T 1fc4_A 236 GRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4 666 7999996554 59999999999887632111 222567899999999999998765 678888999999999
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeCC
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA 454 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~~ 454 (476)
+.|+++ ...+ +++.|.++++.+.+ .....++.+.|+++||++.++.. ..+|+++.
T Consensus 314 ~~L~~~--g~~~---~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 314 EQMSAA--GFTL---AGADHAIIPVMLGD-------------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHT--TCCB---CCSSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHc--CCcc---cCCCCCEEEEEcCC-------------hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 998875 2222 24678888888742 12346788899999999987642 24777654
Q ss_pred --CcHHHHHHHHHHHHHHHHHh
Q 011856 455 --HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 --~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++++|+++++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998764
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=6.3e-35 Score=291.21 Aligned_cols=356 Identities=12% Similarity=0.084 Sum_probs=253.6
Q ss_pred eEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC-CCHHHHHHHHHHHhhCC---CCCe
Q 011856 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP---SIEM 157 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~-~~~~~~~la~~l~~~~~---~~e~ 157 (476)
++..+++|+++||.+|++||||..+ ++....+|.|.+++.+++.++. .|+. ..+++.++++++.+.++ +.++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6677999999999999999999987 5555589999999999998742 2222 45677888888887653 4789
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
+++++||++|++.+++.. ..+++.|++.+++||+....+ ...|..+...+.....+ ... .|+++|+
T Consensus 88 i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~ 153 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSVI-EGNGRRVISSDLIYENS--------KYS---VNWADLE 153 (391)
T ss_dssp EEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHHH-HHTTCEEEECCCEEETT--------EEE---CCHHHHH
T ss_pred EEECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHHH-HHcCCEEEEeeeeecCC--------cee---ecHHHHH
Confidence 999999999999999963 345678888888998854433 33444332211100011 000 2899999
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCC-CCc----hh
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD----LT 310 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~-~pD----i~ 310 (476)
+.+++. ++++|+++.+++++|.+.+..+ +++|.++|++||++||+||+|+++ +.|. ......++. .+| +.
T Consensus 154 ~~l~~~--~~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~ 230 (391)
T 3dzz_A 154 EKLATP--SVRMMVFCNPHNPIGYAWSEEE-VKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI 230 (391)
T ss_dssp HHHTST--TEEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEE
T ss_pred HHHhcc--CceEEEEECCCCCCCcccCHHH-HHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEE
Confidence 999742 6788877777888888776444 999999999999999999999988 6653 233333332 267 44
Q ss_pred hhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011856 311 TLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 311 t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
++||.++ +|+|+|+++++ +++++.+... ....++++.|+++++++.++|+...+ ++..++++++.+++.+.|++
T Consensus 231 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 231 SPSKTFNLAALHAACAIIPNPDLRARAEES--FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp CSHHHHTCTTTCCEEEECCSHHHHHHHHHH--HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhccccchhheEEEECCHHHHHHHHHH--HHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999998 89999999997 8888887631 11234567899999999999876321 45556666667777777665
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHH
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDD 459 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~ 459 (476)
... ++....+..+.++++.+.... ....++.+.|+ ++||++.++. ...+|+++.+++++
T Consensus 309 ~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~ 374 (391)
T 3dzz_A 309 EVP--EVKVLDSNASYLAWVDISALG------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKEL 374 (391)
T ss_dssp HCT--TSEECCCCBSSEEEEECGGGC------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHH
T ss_pred hCC--CcEEeccCceEEEEEehhhcC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHH
Confidence 311 222222233444556664211 01357888886 8999998753 24578988899999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|+++++++
T Consensus 375 i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 375 VIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 45
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=2.2e-35 Score=293.09 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=243.1
Q ss_pred EEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---CCCeE
Q 011856 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---SIEMV 158 (476)
Q Consensus 84 ~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~---~~e~v 158 (476)
...+++|+++||.||++||||.++. +.++ .+|+|.+++.+++.++. .|. ...+++.++++++.+.++ +.+++
T Consensus 8 ~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 8 EDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHE
Confidence 3458999999999999999999883 3343 79999999999998732 222 125677788888775542 46899
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++++||++|++.+++.. ..+++.|++..++||++...+ ...|..+...+... + .|+++|++
T Consensus 85 ~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~--~--------------~d~~~l~~ 145 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHLL-SATQREGIFIDATG--G--------------INLHDVEK 145 (377)
T ss_dssp EEESCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHHH-HHHTCCEEEEECTT--S--------------CCHHHHHH
T ss_pred EEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHH-HHcCCEEEEccCCC--C--------------CCHHHHHH
Confidence 99999999999999953 345678999999999865443 33344322211110 0 28999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-c-c---chhhccCCCCchhhh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y-G---GAQEYFGVTPDLTTL 312 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~-~---~~~~~~g~~pDi~t~ 312 (476)
.++++ +++++++.++|++|.+.+.++ +++|+++|++||++||+||+|+++ +.+ . . ......+..+++.++
T Consensus 146 ~l~~~---~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 221 (377)
T 3fdb_A 146 GFQAG---ARSILLCNPYNPLGMVFAPEW-LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAP 221 (377)
T ss_dssp HHHTT---CCEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECS
T ss_pred HhccC---CCEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeC
Confidence 99853 445555555777888776544 999999999999999999999988 655 1 1 111122233456689
Q ss_pred hhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHh
Q 011856 313 GKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 313 sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
||.+| +|+|+||+++ ++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|++..
T Consensus 222 sK~~g~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 222 SKAWNIAGLKCAQIIFSNPSDAEHWQQ---LSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp TTTTTCGGGCCEEEECCSHHHHHHHHH---SCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHhccCcchhheEEEeCCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99997 7999998865 7888888763 33445678899999999999885422 4556666677777777776642
Q ss_pred hhcCCceEeeeece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEEeCCCcHHHH
Q 011856 389 KKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 460 (476)
Q Consensus 389 ~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~i 460 (476)
+......+.+. ++++.+...... .++...|+++ ||++.++. ...+|+++..+++++
T Consensus 299 ---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i 362 (377)
T 3fdb_A 299 ---PGAKITPMQATYLMWIDFRDTTIE-------------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVL 362 (377)
T ss_dssp ---TTCEECCCSBCSEEEEECTTSCCC-------------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ---CCceEecCCeeEEEEEECcccCCC-------------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHH
Confidence 21222334444 446766432110 2456667665 99998763 346789888899999
Q ss_pred HHHHHHHHHHHHHh
Q 011856 461 QHTITAAEKVKMRF 474 (476)
Q Consensus 461 ~~~~~~l~~~~~~~ 474 (476)
++++++|+++++++
T Consensus 363 ~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 363 EEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998754
No 46
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1e-33 Score=283.36 Aligned_cols=340 Identities=19% Similarity=0.222 Sum_probs=256.8
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhcC-CC------CCCCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~-~~------~~~~~~~~~la~~l~~~~ 152 (476)
+|+++.+++|+++| .+|++++||.++ +++|+ .+|.+.+++.+++++.. .+ .+..++..++++++++.+
T Consensus 26 ~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (398)
T 3a2b_A 26 YFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYV 101 (398)
T ss_dssp SSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 37889999999999 999999999998 55888 79999999999987632 11 124688899999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+.+++++++||++|++.+++. +.++++.|+....+|+.+...+...|. .++.+|..|
T Consensus 102 -g~~~v~~~~ggt~a~~~~~~~---~~~~gd~V~~~~p~~~~~~~~~~~~g~-------------------~~~~v~~~d 158 (398)
T 3a2b_A 102 -GKEAAILFSTGFQSNLGPLSC---LMGRNDYILLDERDHASIIDGSRLSFS-------------------KVIKYGHNN 158 (398)
T ss_dssp -TCSEEEEESSHHHHHHHHHHH---SSCTTCEEEEETTCCHHHHHHHHHSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEECCHHHHHHHHHHH---HhCCCCEEEECCccCHHHHHHHHHcCC-------------------ceEEeCCCC
Confidence 568999999999999999994 455555555556666666655554443 244556679
Q ss_pred HHHHHHHHhcCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---cccccchhhccCCC--
Q 011856 233 VSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVT-- 306 (476)
Q Consensus 233 ~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~-- 306 (476)
+++|++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|..+ +.+.. ..+.+++.
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~ 233 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAG-TASHFGLNDD 233 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCC-HHHHHTCGGG
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCc-hHhhcCCCcC
Confidence 9999999986433 6789999999999999988 999999999999999999999644 22322 23445553
Q ss_pred Cchh--hhhhhcCC-CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011856 307 PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 307 pDi~--t~sK~lg~-G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (476)
+|++ ++||.++. | ||+++++++++.+..... .+..+...++..++++.++|+.++. ++..++++++.+++.+
T Consensus 234 ~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 234 VDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNAR-SVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp CSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCH-HHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CeEEEecccccccCCC---cEEEeCHHHHHHHHHhcc-cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 5777 89999983 5 999999999888763111 1233445567766677788877644 5788889999999999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeCC-
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA- 454 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~~- 454 (476)
.|+++ ...+ +++.|.++++.+.. .....++.+.|+++||++.++.. ..+|+++.
T Consensus 310 ~L~~~--g~~~---~~~~g~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 310 QLLDH--GFDL---GATESPILPIFIRS-------------NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp HHHHT--TCCB---CSCCSSEEEEECCC-------------HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred HHHhc--CCCc---CCCCCCEEEEEcCC-------------HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 99875 2222 23457888887631 22346788999999999988643 35788766
Q ss_pred -CcHHHHHHHHHHHHHHHHHh
Q 011856 455 -HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 -~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++++|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998764
No 47
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=6e-35 Score=293.49 Aligned_cols=332 Identities=15% Similarity=0.101 Sum_probs=250.7
Q ss_pred eecCCEEEEcCCCEEEecccChhhccCCC-CcHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCCCCCeE
Q 011856 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEMV 158 (476)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-~~~------~~~~~~~~~la~~l~~~~~~~e~v 158 (476)
++.+.+++|.||++||||.++ +++|+ .||++.+++.+++++. ... ....+...++++++++++ +.+..
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~~~ 122 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFDEC 122 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCSEE
T ss_pred CCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCCeE
Confidence 567778888999999999998 78888 6999999999999872 111 122344566777777777 56678
Q ss_pred EEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.++.+|+++|++
T Consensus 123 i~~~sGt~a~~~~l~---~~~~~gd~Vl~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~le~ 180 (409)
T 3kki_A 123 LLSQSGWNANVGLLQ---TICQPNTNVYIDFFAHMSLWEGARYANA-------------------QAHPFMHNNCDHLRM 180 (409)
T ss_dssp EEESCHHHHHHHHHH---HHCCTTCEEEEETTSCHHHHHHHHHTTC-------------------EEEEECTTCHHHHHH
T ss_pred EEecchHHHHHHHHH---HhcCCCCEEEECCCcCHHHHHHHHHcCC-------------------eEEEecCCCHHHHHH
Confidence 888999999999998 4556666666777777766655554443 244556679999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-cccccchhhccCC--CCch--hh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL--TT 311 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~--~pDi--~t 311 (476)
.++++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ + +.|..+. ..+++ .+|+ .+
T Consensus 181 ~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s 253 (409)
T 3kki_A 181 LIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTAS 253 (409)
T ss_dssp HHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEE
T ss_pred HHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEee
Confidence 99853 3589999999999999998 99999999999999999999987 5 4554433 55666 4566 57
Q ss_pred hhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 312 ~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+||++++| .|++++++++++.+......+..+ .+.++++++++.++++.+++ ++++++++++.+++.+.|+++.
T Consensus 254 ~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 328 (409)
T 3kki_A 254 LAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFS-STLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-- 328 (409)
T ss_dssp SSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHS-BCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cchhhCCC--ceEEEECHHHHHHHHHhCcCcccc-CCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--
Confidence 99999965 699999999888765321222222 24688999999999998765 5778888899999998888752
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------CcceEEeC--CCcHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSDDIQ 461 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~~~~~~--~~t~e~i~ 461 (476)
+. +.+.+.++++.+.. .....++.+.|+++||++.+.. ...+|+++ .+|+++++
T Consensus 329 ~~----~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~ 391 (409)
T 3kki_A 329 LT----IRSESQIIGLETGD-------------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIA 391 (409)
T ss_dssp CC----CCCSSSEEEEEEES-------------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHH
T ss_pred Cc----cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHH
Confidence 22 23578888888742 2234578899999999986542 34567754 57999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|+++++.
T Consensus 392 ~~~~~l~~~l~~ 403 (409)
T 3kki_A 392 KIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 48
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=1.1e-33 Score=281.77 Aligned_cols=337 Identities=17% Similarity=0.195 Sum_probs=253.3
Q ss_pred CCeEEEeecCCEEEEcCCCEEEecccChhhccCC-CCcHHHHHHHHHHHHh-cCC-----CC-CCCHHHHHHHHHHHhhC
Q 011856 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK-GTS-----FG-APCLLENVLAEMVISAV 152 (476)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~l~~-~~~-----~~-~~~~~~~~la~~l~~~~ 152 (476)
.|+++.+++|+++| .+|++||||.++ .++| +.+|++.+++.+++++ +.. +. ...+...++++.+++++
T Consensus 22 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 97 (384)
T 1bs0_A 22 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 97 (384)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 37888999999999 899999999998 5588 4899999999999876 321 11 24577889999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 153 ~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
+.+++++++||++|+..+++. +.++++.|+++..+|+.+...+...|. +++.+|++|
T Consensus 98 -g~~~~i~~~sGt~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 154 (384)
T 1bs0_A 98 -GYSRALLFISGFAANQAVIAA---MMAKEDRIAADRLSHASLLEAASLSPS-------------------QLRRFAHND 154 (384)
T ss_dssp -TCSEEEEESCHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHHTSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEeCCcHHHHHHHHHH---hCCCCcEEEEcccccHHHHHHHHHcCC-------------------CEEEeCCCC
Confidence 455788888899999999984 456666777777788866655544333 345566779
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCCCCch
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL 309 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pDi 309 (476)
+++|++.+++..+.+++|+++++++++|.+.+ +++|.++|++||++||+||+|. |+ +.+... .+.++..+|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di 229 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPEL 229 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcE
Confidence 99999999865434788999989999999998 9999999999999999999995 43 233332 2456667898
Q ss_pred h--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011856 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 310 ~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (476)
+ ++||.++. +.|++++++++++.+...... +..+.+.|++.++++.++|+.+.+ ++..++++++.+++.+.|
T Consensus 230 ~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 230 LVVTFGKGFGV--SGAAVLCSSTVADYLLQFARH-LIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEEESSSTTSS--CCEEEEECHHHHHHHHHHCHH-HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccchhhc--cCcEEEeCHHHHHHHHHhchh-hhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7 89999983 459999999998887632111 222346899999999999988763 466777778888887777
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEeC--CC
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 455 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~~--~~ 455 (476)
+++ ++.. ..+.|.++++.+.. .....++.+.|+++||.+.++.. ..+|+++ .+
T Consensus 307 ~~~----g~~~-~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 307 QDL----PFTL-ADSCSAIQPLIVGD-------------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp TTS----SCEE-CSCCSSBCCEEEES-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred Hhc----CCcc-cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 654 3211 13567777777631 22346788999999999987642 3466654 45
Q ss_pred cHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKV 470 (476)
Q Consensus 456 t~e~i~~~~~~l~~~ 470 (476)
+++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999864
No 49
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=2.2e-34 Score=286.42 Aligned_cols=352 Identities=11% Similarity=0.053 Sum_probs=234.3
Q ss_pred CeEEEeecCCEEEEc-CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---CC
Q 011856 82 PIVFDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---SI 155 (476)
Q Consensus 82 p~~~~~~~G~~~~d~-dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~---~~ 155 (476)
+++..+++|+++||. +|+++|||..+ .+....+|+|.+++.+++.++. .|+ ...+++.++++++++.++ +.
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIA---DMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCS---SCSSCCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeecccc---cCCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 677889999999995 46899999988 3333479999999999998742 222 257888999999998764 57
Q ss_pred CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHH
Q 011856 156 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235 (476)
Q Consensus 156 e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 235 (476)
+++++++||++|++.+++.. ..+++.|++.+++||+....+ ...|..+...+.....+ ... -|+++
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------~~~---~d~~~ 148 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAF--TKENESVLVQPPIYPPFFEMV-TTNNRQLCVSPLQKQND--------TYA---IDFEH 148 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHH--CCTTCEEEECSSCCHHHHHHH-HHTTCEEEECCCEEETT--------EEE---CCHHH
T ss_pred hhEEEcCCHHHHHHHHHHHh--CCCCCEEEEcCCCcHHHHHHH-HHcCCEEEeccceecCC--------cEE---EcHHH
Confidence 89999999999999999953 345678898899998865443 33344332211110000 000 18999
Q ss_pred HHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhc-----cCCCCc
Q 011856 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY-----FGVTPD 308 (476)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~-----~g~~pD 308 (476)
|++.++ +++++|+++.+++++|.+.+ .+.+++|.++|++||++||+||+|+++ +.|... .... .+..+.
T Consensus 149 l~~~l~---~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 224 (383)
T 3kax_A 149 LEKQFQ---QGVKLMLLCSPHNPIGRVWK-KEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTIT 224 (383)
T ss_dssp HHHHHT---TTCCEEEEESSBTTTTBCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEE
T ss_pred HHHHhC---cCCeEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEE
Confidence 999994 25667777777777888775 445999999999999999999999988 655321 1111 233344
Q ss_pred hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Q 011856 309 LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 309 i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 384 (476)
+.++||.++ +|+|+||+++ ++++++.+... ....++++.|+++++++.++|+..++ ++..++++++.+++.+.|
T Consensus 225 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 302 (383)
T 3kax_A 225 CMAPSKTFNIAGLQASIIIIPNEKLRQAFTSI--QYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYI 302 (383)
T ss_dssp EECSHHHHTCGGGCCEEEECCCHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEChhhccCcchhheEEEeCCHHHHHHHHHH--HhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999 8999999988 68888877631 11233457899999999888864221 344555666666666666
Q ss_pred HHHhhhcCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCc
Q 011856 385 IDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHS 456 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t 456 (476)
++. .+....+.+.+.+ +++.+.... ....++.+.|+ ++||++.++. ...+|+++..+
T Consensus 303 ~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 367 (383)
T 3kax_A 303 KDH---IPTLSVMKPEGSFLLWIDCSALN------------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCP 367 (383)
T ss_dssp HHH---CTTCEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSC
T ss_pred Hhh---CCCceEecCCceEEEEEEccccC------------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCC
Confidence 653 2222233444444 446664211 01357888888 6899998752 24678988899
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVK 471 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~ 471 (476)
++++++++++|++++
T Consensus 368 ~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 368 RSVLEEILNRLRHTF 382 (383)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999876
No 50
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.5e-32 Score=274.16 Aligned_cols=353 Identities=13% Similarity=0.066 Sum_probs=228.4
Q ss_pred eEEEeecCCEEEEcCCC-----EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC-CCH-HHHHHHHHHHhhCC-
Q 011856 83 IVFDSVKGSHMWDIDGN-----EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCL-LENVLAEMVISAVP- 153 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-----~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~-~~~-~~~~la~~l~~~~~- 153 (476)
++-.+++|+++||.+|+ ++|||..+. +.++ .+|+|.+++.+++++.. .|.. ..+ ++.++++++.+.++
T Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~ 83 (390)
T 1d2f_A 7 VVDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYT 83 (390)
T ss_dssp -----------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCC
Confidence 45678999999999998 789998774 3466 78999999999987632 2221 356 77888888876553
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 154 --~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
..++|++++||++|++.+++.. ..++++|++.+++||++...+ ...|..+...+.....+ .+. .
T Consensus 84 ~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~--------~~~---~ 149 (390)
T 1d2f_A 84 AIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHTPAYDAFYKAI-EGNQRTVMPVALEKQAD--------GWF---C 149 (390)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEECEECSS--------SEE---C
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHH-HHCCCEEEEeecccCCC--------ccc---c
Confidence 4689999999999999999942 234578999999999965544 33343332211100000 000 3
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCC---
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP--- 307 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p--- 307 (476)
|+++|++.+++. ++++|+++..++++|.+.+. +++++|.++|++||++||+||+|++| +.|.... ....+.+
T Consensus 150 d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~ 225 (390)
T 1d2f_A 150 DMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTC-DELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW 225 (390)
T ss_dssp CHHHHHHHHTST--TEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred CHHHHHHHhccC--CCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence 899999999743 56777765556778887654 56999999999999999999999988 5553221 1222322
Q ss_pred c-hhhhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCccc-cCCC-CCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 011856 308 D-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGEL 380 (476)
Q Consensus 308 D-i~t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~-~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l 380 (476)
| +.++||.++ +|+|+||++++ +++++.+.. ... ..++ +.|+++++++.++|+...+ ++..++++++.+++
T Consensus 226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (390)
T 1d2f_A 226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI 302 (390)
T ss_dssp EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCccHhhcccChhheEEEECCHHHHHHHHH---HHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3 779999999 89999999885 788887752 222 3454 7789999999998875321 33445555666666
Q ss_pred HHHHHHHhhhcCCceEeeeece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEe
Q 011856 381 TQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTS 452 (476)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~ 452 (476)
.+.|++. ++....+++.|. ++++.+..... ...++.+.|+ ++||++.++. ...+|++
T Consensus 303 ~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris 367 (390)
T 1d2f_A 303 ADKMNAA---FPELNWQIPQSTYLAWLDLRPLNI------------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN 367 (390)
T ss_dssp HHHHHHH---CSSCCCCCCSBCSEEEEECGGGCC------------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHhh---CCCCEEecCCccEEEEEEccccCC------------CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEE
Confidence 6666552 221222344444 44677642100 1256788888 6899998763 2467898
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+..+++++++++++|+++++++
T Consensus 368 ~~~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 368 AGCPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999998764
No 51
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.4e-33 Score=281.47 Aligned_cols=351 Identities=12% Similarity=0.060 Sum_probs=244.9
Q ss_pred CeEEEeecCCEEEEcCCCEE-----EecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC-
Q 011856 82 PIVFDSVKGSHMWDIDGNEY-----IDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~-----iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~-~~~~~~~~la~~l~~~~~- 153 (476)
.++..+++|+++||.+|++| +||..+ .+..+.+|+|.+++.++++++. .++ +..+++.++++++++.++
T Consensus 10 ~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 10 EIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp SCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45567899999999987555 999887 5555579999999999998642 222 346788899999988764
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC-CCCCCCCCCCCceeeccC
Q 011856 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 --~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (476)
+.+++++++||++|++.+++.. ..+++.|++..++||+....+ ...|..+...+.. ...+ ...
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------~~~--- 152 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQEPVYSPFNSVV-KNNNRELIISPLQKLENG--------NYI--- 152 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHH-HHTTCEEEECCCEECTTS--------CEE---
T ss_pred CCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHH-HHcCCeEEeeeeeecCCC--------ceE---
Confidence 4789999999999999999953 345678888898998855443 3344433322211 0011 011
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhcc-----
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----- 303 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~----- 303 (476)
-|+++|++.+++ +++|+++.+++++|.+.+..+ +++|+++|++||++||+||+|++| +.|... ....+
T Consensus 153 ~d~~~l~~~l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (391)
T 4dq6_A 153 MDYEDIENKIKD----VKLFILCNPHNPVGRVWTKDE-LKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE 227 (391)
T ss_dssp CCHHHHHHHCTT----EEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred eeHHHHHHHhhc----CCEEEEECCCCCCCcCcCHHH-HHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence 189999999873 777777777778888766554 999999999999999999999988 655321 11111
Q ss_pred CCCCchhhhhhhcC-CCCcEEEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 379 (476)
Q Consensus 304 g~~pDi~t~sK~lg-~G~~iG~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 379 (476)
+....+.++||.++ +|+|+||+++++ ++++.+... .....+++.|+++++++.++++..++ ++..++++++.++
T Consensus 228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (391)
T 4dq6_A 228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA--FTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDF 305 (391)
T ss_dssp HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH--HHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 11223458999998 799999998875 888877631 12334567899999999999875321 3445555566666
Q ss_pred HHHHHHHHhhhcCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEE
Q 011856 380 LTQGIIDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFT 451 (476)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~ 451 (476)
+.+.|++. .+....+++.+.+ +++.+.... ....++.+.|+++ ||++.++. ...+|+
T Consensus 306 l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi 370 (391)
T 4dq6_A 306 AIKYINEN---MPKLKVRKPEGTYLLWVDFSALG------------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRI 370 (391)
T ss_dssp HHHHHHHH---CTTSEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEE
T ss_pred HHHHHHhh---CCCCEecCCCccEEEEEEhhhcC------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEE
Confidence 66666553 2222333444444 446664211 0125788899998 99998752 246889
Q ss_pred eCCCcHHHHHHHHHHHHHHH
Q 011856 452 SLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~ 471 (476)
++.++++++++++++|++++
T Consensus 371 s~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 371 NLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp ECCSCHHHHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999876
No 52
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=5.5e-33 Score=278.16 Aligned_cols=354 Identities=14% Similarity=0.081 Sum_probs=239.4
Q ss_pred eEEEeecCCEEEEcCCC-------EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC-CCHHHHHHHHHHHhhCC
Q 011856 83 IVFDSVKGSHMWDIDGN-------EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP 153 (476)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-------~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~-~~~~~~~la~~l~~~~~ 153 (476)
++..+++|+++||.||+ +++||..+. +.++ .+|.+.+++.+++++.. .|.. ..++++++++++.+.++
T Consensus 8 ~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g 84 (399)
T 1c7n_A 8 KISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQ 84 (399)
T ss_dssp CCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 44568999999998884 789998774 3344 68999999999987632 2221 34566667776665443
Q ss_pred ---CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 154 ---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 154 ---~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
+.++|++++||++|++.+++.. ..++++|++.+++||++...+. ..|..+...+.....+ .+.
T Consensus 85 ~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~--- 150 (399)
T 1c7n_A 85 WDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAIK-NQERKIIECELLEKDG--------YYT--- 150 (399)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHH-TTTCEEEECCCEEETT--------EEE---
T ss_pred CCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHH-HcCCEEEecccccCCC--------CEE---
Confidence 4679999999999999999953 2345789999999999654433 3343322211100000 011
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhcc-----
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----- 303 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----- 303 (476)
.|+++|++.+++. ++++|+++..++++|.+.+ ++++++|.++|++||++||+||+|++| +.+.. .....+
T Consensus 151 ~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 IDFQKLEKLSKDK--NNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp CCHHHHHHHHTCT--TEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred EcHHHHHHHhccC--CCcEEEEcCCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 3899999999742 5777777666777887764 567999999999999999999999988 55531 122111
Q ss_pred CCCCchhhhhhhcC-CCCcEEEEEec-HHHHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 011856 304 GVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 378 (476)
Q Consensus 304 g~~pDi~t~sK~lg-~G~~iG~~~~~-~~i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 378 (476)
+....+.++||.++ +|+|+||++++ +++++.+.. .....++ +.|+++++++.++|+...+ ++..++++++.+
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQR 304 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHH---HHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 22233458999999 89999999986 678887763 2222233 5789999999998875321 334445555666
Q ss_pred HHHHHHHHHhhhcCCceEeeeecee-EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceE
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGF 450 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~ 450 (476)
++.+.|++. ++....+++.|.+ +++.+.... ....++.+.|+ ++||++.++. ...+|
T Consensus 305 ~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (399)
T 1c7n_A 305 IVKDFFEVN---HPEIKAPLIEGTYLQWIDFRALK------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER 369 (399)
T ss_dssp HHHHHHHHH---CTTSBCCCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred HHHHHHHhh---CCCCeEecCCceEEEEEEcccCC------------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence 666666542 2222223444544 456764210 01256788887 6899998763 24678
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 451 TSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 451 ~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++..+++++++++++|+++++++
T Consensus 370 is~~~~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 370 INLAAPSSVIQESLERLNKALKDL 393 (399)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCHHHHHHHHHHHHHHHHHH
Confidence 988888999999999999998765
No 53
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-31 Score=264.56 Aligned_cols=338 Identities=15% Similarity=0.095 Sum_probs=224.5
Q ss_pred CeEEEeecCCEEEE-cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEE
Q 011856 82 PIVFDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVR 159 (476)
Q Consensus 82 p~~~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~ 159 (476)
++++.+|.+.+.++ .+|+++|||.++. ++++ .+|++.+++.+++++... ++.....++.++++++++ ..++++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~l~~~la~~~~~~~~~i~ 82 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGV--YPDVNYRRLNKSIENYLKLKDIGIV 82 (361)
T ss_dssp --------------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGS--CCCTTCHHHHHHHHHHHTCCSCEEE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHhCCCcceEE
Confidence 34555555555444 4899999999986 4555 689999999999987433 344455677888887776 578999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
+++||++|++.+++. + ++|++.+++||+....+ ...|..+...+.....+ -++++|++.
T Consensus 83 ~~~g~t~al~~~~~~---~---d~vi~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------------~~~~~l~~~ 141 (361)
T 3ftb_A 83 LGNGASEIIELSISL---F---EKILIIVPSYAEYEINA-KKHGVSVVFSYLDENMC--------------IDYEDIISK 141 (361)
T ss_dssp EESSHHHHHHHHHTT---C---SEEEEEESCCTHHHHHH-HHTTCEEEEEECCTTSC--------------CCHHHHHHH
T ss_pred EcCCHHHHHHHHHHH---c---CcEEEecCChHHHHHHH-HHcCCeEEEeecCcccC--------------CCHHHHHHh
Confidence 999999999999994 4 88999999999865443 33343332221111111 167899998
Q ss_pred HhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh---hhhhh
Q 011856 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKI 315 (476)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~---t~sK~ 315 (476)
+++ +++|+++.+++++|.+.+.++ +++|.++|++||++||+||+|+++ +..........+..++++ ++||.
T Consensus 142 l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 216 (361)
T 3ftb_A 142 IDD----VDSVIIGNPNNPNGGLINKEK-FIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKF 216 (361)
T ss_dssp TTT----CSEEEEETTBTTTTBCCCHHH-HHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSST
T ss_pred ccC----CCEEEEeCCCCCCCCCCCHHH-HHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhh
Confidence 874 455555555677788776555 999999999999999999999988 532222223333333433 79999
Q ss_pred cC-CCCcEEEEE-ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 316 IG-GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 316 lg-~G~~iG~~~-~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
++ +|+|+||++ +++++++.+... ..+++.|+++++++.++|+. ++..++.++.....++.|.+...+++.
T Consensus 217 ~~~~G~r~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~ 288 (361)
T 3ftb_A 217 FAMPGIRFGYGITNNKEIAAKIKAK-----QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIGF 288 (361)
T ss_dssp TSCGGGCCEEEEESCHHHHHHHHTT-----SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCcceeEEEeCCHHHHHHHHhh-----CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 799999998 899999988742 23568899999998888762 233344444444444444444444544
Q ss_pred ce-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHH
Q 011856 394 AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 466 (476)
Q Consensus 394 ~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~ 466 (476)
.. ..++.|.++++.+... ...++.+.|+++||++.++. ...+|+++. ++++++++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~ 353 (361)
T 3ftb_A 289 IKRVFSPHANFVLCRLENI--------------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRA 353 (361)
T ss_dssp EEEEECCSSSEEEEEESSS--------------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHH
T ss_pred CceecCCCCeEEEEEcCCC--------------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHH
Confidence 44 5667888888877431 12578889999999998863 245788765 88889999999
Q ss_pred HHHHHHH
Q 011856 467 AEKVKMR 473 (476)
Q Consensus 467 l~~~~~~ 473 (476)
|+++.+.
T Consensus 354 l~~~~~~ 360 (361)
T 3ftb_A 354 LKGVENN 360 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9887654
No 54
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1e-31 Score=271.57 Aligned_cols=353 Identities=14% Similarity=0.060 Sum_probs=235.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~ 168 (476)
.+|||..+. ..+| .+|.+.+++.+++++. ..|+. ..++++++++++.+.++ +.+ +|++++||++|+
T Consensus 38 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 478888875 3456 6899999999998761 22321 34667777777766443 467 999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~ 247 (476)
+.+++.+ ...++.|++.+++||++...+ ...|..+...+...... ........+ .|+++|++.++ +++
T Consensus 115 ~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~l~~~l~---~~~ 183 (429)
T 1yiz_A 115 YATIQGH--VDEGDEVIIIEPFFDCYEPMV-KAAGGIPRFIPLKPNKT-----GGTISSADWVLDNNELEALFN---EKT 183 (429)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECBCCCS-----SSSEEGGGCBCCHHHHHHHCC---TTE
T ss_pred HHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEeCCcccc-----cccccccCcccCHHHHHHHhc---cCc
Confidence 9999963 334678999999999965543 33444333222111000 000000111 38999999886 368
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhh----ccCCCCchhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE----YFGVTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~----~~g~~pDi~t~sK~lg-~G~ 320 (476)
++|+++++++++|.+.+ ++++++|.++|++||++||+||+|++| +.|.. .... ..+..+++.++||.++ +|+
T Consensus 184 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMD-RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred eEEEECCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 88888888888888765 667999999999999999999999988 55431 1111 2334445668999999 799
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
|+||+++++++++.+.. ..+..+++.|+++++++.++|+. ...+++.+++++..+..++.|.+...++++..
T Consensus 263 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 339 (429)
T 1yiz_A 263 KIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 339 (429)
T ss_dssp CCEEEESCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ceEEEEeCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999988762 33456788999999999999987 43244554444444444444433333334433
Q ss_pred EeeeeceeEEEEEecCCCc-CchhhcccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQH 462 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~~ 462 (476)
..+..|.++++.+...... .+.. ........++.+.|+ ++||++.++. ...+|+++..++++|++
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~ 417 (429)
T 1yiz_A 340 TVPQGGYFMVADWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQK 417 (429)
T ss_dssp EECSBSSEEEEECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHH
T ss_pred cCCCcceEEEEEcccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHH
Confidence 3344577888887532000 0000 000012356777776 7999998752 34678888889999999
Q ss_pred HHHHHHHHHH
Q 011856 463 TITAAEKVKM 472 (476)
Q Consensus 463 ~~~~l~~~~~ 472 (476)
++++|+++++
T Consensus 418 ~l~~l~~~l~ 427 (429)
T 1yiz_A 418 AAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcc
Confidence 9999998865
No 55
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=4.2e-32 Score=271.40 Aligned_cols=347 Identities=11% Similarity=0.008 Sum_probs=238.9
Q ss_pred CeEEEeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC----C
Q 011856 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP----S 154 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~----~ 154 (476)
|+....+.+.+++|.+|+++|||.++. ..++ .+|.+.+++.++++....|+. ..+++.++++++.+.++ +
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~ 89 (396)
T 3jtx_A 13 PFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD 89 (396)
T ss_dssp HHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 444446677778889999999999885 3444 689999999998865433432 35788889998887664 3
Q ss_pred CC-eEEEeCCHHHHHHHHHHHHHhccCC----ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc
Q 011856 155 IE-MVRFVNSGTEACMGVLRLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (476)
Q Consensus 155 ~e-~v~~~~sGseA~~~al~~ar~~~~~----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (476)
++ ++++++||++|++.+++.... .++ +.|++.+++||++... +...|..+...+. ...++.
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~-~~~~g~~~~~v~~-~~~g~~----------- 155 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGA-TLLGGGEIHFANC-PAPSFN----------- 155 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHH-HHHTTCEEEEEEC-CTTTCC-----------
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHH-HHHcCCEEEEeec-CCCCCc-----------
Confidence 67 999999999999999995422 222 6899999999886553 3334443332222 111110
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-ccchh-h-----
Q 011856 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQ-E----- 301 (476)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~~~-~----- 301 (476)
-|+++|++.+++ ++++|+++..+|++|.+.+.++ +++|.++|++||++||+||+|++| +.+ ..... .
T Consensus 156 -~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
T 3jtx_A 156 -PDWRSISEEVWK---RTKLVFVCSPNNPSGSVLDLDG-WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL 230 (396)
T ss_dssp -CCGGGSCHHHHH---TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred -cCHHHHHHhhcc---CcEEEEEECCCCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence 167888888875 5777777666777888876555 999999999999999999999988 655 22221 1
Q ss_pred --ccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011856 302 --YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (476)
Q Consensus 302 --~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (476)
..+..+++.++||.++ +|+|+||+++++++++.+.. .....+++.|+++++++.++|+. ++..++.++...
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~ 304 (396)
T 3jtx_A 231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL---YRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ 304 (396)
T ss_dssp TCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH---HHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred ccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1344455668999987 68999999999999988862 33445678899999999988863 333333333333
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------------
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------ 445 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------------ 445 (476)
..++.+.+...+. .....+..|.++++.+... ...++.+.|+ ++||++.++.
T Consensus 305 ~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~ 369 (396)
T 3jtx_A 305 EKFERVIPILQQV-FDVKLPDASFYIWLKVPDG--------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPG 369 (396)
T ss_dssp HHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTT
T ss_pred HHHHHHHHHHHhc-CCccCCCeeEEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCC
Confidence 3333333333322 1122234567777777421 1246777775 5699998752
Q ss_pred CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 446 FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...+|+++..+++++++++++|++++
T Consensus 370 ~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 370 EGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24678888889999999999998864
No 56
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=2.2e-31 Score=262.04 Aligned_cols=334 Identities=12% Similarity=0.042 Sum_probs=238.0
Q ss_pred ecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHH
Q 011856 88 VKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTE 166 (476)
Q Consensus 88 ~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGse 166 (476)
.+|.++++.+|+++|||.++. ++++ .+|++.+++.+++++. ..|+.....++.++++++++ ..+++++++||++
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 456777889999999999885 4555 7899999999988763 44567777899999999986 5789999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
|++.+++.. ...++.|++..++|+++... +...|..+...+.....++ |+++|++.++++ ++
T Consensus 80 a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~ 141 (354)
T 3ly1_A 80 GIRAAIEAY--ASLEAQLVIPELTYGDGEHF-AKIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SG 141 (354)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSSCTHHHHH-HHHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SS
T ss_pred HHHHHHHHH--hCCCCeEEECCCCchHHHHH-HHHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CC
Confidence 999999953 34567888888888875433 3334443322221111111 899999999853 25
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhh---cc-CCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE---YF-GVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~---~~-g~~pDi~t~sK~lg-~G 319 (476)
+++|+++.+++++|.+.+.++ +++|.++| +||++||+||+|.++ +.+.. .... .+ +....+.++||.++ +|
T Consensus 142 ~~~v~l~~p~nptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 219 (354)
T 3ly1_A 142 PSIVYLVNPNNPTGTITPADV-IEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG 219 (354)
T ss_dssp CEEEEEESSCTTTCCCCCHHH-HHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG
T ss_pred CCEEEEeCCCCCcCCCcCHHH-HHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh
Confidence 777777777777888887444 66677777 699999999999988 54421 1111 12 32233458999999 89
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
+|+||+++++++++.+.... ..++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..+
T Consensus 220 ~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~-~~~ 289 (354)
T 3ly1_A 220 MRVGYAVAHPTVIALMGRYV-----AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----KLP-YLP 289 (354)
T ss_dssp GCCEEEECCHHHHHHHGGGT-----TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCC
T ss_pred hhheeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCe-ECC
Confidence 99999999999999887421 2367899999999888863321 445566666666777666665 222 235
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+.|.++++.+.. ...++.+.|.++||++. +. ...+|+++. +++++++++++|++++++
T Consensus 290 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 290 SEGNFVFHQLVV---------------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCSSEEEEECSS---------------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCC---------------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 678888777642 12578888999999988 32 245788866 899999999999999875
No 57
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.98 E-value=7.7e-32 Score=270.39 Aligned_cols=356 Identities=10% Similarity=0.090 Sum_probs=232.2
Q ss_pred EEEeecCCEEEEcCCC---EEEecccChhhccCCC-CcHHHHHHHHHHHHhcC--CC---CCCCHHHHHHHHHHHhhCCC
Q 011856 84 VFDSVKGSHMWDIDGN---EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVPS 154 (476)
Q Consensus 84 ~~~~~~G~~~~d~dG~---~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~--~~---~~~~~~~~~la~~l~~~~~~ 154 (476)
++..++|.++++.+++ ++|||.+| ++.++ .+|+|++|+.+++++.. .| .+..+++.++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g---~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSC---CTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCc---CCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4667788777655444 59999987 55544 68999999999987531 12 23457888999999887752
Q ss_pred ---C-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC
Q 011856 155 ---I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (476)
Q Consensus 155 ---~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (476)
. +++++++||++|+..+++.. ..+++.|++.+++|+++.. .+...|..+...+....... .+.. .
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~-----~~~~---~ 166 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRK-LVEFFEGEMVPVQLDYVSAD-----ETRA---G 166 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEBCCCSSC-----CSSC---C
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHH-HHHHcCCEEEEeeccccccc-----CcCC---C
Confidence 3 79999999999999999842 3456788888888887543 33344443322211000000 0000 0
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccC----
Q 011856 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG---- 304 (476)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g---- 304 (476)
-|+++|++.+++ ++++|+++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.+.. .....++
T Consensus 167 ~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~ 242 (407)
T 3nra_A 167 LDLTGLEEAFKA---GARVFLFSNPNNPAGVVYS-AEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 242 (407)
T ss_dssp BCHHHHHHHHHT---TCCEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCG
T ss_pred cCHHHHHHHHhh---CCcEEEEcCCCCCCCcccC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccC
Confidence 189999999985 4555555555777887765 555999999999999999999999988 55432 2222222
Q ss_pred -CCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 305 -VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 305 -~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
....+.++||.++ +|+|+||+++++++++.+.. .....+++.++++++++.++|+. .+++.++..+..+.+++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~ 317 (407)
T 3nra_A 243 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK---LQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRD 317 (407)
T ss_dssp GGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHH---HHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHH
T ss_pred CcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHH---HHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHH
Confidence 2233558999999 79999999999999988763 33445667788888887776642 13344444444444444
Q ss_pred HHHHHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCC
Q 011856 383 GIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLA 454 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~ 454 (476)
.|.+...+++....+. ..|.++++.+.... ....++.+.|++ +||++.++. ...+|+++.
T Consensus 318 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 318 ELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHTSTTCBCCCCSBSSEECCBCCCBS------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHhcCCCceeccCCeeEEEEEeCCCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 4444333342222223 33566666653211 112567788875 599998753 346789888
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 011856 455 HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+++++++++++|+++++++
T Consensus 386 ~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 386 QDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998875
No 58
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.98 E-value=8.2e-31 Score=263.01 Aligned_cols=339 Identities=16% Similarity=0.121 Sum_probs=238.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
|+++|||.++.. +..++.++.+.+++.+++++.. .|+. ..+++.++++++.+.++ ..+++++++||++|+
T Consensus 33 g~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDP-DPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCC-CTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCC-CchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 678899988764 3457889999999999988631 1322 24667777777766443 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHh----cCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNK 244 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~----~~~ 244 (476)
+.+++.+ ...++.|++.+++||+.... +...|..+...+... .+ .|+++|++.++ +.
T Consensus 112 ~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~- 172 (407)
T 2zc0_A 112 DLLGRVL--IDPGDVVITENPSYINTLLA-FEQLGAKIEGVPVDN-DG--------------MRVDLLEEKIKELKAKG- 172 (407)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT-
T ss_pred HHHHHHh--cCCCCEEEEeCCChHHHHHH-HHHcCCEEEEcccCC-CC--------------CCHHHHHHHHHhhhccc-
Confidence 9999964 33567899999999985443 333333222111100 00 28999999997 42
Q ss_pred CCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCC---CCchhhhhhhcCC
Q 011856 245 GEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGV---TPDLTTLGKIIGG 318 (476)
Q Consensus 245 ~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~---~pDi~t~sK~lg~ 318 (476)
.++++|+ ++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.+.. .....++. ..++.++||.+++
T Consensus 173 ~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 251 (407)
T 2zc0_A 173 QKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGT 251 (407)
T ss_dssp CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCT
T ss_pred CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCC
Confidence 2577765 4555667888765 666999999999999999999999988 54432 22222322 2345589999999
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL----KE-PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
|+|+|++++++++++.+.. .....+++.+++++.++.++|+.. .. ++..++++++.+++.+.|++......
T Consensus 252 G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 327 (407)
T 2zc0_A 252 GFRIGWIIAEGEILKKVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAE- 327 (407)
T ss_dssp TSCCEEEECCHHHHHHHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSC-
T ss_pred CcceEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE-
Confidence 9999999999999888763 223445677899999999988753 22 66777888888888888876422221
Q ss_pred ceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC--------CcceEEeCCC-cHHHHHHH
Q 011856 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------FEAGFTSLAH-SSDDIQHT 463 (476)
Q Consensus 394 ~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~--------~~~~~~~~~~-t~e~i~~~ 463 (476)
...+..|.++++.+... . ...++.+.|+++ ||++.++. ...+|+++.. ++++++++
T Consensus 328 -~~~~~~~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~ 393 (407)
T 2zc0_A 328 -FTKPIAGMFVMFFLPEG-A------------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIG 393 (407)
T ss_dssp -BCCCSBSSEEEEECSTT-C------------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHH
T ss_pred -EecCCCcEEEEEEcCCC-C------------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHH
Confidence 11234567778877421 0 125688888888 99998752 2457887665 79999999
Q ss_pred HHHHHHHHHHhh
Q 011856 464 ITAAEKVKMRFL 475 (476)
Q Consensus 464 ~~~l~~~~~~~~ 475 (476)
+++|++++++++
T Consensus 394 ~~~l~~~l~~~~ 405 (407)
T 2zc0_A 394 IKKLAKLYKEKF 405 (407)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 59
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.98 E-value=5e-31 Score=260.87 Aligned_cols=326 Identities=13% Similarity=0.075 Sum_probs=230.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~a 175 (476)
.+.+|||.++. +.++ .+|+|.+++.+++.+...++|+.....+++++++++++ ..+++++++||++|++.+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~ 105 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA 105 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence 35789999885 4444 78999999999988532334444455778888888774 3479999999999999999942
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
...+++|++.+++|+++...+. ..|..+...+..... ..|+++|++.++++ ++++|+++.+
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~--------------~~d~~~l~~~l~~~--~~~~v~~~~~ 166 (367)
T 3euc_A 106 --ARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLRADF--------------TLDRGAMLAAMAEH--QPAIVYLAYP 166 (367)
T ss_dssp --CCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECCTTS--------------CCCHHHHHHHHHHH--CCSEEEEESS
T ss_pred --cCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCCCCC--------------CCCHHHHHHHhhcc--CCCEEEEcCC
Confidence 3456789999999999765543 333322221111100 12899999999853 4667777777
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 332 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~ 332 (476)
++++|.+.+.++ +++|.++|++| |+++|+||+|++| +.+........+...++.++||...+|+|+||++++++++
T Consensus 167 ~nptG~~~~~~~-l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 167 NNPTGNLFDAAD-MEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CTTTCCCCCHHH-HHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHH
T ss_pred CCCCCCCCCHHH-HHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHH
Confidence 777888775444 99999999999 9999999999988 4443333333444455668999933799999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
+.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++ ++.....++.|.++++.+.
T Consensus 246 ~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~~~~~-- 314 (367)
T 3euc_A 246 EQLDKV-----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA----HGGVTVFPSAANFLLARVP-- 314 (367)
T ss_dssp HHHGGG-----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT----STTCEECCCSSSEEEEECS--
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCeEEEEECC--
Confidence 988742 23567899999999998875211 33444555555555555543 4322345667788877763
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC------cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
...++.+.|.++||++.++.. ..+|+++. +++|+++++++|+++++
T Consensus 315 --------------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 --------------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp --------------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred --------------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 125678889999999987642 45788866 99999999999998764
No 60
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.98 E-value=3.2e-31 Score=264.64 Aligned_cols=335 Identities=15% Similarity=0.101 Sum_probs=223.2
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
.+|+++|||.+|. ..++ .+|++.+++.++++++. .|+. ..++++++++++.+.++ +.++|++++||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 3688899999886 3444 38899999999887632 2221 34566777777765433 578999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
+.+++.. ...++.|++.+++|++.... +...|..+...+.....++ .-|+++|++. +++
T Consensus 105 ~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~------~~~ 163 (391)
T 3h14_A 105 LLAFTAL--FDSGDRVGIGAPGYPSYRQI-LRALGLVPVDLPTAPENRL------------QPVPADFAGL------DLA 163 (391)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHHTTCEEEEEECCGGGTT------------SCCHHHHTTS------CCS
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHHH-HHHcCCEEEEeecCcccCC------------CCCHHHHHhc------CCe
Confidence 9999953 34567899999999886543 3333432222111100000 0167777654 456
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccCCCCchhhhhhhcC-CCCcEEEE
Q 011856 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAY 325 (476)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pDi~t~sK~lg-~G~~iG~~ 325 (476)
+|+++.+++++|.+.+.++ +++|.++|++||++||+||+|++| +.+... ..+..+....+.++||.+| +|+|+||+
T Consensus 164 ~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 242 (391)
T 3h14_A 164 GLMVASPANPTGTMLDHAA-MGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWM 242 (391)
T ss_dssp EEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEE
T ss_pred EEEECCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEE
Confidence 6666666778888776555 999999999999999999999988 555322 2222121222337999998 89999999
Q ss_pred EecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee-cee
Q 011856 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGM 403 (476)
Q Consensus 326 ~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~ 403 (476)
++++++++.+. ......+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. +....+++. +.+
T Consensus 243 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~ 315 (391)
T 3h14_A 243 VVPEDQVRVVE---RIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA----GFTRIAPPDGAFY 315 (391)
T ss_dssp ECCGGGHHHHH---HHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCBCCCCBTTE
T ss_pred EeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCCcccCCCeeEE
Confidence 99999988876 233455778899999998888861111 334455555555555555543 433323333 456
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC-------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++.+.... ....++.+.|+++ ||++.++. ...+|+++..+++++++++++|++++++.
T Consensus 316 ~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 316 VYADVSDLT------------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp EEEECTTTC------------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccC------------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 666663211 0125677887775 99998752 23578988889999999999999998753
No 61
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.96 E-value=1.9e-34 Score=288.20 Aligned_cols=352 Identities=11% Similarity=0.016 Sum_probs=236.0
Q ss_pred CeEEEeecCCEEEEcCCC--EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---
Q 011856 82 PIVFDSVKGSHMWDIDGN--EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP--- 153 (476)
Q Consensus 82 p~~~~~~~G~~~~d~dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~--- 153 (476)
.++..+++|+++||.+|+ +++||..+. ..++ .+|++.+++.+++.++. ++| ..+++.++++++.+.++
T Consensus 12 ~~~~~~~~g~~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~-~~y~~~~~~l~~~la~~l~~~~g~~~ 87 (392)
T 3b1d_A 12 TAPNRLSHHTYKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLV-YGYTYASDELLQAVLDWEKSEHQYSF 87 (392)
Confidence 456678999999999999 999998873 2334 58999999999887532 222 23455566666655443
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.++|++++||++|++.+++.. ..++++|++.+++||++...+.. .|..+...+.....+ .+. .|+
T Consensus 88 ~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~g--------~~~---~d~ 153 (392)
T 3b1d_A 88 DKEDIVFVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVRL-NNRKLVSNSLKEENG--------LFQ---IDF 153 (392)
Confidence 4689999999999999999953 34567899999999997654332 232222111100000 000 167
Q ss_pred HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhhc--cCCC
Q 011856 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEY--FGVT 306 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~--~g~~ 306 (476)
++|++.+++. ++++|+++..++++|.+.+. +++++|+++|++||++||+||+|++| +.+.. ..... .+..
T Consensus 154 ~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~-~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 230 (392)
T 3b1d_A 154 EQLENDIVEN--DVKLYLLCNPHNPGGRVWER-EVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFA 230 (392)
Confidence 8888888632 56677777667778877654 45999999999999999999999988 55421 11111 3344
Q ss_pred CchhhhhhhcC-CCCcEEEEEecH-HHHHhhcCCCCccccCC-CCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 011856 307 PDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELT 381 (476)
Q Consensus 307 pDi~t~sK~lg-~G~~iG~~~~~~-~i~~~l~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~ 381 (476)
+++.++||+++ +|+|+||+++++ ++++.+... ....+ .+.|+++++++.++|+...+ ++..++++++.+++.
T Consensus 231 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 231 LVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQ---QLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAV 307 (392)
Confidence 56678999999 899999999865 588877632 22222 24688999999888874322 344455555555555
Q ss_pred HHHHHHhhhcCCceEeeeeceeE-EEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeC
Q 011856 382 QGIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSL 453 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~ 453 (476)
+.|++. .+....+++.|.++ ++.+... .....++.+.|+ ++||++.++. ...+|+++
T Consensus 308 ~~l~~~---~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~ 372 (392)
T 3b1d_A 308 EYFAQE---APRLKVMKPQGTYLIWLDFSDY------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNI 372 (392)
Confidence 555541 22222344555554 4666321 011246778886 7899998763 23578888
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 011856 454 AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 454 ~~t~e~i~~~~~~l~~~~~ 472 (476)
..+++++++++++|+++++
T Consensus 373 ~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 373 AAPKSLVEEICKRIVCCLP 391 (392)
Confidence 8889999999999998875
No 62
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.98 E-value=2.1e-31 Score=263.94 Aligned_cols=320 Identities=14% Similarity=0.130 Sum_probs=230.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
+|++++||.++. ..+|+ +|.+.+++.++++++. .|+. ..+++.++++++.+.++ +++++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 467789998875 35665 8999999999987642 2321 34677788888776542 5689999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ..++++|++.+++||+....+ ...|. .++.+| .|+++|++.+++ ++++
T Consensus 104 ~~~~~~--~~~gd~vl~~~p~~~~~~~~~-~~~g~-------------------~~~~v~-~d~~~l~~~l~~---~~~~ 157 (370)
T 2z61_A 104 FALSSI--IDDGDEVLIQNPCYPCYKNFI-RFLGA-------------------KPVFCD-FTVESLEEALSD---KTKA 157 (370)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHHH-HHTTC-------------------EEEEEC-SSHHHHHHHCCS---SEEE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHHHHH-HHcCC-------------------EEEEeC-CCHHHHHHhccc---CceE
Confidence 999963 345578999999999865443 22332 133334 589999999864 5777
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc-CC-CCc--hhhhhhhcC-CCCcEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-GV-TPD--LTTLGKIIG-GGLPVG 323 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~-g~-~pD--i~t~sK~lg-~G~~iG 323 (476)
|+++++++++|.+.+ ++ |.++|++||++||+||+|+++ +.|.......+ +. ..| +.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 777777778899888 66 999999999999999999988 54432222222 11 123 347999998 799999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
|+++++++++.+.. .....+++.|+++++++.++|+. ..+ ++..++++++.+++.+.|+++ ++....+..
T Consensus 233 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 305 (370)
T 2z61_A 233 YVISNDEIIEAILK---LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIG 305 (370)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCB
T ss_pred EEEECHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCc
Confidence 99999999888762 33445678899999998888865 222 456667777778888777764 222111233
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
|.++++.+.. ...++.+.|+ ++||++.++. ...+|+++.++++++++++++|+++++
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE---------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS---------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC---------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5555555531 1256788887 7899998752 346899888999999999999998875
No 63
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.98 E-value=2.5e-31 Score=263.94 Aligned_cols=331 Identities=15% Similarity=0.081 Sum_probs=222.3
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHhhC----C---CCC-eEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC-LLENVLAEMVISAV----P---SIE-MVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~-~~~~~la~~l~~~~----~---~~e-~v~~~~sGseA 167 (476)
+|+++|||.++. ..+| .+|.+.+++.+++++...++|+. ....++.+.+++++ + .++ +|++++||++|
T Consensus 23 ~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (376)
T 2dou_A 23 RGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEG 99 (376)
T ss_dssp TTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHH
T ss_pred cCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 578899999885 3566 58999999999886532334444 23445555555543 4 235 99999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.+++.. ..+++.|++.+++||++...+ ...|..+...+. ..++ ..|+++|++.++. ++
T Consensus 100 ~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~~~~--~~~~------------~~d~~~l~~~l~~---~~ 159 (376)
T 2dou_A 100 LAHLLLAL--TEPEDLLLLPEVAYPSYFGAA-RVASLRTFLIPL--REDG------------LADLKAVPEGVWR---EA 159 (376)
T ss_dssp HHHHHHHH--CCTTCEEEEESSCCHHHHHHH-HHTTCEEEEECB--CTTS------------SBCGGGSCHHHHH---HE
T ss_pred HHHHHHHh--cCCCCEEEECCCCcHhHHHHH-HHcCCEEEEeeC--CCCC------------CCCHHHHHHhhcc---Cc
Confidence 99999953 234578999999999865543 333443322211 1111 0267888888863 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhc---cCCCCchhhhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY---FGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~---~g~~pDi~t~sK~lg-~G~~ 321 (476)
++|+++..++++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. ..... .+....+.++||.++ +|+|
T Consensus 160 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 160 KVLLLNYPNNPTGAVAD-WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp EEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCcCccCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhhe
Confidence 77777766677887764 566999999999999999999999988 54422 11222 222334558999998 7999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-e
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-I 400 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~ 400 (476)
+||+++++++++.+.. .....+++.|+++++++.++|+.. ++..++.++..+..++.|.+...++ + ..+++ .
T Consensus 239 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~-~~~~~~~ 311 (376)
T 2dou_A 239 LGFALGSEEALARLER---VKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV-L-SLLPPRA 311 (376)
T ss_dssp CEEEEECHHHHHHHHH---HHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT-S-EECCCCB
T ss_pred eEEEecCHHHHHHHHH---HHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh-c-CccCCCe
Confidence 9999999999988763 233445677899999988888642 2233333333333333343333333 2 22233 4
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
|.++++.+... ....++.+.|+++||++.++. ...+|+++..+++++++++++|++++
T Consensus 312 ~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 312 TMYLWGRLPEG-------------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp SSEEEEECCTT-------------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 56677777421 012468889999999998753 34678988889999999999998764
No 64
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.1e-31 Score=267.90 Aligned_cols=352 Identities=13% Similarity=0.090 Sum_probs=238.6
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~-~-~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
.|+++|||..|.. .++ .++.+.+++.+++++ + ..|+. ..+++.++++++.+.++ ++++|++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4567899988852 344 689999999999875 2 22322 24677888888876654 357899999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC-CCCCCCCCceeeccC-CCHHHHHHHHhcCCCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (476)
+.+++.. ..+++.|++.+++||++... +...|..+...+..... +... ......+ .|+++|++.++ ++
T Consensus 132 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~~----~~~~~~~~~d~~~l~~~l~---~~ 201 (447)
T 3b46_A 132 LSCLMGL--LNAGDEVIVFEPFFDQYIPN-IELCGGKVVYVPINPPKELDQR----NTRGEEWTIDFEQFEKAIT---SK 201 (447)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEEEECCGGGGTS----CBCSTTSEECHHHHHTTCC---TT
T ss_pred HHHHHHH--cCCCCEEEEeCCCchhHHHH-HHHcCCEEEEEeCCCccccccc----cccccCcccCHHHHHHhhc---cC
Confidence 9999953 34568899999999985543 34444433322111000 0000 0000011 27999998886 36
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc---hh--hccCCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG---AQ--EYFGVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~---~~--~~~g~~pDi~t~sK~lg-~G 319 (476)
+++|++++++|++|.+.+ ++++++|.++|++||++||+||+|+++ +.+... .. +..+..+.+.++||.++ +|
T Consensus 202 ~~~v~l~~p~nptG~~~~-~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFT-REELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 788888877788888765 667999999999999999999999988 554211 11 12355556678999999 89
Q ss_pred CcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 320 LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 320 ~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
+|+||+++ ++++++.+.. ..+..+++.+++.++++.++|+.... ++..++++++.+++.+.|+++ ++.
T Consensus 281 ~riG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 353 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAAK---AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL----GLP 353 (447)
T ss_dssp SCCEEEECSCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----TCC
T ss_pred hhhEEEEeCCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCe
Confidence 99999999 9999988762 33445778899999999999987532 345566666677777776664 333
Q ss_pred eEeeeeceeEEEEEecCCCc-C--chhhcccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVY-N--FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDD 459 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~ 459 (476)
...+..|.++++.+...... . +... ..+.....++.+.|+ ++||++.|+. ...+|+++..++++
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~ 432 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEE-ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAY 432 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGG-GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHH
T ss_pred ecCCCeeEEEEEecccccCccccccccc-cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHH
Confidence 33355677888877431000 0 0000 000112356777776 5899998763 34688988889999
Q ss_pred HHHHHHHHHHH
Q 011856 460 IQHTITAAEKV 470 (476)
Q Consensus 460 i~~~~~~l~~~ 470 (476)
|++++++|+++
T Consensus 433 l~~~~~~l~~~ 443 (447)
T 3b46_A 433 LENAVERLKLL 443 (447)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999873
No 65
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=4.4e-31 Score=262.10 Aligned_cols=328 Identities=12% Similarity=-0.004 Sum_probs=226.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
.+| ++|||.++. +.++ .+|.+.+++.+++.....|+. ..+++.++++++.+.++ ..+++++++||++|++
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 356 889999885 4555 689999999988754333432 35778888888877654 5689999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.....++++.|++.+++|+++...+ ...|..+...+.....++ ++ ++++.+.+ ++++
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~ 157 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAA-KFIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDL 157 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHH-HHTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHH-HHcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCE
Confidence 99996422122678999999999865443 333433222111111111 11 45555553 4556
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-h--------ccCCCCchhhhhhhcC-C
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-G 318 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~--------~~g~~pDi~t~sK~lg-~ 318 (476)
|+++.+++++|.+.+.+ .+++|.++|++||++||+||+|++| +.+..... . ..+....+.++||.+| +
T Consensus 158 v~~~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 158 VILNSPNNPTGRTLSLE-ELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEECSSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEcCCCCCcCCCCCHH-HHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 66655577788877544 4999999999999999999999988 55532222 1 2344445668999997 7
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
|+|+||+++++++++.+.. .....+++.|+++++++.++|+. .+..++.++.....++.+.+... ++. .+
T Consensus 237 G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~ 306 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKA---FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NTL--IY 306 (376)
T ss_dssp GGCCEEEEECHHHHHHHHH---HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TCC--CC
T ss_pred cceeEEEeeCHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC
Confidence 9999999999999988863 33445778899999999988873 33344444444444444444332 222 45
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
..|.++++.+.+ ..++.+.|++ +||++.++. ...+|+++..+++++++++++|++
T Consensus 307 ~~~~~~~~~~~~----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 307 PYSFYVYLPVQN----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376)
T ss_dssp SBSSEEEEECSC----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEECCC----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 677788877631 2567888887 899998752 346788887899999999999999
Q ss_pred HHHH
Q 011856 470 VKMR 473 (476)
Q Consensus 470 ~~~~ 473 (476)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8864
No 66
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.97 E-value=2.1e-30 Score=258.36 Aligned_cols=338 Identities=12% Similarity=0.122 Sum_probs=233.3
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
+|++++||.++. ..++ .+|.+.+++.++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|++
T Consensus 28 ~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 678899999885 3455 58999999999987642 2322 34677778887776543 4679999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.+ ..+++.|++.+++||++... +...|..+...+.....+. ..|+++|++.+++ ++++
T Consensus 105 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~ 166 (388)
T 1j32_A 105 NLMLAM--IEPGDEVIIPAPFWVSYPEM-VKLAEGTPVILPTTVETQF------------KVSPEQIRQAITP---KTKL 166 (388)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCGGGTT------------CCCHHHHHHHCCT---TEEE
T ss_pred HHHHHh--cCCCCEEEEcCCCChhHHHH-HHHcCCEEEEecCCcccCC------------CCCHHHHHHhcCc---CceE
Confidence 999964 34567899999999885543 3344443322221100000 0179999999863 5788
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhh--ccCCCCchhhhhhhcC-CCCc
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQE--YFGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~--~~g~~pDi~t~sK~lg-~G~~ 321 (476)
|+++++++++|.+.+ ++.+++|.++|++||+++|+||+|+++ +.+.. .... ..+..+++.++||.++ +|+|
T Consensus 167 v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 245 (388)
T 1j32_A 167 LVFNTPSNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccc
Confidence 887777777888765 566999999999999999999999988 54421 1111 1334455668999998 7999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+|++++++++++.+.. .....+++.+++++.++.++|+...+ ++..++++++.+++.+.|+++ . ++....+.
T Consensus 246 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~ 319 (388)
T 1j32_A 246 VGFLAGPVPLVKAATK---IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM-P--GLECPKPD 319 (388)
T ss_dssp CEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-T--TCBCCCCC
T ss_pred eEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCCC
Confidence 9999999999888762 33455778899999998888873221 334555666666666666543 1 22211122
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.|.++++.+... .....++.+.|++ +||++.++. ...+|+++.++++++++++++|+++++++
T Consensus 320 ~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKT------------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGG------------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC------------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 344444444210 0012567888876 799998763 35689988899999999999999999875
No 67
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=9.7e-31 Score=265.68 Aligned_cols=336 Identities=13% Similarity=0.135 Sum_probs=231.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~---~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~ 168 (476)
+..+|||.+|.. +..++.++++.+++.+++++. ..|+. ..++++++++++.+.++ +.++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p-~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLP-NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCC-CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCC-CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 346899988864 334578899999999988763 22322 34566677777654444 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC----CCHHHHHHHHh---
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE--- 241 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~--- 241 (476)
+.+++.. ...++.|++.+++|+++...+ ...|..+ +.+|. .|+++|++.++
T Consensus 154 ~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~-~~~g~~~-------------------~~v~~~~~g~d~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVF--LNPGDIVVVEAPTYLAALQAF-NFYEPQY-------------------IQIPLDDEGMKVEILEEKLKELK 211 (448)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEE-------------------EEEEEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHHHHHH-HHcCCEE-------------------EEeccCCCCCCHHHHHHHHhhhh
Confidence 9999953 345678999999999865443 2233322 22221 27999999997
Q ss_pred -cCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhhccCCCCchhhhhh
Q 011856 242 -NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYFGVTPDLTTLGK 314 (476)
Q Consensus 242 -~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~~g~~pDi~t~sK 314 (476)
+. .++++|++.|+ +|++|.+. +.+++++|.++|++||++||+||+|+++ +.|.. ...+..+...++.+|||
T Consensus 212 ~~~-~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 212 SQG-KKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp HTT-CCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred ccC-CCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchh
Confidence 42 36788766554 45577765 5667999999999999999999999888 54431 12222233445668999
Q ss_pred hcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 315 ~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
.+++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. .+ ++..++++++.+++.+.|++....
T Consensus 290 ~~~~GlriG~v~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 366 (448)
T 3aow_A 290 ILAPGFRIGWMVGDPGIIRKMEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPE 366 (448)
T ss_dssp TTCGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hccccccEEEEEeCHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988762 223345677999999988888642 11 233444445556666666543110
Q ss_pred cCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCC-cHHHHH
Q 011856 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 461 (476)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~-t~e~i~ 461 (476)
++....+..|.++++.+... ....++.+.|+++||++.|+. ...+|+++.. ++++|+
T Consensus 367 -g~~~~~p~~g~~~~v~~~~~-------------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~ 432 (448)
T 3aow_A 367 -GVKWTKPEGGMFIWVTLPDG-------------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIM 432 (448)
T ss_dssp -TCEECCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHH
T ss_pred -CeEEeCCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHH
Confidence 22222234577788877421 012578889999999998752 3457887665 799999
Q ss_pred HHHHHHHHHHHHhh
Q 011856 462 HTITAAEKVKMRFL 475 (476)
Q Consensus 462 ~~~~~l~~~~~~~~ 475 (476)
+++++|++++++..
T Consensus 433 ~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 433 EGIKRLAETIKEEL 446 (448)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 68
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=5.3e-31 Score=264.98 Aligned_cols=339 Identities=13% Similarity=0.090 Sum_probs=226.8
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 166 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~-e~v~~~~sGse 166 (476)
.+|+++|||.++. +.++ .+|.+.+++.+++++...++| ..+++.++++++.+.++ ++ +++++++||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4688899999885 4556 789999999988765411222 23566667777655433 35 69999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
|++.+++.. ..+++.|++.+++||++...+. ..|..+...+.....++ . .|+++|++.++. +
T Consensus 111 a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~i~~---~ 172 (412)
T 2x5d_A 111 GLAHLMLAT--LDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDF---------F---NELERAIRESIP---K 172 (412)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCH---------H---HHHHHHHHTEES---C
T ss_pred HHHHHHHHh--CCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCC---------C---CCHHHHHHhccc---C
Confidence 999999953 3345789999999998655443 33433222111100000 0 157788887763 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-ch-hhc---cCCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEY---FGVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~---~g~~pDi~t~sK~lg-~G 319 (476)
+++|+++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. .. ... .+....+.++||.++ +|
T Consensus 173 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQCVE-LDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 566666444566777654 566999999999999999999999988 54431 11 111 222333458999999 89
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+|+||+++++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|++. ++.. +
T Consensus 252 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~ 323 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALAR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMV-E 323 (412)
T ss_dssp SCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCC-C
T ss_pred cceEEEEcCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEe-c
Confidence 999999999999988762 33445678899999999988874322 445666667777777777765 2221 2
Q ss_pred ee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 398 GY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 398 ~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
++ .|.++++.+... .. .....++.+.|++ +||++.++. ...+|+++..+++++++++++|++
T Consensus 324 ~~~~g~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 324 NPKASMYVWAKIPEP-YA---------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKA 393 (412)
T ss_dssp CCSBSSEEEEECCTT-TG---------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEEcCCc-cC---------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 33 355677776321 00 0012567788865 699998763 346789888899999999999999
Q ss_pred HHHHh
Q 011856 470 VKMRF 474 (476)
Q Consensus 470 ~~~~~ 474 (476)
+++++
T Consensus 394 ~l~~~ 398 (412)
T 2x5d_A 394 MFRAD 398 (412)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 98764
No 69
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.97 E-value=3.9e-31 Score=261.46 Aligned_cols=327 Identities=16% Similarity=0.118 Sum_probs=216.5
Q ss_pred EcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHH
Q 011856 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLR 173 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~ 173 (476)
+.||+++|||.++. +++| .+|++.+++.+++++...| +.....++.+.++++++ ..+++++++||+++++.+++
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~ 94 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS 94 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHH
Confidence 46788999999886 4577 7899999999988653333 33334677777777775 46799999999999999999
Q ss_pred HHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
.+ .+++|++.+++||++...+. ..|..+...+.....++ +.++++.+.+. +++++|++.
T Consensus 95 ~~----~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~-------------~~l~~~~~~~~---~~~~~v~i~ 153 (364)
T 1lc5_A 95 GL----KPRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGW-------------QLTDAILEALT---PDLDCLFLC 153 (364)
T ss_dssp HH----CCSEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTT-------------CCCTTHHHHCC---TTCCEEEEE
T ss_pred Hc----CCCeEEEeCCCcHHHHHHHH-HcCCeEEEEeCCccccc-------------chhHHHHHhcc---CCCCEEEEe
Confidence 64 44889999999999655443 33433222111100011 00233333332 245555543
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhc---cCCCCchhhhhhhcC-CCCcEEEEE-e
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYG-G 327 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~---~g~~pDi~t~sK~lg-~G~~iG~~~-~ 327 (476)
..++++|.+. +.+++++|.++|++||++||+||+|++| +.+.. ..+. ++....+.++||.++ +|+|+||++ +
T Consensus 154 ~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 231 (364)
T 1lc5_A 154 TPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETG-FIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS 231 (364)
T ss_dssp SSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC-SGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred CCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccc-hhhHhccCCCEEEEEECchhhcCCccceEEEEEC
Confidence 3366677765 5667999999999999999999999888 43321 1222 222233458999999 899999999 9
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
++++++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|+ +++.....++.|.++++
T Consensus 232 ~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~g~~~~~ 302 (364)
T 1lc5_A 232 DDAAMARMRRQ-----QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALC----QLPLLTVYPGRANYLLL 302 (364)
T ss_dssp CHHHHHHHHHH-----SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHH----TSTTEEECCCSSSEEEE
T ss_pred CHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----cCCCCEECCCCCeEEEE
Confidence 99998887631 23678899999988888763110 2233334444444544444 34323334567888887
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+..+ ..++.+.|+++||++.++. ...+|+++. +++++++++++|+++++++
T Consensus 303 ~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 303 RCERE---------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp EESCT---------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC---
T ss_pred ECCCc---------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhcc
Confidence 76421 1357788889999998864 245788865 6888999999999887653
No 70
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=5.2e-30 Score=256.40 Aligned_cols=330 Identities=13% Similarity=0.090 Sum_probs=232.2
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc-----CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-----~~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGse 166 (476)
|+++|||..+ ++....+|.+.+++.+++++. ..|+. ..+++.++++++.+.++ ++++|++++||++
T Consensus 34 ~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 4678999987 444447899999999998763 22321 24677788888876643 5789999999999
Q ss_pred HHHHHHHHHHhccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCC-CCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|+..+++.. ...+ +.|++.+++|+++...+ ...|..+...+... ..++ |+++|++.+++
T Consensus 111 al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~~-- 171 (398)
T 3ele_A 111 SLSICFRAL--TSDAYDEFITIAPYFPEYKVFV-NAAGARLVEVPADTEHFQI--------------DFDALEERINA-- 171 (398)
T ss_dssp HHHHHHHHH--CCSTTCEEEEESSCCTHHHHHH-HHTTCEEEEECCCTTTSSC--------------CHHHHHHTCCT--
T ss_pred HHHHHHHHH--cCCCCCEEEEeCCCchhhHHHH-HHcCCEEEEEecCCcCCcC--------------CHHHHHHHhCc--
Confidence 999999953 3345 78999999998855433 33444333222211 0011 79999998863
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCc-ccccc--chhhccCCCCchhhhhhh
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKI 315 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pDi~t~sK~ 315 (476)
++++|+++.++|++|.+.+.++ +++|.++|++ ||++||+||+|++| +.+.. ...+.++....+.++||.
T Consensus 172 -~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGTVYSEET-IKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 5778888766777888876555 9999999999 99999999999988 55532 222333333444589999
Q ss_pred cC-CCCcEEEEEecHHHHH------hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011856 316 IG-GGLPVGAYGGRRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 316 lg-~G~~iG~~~~~~~i~~------~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
++ +|+|+||+++++++++ .+.. .....++++.+++++.++.+.++ .....++++++.+++.+.|+++
T Consensus 250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~- 323 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYDKAELYAAVCG--AGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI- 323 (398)
T ss_dssp SSCTTTCCEEEECCTTSTTHHHHHHHHHH--HHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCCccceeEEEEEcchhhhHHHHHHHHHH--HhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc-
Confidence 99 8999999999887432 2221 01122356677787777665553 4456788999999999999876
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 464 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~ 464 (476)
++....+..|.++++.+... ...++.+.|.++||++.++. ...+|+++.++++++++++
T Consensus 324 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l 386 (398)
T 3ele_A 324 ---GYHCFKPDGAFYMFVKALED--------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSM 386 (398)
T ss_dssp ---TCCEECCSBSSEEEEECSSS--------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred ---CCeecCCCeeEEEEEEcCCC--------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHHH
Confidence 22222233455577766321 12567788899999998864 3568898889999999999
Q ss_pred HHHHHHHHHh
Q 011856 465 TAAEKVKMRF 474 (476)
Q Consensus 465 ~~l~~~~~~~ 474 (476)
++|+++++++
T Consensus 387 ~~l~~~l~~~ 396 (398)
T 3ele_A 387 PAFEKIYKKY 396 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 71
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=4.2e-30 Score=253.84 Aligned_cols=320 Identities=12% Similarity=0.047 Sum_probs=221.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
++++|||.+|. ++++ .+|++.+++.++++.. .+++.....++.++++++++ ..+++++++||++|++.+++..
T Consensus 31 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~- 104 (363)
T 3ffh_A 31 LTKITKLSSNE--NPLG-TSKKVAAIQANSSVET--EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL- 104 (363)
T ss_dssp CSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCC--CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEccCCC--CCCC-CCHHHHHHHHHHHHHh--hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-
Confidence 35789999884 4555 6899999998876542 34455556788888888776 5689999999999999999953
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
..++++|++.+++|+++...+ ...|..+...+...... -|+++|++.+++ ++++|++++++
T Consensus 105 -~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~~~v~~~~p~ 165 (363)
T 3ffh_A 105 -LDTTTNTVMATPTFVQYRQNA-LIEGAEVREIPLLQDGE--------------HDLEGMLNAIDE---KTTIVWICNPN 165 (363)
T ss_dssp -CSTTCEEEEEESSCHHHHHHH-HHHTCEEEEEECCTTSC--------------CCHHHHHHHCCT---TEEEEEEESSC
T ss_pred -ccCCCEEEEcCCChHHHHHHH-HHcCCEEEEecCCCCCC--------------cCHHHHHHhccc---CCCEEEEeCCC
Confidence 346778999999998854433 33344332221111111 189999999863 67888888778
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCc----hhhhhhhcC-CCCcEEEEEecHH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pD----i~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+++|.+.+.++ +.+|.++|++ |+++|+||+|++| + +...........+| +.++||.++ +|+|+|+++++++
T Consensus 166 nptG~~~~~~~-l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 242 (363)
T 3ffh_A 166 NPTGNYIELAD-IQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242 (363)
T ss_dssp TTTCCCCCHHH-HHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHH
T ss_pred CCcCCCcCHHH-HHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHH
Confidence 88898887333 5555555554 9999999999988 6 43322222222233 447999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. .+ ....++.|.++++.+.
T Consensus 243 ~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g-~~~~~~~~~~~~~~~~ 313 (363)
T 3ffh_A 243 IIRQLNIV-----RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF---EK-VKLYPANGNFVLIDLG 313 (363)
T ss_dssp HHHHHHHT-----CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC---TT-CEECCCCSSEEEEECS
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC---CC-ceECCCCCeEEEEECC
Confidence 99988742 13678899999999999873211 334445555555555555541 22 2334667888877764
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
. ...++.+.|.++||++.++. ...+|+++. +++|+++++++|+++
T Consensus 314 ~---------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 314 I---------------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp S---------------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence 2 12578889999999999864 346788876 999999999999876
No 72
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.97 E-value=5.3e-31 Score=263.62 Aligned_cols=338 Identities=14% Similarity=0.120 Sum_probs=224.9
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al 172 (476)
++++|||.++.. ++.|+.++.+.+++.+++++. ..|+ +.....++.+.++++++ +.++|++++||++|++.++
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVALQYS-PTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG 108 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHTSCC-CTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhhhCCC-CCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHH
Confidence 456789887764 455788999999999988752 2232 22223455555555553 4679999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE-E
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI-I 251 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v-i 251 (476)
+.. ..++++|++.+++||+....+. ..|..+...+... .+ .|+++|++.+++. ++++| +
T Consensus 109 ~~~--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~-~~--------------~d~~~l~~~l~~~--~~~~v~~ 168 (397)
T 2zyj_A 109 KVF--LDEGSPVLLEAPSYMGAIQAFR-LQGPRFLTVPAGE-EG--------------PDLDALEEVLKRE--RPRFLYL 168 (397)
T ss_dssp HHH--CCTTCEEEEEESCCHHHHHHHH-TTCCEEEEEEEET-TE--------------ECHHHHHHHHHHC--CCSCEEE
T ss_pred HHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEEEecCcCC-CC--------------CCHHHHHHHHhhc--CCeEEEE
Confidence 953 2345789999999998654432 2333222111000 00 2899999999753 45666 4
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCC------CchhhhhhhcCCCCcEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVT------PDLTTLGKIIGGGLPVG 323 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~------pDi~t~sK~lg~G~~iG 323 (476)
++..++++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. .....++.. ..+.++||.+++|+|+|
T Consensus 169 ~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G 247 (397)
T 2zyj_A 169 IPSFQNPTGGLTP-LPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVA 247 (397)
T ss_dssp CCBSCTTTCCBCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCE
T ss_pred CCCCcCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeE
Confidence 4555666787764 566999999999999999999999988 55532 222222222 22458999999889999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
|+++++++++.+.. .....+++.|+++++++.++|+... + ++..++++++.+++.+.|++.... ++....+..
T Consensus 248 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-g~~~~~~~~ 323 (397)
T 2zyj_A 248 FAVAHPEALQKLVQ---AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPK-EVRYTRPKG 323 (397)
T ss_dssp EEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCT-TSEECCCSB
T ss_pred EEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CeEEccCCc
Confidence 99999999888762 2233456678999998888876321 0 233344445555555555543110 222222455
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCC-cHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITAAEKVK 471 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~-t~e~i~~~~~~l~~~~ 471 (476)
|.++++.+.... ...++.+.|+++||++.++. ...+|+++.. +++++++++++|++++
T Consensus 324 g~~~~~~~~~~~-------------~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 390 (397)
T 2zyj_A 324 GMFVWMELPKGL-------------SAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRAL 390 (397)
T ss_dssp SSEEEEECSTTC-------------CHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCC-------------CHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 778888774210 12578889999999998752 2457887665 7999999999999998
Q ss_pred HHhh
Q 011856 472 MRFL 475 (476)
Q Consensus 472 ~~~~ 475 (476)
+++.
T Consensus 391 ~~~~ 394 (397)
T 2zyj_A 391 KGLL 394 (397)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 73
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=4.4e-30 Score=259.47 Aligned_cols=344 Identities=13% Similarity=0.025 Sum_probs=231.7
Q ss_pred EcCCCEEEecccChhhcc--CCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC------CCCeEEEeCCHH
Q 011856 95 DIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP------SIEMVRFVNSGT 165 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~--lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~------~~e~v~~~~sGs 165 (476)
+.+|+.+|||..|.. .. -...+|.|.+|+.+++++....+| +.....++.+.+++++. ..++|++++||+
T Consensus 50 ~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t 128 (427)
T 3dyd_A 50 PNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCS 128 (427)
T ss_dssp CCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHH
T ss_pred ccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcH
Confidence 356889999998852 22 224789999999999987433233 33333445555555443 468999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+|++.+++.. ..+++.|++.+++|+++... +...|..+...++....+ .. -|+++|++.+++
T Consensus 129 ~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~---------~~---~d~~~l~~~l~~--- 190 (427)
T 3dyd_A 129 QAIDLCLAVL--ANPGQNILVPRPGFSLYKTL-AESMGIEVKLYNLLPEKS---------WE---IDLKQLEYLIDE--- 190 (427)
T ss_dssp HHHHHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGGT---------TE---ECHHHHHSSCCT---
T ss_pred HHHHHHHHHh--cCCCCEEEEcCCCchhHHHH-HHHcCCEEEEEecccccC---------CC---CCHHHHHHHhcc---
Confidence 9999999964 34677899999999885443 333343222111100000 00 178999888864
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCCchh---hhhhhcC-CC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GG 319 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pDi~---t~sK~lg-~G 319 (476)
++++|+++..+|++|.+.+ ++++++|.++|++||+++|+||+|.+| +.+.. .....++..++++ ++||.++ +|
T Consensus 191 ~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G 269 (427)
T 3dyd_A 191 KTACLIVNNPSNPCGSVFS-KRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG 269 (427)
T ss_dssp TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG
T ss_pred CCCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC
Confidence 4666666655777887664 556999999999999999999999998 66543 2334455555555 8999987 68
Q ss_pred CcEEEEEec-------HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 320 LPVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 320 ~~iG~~~~~-------~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
+|+||++++ +++++.+.. . ...+++.++++++++.++|+.... ++..++++++.+++.+.|++
T Consensus 270 ~riG~~~~~~~~~~~~~~i~~~l~~---~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 342 (427)
T 3dyd_A 270 WRLGWILIHDRRDIFGNEIRDGLVK---L-SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA--- 342 (427)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHH---H-HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cceEEEEecCcchhhHHHHHHHHHH---H-HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 999999887 467776652 1 223578899999999999985322 34455566666666666654
Q ss_pred hcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHH
Q 011856 390 KAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 390 ~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~ 463 (476)
++....+ +..|.++++.+..... ++.....++.+.|+ ++||++.++. ...+|+++.+++++++++
T Consensus 343 -~~g~~~~~p~~g~~~~~~l~~~~~--------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~ 413 (427)
T 3dyd_A 343 -IPGLRPVRPSGAMYLMVGIEMEHF--------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEA 413 (427)
T ss_dssp -STTEEEECCSBTTEEEEEECGGGC--------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHH
T ss_pred -CCCceecCCCeeEEEEEecCHhhc--------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHH
Confidence 3322223 4556677777742110 11111246777775 7899998863 346799988999999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|++++++.
T Consensus 414 l~~l~~~l~~~ 424 (427)
T 3dyd_A 414 CSRIQEFCEQH 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 74
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=4e-30 Score=255.78 Aligned_cols=328 Identities=18% Similarity=0.148 Sum_probs=228.7
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
++||.++. ..++ .++.+.+++.+++++...|+ ......++.+.++++++ +++++++++||++|++.+++.+ ..
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~~ 100 (381)
T 1v2d_A 27 AVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYA-PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--VG 100 (381)
T ss_dssp CEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCC-CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CC
T ss_pred eEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--CC
Confidence 68888775 3455 68999999999887622222 12234567777777765 5678999999999999999964 45
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++++|++.+++||++.. .+...|..+...+..... +.. ..|+++|++.++. ++++|+++++++++
T Consensus 101 ~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~--------~~~---~~d~~~l~~~l~~---~~~~v~~~~~~npt 165 (381)
T 1v2d_A 101 PGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGF---RLDLSALEKALTP---RTRALLLNTPMNPT 165 (381)
T ss_dssp TTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEE---ECCHHHHHTTCCT---TEEEEEEESSCTTT
T ss_pred CCCEEEEcCCCchhHHH-HHHHcCCEEEEEeCCCCC--------ccC---CcCHHHHHHhcCc---CCEEEEECCCCCCC
Confidence 66889999999998654 333444432221110000 000 1279999988853 57888888777788
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc--chhh-ccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhh
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG--GAQE-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 335 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~--~~~~-~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l 335 (476)
|.+.+ .+++++|.++|++||++||+||+|+++..|.. .... ..+..+++.++||.++ +|+|+||+++++++++.+
T Consensus 166 G~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 244 (381)
T 1v2d_A 166 GLVFG-ERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRL 244 (381)
T ss_dssp CCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHH
Confidence 88765 56699999999999999999999998822321 1111 2455566678999998 799999999999998877
Q ss_pred cCCCCccccCCCCCcHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC
Q 011856 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (476)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (476)
.. .....+++.++++++++.++|+.. .+ ++..++++++.+++.+.|++. ++....+..|.++++.+...
T Consensus 245 ~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~ 317 (381)
T 1v2d_A 245 AG---MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFLMAELPGW 317 (381)
T ss_dssp HH---HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEEEEECTTC
T ss_pred HH---HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEEEEecChH
Confidence 62 223446788999999999999865 33 456667777777777777763 33222233466677665321
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ +.+.+.++||++.++. ...+|+++..+++++++++++|++++++.
T Consensus 318 ----------------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 318 ----------------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSP 371 (381)
T ss_dssp ----------------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC---
T ss_pred ----------------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 1 4566789999998752 34678888779999999999999987653
No 75
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=3.7e-30 Score=256.65 Aligned_cols=334 Identities=14% Similarity=0.104 Sum_probs=230.2
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCe-EEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~-v~~~~sGseA~~~a 171 (476)
.++||..+. ..++ .+|++.+++.++++++. .|+. ..+++.++++++.+.++ ..++ +++++||++|++.+
T Consensus 27 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 27 DVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 568888775 3455 68999999999997642 2321 34677777777766543 4678 99999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..+++.|++.+++||+.... +...|..+...+.....+. .-|+++|++.+++ ++++|+
T Consensus 104 ~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~v~ 165 (389)
T 1gd9_A 104 LSAF--LKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDEF------------RLNVDELKKYVTD---KTRALI 165 (389)
T ss_dssp HTTT--CCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGTT------------CCCHHHHHHHCCT---TEEEEE
T ss_pred HHHh--CCCCCEEEEcCCCchhHHHH-HHHCCCEEEEeccCCccCC------------CCCHHHHHHhcCc---CceEEE
Confidence 9842 33467899999999996543 3344443322211100000 0179999999864 577777
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhcc-CC-CCc--hhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-GV-TPD--LTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~-g~-~pD--i~t~sK~lg-~G~~iG~ 324 (476)
++++++++|.+.+ ++.+++|.++|++||++||+||+|+++ +.+. ......+ +. ..| +.++||.++ +|+|+||
T Consensus 166 ~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 244 (389)
T 1gd9_A 166 INSPCNPTGAVLT-KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGF 244 (389)
T ss_dssp EESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEE
T ss_pred EECCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEE
Confidence 7777777887764 556999999999999999999999988 5543 2222222 21 234 347999998 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (476)
+++++++++.+.. .....+++.+++++.++.++|+.... ++..++++++.+++.+.|+++ ++....+..
T Consensus 245 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 317 (389)
T 1gd9_A 245 VAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVKPKG 317 (389)
T ss_dssp EECCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCCCB
T ss_pred EEECHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCe
Confidence 9999999888763 23445678899999998888864322 334555666666666666654 222212233
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
|.++++.+.... ....++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 318 ~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 318 AFYIFPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp TTEECCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeccCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 555665553200 01256788888 8999998763 3468998888999999999999999876
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 386 ~ 386 (389)
T 1gd9_A 386 R 386 (389)
T ss_dssp T
T ss_pred c
Confidence 4
No 76
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=2.2e-30 Score=258.52 Aligned_cols=332 Identities=15% Similarity=0.144 Sum_probs=232.4
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~ 169 (476)
.|++++||.++. ..+++ +|.+.+++.+++++.. .|+. ..+++.++++++.+.++ ..+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 467889998885 34564 7999999999987642 2321 34667777777765433 4679999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
.+++.. ..+++.|++.+++|+++...+ ...|..+...+.....+. .-|+++|++.+++ ++++
T Consensus 116 ~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~ 177 (389)
T 1o4s_A 116 NAFMAL--LDPGDEVIVFSPVWVSYIPQI-ILAGGTVNVVETFMSKNF------------QPSLEEVEGLLVG---KTKA 177 (389)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECCGGGTT------------CCCHHHHHHTCCT---TEEE
T ss_pred HHHHHh--CCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEecCCccCC------------CCCHHHHHHhccc---CceE
Confidence 999953 345678999999999865433 334443322111100000 0178999998864 5777
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccC--CCCc--hhhhhhhcC-CCCcEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPD--LTTLGKIIG-GGLPVG 323 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g--~~pD--i~t~sK~lg-~G~~iG 323 (476)
|+++++++++|.+.+ ++++++|.++|++||++||+||+|+++ ..+.......+. ...| +.++||.++ +|+|+|
T Consensus 178 v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 256 (389)
T 1o4s_A 178 VLINSPNNPTGVVYR-REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 256 (389)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceE
Confidence 877777777887764 566999999999999999999999988 544222222221 1224 447999998 799999
Q ss_pred EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeecee
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (476)
|+++++++++.+.. .....+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ ...+. .+..|.+
T Consensus 257 ~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~ 328 (389)
T 1o4s_A 257 YLISSEKVATAVSK---IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAFY 328 (389)
T ss_dssp EEECCHHHHHHHHH---HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSSE
T ss_pred EEEeCHHHHHHHHH---HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcceE
Confidence 99999999888762 334456788999998888877532 2556777888888888888775 22221 1233556
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+++.+. . + ..++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 329 ~~~~~~-~-----------~---~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 329 LFFKVR-G-----------D---DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEEECS-S-----------C---HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEeCC-C-----------C---HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 666653 0 1 256788887 8899998763 2467888888999999999999988753
No 77
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=1.5e-29 Score=254.96 Aligned_cols=355 Identities=14% Similarity=0.089 Sum_probs=234.0
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~~---~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA~~ 169 (476)
.+|||..|. ..++ .+|.+.+++.+++.++. .|+. ..+++.++++++.+.++ .+ ++|++++||++|++
T Consensus 29 ~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 29 DVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp CCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred CceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 568888874 2333 68999999999998642 3322 24677888888876553 23 68999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC---CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
.+++.. ..+++.|++.+++||++... +...|..+...+... ..|.... ..... -|+++|++.+++ +
T Consensus 106 ~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~G~~~~--~~~~~---~d~~~l~~~~~~---~ 174 (422)
T 3fvs_A 106 TAFQAL--VDEGDEVIIIEPFFDCYEPM-TMMAGGRPVFVSLKPGPIQNGELGS--SSNWQ---LDPMELAGKFTS---R 174 (422)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECBCCCCCSSSCCB--GGGSB---CCHHHHHTTCCT---T
T ss_pred HHHHHH--cCCCCEEEEcCCCchhhHHH-HHHcCCEEEEEeccccccccccccc--ccCCC---CCHHHHHhhcCC---C
Confidence 999953 45667899999999995543 334444333222211 0110000 00000 178999988863 6
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhcc----CCCCchhhhhhhcC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----g~~pDi~t~sK~lg-~G 319 (476)
+++|++++++|++|.+. +++.+++|.++|++||++||+||+|++| +.+.. .....+ +....+.++||.++ +|
T Consensus 175 ~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 253 (422)
T 3fvs_A 175 TKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG 253 (422)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG
T ss_pred ceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc
Confidence 78888887788888887 4555999999999999999999999988 65532 122222 22233458999999 79
Q ss_pred CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 320 ~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
+|+||+++++++++.+. ......+++.++++++++.++|+. ...+++.+++++..+..++.|.+...++++.
T Consensus 254 ~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 330 (422)
T 3fvs_A 254 WKVGWVLGPDHIMKHLR---TVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLK 330 (422)
T ss_dssp GCCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ceEEEEEeCHHHHHHHH---HHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999988876 233456788899999999999975 1123444444444444444444444444554
Q ss_pred eEeeeeceeEEEEEecCCCcCchhh-cccchHHHHHHHHHHH-HCCeEeccCC-----------CcceEEeCCCcHHHHH
Q 011856 395 ICGGYISGMFGFFFTEGPVYNFEDA-KKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~ 461 (476)
...+..|.++++.+...... .... ...+.....++...++ ++||++.++. ...+|+++.+++++|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~ 409 (422)
T 3fvs_A 331 PIIPQGSYFLITDISDFKRK-MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQ 409 (422)
T ss_dssp EEBCSBSSEEEEECHHHHHH-CCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHH
T ss_pred ecCCCeeeEEEEechhhccc-ccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHH
Confidence 44556777778776431000 0000 0000001246666655 5799998753 2457899999999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|++++++
T Consensus 410 ~~l~~l~~~l~~ 421 (422)
T 3fvs_A 410 AMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
No 78
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=4.3e-31 Score=264.03 Aligned_cols=333 Identities=15% Similarity=0.086 Sum_probs=212.9
Q ss_pred EEEcCCCEEEecccChhhccCC--CCcHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEE--
Q 011856 93 MWDIDGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAVP---SIEMVRF-- 160 (476)
Q Consensus 93 ~~d~dG~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~l~~~~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~-- 160 (476)
..+..|+++|||..|...++.+ +.+|.+.+++.+++++...++| + .++++++++++..... +.++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 99 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQ 99 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEe
Confidence 3344567899999996545555 4679999999998875322222 2 3445555555533221 2688998
Q ss_pred eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---C----CH
Q 011856 161 VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---N----DV 233 (476)
Q Consensus 161 ~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----d~ 233 (476)
++||++|++.++++++.+.+++.|++.+++||++...+. ..|..+ +.+|. + |+
T Consensus 100 ~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~-------------------~~~~~~~~~~~~~d~ 159 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-SAGLEV-------------------REYAYYDAENHTLDF 159 (396)
T ss_dssp ESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-HTTCEE-------------------EEEECEETTTTEECH
T ss_pred cccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-HcCCce-------------------EEEecccCCCCCcCH
Confidence 999999999999876555677899999999999654443 233322 22222 1 79
Q ss_pred HHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchhhccCCCCc--
Q 011856 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFGVTPD-- 308 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~g~~pD-- 308 (476)
++|++.+++++++++++++...++++|.+.+ .+++++|.++|++||++||+||+|++| +.+ .......+...+|
T Consensus 160 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2q7w_A 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPT-LEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL 238 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcE
Confidence 9999999764334666776666667777654 566999999999999999999999988 543 2222222221122
Q ss_pred --hhhhhhhcC-CCCcEEEEEe---cHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHH
Q 011856 309 --LTTLGKIIG-GGLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTY 370 (476)
Q Consensus 309 --i~t~sK~lg-~G~~iG~~~~---~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~ 370 (476)
+.++||.++ +|+|+||+++ +++ +++.+.. .....+.+.|+++++++.++|+.. .+ ++..
T Consensus 239 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~ 315 (396)
T 2q7w_A 239 IVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR 315 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred EEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 337999999 7999999986 563 4444431 111222344899999988887532 11 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceE
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~ 450 (476)
++++++.+++.+.|+++.....+....+..|.++++.+. . ..+...+.++||++.++ +|
T Consensus 316 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~l~~~gv~v~~~----~R 374 (396)
T 2q7w_A 316 QRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT--------------K---EQVLRLREEFGVYAVAS----GR 374 (396)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC--------------H---HHHHHHHHHHCEECCTT----CE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC--------------H---HHHHHHHHhcCeeecCC----ce
Confidence 566677777777776653110122112233555444331 1 24556667889999874 57
Q ss_pred EeCCC-cHHHHHHHHHHHHHH
Q 011856 451 TSLAH-SSDDIQHTITAAEKV 470 (476)
Q Consensus 451 ~~~~~-t~e~i~~~~~~l~~~ 470 (476)
+++.. +++++++++++|+++
T Consensus 375 is~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 375 VNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp EEGGGCCTTTHHHHHHHHHHH
T ss_pred EEEeecCHHHHHHHHHHHHhc
Confidence 76654 999999999999876
No 79
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=9.4e-31 Score=262.48 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=229.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~---~~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA 167 (476)
.|+++|||.++. +.+| .+|.+.+++.+++++. ..|. ...+++.++++++.+.++ ++ ++|++++||++|
T Consensus 45 ~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 478899999886 3566 6899999999987542 1222 234566777777765544 23 799999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.+++.. ..+++.|++.+++||++...+ ...|..+...+... .++ ..|+++|++.++. ++
T Consensus 122 l~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~ 182 (404)
T 2o1b_A 122 LVAVPTCV--INPGDYVLLPDPGYTDYLAGV-LLADGKPVPLNLEP-PHY------------LPDWSKVDSQIID---KT 182 (404)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCSSHHHHH-HHTTCEEEEEECCT-TTC------------CCCGGGSCHHHHH---HE
T ss_pred HHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHCCCEEEEeccCc-ccC------------cCCHHHHHHhhcc---Cc
Confidence 99999953 234578999999999966544 33444333222111 111 0267888888863 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhc---cCCCCchhhhhhhcC-CCCc
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY---FGVTPDLTTLGKIIG-GGLP 321 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~---~g~~pDi~t~sK~lg-~G~~ 321 (476)
++|+++..++++|.+. +.+++++|.++|++||++||+||+|++| +.+... .... .+....+.++||.++ +|+|
T Consensus 183 ~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (404)
T 2o1b_A 183 KLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFR 261 (404)
T ss_dssp EEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGC
T ss_pred eEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhh
Confidence 7887776666788776 4666999999999999999999999988 544211 1111 122233458999998 7999
Q ss_pred EEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee
Q 011856 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (476)
Q Consensus 322 iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (476)
+||+++++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|++. ++......
T Consensus 262 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 334 (404)
T 2o1b_A 262 VGFAVGNKDMIQALKK---YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----DLPFVHAK 334 (404)
T ss_dssp CEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCC
T ss_pred eEeEecCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCeecCCC
Confidence 9999999999988762 23344678899999999999876321 344555666666666666653 33222223
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.|.++++.+... . ...++.+.|+ ++||++.++. ...+|+++..+++++++++++|+++++
T Consensus 335 ~g~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 335 GGIYVWLETPPG-Y------------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp BSSEEEEECCTT-C------------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred cceEEEEeCCCC-C------------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 355677777421 0 1246777877 5799998763 346788888899999999999998876
Q ss_pred H
Q 011856 473 R 473 (476)
Q Consensus 473 ~ 473 (476)
+
T Consensus 402 ~ 402 (404)
T 2o1b_A 402 L 402 (404)
T ss_dssp G
T ss_pred h
Confidence 4
No 80
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=4.7e-30 Score=259.12 Aligned_cols=341 Identities=13% Similarity=0.166 Sum_probs=234.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC----CCCeEEEeCCHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP----SIEMVRFVNSGTE 166 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~---~~~~~~~la~~l~~~~~----~~e~v~~~~sGse 166 (476)
++++|||.++.. ++.|+.++.+.+++.+++++. ..|+. ..+++.++++++.+.++ +.++|++++||++
T Consensus 42 ~~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 457899998864 456889999999999998752 23322 34677778887766532 4579999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--- 243 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 243 (476)
|++.+++.. ..+++.|++.+++||++...+. ..|..+...+... .+ .|+++|++.+++.
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 121 ALDLIGKLF--LDDESYCVLDDPAYLGAINAFR-QYLANFVVVPLED-DG--------------MDLNVLERKLSEFDKN 182 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-TTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEEEEeccCC-CC--------------CCHHHHHHHHHhhhhc
Confidence 999999953 2345789999999998654432 2333222111100 00 2899999998741
Q ss_pred --CCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccCCCC---chhhhhhh
Q 011856 244 --KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTP---DLTTLGKI 315 (476)
Q Consensus 244 --~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~p---Di~t~sK~ 315 (476)
+.++++|+ +...++++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. .....++..+ .+.++||.
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~ 261 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTTS-LEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV 261 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTT
T ss_pred ccCCCceEEEECCCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccc
Confidence 12577774 4555566787754 566999999999999999999999988 54432 2222222222 24489999
Q ss_pred cCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 316 lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. ++ ++..++++++.+++.+.|++....+
T Consensus 262 ~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 338 (425)
T 1vp4_A 262 LAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDI 338 (425)
T ss_dssp TCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cccccceEEEeeCHHHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9989999999999999888762 223345667999999999999864 11 3455666677777777777652211
Q ss_pred -CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------CcceEEeCCC-cHHHHH
Q 011856 392 -GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 461 (476)
Q Consensus 392 -~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~~~~~~~~-t~e~i~ 461 (476)
++....+..|.++++.+.... + ..++.+.|+++||++.++. ...+|+++.. ++++++
T Consensus 339 ~g~~~~~~~~g~~~~~~~~~~~----------~---~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~ 405 (425)
T 1vp4_A 339 PGVKWVKSEGGLFIWLTLPEGF----------D---TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV 405 (425)
T ss_dssp TTCEECCCSBSSEEEEECCTTC----------C---TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHH
T ss_pred CceEEecCCccEEEEEEcCCCC----------C---HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHH
Confidence 122222455778888874310 0 1356788888899998752 2457887665 799999
Q ss_pred HHHHHHHHHHHHh
Q 011856 462 HTITAAEKVKMRF 474 (476)
Q Consensus 462 ~~~~~l~~~~~~~ 474 (476)
+++++|+++++++
T Consensus 406 ~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 406 EGIKRLREVVLEY 418 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 81
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=1.6e-29 Score=251.94 Aligned_cols=329 Identities=15% Similarity=0.111 Sum_probs=225.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~a 171 (476)
.+|||..+. ..++ .+|.+.+++.++++++ ..|.. ..+++.++++++.+.++ +.+ ++++++||++|++.+
T Consensus 31 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 367887774 3455 6899999999998763 22322 34667777777766443 467 999999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
++.. ..++++|++.+++||++.. .+...|..+...+...... ..|+++|++.++ +++++|+
T Consensus 108 ~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~---~~~~~v~ 168 (386)
T 1u08_A 108 ITAL--VRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHF-------------RVDWQEFAALLS---ERTRLVI 168 (386)
T ss_dssp HHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTC-------------CCCHHHHHHHCC---TTEEEEE
T ss_pred HHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEeecCcccC-------------cCCHHHHHHhhc---ccCEEEE
Confidence 9953 3456789999999998554 3334444332221110000 128999999885 2678888
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc----chhh-ccCCCCchhhhhhhcC-CCCcEEE
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQE-YFGVTPDLTTLGKIIG-GGLPVGA 324 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~-~~g~~pDi~t~sK~lg-~G~~iG~ 324 (476)
++++++++|.+.+ .+++++|.++|++||++||+||+|++| +.|.. .... ..+....+.++||.++ +|+|+||
T Consensus 169 l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSATVWQ-QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCCCCC-HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 8777777887765 556999999999999999999999988 54421 1111 2344445668999999 7999999
Q ss_pred EEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece
Q 011856 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (476)
+++++++++.+.. .....+++.++++++++.++|+..++ ++..++++++.+++.+.|++ .++....+..|.
T Consensus 248 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~ 320 (386)
T 1u08_A 248 CVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE----SRLEILPCEGTY 320 (386)
T ss_dssp EECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS----SSCEECCCCBSS
T ss_pred EEcCHHHHHHHHH---HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCCceE
Confidence 9999999888762 23345678889999999888875421 34455555555555555543 343322233466
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC--------CcceEEeCCCcHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~--------~~~~~~~~~~t~e~i~~~~~~l~~ 469 (476)
++++.+..... ....++.+.|+ ++||++.++. ...+|+++..++++|++++++|++
T Consensus 321 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVST-----------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTCC-----------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEecCCCCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 77877642100 01246777776 6899998752 245788888899999999999864
No 82
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=7.3e-30 Score=258.55 Aligned_cols=345 Identities=10% Similarity=0.012 Sum_probs=236.8
Q ss_pred ecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCC---CCHHHHHHHHHHHhhCC---CCCeEE
Q 011856 88 VKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGA---PCLLENVLAEMVISAVP---SIEMVR 159 (476)
Q Consensus 88 ~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~---~~~~~~~la~~l~~~~~---~~e~v~ 159 (476)
.....++|.+|+++|||.++. +.++ .+|++.+++.+++.+.. .|.. ..+++.++++++.+.++ ..++++
T Consensus 33 ~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 33 ALVTNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHHHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 444556677899999999986 3444 78999999999998532 2322 23667777777765432 468999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCc--eEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~--~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
+++||++|++.+++....+.+++ +|++.+++|+++...+. ..|..+...+.. ..+. .-|+++|+
T Consensus 110 ~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~-~~~~------------~~d~~~l~ 175 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-ILGQKFESFDLF-EYRG------------EKLREKLE 175 (437)
T ss_dssp EESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-HHTCCCEEEEGG-GGCT------------THHHHHHH
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-HcCCEEEEEeec-CCCC------------ccCHHHHH
Confidence 99999999999999542114556 79999999998654443 334332221110 0000 01789999
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc---------hhhc-cCCC
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG---------AQEY-FGVT 306 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~---------~~~~-~g~~ 306 (476)
+.+++. ++++|+++.+++++|.+.+.++ +++|.++|++||++||+||+|+++ ..+... .... .+..
T Consensus 176 ~~l~~~--~~~~v~l~~p~nptG~~~~~~~-l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T 3g0t_A 176 SYLQTG--QFCSIIYSNPNNPTWQCMTDEE-LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNY 252 (437)
T ss_dssp HHHTTT--CCCEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCE
T ss_pred HHHhcC--CceEEEEeCCCCCCCCcCCHHH-HHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcE
Confidence 999432 4555655444677888776555 999999999999999999999887 432211 1111 2222
Q ss_pred CchhhhhhhcC-CCCcEEEEEecHHHHH-h-----------------hcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-
Q 011856 307 PDLTTLGKIIG-GGLPVGAYGGRRDIME-M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE- 366 (476)
Q Consensus 307 pDi~t~sK~lg-~G~~iG~~~~~~~i~~-~-----------------l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 366 (476)
..+.++||.++ +|+|+||+++++++++ . +. ......+++.++++++++.++|+....
T Consensus 253 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (437)
T 3g0t_A 253 ILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSS---SALYALSSGATHSAQWGMAAMLKACNDG 329 (437)
T ss_dssp EEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHT---THHHHHHSSSCHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHH---HHHhhhcCCCCHHHHHHHHHHHhCcHhH
Confidence 23447999999 8999999999999998 7 65 233444678899999999999987642
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHhhhcCCceE------ee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 367 ----PGTYEYLNKITGELTQGIIDAGKKAGHAIC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 367 ----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
++..++++++.+++.+.|+++ ++... .+ ..|.++++.+... ...++.+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~ 391 (437)
T 3g0t_A 330 EYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKGM--------------DSSKLIEKFV 391 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETTC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCCC--------------CHHHHHHHHH
Confidence 344556666666666666554 32222 23 5677777777410 1257888999
Q ss_pred HCCeEeccCCC------cceEEeCCC-cHHHHHHHHHHHHHHHHH
Q 011856 436 EEGVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 436 ~~Gv~~~~~~~------~~~~~~~~~-t~e~i~~~~~~l~~~~~~ 473 (476)
++||++.++.. ..+|+++.. +++++++++++|++++++
T Consensus 392 ~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 392 RYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred HcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999988742 457887655 999999999999998764
No 83
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=4.4e-30 Score=254.84 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=216.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH
Q 011856 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 122 ~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+++.+++..+...+++.....+|.+.+++++. +++++++++||++|++.+++.. ..+++.|++.+++|++.... +
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHH-H
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHH-H
Confidence 45556665543333344445678888888762 6789999999999999999953 34567899999999885443 3
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...|..+...+.....+. . -|+++|++.++. ++++|+++++++++|.+.+ ++++++|.++|++|
T Consensus 123 ~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~-~~~l~~i~~la~~~ 186 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGW---------L---PDLEKLRQLIRP---TTKMICINNANNPTGAVMD-RTYLEELVEIASEV 186 (375)
T ss_dssp HHTTCEEEEEEEEGGGTT---------E---ECHHHHHHHCCT---TCCEEEEESSCTTTCCCCC-HHHHHHHHHHHHTT
T ss_pred HHcCCEEEEEeccccCCC---------C---CCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCC-HHHHHHHHHHHHHc
Confidence 333432221111000000 0 189999999863 6778888888888888765 55599999999999
Q ss_pred CCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHH
Q 011856 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (476)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa 357 (476)
|++||+||+|+++ +.+.....+.++..+++.++||.++ +|+|+||+++++++++.+.. .....+++.+++.++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 263 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRD---YRDYTMICAGVFDDLVA 263 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTT---TGGGTTSCCCHHHHHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHH---HHhhhccCCCcHHHHHH
Confidence 9999999999988 5433334455666677779999999 79999999999999999873 34556778899999999
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 358 IHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 358 ~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
.++|+..++ ++..++++++.+++.+.|++ ++....+.. .|.+.++.+.... ...++.+.+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l 326 (375)
T 3op7_A 264 QLALAHYQEILERNRHILEENLAILDQWIEE----EPLVSYIRPAVVSTSFVKIAVDM-------------PMEDFCLQL 326 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECCCSSSSCEEEEECCSS-------------CHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhh----CCCceEecCCCeEEEeEEcCCCC-------------CHHHHHHHH
Confidence 988874322 22333334444444444443 433333333 3445555553210 124666776
Q ss_pred -HHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHHHh
Q 011856 435 -LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 435 -~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.++||++.++. ...+|+++..+++++++++++|+++++++
T Consensus 327 l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 327 LQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGGG
T ss_pred HHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 58899998864 35688998888899999999999998765
No 84
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=4.5e-30 Score=253.42 Aligned_cols=321 Identities=15% Similarity=0.105 Sum_probs=222.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al 172 (476)
.+|+.+|||.++. +.++ .+|+|.+++.++++++ ..++|+.....++.++++++++ ..+++++++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 4678899999884 3344 7899999999998874 1233443334677777777765 5789999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ...++.|++.+++|++....+ ...|..+...+.. .+. ++ +++++.. +.+++++
T Consensus 100 ~~l--~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~--~~~--------------~~---~~l~~~~--~~~~v~i 155 (360)
T 3hdo_A 100 RAF--AAEGEEIGYVHPSYSYYGTLA-EVQGARVRTFGLT--GDF--------------RI---AGFPERY--EGKVFFL 155 (360)
T ss_dssp HHH--CCTTCEEEEESSSCTHHHHHH-HHHTCEEEEECBC--TTS--------------SB---TTCCSSB--CSSEEEE
T ss_pred HHH--hCCCCEEEEcCCChHHHHHHH-HHCCCEEEEeeCC--CCC--------------CH---HHHHhhc--CCCEEEE
Confidence 953 344578999999998855433 3334433221111 000 11 2222221 2336666
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHH
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
+.+++++|.+.+ +++|.++|+++|++||+||+|++| +.+.....+..+....+.++||.++ +|+|+||++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 666788899999 888999999999999999999987 4332222233333344558999998 7999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|+++ ++ ...++.|.++++.+.
T Consensus 232 ~~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 232 VIAALDKI-----RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----GY-DVIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHHH-----SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TC-EECCCSSSEEEEECT
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CC-EEcCCCccEEEEECC
Confidence 99888631 23577899999999999874221 345556666666666666654 32 234567778777653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC----cceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.. ...++.+.|.++||++.++.. ..+|+++. +++|+++++++|+++.+
T Consensus 302 ~~--------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 DR--------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TC--------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 21 125778889999999988652 56788876 99999999999998764
No 85
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=2.8e-29 Score=251.99 Aligned_cols=351 Identities=13% Similarity=0.040 Sum_probs=229.9
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~~---~~~~~~~la~~l~~~~~---~~-e~v~~~~sGseA~~ 169 (476)
..+|||..+. ..++ .+|.|.+++.+++.+.. .|+. ..+++.++++++.+.++ .+ ++|++++||++|++
T Consensus 23 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 3568888773 2233 68999999999987532 2322 34677778888776543 34 79999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
.+++.. ..+++.|++..++|+++... +...|..+...+... ..+.. ....... -|+++|++.++. ++
T Consensus 100 ~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~g~~--~~~~~~~---~d~~~l~~~~~~---~~ 168 (410)
T 3e2y_A 100 NSIQGL--VDPGDEVIIMVPFYDCYEPM-VRMAGAVPVFIPLRSKPTDGMK--WTSSDWT---FDPRELESKFSS---KT 168 (410)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEECCCCSSC--CBGGGEE---CCHHHHHTTCCT---TE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhhHHH-HHHcCCEEEEEecccccccccc--ccccCCc---CCHHHHHhhcCC---Cc
Confidence 999953 34567899999999885543 334444332221110 00000 0000011 178999888853 68
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhccC----CCCchhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG----VTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g----~~pDi~t~sK~lg-~G~ 320 (476)
++|+++++++++|.+.+ ++.+++|.++|++||++||+||+|++| +.+.. .....+. ...++.++||.++ +|+
T Consensus 169 ~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 247 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYT-RQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW 247 (410)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGG
T ss_pred eEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCc
Confidence 88888888888888775 445999999999999999999999988 65532 1222222 2233447999999 899
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
|+||+++++++++.+. ......+++.++++++++.++|+. ...++..+++++..+..++.|.+...++++..
T Consensus 248 r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 324 (410)
T 3e2y_A 248 KLGWSIGPAHLIKHLQ---TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKP 324 (410)
T ss_dssp CCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred eEEEEEECHHHHHHHH---HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 9999999999998876 333556788899999999999874 11244444444444444444444444445554
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC-----------CcceEEeCCCcHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (476)
..+..|.++++.+..... .+.. ...+.....++...+ .++||++.++. ...+|+++.+++++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~ 402 (410)
T 3e2y_A 325 IVPDGGYFIIADVSSLGA-DLSD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAA 402 (410)
T ss_dssp EBCSBSSEEEEECGGGCC-CCTT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHH
T ss_pred cCCCccEEEEEEchhhhc-cccc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHH
Confidence 556677788887753210 0000 000011123556655 46799998753 145789999999999999
Q ss_pred HHHHHH
Q 011856 464 ITAAEK 469 (476)
Q Consensus 464 ~~~l~~ 469 (476)
+++|++
T Consensus 403 l~~l~~ 408 (410)
T 3e2y_A 403 EEIFRA 408 (410)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999975
No 86
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.9e-29 Score=253.53 Aligned_cols=334 Identities=16% Similarity=0.131 Sum_probs=229.6
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~-~~~~~---~~~~~~~la~~l~~~~~---~~e-~v~~~~sGseA~~~al 172 (476)
+|||..+. ..++ .+|.+.+++.++++++ ..|.. ..+++.++++++.+.++ ..+ +|++++||++|++.++
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 68888775 3455 6899999999999863 22322 24677777777766543 466 9999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.+ ..+++.|++.+++||+.... +...|..+...+.... . .... .|+++|++.++. ++++|++
T Consensus 104 ~~~--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~~~-~-------~~~~---~d~~~l~~~l~~---~~~~v~l 166 (411)
T 2o0r_A 104 LGL--VEPGSEVLLIEPFYDSYSPV-VAMAGAHRVTVPLVPD-G-------RGFA---LDADALRRAVTP---RTRALII 166 (411)
T ss_dssp HHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEEE-T-------TEEE---CCHHHHHHHCCT---TEEEEEE
T ss_pred HHh--cCCCCEEEEeCCCcHhHHHH-HHHcCCEEEEeecccc-c-------cCCC---CCHHHHHHhhcc---CceEEEE
Confidence 964 34567899999999986443 3344443222111000 0 0000 389999999863 6788888
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccccc-chhhc----cCCCCchhhhhhhcC-CCCcEEEE
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAY 325 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~----~g~~pDi~t~sK~lg-~G~~iG~~ 325 (476)
+++++++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. ..... .+....+.++||.++ +|+|+||+
T Consensus 167 ~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 245 (411)
T 2o0r_A 167 NSPHNPTGAVLS-ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 245 (411)
T ss_dssp ESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE
T ss_pred eCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEE
Confidence 877788887765 566999999999999999999999988 55431 11111 222333458999998 89999999
Q ss_pred EecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeecee
Q 011856 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (476)
Q Consensus 326 ~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (476)
++++++++.+.. .....+++.++++++++.++|+...+ ++..++++++.+++.+.|++. ++....+..|.+
T Consensus 246 ~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~ 318 (411)
T 2o0r_A 246 CGPAELIAGVRA---AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGTYF 318 (411)
T ss_dssp ECCHHHHHHHHH---HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBSSE
T ss_pred eeCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCeeEE
Confidence 999999888762 23344667788888888888875422 445666677777777777664 332222334667
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC-----------------CcceEEeCCCcHHHHHHHHH
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHTIT 465 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-----------------~~~~~~~~~~t~e~i~~~~~ 465 (476)
+++.+.... . ....++.+.|+ ++||++.++. ...+|+++..++++++++++
T Consensus 319 ~~~~~~~~~--~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~ 387 (411)
T 2o0r_A 319 LCADPRPLG--Y---------DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIR 387 (411)
T ss_dssp EEEECGGGT--C---------CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHH
T ss_pred EEEecCCCC--C---------CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHH
Confidence 787774310 0 01246777776 6799997641 23578988889999999999
Q ss_pred HHHHHHHH
Q 011856 466 AAEKVKMR 473 (476)
Q Consensus 466 ~l~~~~~~ 473 (476)
+|++++++
T Consensus 388 ~l~~~~~~ 395 (411)
T 2o0r_A 388 RLSVLAER 395 (411)
T ss_dssp HHGGGGC-
T ss_pred HHHHHHhc
Confidence 99887654
No 87
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=6.1e-30 Score=259.08 Aligned_cols=348 Identities=11% Similarity=0.059 Sum_probs=224.5
Q ss_pred EEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-------------CCC---CCCHHHHHHHHHHHhhCC----
Q 011856 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-------------SFG---APCLLENVLAEMVISAVP---- 153 (476)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-------------~~~---~~~~~~~~la~~l~~~~~---- 153 (476)
||.++|.+.++..+...+.++ ++.+.+++.++..... .|+ +..++++++++++.+...
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 677777766655665545555 7888888877654211 122 124667777777764321
Q ss_pred -CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC
Q 011856 154 -SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (476)
Q Consensus 154 -~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (476)
..+++++++||++|++.+++.. ...++.|++.+++|++....+....|..+...++....++ .-|
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d 174 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGF------------QIT 174 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTS------------CCC
T ss_pred CCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCC------------cCC
Confidence 4789999999999999999953 2345778888888877544332133432222111100000 017
Q ss_pred HHHHHHHHhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhccC---
Q 011856 233 VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFG--- 304 (476)
Q Consensus 233 ~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g--- 304 (476)
+++|++.+++ ...++++|+++++++++|.+.+.+ .+++|.++|++||++||+||+|+++ +.+..+ ....++
T Consensus 175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~ 253 (435)
T 3piu_A 175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRN-ELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDR 253 (435)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccc
Confidence 9999999875 223678888877777888876644 4999999999999999999999887 544322 111111
Q ss_pred -CC-----Cc----hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-----C
Q 011856 305 -VT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----P 367 (476)
Q Consensus 305 -~~-----pD----i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~ 367 (476)
+. +| +.++||++| +|+|+||+++ ++++++.+.. +..++..++++++++.++++.... +
T Consensus 254 ~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (435)
T 3piu_A 254 NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQHLLSAMLSDKKLTKNYIA 328 (435)
T ss_dssp ------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCCCHHHHHHHHHHhcChHHHHHHHH
Confidence 11 34 448999999 8999999998 5677776652 223445678888888877763211 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC-
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ- 445 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~- 445 (476)
+..++++++.+++++.|++ .++.......|.++++.+..... .+......++.+.|+++ ||++.++.
T Consensus 329 ~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~gi~v~~g~~ 397 (435)
T 3piu_A 329 ENHKRLKQRQKKLVSGLQK----SGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEMELWKKIVYEVHLNISPGSS 397 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TTCEECCCCSSSEEEEECGGGSS-------SSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCcccCCCeeEEEEEEcccccc-------cCCchhHHHHHHHHHHHCCEEEeCCcc
Confidence 3344455555555555544 33332223345788888753210 01122345788888877 99998753
Q ss_pred -----CcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 446 -----FEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 -----~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++.. +++++++++++|+++++++
T Consensus 398 ~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 398 CHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp GTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 3457887766 9999999999999998865
No 88
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=8.5e-29 Score=245.14 Aligned_cols=319 Identities=15% Similarity=0.121 Sum_probs=225.6
Q ss_pred EecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCCC--CHHHHHHHHHHHhh--CC-CCCeEEEeCCHHHHHHHHH
Q 011856 102 IDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAP--CLLENVLAEMVISA--VP-SIEMVRFVNSGTEACMGVL 172 (476)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~~--~~~~~~la~~l~~~--~~-~~e~v~~~~sGseA~~~al 172 (476)
|||.++. ++++ .+|++.+++.+++++. ..|..+ .+++.++++++.+. ++ ..++|++++|++++++.++
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 8998885 3466 7899999999998762 222211 23444444444433 44 5689999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
+.. ..+++.|++.+++||++... +...|..+...+.. .+. ..|+++|++.++++ ++++|++
T Consensus 110 ~~l--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~~~--~~~~v~~ 170 (369)
T 3cq5_A 110 QAF--GGPGRTALGFQPSYSMHPIL-AKGTHTEFIAVSRG--ADF------------RIDMDVALEEIRAK--QPDIVFV 170 (369)
T ss_dssp HHH--CSTTCEEEEEESSCTHHHHH-HHHTTCEEEEEECC--TTS------------SCCHHHHHHHHHHH--CCSEEEE
T ss_pred HHh--cCCCCEEEEcCCChHHHHHH-HHHcCCEEEEecCC--cCC------------CCCHHHHHHHhhcc--CCCEEEE
Confidence 853 34567899999999886543 33344433221111 100 12799999998752 4677888
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhccC-CCCchhhhhhhcC-CCCcEEEEEec
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGR 328 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g-~~pDi~t~sK~lg-~G~~iG~~~~~ 328 (476)
+++++++|.+.+ ++++.++|+.++++||+||+|+++ +...... .+.++ ....+.++||.++ +|+|+||++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 888888999988 788889999999999999999888 4322221 12233 3345668999998 79999999999
Q ss_pred HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 329 ~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
+++++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.
T Consensus 247 ~~~~~~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~ 316 (369)
T 3cq5_A 247 PAFIDAVMLV-----RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----GYA-VVPSESNFVFFG 316 (369)
T ss_dssp THHHHHHHTT-----SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----TCE-EECCSSSEEEEE
T ss_pred HHHHHHHHHc-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEEE
Confidence 9999888742 12467899999999999875322 566777778888888887763 322 235667788776
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+.. + ..++.+.|.++||++.+++ ...+|+++. +++|+++++++|+++++
T Consensus 317 ~~~------------~---~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DFS------------D---QHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CCS------------S---HHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CCC------------C---HHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 631 1 2567888899999999874 346788876 89999999999998875
No 89
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=8.7e-30 Score=255.84 Aligned_cols=331 Identities=15% Similarity=0.085 Sum_probs=228.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~ 168 (476)
.+|++++||.++. ..++ .+|.+.+++ ++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3678899998885 2445 578999999 8886542 2322 34677788888776542 458999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCC-HHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~ 247 (476)
+.+++.+ ..+++.|++.+++||++... +...|..+...+.....++ + +++|++.+++ ++
T Consensus 116 ~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~~---~~ 175 (409)
T 2gb3_A 116 LFSFAVI--ANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF--------------AIPQNLESFINE---RT 175 (409)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS--------------CCCTTGGGGCCT---TE
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeccCCCCCC--------------ccHHHHHHhhCc---CC
Confidence 9999963 34567899999999986543 3334443222111100010 1 4566666653 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchh--hhhhhcC-CCCcE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIG-GGLPV 322 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~--t~sK~lg-~G~~i 322 (476)
++|+++++++++|.+.+ .+++++|.++|++||++||+||+|+++ +.+..... ..++ ..|++ ++||.++ +|+|+
T Consensus 176 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~ 253 (409)
T 2gb3_A 176 KGIVLSNPCNPTGVVYG-KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARV 253 (409)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceE
Confidence 88888777777888764 566999999999999999999999988 55432221 1223 23654 7899998 79999
Q ss_pred EEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCce-Eee
Q 011856 323 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 398 (476)
Q Consensus 323 G~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~ 398 (476)
|++++++ ++++.+.. .....+ +.++++++++.++|+...+ +++.++++++.+++.+.|+++ ++.. ..+
T Consensus 254 G~~~~~~~~l~~~l~~---~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 325 (409)
T 2gb3_A 254 GCLITRNEELISHAMK---LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKP 325 (409)
T ss_dssp EEEECSCHHHHHHHHH---HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCC
T ss_pred EEEEECcHHHHHHHHH---HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc----CceeeeCC
Confidence 9999998 89888762 223334 7789999998888853211 345566677777777777664 2222 123
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC------CeEeccCC---------CcceEEeCCCcHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHT 463 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~~~~~~---------~~~~~~~~~~t~e~i~~~ 463 (476)
..|.++++.+... + ..++.+.|+++ ||++.++. ...+|+++.+++++++++
T Consensus 326 ~~~~~~~~~~~~~-----------~---~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~ 391 (409)
T 2gb3_A 326 SGAFYITAELPVE-----------D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRA 391 (409)
T ss_dssp SBSSEEEEECSSS-----------C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHH
T ss_pred CeeEEEEEEeCCC-----------C---HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHH
Confidence 3466666666310 1 25678888887 99998752 346788888999999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|+++++++
T Consensus 392 ~~~l~~~l~~~ 402 (409)
T 2gb3_A 392 IDVLMEGLKMF 402 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 90
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.97 E-value=5.6e-30 Score=257.44 Aligned_cols=342 Identities=13% Similarity=0.033 Sum_probs=219.8
Q ss_pred CCEEEecccChhhccCCC--CcHHHHHHHHHHHHh-cCCCCC-C----CHHHHHHHHHHHhhCC---CCCeEEE--eCCH
Q 011856 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKK-GTSFGA-P----CLLENVLAEMVISAVP---SIEMVRF--VNSG 164 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~-~~~~~~-~----~~~~~~la~~l~~~~~---~~e~v~~--~~sG 164 (476)
|+.++||..|...++.|+ .+|.+.+++.+++.+ ...++| + .++++++++++....+ ..++|++ ++||
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 566789888854334444 458999999988732 122222 3 3444555555533221 3589999 9999
Q ss_pred HHHHHHHHHHHHhccCC-----ceEEEEeCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 165 TEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 165 seA~~~al~~ar~~~~~-----~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
++|++.++++++.+.++ +.|++.+++||++...+ ...|.. +...+.....+. . .|+++|++
T Consensus 109 ~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~~---------~---~d~~~l~~ 175 (412)
T 1ajs_A 109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF-TTAGFKDIRSYRYWDTEKR---------G---LDLQGFLS 175 (412)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHH-HHTTCSCEEEEECEETTTT---------E---ECHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHH-HHcCCceeEEEeeecCCCC---------c---cCHHHHHH
Confidence 99999998865555556 78999999999865443 333433 322111000000 0 17999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc---ccchhhccCCCCc----hh
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----LT 310 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~~~~g~~pD----i~ 310 (476)
.+++++.++.+++++..++++|.+. +.+++++|.++|++||++||+||+|.+| +.+ .......+...+| +.
T Consensus 176 ~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (412)
T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQ 254 (412)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEE
Confidence 9976444566666555566677654 5666999999999999999999999998 654 3323332221233 34
Q ss_pred hhhhhcCC-CCcEEEEEe---cHHHHHhhcCCCCccccCCCC-CcHHHHHHHHHHHHHhc-------C-CCHHHHHHHHH
Q 011856 311 TLGKIIGG-GLPVGAYGG---RRDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK-------E-PGTYEYLNKIT 377 (476)
Q Consensus 311 t~sK~lg~-G~~iG~~~~---~~~i~~~l~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~-------~-~~~~~~~~~~~ 377 (476)
++||.++. |+|+||+++ ++++++.+...-...+..+++ .|+++++++.++|+... . ++..++++++.
T Consensus 255 s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (412)
T 1ajs_A 255 SFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMR 334 (412)
T ss_dssp ECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHH
Confidence 89999996 999999998 887444321100011223444 58999999999887542 1 45667777777
Q ss_pred HHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-Cc
Q 011856 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 456 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t 456 (476)
+++.+.|+++....++....+..|.++++.+. ...+...+.++||++.++ +|+++. .+
T Consensus 335 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris~~~~~ 393 (412)
T 1ajs_A 335 SELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS----GRINMCGLT 393 (412)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT----SEEEGGGCC
T ss_pred HHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC----cEEEeeeCC
Confidence 88887777653100122112233444443321 133445566889999874 588766 49
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|+++++++
T Consensus 394 ~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 394 TKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp TTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998864
No 91
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=3e-29 Score=246.52 Aligned_cols=324 Identities=15% Similarity=0.068 Sum_probs=213.4
Q ss_pred EeecCCEEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCH
Q 011856 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSG 164 (476)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sG 164 (476)
.+++|.+++|.+|+++|||.++. ++++ .+|++.+++.+++..... |+.....++.++++++++ .++++++++||
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~lr~~la~~~~~~~~~i~~t~g~ 76 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRH--YPEPDAGTLRQMLAKRNSVDNNAILVTNGP 76 (350)
T ss_dssp --------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGS--CCCTTCHHHHHHHHHHTTCCGGGEEEESHH
T ss_pred cccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhc--CCCCcHHHHHHHHHHHhCcCHHHEEEcCCH
Confidence 46889999999999999999885 4555 789999999988854332 333333678888888886 56899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcC
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN 243 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~ 243 (476)
++|+..+++. +. ++.|++.+++|++.... +...|.. ++.++. ++.+.+.
T Consensus 77 ~~al~~~~~~---l~-gd~Vi~~~p~~~~~~~~-~~~~g~~-------------------~~~v~~~~~~~~~~------ 126 (350)
T 3fkd_A 77 TAAFYQIAQA---FR-GSRSLIAIPSFAEYEDA-CRMYEHE-------------------VCFYPSNEDIGEAD------ 126 (350)
T ss_dssp HHHHHHHHHH---TT-TCEEEEEESCCHHHHHH-HHHTTCE-------------------EEEEETTSCGGGSC------
T ss_pred HHHHHHHHHH---HC-CCEEEEeCCCcHHHHHH-HHHcCCe-------------------EEEEecCCccccCc------
Confidence 9999999995 34 78899999999885433 3333432 223333 2111110
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCc-cccccch--hhccCCCCchhhhhhhcC-C
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGF-RLAYGGA--QEYFGVTPDLTTLGKIIG-G 318 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~-r~g~~~~--~~~~g~~pDi~t~sK~lg-~ 318 (476)
.+++++|+++..+|++|.+.+ +++|.++++.++ .+||+||+|.+| ..+.... .+..+....+.++||.++ +
T Consensus 127 ~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 202 (350)
T 3fkd_A 127 FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP 202 (350)
T ss_dssp CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG
T ss_pred cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCc
Confidence 025667777777778899888 455555555554 599999999888 5443221 111222223447999999 8
Q ss_pred CCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
|+|+||+++++++++.+.... .+++.++++++++.++|+.... .+..++..++.+++.+.|+++ +.....
T Consensus 203 G~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 273 (350)
T 3fkd_A 203 GLRIGYIVANKDFMKRVAAFS-----TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL----DGVEVH 273 (350)
T ss_dssp GGCCEEEECCHHHHHHHHTTC-----CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS----TTEEEC
T ss_pred chheEeEEeCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEEC
Confidence 999999999999999887422 3567899999999999885542 223333336677777777653 223334
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
++.|.++++.+... ...++.+.|++ +||.+.++. ...+|+++. +++++++++++|+++
T Consensus 274 ~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~ 338 (350)
T 3fkd_A 274 PSGTTFFLLRLKKG--------------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETF 338 (350)
T ss_dssp CCSSSEEEEEESSS--------------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCC--------------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 56777877777431 13578889998 999998864 345788866 888999999999988
Q ss_pred HH
Q 011856 471 KM 472 (476)
Q Consensus 471 ~~ 472 (476)
++
T Consensus 339 ~~ 340 (350)
T 3fkd_A 339 LE 340 (350)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 92
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=2.3e-28 Score=244.76 Aligned_cols=328 Identities=20% Similarity=0.166 Sum_probs=229.2
Q ss_pred CCCEEEecccChhhccCCC-CcHHHHHHHHHHHHh-cCC-----C-CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS-----F-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~-~~~-----~-~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
||++|+||.++ +++|+ .+|++.+++.+++++ +.. . ....+...++++.++++++..+.++ +++|++++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~-~~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALV-FSSAYNAN 119 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEE-ESCHHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEE-ECCcHHHH
Confidence 78999999987 66676 478999999999987 221 1 1245678899999999986444454 47788899
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (476)
..++++.....+++.|++..+.|++ ....+...|. +++.+|++|+++|++++++.. +++
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~-~~~~~~~~g~-------------------~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHAS-MIEGIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHH-HHHHHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHH-HHHHHHHcCC-------------------eEEEEcCCCHHHHHHHHHhhccCCc
Confidence 9888853222244556655544443 3333333222 356667779999999997543 368
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCC--CCch--hhhhhhcCCCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDL--TTLGKIIGGGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pDi--~t~sK~lg~G~ 320 (476)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ |+ +.|..+. ..+++ .+|+ .++||+++.
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~-- 252 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV-- 252 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS--
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC--
Confidence 89999999999999998 9999999999999999999997 43 3443333 44454 2344 389999983
Q ss_pred cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
+.||+++++++++.+......+...+ +.++++++++.++++.+++ ++..++++++.+++.+.|+++ ...+.
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--- 326 (401)
T 2bwn_A 253 FGGYIAASARMVDAVRSYAPGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII--- 326 (401)
T ss_dssp CCEEEEECHHHHHHHHHHCHHHHTSB-CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC---
T ss_pred CCCEEecCHHHHHHHHHhCcCceecC-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc---
Confidence 23899999998887753112222222 3467889999999998865 467888899999999999876 22222
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCC-------cceEEeCC--CcHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAA 467 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~-------~~~~~~~~--~t~e~i~~~~~~l 467 (476)
...+.++++.+.. .....++.+.|+ ++||++.++.. ..+|+++. +|++|+++++++|
T Consensus 327 ~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 327 DHGSHIVPVVIGD-------------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp CCSSSCEEEECCC-------------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCC-------------hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 2345577777631 123457888886 78999987531 25777654 7999999999999
Q ss_pred HHHHHHh
Q 011856 468 EKVKMRF 474 (476)
Q Consensus 468 ~~~~~~~ 474 (476)
+++++++
T Consensus 394 ~~~~~~~ 400 (401)
T 2bwn_A 394 DLLWARC 400 (401)
T ss_dssp HHHC---
T ss_pred HHHHHhc
Confidence 9987653
No 93
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=1e-29 Score=258.51 Aligned_cols=339 Identities=12% Similarity=0.073 Sum_probs=222.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----CCCCC-CCHHHHHHHHHHHhhC----C-CCCeEEEeCCHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA-PCLLENVLAEMVISAV----P-SIEMVRFVNSGT 165 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~~~~~-~~~~~~~la~~l~~~~----~-~~e~v~~~~sGs 165 (476)
.+|+++|||..+. ..++ .+|.|.+++.+++++. ..++| +.....+|.+.+++++ + ..++++|++|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 4688999999883 2233 6899999999999841 11222 2222344444444443 3 568999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+++..+.. ...+++.|++.+++|+++...+......++.. .....+++.+|+++.+.+...+.+. +
T Consensus 143 ~al~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (449)
T 3qgu_A 143 CDIARIQM---MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN----------GTGFDGIEYMVCNPDNHFFPDLSKA-K 208 (449)
T ss_dssp HHHHHHHH---HHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC----------SSSBTTEEEEECCGGGTTCCCGGGC-C
T ss_pred HHHHHHHH---HhCCCCEEEEcCCCChhHHHHHHHcCCccccc----------ccccceeEEEecccccCCcCChhHc-C
Confidence 99998833 23567889999999998765554443321110 0001123444443221111112221 2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhcc----CCCCchhhhhhhcC-C
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-G 318 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~----g~~pDi~t~sK~lg-~ 318 (476)
++++|+++..+|++|.+.+ .+.+++|+++|++||++||+||+|++| +.+. ......+ +....+.++||++| +
T Consensus 209 ~~~~v~l~~p~NPtG~~~~-~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAAT-RAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 5667777666777887765 555999999999999999999999988 5542 2222222 22334558999999 8
Q ss_pred CCcEEEEEecHHHHHh--------hcCCCCccccCCCCCcHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAYGGRRDIMEM--------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 319 G~~iG~~~~~~~i~~~--------l~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~ 387 (476)
|+|+||+++++++++. +. ......+++.++++++++.++|+.. +. ++..++++++.+++++.|+++
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999887652 22 1223445578999999999888642 11 456677777778888777764
Q ss_pred hhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------CcceEEeCCCcHHHH
Q 011856 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 460 (476)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~~~~~~~~t~e~i 460 (476)
++....+..|.++++.+. . . ...++.+.|+++ ||++.|+. ...+|+++..+++++
T Consensus 365 ----g~~~~~~~~~~~~~~~~~-~-~------------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i 426 (449)
T 3qgu_A 365 ----GFSVYGGDDAPYIWVGFP-G-K------------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENI 426 (449)
T ss_dssp ----TCCEEESSSSSEEEEECT-T-S------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ----CCeeeCCCCeeEEEEECC-C-C------------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHH
Confidence 333333335777777764 1 0 125677778775 99998763 346789988899999
Q ss_pred HHHHHHHHHHHHH
Q 011856 461 QHTITAAEKVKMR 473 (476)
Q Consensus 461 ~~~~~~l~~~~~~ 473 (476)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 94
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.97 E-value=8.8e-30 Score=254.40 Aligned_cols=336 Identities=16% Similarity=0.086 Sum_probs=219.5
Q ss_pred CCEEEecccChhhccCC--CCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCCCCCeEEE--eCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVPSIEMVRF--VNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~~~e~v~~--~~sGseA~ 168 (476)
|+.++||..|...++.+ +.+|.+.+++.+++++...++| ..++++++++++.......++|+| ++||++|+
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~ 104 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHH
Confidence 55678999886444455 4689999999998875322223 234455555555322114679999 99999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCC--CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
+.++++++.+.++++|++.+++||++...+.. .|..+...+.. ...+ .|+++|++.++++++.
T Consensus 105 ~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~--------------~d~~~l~~~l~~~~~~ 169 (394)
T 2ay1_A 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNF-MGLPVQTYRYFDAETRG--------------VDFEGMKADLAAAKKG 169 (394)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-HTCCEEEEECEETTTTE--------------ECHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCceEEEecccccCCc--------------cCHHHHHHHHHhCCCC
Confidence 99999766555778899999999996554433 34332221110 0000 1799999999865334
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchhhcc-CCCCch---hhhhhhcC-C
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPDL---TTLGKIIG-G 318 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pDi---~t~sK~lg-~ 318 (476)
++++++++.+|++|.+.+ .+++++|.++|++||++||+||+|++| +.+ .......+ ...+|+ .++||.++ +
T Consensus 170 ~~~~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 170 DMVLLHGCCHNPTGANLT-LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp CEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 677777777777887654 566999999999999999999999988 543 12122212 122343 37999999 7
Q ss_pred CCcEEEEEe---cHHHHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAYGG---RRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 319 G~~iG~~~~---~~~i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L~~ 386 (476)
|+|+||+++ ++++++.+.......+..++ +.|+++++++.++|+.. .+ ++..++++++.+++.+.|++
T Consensus 249 G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (394)
T 2ay1_A 249 RERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD 328 (394)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987 67655443210000111233 34889999988888743 11 45667777777888888877
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHHHHHHH
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTIT 465 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~ 465 (476)
+....++....+..|.++++.+. . ..+.+.+.++||++.++ +|+++. +++++++++++
T Consensus 329 ~~~~~~~~~~~~~~g~~~~~~~~-------------~----~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~ 387 (394)
T 2ay1_A 329 LSGSDRFGFVAEHRGMFSRLGAT-------------P----EQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILAR 387 (394)
T ss_dssp HHTSSTTTHHHHCCSSEEECCCC-------------H----HHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHH
T ss_pred cCCCCCeeEEcCCceEEEeeCCC-------------H----HHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHH
Confidence 64211121112234666554431 0 34566677899999874 577654 59999999999
Q ss_pred HHHHH
Q 011856 466 AAEKV 470 (476)
Q Consensus 466 ~l~~~ 470 (476)
+|+++
T Consensus 388 ~l~~~ 392 (394)
T 2ay1_A 388 AIIEV 392 (394)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99875
No 95
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=2.1e-30 Score=262.00 Aligned_cols=344 Identities=13% Similarity=0.072 Sum_probs=225.6
Q ss_pred CEEEecccChhhccCCCCcHHH--HHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhC-C-CCCe---EEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQV--LAALGETMKK-G-TSFGA---PCLLENVLAEMVISAV-P-SIEM---VRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v--~~a~~~~l~~-~-~~~~~---~~~~~~~la~~l~~~~-~-~~e~---v~~~~sGse 166 (476)
+.++||..|... .+|+ +|.+ .+++.+++.+ . ..|.. ..++++++++++.+.. + ++++ +++++||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999988532 5775 6666 7777776654 2 22221 2345555666554432 3 4678 999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
|++.+++.. ..+++.|++.+++||++...+....|..+...+...... ..|+++|++.+++++.+
T Consensus 125 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 125 GLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-------------HYTTDSLVEALQSYNKD 189 (430)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTS-------------CBCSHHHHHHHHHCCSS
T ss_pred HHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccC-------------CcCHHHHHHHHHhcCCC
Confidence 999999953 234578999999999865433220333322221110000 12789999999864445
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCEEEEeccccCc-cccccc-h-h-hccCCCCc------hhh
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYGG-A-Q-EYFGVTPD------LTT 311 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-----~g~llI~DEv~~g~-r~g~~~-~-~-~~~g~~pD------i~t 311 (476)
++++++..++|++|.+. +.+++++|.++|++ ||+++|+||+|++| +.+..+ . . ...+..++ +.+
T Consensus 190 ~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 66655544477778765 56669999999999 99999999999988 554311 1 1 22233344 347
Q ss_pred hhhhcC-CCCcEEEEEe---cHHHHHhhcCCCC-ccccCCCCCcHHHHHHHHHHHH-H---hcC-CCHHHHHHHHHHHHH
Q 011856 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGP-MYQAGTLSGNPLAMTAGIHTLK-R---LKE-PGTYEYLNKITGELT 381 (476)
Q Consensus 312 ~sK~lg-~G~~iG~~~~---~~~i~~~l~~~~~-~~~~~t~~~~~~~~aaa~aal~-~---~~~-~~~~~~~~~~~~~l~ 381 (476)
+||.++ +|+|+||+++ ++++++.+..... ..+..+++.|+++++++.++|+ . .+. +...++++++.+++.
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTK 348 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 7999999999 9999888763110 0112567889999999999987 3 221 224555556666666
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCCCcceEEeCC-CcHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-HSSDD 459 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~~~~~-~t~e~ 459 (476)
+.|++.....++....+..|.++++.+. . . + ..++.+.|++ +||++.++....+|+++. .++++
T Consensus 349 ~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~-~---------~---~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~ 414 (430)
T 2x5f_A 349 EVVYADQYHSHWQAYDFNSGYFMAIKVH-D-V---------D---PEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDD 414 (430)
T ss_dssp HHHTCGGGTTTEEECCCCBSSEEEEEES-S-S---------C---HHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGG
T ss_pred HHHHhhCCCCCceeeCCCceEEEEeCCC-C-C---------C---HHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHH
Confidence 6655321122322212233556787774 1 0 1 2567888887 999999975567899877 79999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|+++++++
T Consensus 415 i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 415 IPHVFDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 96
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=2.5e-29 Score=252.18 Aligned_cols=340 Identities=14% Similarity=0.055 Sum_probs=230.9
Q ss_pred cCCCEEEecccChhhc-cCCCCcHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011856 96 IDGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA 167 (476)
.+|++++||..+.... .++ .++++.+++.+++.++. .|+. ..+++.++++++.+.++ +.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688899999885421 445 57999999999987643 2322 24677778887766532 46899999999999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhcCCCC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (476)
++.+++.+ ..+++.|++.+++|+++...+ ...|..+...+.....+ + -|+++|++.+++ +
T Consensus 114 l~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~-------------~~~d~~~l~~~l~~---~ 174 (406)
T 1xi9_A 114 LQLIFGAL--LDPGDEILVPGPSYPPYTGLV-KFYGGKPVEYRTIEEED-------------WQPDIDDIRKKITD---R 174 (406)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEEEEGGGT-------------SEECHHHHHHHCCT---T
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCccHHHHH-HHcCCEEEEeecCCCcC-------------CcCCHHHHHHhhCc---C
Confidence 99999964 345678999999998855433 33343222111100000 1 179999999864 5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCC-chh--hhhhhcC-CCCc
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DLT--TLGKIIG-GGLP 321 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-Di~--t~sK~lg-~G~~ 321 (476)
+++|+++++++++|.+.+ ++++++|.++|++||++||+||+|+++ +.+.......++... +++ ++||.++ +|+|
T Consensus 175 ~~~v~i~~p~nptG~~~~-~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 175 TKAIAVINPNNPTGALYD-KKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred ceEEEEECCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE
Confidence 778888777778888764 556999999999999999999999988 533233333333111 343 6899998 7999
Q ss_pred EEEEE--ecH----HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 322 VGAYG--GRR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 322 iG~~~--~~~----~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
+||++ +++ ++++.+.. ..... ++.|+++++++.++|+...+ +++.++++++.+++.+.|+++ +.
T Consensus 254 ~G~~~~~~~~~~~~~l~~~l~~---~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 325 (406)
T 1xi9_A 254 LGYMYFVDPENKLSEVREAIDR---LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----PG 325 (406)
T ss_dssp CEEEEEECTTCTTHHHHHHHHH---HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----TT
T ss_pred EEEEEEecCchhHHHHHHHHHH---HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 99998 998 99888763 22222 67788999999988863221 344555666666666666542 21
Q ss_pred ceEeeee-ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC------CcceEEeCCCcHHHHHHHHH
Q 011856 394 AICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 465 (476)
Q Consensus 394 ~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~~ 465 (476)
...+.+. |.++++.+.... .....++.+.|+ ++||++.++. ...+|+++.+++++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~ 394 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP-----------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMD 394 (406)
T ss_dssp EECCCCCBSSEECCEECSCS-----------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccC-----------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHH
Confidence 1112333 445555653200 001256778887 8899998763 34688988899999999999
Q ss_pred HHHHHHHHhh
Q 011856 466 AAEKVKMRFL 475 (476)
Q Consensus 466 ~l~~~~~~~~ 475 (476)
+|++++++++
T Consensus 395 ~l~~~l~~~~ 404 (406)
T 1xi9_A 395 RFEKFMKERL 404 (406)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 97
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=4.2e-29 Score=251.75 Aligned_cols=336 Identities=13% Similarity=0.083 Sum_probs=222.0
Q ss_pred CEEEecccChhhccCCCCc--HHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011856 99 NEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e--~v~~~~sGse 166 (476)
..+|||..|+..++.|+.+ |.|.+++.+++++.....| ..++++++++++..... .++ ++++++||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3568888886556667655 8999999999987322222 24667777777765543 466 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC--CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|+..++++.....+++.|++.+++|+++...+ ...|..+...+. +...++ |+++|++.+++++
T Consensus 129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~ 193 (420)
T 4f4e_A 129 ALKIGADFLRTLNPKAKVAISDPSWENHRALF-DMAGFEVVAYPYYDAKTNGV--------------NFDGMLAALNGYE 193 (420)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH-HHTTCCEEEEECEETTTTEE--------------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH-HHcCCeEEEeeeeccccCcc--------------CHHHHHHHHHhCC
Confidence 99999876545567788999999998854433 333433222111 000000 7999999998665
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchh-hccCCCCch---hhhhhhcC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ-EYFGVTPDL---TTLGKIIG 317 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~-~~~g~~pDi---~t~sK~lg 317 (476)
++++++++++.+|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ..+ ..... ...+..+++ .++||.++
T Consensus 194 ~~~~~v~i~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 272 (420)
T 4f4e_A 194 PGTIVVLHACCHNPTGVDLN-DAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS 272 (420)
T ss_dssp TTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc
Confidence 57788888888888888765 444999999999999999999999988 432 11111 111222332 37999999
Q ss_pred -CCCcEEEEEe---cHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 318 -~G~~iG~~~~---~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L 384 (476)
.|+|+||+++ ++++++.+... .......+.+.+++++.++.+.|+.. ++ ++++++++++++++.+.|
T Consensus 273 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 352 (420)
T 4f4e_A 273 LYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERL 352 (420)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999853 56655443210 01111234455777777777666531 11 455667777777777777
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCC-cHHHHHHH
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQHT 463 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~-t~e~i~~~ 463 (476)
+++....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. ++++++++
T Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~l~~~gI~v~~~~----Ris~~~~~~~~i~~~ 411 (420)
T 4f4e_A 353 KAAGIERDFSFINAQRGMFSYSGLT-----------------SAQVDRLREEFGIYAVSTG----RICVAALNTRNLDVV 411 (420)
T ss_dssp HHTTCSSCCTHHHHSCSSEEECCCC-----------------HHHHHHHHHHHCEECCTTS----EEEGGGCCTTTHHHH
T ss_pred HhcCCCCCceeECCCccEEEEeCCC-----------------HHHHHHHHHhCCEEecCCC----eEEEecCCHHHHHHH
Confidence 7653222332222344555554331 1345566778899999863 776554 88889999
Q ss_pred HHHHHHHH
Q 011856 464 ITAAEKVK 471 (476)
Q Consensus 464 ~~~l~~~~ 471 (476)
+++|++++
T Consensus 412 ~~~l~~~l 419 (420)
T 4f4e_A 412 ANAIAAVL 419 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
No 98
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=1.1e-28 Score=243.98 Aligned_cols=322 Identities=14% Similarity=0.107 Sum_probs=222.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
++.+|||.++. ++++ .+|++++++.++++....| +.....++.+.++++++ ..+++++++||++|++.+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l- 102 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY--PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK- 102 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC--CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC--CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-
Confidence 36789999875 4566 7899999999988754333 33222577777777775 5789999999999999999853
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
..++++|++.+++|+++... +...|..+...+.. ... . .|+++|++.++ +++++|+++.++
T Consensus 103 -~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~-~~~---------~----~d~~~l~~~l~---~~~~~v~~~~p~ 163 (365)
T 3get_A 103 -LNSKNAFLQAGVTFAMYEIY-AKQCGAKCYKTQSI-THN---------L----DEFKKLYETHK---DEIKLIFLCLPN 163 (365)
T ss_dssp -CCTTCEEEECSSCCTHHHHH-HHHHTCEEEECSSS-SCC---------H----HHHHHHHHHTT---TTEEEEEEESSC
T ss_pred -hCCCCEEEEeCCChHHHHHH-HHHcCCEEEEEecC-CCC---------C----CCHHHHHHHhC---CCCCEEEEcCCC
Confidence 34567888888888875443 33344433322210 000 0 17888988886 367888887667
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--ccc--cchhhc---cCCCCchhhhhhhcC-CCCcEEEEEe
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY--GGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYGG 327 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~--~~~~~~---~g~~pDi~t~sK~lg-~G~~iG~~~~ 327 (476)
+++|.+.+.++ +++|.++| ++|+++|+||+|+++ . .+. ...... .+....+.++||.++ +|+|+||+++
T Consensus 164 nptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 241 (365)
T 3get_A 164 NPLGECLDASE-ATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA 241 (365)
T ss_dssp TTTCCCCCHHH-HHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE
T ss_pred CCCCCCcCHHH-HHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc
Confidence 77888887443 66666666 679999999999876 3 332 111122 222233448999998 8999999999
Q ss_pred cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 328 ~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
++++++.+.. ...+++.|+++++++.++|+..+. ++..++++++.+++.+.|+++ ++ ...++.|.++++
T Consensus 242 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~-~~~~~~~~~~~~ 311 (365)
T 3get_A 242 NANIISAFYK-----LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH----NI-KIIDSYTNFITY 311 (365)
T ss_dssp CHHHHHHHHH-----HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TC-EECCCSSSEEEE
T ss_pred CHHHHHHHHH-----hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CC-EECCCCCeEEEE
Confidence 9999988863 123467899999999988863211 344555555666666666554 32 234567788777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---CcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
.+... ...++.+.|.++||++.++. ...+|+++. +++++++++++|++++
T Consensus 312 ~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 312 FFDEK--------------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ECSSS--------------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ECCCC--------------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 76421 13578889999999999875 456888876 8999999999999876
No 99
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=3.6e-28 Score=245.55 Aligned_cols=338 Identities=13% Similarity=0.046 Sum_probs=223.9
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHH------------HhcCCCC---CCCHHHHHHHHHHHhhCC-----CCCeEE
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETM------------KKGTSFG---APCLLENVLAEMVISAVP-----SIEMVR 159 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l------------~~~~~~~---~~~~~~~~la~~l~~~~~-----~~e~v~ 159 (476)
.++||.++. ++++ +|.+.+++.++. .....|. +..++++++++++.+.++ +.++++
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 467887664 5665 578888887532 1111222 234677777777765432 368999
Q ss_pred EeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
+++|++++++.+++.. ...++.|++.+++||++........|..+...+.....++ ..|+++|++.
T Consensus 113 ~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~ 178 (428)
T 1iay_A 113 MAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNF------------KITSKAVKEA 178 (428)
T ss_dssp EEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTT------------CCCHHHHHHH
T ss_pred EccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCC------------cCCHHHHHHH
Confidence 9999999999999953 2345789999999988544332233443322221100110 0179999998
Q ss_pred Hhc---CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccc-hhhcc-------CCCC
Q 011856 240 FEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-------GVTP 307 (476)
Q Consensus 240 l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-------g~~p 307 (476)
+++ .+.++++|+++..++++|.+. +++++++|.++|++||++||+||+|+++ +.+..+ ....+ ++.+
T Consensus 179 l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 179 YENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred HHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence 864 223577777665666778776 5677999999999999999999999987 443221 11111 2236
Q ss_pred c----hhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---C--CCHHHHHHHH
Q 011856 308 D----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKI 376 (476)
Q Consensus 308 D----i~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~ 376 (476)
| +.++||.+| +|+|+||+++ ++++++.+.. ...+++.|+++++++.++|+... + ++..++++++
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 7 448999998 8999999988 6888887762 12346778999998888876321 1 3455666677
Q ss_pred HHHHHHHHHHHhhhcCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC------Ccc
Q 011856 377 TGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 448 (476)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~ 448 (476)
.+++.+.|+++ ++.. +++ .|.++++.+..... .+......++.+.|+++ ||++.++. ...
T Consensus 333 ~~~l~~~L~~~----g~~~-~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 333 HKHFTNGLEVV----GIKC-LKNNAGLFCWMDLRPLLR-------ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHT----TCCB-CCCSSSSEEEEECGGGCS-------SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHhc----CCcc-cCCCeeEEEEEechhhcC-------CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 77777777664 2221 233 57788888743110 01112345788889876 99998864 235
Q ss_pred eEEeCC-CcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLA-HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~-~t~e~i~~~~~~l~~~~~~ 473 (476)
+|+++. ++++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788776 8999999999999998864
No 100
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.96 E-value=3.2e-28 Score=242.44 Aligned_cols=334 Identities=16% Similarity=0.178 Sum_probs=223.1
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~-~~~---~~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~ 170 (476)
|+.++||..+. ..++ .++.+.+++.+.++.+. .|. +..+++.++++++.+.++ .+++|++++||++|+..
T Consensus 30 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 34567777763 2233 47899999999887632 222 134677788888876553 46799999999999999
Q ss_pred HHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEE
Q 011856 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (476)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (476)
+++.. ..+++.|++.+++|+++.. .+...|..+...+.....+. ..|+++|++.+++ ++++|
T Consensus 107 ~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~v 168 (385)
T 1b5p_A 107 LFQAI--LDPGDEVIVLSPYWVSYPE-MVRFAGGVVVEVETLPEEGF------------VPDPERVRRAITP---RTKAL 168 (385)
T ss_dssp HHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEECCGGGTT------------CCCHHHHHTTCCT---TEEEE
T ss_pred HHHHh--cCCCCEEEEcCCCchhHHH-HHHHcCCEEEEeecCcccCC------------CCCHHHHHHhcCC---CCEEE
Confidence 99853 3456789999999987543 33334443322211100010 0178999888863 46666
Q ss_pred EEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch--hhhhhhcC-CCCcEEEEE
Q 011856 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTLGKIIG-GGLPVGAYG 326 (476)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi--~t~sK~lg-~G~~iG~~~ 326 (476)
++...+|++|.+.+ .+.+++|.++|++||++||+||+|..+ ..+.......+.-..++ .+|||.++ +|+|+||++
T Consensus 169 ~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~ 247 (385)
T 1b5p_A 169 VVNSPNNPTGAVYP-KEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC 247 (385)
T ss_dssp EEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred EEeCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEE
Confidence 66555666777765 455999999999999999999999887 43321111112111122 37999999 799999999
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (476)
+++++++.+.+ .....+++.+++++.++.++|+. ..+ ++..++++++.+++.+.|+++ ++....+..|
T Consensus 248 ~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~ 320 (385)
T 1b5p_A 248 GPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSGA 320 (385)
T ss_dssp CCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSBT
T ss_pred eCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCee
Confidence 99999888762 22344667889999988888863 221 445666777777777777765 2222223344
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
.++++.+.... ....++.+.|+++||.+.++. ...+|+++.++++++++++++|+++++
T Consensus 321 ~~~~~~~~~~~------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 321 FYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp TEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred EEEEEecCCCC------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 55565553100 012567888889999998863 246899988999999999999987764
No 101
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.96 E-value=1.1e-28 Score=246.72 Aligned_cols=334 Identities=13% Similarity=0.037 Sum_probs=219.1
Q ss_pred EEEecccChhhccCCCCc--HHHHHHHHH-HHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011856 100 EYIDYVGSWGPAIIGHAD--DQVLAALGE-TMKKGTSFGA-----PCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~-~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e--~v~~~~sGse 166 (476)
.++||..|+..++.++.+ |.|.+++.+ ++++....+| ..++++++++++..... .++ ++++++||++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence 478888886545566654 999999999 8876322222 24667777777765544 467 8999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCC--CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|++.++++.....+++.|++.+++|+++...+ ...|..+...+. +...++ |+++|++.+++++
T Consensus 107 a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~~ 171 (397)
T 3fsl_A 107 ALKVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEVSTYPWYDEATNGV--------------RFNDLLATLKTLQ 171 (397)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSCCHHHHHHH-HHTTCCEEEECCEETTTTEE--------------CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHH-HHcCCceEEEeeeeccCCcC--------------cHHHHHHHHHhCC
Confidence 99999876545567788999999998854333 333433222111 000000 8999999998765
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc--ccchhhcc-CCCCc---hhhhhhhcC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPD---LTTLGKIIG 317 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pD---i~t~sK~lg 317 (476)
+++++++++..+|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+ .......+ +..++ +.++||.++
T Consensus 172 ~~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 250 (397)
T 3fsl_A 172 AGSIVLLHPCCHNPTGADLTNDQ-WDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS 250 (397)
T ss_dssp TTCEEEECSSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCCEEEEeCCCCCCCCcCCCHHH-HHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc
Confidence 56788888777788888766554 999999999999999999999988 432 11111111 22222 337999999
Q ss_pred -CCCcEEEEEe---cHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 318 -~G~~iG~~~~---~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L 384 (476)
+|+|+||+++ ++++++.+... .......+.+.+.+++.++.++++.. .+ ++..++++++.+++.+.|
T Consensus 251 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (397)
T 3fsl_A 251 LYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVL 330 (397)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999964 55665543210 01111234445677777776666421 11 456677777888888888
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCC-cHHHHHHH
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQHT 463 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~-t~e~i~~~ 463 (476)
+++....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. ++++|+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~g~----Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 331 STEMPERNFDYLLNQRGMFSYTGLS-----------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHCTTSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTTC----EEEGGGCCTTTHHHH
T ss_pred HhcCCCCCceeecCCceEEEecCCC-----------------HHHHHHHHHhCCEEECCCC----eEEEEecCHhhHHHH
Confidence 7764221222222334555554431 1345567778899999875 776554 88899999
Q ss_pred HHHHHHH
Q 011856 464 ITAAEKV 470 (476)
Q Consensus 464 ~~~l~~~ 470 (476)
+++|+++
T Consensus 390 ~~~l~~~ 396 (397)
T 3fsl_A 390 AKAFAAV 396 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
No 102
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=1.4e-28 Score=248.82 Aligned_cols=339 Identities=11% Similarity=0.073 Sum_probs=218.2
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCCC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGT 165 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGs 165 (476)
.+|+++|||..+ ++....+|.|.+|+.+++++.. .++|. .++++++++++.+.++ ..++|+|++|++
T Consensus 53 ~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIG---DTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSC---CCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCC---CCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 357889999998 6665579999999999988521 12222 3455556665543334 578999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
+++..+.. ...+++.|++.+++|++....+......+..... .. ...++..++.++.+.+...+++. +
T Consensus 130 ~al~~l~~---l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~l~~~-~ 197 (432)
T 3ei9_A 130 CDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-VQ-------KYGNIEYMRCTPENGFFPDLSTV-G 197 (432)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETT-TT-------EETTCEEEECCGGGTTSCCGGGC-C
T ss_pred HHHHHHHH---HcCCCCEEEEeCCCCHHHHHHHHHcCCccccccc-cc-------ccCceEEeccCcccCCcCChhhC-C
Confidence 99987533 2346788999999999876555444332211000 00 00012333332111111112222 2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc----CCCCchhhhhhhcC-CC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GG 319 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~----g~~pDi~t~sK~lg-~G 319 (476)
++++|+++.++|++|.+.+.+ .+++|.++|++||++||+||+|++| ..+.......+ +....+.++||++| +|
T Consensus 198 ~~~~v~l~~p~NPtG~~~~~~-~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAATRE-QLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCCCCCHH-HHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 456666666677788876544 4999999999999999999999988 44332222122 12223448999999 89
Q ss_pred CcEEEEEecHHH--------HHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-h-cC-CCHHHHHHHHHHHHHHHHHHHh
Q 011856 320 LPVGAYGGRRDI--------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-L-KE-PGTYEYLNKITGELTQGIIDAG 388 (476)
Q Consensus 320 ~~iG~~~~~~~i--------~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~-~~-~~~~~~~~~~~~~l~~~L~~~~ 388 (476)
+|+||+++++++ ++.+.. .....+++.++++++++.++++. . +. ++..++++++.+++++.|+++
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 352 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNR---IICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL- 352 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHH---HHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEChHHhhcchHHHHHHHHH---HhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999999887 555542 22334556789999998888742 1 11 456677777777777777764
Q ss_pred hhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHH
Q 011856 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~ 461 (476)
++.......|.++++.+... + ..++...|++ +||++.++. ...+|+++..++++++
T Consensus 353 ---g~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~ 415 (432)
T 3ei9_A 353 ---GYDVYGGKNAPYVWVHFPNQ-----------S---SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENIL 415 (432)
T ss_dssp ---TCCEEECSSSSEEEEECTTS-----------C---HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred ---CceecCCCcceEEEEECCCC-----------C---HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHH
Confidence 33222233577777776411 1 2456677765 499998753 3468999999999999
Q ss_pred HHHHHHHHHH
Q 011856 462 HTITAAEKVK 471 (476)
Q Consensus 462 ~~~~~l~~~~ 471 (476)
+++++|++--
T Consensus 416 ~~l~rl~~~~ 425 (432)
T 3ei9_A 416 EACRRFKQLY 425 (432)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 103
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=9.1e-29 Score=243.74 Aligned_cols=313 Identities=12% Similarity=0.061 Sum_probs=212.3
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
.+++|||.+|. +++|+. |.+ + +... ..|+.....++.+.++++++ ++++|++++|++++++.+++..
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a----~~~~--~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~- 95 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--T----QQTL--NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF- 95 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--C----CCCT--TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-
T ss_pred CCceEEeeCCC--CCCCCC-HhH--h----hhhh--ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH-
Confidence 35689999886 788874 555 2 2222 23333335677777777775 5689999999999999999953
Q ss_pred hccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 177 AFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 177 ~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
..++ ++|++.+++||++...+ ...|..+...+.. .+. ..|++++++.++ ++++|+++++
T Consensus 96 -~~~g~d~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~----~~~~v~l~~p 155 (356)
T 1fg7_A 96 -CEPGKDAILYCPPTYGMYSVSA-ETIGVECRTVPTL--DNW------------QLDLQGISDKLD----GVKVVYVCSP 155 (356)
T ss_dssp -CCTTTCEEEECSSSCTHHHHHH-HHHTCEEEECCCC--TTS------------CCCHHHHHTSCT----TEEEEEEESS
T ss_pred -hCCCCCEEEEeCCChHHHHHHH-HHcCCEEEEeeCC--CCC------------CCCHHHHHHHhc----CCCEEEEeCC
Confidence 2234 78999999999865444 3344433322211 110 017888887775 4677777666
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchh-hccCCCCchhhhhhhcC-CCCcEEEEEecHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~ 332 (476)
+|++|.+.+ .+++++|.++|+ ||++||+||+|++| +....... +.++....+.++||.+| +|+|+||++++++++
T Consensus 156 ~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 233 (356)
T 1fg7_A 156 NNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI 233 (356)
T ss_dssp CTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHH
Confidence 777887765 556999999999 99999999999987 32222211 22222233458999999 899999999999998
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEeeeeceeEEEEE
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---EPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFF 408 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~ 408 (476)
+.+.. ...+++.|+++++++.++|+... -++..++++++++++.+.|+++ +. ....++.|.++++.+
T Consensus 234 ~~l~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~ 304 (356)
T 1fg7_A 234 NLLMK-----VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARF 304 (356)
T ss_dssp HHHHH-----HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEE
T ss_pred HHHHH-----hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceEECCCCCeEEEEEC
Confidence 88763 12355789999999988886422 1334455556666666666553 32 223456677887776
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc-CC----CcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~~----~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
.+ ..++.+.|.++||++.+ +. .+.+|+++. +++|+++++++|+++
T Consensus 305 ~~----------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 305 KA----------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp TT----------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred CC----------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 30 25678888999999998 43 235788876 689999999998753
No 104
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=4.5e-28 Score=243.82 Aligned_cols=344 Identities=11% Similarity=-0.011 Sum_probs=219.9
Q ss_pred CEEEecccChhhcc-CCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhh------C---CCCCeEEEeCC
Q 011856 99 NEYIDYVGSWGPAI-IGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISA------V---PSIEMVRFVNS 163 (476)
Q Consensus 99 ~~~iD~~~~~~~~~-lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~------~---~~~e~v~~~~s 163 (476)
+.+|||..+..... ....++.+.+++.+++++....+| ..+++.++++++.+. . ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 45788888743221 234789999999999876432222 246667777777621 1 14689999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-CCHHHHHHHHhc
Q 011856 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFEN 242 (476)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~ 242 (476)
|++|++.+++.. ..+++.|++.+++||++... +...|..+...+..... .+ .|+++|++.+++
T Consensus 113 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~-~~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 113 GSHGILMAITAI--CDAGDYALVPQPGFPHYETV-CKAYGIGMHFYNCRPEN-------------DWEADLDEIRRLKDD 176 (416)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGG-------------TTEECHHHHHHHCCT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHH-HHHcCcEEEEeecCccc-------------CCCCCHHHHHHHhcc
Confidence 999999999953 33567899999999986543 33334332211110000 01 179999998864
Q ss_pred CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-----cchhhccCCCCc---hhhhh
Q 011856 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGVTPD---LTTLG 313 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-----~~~~~~~g~~pD---i~t~s 313 (476)
++++|++...++++|.+. +++++++|.++|++||++||+||+|++| +.+. ......++..++ +.++|
T Consensus 177 ---~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 177 ---KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ---CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 455554444466778765 4667999999999999999999999988 5543 222222222222 23799
Q ss_pred hhcC-CCCcEEEEEecHH--HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011856 314 KIIG-GGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 314 K~lg-~G~~iG~~~~~~~--i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (476)
|.++ +|+|+||++++++ +++.+..........+++.|+++++++.++|+...+ ++..++++++.+++.+.|++
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 331 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE- 331 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9987 6899999988663 433332100011123567899999999999874321 33445555555556555543
Q ss_pred hhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC----CcceEEeCCCcHHHHH
Q 011856 388 GKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQ 461 (476)
Q Consensus 388 ~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~~~~~~~~t~e~i~ 461 (476)
++....+ +..|.++++.+..... ++.....++.+.|+ ++||++.++. ...+|+++.+++++++
T Consensus 332 ---~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~ 400 (416)
T 1bw0_A 332 ---CIGLAPTMPRGAMYLMSRIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYR 400 (416)
T ss_dssp ---STTEEECCCCBTTEEEEEECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHH
T ss_pred ---CCCCcccCCCeeEEEEEeCCHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHH
Confidence 3222222 3346777777742100 00011246777775 8899998864 3468898889999999
Q ss_pred HHHHHHHHHHHHh
Q 011856 462 HTITAAEKVKMRF 474 (476)
Q Consensus 462 ~~~~~l~~~~~~~ 474 (476)
+++++|++++++.
T Consensus 401 ~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 401 EAVERIKAFCQRH 413 (416)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 105
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=9.9e-28 Score=241.49 Aligned_cols=338 Identities=11% Similarity=0.014 Sum_probs=220.6
Q ss_pred CCEEEecccChhhccCCC--CcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCCCCC---eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~~~e---~v~~~~sGseA~ 168 (476)
|..+|||..|...+.-+. .++.+.+++.+..... ..|+ +..+++.++++++.... +.+ ++++++||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF-RPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc-CccccccEEECCchHHHH
Confidence 334566666621111111 5778888876644322 1222 23566777777776655 355 999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC--CCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~ 246 (476)
..+++.. ..+++.|++.+++|+++... +...|..+...+.....+ ..|+++|++.+++. ++.
T Consensus 116 ~~~~~~l--~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 116 HHLIHNY--TEPGDEVLTADWYWGAYRVI-CSDTGRTLVTYSLFDEHN-------------NFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHHH--SCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECSBCTTS-------------SBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHh--cCCCCEEEECCCCchhHHHH-HHHcCCEEEEEeeeCCCC-------------CcCHHHHHHHHHHhhccCC
Confidence 9999842 34567888888888875543 344444333322211110 11799999998742 124
Q ss_pred eEEEEEccc-CCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCc-cccc---cchhhccCCCCc---hh--
Q 011856 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD---LT-- 310 (476)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~-r~g~---~~~~~~~g~~pD---i~-- 310 (476)
.++++++.. +|++|.+.+.++ +++|.++|+ +||++||+||+|.+| +.+. .+.....++.+| ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKD-WDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 446666644 778888876555 999999999 899999999999988 6543 222233345556 22
Q ss_pred hhhhhcC-CCCcEEEEEe---cHHHHHhhcCCCCccc-cCCCCCcHHHHHHHHHHHHHh------c-C-CCHHHHHHHHH
Q 011856 311 TLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRL------K-E-PGTYEYLNKIT 377 (476)
Q Consensus 311 t~sK~lg-~G~~iG~~~~---~~~i~~~l~~~~~~~~-~~t~~~~~~~~aaa~aal~~~------~-~-~~~~~~~~~~~ 377 (476)
+|||.++ +|+|+||+++ ++++++.+........ ....+.+.+++.++.++|+.. . . .++.++++++.
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRA 338 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 7999999998 8999888763111111 122357888888887777422 1 1 24456667777
Q ss_pred HHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-Cc
Q 011856 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 456 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t 456 (476)
+++.+.|+++ ++....+..|.++++.+. + ..++.+.|.++||++.|+. ..+|+++. ++
T Consensus 339 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~-~~iRis~~~~~ 397 (418)
T 3rq1_A 339 DIFKQEAAQV----GLPMLPYRGGFFITIPTD-------------S---ANAICEELKKEHIYVIALA-NGIRIAACGIP 397 (418)
T ss_dssp HHHHHHHHHH----TCCCCCCCSSSEEEEECT-------------T---HHHHHHHHHHTTEECEECS-SEEEEEGGGSC
T ss_pred HHHHHHHHhc----CCCCCCCCceEEEEcCCC-------------C---HHHHHHHHHhCCEEEecCC-CCeEEEEecCC
Confidence 7777777765 222222233444444431 1 2567788899999999874 56899876 69
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|+++++++
T Consensus 398 ~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 398 KCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 106
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=7.5e-28 Score=240.99 Aligned_cols=329 Identities=13% Similarity=0.103 Sum_probs=216.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC----CCCC-CCHHHHHHHHHHHhh--CC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA-PCLLENVLAEMVISA--VP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~----~~~~-~~~~~~~la~~l~~~--~~--~~e~v~~~~sGseA~ 168 (476)
|+++|||..+. ..++ .+|.+.+++.+++++.. ..+| +.....+|.+.++++ .+ ..++|++++|+++++
T Consensus 32 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 66788988874 2233 68999999999887621 1233 333446777777776 33 468999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
..++++ +.+++.|++.+++|+++... +...|.. +...+.....++. .|+ ++. +++
T Consensus 109 ~~~~~~---~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~------------~~l---~~~-----~~~ 164 (400)
T 3asa_A 109 FRLLSF---FGPNQTVAIQDPSYPAYLDI-ARLTGAKEIIALPCLQENAFF------------PEF---PED-----THI 164 (400)
T ss_dssp HHHHHH---HCSSCEEEEEESCCHHHHHH-HHHTTCSEEEEEECCGGGTTC------------CCC---CTT-----CCC
T ss_pred HHHHHH---cCCCCEEEECCCCcHHHHHH-HHHcCCcceEecccchhcCcc------------cCh---hhc-----cCc
Confidence 987653 45678899999999986543 3334443 3222111100110 021 111 256
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc-cchhhccCCCCc----hhhhhhhcC-CCC
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD----LTTLGKIIG-GGL 320 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pD----i~t~sK~lg-~G~ 320 (476)
++|++++.++++|.+.+ .+++++|.++|++||++||+||+|++| +.+. ......++..+| +.++||.+| +|+
T Consensus 165 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl 243 (400)
T 3asa_A 165 DILCLCSPNNPTGTVLN-KDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI 243 (400)
T ss_dssp SEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC
T ss_pred cEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch
Confidence 67777666777888765 566999999999999999999999988 5443 112222221133 458999998 899
Q ss_pred cEEEEEecHHH-------HHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 321 PVGAYGGRRDI-------MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 321 ~iG~~~~~~~i-------~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
|+||+++++++ ++.+.. .....++ +.|+++++++.++|+....++..++++++.+++.+.|++. +
T Consensus 244 riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g 316 (400)
T 3asa_A 244 RLGWTVIPQELTYADGHFVIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----G 316 (400)
T ss_dssp CCEEEECCTTCBCTTSCBHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred heeEEeeChhhccchhhhHHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----C
Confidence 99999999887 554431 1122233 5789999999999886533677888888888888888774 3
Q ss_pred CceEeeeeceeEEEE-EecCCCcCchhhcccchHHHHHHHHHHHH-CCeEeccCC------CcceEEeCCCcHHHHHHHH
Q 011856 393 HAICGGYISGMFGFF-FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTI 464 (476)
Q Consensus 393 ~~~~v~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~~~~t~e~i~~~~ 464 (476)
+.......|.++++. +... . + ..++.+.|++ +||++.++. ...+|+++..+++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~---------~---~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l 383 (400)
T 3asa_A 317 FEVFGGEHAPYLWVKPTQAN-I---------S---DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAAC 383 (400)
T ss_dssp CEEEECSSSSEEEEECCCTT-C---------C---TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHH
T ss_pred CeeeCCCCceEEEEeccCCC-C---------C---HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHH
Confidence 322222346778887 5321 0 0 1246666765 599998763 3458898888999999999
Q ss_pred HHHHHHHHHh
Q 011856 465 TAAEKVKMRF 474 (476)
Q Consensus 465 ~~l~~~~~~~ 474 (476)
++|++++++.
T Consensus 384 ~~l~~~~~~~ 393 (400)
T 3asa_A 384 ERLQMAPALQ 393 (400)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 107
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.96 E-value=4.3e-28 Score=243.68 Aligned_cols=340 Identities=13% Similarity=0.049 Sum_probs=217.4
Q ss_pred CCCEEEecccChhhccCCC--CcHHHHHHHHH-HHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011856 97 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGE-TMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~-~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~--~~s 163 (476)
+|+.++||..|...++.|+ .+|.+.+++.+ .++.....+| ..+++.++++++....+ .+++|++ ++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 3566788888843233443 46899999998 7764322222 23556666666644332 3689999 999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
|++|++.++++.+.+.+++.|++.+++|+++...+ ...|..+...+.....+. ..|+++|++.++++
T Consensus 107 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 107 GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETK------------SLDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTT------------EECHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH-HHcCceEEEEeeecCCCC------------ccCHHHHHHHHHhC
Confidence 99999999876656667788999999999965433 333433222111000000 01799999999764
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc---ccchh-hccCCCC----c--hhhh
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ-EYFGVTP----D--LTTL 312 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~-~~~g~~p----D--i~t~ 312 (476)
+...+++++...++++|.+.+ .+.+++|.++|++||++||+||+|.+| ..+ ..... ...+..+ + +.++
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPT-SEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence 333455564666666777665 455999999999999999999999988 443 22122 2111223 2 3379
Q ss_pred hhhcCC-CCcEEEEE--e-----cHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-------C-CCHHHH
Q 011856 313 GKIIGG-GLPVGAYG--G-----RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-------E-PGTYEY 372 (476)
Q Consensus 313 sK~lg~-G~~iG~~~--~-----~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-------~-~~~~~~ 372 (476)
||.++. |+|+||++ + +++ +++.+.. .....+.+.++++++++.++|+... . ++..++
T Consensus 253 sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1yaa_A 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999996 99999998 7 666 7776652 1223334558899999888887441 1 456667
Q ss_pred HHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe
Q 011856 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 452 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~ 452 (476)
++++.+++.+.|+++....++....+..|.++++.+ +. ..+...+.++||++.+ .+|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~l~~~gi~v~~----~~Ris 388 (412)
T 1yaa_A 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--------------TP---QMVKRLEETHAVYLVA----SGRAS 388 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--------------CH---HHHHHHHHHHCEECCT----TSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--------------CH---HHHHHHHHhCCEEecc----CcEEE
Confidence 777777777777765311012211122333333222 11 2444445578999987 46887
Q ss_pred CCC-cHHHHHHHHHHHHHHHHHh
Q 011856 453 LAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
+.. +++++++++++|+++++.+
T Consensus 389 ~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 389 IAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EccCCHhHHHHHHHHHHHHHHhh
Confidence 654 9999999999999988753
No 108
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=3.6e-27 Score=230.22 Aligned_cols=314 Identities=13% Similarity=0.110 Sum_probs=218.8
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~a 175 (476)
+.+++|||.+|. +++| .+|.+.+++.++++... .|+.....+|.+.++++++ ..+++++++|+++++..+++.
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~--~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~- 87 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARIN--RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAE- 87 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTT--SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH-
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhc--cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHh-
Confidence 456789999886 6777 68999999998877643 3466777889999998886 567999999999999999984
Q ss_pred HhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
+ +++.|++.+++|+++.. .+...|..+...+.....+ -|+++|++. .++++++++.+
T Consensus 88 --~-~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~-----~~~~~v~i~~p 144 (337)
T 3p1t_A 88 --F-SSMRFVTAWPGFDGYRA-RIAVSGLRHFEIGLTDDLL--------------LDPNDLAQV-----SRDDCVVLANP 144 (337)
T ss_dssp --S-TTSEEEEESSSCSHHHH-HHTTSCCEEEEECBCTTSS--------------BCHHHHTTC-----CTTEEEEEESS
T ss_pred --c-CCCeEEEeCCCcHHHHH-HHHHcCCEEEEecCCCCCC--------------CCHHHHHhh-----cCCCEEEEeCC
Confidence 4 67789998988887543 3333333322211111001 178887754 14567777777
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
++++|.+.+ ++++.++|+++++ +|+||+|.+| ..+... ....+....+.++||.++ +|+|+||+++++++++
T Consensus 145 ~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 218 (337)
T 3p1t_A 145 SNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA 218 (337)
T ss_dssp CTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred CCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence 788899999 8889999999997 5669999877 433211 111111122347999998 8999999999999999
Q ss_pred hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 334 ~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.+... ..+++.+++++.++.++|+.... ++..+++.++.+++.+.|+++ ++. ..+..|.++++...+
T Consensus 219 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~~-- 286 (337)
T 3p1t_A 219 AMKRK-----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----GYR-VASSEANFVLVENAA-- 286 (337)
T ss_dssp HHHTT-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCC-BCCCSSSEEEEECTT--
T ss_pred HHHhh-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----cCE-ECCCCCeEEEEEcCC--
Confidence 88742 23456788888888887763221 344555666666666666654 322 134567777766532
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
. ..+.+.|.++||.+.++. ...+|+++. +++++++++++|+++.+
T Consensus 287 -----------~---~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 -----------G---ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----------T---HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred -----------H---HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 1 356678889999998864 246788876 79999999999988754
No 109
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.95 E-value=9.4e-28 Score=237.48 Aligned_cols=324 Identities=13% Similarity=0.130 Sum_probs=223.5
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC--------CC-CCCCHHHHHHHHH-HHhhCCCCCeEEEeCCHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--------SF-GAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACM 169 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--------~~-~~~~~~~~~la~~-l~~~~~~~e~v~~~~sGseA~~ 169 (476)
.|+|+.. +.++.+|++.+++.+++.... .+ .++.+...++.++ ++++++.. +++|++||++|++
T Consensus 10 i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 10 INIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKF 83 (371)
T ss_dssp EECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHH
T ss_pred EEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHH
Confidence 4566532 346679999999999887532 11 1245667889999 99988533 9999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC--CCe
Q 011856 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEI 247 (476)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~ 247 (476)
.+++.+ ..+++.|++.+++||+.... +...|..+...+.+..... .-|+++|++.++++. +++
T Consensus 84 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 84 AVMHSL--AKKDAWVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDY------------AITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHH--CCTTCEEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTC------------CCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHH--hCCCCEEEEccCcchHHHHH-HHHcCCeEEEeecccCCCC------------CcCHHHHHHHHHhhcccCCe
Confidence 999964 44667888888899886554 4444443332220011000 017999999997421 368
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~ 325 (476)
++|+++++++++|.+.+ +++|.++|++||++||+||+|+.+... .....++ +|++ +++|.+++|.|+|++
T Consensus 149 ~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~--~di~~~s~sK~~~~~~~~G~~ 220 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIG--ADFIVGSGHKSMAASGPIGVM 220 (371)
T ss_dssp EEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHT--CSEEEEEHHHHSSCCSSCEEE
T ss_pred EEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCCCC--CChhhcC--CCEEEecCCcCCCCCCCcEEE
Confidence 88999999999999998 899999999999999999999754221 1122333 5655 689999987899999
Q ss_pred EecHHHHHh-hcCCCCccccC-----CCCCcHHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHhhhcCCceEe
Q 011856 326 GGRRDIMEM-VAPAGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 326 ~~~~~i~~~-l~~~~~~~~~~-----t~~~~~~~~aaa~aal~~~~~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
++++++++. +.+.... ... +++.++..++++.++++.+.+ ++.+++ +++.+++.+.|+++ ++....
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 294 (371)
T 2e7j_A 221 GMKEEWAEIVLRRSEKY-KNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLG 294 (371)
T ss_dssp EECTTTTTTTTCBCSSC-TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEES
T ss_pred EEechhhhhhccccccC-cccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEec
Confidence 999998877 6542211 111 456678888888888887765 667778 88888998888875 222111
Q ss_pred ee--eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC-------C--CcceE-EeCC---CcHHHHHH
Q 011856 398 GY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQH 462 (476)
Q Consensus 398 ~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~--~~~~~-~~~~---~t~e~i~~ 462 (476)
+. .+.++++.+. ...++.+.|.++||.+.+. + ...+| +++. ++++++++
T Consensus 295 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~ 358 (371)
T 2e7j_A 295 DNPHNHDLMFFHAE----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDY 358 (371)
T ss_dssp SSSCCSSEEEEECH----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHH
T ss_pred CCCccCceEEEECC----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHH
Confidence 11 4667777662 1356778888889988761 1 23457 6544 79999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
++++|+++++++
T Consensus 359 ~~~~l~~~~~~~ 370 (371)
T 2e7j_A 359 VLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 110
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.95 E-value=1.5e-26 Score=233.51 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHhhCC-C---------CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 137 PCLLENVLAEMVISAVP-S---------IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~---------~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
..+++.++++++.+.++ . .++|++++|+++|+..+++.. ...++.|++.+++|+++... +...|..+
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~ 156 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQS-LHPLGCNI 156 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HGGGTCEE
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHH-HHHcCCEE
Confidence 34677777777776543 2 268999999999999999953 33467899999999885443 33344432
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---------CCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
...+... .+ .|+++|++.+++++ +++++|+++| .+|++|.+.+ .+.+++|.++|
T Consensus 157 ~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~a 220 (425)
T 2r2n_A 157 INVASDE-SG--------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLT-SERKKEIYELA 220 (425)
T ss_dssp EEECEET-TE--------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCC-HHHHHHHHHHH
T ss_pred EEeCcCC-CC--------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCC-HHHHHHHHHHH
Confidence 2211100 01 27999999997422 3567887765 4556787765 55699999999
Q ss_pred HHhCCEEEEeccccCc-ccccc-chhhcc---CCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcH
Q 011856 277 KENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~-~~~~~~---g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~ 351 (476)
++||++||+||+|+++ +.+.. .....+ +....+.+|||.+++|+|+||+++++++++.+.. .....+++.|+
T Consensus 221 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~---~~~~~~~~~~~ 297 (425)
T 2r2n_A 221 RKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVIL---HIQVSTLHPST 297 (425)
T ss_dssp HHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHH---HHHTTTCSSCH
T ss_pred HHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHH---HHHHhcCCCCH
Confidence 9999999999999987 54431 111112 2223345899999999999999999999888762 33445678899
Q ss_pred HHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHhhhcCCc-eEeeeeceeEEEEEecCCCcCchhhcccc
Q 011856 352 LAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 352 ~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
+++.++.++|+.+.+ ++..++++++.+++.+.|++... ++. ...+..|.++++.+.... +
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~p~~g~~~~~~~~~~~----------~ 365 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLT--GLAEWHVPAAGMFLWIKVKGIN----------D 365 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSEEECCCSBSSEEEEEETTCS----------C
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCeEEeCCCceEEEEEEeCCCC----------C
Confidence 999999999876421 23334445555555555554311 221 122456778888884311 1
Q ss_pred hHHHHH-HHHHHHHCCeEeccCC---------CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 424 TTKFAR-FYRGMLEEGVYFAPSQ---------FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 424 ~~~~~~-~~~~l~~~Gv~~~~~~---------~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
. .+ +.+.|.++||.+.|+. ...+|+++. .+++++++++++|++++++.
T Consensus 366 ~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 366 V---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp C---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 23 4677889999998752 245788876 79999999999999998764
No 111
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=1.3e-25 Score=224.76 Aligned_cols=329 Identities=15% Similarity=0.131 Sum_probs=223.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---CCC------CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG------APCLLENVLAEMVISAVPS--IEMVRFVNSGT 165 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~~~------~~~~~~~~la~~l~~~~~~--~e~v~~~~sGs 165 (476)
+|+.+++|..+. .++.+|.+.+++.+++++.. +.+ .+.+...++++.++++++. .++++|++||+
T Consensus 20 ~g~~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAA----SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTT----CCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc----cCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 455555444431 24678999999999998742 111 1245567899999999864 58999999999
Q ss_pred HHHHHHHHHHHh--ccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHH
Q 011856 166 EACMGVLRLARA--FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240 (476)
Q Consensus 166 eA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 240 (476)
+|++.+++.++. ..++++|++.+++||+..... ....|..+...+.... + ..|+++|++.+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-------------~~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-G-------------TLQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-S-------------CBCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-C-------------CcCHHHHHHHh
Confidence 999999997532 456788999999999865432 2233443332221110 0 12788999988
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC
Q 011856 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (476)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~ 318 (476)
++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.... ......+ .+|++ +++|.+|.
T Consensus 162 ~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~~--~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 162 DE---KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQAL--DCDFYVFSGHKLYGP 230 (406)
T ss_dssp CT---TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHH--TCSEEEEEGGGTTSC
T ss_pred cc---CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCccccc--CCCEEEEEchhccCC
Confidence 63 6889999999999999998 99999999999999999999964321 1111222 46765 69999962
Q ss_pred -CCcEEEEEecHHHHHhhcCCCCcc------------------ccCCCCCcHHHHHHHH-HHHHHhcC---CCHHHHHHH
Q 011856 319 -GLPVGAYGGRRDIMEMVAPAGPMY------------------QAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNK 375 (476)
Q Consensus 319 -G~~iG~~~~~~~i~~~l~~~~~~~------------------~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~ 375 (476)
| +|++++++++++.+.+..... ...+.+.+++.+.+++ ++++.+.+ +++.+++++
T Consensus 231 ~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 TG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp TT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 899999999998886421100 0111234556666555 77877653 356667777
Q ss_pred HHHHHHHHHHHHhhhcCCceEeee--eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 445 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------- 445 (476)
+.+++.+.|+++ +....... .|.++.+.+... + ..++.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~ 370 (406)
T 1kmj_A 309 LMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH-----------H---AYDVGSFLDNYGIAVRTGHHCAMPLMA 370 (406)
T ss_dssp HHHHHHHHHTTS----TTEEEESCTTCCSEEEEEETTC-----------C---HHHHHHHHHHTTEECEEECTTCHHHHH
T ss_pred HHHHHHHHHhcC----CCeEEecCCCcCCEEEEEECCC-----------C---HHHHHHHHhhCCcEEEeccccchHHHH
Confidence 777777777653 21112233 577877776310 1 2467788899999998753
Q ss_pred ----CcceEEeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 446 ----FEAGFTSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ----~~~~~~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++. +|++|+++++++|+++++.+
T Consensus 371 ~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 371 YYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 245777654 59999999999999998754
No 112
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.7e-26 Score=230.09 Aligned_cols=315 Identities=14% Similarity=0.060 Sum_probs=214.0
Q ss_pred CcHHHHHHHHHHHHhcCC-C-CC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-----------c
Q 011856 116 ADDQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-~-~~--~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-----------~ 179 (476)
.+|++.+++.+++.+... + .+ ..+...++++++++.++ ..+++++++||++|++.+++.++.. +
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 578999999998876321 1 11 24566789999999987 5779999999999999999977543 2
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
+++.|++.+++|+++ ...+...|..+...+...... -|+++|++.++++ ++++|+++++++++
T Consensus 122 ~gd~vl~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSF-EKGREMMDLEYIYAPIKEDYT--------------IDEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHH-HHHHHHHTCEEEEECBCTTSS--------------BCHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHH-HHHHHHcCceeEEEeeCCCCc--------------CCHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 366777777777764 344444454333222111000 1899999999863 46677777777888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--ccc---------cchhhccCCCCchhhhhhhcCCCCcEEEEEe
Q 011856 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (476)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~---------~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~ 327 (476)
|.+.+ +++|.++|++||++||+||+|+++ . .+. .+.... ++...+.+++|.+++|+++|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 98888 999999999999999999999865 2 221 222233 555555678999888889999977
Q ss_pred cHH-HHHhhcCCCCccc--------cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 328 RRD-IMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 328 ~~~-i~~~l~~~~~~~~--------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
+++ +.+.+....+... +++.+.+++++.++++.+....-++..++++++.+++.+.|+++ .+... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKPV--IE 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCBS--SC
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEE--cC
Confidence 554 5554432111111 12223356666666666543322567788888888888888876 22211 22
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-cceEEeC--CCcHHHHHHHHHHHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSL--AHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~~~--~~t~e~i~~~~~~l~~~~~ 472 (476)
..+.++++.+.+ ..++.+.|.++||++.++.. ..+|+++ .+|++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDED----------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECTT----------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeCC----------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 445666655421 25788899999999988763 5677764 4799999999999998764
No 113
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=3.7e-27 Score=237.10 Aligned_cols=336 Identities=15% Similarity=0.100 Sum_probs=211.9
Q ss_pred CEEEecccChhhccCCCC--cHHHHHHHHHHHHhc------CCCCCC---CHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011856 99 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFGAP---CLLENVLAEMVISAVP---SIEMVRFVNSG 164 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~~------~~~~~~---~~~~~~la~~l~~~~~---~~e~v~~~~sG 164 (476)
..++||..+ .+-... .+.+.+++.+.+.+. ..|+.+ .++++++++++.+.++ .+++|++|+||
T Consensus 31 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGG---NPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCC---CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCc---CCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 346777776 222211 134555555554332 123222 2555666666654432 57899999999
Q ss_pred HHHHHHHHHHHHhccCCc-----eEEEE-eCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC------C
Q 011856 165 TEACMGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------D 232 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~-----~ii~~-~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d 232 (476)
++|++.+++... ..++ +|++. +++||++.......... ......+..++.+ |
T Consensus 108 t~al~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d 171 (417)
T 3g7q_A 108 QSAFFYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLF--------------VSARPNIELLPEGQFKYHVD 171 (417)
T ss_dssp HHHHHHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCE--------------EECCCEEEEEGGGEEEEECC
T ss_pred HHHHHHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhh--------------ccccCcccccCCcccccccC
Confidence 999999999642 2222 77776 88888854433211000 0000112222211 6
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccc-h--hhccCCCCch
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-A--QEYFGVTPDL 309 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~-~--~~~~g~~pDi 309 (476)
+++|+ +. +++++|+++..+|++|.+.+.++ +++|.++|++||++||+||+|..+..+..+ . ....+....+
T Consensus 172 ~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~-~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 172 FEHLH--IG---EETGMICVSRPTNPTGNVITDEE-LMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GGGCC--CC---TTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEE
T ss_pred HHHhc--cc---cCceEEEECCCCCCCCCccCHHH-HHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEE
Confidence 77776 32 36778887777778888776555 999999999999999999999644211110 0 0111222235
Q ss_pred hhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 310 ~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L 384 (476)
.++||...+|+|+||+++++++++.+. ...+..+++.++++++++.+.++...- +.+.++++++.+.+.+.|
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIA---NMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHH---HHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHH---HhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589995447999999999999998886 233455677889999998888863211 124455666777777777
Q ss_pred HHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------------CcceEE
Q 011856 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEAGFT 451 (476)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------~~~~~~ 451 (476)
.+.....++....+..|.++++.+..... ...++.+.|.++||++.++. ...+|+
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRi 390 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPI------------TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRM 390 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSS------------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEE
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCC------------CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEE
Confidence 76544334444445667888887743111 12567888899999998753 235788
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 452 SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++..+++++++++++|+++++++
T Consensus 391 s~~~~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 391 NYVPEPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp ESCSCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998765
No 114
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=6.2e-26 Score=228.06 Aligned_cols=324 Identities=13% Similarity=0.046 Sum_probs=227.9
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA--------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~--------~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
+|..|+|+.+. |+.++.|.+++.+++.+...... ..+...++.++++++++ ..++++|++||+++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46788887543 46789999999999976321110 12556789999999986 46799999999999
Q ss_pred HHHHHHHHHhc----cCCceEEEEeCCCCCCchhHHhh----c--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHH
Q 011856 168 CMGVLRLARAF----TGRERIIKFEGCYHGHADPFLVK----A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (476)
Q Consensus 168 ~~~al~~ar~~----~~~~~ii~~~~~yhg~~~~~~~~----~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 237 (476)
++.+++.++.+ .+++++|+.++.+|+.+...+.. . |. .++.++. +++|+
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~--~~~l~ 159 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-------------------TLRLVDS--PEELP 159 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-------------------EEEEESS--GGGHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-------------------eEEEeCc--HHHHH
Confidence 99999865433 45566788888888854433211 1 22 2344444 67888
Q ss_pred HHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhh
Q 011856 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKI 315 (476)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~ 315 (476)
+.+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.-... .....+ .+|+++ ++|.
T Consensus 160 ~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~~--~~d~~~~s~~K~ 228 (416)
T 1qz9_A 160 QAIDQ---DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGAVP--VDLHQA--GADYAIGCTYKY 228 (416)
T ss_dssp HHCST---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCHHHH--TCSEEEECSSST
T ss_pred HHhCC---CceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEccccccCcC--CChhhc--CCCEEEecCccc
Confidence 88863 6889999999999999988 999999999999999999999621111 112222 367764 5699
Q ss_pred cCCCCcE-EEEEecHHHHHhhcCCCCc--------------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHH
Q 011856 316 IGGGLPV-GAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYE 371 (476)
Q Consensus 316 lg~G~~i-G~~~~~~~i~~~l~~~~~~--------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~ 371 (476)
+++|.++ |++++++++++.+.+.... ......+.++.+++++.++|+.+.+ +++.+
T Consensus 229 l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 308 (416)
T 1qz9_A 229 LNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR 308 (416)
T ss_dssp TCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888888 9999999987766532111 0112234678888888889988764 45778
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceEee----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc
Q 011856 372 YLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 447 (476)
+++++.+++.+.|+++....++..... ..+.++++.+.+ ..++.+.|.++||++......
T Consensus 309 ~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~l~~~gi~~~~~~~~ 372 (416)
T 1qz9_A 309 KSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE----------------GYAVIQALIDRGVIGDYREPR 372 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----------------HHHHHHHHHTTTEECEEETTT
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC----------------HHHHHHHHHhCCcEeccCCCC
Confidence 888888999988887522102211111 135666666521 257888899999998765556
Q ss_pred ceEEeCC---CcHHHHHHHHHHHHHHHHHh
Q 011856 448 AGFTSLA---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 448 ~~~~~~~---~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+|+++. +|++|+++++++|++++++.
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 7888754 59999999999999998753
No 115
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=2.5e-27 Score=238.91 Aligned_cols=339 Identities=11% Similarity=0.040 Sum_probs=219.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHH--HHHHhcC-CCCC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH--HHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALG--ETMKKGT-SFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~--~~l~~~~-~~~~--~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~--~al 172 (476)
.+||..|.....+...++.+.+++. +.+..+. ...| +.....+|.+.++++++ .+++|++++|+++++. .++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 106 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLT 106 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHH
Confidence 3666666322111334556777775 3333221 1223 33344677888888776 5789999999999997 777
Q ss_pred HHHHhc-cC--------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 173 RLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 173 ~~ar~~-~~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
+..... .+ ++.|++.+++|+++...+ ...|..+...+... .+ -|+++|++.+++.
T Consensus 107 ~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~~ 170 (423)
T 3ez1_A 107 FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL-QTLGFELLTVDMQS-DG--------------PDVDAVERLAGTD 170 (423)
T ss_dssp HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TE--------------ECHHHHHHHHHSC
T ss_pred HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH-HHcCCEEEeccCCC-CC--------------CCHHHHHHHHhhC
Confidence 743221 23 578999999998865443 33344322211100 01 1899999999632
Q ss_pred CCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCc-ccc--ccc---hhh------ccCCCCch
Q 011856 244 KGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGF-RLA--YGG---AQE------YFGVTPDL 309 (476)
Q Consensus 244 ~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~-r~g--~~~---~~~------~~g~~pDi 309 (476)
+++++|+++|. +|++|.+.+.++ +++|.++| ++||++||+||+|..+ ..+ ... ... ..+....+
T Consensus 171 -~~~~~v~~~~~~~NPtG~~~~~~~-l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 171 -PSVKGILFVPTYSNPGGETISLEK-ARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp -TTEEEEEECSSSCTTTCCCCCHHH-HHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred -CCceEEEECCCCCCCCCcCCCHHH-HHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 36888888764 455787776555 99999999 9999999999999843 221 111 111 12222335
Q ss_pred hhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-hcC-----CCHHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE-----PGTYEYLNKITGELTQG 383 (476)
Q Consensus 310 ~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~-----~~~~~~~~~~~~~l~~~ 383 (476)
.+|||.+.+|+|+||+++++++++.+. ......+++.+++.+.++.++|+. ... .+..+.++++.+.+.+.
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLS---KYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHH---HHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999668999999999999998886 333455778899999999888875 111 22333344445555555
Q ss_pred HHHHhhhcC--CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEE
Q 011856 384 IIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT 451 (476)
Q Consensus 384 L~~~~~~~~--~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~ 451 (476)
|.+.....+ +....+..|.++++.+... ....+.+.|.++||++.+++ ...+|+
T Consensus 326 l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRi 391 (423)
T 3ez1_A 326 LRAELGEGGEYATWTLPKGGYFISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRL 391 (423)
T ss_dssp HHHHHTTTTSSEEECCCSBSSCEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEE
T ss_pred HHHhcCcCCCceEEeCCCccEEEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEE
Confidence 555433333 2222345678888887431 12567788899999999832 245788
Q ss_pred eCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 452 SLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
++.. +++++++++++|+++++++
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 392 APTRPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHH
Confidence 7664 9999999999999998764
No 116
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=1.5e-26 Score=232.42 Aligned_cols=335 Identities=11% Similarity=0.074 Sum_probs=214.7
Q ss_pred CCEEEecccChhhccCCC--CcHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCCCCC---eEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l~~~-~~~~---~~~~~~~~la~~l~~~~~~~e---~v~~~~sGseA~ 168 (476)
|+.+|||..|....+-|+ .++.+.+++.+....+ ..|. +..++++++++++.... +.+ ++++++||++|+
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~-~~~~~~~i~~t~g~~~al 114 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPY-KPEGYISAIATPGGTGAI 114 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhccc-CccccCcEEEcCccHHHH
Confidence 456778777732222222 5678888876643321 1222 23567778888776655 234 999999999999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC--CCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~ 246 (476)
..+++.. ...++.|++.+++|+++.. .+...|..+...+.....+ ..|+++|++.+++. ++.
T Consensus 115 ~~~~~~~--~~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~l~~~~~~~~ 178 (413)
T 3t18_A 115 RSAIFSY--LDEGDPLICHDYYWAPYRK-ICEEFGRNFKTFEFFTDDF-------------AFNIDVYKEAIDEGIRDSD 178 (413)
T ss_dssp HHHHHHH--CCSSCEEEEESSCCTHHHH-HHHHHTCEEEEECCBCTTS-------------SBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHh--cCCCCEEEECCCCcccHHH-HHHHhCCeEEEeeccCCCC-------------CcCHHHHHHHHHHHhhcCC
Confidence 9999942 3456788888888877543 3444555443322211110 11899999998741 124
Q ss_pred eEEEEEccc-CCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCc-ccccc---chhhccCCCCc---hh--
Q 011856 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAYG---GAQEYFGVTPD---LT-- 310 (476)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~-r~g~~---~~~~~~g~~pD---i~-- 310 (476)
.++++++++ +|++|.+.+.++ +++|.++|+ +||++||+||+|.+| +.+.. +.....++.+| ++
T Consensus 179 ~~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (413)
T 3t18_A 179 RIASLINSPGNNPTGYSLSDEE-WDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAF 257 (413)
T ss_dssp EEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEE
Confidence 446777654 778888877655 999999999 899999999999988 66532 22223344555 22
Q ss_pred hhhhhcC-CCCcEEEEEe---cHHHHHhhcCCCCccc-cCCCCCcHHHHHHHHHHHHHhc------C-CCHHHHHHHHHH
Q 011856 311 TLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRLK------E-PGTYEYLNKITG 378 (476)
Q Consensus 311 t~sK~lg-~G~~iG~~~~---~~~i~~~l~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~------~-~~~~~~~~~~~~ 378 (476)
++||.++ +|+|+||+++ ++++++.+........ ..+.+.+++++.++.++|+... . +++.++++++.+
T Consensus 258 S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 337 (413)
T 3t18_A 258 SMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRAD 337 (413)
T ss_dssp EHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999 8999999998 8999888763111111 1223578888888877764321 1 344566666777
Q ss_pred HHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcH
Q 011856 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSS 457 (476)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~ 457 (476)
++.+.|+++ ++....+..|.++++.+. + ..++.+.|.++||++.++ ...+|+++. .++
T Consensus 338 ~l~~~l~~~----g~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gv~v~~g-~~~iRis~~~~~~ 396 (413)
T 3t18_A 338 VFVTAAKEN----KLTMIPYFGGFFTFIPTD-------------K---AFDIVKDLEKENIFTIPS-AKGIRVAICGVGE 396 (413)
T ss_dssp HHHHHHHHT----TCCCBCCCSSSCEEEECS-------------C---HHHHHHHHHHTTEECEEC-SSEEEECTTTSCG
T ss_pred HHHHHHHHc----CCCccCCCceEEEEeCCC-------------C---HHHHHHHHHhCCEEEecC-CCceEEEEeeCCH
Confidence 777777664 222222233444554431 1 256778889999999987 356888765 366
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011856 458 DDIQHTITAAEKVKMRF 474 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~~ 474 (476)
+++ +++|.++++++
T Consensus 397 ~~~---l~~l~~~l~~~ 410 (413)
T 3t18_A 397 EKI---PKLVQRLAFYT 410 (413)
T ss_dssp GGH---HHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHH
Confidence 665 78888877664
No 117
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.95 E-value=1.3e-26 Score=235.27 Aligned_cols=305 Identities=17% Similarity=0.126 Sum_probs=200.5
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhccCC-c--------------eEEEE-eCCCCCCchhH
Q 011856 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGR-E--------------RIIKF-EGCYHGHADPF 198 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~~~~-~--------------~ii~~-~~~yhg~~~~~ 198 (476)
.+++.++++++.+.++ ++++|+||+||++|++.+++. +.++ + .||+. +++|+++....
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~---l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNL---FGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH---SSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHH---HhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 3566677777755432 578999999999999999995 3332 2 46654 77888754321
Q ss_pred HhhcCCCCccCCCCCCCCCCCCCCCceeeccC----------CCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPF----------NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 199 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
... .........++.++. -|+++|++.+++..+++++|+++..+|++|.+.+.++
T Consensus 163 ~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~- 227 (444)
T 3if2_A 163 VEG--------------QHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEE- 227 (444)
T ss_dssp SSS--------------CCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHH-
T ss_pred ccc--------------chhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHH-
Confidence 100 000000111222221 2899999875321236777777656677888776554
Q ss_pred HHHHHHHHHHhCCEEEEeccccCccccccc---hhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccC
Q 011856 269 LNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~r~g~~~---~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~ 345 (476)
+++|.++|++||++||+||+|..+..+..+ .....+...++.++||...+|+|+||+++++++++.+.. ..+..
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~ 304 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSA---MNAVV 304 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHH---HHHhc
Confidence 999999999999999999999643111110 001123333456899985578999999999999988762 33444
Q ss_pred CCCCcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhc
Q 011856 346 TLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (476)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (476)
+++.+++.++++.+.++.... +.+.++++++.+.+.+.|.+.....++....+..|.++++.+.....
T Consensus 305 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------- 377 (444)
T 3if2_A 305 NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI------- 377 (444)
T ss_dssp HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-------
T ss_pred cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC-------
Confidence 667788999888888763211 12455566666777777766543333333334667888888753111
Q ss_pred ccchHHHHHHHHHHHHCCeEeccCCC--------------cceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 421 KSETTKFARFYRGMLEEGVYFAPSQF--------------EAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~~~~~~~--------------~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
...++.+.|.++||++.++.. ..+|+++..++++|++++++|+++++++.
T Consensus 378 -----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 378 -----STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp -----CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 125678888999999987632 25788887799999999999999998764
No 118
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=6.2e-27 Score=228.60 Aligned_cols=307 Identities=11% Similarity=0.061 Sum_probs=202.7
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~al~~ 174 (476)
++++||.++. +.++ .+|++.+++.+++.+....+|+.....++.+.++++++ ..+++++++||++++..+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 4678988874 3355 68999999999873311122333224556666666553 467999999999999999994
Q ss_pred HHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE-Ec
Q 011856 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LE 253 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi-~e 253 (476)
+ ++.|++. ++||++...+ ...|..+...+.....++ |+++| +++++|+ ++
T Consensus 96 ---~--gd~Vl~~-p~y~~~~~~~-~~~g~~~~~v~~~~~~~~--------------d~~~l--------~~~~~v~l~~ 146 (335)
T 1uu1_A 96 ---F--DRSVFFP-PTYSCYRIFA-KAVGAKFLEVPLTKDLRI--------------PEVNV--------GEGDVVFIPN 146 (335)
T ss_dssp ---S--SEEEECS-SSCHHHHHHH-HHHTCEEEECCCCTTSCC--------------CCCCC--------CTTEEEEEES
T ss_pred ---h--CCcEEEC-CCcHHHHHHH-HHcCCeEEEeccCCCCCC--------------CHHHc--------CCCCEEEEeC
Confidence 3 5788888 9998865433 344543333221100010 33333 1456666 55
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccch-hhccCCCCchhhhhhhcC-CCCcEEEEEecHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 330 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~ 330 (476)
| +|++|.+.+ .+++.++++.+| ++|+||+|++| +. .... .+..+....+.++||.+| +|+|+||++++++
T Consensus 147 p-~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 219 (335)
T 1uu1_A 147 P-NNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEK 219 (335)
T ss_dssp S-CTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHH
T ss_pred C-CCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHH
Confidence 5 667888877 445555555558 99999999877 42 1111 122222233458999999 8999999999999
Q ss_pred HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEe
Q 011856 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (476)
Q Consensus 331 i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (476)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.+.
T Consensus 220 ~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~ 289 (335)
T 1uu1_A 220 FIDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYR-ITDSRGNFVFVFME 289 (335)
T ss_dssp HHHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCCCCSSEEEEECC
T ss_pred HHHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcE-EcCCCCeEEEEECC
Confidence 98887631 13468899999999999875321 456677777778888777765 221 12455777776653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~ 470 (476)
. ....++.+.|+++||++.+. ...+|+++.. ++++++++++|+++
T Consensus 290 ~--------------~~~~~~~~~l~~~gi~v~~~-~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 290 K--------------EEKERLLEHLRTKNVAVRSF-REGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp T--------------HHHHHHHHHHHHHTEEEEEE-TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred C--------------CCHHHHHHHHHHCCEEEEEC-CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 1 12357888899999999983 4568888764 67899999998764
No 119
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=2.2e-26 Score=229.08 Aligned_cols=320 Identities=13% Similarity=0.112 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHHHHhcC---CC---CCCC--HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCce
Q 011856 113 IGHADDQVLAALGETMKKGT---SF---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~---~~---~~~~--~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.|+.++.+.+++.+++.+.. .+ .++. +...++.+.++++++ ..+++++++||++|++.+++.++ ..++++
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd~ 103 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGDE 103 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTCE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCCE
Confidence 57788999999999987632 11 2232 567889999999986 45699999999999999999642 356688
Q ss_pred EEEEeCCCCCCchhH---HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 184 IIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
|++.+++||+..... ....|..+...+.....+. ..|+++|++.+++ ++++|+++++++++|
T Consensus 104 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~~---~~~~v~~~~~~nptG 168 (390)
T 1elu_A 104 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLGP---KTRLVILSHLLWNTG 168 (390)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCCT---TEEEEEEESBCTTTC
T ss_pred EEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcCC---CceEEEEeccccCCc
Confidence 999999999865432 2233443332221100000 0268888888763 688999999999999
Q ss_pred cccCCHHHHHHHHHHHH----HhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHHHHHh
Q 011856 261 FIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~i~~~ 334 (476)
.+.+ +++|.++|+ +||++||+||+|+..... .+.....+|+++ ++|.+.+|.++|++++++++++.
T Consensus 169 ~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~----~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~ 240 (390)
T 1elu_A 169 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP----LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGE 240 (390)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC----CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGG
T ss_pred eecC----HHHHHHHHhhhhhhcCcEEEEEcccccCCcC----CChhhcCCCEEEccccccccCCCceEEEEECHHhHhh
Confidence 9998 999999999 999999999999621211 111123467764 89977777889999999998887
Q ss_pred hcCCCCc-------------------cccCCCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhc
Q 011856 335 VAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKA 391 (476)
Q Consensus 335 l~~~~~~-------------------~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~ 391 (476)
+.+.... ....+.+.++++++++.++++.+.+. +..++++++.+++.+.|+++. ..
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~ 319 (390)
T 1elu_A 241 INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLP-HV 319 (390)
T ss_dssp CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHST-TE
T ss_pred cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 7642100 01223355778888888888876543 356666777777777776631 11
Q ss_pred CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEe--CCCcHHHHHHHHHHHH
Q 011856 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
.+....++.|.++.+.+.... ...++.+.|.++||++.++. ...+|++ ..++++++++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 320 HCLATSAPQAGLVSFTVDSPL-------------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp EESCSSCCSSSEEEEEECSSS-------------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred EEecCccccccEEEEEcCCCC-------------CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHH
Confidence 111101356788888773210 12567888899999998874 4567886 4589999999999987
Q ss_pred HH
Q 011856 469 KV 470 (476)
Q Consensus 469 ~~ 470 (476)
++
T Consensus 387 ~~ 388 (390)
T 1elu_A 387 DF 388 (390)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 120
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.8e-26 Score=226.36 Aligned_cols=328 Identities=13% Similarity=0.062 Sum_probs=226.2
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLA 175 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~a 175 (476)
+.|+|..+. ++.++++.+++.+++.. +++. ..+...+++++++++++. .+++++++||++|++.+++..
T Consensus 20 ~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l 91 (386)
T 2dr1_A 20 KYKLFTAGP------VACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG 91 (386)
T ss_dssp CSEECCSSS------CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred cceeecCCC------cCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence 356665332 45688999888766542 2211 146778899999988763 467999999999999999953
Q ss_pred HhccCCceEEEEeCCCCCC-chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 176 RAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
..++++|++.+++||+. ....+...|..+...+... .+ ..|+++|++.+++. +++++|++++
T Consensus 92 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~ 154 (386)
T 2dr1_A 92 --VSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GK-------------AVKPEDLDDALRKN-PDVEAVTITY 154 (386)
T ss_dssp --SCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHC-TTCCEEEEES
T ss_pred --hcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEEe
Confidence 34667899999999883 2223333344332221111 00 13899999999642 2578888888
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~ 332 (476)
+++++|.+.+ +++|.++|++||++||+||+|+.+... ..... ..+|++ +++|.++++.++|+++++++++
T Consensus 155 ~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~~--~~~~~--~~~di~~~s~sK~~~~~~g~G~~~~~~~~~ 226 (386)
T 2dr1_A 155 NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGGAD--IKFDK--WGLDVVFSSSQKAFGVPPGLAIGAFSERFL 226 (386)
T ss_dssp EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTTBC--CCTTT--TTCSEEEEETTSTTCCCSSCEEEEECHHHH
T ss_pred ecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccCcc--ccccc--cCCcEEEEeccccccCCCceEEEEECHHHH
Confidence 8888999988 999999999999999999999643111 11122 235776 4669999655699999999998
Q ss_pred HhhcCCC-------------Cc--cccCCCCCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 333 EMVAPAG-------------PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 333 ~~l~~~~-------------~~--~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
+.+.+.. .. ....+++.++++++++.++|+.+.+. +..++++++.+++.+.|+++ ...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 304 (386)
T 2dr1_A 227 EIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDI 304 (386)
T ss_dssp HHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 8774210 00 12335577889999999999876543 57778888888888888875 2222
Q ss_pred ceE-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCC--CcHHHHHHHHHH
Q 011856 394 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITA 466 (476)
Q Consensus 394 ~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~--~t~e~i~~~~~~ 466 (476)
... ....+.++++.+... ....++.+.|+++||.+.++. ...+|+++. ++++++++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 371 (386)
T 2dr1_A 305 LAEPGHESPTITAVLTPPG-------------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371 (386)
T ss_dssp SSCTTCBCSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHH
T ss_pred CcCccccCCceEEEEcCCC-------------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 111 011467777776421 012578889999999998863 346788766 799999999999
Q ss_pred HHHHHHHh
Q 011856 467 AEKVKMRF 474 (476)
Q Consensus 467 l~~~~~~~ 474 (476)
|+++++++
T Consensus 372 l~~~~~~~ 379 (386)
T 2dr1_A 372 LREVINEL 379 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998764
No 121
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.94 E-value=1.2e-24 Score=218.61 Aligned_cols=332 Identities=14% Similarity=0.122 Sum_probs=226.7
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC---C---CCCC---CHHHHHHHHHHHhhCCC--CCeEEEeCCH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---S---FGAP---CLLENVLAEMVISAVPS--IEMVRFVNSG 164 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~---~---~~~~---~~~~~~la~~l~~~~~~--~e~v~~~~sG 164 (476)
.+|+.+++|..+. + ++.++.+.+++.+++++.. + +.+. .+...++.+.++++++. .+++++++||
T Consensus 24 ~~g~~~i~l~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAA---T-SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTT---C-CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCc---c-CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 4677788887763 2 4678999999999988621 1 1121 24567889999999853 4899999999
Q ss_pred HHHHHHHHHHHHh--ccCCceEEEEeCCCCCCch---hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHH
Q 011856 165 TEACMGVLRLARA--FTGRERIIKFEGCYHGHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (476)
Q Consensus 165 seA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 239 (476)
++|++.+++.++. ..++++|++.+++||+... ......|..+...+... .+ ..|+++|++.
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~ 165 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QE-------------SFDLEHFKTL 165 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TS-------------SBCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CC-------------CcCHHHHHHh
Confidence 9999999997521 4566789999999999642 22223444333222110 00 0279999999
Q ss_pred HhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcC
Q 011856 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG 317 (476)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg 317 (476)
+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+..... .....++ +|++ +++|.++
T Consensus 166 l~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~~--~~~~~~~--~di~~~s~sK~~~ 234 (420)
T 1t3i_A 166 LSE---KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHYP--LDVQLID--CDWLVASGHKMCA 234 (420)
T ss_dssp CCT---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTSC--CCHHHHT--CSEEEEEGGGTTS
T ss_pred hCC---CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCcc--CchhhcC--CCEEEEehhhhcC
Confidence 863 6889999999999999998 999999999999999999999633211 1122233 6776 4669776
Q ss_pred CCCcEEEEEecHHHHHhhcCCCCcc-----------------ccCCCCCcHHHHHHHHH-HHHHhcC---CCHHHHHHHH
Q 011856 318 GGLPVGAYGGRRDIMEMVAPAGPMY-----------------QAGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKI 376 (476)
Q Consensus 318 ~G~~iG~~~~~~~i~~~l~~~~~~~-----------------~~~t~~~~~~~~aaa~a-al~~~~~---~~~~~~~~~~ 376 (476)
+ ..+|++++++++++.+.+..... ...+.+.+++.+.+++. +++.+.+ +++.++++++
T Consensus 235 ~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 23999999999998886421110 00123456666666555 6776653 4566777777
Q ss_pred HHHHHHHHHHHhhhcCCceEee-----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------
Q 011856 377 TGELTQGIIDAGKKAGHAICGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------ 445 (476)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------ 445 (476)
.+++.+.|+++. ++..... +.|.++.+.+... + ..++.+.|.++||.+.++.
T Consensus 314 ~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 314 THYLWQGLGQIP---QLRLYGPNPKHGDRAALASFNVAGL-----------H---ASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHHTCT---TEEEESCCGGGSCBCSEEEEEETTB-----------C---HHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHHhCC---CeEEeCCCccccccCCEEEEEECCC-----------C---HHHHHHHHHHCCeEEeeccccchHH
Confidence 888887776631 2211111 2377877776310 1 2467788889999998872
Q ss_pred ------CcceEEeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 446 ------FEAGFTSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ------~~~~~~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++. ++++++++++++|+++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 346788765 59999999999999998764
No 122
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.94 E-value=2.6e-25 Score=220.78 Aligned_cols=323 Identities=17% Similarity=0.202 Sum_probs=218.6
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC--C-C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--G-A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 170 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~--~-~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~ 170 (476)
.|+|+.++ ++.+|+|.+++.+++++.... . + ..+...++.++++++++ ..+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 56776654 468999999999999863111 0 1 12445788888888886 45799999999999999
Q ss_pred HHHHHHh--ccCCceEEEEeCCCCCCchhHH--hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 171 VLRLARA--FTGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 171 al~~ar~--~~~~~~ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
+++.++. ..+++.|++.+++||+...... ...|..+...+... .+ ..|+++|++.+++ +
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~ 139 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RG-------------VVKLEELEKLVDE---D 139 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TS-------------CBCHHHHHHHCCT---T
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CC-------------ccCHHHHHHHhCC---C
Confidence 9997542 1456788888888887644432 33344333222110 01 1279999999864 6
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCc-cccccchhhccCCCCchhh--hhhhcCC-CC
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGG-GL 320 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~-G~ 320 (476)
+++|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ | ... .... ...+|+++ ++|.++. |
T Consensus 140 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~sK~~g~~G- 209 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGPKG- 209 (384)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSCTT-
T ss_pred CeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEEEecHHHhcCCCc-
Confidence 888888888888999998 899999999999 9999999996 4 211 1111 22467775 5598773 5
Q ss_pred cEEEEEecHHH--HHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 321 PVGAYGGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 321 ~iG~~~~~~~i--~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
+|++++++++ ...+..........+++.++++++++.++|+.+.+ ++..++++++.+++.+.|++. ++...
T Consensus 210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 284 (384)
T 1eg5_A 210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL----GAHII 284 (384)
T ss_dssp -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT----TCEEC
T ss_pred -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC----CeEEe
Confidence 7999999876 22221100001124567789999999999987543 566777778888888877652 22111
Q ss_pred ee---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceE
Q 011856 397 GG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGF 450 (476)
Q Consensus 397 v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~ 450 (476)
.. ..+.++.+.+.+. + ..++.+.|.++||.+.++. ...+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLSVSFPNI-----------R---GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEEEECTTC-----------C---HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEEEEeCCC-----------C---HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 11 1344555555310 1 2567888899999998742 13568
Q ss_pred EeCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 451 TSLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 451 ~~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++. ++++|+++++++|+++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8766 79999999999999998764
No 123
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.94 E-value=1.3e-26 Score=233.66 Aligned_cols=337 Identities=11% Similarity=0.040 Sum_probs=215.8
Q ss_pred EEecccChhhcc-CCCCcHHHHHHHHHHH--Hhc-CCCCCCC-HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHH
Q 011856 101 YIDYVGSWGPAI-IGHADDQVLAALGETM--KKG-TSFGAPC-LLENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVL 172 (476)
Q Consensus 101 ~iD~~~~~~~~~-lG~~~p~v~~a~~~~l--~~~-~~~~~~~-~~~~~la~~l~~~~~-~~e~v~~~~sGseA~--~~al 172 (476)
+|||..|..... ++ .++.+.+++.+++ ..+ ..++|+. ....+|.+.++++++ .+++|++++|+++++ ..++
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~ 112 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLIS 112 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHH
Confidence 578877742100 22 3456777776553 122 1223332 224556666666655 568999999999997 5555
Q ss_pred HHHHhc--cC--------CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 173 RLARAF--TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 173 ~~ar~~--~~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
+....- .+ ++.|++.+++|+++...+ ...|..+...+... .+ .|+++|++.+++
T Consensus 113 ~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~ 176 (422)
T 3d6k_A 113 WSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT-EHFGFEMINVPMTD-EG--------------PDMGVVRELVKD 176 (422)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TE--------------ECHHHHHHHHTS
T ss_pred HHhcCcccccccccccCCCCEEEEeCCccHHHHHHH-HHcCCEEEecCCCC-CC--------------CCHHHHHHHHhc
Confidence 643211 01 236999999999865443 33344322211100 01 279999999974
Q ss_pred CCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEecccc--Cc-ccccc-chh-------hccCCCCch
Q 011856 243 NKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMT--GF-RLAYG-GAQ-------EYFGVTPDL 309 (476)
Q Consensus 243 ~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~--g~-r~g~~-~~~-------~~~g~~pDi 309 (476)
. ++++|++.| .+|++|.+. +.+++++|.++|+ +||++||+||+|. +| +.+.. ... +..+....+
T Consensus 177 ~--~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (422)
T 3d6k_A 177 P--QVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFM 253 (422)
T ss_dssp T--TEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEE
T ss_pred C--CCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEE
Confidence 2 578877555 445577766 4556999999999 9999999999996 46 43321 111 122334445
Q ss_pred hhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL---KE--PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 310 ~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L 384 (476)
.+|||..++|+|+||+++++++++.+.. .....+++.|++++.++.++|+.. .+ ++..++++++.+++.+.|
T Consensus 254 ~S~SK~~~~GlriG~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (422)
T 3d6k_A 254 SSTSKITHAGSGVSFFASSKENIEWYAS---HANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEIL 330 (422)
T ss_dssp EESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcCcccceEEEEeCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899996689999999999999988762 334446778999999988887531 11 223444555666666777
Q ss_pred HHHhhhcCCce-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeC
Q 011856 385 IDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL 453 (476)
Q Consensus 385 ~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~ 453 (476)
.+...+.+... ..+..|.++++.+... + ...+.+.|.++||++.+++ ...+|+++
T Consensus 331 ~~~l~~~~~~~~~~p~~g~~~~~~~~~~-----------~---~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 331 DSRLSEYGVAKWTSPTGGYFISVDVVPG-----------T---ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHGGGTCEEECCCSBSSCEEEEESTT-----------C---HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHhcCcCCceEEeCCCcceEEEEECCCC-----------C---HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 66544443222 2334677888887421 1 2456778889999999832 23578887
Q ss_pred C-CcHHHHHHHHHHHHHHHHHh
Q 011856 454 A-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 454 ~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
. .+++++++++++|+++++++
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 7 69999999999999998765
No 124
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.94 E-value=1e-26 Score=234.73 Aligned_cols=298 Identities=10% Similarity=0.009 Sum_probs=201.0
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHHHHHHhc-cC---------CceEEEEeCCCCCCchhHHhhcCCCCc
Q 011856 141 ENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-TG---------RERIIKFEGCYHGHADPFLVKAGSGVA 207 (476)
Q Consensus 141 ~~~la~~l~~~~~-~~e~v~~~~sGseA~--~~al~~ar~~-~~---------~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (476)
..+|.+.++++++ .+++|++++|+++++ +.+++..... .+ ++.|++.+++|+++... +...|..+.
T Consensus 80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~-~~~~g~~~~ 158 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI-TERFGFEMI 158 (427)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH-HHHTTCEEE
T ss_pred cHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHH-HHHcCCEEE
Confidence 3456666666555 568999999999999 5777743221 21 68899999999885443 333343322
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHH-HHhCCEEEE
Q 011856 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIF 285 (476)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~ 285 (476)
.++... .+ -|+++|++.++. +++++|+++|. +|++|.+.+.++ +++|.++| ++||++||+
T Consensus 159 ~v~~~~-~g--------------~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~-~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 159 SVPMNE-DG--------------PDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDV-AKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp EEEEET-TE--------------ECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHH-HHHHHHCCCSSTTCEEEE
T ss_pred EeCCCC-CC--------------CCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHH-HHHHHHHHhhcCCCEEEE
Confidence 211100 01 189999999953 36888888865 455788776555 99999999 999999999
Q ss_pred eccccCc-ccccc----chhh------ccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHH
Q 011856 286 DEVMTGF-RLAYG----GAQE------YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354 (476)
Q Consensus 286 DEv~~g~-r~g~~----~~~~------~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~ 354 (476)
||+|.++ ..+.. .... ..+....+.+|||.+++|+|+||+++++++++.+.. .....+++.+++.+
T Consensus 221 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~q 297 (427)
T 3ppl_A 221 DNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTG---HAGIRGIGPNKVNQ 297 (427)
T ss_dssp ECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHH
T ss_pred ECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHH---HhhcccCCCCHHHH
Confidence 9999885 22211 1111 223334456899996689999999999999888762 33445678889999
Q ss_pred HHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHH
Q 011856 355 TAGIHTLKRL---KE--PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (476)
Q Consensus 355 aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (476)
.++.++|+.. .+ .+..+.++++.+.+.+.|.+.....+ +....+..|.++++.+... ...
T Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~ 363 (427)
T 3ppl_A 298 LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--------------TAS 363 (427)
T ss_dssp HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--------------CHH
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--------------hHH
Confidence 8888777531 11 23444555566666666665433332 2222344677888887431 125
Q ss_pred HHHHHHHHCCeEeccCC----------CcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 429 RFYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 429 ~~~~~l~~~Gv~~~~~~----------~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+.|.++||++.+++ ...+|+++.. ++++|++++++|+++++++
T Consensus 364 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 364 RVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 67788999999999832 2457887666 8999999999999998764
No 125
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.94 E-value=5.2e-26 Score=226.89 Aligned_cols=323 Identities=15% Similarity=0.119 Sum_probs=221.8
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al~~ 174 (476)
++.|+|..+. ++.+|++.+++.+++.+ .++. ..+...+++++++++++ ..+ ++++++||++|++.+++.
T Consensus 33 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~ 104 (393)
T 1vjo_A 33 PSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN 104 (393)
T ss_dssp CCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred ccceeccCCC------CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHh
Confidence 4567774432 45789999998776543 2211 23567889999998876 456 899999999999999996
Q ss_pred HHhccCCceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 175 ARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
+ ..++++|++.+++||+.. ...+...|..+...+... .+ ..|+++|++.++++ ++++|+++
T Consensus 105 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~ 166 (393)
T 1vjo_A 105 A--VEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALV 166 (393)
T ss_dssp H--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEE
T ss_pred c--cCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEe
Confidence 4 456678999999998821 122233344332221111 00 13899999999752 46788888
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~ 330 (476)
++++++|.+.+ +++|.++|++||++||+||+|+ + ... . ......+|+++ ++|.++++.++|+++++++
T Consensus 167 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~--~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 167 HAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP--I--FLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC--C--CTTTTTCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred ccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC--C--cccccCccEEEEcCcccccCCCceEEEEECHH
Confidence 88888999988 8899999999999999999997 4 211 1 11233567774 5699986559999999999
Q ss_pred HHHhhcCC----CCccc------------cCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 331 IMEMVAPA----GPMYQ------------AGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 331 i~~~l~~~----~~~~~------------~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+++.+... ..... ..++ +.|+++++++.++|+.+.+ ++..++++++.+++.+.|+++ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 315 (393)
T 1vjo_A 238 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--G 315 (393)
T ss_dssp HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 98887421 11111 1233 6788999999999987643 467788888888898888875 2
Q ss_pred cCCceEeee--eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEe---CCCcHHHH
Q 011856 391 AGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDI 460 (476)
Q Consensus 391 ~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~---~~~t~e~i 460 (476)
..+... .+ .+.++++.+... ....++.+.|+++ ||.+.++. ...+|++ +..+++++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i 381 (393)
T 1vjo_A 316 LSLHVE-KEYRLPTLTTVCIPDG-------------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESV 381 (393)
T ss_dssp CCBSSC-GGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred CcccCC-ccccCCcEEEEEcCCC-------------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHH
Confidence 222111 11 234556655211 0125688889888 99998764 3467887 34578889
Q ss_pred HHHHHHHHHHH
Q 011856 461 QHTITAAEKVK 471 (476)
Q Consensus 461 ~~~~~~l~~~~ 471 (476)
++++++|++++
T Consensus 382 ~~~~~~l~~~l 392 (393)
T 1vjo_A 382 DQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 126
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=4.9e-26 Score=231.15 Aligned_cols=283 Identities=10% Similarity=0.038 Sum_probs=181.0
Q ss_pred CCeEEE--eCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCC-CCCCCCCCceeec
Q 011856 155 IEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSP-GVPKGATYETLTA 228 (476)
Q Consensus 155 ~e~v~~--~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 228 (476)
.++|++ |+||++|+..++.+...+.+++.|++.+++|+++...+.. ..|..+..+++.+.. +. .
T Consensus 117 ~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~---------~- 186 (448)
T 3meb_A 117 EGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGEL---------E- 186 (448)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCS---------S-
T ss_pred cCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCC---------C-
Confidence 579999 9999999998766554556778899999888775433321 444444332221111 00 0
Q ss_pred cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhhcc-
Q 011856 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF- 303 (476)
Q Consensus 229 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~~- 303 (476)
-|+++|++.+++.++..+++++...+|++|.+.+.+ .+++|.++|++||+++|+||+|.+| ..+. ......+
T Consensus 187 --~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~-~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~ 263 (448)
T 3meb_A 187 --IDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEA-QWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV 263 (448)
T ss_dssp --BCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH
T ss_pred --cCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHH-HHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh
Confidence 089999999986544567777666677788776544 4999999999999999999999988 4331 1222221
Q ss_pred CCCCc---hhhhhhhcC-CCCcEEEE--Ee--------c-H----HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh
Q 011856 304 GVTPD---LTTLGKIIG-GGLPVGAY--GG--------R-R----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 364 (476)
Q Consensus 304 g~~pD---i~t~sK~lg-~G~~iG~~--~~--------~-~----~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 364 (476)
+..++ +.++||.+| .|+|+||+ ++ + + ++++.+. ......+.+.+.+++.++.++|+..
T Consensus 264 ~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~ 340 (448)
T 3meb_A 264 DAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT---LQIRKTWSMSAIHGAYIVQVIVHDK 340 (448)
T ss_dssp HTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHHHTSH
T ss_pred hcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHH---HHHhcccCCccHHHHHHHHHHhcCh
Confidence 23345 337999999 79999998 66 3 4 5555554 1223344456778887777776421
Q ss_pred -------cC-CCHHHHHHHHHHHHHHHHHHHhhhc-----CCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHH
Q 011856 365 -------KE-PGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 431 (476)
Q Consensus 365 -------~~-~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (476)
+. ++..++++++++++.+.|+++.... .+....+..|.+.++.+. .++.
T Consensus 341 ~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~ 402 (448)
T 3meb_A 341 RLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT------------------PEHV 402 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC------------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC------------------HHHH
Confidence 11 3455666677777777776642100 011111223444333221 2344
Q ss_pred HHH-HHCCeEeccCCCcceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 432 RGM-LEEGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 432 ~~l-~~~Gv~~~~~~~~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
..+ .++||++.++. .|+++.. ++++|++++++|+++++++
T Consensus 403 ~~ll~~~gV~v~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 403 DYLKEKWSIYLVKAG---GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp HHHHHHHCEEECSGG---GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCEEEeCCC---cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 555 56799999854 4887665 8889999999999998764
No 127
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.94 E-value=4.2e-26 Score=227.18 Aligned_cols=317 Identities=11% Similarity=0.051 Sum_probs=214.7
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~-e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.+|++.+++.+++.. ++. ...+...+++++++++++ .. +++++++||++|++.+++.+ ..++++|++...+||
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~~ 109 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGIW 109 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccC--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCch
Confidence 578888888664321 111 123556788899998876 23 36999999999999999964 556788888888876
Q ss_pred CCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+.. .......|..+...+..... ..|+++|++.++++ ++++|+++++++++|.+.+ +++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~~~--------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 169 (393)
T 3kgw_A 110 GMRAAEIADRIGARVHQMIKKPGE--------------HYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDG 169 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTC--------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred hHHHHHHHHHcCCceEEEeCCCCC--------------CCCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHH
Confidence 532 23333344433222111110 12899999999853 5778888888888999988 889
Q ss_pred HHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCcc------
Q 011856 272 IRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------ 342 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~~------ 342 (476)
|+++|++||++||+||+|+ |. ..+..+.++ +|++ +++|+++++.++|++++++++++.+.......
T Consensus 170 i~~l~~~~~~~li~De~~~~g~---~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
T 3kgw_A 170 FGELCHRYQCLLLVDSVASLGG---VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTD 244 (393)
T ss_dssp HHHHHHHTTCEEEEECTTTTTT---SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred HHHHHHHcCCEEEEECCccccC---cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeec
Confidence 9999999999999999996 21 111122233 4665 45699987777999999999998876321100
Q ss_pred --------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEE
Q 011856 343 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (476)
Q Consensus 343 --------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (476)
...+++.++.+++++.++++.+.+ +++.++++++.+++.+.|+++.............+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 324 (393)
T 3kgw_A 245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITT 324 (393)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEE
T ss_pred HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEE
Confidence 112345678888888888887654 566788888888888888876211110111122345556
Q ss_pred EEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC-C--CcHHHHHHHHHHHHHHHHHh
Q 011856 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~-~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+.+. ....++.+.|+++ ||++.++. ...+|+++ . ++++++++++++|+++++++
T Consensus 325 ~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 325 VTVPAG-------------YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp EECCTT-------------BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred EeCCCC-------------CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 665321 1125788888888 99999753 34578765 3 59999999999999999865
No 128
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.94 E-value=2.7e-25 Score=221.50 Aligned_cols=328 Identities=13% Similarity=0.070 Sum_probs=221.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar 176 (476)
..|+|..+. ++.+|.+.+++.+++.. +.+. ..+...++.++++++++ ..+++++++||++|+..+++.+
T Consensus 9 ~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~- 79 (392)
T 2z9v_A 9 PVITLTAGP------VNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL- 79 (392)
T ss_dssp CSEECSSSC------CCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-
T ss_pred cceeecCCC------cCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-
Confidence 356765432 45789999998876653 2221 23456788999999886 4579999999999999999964
Q ss_pred hccCCceEEEEeCCCCCCch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011856 177 AFTGRERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (476)
..++++|++.+++||+... ......|..+...+... .+ ..|+++|++.+++. +++++|+++++
T Consensus 80 -~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~~ 143 (392)
T 2z9v_A 80 -ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-NE-------------AIDPQAVADMLKAH-PEITVVSVCHH 143 (392)
T ss_dssp -CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-TS-------------CCCHHHHHHHHHHC-TTCCEEEEESE
T ss_pred -cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEecc
Confidence 4566789999999887531 11122344332221111 01 12899999999642 25778888888
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHH
Q 011856 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 333 (476)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~ 333 (476)
++++|.+.+ +++|.++|++||+++|+||+|+.-.. ......+ .+|++ +++|.++++.++|++++++++++
T Consensus 144 ~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~ 215 (392)
T 2z9v_A 144 DTPSGTINP----IDAIGALVSAHGAYLIVDAVSSFGGM--KTHPEDC--KADIYVTGPNKCLGAPPGLTMMGVSERAWA 215 (392)
T ss_dssp EGGGTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB--SCCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHHHHH
T ss_pred CCCCceecc----HHHHHHHHHHcCCeEEEEcccccCCc--ccccccc--cceEEEecCcccccCCCceeEEEECHHHHH
Confidence 888999988 99999999999999999999962111 1111222 35665 57898876556799999999988
Q ss_pred hhcCCC--C--c-------------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011856 334 MVAPAG--P--M-------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (476)
Q Consensus 334 ~l~~~~--~--~-------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (476)
.+.+.. + . ......+.++.+++++.++++.+.+ ++..++++++.+++++.|+++ ...+
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 293 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GLSV 293 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 775311 0 0 0112334577777777788876643 356778888888888888775 2222
Q ss_pred ce-E-eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcHHHHHHH
Q 011856 394 AI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHT 463 (476)
Q Consensus 394 ~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~e~i~~~ 463 (476)
.. . ....+.++++.+... ....++.+.|.++ ||.+.++. ...+|+++ .+++++++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~ 360 (392)
T 2z9v_A 294 WAASDSIASPTTTAVRTPDG-------------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAA 360 (392)
T ss_dssp SSSSGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred ccCCccccCCceEEEECCCC-------------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHH
Confidence 11 0 012466677766311 0125688889887 99998763 34678874 5899999999
Q ss_pred HHHHHHHHHHh
Q 011856 464 ITAAEKVKMRF 474 (476)
Q Consensus 464 ~~~l~~~~~~~ 474 (476)
+++|+++++++
T Consensus 361 ~~~l~~~~~~~ 371 (392)
T 2z9v_A 361 LTALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998765
No 129
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.93 E-value=1.7e-25 Score=228.54 Aligned_cols=349 Identities=14% Similarity=0.053 Sum_probs=211.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
.|+.||||.+++++ +.|.+++.+++..+...+.+.+...+|++++++++ +.++++|++||++|++.+++.++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~ggt~A~~~al~~~~ 112 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 112 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHc-CCCcEEEcCCcHHHHHHHHHHHH
Confidence 46789999887532 78888888887765433335567788899998888 56899999999999999999875
Q ss_pred hc---cCCce---EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCC-CC
Q 011856 177 AF---TGRER---IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-GE 246 (476)
Q Consensus 177 ~~---~~~~~---ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~~ 246 (476)
.+ ++ +. ||+. ..+|+.+...+...|..+.....+. .++. ....++ .|+++|++.++++. ++
T Consensus 113 ~~~~~~G-d~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-----~~~~~~~~~~d~~~le~~i~~~~~~~ 183 (467)
T 1ax4_A 113 KYKQKEG-KAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEK--AFDS-----ETYDDWKGDFDIKKLKENIAQHGADN 183 (467)
T ss_dssp HHHHHTT-CCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGG--GGCT-----TSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred HhhccCC-CccceEEEe-ccccchhhHHHhccCCceecccccc--cccc-----cccCCcccccCHHHHHHHHHhcCCCC
Confidence 43 33 33 6655 3333544555555554332211100 0000 000112 28999999997532 36
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--cc------ccccch-hhccC----CCCchh--h
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--FR------LAYGGA-QEYFG----VTPDLT--T 311 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~r------~g~~~~-~~~~g----~~pDi~--t 311 (476)
+++|++++++|++|...++.+++++|+++|++||++||+||++.. .. .+..+. ...++ ..+|++ +
T Consensus 184 ~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s 263 (467)
T 1ax4_A 184 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 263 (467)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEe
Confidence 899999999888744556678899999999999999999998742 00 011000 00000 124554 5
Q ss_pred hhhhcCCCCcEE-EEEec-H-HHHHhhcCCCCc-cccCCCCCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011856 312 LGKIIGGGLPVG-AYGGR-R-DIMEMVAPAGPM-YQAGTLSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 312 ~sK~lg~G~~iG-~~~~~-~-~i~~~l~~~~~~-~~~~t~~~~~~~~aa-a~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (476)
++|.++ +|+| +++++ + ++++.+...... ....++++++..+.+ ..++++.+.+++..++..++.+++.+.|++
T Consensus 264 ~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 264 AKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp TTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 778774 4654 55666 6 787765421111 111244444444333 333566544334566666778888888877
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH-HHCCeEecc-C----------C------Ccc
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAP-S----------Q------FEA 448 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~-~----------~------~~~ 448 (476)
. .+.+. .+..|.++++.+..- ...+. .......++.+.| .++||.+.+ + + ...
T Consensus 342 ~--~~~~~--~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~ 412 (467)
T 1ax4_A 342 A--GIPIQ--YPTGGHAVFVDCKKL-VPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEF 412 (467)
T ss_dssp T--TCCBC--SSCCSSEEEEESTTT-CTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred C--CCCcc--cCCCceEEEEehhhh-ccccc----cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccce
Confidence 2 23222 233455566552110 00000 0011235788888 789999987 2 1 145
Q ss_pred eEEeCC---CcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLA---HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~---~t~e~i~~~~~~l~~~~~~ 473 (476)
+|+++. +|++|+++++++|++++++
T Consensus 413 iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 413 MRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 677654 7999999999999988765
No 130
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=3.6e-26 Score=229.41 Aligned_cols=331 Identities=13% Similarity=0.098 Sum_probs=207.2
Q ss_pred CEEEecccChhhccCCC-CcHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHH
Q 011856 99 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGAP----CLLENVLAEMVISAVP---SIEMVRF--VNSGTEAC 168 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~l~~~~~~~~~----~~~~~~la~~l~~~~~---~~e~v~~--~~sGseA~ 168 (476)
..+|||..| ++++. ++|.+.+++.++.......+.+ .++++++++++..... ..+++.+ +++|++|+
T Consensus 41 ~~~i~l~~g---~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 41 KRKVNLSIG---VYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SSCEECCCS---SCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred cCceeeeee---EEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 357888888 66444 6788888888773332211122 3455555555532221 1567754 99999999
Q ss_pred HHHHHHHHhccCC-ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 169 MGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 169 ~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
+.+..+++.+.++ +.|++.+++|+++. ..+...|..+...+.....+. ..|+++|++.++++++..
T Consensus 118 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~ 184 (409)
T 4eu1_A 118 RIGGDLLNRFVANCNRIYGPDVGYPNHE-SIFAKAGMELTPYSYYDPATK------------GLNLAGMLECLDKAPEGS 184 (409)
T ss_dssp HHHHHHGGGTSSSCCEEEEESSCCTHHH-HHHHHTTCEEEEECCEETTTT------------EECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHH-HHHHHcCCeEEEEEeecCcCC------------cCcHHHHHHHHHhCCCCc
Confidence 9988877777655 78888888887753 334444443332221000000 018999999997654456
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cc-hhhccCCCCchh---hhhhhcC-C
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GG-AQEYFGVTPDLT---TLGKIIG-G 318 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~-~~~~~g~~pDi~---t~sK~lg-~ 318 (476)
++++++..+|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. .. .....+..++++ +|||.+| .
T Consensus 185 ~~i~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 185 VILVHACAHNPTGVDPTHDD-WRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp EEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred EEEEECCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 66665555677787766444 999999999999999999999988 4431 12 222234556654 7999999 7
Q ss_pred CCcEEEE---EecHH----HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHHH
Q 011856 319 GLPVGAY---GGRRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQG 383 (476)
Q Consensus 319 G~~iG~~---~~~~~----i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~~ 383 (476)
|+|+||+ +++++ +++.+. ......+++.+++++.++.++|+.. +. ++.+++++++.+++.+.
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLA---LLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHH---HHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 56777 555554 1222345566788888888887632 11 45566777777777777
Q ss_pred HHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCCCcceEEeC-CCcHHHHH
Q 011856 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQ 461 (476)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~~~~~-~~t~e~i~ 461 (476)
|+++.....+....+..|.++++.+. .++...++ ++||++.|+. |+++ .+++++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ll~~~gv~v~p~~----Ri~~~~~~~~~i~ 398 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGLT------------------REQVELLRSEYHIYMTLNG----RAAVSGLNSTNVE 398 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCCC------------------HHHHHHHHHcCCEEEcCCC----EEEEEecCHhhHH
Confidence 77642100011111223333332220 23445555 6799999863 5653 46788899
Q ss_pred HHHHHHHHHH
Q 011856 462 HTITAAEKVK 471 (476)
Q Consensus 462 ~~~~~l~~~~ 471 (476)
+++++|++++
T Consensus 399 ~~~~~l~~~l 408 (409)
T 4eu1_A 399 YVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 131
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.93 E-value=4.7e-25 Score=217.37 Aligned_cols=326 Identities=14% Similarity=0.131 Sum_probs=218.3
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRL 174 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ 174 (476)
++||..| +++ .+|+|.+++.+++. +.++ .+...++.++++++++. .+++++++||++|++.+++.
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 5666665 333 78999999877532 1111 14456777788777752 24799999999999999996
Q ss_pred HHhccCCceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 175 ARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
+ ..++++|++.++.+|+.. .......|..+...+... . ...|+++|++.+++++ ++++|++.
T Consensus 76 ~--~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------~~~d~~~l~~~l~~~~-~~~~v~~~ 138 (366)
T 1m32_A 76 A--LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-V-------------ARPDVQAIDAILNADP-TISHIAMV 138 (366)
T ss_dssp S--CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-T-------------SCCCHHHHHHHHHHCT-TCCEEEEE
T ss_pred h--cCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-C-------------CCCCHHHHHHHHhcCC-CeEEEEEe
Confidence 4 235567888888888742 233334454433222111 0 1238999999998642 35666666
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI 331 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i 331 (476)
..++++|.+.+ +++|.++|++||++||+||+|+..... .... ...+|++ +++|+++++.++|++++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~--~~~~--~~~~di~~~s~~K~~~~~~g~G~~~~~~~~ 210 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGIP--MDIA--ALHIDYLISSANKCIQGVPGFAFVIAREQK 210 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCTT--TTTCSEEEEESSSTTCCCSSEEEEEEEHHH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCccccCcC--cccc--ccCccEEEecCcccccCCCceEEEEECHHH
Confidence 66677899988 999999999999999999999632221 1111 1236766 578999766678999999999
Q ss_pred HHhhcCCCCccc---------------cCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 332 MEMVAPAGPMYQ---------------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 332 ~~~l~~~~~~~~---------------~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
++.+......+. ...++.++++++++.++++.+.+ ++..++++++.+++.+.|+++ ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~ 288 (366)
T 1m32_A 211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFN 288 (366)
T ss_dssp HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCe
Confidence 887764211110 01357788888888889887654 246778888888888888775 222
Q ss_pred CceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---CcceEEeCC--CcHHHHHHHHHH
Q 011856 393 HAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLA--HSSDDIQHTITA 466 (476)
Q Consensus 393 ~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~~~~~~--~t~e~i~~~~~~ 466 (476)
+.... ...|.++++.+.+.. .....++.+.|.++||++.++. ...+|+++. ++++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 357 (366)
T 1m32_A 289 TLLDDELHSPIITAFYSPEDP-----------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTA 357 (366)
T ss_dssp BSSCGGGBCSSEEEEECCCCT-----------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHH
T ss_pred eccCchhcCceEEEEEcCccC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHH
Confidence 21111 124557788764200 0012578889999999998763 346777644 689999999999
Q ss_pred HHHHHHH
Q 011856 467 AEKVKMR 473 (476)
Q Consensus 467 l~~~~~~ 473 (476)
|++++++
T Consensus 358 l~~~~~~ 364 (366)
T 1m32_A 358 IRTAMYW 364 (366)
T ss_dssp HHHHCTT
T ss_pred HHHHHHh
Confidence 9988764
No 132
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-25 Score=224.10 Aligned_cols=327 Identities=11% Similarity=0.070 Sum_probs=211.3
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHh--cCCCC---C--CCH---HHHHH-HHHHHhhCCCCCeEEEeCCHHHH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFG---A--PCL---LENVL-AEMVISAVPSIEMVRFVNSGTEA 167 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~--~~~~~---~--~~~---~~~~l-a~~l~~~~~~~e~v~~~~sGseA 167 (476)
++|+|+.++. +++ +|+|.+++.+++.+ ...+. + ..+ ..+++ .++++++++.....++++||++|
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 3578888775 344 89999999998865 11111 1 112 22222 24777777422233567789999
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCCCc--hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 168 CMGVLRLARAFTGRERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
++.+++.+ ..+++.|++.+++|++.. ...+...|..+....++..+. -...|+++|++.+++.
T Consensus 98 ~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~-- 162 (407)
T 2dkj_A 98 NMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPD-----------TELIDLEEVRRLALEH-- 162 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTT-----------TSSCCHHHHHHHHHHH--
T ss_pred HHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcc-----------cCccCHHHHHHHHhhc--
Confidence 99999964 456678999998888763 122222222111110110000 0113899999999742
Q ss_pred CeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-c-cccccchhhccCCCCchh--hhhhhcCCCC
Q 011856 246 EIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (476)
Q Consensus 246 ~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~ 320 (476)
++++|++ +|+++ .+.+ +++|.++|++||++||+||+|++ + ..+.... ..+ .+|++ ++||+++ |+
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4566666 66654 4555 99999999999999999999975 6 4443221 112 26776 7999887 66
Q ss_pred cEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 321 PVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 321 ~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
++|+++++ +++++.+.... ..+.+.+.++..++++.++++.+.. +++.++++++.+++.+.|+++ ...+...
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 307 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKLI--FPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GYRIVTG 307 (407)
T ss_dssp SCEEEEESCHHHHHHHHHHH--TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGGG
T ss_pred CceEEEECCHHHHHHHHhhh--cccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--CceeecC
Confidence 88999999 79988775311 1223345567777777888887643 567788888888888888775 1211110
Q ss_pred eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeCC------CcHHHH
Q 011856 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------HSSDDI 460 (476)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~~------~t~e~i 460 (476)
++.|.++++.+..... ...++.+.|.++||++.++. ...+|+++. ++++++
T Consensus 308 -~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 308 -GTDNHLFLVDLRPKGL------------TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp -SCSSSEEEEECGGGTC------------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred -CCCceEEEEECcccCC------------CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 3467888887742110 12567788899999998753 234677653 799999
Q ss_pred HHHHHHHHHHHHH
Q 011856 461 QHTITAAEKVKMR 473 (476)
Q Consensus 461 ~~~~~~l~~~~~~ 473 (476)
++++++|++++++
T Consensus 375 ~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 375 PLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998875
No 133
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=7.6e-25 Score=217.54 Aligned_cols=333 Identities=15% Similarity=0.102 Sum_probs=219.1
Q ss_pred EEEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011856 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~a 171 (476)
.++|.|++.+.++...++...++|..++..+.+ .++++++++.++..+.++|++||++|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-----------------~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~ 67 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-----------------NDLLSNLKTVYNAEAAVIIPGSGTYGMEAV 67 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-----------------HHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-----------------HHHHHHHHHHhCCCCEEEEcCChhHHHHHH
Confidence 467899999999887766566788777665433 244455555554336789999999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchhHHh-hcCCC--CccCCCCCC--CCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADPFLV-KAGSG--VATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~-~~g~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
++. +.++++||+++++||+.....+. ..|.+ +...+.+.. .+. ...+...|++++++.+++. +
T Consensus 68 ~~~---~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~-------~~~~~~~d~~~l~~~i~~~--~ 135 (379)
T 3ke3_A 68 ARQ---LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEA-------PKPFAPVDIETAVAKIKED--K 135 (379)
T ss_dssp HHH---HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSS-------CCCEECCCHHHHHHHHHHH--T
T ss_pred HHh---CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccc-------cCCCCCCCHHHHHHHHhhc--C
Confidence 873 45788999999999986443332 23321 111111100 000 0001124899999999642 4
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEE
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 326 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~ 326 (476)
+++|++..+.+.+|.+.| .+++++|.++|++||++||+||+|+| +..+..+.+++...+.+++|+++++.++|+++
T Consensus 136 ~~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~g---~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~ 211 (379)
T 3ke3_A 136 SAIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIASG---CVWLDMKELGIDVLISAPQKGWSSTPCAGLVM 211 (379)
T ss_dssp CSEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTCT---TCCCCHHHHTCSEEEECTTTTTCSCCCEEEEE
T ss_pred CcEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEecccC---CccccccccCCCEEEecchhhcCCCCceEEEE
Confidence 667888777777887765 66799999999999999999999973 23344455676555667889998766799999
Q ss_pred ecHHHHHhhcCCC--Cccc-----------------cCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011856 327 GRRDIMEMVAPAG--PMYQ-----------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (476)
Q Consensus 327 ~~~~i~~~l~~~~--~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (476)
+++++++.+.+.. ..+. ..+++.|+..+++..++|+.+.+ ++..++.+++.+++++.|
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l 291 (379)
T 3ke3_A 212 LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVL 291 (379)
T ss_dssp ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 9999988876421 1111 01236678888888899988765 467777888888888888
Q ss_pred HHHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEEe--
Q 011856 385 IDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS-- 452 (476)
Q Consensus 385 ~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~~-- 452 (476)
+++..+ +..... ..+.+..+.+. +. . ..+.+.|.++||++.++. ...+|++
T Consensus 292 ~~~g~~--~~~~~~~~~~~i~~~~~~-------------~~-~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~ 354 (379)
T 3ke3_A 292 TDKGIE--SVAAEGFEAPGVVVSYTE-------------RD-D-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLF 354 (379)
T ss_dssp HHTTCC--BSBCTTCBCSSEEEEECS-------------CH-H-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECC
T ss_pred HHcCCE--ecCCccccCceEEEEccC-------------Cc-c-hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCC
Confidence 876321 111100 11222222221 11 1 123567889999988764 3456775
Q ss_pred CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++||++++++|+++++++
T Consensus 355 ~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 355 GLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp SHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999998875
No 134
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.93 E-value=2.1e-25 Score=221.41 Aligned_cols=315 Identities=13% Similarity=0.091 Sum_probs=213.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.+|++.+++.+++.... .....+...++.++++++++ .. +++++++||++|++ +++. ...++++|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~--~~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS--LLKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG--GCCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh--hcCCCCEEEEecCCcc
Confidence 47888888876553211 11124566788888988876 34 78999999999999 8874 2456778999999998
Q ss_pred CCchhHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+.....+ ...|..+...+.... + ..|+++|++.++++ ++++|+++++++++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPG-D-------------YVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTT-C-------------CCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCC-C-------------CCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 7432222 223332222211110 0 12899999999864 5889999999999999998 999
Q ss_pred HHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhh-cCCC---------
Q 011856 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMV-APAG--------- 339 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l-~~~~--------- 339 (476)
|.++|++||++||+||+|+.... ...... ..+|++ +++|+++++.++|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~~--~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGAE--EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLR 224 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTTS--CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHH
T ss_pred HHHHHHhcCCEEEEECcccccCc--cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHH
Confidence 99999999999999999962211 111111 235666 5679998777799999999998877 2100
Q ss_pred Ccc---------ccCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceE--eeeeceeE
Q 011856 340 PMY---------QAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMF 404 (476)
Q Consensus 340 ~~~---------~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~ 404 (476)
... ....+ +.+...+++..++++.+.+ +++.++++++.+++.+.|+++ ...+... ....+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~ 302 (384)
T 3zrp_A 225 NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVT 302 (384)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEE
T ss_pred HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEE
Confidence 000 11122 4566777777788876654 467788888888888888876 2221111 11235666
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---cceEEeC--CCcHHHHHHHHHHHHHHHHHh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++.+... ...++.+.|.++||.+.++.. ..+|+++ .++++|+++++++|+++++++
T Consensus 303 ~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 303 GVILKVA--------------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp EEECSSS--------------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCC--------------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 6666321 125788999999999987652 4577754 479999999999999998764
No 135
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.2e-23 Score=210.55 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=213.5
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC-CC-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GA-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~-~~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~ 168 (476)
+..|+|+.++ +..+|++.+++.+++.+.. .. .+ ..+...++.++++++++ .+++++|++||++++
T Consensus 26 ~~~~ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAG------MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGC------CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCc------CCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 4678887665 1468999999999998632 11 12 13556788889988886 457999999999999
Q ss_pred HHHHHHH-HhccCCceEEEEeCCCCCCchhHHhh---cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 169 MGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 169 ~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
..+++.. +...+++.|++.++.|++........ .|..+...+.....+. -|+++|++.+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~-------------~d~~~l~~~l~~-- 164 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGE-------------LPTWQWESLISK-- 164 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCC-------------CCGGGHHHHCCT--
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCC-------------cCHHHHHHHhCC--
Confidence 9998842 12456678888888888765444332 3443322221100110 178899998863
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchh--hhhhhcCCCCc
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLP 321 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~ 321 (476)
++++|+++++++++|.+.+ +++|.++|++||++||+||+|+ |.. ......++ +|++ +++|.+|++
T Consensus 165 -~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~---~~~~~~~~--~d~~~~s~~K~~g~~-- 232 (406)
T 3cai_A 165 -STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAAAPYR---LLDIRETD--ADVVTVNAHAWGGPP-- 232 (406)
T ss_dssp -TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTTTTTC---CCCHHHHC--CSEEEEEGGGGTSCS--
T ss_pred -CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccccCCC---CCCchhcC--CCEEEeehhhhcCCC--
Confidence 6889999999999999998 8999999999999999999995 211 11122333 5665 578987643
Q ss_pred EE-EEEecHHHHHhhcCCCCcc------ccCCCCCcHHHHHHHHHHHHHhcC-----------------CCHHHHHHHHH
Q 011856 322 VG-AYGGRRDIMEMVAPAGPMY------QAGTLSGNPLAMTAGIHTLKRLKE-----------------PGTYEYLNKIT 377 (476)
Q Consensus 322 iG-~~~~~~~i~~~l~~~~~~~------~~~t~~~~~~~~aaa~aal~~~~~-----------------~~~~~~~~~~~ 377 (476)
+| ++++++++++.+.+....+ .....+.|+++++++.++++.+.+ +++.++++++.
T Consensus 233 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3cai_A 233 IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVF 312 (406)
T ss_dssp CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHH
Confidence 89 9999999988876421100 011334677888788888887654 23444555556
Q ss_pred HHHHHHHHHHhhhcCCceEee---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------
Q 011856 378 GELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------- 445 (476)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------- 445 (476)
+++.+.|++ .+...... ..+.++++.+... + ..++.+.|.++||.+.++.
T Consensus 313 ~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~L~~~gi~v~~g~~~~~~~~~g 374 (406)
T 3cai_A 313 DYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV-----------P---ADRVVQRLADNGILAIANTGSRVLDVLG 374 (406)
T ss_dssp HHHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB-----------C---HHHHHHHHHHTTEECEECCSCHHHHHHT
T ss_pred HHHHHHHhc----CCCeEEcCCccccCCEEEEEECCc-----------C---HHHHHHHHHHCCcEEecCChHHHHHHcC
Confidence 666666554 22111111 1344666665310 1 2567888889999998753
Q ss_pred ----CcceEEeCC--CcHHHHHHHHHHHHH
Q 011856 446 ----FEAGFTSLA--HSSDDIQHTITAAEK 469 (476)
Q Consensus 446 ----~~~~~~~~~--~t~e~i~~~~~~l~~ 469 (476)
...+|+++. ++++|+++++++|++
T Consensus 375 ~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 375 VNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 246788654 489999999999875
No 136
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=5.6e-25 Score=216.33 Aligned_cols=324 Identities=13% Similarity=0.027 Sum_probs=204.6
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhcc
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~ 179 (476)
+++|.++ ..|+.+|++.+++.+++.......+..+...+++++++++++ ..+++++++||++|++.+++.+ ..
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~--~~ 88 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LR 88 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH--hC
Confidence 5666554 356789999999999887532233467889999999999876 5678999999999999999964 23
Q ss_pred CCceEEEEeCCCCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC----CCCeEEEEEcc
Q 011856 180 GRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEP 254 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi~ep 254 (476)
++++|++.+++||+.... .+...|..+...+.. ... -|+++|++.+++. +.++++|++++
T Consensus 89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~--------------~d~~~l~~~l~~~~~~~~~~~~~v~~~~ 153 (359)
T 1svv_A 89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGK--------------LRVADIESALHENRSEHMVIPKLVYISN 153 (359)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSC--------------CCHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCe--------------ecHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 567888888888876543 233334333222111 000 1699999999753 12378888887
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccccc-chhhccC--CCCchhh--hhhhcCCCCcEEEEEecH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFG--VTPDLTT--LGKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~-~~~~~~g--~~pDi~t--~sK~lg~G~~iG~~~~~~ 329 (476)
+ +++|.+.+ .+++++|.++|++||++||+||+|.+|..+.. .....++ ..+|+++ .+|. ++...+|++++++
T Consensus 154 ~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~ 230 (359)
T 1svv_A 154 T-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND 230 (359)
T ss_dssp S-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG
T ss_pred C-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc
Confidence 7 46787776 57799999999999999999999965511111 0011111 2356654 5674 3335678999999
Q ss_pred HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 330 ~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
++++.+.... .....+++.+....++..+ .+++ ++..++++++.+++.+.| +. ....+. .+..+.++++
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~--~~~~~~~~~~ 302 (359)
T 1svv_A 231 ALKPNARHLI-KQRGALMAKGWLLGIQFEV---LMKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLA--WPSASNQLFP 302 (359)
T ss_dssp GGCTTHHHHH-HHTTCCCTTTHHHHHHHHH---HTSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBS--SCCSSSEECB
T ss_pred cHHHHHHHHH-hcCCcccccchhhHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEc--cCCccceEEE
Confidence 8877664210 0022223323222222222 2333 346677777788888777 43 122211 1233444444
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccC---CCcceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~---~~~~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+. .++.+.|+++ ||++.+. +...+|+ ++.++++++++++++|+++++++
T Consensus 303 ~~~------------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 303 ILE------------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp EEE------------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred EcC------------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 331 3677889998 9988432 2345777 45689999999999999988764
No 137
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.93 E-value=1.1e-24 Score=213.96 Aligned_cols=322 Identities=17% Similarity=0.092 Sum_probs=199.8
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
..+|||.++ + .++.+|++++++.+++........+.+...+++++++++++..++++|++||++|++.+++. +
T Consensus 7 ~~~id~~~~---~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~---~ 79 (356)
T 1v72_A 7 PPALGFSSD---N-IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA---M 79 (356)
T ss_dssp CCCCBCSCG---G-GCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT---S
T ss_pred CceEeeccC---C-ccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHH---h
Confidence 468898876 3 35689999999998864211122256788899999999886333589999999999999994 3
Q ss_pred cCCceEEEEeCCCCCCchhH--Hhhc--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH-HHhcC----CCCeEE
Q 011856 179 TGRERIIKFEGCYHGHADPF--LVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAA 249 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~--~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~----~~~~a~ 249 (476)
.++++.|+....+|+..... +... |..+...+.. .+ .-|+++|++ .+++. ++++++
T Consensus 80 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~-------------~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 80 TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AA-------------KLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GG-------------CCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred cCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CC-------------eEcHHHHHHHhhhcchhhccCCceE
Confidence 44444444445555543332 3333 4433221110 00 117999999 88642 125788
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--ccccchhhccC--CCCchh--hhhhhcCCCCcE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDLT--TLGKIIGGGLPV 322 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~~~~~~~~g--~~pDi~--t~sK~lg~G~~i 322 (476)
|++++++ ++|.+. +.+++++|.++|++||++||+||+|..+ . .+.. ...++ ...|++ +++|. |.|+
T Consensus 145 v~~~~~~-~tG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g~~~ 217 (356)
T 1v72_A 145 VSITQAT-EVGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---GVLA 217 (356)
T ss_dssp EEEESSC-TTSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---TCSS
T ss_pred EEEEcCC-CCCccC-CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---CCcC
Confidence 9888865 578764 5667999999999999999999999643 1 1211 11111 134544 57898 3366
Q ss_pred E--EEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 323 G--AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 323 G--~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
| ++++++++++.+.... ...++.... ...++.++++.++++ ++.++++++.+++++.|+++ .++....
T Consensus 218 G~g~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~ 290 (356)
T 1v72_A 218 AEAIVLFNTSLATEMSYRR--KRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL---GGVEVLG 290 (356)
T ss_dssp CEEEEESSGGGHHHHHHHH--HHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---TTEEEES
T ss_pred ccEEEEECHHHHhhHHHHh--hccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC---CCcEEcc
Confidence 6 7778999887764210 111222221 223334455555542 24455566666666666542 1222212
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+..+.++++.+. .++.+.|.++||.+.++. ...+|++ ..++++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 291 GTEANILFCRLD------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCCSSEEEEEEC------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCCccEEEEEcC------------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 344556666542 267788899999998754 2457774 567999999999999988765
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 353 ~ 353 (356)
T 1v72_A 353 T 353 (356)
T ss_dssp -
T ss_pred h
Confidence 3
No 138
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.93 E-value=6e-25 Score=217.77 Aligned_cols=316 Identities=13% Similarity=0.064 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~--~~~~~~la~~l~~~~~-~~--e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (476)
.+|+|.+++.+++.. ..++ .+...+++++++++++ .. +.+++++||++|++.+++.. ..++++||+.+++
T Consensus 30 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~ 104 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY---FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGG 104 (376)
T ss_dssp CCHHHHHHHTSCCCC---CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESS
T ss_pred CcHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCC
Confidence 478888888765432 1122 2556788888888875 22 34555899999999999963 3567789999888
Q ss_pred CCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 011856 191 YHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (476)
Q Consensus 191 yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (476)
||+.... .....|..+...+.+.... .|+++|++.++ +++++|+++++++++|.+.+ +
T Consensus 105 ~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l 163 (376)
T 3f0h_A 105 SFGHRFVQLCEIHEIPYVALKLEHGKK--------------LTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----T 163 (376)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTCC--------------CCHHHHHTTTT---SCCCEEEEESEETTTTEECC----H
T ss_pred hhhHHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHhhc---cCceEEEEecccCCcceecC----H
Confidence 8874422 2222343332211111111 17899988764 36788888888888999998 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCCC-cc-----
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MY----- 342 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~-~~----- 342 (476)
++|+++|++||++||+||+|+.+ +. +..+.+++...+.+++|+++++.++|++++++++++.+.+... .+
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK 240 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence 99999999999999999999754 32 2234455544455788999866678999999999888764211 00
Q ss_pred --------ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCC
Q 011856 343 --------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 413 (476)
Q Consensus 343 --------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~ 413 (476)
....++.+..+++++.++++.+.+.+..+++.+....+++.|.+...+.++..... ..+.++.+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--- 317 (376)
T 3f0h_A 241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTT--- 317 (376)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESS---
T ss_pred HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCC---
Confidence 01233445555577778887765443344444444455555544443333211111 122222222110
Q ss_pred cCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC--CCcHHHHHHHHHHHHHHHHHh
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
....++.+.|+++ ||.+.++. ...+|+++ .+|++|+++++++|++++++-
T Consensus 318 -----------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 318 -----------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp -----------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred -----------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1135788889988 99998763 34578864 679999999999999998753
No 139
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.93 E-value=6.8e-25 Score=219.97 Aligned_cols=317 Identities=13% Similarity=0.077 Sum_probs=213.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~--~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
.+|++.+++.+++. .+.. ..+...+++++++++++ ..+ .+++++||++|++.+++.+ ..++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI---GQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCCC---CTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhcccc---ccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 47888888765431 1111 12456788888888876 334 4889999999999999964 56778999999999
Q ss_pred CCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
|+.. ...+...|..+...+.+... .-|+++|++.++++ ++++|+++++++++|.+.+ ++
T Consensus 99 ~~~~~~~~~~~~g~~~~~v~~~~~~--------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~ 158 (411)
T 3nnk_A 99 FGHLLCEIARRCRAEVHTIEVPWGE--------------VFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LA 158 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTC--------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCC--------------CCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HH
Confidence 8742 22333334433222111100 01899999999753 5788888888889999988 88
Q ss_pred HHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhcCCC---Ccc-----
Q 011856 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---PMY----- 342 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~~~~---~~~----- 342 (476)
+|.++|++||++||+||+|+.-.. ......++....+.+++|+++++.++|++++++++++.+.+.. +.+
T Consensus 159 ~i~~l~~~~~~~li~Dea~~~~~~--~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 236 (411)
T 3nnk_A 159 ELGEICRRYDALFYTDATASLGGN--PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAH 236 (411)
T ss_dssp THHHHHHHHTCEEEEECTTTBTTB--CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTC
T ss_pred HHHHHHHHcCCEEEEECCcccCCc--ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccc
Confidence 999999999999999999852111 1122233333333467799887778999999999988776421 000
Q ss_pred -------------------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 343 -------------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 343 -------------------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
.....+.|..+++++.++++.+.+ ++..++++++.+++.+.|+++. ..+.
T Consensus 237 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~ 314 (411)
T 3nnk_A 237 RDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG--LETF 314 (411)
T ss_dssp CCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBC
T ss_pred ccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeC
Confidence 112235577888888888887654 3677888888888888888752 2111
Q ss_pred e-EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcHHHHHHHHH
Q 011856 395 I-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTIT 465 (476)
Q Consensus 395 ~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~e~i~~~~~ 465 (476)
. .....+.++++.+.+. ....++.+.|+++ ||.+.++. ...+|+++ .+++++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~ 381 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQG-------------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLS 381 (411)
T ss_dssp SCGGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred CCcccccccEEEEECCCC-------------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHH
Confidence 1 1122356666666321 0125778888876 99998752 23577765 458999999999
Q ss_pred HHHHHHHHh
Q 011856 466 AAEKVKMRF 474 (476)
Q Consensus 466 ~l~~~~~~~ 474 (476)
+|+++++++
T Consensus 382 ~l~~~l~~~ 390 (411)
T 3nnk_A 382 ALEAVLNYL 390 (411)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998764
No 140
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.93 E-value=3.9e-24 Score=215.38 Aligned_cols=328 Identities=16% Similarity=0.124 Sum_probs=214.1
Q ss_pred EcCCCEEEecccChhhccCCCCcHHHHHHHHHHHH--hcCCC--C-------CCCHHHHHHHHHHHhhCC-CCCeEEEeC
Q 011856 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSF--G-------APCLLENVLAEMVISAVP-SIEMVRFVN 162 (476)
Q Consensus 95 d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~--~~~~~--~-------~~~~~~~~la~~l~~~~~-~~e~v~~~~ 162 (476)
+.++..|+|+.++ ++.+|++.+++.+++. +.... . ...+...++.++++++++ +.++++|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 3456678887654 4579999999998887 32111 0 013455788899998886 456999999
Q ss_pred CHHHHHHHHHHHHH-hcc-CCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 163 SGTEACMGVLRLAR-AFT-GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 163 sGseA~~~al~~ar-~~~-~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
||++|++.+++.+. .+. +++.|++.++.|++........ .|..+...+... .+ ..|+++|++
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~ 158 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NG-------------IIDLKELEA 158 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TS-------------CCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CC-------------ccCHHHHHH
Confidence 99999999999543 233 3678888888888755443322 243322211111 00 018999999
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhc
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKII 316 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~l 316 (476)
.+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|++-.. ........+|+++ ++|.+
T Consensus 159 ~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~~~~~di~~~s~sK~~ 227 (423)
T 3lvm_A 159 AMRD---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSVGKL----PIDLSQLKVDLMSFSGHKIY 227 (423)
T ss_dssp HCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTTTSCCSEEEEESTTTT
T ss_pred hcCC---CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhcCCC----CcChhhcCCCEEEechHHhc
Confidence 9874 6889999999999999998 99999999999999999999963211 1122233578775 56966
Q ss_pred CCCCcEEEEEecHHHHHhhcCCCC----ccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 317 GGGLPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 317 g~G~~iG~~~~~~~i~~~l~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+ +.++|++++++++++.+.+... .....+.+.++..++++.++++.+.+ +++.++++++.+++++.|+++
T Consensus 228 g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 303 (423)
T 3lvm_A 228 G-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI--- 303 (423)
T ss_dssp S-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred C-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 5 3349999999887666553110 00122345677888888888887654 456666666666666666443
Q ss_pred cCCceEeee----eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--------------------
Q 011856 391 AGHAICGGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------- 446 (476)
Q Consensus 391 ~~~~~~v~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------- 446 (476)
+....... .+.++.+.+... + ..++.+.|.+ |.+.++..
T Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 304 -EEVYLNGDLEHGAPNILNVSFNYV-----------E---GESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp -TTEEEESCSTTBCTTEEEEEETTS-----------C---HHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred -CCEEEeCCccccCCCeEEEEeCCC-----------C---HHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence 21111111 234556655211 1 1455666655 77766421
Q ss_pred ---cceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 447 ---EAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ---~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++ ..++++++++++++|+++++++
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 346775 4569999999999999998765
No 141
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.93 E-value=1.7e-24 Score=217.38 Aligned_cols=321 Identities=13% Similarity=0.035 Sum_probs=210.5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHhhCC-CCCeEE-EeCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 113 IGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~~~~~~---~~~~~~la~~l~~~~~-~~e~v~-~~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
++.+++.+.+++.+++.+.....+. .+...+++++++++++ ..+.++ +++||++|++.+++.. ..++++|++.
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~ 92 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP 92 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence 4444444445555555542222222 3557889999999987 445555 8999999999999853 5667889999
Q ss_pred eCCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+++||+.. ...+...|..+...+..... .-|+++|++.+++. ++++|+++++++++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~-- 154 (416)
T 3isl_A 93 IYGRFGYLLTEIAERYGANVHMLECEWGT--------------VFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP-- 154 (416)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTTC--------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC--
T ss_pred cCCcccHHHHHHHHhcCCeeEEEecCCCC--------------CCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC--
Confidence 99998732 22333344433222111100 01899999999742 5688888888889999988
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCC-----
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----- 339 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~----- 339 (476)
+++|.++|++||++||+||+|+.... ......+ .+|++ +++|.++++.++|++++++++++.+.+..
T Consensus 155 --l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~G 228 (416)
T 3isl_A 155 --LKAIGEACRTEDALFIVDAVATIGGC--EVKVDEW--KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERG 228 (416)
T ss_dssp --CHHHHHHHHHTTCEEEEECTTTTTTS--CCCTTTT--TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------
T ss_pred --HHHHHHHHHHcCCEEEEECCccccCC--Ccchhhc--CCCEEEecCccccCCCCCeEEEEECHHHHHHhhcccccccc
Confidence 89999999999999999999952111 1111222 34655 56799887778999999999988776321
Q ss_pred ------------------------------CccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH
Q 011856 340 ------------------------------PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 340 ------------------------------~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 386 (476)
........+.+..++++..++++.+.+ ++..++++++.+++.+.|++
T Consensus 229 w~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (416)
T 3isl_A 229 IATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA 308 (416)
T ss_dssp ------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000112234577788888888876654 46778888888888888887
Q ss_pred HhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcH
Q 011856 387 AGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSS 457 (476)
Q Consensus 387 ~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~ 457 (476)
.. ..+.... ...+.++++.+.+. ....++.+.|+++ ||.+.++. ...+|+++ ..++
T Consensus 309 ~g--~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~ 373 (416)
T 3isl_A 309 MG--LRLFGDDSCKMPVVTCVEIPGG-------------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRK 373 (416)
T ss_dssp TT--CCBCSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSH
T ss_pred cC--CEeccCccccCCcEEEEeCCCC-------------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcH
Confidence 42 2211110 12356666666321 1125788888887 99998753 34578765 3344
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011856 458 DDIQHTITAAEKVKMRF 474 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~~ 474 (476)
+++++++++|+++++++
T Consensus 374 e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 374 ENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44999999999998764
No 142
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.93 E-value=3.7e-25 Score=229.05 Aligned_cols=354 Identities=12% Similarity=0.032 Sum_probs=209.6
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhh----CC--CCCeEEEeCCHHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISA----VP--SIEMVRFVNSGTEAC 168 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~---~~~~~~~~~la~~l~~~----~~--~~e~v~~~~sGseA~ 168 (476)
|.+|++...+++.+..++.+|++++++.+++.....+ .+..+++.++++.+.+. .+ ..+++++++||++|+
T Consensus 98 g~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 98 EDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred cccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 3355544445555666778899999888888653211 22357788888888665 22 147999999999999
Q ss_pred HHHHHHH--Hhc-cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcC
Q 011856 169 MGVLRLA--RAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENN 243 (476)
Q Consensus 169 ~~al~~a--r~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (476)
..+++.. +.+ .+++.|++.+++|+++...+ ...|..+...++.. ..+ .. -|+++|++.++.
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~---------~~---~d~~~l~~~l~~- 243 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIP-ELKDYELVEVDLHSYEKND---------WE---IEPNEIEKLKDP- 243 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSG-GGGGSEEEEECCCEETTTT---------SE---ECHHHHHHHSCT-
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHH-HHcCCeEEEEEecCCcccC---------CC---CCHHHHHHHhCC-
Confidence 9999842 113 34578888888887754332 22333222211110 000 00 078999998863
Q ss_pred CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcC-CCC
Q 011856 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGL 320 (476)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg-~G~ 320 (476)
++++|+++..++++|.+.+.++ +++|.++|+ +||+++|+||+|.+| ...........+....+.+|||.+| .|+
T Consensus 244 --~~k~v~l~~p~NPtG~~~~~~~-l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 244 --SIKALIVVNPTNPTSKEFDTNA-LNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp --TEEEEEEESSCTTTCBCCCHHH-HHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred --CCeEEEEeCCCCCCccccCHHH-HHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 6777777666677888776444 999999999 589999999999988 4322211111222334558999999 799
Q ss_pred cEEEEEecHH-----HHHhhcC-----------------------------CCCccccCCCCCcHHHHHHH-HHHHHHhc
Q 011856 321 PVGAYGGRRD-----IMEMVAP-----------------------------AGPMYQAGTLSGNPLAMTAG-IHTLKRLK 365 (476)
Q Consensus 321 ~iG~~~~~~~-----i~~~l~~-----------------------------~~~~~~~~t~~~~~~~~aaa-~aal~~~~ 365 (476)
|+||++++++ +++.+.+ ........+.+.+++.+.++ +.++..+.
T Consensus 321 RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 321 RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 9999998876 4443310 01222334456666666662 11233332
Q ss_pred -------C----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC----CcCchhhcccchHHHHHH
Q 011856 366 -------E----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VYNFEDAKKSETTKFARF 430 (476)
Q Consensus 366 -------~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~ 430 (476)
. ++..++++++.+++.+.|. .++....+..|.++++.+.... ...+..... +.....++
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~-~~~~~~~~ 474 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT-NNFEQVDF 474 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH-HHCCHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhh-ccCCHHHH
Confidence 1 2333444444444444442 3332223445666666653100 000000000 00011344
Q ss_pred HHHH-HHCCeEeccCC-----CcceEEeCC-CcHHHHHHHHHHHHHHHHHh
Q 011856 431 YRGM-LEEGVYFAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 431 ~~~l-~~~Gv~~~~~~-----~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+ .++||++.|+. ...+|+++. ++++++++++++|.++++++
T Consensus 475 ~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 475 LLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 4444 47899998863 346789877 59999999999999998764
No 143
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=1.5e-24 Score=216.90 Aligned_cols=331 Identities=14% Similarity=0.058 Sum_probs=201.6
Q ss_pred EEecccChhhccCCCC--cHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHH
Q 011856 101 YIDYVGSWGPAIIGHA--DDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF--VNSGTEAC 168 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~--~~sGseA~ 168 (476)
.|||..|...+..++. .+.+.+++.+.+.....++| ..++++++++++...++ .+++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5777777321222221 35688888776653222222 23667777777765543 2789987 99999999
Q ss_pred HHHHHHHHhcc-CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCC
Q 011856 169 MGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (476)
Q Consensus 169 ~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (476)
..+++..+.+. +++.|++.+++|+++. ..+...|..+...+... ..++ |++++++.+++..+
T Consensus 110 ~~~~~~l~~~~~~gd~Vlv~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~~~ 174 (401)
T 7aat_A 110 RVGANFLQRFFKFSRDVYLPKPSWGNHT-PIFRDAGLQLQAYRYYDPKTCSL--------------DFTGAMEDISKIPE 174 (401)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCTTHH-HHHHHTTCEEEEEECEETTTTEE--------------CHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhccCCCEEEEcCCCchhHH-HHHHHcCCeeEeeeeeccccCcc--------------CHHHHHHHHHhCCC
Confidence 99998655443 4678888898888754 33444444332221100 0111 78888888876545
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhhc-cCCCCch---hhhhhhcC
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDL---TTLGKIIG 317 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pDi---~t~sK~lg 317 (476)
++++|+++..+|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. ...... .+..+++ .++||.++
T Consensus 175 ~~~~v~i~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 253 (401)
T 7aat_A 175 KSIILLHACAHNPTGVDPRQEQ-WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 253 (401)
T ss_dssp TCEEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc
Confidence 6788888888888888766554 999999999999999999999888 4321 112211 1233444 47999999
Q ss_pred -CCCcEEEEEe---cHHH----HHhhcCCCCccccCCCCCcHHHHHHHHHHHHH-------hcC-CCHHHHHHHHHHHHH
Q 011856 318 -GGLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LKE-PGTYEYLNKITGELT 381 (476)
Q Consensus 318 -~G~~iG~~~~---~~~i----~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~-------~~~-~~~~~~~~~~~~~l~ 381 (476)
.|+|+||+++ +++. .+.+. ......+.+.+.+++.++...++. .+. ++..++++++.+++.
T Consensus 254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 330 (401)
T 7aat_A 254 LYGERAGAFTVICRDAEEAKRVESQLK---ILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV 330 (401)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEEEeCCHHHHHHHHHHHH---HHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999875 6663 33333 111222334455555555544421 111 345566777777777
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHH
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDI 460 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i 460 (476)
+.|+++....++....+..|.++++.+. ...+...+.++||++.++ +|+++. +++++|
T Consensus 331 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~~----~Ris~~~~~~~~i 389 (401)
T 7aat_A 331 SNLKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTKD----GRISVAGVASSNV 389 (401)
T ss_dssp HHHHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccCC----CeEEeccCChhhH
Confidence 7776652111121112233444443221 123333445779999865 577654 567779
Q ss_pred HHHHHHHHHHH
Q 011856 461 QHTITAAEKVK 471 (476)
Q Consensus 461 ~~~~~~l~~~~ 471 (476)
++++++|++++
T Consensus 390 ~~~~~~l~~~~ 400 (401)
T 7aat_A 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 144
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.92 E-value=1.4e-24 Score=212.92 Aligned_cols=312 Identities=14% Similarity=0.103 Sum_probs=211.0
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~~---~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
.+|+|.+++.+++.. +++. ..+...++.++++++++. .+++++++||++|+..+++ .+.+ ++|++.++.|
T Consensus 11 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~---~~~~-d~vl~~~~~~ 84 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLA---NLDR-GPVLVLVNGA 84 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHH---TCSC-CCEEEEECSH
T ss_pred CCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHH---HhcC-CcEEEEcCCC
Confidence 578999998876654 2221 234578899999998862 4689999999999999998 4444 7899998888
Q ss_pred CCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
|+.. .......|..+...+... .+ ..|+++|++.++++ ++++|+++++++++|.+.+ ++
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~ 144 (353)
T 2yrr_A 85 FSQRVAEMAALHGLDPEVLDFPP-GE-------------PVDPEAVARALKRR--RYRMVALVHGETSTGVLNP----AE 144 (353)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCT-TS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HH
T ss_pred chHHHHHHHHHcCCceEEEeCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----HH
Confidence 8751 122233344332221111 00 12899999999853 4678888888888999988 99
Q ss_pred HHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCc------
Q 011856 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM------ 341 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~------ 341 (476)
+|.++|++||+++|+||+|. + ... .....++ +|++ +++|.++++..+|++++++++++.+......
T Consensus 145 ~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~ 219 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLAR 219 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHH
T ss_pred HHHHHHHHcCCeEEEEcCcc-ccccc--ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHH
Confidence 99999999999999999994 4 321 1122233 4665 4679887655589999999998877510000
Q ss_pred ------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCC
Q 011856 342 ------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (476)
Q Consensus 342 ------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (476)
.....++.++.+++++.++++.+.+ ++..++++++.+++.+.|+++ ...+.......+.++++.+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~- 296 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLVVRPPEG- 296 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEEEECCTT-
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEEEECCCC-
Confidence 0112335577788888888887643 356778888888888888774 2211111011455556665311
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeC--CCcHHHHH-HHHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQ-HTITAAEKVKMR 473 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~--~~t~e~i~-~~~~~l~~~~~~ 473 (476)
....++.+.|.++||.+.++. ...+|+++ .+++++++ +++++|++++++
T Consensus 297 ------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 297 ------------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ------------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ------------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 012578889999999998753 34678865 47889998 999999998764
No 145
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.92 E-value=2.6e-24 Score=219.04 Aligned_cols=347 Identities=14% Similarity=0.021 Sum_probs=211.4
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
.|+.|+||.++.++.. -.+++.+++. .+.....+.+...+|++.+++++ +.+++++++||++|++.+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~al~~l- 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEAYAGSENFYHLERTVQELF-GFKHIVPTHQGRGAENLLSQLA- 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHHHH-
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhhcccChhHHHHHHHHHHHh-CCCcEEEeCCcHHHHHHHHHHh-
Confidence 3667999988754332 2466666654 33222235677788888888888 5679999999999999999854
Q ss_pred hccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-CHHHHHHHHhcCC-CCeEEEEEc-
Q 011856 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILE- 253 (476)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~a~vi~e- 253 (476)
.++++ |+..++||+.+...+...|..+...+...... + .+...+.++ |+++|++.+++.. +.+++|+++
T Consensus 111 --~~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~-~----~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~ 182 (456)
T 2ez2_A 111 --IKPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHD-A----GLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAV 182 (456)
T ss_dssp --CCTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGC-T----TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred --CCCCC-EeccccccchhHHHHHHcCCEEEEeccccccc-c----cccccccCCCCHHHHHHHHHhccccceeEEEEec
Confidence 34444 78888888876666666666543322210000 0 000001122 8999999997532 235788887
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-cccccch--hhccCCCCchhhhh-hhcC-C
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTLG-KIIG-G 318 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~~~~--~~~~g~~pDi~t~s-K~lg-~ 318 (476)
|+|+++|.+ .+.+++++|.++|++||++||+||+|+. + +.+.... .+..+..+|++++| |.++ .
T Consensus 183 p~n~ptG~~-~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~ 261 (456)
T 2ez2_A 183 TVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261 (456)
T ss_dssp SBTTTTSBC-CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred cCCCCCCcc-CCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence 444477864 4567799999999999999999999964 3 3332211 01223447877653 4444 4
Q ss_pred CCcEEEEEe-cHHHHHhhcCCCCccc-cCCC-CCcHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011856 319 GLPVGAYGG-RRDIMEMVAPAGPMYQ-AGTL-SGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (476)
Q Consensus 319 G~~iG~~~~-~~~i~~~l~~~~~~~~-~~t~-~~~~~~~aa-a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (476)
| ++|++++ ++++++.+.......+ ..++ +.++..+++ +.+.++.++ +++.++.+++.+++++.|++. .+.+
T Consensus 262 ~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~--g~~~- 336 (456)
T 2ez2_A 262 N-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA--GVPI- 336 (456)
T ss_dssp S-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT--TCCB-
T ss_pred C-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC--CCcc-
Confidence 5 6899988 6888776642111101 1112 224334444 555555442 456777777888888888763 2222
Q ss_pred eEeeeeceeEEEEEec--CCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC-----------------CcceEEeCC
Q 011856 395 ICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFTSLA 454 (476)
Q Consensus 395 ~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-----------------~~~~~~~~~ 454 (476)
..+..|.++++.+.. +... .+......+.+.| .++||.+.+.+ ...+|+++.
T Consensus 337 -~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~ 408 (456)
T 2ez2_A 337 -VEPVGGHAVFLDARRFCEHLT-------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIP 408 (456)
T ss_dssp -CSSCCSSEEEEEHHHHTTTSC-------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred -ccCCCceEEEEEhHHhcCCCC-------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeC
Confidence 123346666766531 1100 0000134556677 57899864421 245677655
Q ss_pred ---CcHHHHHHHHHHHHHHHHHh
Q 011856 455 ---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 455 ---~t~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++++|++++++.
T Consensus 409 ~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 409 RRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 79999999999999998753
No 146
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.92 E-value=3.2e-24 Score=218.97 Aligned_cols=335 Identities=13% Similarity=0.027 Sum_probs=223.8
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhc----C--CC-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----T--SF-G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~----~--~~-~--~~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
+..|+| + +.+|+.++.+.+++.++++.. . ++ + ...+...++.++++++++ .+++|+|++|++++
T Consensus 67 ~~iyld---~---~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFL---G---NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECB---T---TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEec---C---CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 445665 2 456877888888887776541 1 11 1 122445678888888876 46799999999999
Q ss_pred HHHHHHHHHhc-cCCceEEEEeCCCCCCchhHH---hhcCCCCccC--C-CCCCCCCCCCCCCceeeccCCCHHHHHHHH
Q 011856 168 CMGVLRLARAF-TGRERIIKFEGCYHGHADPFL---VKAGSGVATL--G-LPDSPGVPKGATYETLTAPFNDVSALENLF 240 (476)
Q Consensus 168 ~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 240 (476)
+..+++..... ..+++|++.++.||+...... ...|..+... . .|..... .-|+++|++.+
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~------------~~d~~~l~~~i 208 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEE------------TLRIEDILEVI 208 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCS------------SCCHHHHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCC------------ccCHHHHHHHH
Confidence 99999853211 235669998999987554332 2334332100 0 0110000 01799999999
Q ss_pred hcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC
Q 011856 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (476)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~ 318 (476)
+++.+++++|+++++++++|.+.+ +++|.++|++||+++|+|++|+.-.. ......++ .|++ +++|.+++
T Consensus 209 ~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~g~~--~~~~~~~~--~D~~~~s~~K~l~~ 280 (465)
T 3e9k_A 209 EKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAVGNV--ELYLHDWG--VDFACWCSYKYLNA 280 (465)
T ss_dssp HHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CCEEEECSSSTTCC
T ss_pred HhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhcCCc--CCchhhcC--CCEEEECccccccc
Confidence 754347899999999999999998 99999999999999999999952100 11112233 4555 67799964
Q ss_pred C-CcEEEEEecHHHHHhhcCCCCccccC----------------------CCCCcHHHHHHHHHHHHHhcC---CCHHHH
Q 011856 319 G-LPVGAYGGRRDIMEMVAPAGPMYQAG----------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEY 372 (476)
Q Consensus 319 G-~~iG~~~~~~~i~~~l~~~~~~~~~~----------------------t~~~~~~~~aaa~aal~~~~~---~~~~~~ 372 (476)
| .++|++++++++++.+.+....+.++ ..+.+++++++..++++.+.+ +++.++
T Consensus 281 gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~ 360 (465)
T 3e9k_A 281 GAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKK 360 (465)
T ss_dssp CTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4 46899999999877665321110000 115677888888888887754 567788
Q ss_pred HHHHHHHHHHHHHHHhhh-------cCCc----eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEe
Q 011856 373 LNKITGELTQGIIDAGKK-------AGHA----ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~-------~~~~----~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 441 (476)
.+++.+++.+.|+++... .++. .+....|.++++.+... ..++.+.|.++||++
T Consensus 361 ~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~---------------~~~l~~~L~~~Gi~v 425 (465)
T 3e9k_A 361 SVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP---------------NKDVFQELEKRGVVC 425 (465)
T ss_dssp HHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT---------------TCCHHHHHHTTTEEC
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC---------------HHHHHHHHHHCCEEE
Confidence 888888888888875211 1111 11223478888877411 135778899999998
Q ss_pred ccCCCcceEEe---CCCcHHHHHHHHHHHHHHHHH
Q 011856 442 APSQFEAGFTS---LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 442 ~~~~~~~~~~~---~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.......+|++ +.+|++|+++++++|++++++
T Consensus 426 ~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 426 DKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 86655678874 667999999999999999864
No 147
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=9.6e-24 Score=206.80 Aligned_cols=330 Identities=17% Similarity=0.116 Sum_probs=208.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
.++|||.++. +.. .++++.+++.+.... ...+++.+...+|.+++++++ +.+.+++++||++|+..+++.. .
T Consensus 3 ~~~i~~~~~~---~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~~~~~~--~ 74 (347)
T 1jg8_A 3 HMMIDLRSDT---VTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--T 74 (347)
T ss_dssp --CEECSCGG---GCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--C
T ss_pred ceEEEecccc---CCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCceEEEecCcHHHHHHHHHHh--c
Confidence 3578988884 333 678888888654321 112335667778889998888 5678999999999999998742 3
Q ss_pred cCCceEEEEeCCCCCCch--hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEc
Q 011856 179 TGRERIIKFEGCYHGHAD--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILE 253 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~e 253 (476)
..+++|++.+++|...+. ......|..+... .. ..+ .-|+++|++.+++. .+++++|+++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNG-------------AMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETT-------------EECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCC-------------ccCHHHHHHHhccccccccCceEEEEe
Confidence 345677776665533222 1223334322211 00 000 01899999998742 1258889888
Q ss_pred ccCCCC-CcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-cccccchhhccCCCCc--hhhhhhhcCCCCcEEE-EE
Q 011856 254 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YG 326 (476)
Q Consensus 254 p~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~~pD--i~t~sK~lg~G~~iG~-~~ 326 (476)
+++|++ |.+.+ .+.+++|.++|++||++||+||+|.- + ..+.. ...+....| ++++||++++ ++|+ ++
T Consensus 140 ~~~npt~G~~~~-~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~--~~G~~~~ 214 (347)
T 1jg8_A 140 NTHNRSGGRVVP-LENIKEICTIAKEHGINVHIDGARIFNASIASGVP--VKEYAGYADSVMFCLSKGLCA--PVGSVVV 214 (347)
T ss_dssp SSBTTTTSBCCC-HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC--SSCEEEE
T ss_pred ccccccCCccCc-HHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC--hHHhcccccEEEEecccccCC--CceEEEE
Confidence 888877 77665 44599999999999999999998741 1 11110 111111123 3469999975 4674 56
Q ss_pred ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEE
Q 011856 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (476)
Q Consensus 327 ~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (476)
+++++++.+..... ...++...+.+.++++..+|+... +. .++..++.+++.+.|+++. ..+. ..+..+.++++
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~~--~~~~-~~~~~~~~~~~ 288 (347)
T 1jg8_A 215 GDRDFIERARKARK-MLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEIG--YSVN-PEDVKTNMVIL 288 (347)
T ss_dssp ECHHHHHHHHHHHH-HHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHHT--CBCC-GGGCCSSEEEE
T ss_pred cCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcC--ceec-cCCCcceEEEE
Confidence 78888776542111 123344456677777777776532 23 4445567788888887752 2111 11345677777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEe--CCCcHHHHHHHHHHHHHHHHHh
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.+.... ....++.+.|.++||.+.+.+...+|++ ..++++|+++++++|+++++++
T Consensus 289 ~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 289 RTDNLK------------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp ECTTSS------------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc------------CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 763210 0125788888999999998765668886 4569999999999999998764
No 148
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.92 E-value=5.7e-24 Score=212.02 Aligned_cols=329 Identities=12% Similarity=0.065 Sum_probs=215.9
Q ss_pred cCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHH
Q 011856 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVL 172 (476)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al 172 (476)
.+|+.|+|..+. .+ .+|++.+++.+++.. .+. ++.+...++.++++++++ ..+ ++++++||++|++.++
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence 356666664432 22 589999988776543 121 133567789999998886 344 7999999999999999
Q ss_pred HHHHhccCCceEEEEeCCCCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEE
Q 011856 173 RLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (476)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (476)
+.+ ..++++|++.+++||+.... .....|..+...+... .+ ..|+++|++.+++. ++++|+
T Consensus 88 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~--~~~~v~ 149 (393)
T 2huf_A 88 CNL--LEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQ-------------SLSLDEIRDALLIH--KPSVLF 149 (393)
T ss_dssp HHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEE
T ss_pred HHH--hCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CC-------------CCCHHHHHHHHhcc--CCcEEE
Confidence 964 34567899999999884211 1122343332221111 00 13899999999742 467788
Q ss_pred EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEec
Q 011856 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 328 (476)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~ 328 (476)
++++++++|.+.+ +++|.++|++||++||+||+|+ + .. ...... ..+|++ +++|.++++..+|+++++
T Consensus 150 ~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~~ 220 (393)
T 2huf_A 150 LTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSFS 220 (393)
T ss_dssp EESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEEC
T ss_pred EEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEEC
Confidence 8888888999988 8899999999999999999985 3 11 111112 235766 567987754445999999
Q ss_pred HHHHHhhcCCC----Ccc---------------ccCC-CCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011856 329 RDIMEMVAPAG----PMY---------------QAGT-LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 329 ~~i~~~l~~~~----~~~---------------~~~t-~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (476)
+++++.+.... +.. ...+ .+.+..+++++.++++.+.+ ++..++++++.+++.+.|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 300 (393)
T 2huf_A 221 HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQ 300 (393)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99998876421 111 0111 23466666777778877643 4567788888888888888
Q ss_pred HHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC-C--Cc
Q 011856 386 DAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HS 456 (476)
Q Consensus 386 ~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~-~--~t 456 (476)
++ ...+..... ..+.++++.+... ....++.+.|+++ ||++.++. ...+|+++ . .+
T Consensus 301 ~~--g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~ 365 (393)
T 2huf_A 301 DA--GFELYADPKDRLSTVTTIKVPQG-------------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNAT 365 (393)
T ss_dssp HT--TCCBSSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCS
T ss_pred Hc--CCeeccCccccCCcEEEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCC
Confidence 75 222211110 1244666665311 0125678888765 99998763 34678876 4 57
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011856 457 SDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~~ 474 (476)
++++++++++|+++++++
T Consensus 366 ~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 366 TERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998764
No 149
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.92 E-value=4.9e-24 Score=212.71 Aligned_cols=333 Identities=11% Similarity=0.021 Sum_probs=202.8
Q ss_pred EEEecccChhhccCCC--CcHHHHHHHHHHH-HhcCC--CC---CCCHHHHHHHHHHHhhCC---CCCe--EEEeCCHHH
Q 011856 100 EYIDYVGSWGPAIIGH--ADDQVLAALGETM-KKGTS--FG---APCLLENVLAEMVISAVP---SIEM--VRFVNSGTE 166 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~l-~~~~~--~~---~~~~~~~~la~~l~~~~~---~~e~--v~~~~sGse 166 (476)
..|||..|...+.-|. .++.|.+|.. .+ +.... |. +..++++++++++..... ..++ +++|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 3577776642233332 4688888876 43 33222 22 235677777777765442 2343 699999999
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCC
Q 011856 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNK 244 (476)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (476)
|+..++++...+.+ +.|++.+++|.++.. .+...|..+...++.. ..++ |+++|++.+++.+
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~ 172 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHVN-MIESRGFNLKYINFFDYNLIDI--------------NYDLFLNDLRNIP 172 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHHH-HHHTTTCEEEEECCEETTTTEE--------------CHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHHH-HHHHcCCeEEEEeccccccCCc--------------CHHHHHHHHHhCC
Confidence 99999986444335 899999999987543 3344444333322200 0111 7999999997532
Q ss_pred CCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc---cchhhc-cCCCCchh---hhhhh
Q 011856 245 GEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDLT---TLGKI 315 (476)
Q Consensus 245 ~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pDi~---t~sK~ 315 (476)
..+++++++. +|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. ...... ....+.++ +|||.
T Consensus 173 -~~~~i~l~~~~~NPTG~~~s~~~-~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 173 -NGSSVILQISCYNPCSVNIEEKY-FDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN 250 (405)
T ss_dssp -SSCEEEECCSSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred -CCeEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence 4566777665 677888776555 999999999999999999999988 4321 111111 12223333 79999
Q ss_pred cC-CCCcEEEEEe---cHHHHHhhcCC-CCccccCCCCCcHHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHH
Q 011856 316 IG-GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQ 382 (476)
Q Consensus 316 lg-~G~~iG~~~~---~~~i~~~l~~~-~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~ 382 (476)
++ .|||+||+++ ++++++.+... .........+.+.+++.++.++|+.- +. ..++++++++++.+.+
T Consensus 251 ~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~ 330 (405)
T 3k7y_A 251 MSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFN 330 (405)
T ss_dssp SCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 8999999853 66666544210 00111122234567777777666521 11 2334456666667777
Q ss_pred HHH----HHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcH
Q 011856 383 GII----DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSS 457 (476)
Q Consensus 383 ~L~----~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~ 457 (476)
.|+ +++....+....+..|.++++.+.. ++++.|.++||++.|++ |++++ .++
T Consensus 331 ~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------------------~~~~~L~~~gV~v~p~~----Ris~a~~~~ 388 (405)
T 3k7y_A 331 KLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------------------KIAEHLKTHHIYIINNG----RINVSGITK 388 (405)
T ss_dssp HHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG------------------GGTTTTTTTTEECCTTS----EEEGGGCCT
T ss_pred HHHhhhhhcCCCCCCccccCCceEEEecCCCH------------------HHHHHHHHCCEeecCCC----eEEEeccCH
Confidence 766 4321000111123344444433211 22345578899999964 88875 589
Q ss_pred HHHHHHHHHHHHHHHH
Q 011856 458 DDIQHTITAAEKVKMR 473 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~ 473 (476)
++|++++++|++++++
T Consensus 389 ~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 389 NNVDYIADKICLSLSQ 404 (405)
T ss_dssp THHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999875
No 150
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=1.7e-24 Score=221.12 Aligned_cols=345 Identities=14% Similarity=0.046 Sum_probs=204.3
Q ss_pred CCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh
Q 011856 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~ 177 (476)
|+.||||.+++++ |+|.+++.+++..+...+.+.+...+|++++++++ +.++++|++||++|++.|++.++.
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~~gt~A~~~al~~~~~ 111 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEEC--CCSHHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHh-CcCcEEEcCCcHHHHHHHHHHHhc
Confidence 5679999877532 88999998888665433334566778888998888 568999999999999999998765
Q ss_pred cc----C--C-ceEEEEeCCCCCCchhHHh-hcCCCCccCCCCCCCCCCCCCCCceeeccC---CCHHHHHHHHhcCC-C
Q 011856 178 FT----G--R-ERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-G 245 (476)
Q Consensus 178 ~~----~--~-~~ii~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~ 245 (476)
.+ + + +.|+.. .||+.+..... ..+..+.....+ ..++. ....++ .|+++|++.+++++ +
T Consensus 112 ~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~d~~~Le~~i~~~~~~ 182 (467)
T 2oqx_A 112 KREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIK--EAFDT-----GVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_dssp HHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCT--TTTCT-----TSCCTTTTCBCHHHHHHHHHHHCGG
T ss_pred cccccCCCCccceEEec--ccccccchhhhhccCcceeecccc--ccccC-----CCCCCccCCcCHHHHHHHHHhcCCC
Confidence 42 3 2 556654 57865433322 222221110000 00000 000111 28999999997532 3
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-cccc---cchhhccCCCCch--
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAY---GGAQEYFGVTPDL-- 309 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~---~~~~~~~g~~pDi-- 309 (476)
++++|+++++++++|...++.+++++|+++|++||++||+|++|.. . ..|. .+..+.+ ..+|+
T Consensus 183 ~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~ 261 (467)
T 2oqx_A 183 NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLA 261 (467)
T ss_dssp GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEE
T ss_pred ceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEE
Confidence 6889999998887644556677899999999999999999966532 1 1111 1110000 11343
Q ss_pred hhhhhhcCCCCcE-EEEEecHH-HHHhhcCCCCc---c-ccCCCCCcHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 310 TTLGKIIGGGLPV-GAYGGRRD-IMEMVAPAGPM---Y-QAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 310 ~t~sK~lg~G~~i-G~~~~~~~-i~~~l~~~~~~---~-~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
.+++|.++. |+ |+++++++ +++.+...... . ...+++.......+++ ..++...+++..++..++.+++.+
T Consensus 262 ~s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~ 339 (467)
T 2oqx_A 262 MSAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339 (467)
T ss_dssp EESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHH
Confidence 478898863 54 56677766 44333210011 0 1112232222222222 222322222456677788889999
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEec--CCCcCchhhcccchHHHHHHHHHH-HHCCeEeccCC--------------
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-------------- 445 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~-------------- 445 (476)
.|+++ .+.+ . +..|.++++.+.. .... .+.....++.+.| .++||.+.+++
T Consensus 340 ~L~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~ 407 (467)
T 2oqx_A 340 GLEEI--GVVC--Q-QAGGHAAFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQL 407 (467)
T ss_dssp HHHHT--TCCE--E-EECSSCEEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBC
T ss_pred HHHHC--CCee--e-cCCceEEEEechhhcccCC-------cccccHHHHHHHHHHhcCceecccccccccccccccccc
Confidence 98875 2332 2 3456667776632 1100 0000135677888 78999998743
Q ss_pred ---CcceEEeCC---CcHHHHHHHHHHHHHHHHHh
Q 011856 446 ---FEAGFTSLA---HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ---~~~~~~~~~---~t~e~i~~~~~~l~~~~~~~ 474 (476)
...+|+++. +|+++|++++++|+++++++
T Consensus 408 ~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp CCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred cCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 145777655 89999999999999998653
No 151
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.91 E-value=1.8e-23 Score=209.03 Aligned_cols=320 Identities=13% Similarity=0.080 Sum_probs=211.1
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~ 178 (476)
+.||||..+... ++ |++.+++.++++++. + .+.+...++.+.+++++ +.+.+++++||++|++.+++.++ .
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-y-~~~~~~~~l~~~la~~~-~~~~~v~~~~Gt~a~~~~l~~~~-~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-Y-LLGPELEGFEAEFAAYC-ETDHAVGVNSGMDALQLALRGLG-I 100 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHT-TSSEEEEESCHHHHHHHHHHHTT-C
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-C-CCchhHHHHHHHHHHHH-CCCeEEEecCHHHHHHHHHHHhC-C
Confidence 678999887542 32 999999999987642 2 24577788999999998 45588999999999999999532 3
Q ss_pred cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
.+++.|++.+++|++.. ..+...|..+...+.....+ ..|+++|++.+++ ++++|+++ ++
T Consensus 101 ~~gd~vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~---n~ 160 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASW-LAVSATGATPVPVEPHEDHP-------------TLDPLLVEKAITP---RTRALLPV---HL 160 (399)
T ss_dssp CTTCEEEEESSSCTHHH-HHHHHTTCEEEEECBCSSSS-------------SBCHHHHHHHCCT---TEEEECCB---CG
T ss_pred CCcCEEEECCCccHHHH-HHHHHCCCEEEEEecCCCCC-------------CcCHHHHHHhcCC---CCeEEEEe---CC
Confidence 45678999999998843 34444454333222110000 1289999999864 57777743 34
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc--cccccchhhccCCCCchhhh----hhhcCC-CCcEEEEEec-HH
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RD 330 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pDi~t~----sK~lg~-G~~iG~~~~~-~~ 330 (476)
+|.+.+ +++|.++|++||++||+||+|+.+ ..+. .++..+|++++ ||.+++ | ++|+++++ ++
T Consensus 161 tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~ 230 (399)
T 2oga_A 161 YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPE 230 (399)
T ss_dssp GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHH
T ss_pred cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHH
Confidence 677777 999999999999999999999633 2221 23333687765 599996 8 99999886 78
Q ss_pred HHHhhcC---CCCc------cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eee
Q 011856 331 IMEMVAP---AGPM------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYI 400 (476)
Q Consensus 331 i~~~l~~---~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~ 400 (476)
+++.+.. .+.. ..+.++..+++.++++.++++.++ ++.++.+++.+++.+.|.++. ...+.... .+.
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~ 307 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP-GIGLPVTAPDTD 307 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT-TCBCCCCCTTEE
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-CccccCCCCCCc
Confidence 8776542 1100 012234568899988888887553 355666666666666665431 11111000 111
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe-
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS- 452 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~- 452 (476)
+.++.+.+... ...++.+.|.++||.+.+... ..+|++
T Consensus 308 ~~~~~~~~~~~--------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~ 373 (399)
T 2oga_A 308 PVWHLFTVRTE--------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPI 373 (399)
T ss_dssp CCCSSEEEECS--------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECC
T ss_pred ceeEEEEEECC--------------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccC
Confidence 22212322211 125788889999999886431 236764
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHh
Q 011856 453 -LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 -~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
..+|++|+++++++|+++++++
T Consensus 374 ~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 374 GPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp STTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999998764
No 152
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.91 E-value=5.7e-23 Score=203.51 Aligned_cols=321 Identities=16% Similarity=0.127 Sum_probs=206.8
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~-----~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~a 171 (476)
|+|+.++ +..+|.+.+++.+++.+...+. + ..+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 5666544 3468999999999997632111 1 13455688999999886 457899999999999999
Q ss_pred HHHHHh--ccCCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 172 LRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 172 l~~ar~--~~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.... ..+++.|++.++.|++........ .|..+...+... .+ .-|+++|++.+++ ++
T Consensus 77 ~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4hvk_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC-CC-------------CcCHHHHHHHhcc---Cc
Confidence 995421 145677888777777654433322 233222211110 00 0189999999864 67
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~ 325 (476)
++|+++++++++|.+.+ +++|.++|++||+ ||+||+|+.-.. .......+ +|++ +++|.+| +..+|++
T Consensus 140 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~~~~~--~~~~~~~~--~d~~~~s~~K~~g-~~g~g~~ 209 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATASVGQI--EVDVEKIG--ADMLTISSNDIYG-PKGVGAL 209 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTTBTTB--CCCHHHHT--CSEEEEESGGGTS-CTTCEEE
T ss_pred eEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHhcCCC--CCCchhcC--CCEEEEeHHHhcC-CCceEEE
Confidence 89999999999999988 9999999999999 999999952110 11122223 4555 6779765 2248888
Q ss_pred EecHHHHHhhcCCC----CccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-
Q 011856 326 GGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG- 398 (476)
Q Consensus 326 ~~~~~i~~~l~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~- 398 (476)
+++++. .+.+.. ........+.++..+++..++++.+.+ ++..++++++.+++.+.|+++ +......
T Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~ 283 (382)
T 4hvk_A 210 WIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNGH 283 (382)
T ss_dssp EEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECSC
T ss_pred EEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCC
Confidence 777664 222110 001112344577888888888876543 456666667777777666543 2111111
Q ss_pred ---eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceEEe
Q 011856 399 ---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS 452 (476)
Q Consensus 399 ---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~~~ 452 (476)
..+.++.+.+... ...++.+.|.++||.+.++. ...+|++
T Consensus 284 ~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~ 349 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSYI--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEETTC--------------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEE
T ss_pred ccccCCCEEEEEECCC--------------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEE
Confidence 1133555555211 12567888999999998753 2456776
Q ss_pred C--CCcHHHHHHHHHHHHHHHHHh
Q 011856 453 L--AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 453 ~--~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+ .+|++|+++++++|+++++++
T Consensus 350 ~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 350 LGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 468999999999999998764
No 153
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.91 E-value=3.1e-23 Score=213.21 Aligned_cols=333 Identities=13% Similarity=0.103 Sum_probs=207.5
Q ss_pred CcHHHHHHHHHHHHhc---CCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHHHhc-cCCce
Q 011856 116 ADDQVLAALGETMKKG---TSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~---~~~~~-----~~~~~~~la~~l~~~~~---~~e~v~~~~sGseA~~~al~~ar~~-~~~~~ 183 (476)
.++++++++.+.+.+. ....| ..+++.++++++.+..+ .+++|++++||++|+..+++.. . ..++.
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~~~gd~ 184 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL--IRNEKDG 184 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH--CCSTTEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH--cCCCCCE
Confidence 4677888888888762 22222 23677778887765532 5789999999999999999952 2 35678
Q ss_pred EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCC
Q 011856 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G 260 (476)
|++.+++|+++... +...|..+..+++....+. ..|+++|++.+++. +.++++|+++..+|++|
T Consensus 185 Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG 251 (500)
T 3tcm_A 185 ILVPIPQYPLYSAS-IALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251 (500)
T ss_dssp EEEEESCCTHHHHH-HHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTC
T ss_pred EEEeCCCcHhHHHH-HHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCc
Confidence 88888888875443 3444443332221111100 12899999999751 22466666555566788
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc-c-cchh----hccCC-CC--c-hh--hhhhhc-C-CCCcEEEE
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y-GGAQ----EYFGV-TP--D-LT--TLGKII-G-GGLPVGAY 325 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~-~~~~----~~~g~-~p--D-i~--t~sK~l-g-~G~~iG~~ 325 (476)
.+.+.++ +++|.++|++||+++|+||+|.++ ..+ . .... ..++. .. + ++ +|||++ | .|+|+||+
T Consensus 252 ~~~s~~~-l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 330 (500)
T 3tcm_A 252 QVLAEEN-QYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYF 330 (500)
T ss_dssp CCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEE
T ss_pred ccCCHHH-HHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEE
Confidence 8776555 999999999999999999999877 422 1 1111 12221 12 2 33 799999 6 69999999
Q ss_pred Ee---cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHH-----------HhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 326 GG---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 326 ~~---~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
++ ++++++.+.. . ...+++.++++++++..+++ ..+. +.+.++++++.+++.+.|+++
T Consensus 331 ~~~~~~~~~~~~l~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 331 EITGFSAPVREQIYK---I-ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEESCCTTHHHHHHH---H-HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEeCCCHHHHHHHHH---H-HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 87 8889888763 1 12345678888888877774 1121 445556666666776666653
Q ss_pred cCCceEeeeece-eEEEEEecCCCcCchhh-cccchHHHHHH-HHHHHHCCeEeccCC-------CcceEEeCCCcHHHH
Q 011856 391 AGHAICGGYISG-MFGFFFTEGPVYNFEDA-KKSETTKFARF-YRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDI 460 (476)
Q Consensus 391 ~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~Gv~~~~~~-------~~~~~~~~~~t~e~i 460 (476)
+.+......|. ++++.+..+. ...... ....... ..+ .+.|.++||++.|+. ...+|+++.++++++
T Consensus 404 -~g~~~~~~~g~~~~~~~~~lp~-~~~~~~~~~g~~~~-~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i 480 (500)
T 3tcm_A 404 -EGITCNEAEGAMYVFPQICLPQ-KAIEAAKAANKAPD-AFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKI 480 (500)
T ss_dssp -TTEECCCCCBTTEECCEECCCH-HHHHHHHHHTSCHH-HHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTH
T ss_pred -CCcEEecCCeEEEEeeeecCch-hhHHHHHhcCCCcH-HHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHH
Confidence 22222333444 4443332110 000000 0000011 223 355567899999763 224789888999999
Q ss_pred HHHHHHHHHHHHHh
Q 011856 461 QHTITAAEKVKMRF 474 (476)
Q Consensus 461 ~~~~~~l~~~~~~~ 474 (476)
++++++|+++++++
T Consensus 481 ~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 481 PAVISRFTVFHEAF 494 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 154
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.91 E-value=3.1e-23 Score=207.32 Aligned_cols=285 Identities=13% Similarity=0.042 Sum_probs=192.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~ 212 (476)
++.+...+++++++++++ .+++++++||++|+..+++.+ ..+++.|++.++.||+...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLER-GEAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-------- 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC--------
Confidence 367888999999999884 458888899999999999953 3456788888888887544331 22222
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
.+..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+
T Consensus 130 -----------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 130 -----------NVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp -----------EEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -----------EEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3556667799999999863 6899999999999999998 999999999999999999999643
Q ss_pred cccccchhhccCCCCchhhhhhhcC-CCCcE-EEEEecHHHHH-hhcCCCCccccC-CCCCcHHHHHHHHHHHHHhcCCC
Q 011856 293 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~i-G~~~~~~~i~~-~l~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~~ 368 (476)
..+.. ..++....+.+++|.++ +|+|+ |++++++++++ .+.. ..... +.+.+++.++++.++|+.+ +.
T Consensus 192 ~~~~~---~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 263 (398)
T 2rfv_A 192 YCQQP---LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV---GLKDITGGCMSPFNAWLTLRGVKTL--GI 263 (398)
T ss_dssp TTCCG---GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT---HHHHTTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ccCCc---hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHhhhhhH--HH
Confidence 11111 12333223358999998 48898 99999999887 5552 22333 4567899999988888643 33
Q ss_pred HHHHHHHHHHHHHHHHHHHh----------hhcCCce----EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 369 TYEYLNKITGELTQGIIDAG----------KKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~----------~~~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
..++..++.+.+.+.|++.. .+++... ..++.|.++++++.+. ......+.+.+
T Consensus 264 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~~ 331 (398)
T 2rfv_A 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG------------LEAGRRMINSV 331 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC------------HHHHHHHHHhC
Confidence 44556666666666666531 0011000 0124688888887421 12233444444
Q ss_pred HHCCeEeccCC---------------------------CcceEEe--CCCcHHHHHHHHHHHHH
Q 011856 435 LEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 435 ~~~Gv~~~~~~---------------------------~~~~~~~--~~~t~e~i~~~~~~l~~ 469 (476)
...|+.+.++. ...+|++ ..+++++++.++++|++
T Consensus 332 ~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 332 ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 44566655441 2356665 55678887777777764
No 155
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=3.7e-23 Score=206.94 Aligned_cols=326 Identities=13% Similarity=0.066 Sum_probs=201.8
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CC----CC-CCHHHHH----HHHHHHhhCCCCCeEEEeCCHHHHH
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF----GA-PCLLENV----LAEMVISAVPSIEMVRFVNSGTEAC 168 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~----~~-~~~~~~~----la~~l~~~~~~~e~v~~~~sGseA~ 168 (476)
.++|+.++ +++ +|++.+|+.+++.+.. .+ .+ ......+ ++++++++++.....++++||++|+
T Consensus 25 ~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 25 KIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp SEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred ceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 46777655 555 8999999999885321 11 01 1122233 4468888874333445567889999
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCC
Q 011856 169 MGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (476)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (476)
+.+++.+ ..+++.|++.++.|++..... +...|.+.....++..+. -...|+++|++.+++. +
T Consensus 99 ~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~i~~~--~ 163 (405)
T 2vi8_A 99 MAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-----------THVIDYDDVREKARLH--R 163 (405)
T ss_dssp HHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTT-----------TCSBCHHHHHHHHHHH--C
T ss_pred HHHHHHh--cCCCCEEEEecccccchhcccchhhhccceeEEEecccccc-----------cCCcCHHHHHHHHHhc--C
Confidence 9999964 445677888776655432211 111121000000010000 0012899999999742 3
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCC-CCchh--hhhhhcCCCCcEE
Q 011856 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVG 323 (476)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pDi~--t~sK~lg~G~~iG 323 (476)
+++|+++|.+ .|...+ +++|+++|++||++||+||+|+....+... ...++ .+|++ +++|.++++.. |
T Consensus 164 ~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~~~~di~~~s~sK~~~g~~g-G 234 (405)
T 2vi8_A 164 PKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNPVPYAHFVTTTTHKTLRGPRG-G 234 (405)
T ss_dssp CSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCSTTTCSEEEEESSSTTCCCSC-E
T ss_pred CeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEccccccccccCc--CCCccccCCEEEEeccccCCCCCC-e
Confidence 5677775533 243334 899999999999999999999721221110 11111 46776 79999985433 9
Q ss_pred EEEecHHHHHhhcCCCCccccCCCC-CcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-e
Q 011856 324 AYGGRRDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-G 398 (476)
Q Consensus 324 ~~~~~~~i~~~l~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~ 398 (476)
++++++++++.+.+. ....+++ .++..++++.++++.+.+ +++.++++++.+++.+.|+++ ++.... .
T Consensus 235 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 307 (405)
T 2vi8_A 235 MILCQEQFAKQIDKA---IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTLVSGG 307 (405)
T ss_dssp EEEECHHHHHHHHHH---HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGS
T ss_pred EEEEcHHHHHHHHhh---hcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCeEecCC
Confidence 999999998877531 1112233 366777777788887654 567788888888888888775 221111 1
Q ss_pred eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----------CcceEEeCC------CcHHHHHH
Q 011856 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------HSSDDIQH 462 (476)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~~~~~~~------~t~e~i~~ 462 (476)
+.+.++++.+..... ....+.+.|.++||.+.++. ...+|+++. ++++++++
T Consensus 308 ~~~~~~~~~~~~~~~------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 308 TDNHLLLVDLRPQQL------------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp CSSSEEEEECGGGTC------------CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred CCceEEEEEccCCCC------------CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence 357777887742100 12467788889999998752 234677544 68999999
Q ss_pred HHHHHHHHHHHh
Q 011856 463 TITAAEKVKMRF 474 (476)
Q Consensus 463 ~~~~l~~~~~~~ 474 (476)
++++|+++++++
T Consensus 376 ~~~~l~~~~~~~ 387 (405)
T 2vi8_A 376 IAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhcc
Confidence 999999988653
No 156
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.91 E-value=3.3e-23 Score=203.17 Aligned_cols=310 Identities=17% Similarity=0.073 Sum_probs=207.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (476)
.+|++.+++.+++.. +.++ ..+...++.++++++++ ..+++++++||++|++.+++.. ..++++|++.+++|++
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~ 87 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFS 87 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHH
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchh
Confidence 579999998876642 1211 12445788888888886 3468999999999999999964 3456789999988888
Q ss_pred Cch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHH
Q 011856 194 HAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (476)
Q Consensus 194 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (476)
... ..+...|..+...+... .+ ..|+++|++ +++++|+++++++++|.+.+ +++|
T Consensus 88 ~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i 143 (352)
T 1iug_A 88 ERFYEIALEAGLVVERLDYPY-GD-------------TPRPEDVAK------EGYAGLLLVHSETSTGALAD----LPAL 143 (352)
T ss_dssp HHHHHHHHHTTCEEEEEECCT-TC-------------CCCTTTSCC------SSCSEEEEESEETTTTEECC----HHHH
T ss_pred HHHHHHHHHcCCceEEEeCCC-CC-------------CCCHHHHhc------cCCcEEEEEEecCCcceecC----HHHH
Confidence 541 11122344332221111 00 014555544 25678888888888999988 9999
Q ss_pred HHHHHHh--CCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCC------C--
Q 011856 273 RRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA------G-- 339 (476)
Q Consensus 273 ~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~------~-- 339 (476)
.++|++| |++||+||+|+ + .. ......+ .+|++ +++|.++++.++|++++++++++.+... .
T Consensus 144 ~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARE 218 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred HHHHHhhCCCCEEEEECCcc-ccCc--ceecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHH
Confidence 9999999 99999999995 3 11 1111222 35665 5779877655689999999987652210 0
Q ss_pred --Cc-cccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCC
Q 011856 340 --PM-YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 413 (476)
Q Consensus 340 --~~-~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~ 413 (476)
.. .....++.|+.+++++.++++.+.+ ++..++++++.+++.+.|+++ ++....+ ..+.++++.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-- 292 (352)
T 1iug_A 219 LKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLPEG-- 292 (352)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECCTT--
T ss_pred HhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcCCC--
Confidence 00 0112345678888888888887654 356677777888888888764 2211111 2567777776421
Q ss_pred cCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCC--CcHHHHHHHHHHHHHHHHHhh
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~--~t~e~i~~~~~~l~~~~~~~~ 475 (476)
....++.+.|.++||.+.++. ...+|+++. ++++++++++++|++++++++
T Consensus 293 -----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 293 -----------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp -----------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 012568888999999998763 346788654 589999999999999988753
No 157
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.91 E-value=1.2e-22 Score=209.76 Aligned_cols=319 Identities=14% Similarity=0.070 Sum_probs=201.9
Q ss_pred CcHHHHHHHHHHHHhcC---CCC---C--CCHHHHHHHHHHHhhCCCC---CeE--EEeCCHHHHHHHHHHHHHhcc---
Q 011856 116 ADDQVLAALGETMKKGT---SFG---A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFT--- 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~---~~~---~--~~~~~~~la~~l~~~~~~~---e~v--~~~~sGseA~~~al~~ar~~~--- 179 (476)
.++.+.+++.+++.... .+. + ..+++.+++++++++++.. +++ +|++||++|++.+++.++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 56777777777765421 111 1 1356677888889988632 677 999999999999999876543
Q ss_pred ---CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 180 ---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 180 ---~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
.++.|++..++|++ +...+...|..+...+...... -|+++|++.+++ ++++|++++.+
T Consensus 188 ~g~~~d~Vi~~~~~~~~-~~~~~~~~G~~v~~v~~~~~~~--------------~d~~~Le~~i~~---~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAA-FDKAAQYFGIKLVRTPLDADYR--------------ADVAAMREAITP---NTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTH-HHHHHHHHTCEEEEECBCTTSC--------------BCHHHHHHHCCT---TEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchH-HHHHHHHcCCeeEEeeeCCCCC--------------CCHHHHHHHhcc---CCEEEEEeCCC
Confidence 12677777777766 4444444454333222111000 189999999974 68889999988
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-----ccc---cchhhccCCCCchhhhhhhcCCCCcEEEEEe
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-----~g~---~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~ 327 (476)
+++|.+.+ +++|+++|++||++||+||+|++| . .|. .+.....|+...+.+++|.+.+|+++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 88999988 999999999999999999999876 3 121 2222334443333467799888899999988
Q ss_pred cHHHHHhhcCC-------C----CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 328 RRDIMEMVAPA-------G----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 328 ~~~i~~~l~~~-------~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
+++.+...... + ....+++...+.+++.+++..+....-+++.+++.++.+++.+.|+++. ++ ..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~-~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIP---SL-KI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TC-EE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCC---Ce-EE
Confidence 87765443210 0 0001112112233444444433322125677788888888888887631 11 11
Q ss_pred eeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-CcceEEe---CCCcHHHHHHHHHHHHHHHH
Q 011856 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS---LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~---~~~t~e~i~~~~~~l~~~~~ 472 (476)
+.....++++..... ...++.+.|+++||++.... .+.++++ ...+++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVASDEL--------------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEECSSS--------------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeCCCC--------------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 112233555543110 12578889999999884433 2345664 33467999999999999987
Q ss_pred Hh
Q 011856 473 RF 474 (476)
Q Consensus 473 ~~ 474 (476)
++
T Consensus 468 ~~ 469 (514)
T 3mad_A 468 QV 469 (514)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 158
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.91 E-value=2.3e-23 Score=207.89 Aligned_cols=315 Identities=13% Similarity=0.117 Sum_probs=211.0
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~-~~e-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (476)
.++++.+++.+++.. .+. ++.....++.+.++++++ ..+ ++++++||++|++.+++.. ..++++|++.+++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 468888887665432 121 122446789999998886 455 7999999999999999963 445678999999998
Q ss_pred CCch-hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
+... ......|..+...+... .+ ..|+++|++.++++ ++++|+++++++++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DR-------------PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TS-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 8431 13333444332221111 00 13899999999752 4677888888888899988 889
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecHHHHHhhcCCC----Ccc--
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 342 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~~i~~~l~~~~----~~~-- 342 (476)
|.++|++||++||+||+|. + .. ..... ...+|+++ ++|.++++.++|++++++++++.+...+ ..+
T Consensus 165 i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence 9999999999999999996 3 11 11111 22357665 5599987667899999999888774311 100
Q ss_pred --------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee--eecee
Q 011856 343 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGM 403 (476)
Q Consensus 343 --------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~ 403 (476)
....++.+..++.++.++|+.+.+ ++..++++++.+++.+.|+++. ..+..... ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG--LDIFVKDPRHRLPTV 317 (396)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--CCBSSCSGGGBCTTE
T ss_pred hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC--CeeccCCccccCCce
Confidence 112234577788888888887632 4567788888888888888762 22211110 12346
Q ss_pred EEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeEeccCC----CcceEEeC---CCcHHHHHHHHHHHHHHHHHh
Q 011856 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~~---~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+++.+... ....++.+.|+++ ||.+.++. ...+|+++ .++++++++++++|+++++++
T Consensus 318 ~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 318 TGIMIPKG-------------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp EEEECCTT-------------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 66665311 0125678888875 99998753 34678876 358999999999999998764
No 159
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.91 E-value=5.2e-23 Score=211.29 Aligned_cols=332 Identities=10% Similarity=0.036 Sum_probs=202.6
Q ss_pred CcHHHHHHHHHHHHhc---C--CCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHHHHhccCC--
Q 011856 116 ADDQVLAALGETMKKG---T--SFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR-- 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~---~--~~~---~~~~~~~~la~~l~~~~~----~~e~v~~~~sGseA~~~al~~ar~~~~~-- 181 (476)
.+..+.+++.+.+.+. . .|+ +..+++.++++++.+..+ .+++|++++|+++|+..++++ +..+
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~---l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKI---LVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHH---HCCCCG
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHH---HcCCCC
Confidence 3667777778777752 1 122 234778888988887652 578999999999999999994 3332
Q ss_pred ---ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCC--CeEEEEEcccC
Q 011856 182 ---ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVV 256 (476)
Q Consensus 182 ---~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~a~vi~ep~~ 256 (476)
+.|++..+.|..+.. .+...|..+..++.....++ .-|+++|++.+++... ++++|+++..+
T Consensus 179 ~~~d~Vlv~~p~y~~~~~-~~~~~g~~~v~~~~~~~~~~------------~~d~~~le~~l~~~~~~~~~k~i~l~np~ 245 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSA-VISELDAIQVNYYLDEENCW------------ALNVNELRRAVQEAKDHCDPKVLCIINPG 245 (498)
T ss_dssp GGSEEEEEEESCCTHHHH-HHHHTTCEEEEEECBGGGTT------------BCCHHHHHHHHHHHTTTSEEEEEEEESSC
T ss_pred CCCCEEEEeCCCchhHHH-HHHHcCCEEEEeeccccccC------------CCCHHHHHHHHHhhhccCCCeEEEEECCC
Confidence 478888888876543 33344443222111100000 0189999999975321 36666666556
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccc--cchhhcc--CCC------Cch---hhhhhhc-C-CCC
Q 011856 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYF--GVT------PDL---TTLGKII-G-GGL 320 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~~~~--g~~------pDi---~t~sK~l-g-~G~ 320 (476)
|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+. ....... +.. .++ .+|||++ | +|+
T Consensus 246 NPTG~v~s~~~-l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~ 324 (498)
T 3ihj_A 246 NPTGQVQSRKC-IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY 324 (498)
T ss_dssp TTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS
T ss_pred CCCCCcCCHHH-HHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc
Confidence 67888776555 999999999999999999999877 4321 1111110 011 112 2799999 5 799
Q ss_pred cEEEEE---ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHH-----------HhcC-CCHHHHHHHHHHHHHHHHH
Q 011856 321 PVGAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 321 ~iG~~~---~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~ 385 (476)
|+||++ .++++++.+.. . .....+.+.+++.++.++++ .+++ +...++++++.+++.+.|+
T Consensus 325 R~G~~~~~~~~~~l~~~l~~---~-~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 325 RGGYMEVINLHPEIKGQLVK---L-LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp CCEEEEEESCCHHHHHHHHH---H-HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCHHHHHHHHH---H-HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 68999888763 1 12344667788877666553 1111 2344555666666666665
Q ss_pred HHhhhcCCceEeeeece-eEEEEEecCCCcCchhhc-ccchHHHHH-HHHHHHHCCeEeccCC-------CcceEEeCCC
Q 011856 386 DAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAK-KSETTKFAR-FYRGMLEEGVYFAPSQ-------FEAGFTSLAH 455 (476)
Q Consensus 386 ~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~Gv~~~~~~-------~~~~~~~~~~ 455 (476)
++ +.+......|. ++++.+..+. ..+.... ..... ... +.+.|.++||++.|+. ...+|+++.+
T Consensus 401 ~~----~g~~~~~p~gg~~~~~~l~~p~-~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~ 474 (498)
T 3ihj_A 401 QV----PGIHCNPLQGAMYAFPRIFIPA-KAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP 474 (498)
T ss_dssp TS----TTEECCCCCBSSEECCEECCCH-HHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS
T ss_pred cC----CCcEecCCCeEEEEEEeccCch-hhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC
Confidence 43 22222334444 4444443110 0000000 00000 112 3445567899998752 2367899889
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011856 456 SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~ 474 (476)
+++++++++++|.+++++.
T Consensus 475 ~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 475 PVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 160
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.91 E-value=3.6e-22 Score=198.02 Aligned_cols=320 Identities=16% Similarity=0.133 Sum_probs=209.1
Q ss_pred EEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC-CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011856 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~-~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~a 171 (476)
|+|+.++ ++.+|.|.+++.+++.+.. ... ++ .+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6676655 4679999999999987621 111 21 2456788899998886 456999999999999999
Q ss_pred HHHHHh-c-cCCceEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCe
Q 011856 172 LRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (476)
Q Consensus 172 l~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (476)
++.... + .+++.|++.+++|++........ .|..+...+... .+ ..|+++|++.+++ ++
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CC-------------ccCHHHHHHHhcC---CC
Confidence 996541 1 35678888888887754443322 233222211110 00 0279999999864 57
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEE
Q 011856 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGA 324 (476)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~ 324 (476)
++|+++++++++|.+.+ +++|.++|++||++ |+||+|. + .. ......+ .+|++ +++|.+|. ..+|+
T Consensus 140 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~--~~~~~~~--~~di~~~s~sK~~g~-~g~G~ 208 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYGP-KGVGA 208 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB--CCCHHHH--TCSEEEEETGGGTCC-SSCEE
T ss_pred eEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc--ccCcccc--CCCEEEeehHHhcCC-CceEE
Confidence 88999999899999998 99999999999999 9999996 3 11 1111222 35665 57897652 13799
Q ss_pred EEecHHHHHhhcCCCC----ccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee
Q 011856 325 YGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (476)
Q Consensus 325 ~~~~~~i~~~l~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (476)
++++++. .+.+... .......+.++..+.++.++++.+.+ ++..++++++.+++.+.|+++ +......
T Consensus 209 ~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~ 282 (382)
T 4eb5_A 209 LWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNG 282 (382)
T ss_dssp EEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECS
T ss_pred EEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CCeEEeC
Confidence 9888763 1221100 01122334567777777788876654 445566666667776666543 2111111
Q ss_pred e----eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----------------------CcceEE
Q 011856 399 Y----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFT 451 (476)
Q Consensus 399 ~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~~~ 451 (476)
. .+.++++.+... + ..++.+.|.++||.+.++. ...+|+
T Consensus 283 ~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (382)
T 4eb5_A 283 HPEKRLPNNVNVRFSYI-----------E---GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLL 348 (382)
T ss_dssp CSSSBCTTEEEEEETTS-----------C---HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEE
T ss_pred CcccCCCCEEEEEeCCc-----------C---HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEE
Confidence 1 255666666310 1 2567888889999998753 245788
Q ss_pred eCC--CcHHHHHHHHHHHHHHHHHh
Q 011856 452 SLA--HSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 452 ~~~--~t~e~i~~~~~~l~~~~~~~ 474 (476)
++. ++++++++++++|+++++++
T Consensus 349 ~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 349 TLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 765 69999999999999998764
No 161
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.90 E-value=1.4e-22 Score=204.78 Aligned_cols=332 Identities=13% Similarity=0.065 Sum_probs=200.7
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCC---CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~---~~-----~~~~~~la~~l~~~~~-~~e~v~~~~sGseA 167 (476)
++..|+|+.++ ++.+|.+.+++.+++.+...+. +. .+...++.++++++++ ..++++|++||++|
T Consensus 17 ~~~~~Ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNAT------TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTC------CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCcc------CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 56788887655 2579999999999987632111 11 1234688888888886 45799999999999
Q ss_pred HHHHHHHHH-hc-----cCCceEEEEeCCCCCCch----------------hHHhhcCCCCccCCCCCCCCCCCCCCCce
Q 011856 168 CMGVLRLAR-AF-----TGRERIIKFEGCYHGHAD----------------PFLVKAGSGVATLGLPDSPGVPKGATYET 225 (476)
Q Consensus 168 ~~~al~~ar-~~-----~~~~~ii~~~~~yhg~~~----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 225 (476)
++.+++.+. .+ ..+++|++.+++||++.. ......|..+...+.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~--------- 161 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNG--------- 161 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTS---------
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccC---------
Confidence 999999653 11 256789999999988520 11111233222221110001
Q ss_pred eeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEeccccCcccc
Q 011856 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLA 295 (476)
Q Consensus 226 ~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g----------~llI~DEv~~g~r~g 295 (476)
..|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++|| ++||+||+|......
T Consensus 162 ----~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~ 230 (432)
T 3a9z_A 162 ----QVEVEDILAAVRP---TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR 230 (432)
T ss_dssp ----SCCHHHHHHTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC
T ss_pred ----CcCHHHHHHhccC---CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc
Confidence 0278999988863 6889999999999999999 899999999999 999999999532221
Q ss_pred ccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHH-HHhhcCCC---C-ccccCCCCCcHHHHHHHHHHHHHhcC--
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAPAG---P-MYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i-~~~l~~~~---~-~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (476)
.... ...+|++ +++|.+ |+++|++++++++ .+.+.+.. . .....+++.|+++++++.++++.+++
T Consensus 231 --~~~~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~ 304 (432)
T 3a9z_A 231 --VDVE--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENC 304 (432)
T ss_dssp --CCHH--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --cChh--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhH
Confidence 1111 1246765 579977 4579999998875 33332100 0 01223456788888888888887654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hhcCCce---EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec
Q 011856 367 PGTYEYLNKITGELTQGIIDAG-KKAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 442 (476)
++..++++++.+++.+.|+++. ....+.. .....+.++.+.+.+... +. ..+.+.+ +|+++.
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~l--~~i~~~ 370 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------RG---YMVLAQC--QTLLAS 370 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------CH---HHHHHHC--SSEECB
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------cH---HHHHHHh--cCeEEe
Confidence 5677888888888888888752 1111000 012345566676643110 11 2233322 233332
Q ss_pred cC------------------C------CcceEEeCCC--cHHHHHHHHHHHHHHHHHh
Q 011856 443 PS------------------Q------FEAGFTSLAH--SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 443 ~~------------------~------~~~~~~~~~~--t~e~i~~~~~~l~~~~~~~ 474 (476)
.+ + ...+|+++.. |++|+++++++|+++++++
T Consensus 371 ~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 371 VGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp SSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 21 1 1457886554 8999999999999998765
No 162
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.90 E-value=3e-22 Score=201.61 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCC----------CHHHHHHH-HHHHhhCCCCCeE-EEeCCHHHHHHHHHHHHHhccCCceE
Q 011856 117 DDQVLAALGETMKKGTSFGAP----------CLLENVLA-EMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~----------~~~~~~la-~~l~~~~~~~e~v-~~~~sGseA~~~al~~ar~~~~~~~i 184 (476)
+|+|.+++.+++.+....+++ .+...+++ +++++.+ +.+.+ ++++||++|++.+++.+ ..+++.|
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~v~~~~Gs~a~~~al~~~--~~~gd~V 121 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF-NAGHANVQPHSGAQANGAVMLAL--AKPGDTV 121 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh-CCCCceeecCchHHHHHHHHHHc--cCCCCEE
Confidence 899999999988542111111 12334555 6666666 55555 45999999999999864 4567788
Q ss_pred EEEeCCCCCCc-hhHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc-ccCCCCCc
Q 011856 185 IKFEGCYHGHA-DPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE-PVVGNSGF 261 (476)
Q Consensus 185 i~~~~~yhg~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e-p~~~~~G~ 261 (476)
++.+++|++.. .... ...+..+....++.... . -.-|+++|++.+++. ++++|+++ |++ |.
T Consensus 122 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~v~~~~~~~---~~ 185 (425)
T 3ecd_A 122 LGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD--------T---MLIDYDQVEALAQQH--KPSLIIAGFSAY---PR 185 (425)
T ss_dssp EEECC------------------CEEEEECCCTT--------T---SSCCHHHHHHHHHHH--CCSEEEEECSCC---CS
T ss_pred EEcccccccceecchhhhhcccceeeeecCCCcc--------c---CccCHHHHHHHHhhc--CCcEEEEccccC---CC
Confidence 98888888732 2221 12222111101110000 0 011899999999742 46677776 443 33
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEec-HHHHHhhc
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVA 336 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~-~~i~~~l~ 336 (476)
..+ +++|+++|++||++||+||+| .|+ +.+..... +. .+|++ ++||++ +|+++|+++++ +++.+.+.
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~ 257 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKIN 257 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHH
Confidence 444 899999999999999999997 666 44432211 11 14665 678999 45689999888 56766665
Q ss_pred CCCCccccCCCCCcHHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-eeeceeEEEEEecCC
Q 011856 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGP 412 (476)
Q Consensus 337 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~ 412 (476)
.. .....+.+.++..++++.+++.... + +++.++++++.+++++.|.+. ++.... .+.+.++++.+....
T Consensus 258 ~~--~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~ 331 (425)
T 3ecd_A 258 SA--VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GVDLVTGGTDNHLLLVDLRPKG 331 (425)
T ss_dssp HH--HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGGT
T ss_pred hh--hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CCeeccCCCCceEEEEEeCCCC
Confidence 21 1111122334444444444444332 2 467788888888888888774 221111 135667777764211
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEec----cCC------CcceEEe------CCCcHHHHHHHHHHHHHHHHHh
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ------FEAGFTS------LAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~------~~~~~~~------~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
.....+.+.|.++||++. |+. ...+|++ ..++++++++++++|++++++.
T Consensus 332 ------------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 332 ------------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp ------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 012466778889999998 331 1235664 2345999999999999988764
No 163
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=4.7e-24 Score=209.89 Aligned_cols=327 Identities=13% Similarity=0.065 Sum_probs=197.5
Q ss_pred CEEEe-cccChhhccCCC-CcHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011856 99 NEYID-YVGSWGPAIIGH-ADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (476)
Q Consensus 99 ~~~iD-~~~~~~~~~lG~-~~p~v~~a~~~~l~~~-----~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~a 171 (476)
|+|+| |.++ ++||+ .||.+.+++.++++.. ...+.+.+...+|.+++++++ +.+..++++||++|++.+
T Consensus 3 ~~~~~~~~~~---~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQT---TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL-GMDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHTC---SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH-TCSEEEEESCHHHHHHHH
T ss_pred chhhhHHHhh---cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHh-CCCcEEEecCcHHHHHHH
Confidence 34566 3344 78888 5888888888877751 111223455678888888887 456677789999999999
Q ss_pred HHHHHhccCCceEEEEeCCCCCCchh---HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeE
Q 011856 172 LRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (476)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (476)
++..... +++++|+.++.+|..... .....|..+... +...+ .-|+++|++.. +++
T Consensus 79 l~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v--~~~~~-------------~~d~~~l~~~~-----~~~ 137 (357)
T 3lws_A 79 LRIWSDE-TDNRTVAYHPLCHLEIHEQDGLKELHPIETILV--GAADR-------------LMTLDEIKALP-----DIA 137 (357)
T ss_dssp HHHHHHH-HTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC--SCTTS-------------CCCHHHHHTCC-----SCS
T ss_pred HHHHhhc-CCCcEEEecccceeeeeccchhhhccCcEEEEe--cCCCC-------------CcCHHHHhcCc-----Ccc
Confidence 9854322 222266666666653322 122223322221 11111 11788887761 367
Q ss_pred EEEEcccCCCC-CcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--cccccchhhccCCCCchh--hhhhhcCCCCcE
Q 011856 249 AIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPV 322 (476)
Q Consensus 249 ~vi~ep~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~i 322 (476)
+|++++++|++ |.+. +.+++++|.++|++||++||+||+|. +. ..+.... . +....|++ ++||++++. ..
T Consensus 138 ~v~~~~p~np~~G~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~sK~~~~~-~g 213 (357)
T 3lws_A 138 CLLLELPQREIGGVAP-AFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-E-IAGLFDSIYISFYKGLGGI-AG 213 (357)
T ss_dssp EEEEESSBGGGTSBCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-H-HHTTSSEEEEESSSTTCCS-SC
T ss_pred eEEEEcccccCCceeC-CHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-H-HHhcCCEEEEeccccCCCC-ce
Confidence 77777776664 6655 46669999999999999999999985 11 1121111 1 11123444 899999532 23
Q ss_pred EEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-Eeeeec
Q 011856 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYIS 401 (476)
Q Consensus 323 G~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g 401 (476)
|++++++++++.+.........+.+..++ .++++.++|+.. .+..++..++.+++.+.|+++ .++.. ..+..+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~ 287 (357)
T 3lws_A 214 AILAGPAAFCQTARIWKRRYGGDLISLYP-YIVSADYYYELR--KDRMGQYYEQAKQLAEQFNAL---PGVHTTPEVPVS 287 (357)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCCCSCCHH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTS---TTEEEESSSCSS
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCcccchH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC---CCCeeccCCCcc
Confidence 88899999988775211111122323333 445555667653 233445677777787777653 12221 123567
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC---c--ceEEe-----CCCcHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---E--AGFTS-----LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~--~~~~~-----~~~t~e~i~~~~~~l~~~~ 471 (476)
.++++.+... ......++.+.|.++||++.++.. + .++++ +..+++++++++++|.+++
T Consensus 288 ~~~~~~~~~~-----------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 288 NMFHLHFDGQ-----------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SEEEEEEESC-----------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecCC-----------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 7778877431 112235778889999999998732 1 34553 3468999999999998765
No 164
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.90 E-value=5.6e-24 Score=212.59 Aligned_cols=331 Identities=15% Similarity=0.061 Sum_probs=189.0
Q ss_pred EEEcCCCEEEecccChhhccCCCCcHHHHHHHHHHHHhc--CCCC------CCCHHHHHHHHHHHhhCC-CCCeEEEeCC
Q 011856 93 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG------APCLLENVLAEMVISAVP-SIEMVRFVNS 163 (476)
Q Consensus 93 ~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~--~~~~------~~~~~~~~la~~l~~~~~-~~e~v~~~~s 163 (476)
.++.++..|+|+.++ +..+|.+.+++.+++.+. .... ...+...++.++++++++ .++++++++|
T Consensus 15 ~~~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 455677788887765 246899999999998752 1111 123456789999999986 4579999999
Q ss_pred HHHHHHHHHHHHHhc--cCCc-eEEEEeCCCCCCchhHHhh--cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH
Q 011856 164 GTEACMGVLRLARAF--TGRE-RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (476)
Q Consensus 164 GseA~~~al~~ar~~--~~~~-~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 238 (476)
|++|++.+++.+..+ .+++ .|++.+..|++........ .|..+...+... .+ .-|+++|++
T Consensus 89 ~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~ 154 (400)
T 3vax_A 89 ATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SG-------------RISVEGVME 154 (400)
T ss_dssp HHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TC-------------CCCHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CC-------------CcCHHHHHH
Confidence 999999999954211 2455 7777766666544333332 233222211110 00 017999998
Q ss_pred HHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhc
Q 011856 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKII 316 (476)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~l 316 (476)
.+++ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.... .....+. +|++ +++|.+
T Consensus 155 ~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~----~~~~~~~-~d~~~~s~~K~~ 222 (400)
T 3vax_A 155 RLRP---DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQGYGKV----PGDLTTP-IDMISISGHKIG 222 (400)
T ss_dssp TCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTTTTTS----GGGGGSC-CSEEEEETGGGT
T ss_pred hcCC---CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhhcCCC----CcChhhc-CcEEEEeHHHhC
Confidence 8863 6889999999999999988 99999999999999999999962111 1112233 7776 466954
Q ss_pred CCCCcEEEEE-ecHH-HH---HhhcCC----CCccccCCCCCcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Q 011856 317 GGGLPVGAYG-GRRD-IM---EMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGII 385 (476)
Q Consensus 317 g~G~~iG~~~-~~~~-i~---~~l~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 385 (476)
| +.++|+++ ++++ +. ..+.+. .........+.++.++++..++++.+.+ ++..++++++.+++.+.|+
T Consensus 223 g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (400)
T 3vax_A 223 A-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA 301 (400)
T ss_dssp S-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC
Confidence 4 33578888 7762 21 112210 0001122345577888888888886654 5666777777777777776
Q ss_pred HHhhhcCCceEe-eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-------------------
Q 011856 386 DAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------------- 445 (476)
Q Consensus 386 ~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------- 445 (476)
. ....+.... ...+.++.+.+... ...++.+.|. +||.+.++.
T Consensus 302 -~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~ 364 (400)
T 3vax_A 302 -S-TSFQVNGDQDHVVPHILNLSFEDV--------------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLP 364 (400)
T ss_dssp -T-TTCEECSCTTSBCTTEEEEECTTC--------------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCC
T ss_pred -C-CCEEEeCCcccCCCCEEEEEeCCC--------------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCC
Confidence 2 111111000 11234556654321 1256778888 899887642
Q ss_pred ----CcceEEeC---CCcHHHHHHHHHHHHHHHHH
Q 011856 446 ----FEAGFTSL---AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 446 ----~~~~~~~~---~~t~e~i~~~~~~l~~~~~~ 473 (476)
...+|+++ .++++++++++++|++++++
T Consensus 365 ~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 365 EEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHTSEEEEEEEEC--------------------
T ss_pred ccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 24567765 57899999999999988764
No 165
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.90 E-value=1.5e-22 Score=201.85 Aligned_cols=257 Identities=14% Similarity=0.106 Sum_probs=181.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+|++++++++ +.+++++++||++|++.+++.+ ...+++|++.++.|++....+.....
T Consensus 63 ~~~~~~~~l~~~la~~~-g~~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~~------------ 127 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVE-DAAFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVFT------------ 127 (392)
T ss_dssp TCCHHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTGG------------
T ss_pred CCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHHH------------
Confidence 45677788899999888 5568999999999999999953 45677899999999874433211100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
....++..++.+|+++|++.+++ ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.+
T Consensus 128 ----~~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 128 ----GWNVEYTPVALADLDAVRAAIRP---TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp ----GGTCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred ----hcCcEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01124566777799999999973 7899999999999999988 999999999999999999999632
Q ss_pred ccchhhccCCCCchhh--hhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHH
Q 011856 296 YGGAQEYFGVTPDLTT--LGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t--~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (476)
+.....+..+|+++ ++|.+++ | +++|+++++ +++++.+.. ..+..++..+++.+++++..++.+ +...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF---LQNGAGAVPGPFDAYLTMRGLKTL--VLRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 11122344568775 9999995 5 789999887 578777652 223345677888888887776543 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceEe------------------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 371 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
++..++.+++.+.|++. +.+..+ ++.|.++++++..+ ......+..
T Consensus 267 ~~~~~~~~~l~~~L~~~----~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~------------~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEH----PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG------------RTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc------------HHHHHHHHH
Confidence 56666666666666543 222222 55688999998531 233456666
Q ss_pred HHHHCCeEeccC
Q 011856 433 GMLEEGVYFAPS 444 (476)
Q Consensus 433 ~l~~~Gv~~~~~ 444 (476)
.|...|+.+..+
T Consensus 331 ~l~~~~~~~s~G 342 (392)
T 3qhx_A 331 KTNIFILAESLG 342 (392)
T ss_dssp HCSSSEECSCCC
T ss_pred hCCCceECCCCC
Confidence 666666655544
No 166
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.90 E-value=2.1e-22 Score=200.41 Aligned_cols=256 Identities=15% Similarity=0.118 Sum_probs=173.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...++++.++++++.. +.++++||++|++.+++.+ ..++++|++.++.||+........... .
T Consensus 49 ~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~----------~ 115 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR----------G 115 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTT----------T
T ss_pred CCCccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHh----------c
Confidence 45666778888888887533 5556677899999999954 445678899888888744322111110 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (476)
..++..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+++ ..
T Consensus 116 ------g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 116 ------CYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp ------SCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred ------CCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 113566677799999999974 6788999999999999988 999999999999999999999876 32
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
. .. .++ +|++ +++|.+++ |.++ |++++++ ++++.+.+ .....+.+.++++++++.++++.+ +..
T Consensus 183 ~-~~---~~~--~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 251 (386)
T 1cs1_A 183 N-PL---ALG--ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPR 251 (386)
T ss_dssp C-GG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHH
T ss_pred C-cc---ccC--ceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHH
Confidence 1 11 233 4554 79999984 5676 9998886 78887762 223334567888888877776533 234
Q ss_pred HHHHHHHHHHHHHHHHHHhh--h--cCCce----------EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIIDAGK--K--AGHAI----------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~--~--~~~~~----------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 435 (476)
.++..++.+.+.+.|+++.. + ++... ..++.|.++.+.+.+. ...+.+.|.
T Consensus 252 ~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~ 316 (386)
T 1cs1_A 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------------EQTLRRFLG 316 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---------------HHHHHHHHH
Confidence 45566666666666654310 0 01000 1234588888887421 135667778
Q ss_pred HCCeEecc
Q 011856 436 EEGVYFAP 443 (476)
Q Consensus 436 ~~Gv~~~~ 443 (476)
++||++..
T Consensus 317 ~~gi~~~~ 324 (386)
T 1cs1_A 317 GLSLFTLA 324 (386)
T ss_dssp TCSSSEEB
T ss_pred hCCcceEc
Confidence 88998864
No 167
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.90 E-value=1.1e-22 Score=201.55 Aligned_cols=320 Identities=11% Similarity=0.053 Sum_probs=200.7
Q ss_pred EEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHHHh
Q 011856 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARA 177 (476)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~--~e~v~~~~sGseA~~~al~~ar~ 177 (476)
.++|+..+- +-...++++.+++. .++.+...+.++++.+++.++. .+++++++||++|++.+++.
T Consensus 29 ~v~~~~~~~---~~~~~~~~v~~a~~-------~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~--- 95 (374)
T 2aeu_A 29 ALYDLSGLS---GGFLIDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA--- 95 (374)
T ss_dssp GCEECSSCC---CCCCCCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH---
T ss_pred ceeeecccC---CCCCCCHHHHHHHH-------HhcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHh---
Confidence 345666542 11124788888775 1333455567788877777742 28899999999999999994
Q ss_pred ccCCceEEEEeCCCCCCchh--HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE-EEEcc
Q 011856 178 FTGRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEP 254 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~-vi~ep 254 (476)
+ ++++|++.+++||++... .+...|. +++.+ .|+++|++. + +++++ |++++
T Consensus 96 ~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v~~~~ 149 (374)
T 2aeu_A 96 L-KPKKVIHYLPELPGHPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVIITGS 149 (374)
T ss_dssp H-CCSEEEEECSSSSCCTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEEEECB
T ss_pred C-CCCEEEEecCCCCccHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEEEEcc
Confidence 3 678899999999986542 2222222 12233 488998877 3 36788 88888
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~ 332 (476)
++|++|. ....+++|.++|++||++||+||+|..+..+...........+|++ ++||.++ |+++|+++++++++
T Consensus 150 p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~~~~~ 225 (374)
T 2aeu_A 150 TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGKKELV 225 (374)
T ss_dssp CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEEHHHH
T ss_pred CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEECHHHH
Confidence 8888884 3344999999999999999999998543211110000111235766 6999987 57999999999999
Q ss_pred HhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHHHhhhc----CCceEeeeeceeE
Q 011856 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYISGMF 404 (476)
Q Consensus 333 ~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~----~~~~~v~~~g~~~ 404 (476)
+.+... ......+.+++.++++.++|+.+. .+..++..++.+.+ ++.|.+..... ++.....+.|.++
T Consensus 226 ~~l~~~---~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 301 (374)
T 2aeu_A 226 DKIYIE---GTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI 301 (374)
T ss_dssp HHHHHH---HHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE
T ss_pred HHHHHh---hccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE
Confidence 887631 111123568899999999998653 22344555555555 56666543332 2222334556655
Q ss_pred EEEEecCCCcCchhhcccchHHHHHHHHH-HHHCCeEeccCC-----CcceEEeCCC---cHHHHHHHHHHHHHHHHHhh
Q 011856 405 GFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ-----FEAGFTSLAH---SSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~~-----~~~~~~~~~~---t~e~i~~~~~~l~~~~~~~~ 475 (476)
++.-. . .. .+.....++... +.++||++.|+. ...+|+++.. ++++++++++.|+++++++.
T Consensus 302 ~~~~~-~---~~-----~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 302 KRVYK-D---DT-----INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp EEEES-S---HH-----HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred Eeecc-c---cc-----ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44310 0 00 000111235544 456899998863 2357887543 23348999999999888764
No 168
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.90 E-value=2.4e-22 Score=200.25 Aligned_cols=310 Identities=14% Similarity=0.058 Sum_probs=204.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
++++.+++.++++++. + .+.+...++.+.+++++ +.+++++++||++|++.+++..+ ..+++.|++.+++|++..
T Consensus 19 ~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~~~- 93 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVSTL- 93 (393)
T ss_dssp CHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHH-
T ss_pred CHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHh-CCCcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHhHH-
Confidence 5888999999988753 2 35677788888888888 55799999999999999999531 345678888888888754
Q ss_pred hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
..+...|..+...+... .+. ..|+++|++.+++ ++++|++++ ++|.+.+ +++|.++|
T Consensus 94 ~~~~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~~~v~~~~---~~G~~~~----~~~i~~l~ 150 (393)
T 1mdo_A 94 NMIVLLGANPVMVDVDR-DTL------------MVTPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAIYALG 150 (393)
T ss_dssp HHHHHTTCEEEEECBCT-TTC------------CBCHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHHHHHH
T ss_pred HHHHHCCCEEEEEeccC-CcC------------CCCHHHHHHhcCC---CceEEEEeC---CCCCcCC----HHHHHHHH
Confidence 34444454333222110 000 1289999999864 578888765 3566666 99999999
Q ss_pred HHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhcCCCC---------
Q 011856 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAPAGP--------- 340 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~~~~~--------- 340 (476)
++||++||+||+|+ |+ ..+. .++. +|++++| |.+++| ++|+++++ +++++.+.....
T Consensus 151 ~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 151 ERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 99999999999997 44 3332 1232 7877554 888765 79999886 788776642111
Q ss_pred --------ccccCC----CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce--EeeeeceeEEE
Q 011856 341 --------MYQAGT----LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGF 406 (476)
Q Consensus 341 --------~~~~~t----~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i 406 (476)
.+...+ +..+++.++++.+.++.+ ++..++.+++.+++++.|.++..+..... ..++.+.++++
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v 301 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFII 301 (393)
T ss_dssp --------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEE
T ss_pred hhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEE
Confidence 000001 345778777777766543 34666667777777777765421111000 12234556777
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc-------------------------ceEEeCC--CcHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSLA--HSSDD 459 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------~~~~~~~--~t~e~ 459 (476)
.+.... ......++.+.|.++||.+.++..+ .+|+++. +|++|
T Consensus 302 ~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~ 371 (393)
T 1mdo_A 302 RVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESD 371 (393)
T ss_dssp ECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHH
T ss_pred Eecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHH
Confidence 764200 0001357888999999998875422 3677654 69999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
+++++++|+++++.
T Consensus 372 i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 372 FDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 169
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=4.1e-23 Score=203.24 Aligned_cols=315 Identities=16% Similarity=0.109 Sum_probs=193.6
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (476)
+++| .+|++.+|+.+.+.. ...++.+...+|.+++++++ +.+..++++||++|++.+++.+.. .+++.+|+.++.
T Consensus 23 ~~~g-~~p~v~~ai~~~~~~--~~~~~~~~~~~l~~~la~~~-~~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 23 RNVG-VLTEALQNIDDNLES--DIYGNGAVIEDFETKIAKIL-GKQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp CBHH-HHHHHTTTSCTTCBC--CBTTBSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred cccC-CCHHHHHHHHhhccc--CcccCCHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 4444 467888887774322 22346777889999999888 455667789999999999986533 233336666666
Q ss_pred CCCCch--hHH-hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC-CcccCCH
Q 011856 191 YHGHAD--PFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS-GFIAPKP 266 (476)
Q Consensus 191 yhg~~~--~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~-G~i~~~~ 266 (476)
+|.... ... ...|..+...+. ..+ .-|+++|++. . +++++|+++++++++ |.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~--~~~-------------~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~-~~ 157 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGT--ANQ-------------LLTIDDIKSL-R---EPVSSVLIELPQREIGGQLP-AF 157 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSC--TTS-------------CCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCC-CH
T ss_pred ceeeehhcchHHHhcCceEEecCC--cCC-------------CcCHHHHHhc-c---CCceEEEEEecccCCCcccC-CH
Confidence 654322 112 233443322211 111 0178888877 2 367888888776654 5554 55
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCcc---ccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCCc
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFR---LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 341 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r---~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~~ 341 (476)
+++++|.++|++||++||+||+|..+. .+.. ...+....|++ ++||+++++.. |++++++++++.+......
T Consensus 158 ~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~ 234 (359)
T 3pj0_A 158 EELEKISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRR 234 (359)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHH
Confidence 669999999999999999999985321 1111 11111234555 79999986433 7778999998887521111
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE-eeeeceeEEEEEecCCCcCchhhc
Q 011856 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAK 420 (476)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~ 420 (476)
...+++..++. ++++.++++.. .+..++..++.+++.+.|+++ .++... .+..+.++++.+...
T Consensus 235 ~~~~~~~~~~~-~~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~--------- 299 (359)
T 3pj0_A 235 YGGDLISLYPY-ILSADYYFEKR--IGKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSNMFHVYFENS--------- 299 (359)
T ss_dssp TTCCCSCCHHH-HHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEEESSC---------
T ss_pred hCCCcchhHHH-HHHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC---CCceeeccCCcceEEEEEecCc---------
Confidence 12233333444 44455666543 245556777788888877754 122211 234566677766321
Q ss_pred ccchHHHHHHHHHHHHCCeEeccCCC------cceEEeC-----CCcHHHHHHHHHHHHHH
Q 011856 421 KSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSL-----AHSSDDIQHTITAAEKV 470 (476)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~~~~~~~------~~~~~~~-----~~t~e~i~~~~~~l~~~ 470 (476)
.......+.+.|.++||++.++.. ..++++. ..+.+++++++++|.++
T Consensus 300 --~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 300 --ADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp --HHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred --cchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 122346788899999999998742 1245533 36899999999998875
No 170
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.89 E-value=7.4e-22 Score=198.29 Aligned_cols=314 Identities=12% Similarity=0.065 Sum_probs=186.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-----------~~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.+|+|.+++.+++.+....+++ .+.+..+.+++++.++ ..+++ +++||++|++.+++.+ ...++.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHHHHHHHHh--cCCCCE
Confidence 3899999999888542211111 2344455567777775 23334 5567899999999964 456678
Q ss_pred EEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCc
Q 011856 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (476)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (476)
|++.+++|++..... +...+.......++.... -..|+++|++.+++. ++++|++.+.+ .|.
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~ 177 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELD------------GRIDYEKVREIAKKE--KPKLIVCGASA--YAR 177 (417)
T ss_dssp EEEECC----------------CCSEEEEECCCTT------------SSCCHHHHHHHHHHH--CCSEEEECCSS--CCS
T ss_pred EEecccccccccchhhhhhhhcceeeeEeccCCCC------------CCcCHHHHHHHHHhc--CCeEEEECCcc--cCc
Confidence 999888887743311 111122111100000000 013899999999742 46677765543 377
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEec-HHHHHhhc
Q 011856 262 IAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR-RDIMEMVA 336 (476)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~-~~i~~~l~ 336 (476)
+.+ +++|+++|++||++||+||+| .|+ ..+.... .+. ..|+++ +||++ +|+++|+++++ +++++.+.
T Consensus 178 ~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 178 VID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKIN 249 (417)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHh
Confidence 777 999999999999999999997 454 3322110 011 247765 56999 56789999998 78888775
Q ss_pred CCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC
Q 011856 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 337 ~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
.. ..+..+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+.. ..+.. ....+.++++.+.....
T Consensus 250 ~~--~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~-~~~~~~~~~~~~~~~~~ 324 (417)
T 3n0l_A 250 SA--IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK--FKLVS-DGTDNHLVLMSFLDREF 324 (417)
T ss_dssp HH--HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT--CEEGG-GSCSSSEEEEECTTSSS
T ss_pred hh--hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC--ceecc-CCCCceEEEEEcccCCC
Confidence 31 11222334456666666666665332 4566777777788888887631 11111 01234466666532110
Q ss_pred cCchhhcccchHHHHHHHHHHHHCCeEeccCCC----------cceEEeC------CCcHHHHHHHHHHHHHHHHH
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTSL------AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----------~~~~~~~------~~t~e~i~~~~~~l~~~~~~ 473 (476)
....+.+.|.++||++.+... ..+++.. .++++++++++++|++++++
T Consensus 325 ------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 325 ------------SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ------------CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 124667788899999875431 2356532 36789999999999998864
No 171
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.89 E-value=3e-22 Score=200.37 Aligned_cols=281 Identities=13% Similarity=0.015 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh---HHhhcCCCCccCCCCCC
Q 011856 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 214 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~ 214 (476)
.+...+|.+.+++++ +.+++++++||++|+..+++.. ...++.|++.++.|++.... .+...|.
T Consensus 61 ~~~~~~l~~~ia~~~-g~~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---------- 127 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI---------- 127 (404)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC----------
Confidence 466668888888887 4568999999999999999842 34567788888888774332 2222222
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCc-
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF- 292 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~- 292 (476)
++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|.++
T Consensus 128 ---------~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 128 ---------QVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp ---------EEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred ---------EEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 3556666789999998863 6889999998899999987 9999999999 99999999999866
Q ss_pred cccccchhhccCCCCchh--hhhhhcC-CCCcE-EEEEecHHHHH-hhcCCCCccccC-CCCCcHHHHHHHHHHHHHhcC
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKE 366 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~i-G~~~~~~~i~~-~l~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~ 366 (476)
.. ... .++ .|++ ++||.++ +|+|+ |++++++++++ .+.+. .... +.+.+++.+.++.++++.+
T Consensus 192 ~~-~~~---~~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~l~~~-- 260 (404)
T 1e5e_A 192 IT-NPV---DFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG---IKDITGSVISPHDAWLITRGLSTL-- 260 (404)
T ss_dssp TC-CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC---CCCCCCCCCCHHHHHHHHHHHTTH--
T ss_pred hC-Ccc---ccC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHhHhHH--
Confidence 32 111 133 4554 7999999 58998 99999999888 77642 1221 3457888888888887532
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh----hhcCCc----------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHH
Q 011856 367 PGTYEYLNKITGELTQGIIDAG----KKAGHA----------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~----~~~~~~----------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (476)
+...++..++.+.+.+.|++.. ..++.. .+.++.|.|+.|++.+ . .....+
T Consensus 261 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------------~--~~~~~~ 325 (404)
T 1e5e_A 261 NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-------------G--FEGAKK 325 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-------------H--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-------------C--HHHHHH
Confidence 2334455556666666555431 001100 0123458888887732 0 123444
Q ss_pred HHHHCCeEeccC----------------------------C--CcceEEeCCCcHHHHHHHHHHHHHHHHHhh
Q 011856 433 GMLEEGVYFAPS----------------------------Q--FEAGFTSLAHSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 433 ~l~~~Gv~~~~~----------------------------~--~~~~~~~~~~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.+.+.||++... + ...+|+++.. |+++++++.|+++++.++
T Consensus 326 ~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 326 LLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDALL 396 (404)
T ss_dssp HHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHHHH
Confidence 555678744321 1 2457888777 899999999999988764
No 172
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.89 E-value=1.5e-22 Score=200.99 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=201.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHhhCCC-----CCeEEEeCCHHHHHHHHHHHHH-hccCCceEEEE
Q 011856 116 ADDQVLAALGETMKKGTSFGAPC--LLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLAR-AFTGRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~--~~~~~la~~l~~~~~~-----~e~v~~~~sGseA~~~al~~ar-~~~~~~~ii~~ 187 (476)
.+|++.+++.+.+.. ++.+. ....++.+++++.+.. .++++|++||++|++.+++.+. ...++++|++.
T Consensus 16 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG---HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC---TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 357777776554322 22221 2345566777776642 4799999999999999999542 11456678787
Q ss_pred eC-CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~-~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+. .||......+...|..+...+.....+ ..|+++|++.+++. ++++|+++++++++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-- 155 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYGAQVDVVRPLKIGE-------------SVPLELITEKLSQN--SYGAVTVTHVDTSTAVLSD-- 155 (385)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC--
T ss_pred cCCcchHHHHHHHHHcCCceEEEecCCCCC-------------CCCHHHHHHHHhcC--CCCEEEEEccCCCcCeEcC--
Confidence 54 555543233444454333222200011 02899999999752 5678888988889999998
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHH-hhcC----
Q 011856 267 DFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME-MVAP---- 337 (476)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~-~l~~---- 337 (476)
+++|.++|++| |++||+||+|+.... ......+ .+|++ +++|.++++..+|++++++++++ .+.+
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~ 229 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG 229 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHC
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCC
Confidence 99999999999 999999999962111 1111222 35666 56898876555799999998877 5420
Q ss_pred -C-C---------C---ccccC----CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH-HHHhhhcCCce
Q 011856 338 -A-G---------P---MYQAG----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI-IDAGKKAGHAI 395 (476)
Q Consensus 338 -~-~---------~---~~~~~----t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~ 395 (476)
. . + .+..+ .++.++.+++++.++++.+.+ ++..++++++.+++.+.| +++ ++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~ 305 (385)
T 2bkw_A 230 HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----QLTS 305 (385)
T ss_dssp CCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----CCEE
T ss_pred CCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----Ccee
Confidence 0 0 0 00001 135677888888888887643 345677777888888777 553 2211
Q ss_pred Eee-----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-----cceEEe-CC-----CcHHH
Q 011856 396 CGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTS-LA-----HSSDD 459 (476)
Q Consensus 396 ~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~~~~-~~-----~t~e~ 459 (476)
... ..+.++++.+. + ..++.+.|.++||.+.++.. ..+|++ +. +|++|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred cccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 111 24667777652 1 25788888999999988642 356877 43 69999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
+++++++|++++++
T Consensus 370 i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 370 MKNCFDLIKLALQR 383 (385)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 173
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.89 E-value=8e-22 Score=201.47 Aligned_cols=316 Identities=16% Similarity=0.130 Sum_probs=203.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhc---c----
Q 011856 113 IGHADDQVLAALGETMKKGTSFGAP------CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---- 179 (476)
Q Consensus 113 lG~~~p~v~~a~~~~l~~~~~~~~~------~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~---~---- 179 (476)
.+|.+|++.+++.++....+.+... .++..+++++++++++-...+++++||++|+..++++++.+ .
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~ 154 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 154 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4467788888887763222211111 15678889999988842234567899999999999887653 1
Q ss_pred CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCC
Q 011856 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (476)
++++||+.+ .+|+.+...+...|..+..++... .+. -|+++|++.+++ ++++|++++.+ ++
T Consensus 155 ~r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~-~~~-------------~d~~~L~~~i~~---~t~~v~~~~pn-~~ 215 (474)
T 1wyu_B 155 TRRVVLVPD-SAHGSNPATASMAGYQVREIPSGP-EGE-------------VDLEALKRELGP---HVAALMLTNPN-TL 215 (474)
T ss_dssp TCCEEEEET-TSCTHHHHHHHHTTCEEEEECBCT-TSS-------------BCHHHHHHHCST---TEEEEEECSSC-TT
T ss_pred CCCEEEEeC-CcChhhHHHHHHCCCEEEEecCCC-CCC-------------cCHHHHHHhhCC---CceEEEEECCC-CC
Confidence 233666655 777877776666665433322111 010 189999999963 68888888754 57
Q ss_pred Ccc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhh--hhhhcCC-----CCcEEEEEecHHH
Q 011856 260 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGG-----GLPVGAYGGRRDI 331 (476)
Q Consensus 260 G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t--~sK~lg~-----G~~iG~~~~~~~i 331 (476)
|.+ .+ +++|.++|++||++||+||+|..+..+.. ....++ +|+++ ++|.+++ |+++|++++++++
T Consensus 216 G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l 288 (474)
T 1wyu_B 216 GLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL 288 (474)
T ss_dssp SCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGG
T ss_pred cccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHH
Confidence 877 34 99999999999999999999954322211 112233 67775 5898862 3699999999998
Q ss_pred HHhhcCC-----CC-c----------cccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 332 MEMVAPA-----GP-M----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 332 ~~~l~~~-----~~-~----------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
++.+... +. . ....++++|+++++++.+.++.+.. ++..+++.++.+++.+.|+++ .+.
T Consensus 289 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~~ 366 (474)
T 1wyu_B 289 APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYR 366 (474)
T ss_dssp GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCB
T ss_pred HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcE
Confidence 8776410 00 0 0112345788888888888875433 334777888888898888875 222
Q ss_pred CceEeeeecee--EEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCC--cHHHHHHH
Q 011856 393 HAICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAH--SSDDIQHT 463 (476)
Q Consensus 393 ~~~~v~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~--t~e~i~~~ 463 (476)
+. .+.+.+ +++.+.. .....++.+.|+++||++.... ...+|+++.. |+++++++
T Consensus 367 ~~---~~~~~~~~~~~~~~~-------------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~ 430 (474)
T 1wyu_B 367 VP---YDGPSMHEFVAQPPE-------------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAF 430 (474)
T ss_dssp CS---SCSSCCSCEEEBCST-------------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHH
T ss_pred ec---CCCCcceEEEEEcCC-------------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHH
Confidence 21 111122 3333310 0113578889999999863221 2457886554 99999999
Q ss_pred HHHHHHHHH
Q 011856 464 ITAAEKVKM 472 (476)
Q Consensus 464 ~~~l~~~~~ 472 (476)
+++|+++++
T Consensus 431 ~~~L~~~~~ 439 (474)
T 1wyu_B 431 AEAMGALLK 439 (474)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998864
No 174
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.89 E-value=8e-22 Score=196.34 Aligned_cols=281 Identities=15% Similarity=0.094 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (476)
++++...+|++++++++ +.+++++++||++|+..+++.+ ..++++|++.++.||+..... +...|.
T Consensus 56 ~~~~~~~~l~~~la~~~-g~~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-------- 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIE-GAAGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFTHWLPRFGI-------- 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHHHHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC--------
Confidence 46788889999999988 4458888999999999999842 345678999999998854433 222222
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
++..++.+|++++++.+++ ++++|++|++++++|.+.+ +++|.++|++||+++|+||+|+++
T Consensus 125 -----------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~ 186 (389)
T 3acz_A 125 -----------EVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP 186 (389)
T ss_dssp -----------EEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT
T ss_pred -----------EEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3555666799999998864 6899999999999999998 999999999999999999999754
Q ss_pred cccccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEecH-HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 293 RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~~-~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
..+. .++..+|++ +++|.+++ |.|+ |++++++ ++++.+.. .......+.++..+.++++.++.+ +
T Consensus 187 ~~~~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~ 256 (389)
T 3acz_A 187 CFLK-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF---YRKDAGSLMAPMDAFLCARGMKTL--P 256 (389)
T ss_dssp TTCC-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccC-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHcCccHH--H
Confidence 2111 123457877 79999995 6887 9999998 88887763 211112345788887777777533 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhh----------hcCCc----eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHH
Q 011856 368 GTYEYLNKITGELTQGIIDAGK----------KAGHA----ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~----------~~~~~----~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (476)
...++..++...+.+.|++... +++.. ...++.|.++.+++.+ ...+.+.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----------------~~~~~~~ 320 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----------------FEAAKKL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC----------------HHHHHHH
Confidence 3345556666667676665310 00000 0113457888888742 1234455
Q ss_pred HHHCCeEeccC--C----------------------------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 434 MLEEGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 434 l~~~Gv~~~~~--~----------------------------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+.+.|+++... + ...+|++.... +++++++.|++++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~~ 388 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALEL 388 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHTC
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 55667766542 1 13456665543 677778888777753
No 175
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=2.7e-21 Score=192.41 Aligned_cols=311 Identities=14% Similarity=0.087 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
+|++.+++.++++++....++.+...++.+.++++++ .+..++++||++|++.+++..+ ..++++|++..++||+...
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~-~~~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~ 93 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG-AAHALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFISSSQ 93 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHHHHH
Confidence 4899999999998753223456677889999999884 4466667778999999999531 3456789998989888654
Q ss_pred hHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
. +...|..+...+.....+ .-|+++|++.++. ++++|+ |+ +++|.+.+ +++|.++|
T Consensus 94 ~-~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~--~~-n~tG~~~~----l~~i~~la 149 (388)
T 1b9h_A 94 A-AQRLGAVTVPVDVDAATY-------------NLDPEAVAAAVTP---RTKVIM--PV-HMAGLMAD----MDALAKIS 149 (388)
T ss_dssp H-HHHTTCEEEEECBCTTTC-------------CBCHHHHHHHCCT---TEEEEC--CB-CGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCCcC-------------CCCHHHHHHhcCc---CceEEE--Ee-CCccCcCC----HHHHHHHH
Confidence 3 344444333222111000 0189999999863 567666 54 44677777 99999999
Q ss_pred HHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh--hhcCCCCcEEEEEecHH-H--HHhhcC---CCC-----c
Q 011856 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRD-I--MEMVAP---AGP-----M 341 (476)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s--K~lg~G~~iG~~~~~~~-i--~~~l~~---~~~-----~ 341 (476)
++||++||+||+|+ |+ ..+.. ...++ ..++.+|| |.+++ .++|+++++++ + ++.+.. .+. .
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 99999999999996 44 33321 12222 23344666 66654 58999998875 6 555421 100 0
Q ss_pred c----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe------eeeceeEEEEEecC
Q 011856 342 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEG 411 (476)
Q Consensus 342 ~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~ 411 (476)
+ .+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+++ . ++.... +..+.++++.+...
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI-D--GVVPQGGDVRADRNSHYMAMFRIPGL 300 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS-T--TCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC-C--CccccCCCcCCCccceEEEEEEeCCc
Confidence 0 0122335677766665555433 346667777777787777653 1 121111 23356777776321
Q ss_pred CCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc---------------------------------ceEEe--CCC-
Q 011856 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTS--LAH- 455 (476)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------------------~~~~~--~~~- 455 (476)
......++.+.|.++||.++++..+ .++++ ..+
T Consensus 301 -----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 369 (388)
T 1b9h_A 301 -----------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 369 (388)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred -----------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCC
Confidence 1123467888999999998765321 14554 356
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~ 473 (476)
|++|++++++.|++++++
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 899999999999998764
No 176
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.89 E-value=2.7e-22 Score=200.97 Aligned_cols=288 Identities=13% Similarity=0.034 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|+++++++. +.+.+++++||++|+..+++.. ...++.||+.++.|++..........
T Consensus 78 ~~~p~~~~l~~~la~~~-g~~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~------------ 142 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIE-GAPAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILP------------ 142 (414)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHH------------
T ss_pred CCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHH------------
Confidence 46788899999999988 5688999999999999999842 34567888889899884432211000
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
..+..+..++.+|+++|++.++. ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+. +
T Consensus 143 ----~~g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~---~ 208 (414)
T 3ndn_A 143 ----RWGVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFAT---P 208 (414)
T ss_dssp ----HTTCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH---H
T ss_pred ----HcCcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCcc---c
Confidence 01124666777899999999974 5789999999999999988 99999999999999999999952 1
Q ss_pred ccchhhccCCCCchhhhhhhcCC-C-CcEEEEEecHHHHH-hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHH
Q 011856 296 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~sK~lg~-G-~~iG~~~~~~~i~~-~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (476)
..+....+|....+.+++|.+++ | +++|+++++++.+. .+... ...++ ...++..+++++..++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~-~~~~g--~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL-MRHTG--PAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHH-HHHHC--CCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHH-HHHcC--CCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111234554445579999996 7 89999999988765 44310 01112 234677666665555433 334556
Q ss_pred HHHHHHHHHHHHHHHhhhcCCce------------------EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHH
Q 011856 373 LNKITGELTQGIIDAGKKAGHAI------------------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (476)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~------------------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (476)
..++.+++.+.|++. +.+. ..++.|.|+++++..... .+.+...+|.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 667777777776643 2221 125678999999953100 0023446677777
Q ss_pred HHCCeEeccCCCc---------------------------ceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 435 LEEGVYFAPSQFE---------------------------AGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 435 ~~~Gv~~~~~~~~---------------------------~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
...++.+..++.. .+|++.. .|+.+.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG--~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG--LEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC--SSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC--cCCHHHHHHHHHHhh
Confidence 6666655544322 2345443 366777788887775
No 177
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.89 E-value=9.9e-23 Score=201.67 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH
Q 011856 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (476)
Q Consensus 120 v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (476)
+.+++.+.+..+. .++.+...++.+.+++++ +.+++++++||++|++.+++.++ ..+++.|++.+++|++.... +
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~~~~~~-~~~gd~v~~~~~~~~~~~~~-~ 95 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEKFEKRFAALH-NAPHAIGVGTGTDALAMSFKMLN-IGAGDEVITCANTFIASVGA-I 95 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHH-H
T ss_pred HHHHHHHHHHcCC--cccChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHHHH-H
Confidence 7788877776642 346788889999999998 55699999999999999999531 45567888888888875433 3
Q ss_pred hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh
Q 011856 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (476)
Q Consensus 200 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (476)
...|..+...+...... -|+++|++.+++ ++++|+ |+ +++|.+.+ +++|.++|++|
T Consensus 96 ~~~g~~~~~~~~~~~~~--------------~d~~~l~~~~~~---~~~~v~--~~-n~~G~~~~----~~~i~~~~~~~ 151 (374)
T 3uwc_A 96 VQAGATPVLVDSENGYV--------------IDPEKIEAAITD---KTKAIM--PV-HYTGNIAD----MPALAKIAKKH 151 (374)
T ss_dssp HHTTCEEEEECBCTTSS--------------BCGGGTGGGCCT---TEEEEC--CB-CGGGCCCC----HHHHHHHHHHT
T ss_pred HHcCCEEEEEecCCCCC--------------cCHHHHHHhCCC---CceEEE--Ee-CCcCCcCC----HHHHHHHHHHc
Confidence 34444322211110000 078888888764 567666 43 45777777 99999999999
Q ss_pred CCEEEEeccccCccccccchhhccCCCCchhhhh----hhcCC-CCcEEEEEec-HHHHHhhcCCCC------cc---cc
Q 011856 280 GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAPAGP------MY---QA 344 (476)
Q Consensus 280 g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~s----K~lg~-G~~iG~~~~~-~~i~~~l~~~~~------~~---~~ 344 (476)
|++||+||+|+.+ ..+.....+..+|++++| |.+++ |. +|+++++ +++++.+..... .. .+
T Consensus 152 ~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
T 3uwc_A 152 NLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYG 227 (374)
T ss_dssp TCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCC
T ss_pred CCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCcccccc
Confidence 9999999999733 112223445456888766 99987 65 8888765 456555432100 00 12
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCCcCchhhcccc
Q 011856 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 345 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
.++..+++.++++...++.+ +++.++.+++.+++++.|.++.....++.... ....++.+.+...
T Consensus 228 ~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 293 (374)
T 3uwc_A 228 INCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK------------ 293 (374)
T ss_dssp CBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET------------
T ss_pred ccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC------------
Confidence 23344666666655544322 44667777777777777765431011111000 1112111222110
Q ss_pred hHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 424 TTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
...++.+.|.++||.+.++.. ..++++ ..+|++||++++++|++++++
T Consensus 294 --~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 294 --YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp --THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 135788899999999887641 234553 557999999999999999875
No 178
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.89 E-value=1.8e-21 Score=196.16 Aligned_cols=311 Identities=13% Similarity=0.044 Sum_probs=197.5
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (476)
..++ .++++.+++.+.++.+. |....+...++.+.+++++ +.+++++++||++|++.+++... .+++|++.+++
T Consensus 26 p~~~-~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~l~~l~---~gd~Vlv~~~~ 99 (424)
T 2po3_A 26 PNRI-DRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLA-GVRHAVATCNATAGLQLLAHAAG---LTGEVIMPSMT 99 (424)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHHT---CCSEEEEESSS
T ss_pred CCCC-ChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHcC---CCCEEEECCCc
Confidence 3444 47899999999887642 3211477788888888888 56799999999999999999642 45889999999
Q ss_pred CCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
|++... .+...|..+...+.... +. .-|+++|++.+++ ++++|++.+ ++|...+ ++
T Consensus 100 ~~~~~~-~~~~~G~~~~~v~~~~~-~~------------~~d~~~l~~~i~~---~~~~v~~~~---~tG~~~~----l~ 155 (424)
T 2po3_A 100 FAATPH-ALRWIGLTPVFADIDPD-TG------------NLDPDQVAAAVTP---RTSAVVGVH---LWGRPCA----AD 155 (424)
T ss_dssp CTHHHH-HHHHTTCEEEEECBCTT-TS------------SBCHHHHGGGCCT---TEEEEEEEC---GGGCCCC----HH
T ss_pred cHHHHH-HHHHcCCEEEEEecCCC-cC------------CcCHHHHHHhhCc---CCcEEEEEC---CCCCcCC----HH
Confidence 888554 34444543332221100 00 0178999888863 577777653 3566655 99
Q ss_pred HHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchh--hhh--hhcCCCCcEEEEEec-HHHHHhhcCC---CC
Q 011856 271 AIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVAPA---GP 340 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~--t~s--K~lg~G~~iG~~~~~-~~i~~~l~~~---~~ 340 (476)
+|.++|++||++||+||+|+ |+ ..+.. ++..+|++ +|| |.+++ +++|+++++ +++++.+... ..
T Consensus 156 ~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~ 229 (424)
T 2po3_A 156 QLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGF 229 (424)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999999997 77 44321 22225766 455 76665 799999998 7887766421 00
Q ss_pred --cc----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eec-----eeEEEEE
Q 011856 341 --MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS-----GMFGFFF 408 (476)
Q Consensus 341 --~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g-----~~~~i~~ 408 (476)
.+ .+.++..+++.+++++..++.+ +++.++.+++.+++.+.|.+ .+...... ..| .++.+.+
T Consensus 230 ~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~~i~~ 303 (424)
T 2po3_A 230 DLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLAD----LPGVLVADHDRHGLNNHQYVIVEI 303 (424)
T ss_dssp TCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCS----CTTEEECCGGGGSCCCCCCEEEEE
T ss_pred cccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCccccCCCCCCccccEEEEEEE
Confidence 00 1112234577777766655543 23555555566666555543 21111111 111 3444554
Q ss_pred ecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-c------------------------ceEEe--CCCcHHHHH
Q 011856 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E------------------------AGFTS--LAHSSDDIQ 461 (476)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~------------------------~~~~~--~~~t~e~i~ 461 (476)
.+.. ......++.+.|.++||.+.+... + .++++ ..++++|++
T Consensus 304 ~~~~----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~ 373 (424)
T 2po3_A 304 DEAT----------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIR 373 (424)
T ss_dssp CHHH----------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHH
T ss_pred CCcc----------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHH
Confidence 3100 000125677888999999986321 1 05665 778999999
Q ss_pred HHHHHHHHHHHH
Q 011856 462 HTITAAEKVKMR 473 (476)
Q Consensus 462 ~~~~~l~~~~~~ 473 (476)
+++++|++++++
T Consensus 374 ~~~~~L~~~~~~ 385 (424)
T 2po3_A 374 RVADLLRLCATR 385 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 179
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.89 E-value=1.4e-22 Score=209.83 Aligned_cols=346 Identities=11% Similarity=0.064 Sum_probs=198.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHH-hhC-----C-CCCeEEEeCCHHHHHHHHHHHH--Hhc
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVI-SAV-----P-SIEMVRFVNSGTEACMGVLRLA--RAF 178 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~---~~~~~~~~la~~l~-~~~-----~-~~e~v~~~~sGseA~~~al~~a--r~~ 178 (476)
+..++.+|.+.+++.+.+.. ..|. +..++.+++++.+. +.. + +.++|++++|+++++..+++.. +.+
T Consensus 112 g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l 190 (546)
T 2zy4_A 112 DQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL 190 (546)
T ss_dssp HTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 34577888888888887753 2332 23467777666553 332 1 3579999999999999999852 224
Q ss_pred c-CCceEEEEeCCCCCCchhHHhh-cCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccC
Q 011856 179 T-GRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (476)
Q Consensus 179 ~-~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (476)
. +++.|++.+++|+++...+... .|..+..++.....++ . -|+++|++.+. .++++|+++..+
T Consensus 191 ~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~~~---~~~k~v~l~~p~ 255 (546)
T 2zy4_A 191 LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNW---------Q---YPDSELDKLKD---PAIKIFFCVNPS 255 (546)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTT---------B---CCHHHHGGGGS---TTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCC---------C---CCHHHHHHhhC---CCCeEEEEECCC
Confidence 3 4678999999998865443221 1221111111000000 0 17888887764 257777766667
Q ss_pred CCCCcccCCHHHHHHHHHHH--HHhCCEEEEeccccCccccccchhhcc-CCCCchhhhhhhcC-CCCcEEEEEecHH-H
Q 011856 257 GNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRD-I 331 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~--~~~g~llI~DEv~~g~r~g~~~~~~~~-g~~pDi~t~sK~lg-~G~~iG~~~~~~~-i 331 (476)
|++|.+.+.++ +++|.++| ++||++||+||+|.+|..+.....+.. +....+.+|||.+| +|+|+||++++++ +
T Consensus 256 NPtG~~~~~~~-l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l 334 (546)
T 2zy4_A 256 NPPSVKMDQRS-LERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNV 334 (546)
T ss_dssp SSSCBCCCHHH-HHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCH
T ss_pred CCCCccCCHHH-HHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHH
Confidence 77888776555 99999999 789999999999988822211111111 11122348999998 7999999998875 7
Q ss_pred HHhhcCCC---------------------------------CccccCCCCCcHHHHHHH-HH-HHHHhcC-CCHHHHHHH
Q 011856 332 MEMVAPAG---------------------------------PMYQAGTLSGNPLAMTAG-IH-TLKRLKE-PGTYEYLNK 375 (476)
Q Consensus 332 ~~~l~~~~---------------------------------~~~~~~t~~~~~~~~aaa-~a-al~~~~~-~~~~~~~~~ 375 (476)
++.+.... ......+.+.+.+.+.+. +. ....+++ +.+.+++++
T Consensus 335 ~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~ 414 (546)
T 2zy4_A 335 FDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQ 414 (546)
T ss_dssp HHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66652100 000122334566666542 21 1233333 333333333
Q ss_pred HHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecC----CCcCchhhcccchHHHHHHHHHHHHCCeEeccCC-----C
Q 011856 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG----PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----F 446 (476)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~ 446 (476)
..+.-++.+.+... .++....+..|.++++.+... +...+.............+.+.+.++||.+.|+. .
T Consensus 415 ~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~ 493 (546)
T 2zy4_A 415 LIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNR 493 (546)
T ss_dssp HHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSS
T ss_pred HHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCC
Confidence 32222222222221 222212234455667776310 0000000000000012345677788999999874 2
Q ss_pred cceEEeCCC-cHHHHHHHHHHHHHHHHHh
Q 011856 447 EAGFTSLAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 ~~~~~~~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
+.+|+++.. +++++++++++|++++++.
T Consensus 494 ~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 494 PSGRASLANLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 357888776 8999999999999988754
No 180
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2.4e-21 Score=196.52 Aligned_cols=315 Identities=17% Similarity=0.145 Sum_probs=189.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-------CH---HHHHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCce
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-------CL---LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-------~~---~~~~la-~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (476)
.+|+|++|+.+++.+....+++ .. ..++++ +++++.+ +.+.+.+ ++||++|++.+++.+ ...++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~-g~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~ 133 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF-GAEFANVQPHSGAQANAAVLHAL--MSPGER 133 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc-CCCceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 3899999999888642211111 11 224566 8888877 5566666 999999999999853 345678
Q ss_pred EEEEeCCCCCCchhH--HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE-cccCCCCC
Q 011856 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSG 260 (476)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~G 260 (476)
|++.+++|+++.... +...|.......++.... . -..|+++|++.+++. ++++|++ .|++++++
T Consensus 134 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~ 200 (447)
T 3h7f_A 134 LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA--------T---HLIDMDAVRATALEF--RPKVIIAGWSAYPRVL 200 (447)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT--------T---CSCCHHHHHHHHHHH--CCSEEEEECSSCCSCC
T ss_pred EEecCcccccccchhhhhhhcCCeeEEEEcCcCcc--------c---CCcCHHHHHHHHHhc--CCeEEEEcCCCCCCcc
Confidence 888888877632211 111111111100110000 0 013899999999643 3456666 56655433
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhc
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
+ +++|+++|++||++||+||+| .|+ +.|..... +. ..|++ ++||+++ |+++|++++++++++.+.
T Consensus 201 ---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 ---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp ---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHH
T ss_pred ---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHh
Confidence 3 999999999999999999997 666 44432111 11 23555 6899996 789999999999888775
Q ss_pred CCCCccccCCCCC-cHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh-cCCceEee--eeceeEEEEEe
Q 011856 337 PAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK-AGHAICGG--YISGMFGFFFT 409 (476)
Q Consensus 337 ~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v~--~~g~~~~i~~~ 409 (476)
.. ...++++. +...++++.+++..+.+ +++.+++.++.+++.+.|++.... .++. .+. ..+.++++.+.
T Consensus 270 ~~---~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 345 (447)
T 3h7f_A 270 SA---VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVS-VVSGGTDVHLVLVDLR 345 (447)
T ss_dssp HH---HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCE-EGGGSCSSSEEEEECT
T ss_pred hh---cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeE-EecCCCCCCEEEEEcC
Confidence 31 11122222 33335555556655433 346777888888888888765111 1221 111 23456666653
Q ss_pred cCCCcCchhhcccchHHHHHHHHHHHHCCeEec----cC------CCcceEEeC------CCcHHHHHHHHHHHHHHHHH
Q 011856 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS------QFEAGFTSL------AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~------~~~~~~~~~------~~t~e~i~~~~~~l~~~~~~ 473 (476)
.... ....+.+.|.++||++. +. ....+|+.. .++++|+++++++|++++.+
T Consensus 346 ~~~~------------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 346 DSPL------------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp TSSC------------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCC------------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 2110 11345566667799988 33 122356632 26899999999999998864
No 181
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-21 Score=201.84 Aligned_cols=320 Identities=13% Similarity=0.072 Sum_probs=205.3
Q ss_pred CcHHHHHHHHHHHHhcCC---CCC-----CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHHHhcc----C
Q 011856 116 ADDQVLAALGETMKKGTS---FGA-----PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT----G 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~---~~~-----~~~~~~~la~~l~~~~~-~--~e~v~~~~sGseA~~~al~~ar~~~----~ 180 (476)
+++.+.+++.+++..... +.+ ..+++.+++++++++++ . .+++++++||++|+..+++.++... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999998877321 111 13566788889999886 2 4689999999999999999876531 1
Q ss_pred --CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 181 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 181 --~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
++.|++.. ..|..+...+...|..+..++.....+. -|+++|++.+++ ++++|+++.++++
T Consensus 156 ~~~~~Vi~~~-~~h~~~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~p~np 218 (497)
T 3mc6_A 156 ITEPEIIAPV-TAHAGFDKAAYYFGMKLRHVELDPTTYQ-------------VDLGKVKKFINK---NTVLLVGSAPNFP 218 (497)
T ss_dssp CSSCEEEEET-TSCHHHHHHHHHSCCEEEEECBCTTTCS-------------BCTTTTGGGCCS---SEEEEEEETTCTT
T ss_pred CCCceEEEeC-CccHHHHHHHHHcCCeEEEEecCcccCc-------------CCHHHHHHHHhh---CCEEEEEECCCCC
Confidence 24555554 4555566666666654433222110010 167888888864 5888999888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-----cc----cchhhccCCCCchh--hhhhhcCCCCcEEEEE
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----AY----GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYG 326 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-----g~----~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~ 326 (476)
+|.+.+ +++|+++|++||++||+||+|+++ +. +. .+.....|+ |++ +++|.+.+|.++|+++
T Consensus 219 tG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~~~g~~~ 292 (497)
T 3mc6_A 219 HGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPKGSSVIM 292 (497)
T ss_dssp TCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCSSCEEEE
T ss_pred CCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCCCceeEE
Confidence 999988 889999999999999999999866 42 11 122223333 555 4669888888999999
Q ss_pred ecHHHHHhhcCC-CCccccCC-----C--CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011856 327 GRRDIMEMVAPA-GPMYQAGT-----L--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (476)
Q Consensus 327 ~~~~i~~~l~~~-~~~~~~~t-----~--~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (476)
++++.+...... .+.+..++ + +.+....++..++++.+.+ +++.++..++.+++++.|++... ++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--g~~~ 370 (497)
T 3mc6_A 293 YRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP--DLDI 370 (497)
T ss_dssp CSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT--TCEE
T ss_pred ecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEE
Confidence 887766544211 01111111 1 1122223344444554433 45667777888888888877311 1111
Q ss_pred EeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc-ceEEe-CCCcHHHHHHHHHHHHHHHHH
Q 011856 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS-LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~~~~~-~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.....+.++.+.... ....++.+.|.++||.+.....+ .++++ ..+|++++++++++|++++++
T Consensus 371 ~~~~~~~~v~~~~~~--------------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 371 MGNPRYSVISFSSKT--------------LNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp CSCCCSSEEEEECTT--------------TTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEEeCCC--------------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 112345555554311 11357889999999998876533 35553 267999999999999999876
Q ss_pred h
Q 011856 474 F 474 (476)
Q Consensus 474 ~ 474 (476)
+
T Consensus 437 ~ 437 (497)
T 3mc6_A 437 L 437 (497)
T ss_dssp H
T ss_pred H
Confidence 5
No 182
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.88 E-value=2e-21 Score=194.07 Aligned_cols=217 Identities=15% Similarity=0.104 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++.+...+++++++++++ .+++++++||++|+..+++.+ ..++++|++.++.||+........... .
T Consensus 62 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~~----------~ 128 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEG-GEAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIGE----------F 128 (398)
T ss_dssp -CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGGG----------G
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHHH----------c
Confidence 367778889999988884 458888999999999999953 345678888888888854433211000 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+ ..+..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+..+
T Consensus 129 g------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 129 G------VKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp T------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred C------CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1 13455666799999999873 6899999999999999988 999999999999999999999744111
Q ss_pred ccchhhccCCCCchhhhhhhcCC-CCcE-EEEEecHHHHH-hhcCCCCcccc-CCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~t~sK~lg~-G~~i-G~~~~~~~i~~-~l~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
.. ..++....+.+++|.+++ |.|+ |++++++++++ .+.. .... .+.+.+++.++++.++++.+ +...+
T Consensus 196 ~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ---GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT---HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH---HhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 11 123443444589999994 7887 88899988765 4542 2222 24467888888888777543 34556
Q ss_pred HHHHHHHHHHHHHHH
Q 011856 372 YLNKITGELTQGIID 386 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (476)
+..++.+.+.+.|++
T Consensus 268 ~~~~~~~~l~~~L~~ 282 (398)
T 1gc0_A 268 RHCANAQVLAEFLAR 282 (398)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 667777777777765
No 183
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.88 E-value=4.2e-22 Score=197.22 Aligned_cols=304 Identities=17% Similarity=0.096 Sum_probs=190.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
++++.+++.+.+..+. .++.+...++.+.+++++ +.+++++++||++|++.+++.+ ....++.|++....|++...
T Consensus 16 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sgt~al~~~l~~l-~~~~gd~Vi~~~~~~~~~~~ 91 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW--FILGDEDKKFEQEFADYC-NVNYCIGCGNGLDALHLILKGY-DIGFGDEVIVPSNTFIATAL 91 (373)
T ss_dssp HHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEETTSCTHHHH
T ss_pred CHHHHHHHHHHHHCCC--ccCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 3456666666665542 346677788888888888 5579999999999999999953 13456788888888887443
Q ss_pred hHHhhcCCCCccCCCC-CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
.+...|..+...+.. ....+ |+++|++.+++ ++++|++ ++++|.+.+ +++|.++
T Consensus 92 -~~~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~l~~---~~~~v~~---~n~~G~~~~----l~~i~~l 146 (373)
T 3frk_A 92 -AVSYTGAKPIFVEPDIRTYNI--------------DPSLIESAITE---KTKAIIA---VHLYGQPAD----MDEIKRI 146 (373)
T ss_dssp -HHHHHSCEEEEECEETTTTEE--------------CGGGTGGGCCT---TEEEEEE---ECCTTCCCC----HHHHHHH
T ss_pred -HHHHcCCEEEEEeccccccCc--------------CHHHHHHhcCC---CCeEEEE---ECCCcCccc----HHHHHHH
Confidence 344445433221111 00000 78888888764 6777773 345777777 9999999
Q ss_pred HHHhCCEEEEeccccC-ccccccchhhccCCCCchhhhh----hhcCC-CCcEEEEEec-HHHHHhhcC---CCC-----
Q 011856 276 TKENGALLIFDEVMTG-FRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AGP----- 340 (476)
Q Consensus 276 ~~~~g~llI~DEv~~g-~r~g~~~~~~~~g~~pDi~t~s----K~lg~-G~~iG~~~~~-~~i~~~l~~---~~~----- 340 (476)
|++||++||+||+|+. .. +.....+..+|++++| |.+++ |. .|+++++ +++++.+.. .+.
T Consensus 147 ~~~~~~~li~D~a~~~g~~----~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 221 (373)
T 3frk_A 147 AKKYNLKLIEDAAQAHGSL----YKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYH 221 (373)
T ss_dssp HHHHTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTB
T ss_pred HHHcCCEEEEECCcccCCE----ECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCc
Confidence 9999999999999962 22 1122345456888766 99986 64 7888775 456555431 111
Q ss_pred -ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEecCCCcCchh
Q 011856 341 -MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFED 418 (476)
Q Consensus 341 -~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~ 418 (476)
...+.++..+++.++++...++.+ +++.++.+++.+++.+.|.++. ..++.... ....+..+.+...
T Consensus 222 ~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 290 (373)
T 3frk_A 222 HIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIRSE------- 290 (373)
T ss_dssp CCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEEES-------
T ss_pred cccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEEeC-------
Confidence 111234456777777766665533 3466666777777776665432 11110000 1111111111110
Q ss_pred hcccchHHHHHHHHHHHHCCeEeccCCC---------------------------cceEEe--CCCcHHHHHHHHHHHHH
Q 011856 419 AKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEK 469 (476)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~~~~~--~~~t~e~i~~~~~~l~~ 469 (476)
...++.+.|.++||.+++... ..++++ ..+|++|+++++++|++
T Consensus 291 -------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 291 -------KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp -------SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 135788899999999885431 124664 57799999999999987
Q ss_pred HHH
Q 011856 470 VKM 472 (476)
Q Consensus 470 ~~~ 472 (476)
+..
T Consensus 364 ~~~ 366 (373)
T 3frk_A 364 WKL 366 (373)
T ss_dssp CC-
T ss_pred Hhh
Confidence 654
No 184
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.88 E-value=2.4e-21 Score=193.41 Aligned_cols=323 Identities=11% Similarity=0.049 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHHHhcCCC-CCC----CHHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHH-Hhcc-CCceEEEE
Q 011856 117 DDQVLAALGETMKKGTSF-GAP----CLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLA-RAFT-GRERIIKF 187 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~-~~~----~~~~~~la~~l~~~~~~~e--~v~~~~sGseA~~~al~~a-r~~~-~~~~ii~~ 187 (476)
-|.|++|....++..... +.| .++++++++.+.......+ ...-+.+|+.|+..++.+. +.+. +++.|++.
T Consensus 64 l~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip 143 (420)
T 4h51_A 64 LRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLS 143 (420)
T ss_dssp CHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEE
T ss_pred CHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 378888887777664433 223 3445555554432211222 3455889999998888754 3343 56779999
Q ss_pred eCCCCCCchhHHhhcCCC-CccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+++|..+. ..+...|.. +....+.... ... .|.+.+.+.++..++...+++..+.+|++|.....
T Consensus 144 ~P~w~~y~-~i~~~aG~~~V~~~~~~~~~---------~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~- 209 (420)
T 4h51_A 144 DPTWPNHY-GVVKAAGWKNICTYAYYDPK---------TVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQ- 209 (420)
T ss_dssp ESCCTHHH-HHHHHTTCCCEEEEECEEGG---------GTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCH-
T ss_pred cCCchhHH-HHHHHcCCeEEEeecccccc---------ccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCH-
Confidence 99886643 444444432 2111110000 000 16788888887655667777777777788877654
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccc----cchhh-ccCCCCchh---hhhhhcC-CCCcEEEEEecHHHHHhhcC
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAY----GGAQE-YFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~----~~~~~-~~g~~pDi~---t~sK~lg-~G~~iG~~~~~~~i~~~l~~ 337 (476)
+.+++|.++|+++++++|+||+|.||..+. .+... ..+..+.++ +|||.++ .|+|+||+++..+..+....
T Consensus 210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 449999999999999999999999983321 11111 112222333 7999999 79999999775443222110
Q ss_pred ---CCCccccCCC-CCcHHHHHHHHHHHHH--h----c-C-CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEE
Q 011856 338 ---AGPMYQAGTL-SGNPLAMTAGIHTLKR--L----K-E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (476)
Q Consensus 338 ---~~~~~~~~t~-~~~~~~~aaa~aal~~--~----~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (476)
.-.....+++ +.+..++.++...+.. + + + +.++++++++++.+.+.|++++....+....+..|.|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 0001111233 3444555555544431 0 1 1 334555666666666666665322111111234455543
Q ss_pred EEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEEeCC-CcHHHHHHHHHHHHHHHHHhh
Q 011856 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~-~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+-+. .+.++.|.++||++.+++ |++++ .+++.|+.++++|.++++++.
T Consensus 370 ~gls------------------~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 370 LGLS------------------KAQCEYCQNHNIFITVSG----RANMAGLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp CCCC------------------HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHHHHHHHHHHHC---
T ss_pred cCcC------------------HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 3221 233467789999998865 88765 599999999999999998764
No 185
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.88 E-value=6.5e-21 Score=191.26 Aligned_cols=301 Identities=13% Similarity=0.075 Sum_probs=194.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 111 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 111 ~~lG~~~p~v~~a~~~~l~~~~~~~-~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
..+++.+|+..+++.+ ...+..|+ ...+...++++++++++ +.+++++++||++|++.+++.+ ..++++|++.++
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALE-GALEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4567776665555443 22222232 24577889999999988 5569999999999999999943 345678888888
Q ss_pred CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHH
Q 011856 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (476)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (476)
.|++.......... ..+ .++..++. |+++|++.+++ ++++|+++++++++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~~----------~~g------~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVLS----------LMG------VTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTTT----------TTT------CEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHHH----------HcC------CEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCccccc----H
Confidence 88764333211000 011 13444554 48999998864 6899999999999999988 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcC-CCCcEEEEEecH----------------
Q 011856 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRR---------------- 329 (476)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~~~~~~---------------- 329 (476)
++|.++|++||+++|+||+|+++ ... ...+..+|++ +++|.++ +|.|+|+++..+
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 99999999999999999999754 111 1223346776 4899998 478899886543
Q ss_pred ------------HHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe
Q 011856 330 ------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (476)
Q Consensus 330 ------------~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (476)
++.+.++... .... ....+|..++.+...++.+ +...++..++.+++.+.|.+. +.+..+
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~~-~~~~-g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v 306 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTLG-LSLC-GMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKAL 306 (412)
T ss_dssp -----HHHHGGGHHHHHHHHHH-TTTT-CCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEE
T ss_pred cccchhhccchHHHHHHHHHHH-HHhc-CCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEE
Confidence 3334333100 0111 2245777777766666544 334555667777887777653 211111
Q ss_pred ------------------eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--------------
Q 011856 398 ------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------- 445 (476)
Q Consensus 398 ------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------- 445 (476)
++.|.++.+.+ .+ ...+.+.+.+.||++ .+.
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~---------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-GD---------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS---------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-CC---------------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 24677888887 32 134556666788887 431
Q ss_pred ----------------CcceEE--eCCCcHHHHHHHHHHHHH
Q 011856 446 ----------------FEAGFT--SLAHSSDDIQHTITAAEK 469 (476)
Q Consensus 446 ----------------~~~~~~--~~~~t~e~i~~~~~~l~~ 469 (476)
...+|+ ...+++++++.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 123455 456688888888888764
No 186
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.88 E-value=3e-22 Score=203.23 Aligned_cols=311 Identities=11% Similarity=0.084 Sum_probs=199.2
Q ss_pred cCCCCcHHHHHHHHHH----HHhc-CCC-CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEE
Q 011856 112 IIGHADDQVLAALGET----MKKG-TSF-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERII 185 (476)
Q Consensus 112 ~lG~~~p~v~~a~~~~----l~~~-~~~-~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii 185 (476)
+.|-.++.|.++.... .+.+ ..| .+..+...++++++++++ +.+++++++||++|+..+++ ...+++.||
T Consensus 100 ~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~-g~~~~i~~~sGt~al~~~l~---~~~~Gd~Vi 175 (464)
T 1ibj_A 100 PFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIV 175 (464)
T ss_dssp TTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEE
T ss_pred CCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEEE
Confidence 3343456666665432 1122 112 134667889999999988 45689999999999988876 455678899
Q ss_pred EEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCC
Q 011856 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
+.++.||+......... ...+..+..++.+|+++|++.++. ++++|++++++|++|.+.+
T Consensus 176 ~~~~~y~~~~~~~~~~~----------------~~~G~~v~~v~~~d~~~l~~~i~~---~tk~v~l~~p~NptG~v~~- 235 (464)
T 1ibj_A 176 AGDDVYGGSDRLLSQVV----------------PRSGVVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQISD- 235 (464)
T ss_dssp EESSCCHHHHHHHHHTS----------------GGGTCEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCCCC-
T ss_pred EECCCchhHHHHHHHHH----------------HHcCCEEEEeCCCCHHHHHHHhcc---CceEEEEeCCCCCCCEeec-
Confidence 99988887432210000 011124566777799999999863 6899999999999999997
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcCC--CCcEEEEEec-HHHHHhhcCCCC
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGP 340 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg~--G~~iG~~~~~-~~i~~~l~~~~~ 340 (476)
+++|.++|++||++||+||+|... ..+. ......|++ +++|.+++ |+++|+++++ +++++.+..
T Consensus 236 ---l~~i~~la~~~gi~livDea~~~g---~~~~--~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~--- 304 (464)
T 1ibj_A 236 ---IRKISEMAHAQGALVLVDNSIMSP---VLSR--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF--- 304 (464)
T ss_dssp ---HHHHHHHHHTTTCEEEEECTTTCT---TTCC--GGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---
T ss_pred ---HHHHHHHHHHcCCEEEEECCCccc---ccCC--hhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH---
Confidence 999999999999999999999531 1111 111235766 69999985 8999999998 478777652
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh----------hhcCCc----eEeeeeceeEEE
Q 011856 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG----------KKAGHA----ICGGYISGMFGF 406 (476)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~~~----~~v~~~g~~~~i 406 (476)
.......+.+++.+.+++++|+.+. ...++..++...+.+.|++.. .+++.. ...++.|.++++
T Consensus 305 ~~~~~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~ 382 (464)
T 1ibj_A 305 LQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382 (464)
T ss_dssp HHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEE
T ss_pred HHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEE
Confidence 1111234567888888877775321 112222233333333333210 111100 012345778888
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------------------------CcceEEeCCCcHHH
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTSLAHSSDD 459 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~~~~~~~~t~e~ 459 (476)
.+.+ ......+.+.|...||.+..+. ...+|+++.. |+
T Consensus 383 ~l~~-------------~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--ed 447 (464)
T 1ibj_A 383 ITGS-------------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--ED 447 (464)
T ss_dssp ECSC-------------HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SC
T ss_pred EECC-------------HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CC
Confidence 8731 1122456677766777665542 2357887776 89
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
+++++++|+++++++
T Consensus 448 i~~li~~L~~al~~~ 462 (464)
T 1ibj_A 448 VDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998753
No 187
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.88 E-value=5.4e-22 Score=196.05 Aligned_cols=301 Identities=14% Similarity=0.047 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchh
Q 011856 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (476)
Q Consensus 118 p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (476)
|++.+++.+++..+ ..++.+...++.+.+++++ +.+++++++||++|++.+++.++ ..+++.|++...+|++....
T Consensus 16 ~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~-~~~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~~~~~~~~~~ 91 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG--QYILGPEVTELEDRLADFV-GAKYCISCANGTDALQIVQMALG-VGPGDEVITPGFTYVATAET 91 (367)
T ss_dssp HHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHH
T ss_pred HHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHH
Confidence 45666666666654 2336677788888898888 55699999999999999999642 34567888888888774443
Q ss_pred HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHH
Q 011856 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (476)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (476)
+...|..+...+.....+ .-|+++|++.+++ ++++|++++ ..|...+ +++|.++|+
T Consensus 92 -~~~~G~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~~i~~la~ 147 (367)
T 3nyt_A 92 -VALLGAKPVYVDIDPRTY-------------NLDPQLLEAAITP---RTKAIIPVS---LYGQCAD----FDAINAIAS 147 (367)
T ss_dssp -HHHTTCEEEEECBCTTTC-------------SBCGGGTGGGCCT---TEEEECCBC---GGGCCCC----HHHHHHHHH
T ss_pred -HHHcCCEEEEEecCCccC-------------CcCHHHHHHhcCc---CCcEEEeeC---CccChhh----HHHHHHHHH
Confidence 344444332221111000 0178888888853 678777433 4566666 999999999
Q ss_pred HhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCC-CCcEEEEEe-cHHHHHhhcCCCCc--------
Q 011856 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGG-RRDIMEMVAPAGPM-------- 341 (476)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~-G~~iG~~~~-~~~i~~~l~~~~~~-------- 341 (476)
+||++||+||+|+ |. ..+. ..+...|++++| |.+++ |. .|++++ ++++++.+......
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~ 221 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHH 221 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEE
T ss_pred HcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCcee
Confidence 9999999999995 44 3332 122223887665 99997 76 888877 47777665421110
Q ss_pred -cccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE-eeeeceeEEEEEecCCCcCchhh
Q 011856 342 -YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDA 419 (476)
Q Consensus 342 -~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~ 419 (476)
..+.++..+++.++++++.++.+ +++.++.+++.+++++.|.++....+.... ......++.+.+.
T Consensus 222 ~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 222 IRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS----------
T ss_pred eccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC----------
Confidence 11346778899999888888755 456777888888888888876322111100 0111112222221
Q ss_pred cccchHHHHHHHHHHHHCCeEeccCCC-c-----------------------ceEEe--CCCcHHHHHHHHHHHHHH
Q 011856 420 KKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------------AGFTS--LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~-----------------------~~~~~--~~~t~e~i~~~~~~l~~~ 470 (476)
....+.+.|.++||.++.... + .++++ ...|++|++++++.++++
T Consensus 290 ------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 125788899999998875532 0 12454 467999999999999865
No 188
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=8e-22 Score=196.59 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhh----cCCCCccCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGL 211 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~ 211 (476)
+.++...+|+++++++. +.+.+++++||++|++.++. ....++.|++.++.||+........ .|.
T Consensus 64 ~~~p~~~~l~~~la~l~-g~~~~~~~~sG~~Ai~~~~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~------- 132 (400)
T 3nmy_A 64 THNPTRFAYERCVAALE-GGTRAFAFASGMAATSTVME---LLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL------- 132 (400)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHh-CCCCEEEecCHHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe-------
Confidence 46777788888888887 45689999999999998544 3445678888888888754433221 121
Q ss_pred CCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
.+..++.+|+++|++.+++ ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.
T Consensus 133 ------------~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 133 ------------DFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp ------------EEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred ------------EEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 3566777899999999864 6899999999999999998 99999999999999999999952
Q ss_pred ccccccchhhccCCCCchhhhhhhcCC-CCcEEE--EE-ecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 292 FRLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--YG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~t~sK~lg~-G~~iG~--~~-~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
. .......+|..+.+.+++|.+++ |.++|+ ++ .++++++.+.. .....+...+|+.+..++..++.+ +
T Consensus 194 ~---~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~ 265 (400)
T 3nmy_A 194 P---MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--P 265 (400)
T ss_dssp H---HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--H
T ss_pred c---ccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--H
Confidence 2 11111123444444579999995 566655 44 47778777752 223334567888887777766543 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEe------------------eeeceeEEEEEe
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFT 409 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~ 409 (476)
...++..++..++.+.|++ ++.+..+ ++.|.|+++++.
T Consensus 266 ~r~~~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 3445556666666666553 4444333 678999999995
No 189
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.88 E-value=1.8e-21 Score=195.54 Aligned_cols=313 Identities=11% Similarity=0.036 Sum_probs=180.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC----------CCHHHHH-HHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceE
Q 011856 116 ADDQVLAALGETMKKGTSFGA----------PCLLENV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~----------~~~~~~~-la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (476)
.||+|.+|+.+++.+....++ ..+...+ ..+++++.++.....++++||++|++.+++.. ..+++.|
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~--~~~gd~v 119 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LQPGDTV 119 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHh--cCCCCEE
Confidence 599999999998854221111 1122333 33677777742222234678899999999853 3455667
Q ss_pred EEEeCCCCCCchhHH--hhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcc
Q 011856 185 IKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (476)
Q Consensus 185 i~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (476)
++..+.|++...... ...+..+....++.... ...|+++|++.++++ ++++|++++.++ |..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~ 183 (420)
T 3gbx_A 120 LGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDES------------GKIDYDEMAKLAKEH--KPKMIIGGFSAY--SGV 183 (420)
T ss_dssp EEEEEC------------CHHHHSEEEEEEECTT------------CSCCHHHHHHHHHHH--CCSEEEECCTTC--CSC
T ss_pred EecchhhcceeccchhhhhcccceeEEeccCCcc------------CCcCHHHHHHHHHhc--CCeEEEEecCcc--CCc
Confidence 776666554221111 11111110000000000 013899999999753 467777754222 335
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhh--hhhhcCCCCcEEEEEecH---HHHHhh
Q 011856 263 APKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR---DIMEMV 335 (476)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t--~sK~lg~G~~iG~~~~~~---~i~~~l 335 (476)
.+ +++|+++|++||++||+||+| .|+ +.+..... .. .+|+++ +||+++ |.+.|++++++ ++++.+
T Consensus 184 ~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~~ 255 (420)
T 3gbx_A 184 VD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKKL 255 (420)
T ss_dssp CC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHHH
T ss_pred cC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHHh
Confidence 55 999999999999999999998 455 44432211 11 278775 779997 55679999887 777766
Q ss_pred cCCCCccccCCCCC-cHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eeceeEEEEEec
Q 011856 336 APAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTE 410 (476)
Q Consensus 336 ~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~ 410 (476)
.. ....++++. +...++++..++..+.+ +++.++++++.+++++.|.+. ++..... ..+.++++.+..
T Consensus 256 ~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~ 328 (420)
T 3gbx_A 256 NS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFLLDLVD 328 (420)
T ss_dssp HH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGG
T ss_pred hh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEEEEcCC
Confidence 52 112222222 33333443434543322 456778888888888888763 2211111 356677777642
Q ss_pred CCCcCchhhcccchHHHHHHHHHHHHCCeEecc-------C---CCcceEEeCC------CcHHHHHHHHHHHHHHHHH
Q 011856 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-------S---QFEAGFTSLA------HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~---~~~~~~~~~~------~t~e~i~~~~~~l~~~~~~ 473 (476)
... ....+.+.|.++||++.+ + +...+|+++. .+++++++++++|++++++
T Consensus 329 ~~~------------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 329 KNL------------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp GTC------------CHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCC------------CHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 110 124567778889999987 2 1223677432 5689999999999998764
No 190
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.88 E-value=3.1e-21 Score=190.84 Aligned_cols=312 Identities=14% Similarity=0.087 Sum_probs=196.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHh-ccCCceEEEEeCCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGH 194 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~-~~~~~~ii~~~~~yhg~ 194 (476)
.+|++.+++.++++++. ..+.+...++.+.+++++ +.+++++++||++|++.+++.++. ..++++|++.+++|++.
T Consensus 11 ~~~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT 87 (375)
T ss_dssp CCHHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH
T ss_pred CCHHHHHHHHHHHHcCc--ccCChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH
Confidence 58999999999987642 335677788899998888 455999999999999999996421 34567888888888875
Q ss_pred chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
... +...|..+...+... .+ ..|+++|++.+++ ++++|++.+. +|.+.+ +++|.+
T Consensus 88 ~~~-~~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~~----l~~i~~ 142 (375)
T 2fnu_A 88 ANM-LLESGYTPVFAGIKN-DG-------------NIDELALEKLINE---RTKAIVSVDY---AGKSVE----VESVQK 142 (375)
T ss_dssp HHH-HHHTTCEEEECCBCT-TS-------------SBCGGGSGGGCCT---TEEEEEEECG---GGCCCC----HHHHHH
T ss_pred HHH-HHHCCCEEEEeccCC-CC-------------CCCHHHHHhhcCc---CceEEEEeCC---cCCccC----HHHHHH
Confidence 543 333444332221110 00 0177888887753 5676555444 678877 999999
Q ss_pred HHHHhCCEEEEeccccCccccccchhhccCCCCc--hhhhh--hhcCCCCcEEEEEe-c-HHHHHhhcCCCC-cc-----
Q 011856 275 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPD--LTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGP-MY----- 342 (476)
Q Consensus 275 l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pD--i~t~s--K~lg~G~~iG~~~~-~-~~i~~~l~~~~~-~~----- 342 (476)
+|++||++||+||+|+...... ...++..+| +.++| |.++.| +|++++ + +++++.+.+... ..
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQ---NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDF 217 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEET---TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSS
T ss_pred HHHHcCCEEEEECccccCCeEC---CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccccc
Confidence 9999999999999996431111 112232234 44788 999764 777766 3 677766542110 00
Q ss_pred -------ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh-hhcCCce-EeeeeceeEEEEEecCCC
Q 011856 343 -------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG-KKAGHAI-CGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 343 -------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~-~v~~~g~~~~i~~~~~~~ 413 (476)
...++..+++.++++...++.+ ++..++.+++.+++.+.|+++. ....... ...+.+.++++.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 293 (375)
T 2fnu_A 218 FEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK-- 293 (375)
T ss_dssp SCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG--
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc--
Confidence 1112355677666665544322 4566777777777777776531 0110000 0011233445655321
Q ss_pred cCchhhcccchH-HHHHHHHHHHHCCeEeccCC-----------------C--------cceEEeCC--CcHHHHHHHHH
Q 011856 414 YNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTSLA--HSSDDIQHTIT 465 (476)
Q Consensus 414 ~~~~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~~-----------------~--------~~~~~~~~--~t~e~i~~~~~ 465 (476)
.. ...++.+.|.++||.+.... . ..+|+++. +|++|++++++
T Consensus 294 ----------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~ 363 (375)
T 2fnu_A 294 ----------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH 363 (375)
T ss_dssp ----------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ----------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHH
Confidence 00 23578888999999988311 0 24677644 59999999999
Q ss_pred HHHHHHHHh
Q 011856 466 AAEKVKMRF 474 (476)
Q Consensus 466 ~l~~~~~~~ 474 (476)
+|+++++++
T Consensus 364 ~l~~~~~~~ 372 (375)
T 2fnu_A 364 SVLKTFESF 372 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 191
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=8.5e-21 Score=195.10 Aligned_cols=340 Identities=14% Similarity=0.060 Sum_probs=204.2
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACM 169 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~-----~~~~~~~la~~l~~~~~-~-~e~v~~~~sGseA~~ 169 (476)
.++.|+|+..+ +..++.+.+++.....+.....+ ..+++.++.++++++++ . .+.++|++||++|+.
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~ 172 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQ 172 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHH
Confidence 34456655543 33578888887665544221111 23566677888999885 2 378999999999999
Q ss_pred HHHHHHHhc------------cC-----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-
Q 011856 170 GVLRLARAF------------TG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN- 231 (476)
Q Consensus 170 ~al~~ar~~------------~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 231 (476)
.+++.+|.. .+ ++..|+.....|......+...|.+. .+++.+|.+
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~----------------~~v~~v~~~~ 236 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE----------------KAVMTVDANA 236 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG----------------GGEEEECBCT
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc----------------ccEEEEecCC
Confidence 999987632 11 23255555556665555554444321 012223322
Q ss_pred ----CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhcc
Q 011856 232 ----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (476)
Q Consensus 232 ----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (476)
|+++|++.+++. +..+.+|+++..++++|.+.+ +++|.++|++||++|++|++|.++ .... +.....
T Consensus 237 ~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~ 311 (497)
T 2qma_A 237 DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLK 311 (497)
T ss_dssp TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGT
T ss_pred CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhc
Confidence 788999988642 112446677666667888888 999999999999999999999877 4433 322234
Q ss_pred CC-CCchhh--hhhhcCCCCcEEEEEecHH-HHHhhcCCCCcc-ccCCCCCcHHHH----------HHHHHHHHHhcC--
Q 011856 304 GV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IMEMVAPAGPMY-QAGTLSGNPLAM----------TAGIHTLKRLKE-- 366 (476)
Q Consensus 304 g~-~pDi~t--~sK~lg~G~~iG~~~~~~~-i~~~l~~~~~~~-~~~t~~~~~~~~----------aaa~aal~~~~~-- 366 (476)
++ .+|+++ ++|.+++++++|+++++++ .++.+.....+. ...+...++... .+..++++.+..
T Consensus 312 gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g 391 (497)
T 2qma_A 312 GVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKA 391 (497)
T ss_dssp TGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHH
T ss_pred CcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHH
Confidence 55 678775 4899988789999987644 445443211111 111111122211 122334554432
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC-
Q 011856 367 -PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS- 444 (476)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~- 444 (476)
+++.++..++.+++.+.|+++. ++.......+.++.+.+..... .......++.+.|.++|+++.+.
T Consensus 392 ~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~ 460 (497)
T 2qma_A 392 LGDMYDHLLAQTLEVADMIRTND---QFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGET 460 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT---TEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEee
Confidence 3566777778888888777531 1111112345577776643210 01122356778888999987652
Q ss_pred ---CCcceEEeC---CCcHHHHHHHHHHHHHHHHHh
Q 011856 445 ---QFEAGFTSL---AHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 445 ---~~~~~~~~~---~~t~e~i~~~~~~l~~~~~~~ 474 (476)
+...+|+++ .+|++|+++++++|+++++++
T Consensus 461 ~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 461 IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 223567654 679999999999999998764
No 192
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.87 E-value=8.1e-21 Score=189.47 Aligned_cols=323 Identities=16% Similarity=0.060 Sum_probs=199.2
Q ss_pred cHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCc
Q 011856 117 DDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~-~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~ 195 (476)
+|++.+++.+.++++ +.. ..+...++.+.+++++ +.+++++++||++|++.+++.++ ..++++|++.+++|++..
T Consensus 11 ~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~~~ 86 (394)
T 1o69_A 11 GGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASV 86 (394)
T ss_dssp -CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGT
T ss_pred CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHH
Confidence 467888888888763 221 1355678888888877 56899999999999999999531 345678999999998865
Q ss_pred hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
..+. ..|..+...+... .+ ..|+++|++.+++.++++++|++++ ++|...+ +++|.++
T Consensus 87 ~~~~-~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l 144 (394)
T 1o69_A 87 APIC-YLKAKPVFIDCDE-TY-------------NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEI 144 (394)
T ss_dssp HHHH-HTTCEEEEECBCT-TS-------------SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHH
T ss_pred HHHH-HcCCEEEEEEeCC-CC-------------CcCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHH
Confidence 4443 3443332211110 00 1289999999975433477788776 3565555 9999999
Q ss_pred HHHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEec-HHHHHhhcCCCCcc-------c
Q 011856 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVAPAGPMY-------Q 343 (476)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~-~~i~~~l~~~~~~~-------~ 343 (476)
|++||++||+||+|+ |+ ..+.... . ++ ..|+.++ +|.++ |.++|+++++ +++++.+....... .
T Consensus 145 ~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 220 (394)
T 1o69_A 145 CKENDIVLIEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYE 220 (394)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred HHHcCCEEEEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcccc
Confidence 999999999999997 76 4432110 1 11 3577777 56665 5689999995 78877764211110 0
Q ss_pred ----cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeece--eEEEEEecCC-----
Q 011856 344 ----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG--MFGFFFTEGP----- 412 (476)
Q Consensus 344 ----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~--~~~i~~~~~~----- 412 (476)
+..+..+++.++++++.++.+ ++..++.+++.+++.+.|.++ ........ ...+. ++.+.+....
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFLDELE-NSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECCCCCT-TEECCCSSEEEEESCCGGGSCC
T ss_pred ccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccccCCCC-CCcceeEEEEEEecchhhcccc
Confidence 011124667777766655544 346778888888888888765 22110000 00122 3455553110
Q ss_pred CcCchhhccc---chHHHHHHHHHHHHCCeEeccCCCc------------------------ceEE--eCCCcHHHHHHH
Q 011856 413 VYNFEDAKKS---ETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFT--SLAHSSDDIQHT 463 (476)
Q Consensus 413 ~~~~~~~~~~---~~~~~~~~~~~l~~~Gv~~~~~~~~------------------------~~~~--~~~~t~e~i~~~ 463 (476)
..++..+..+ ......++.+.|.++||.++++..+ .+++ ...+|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~ 376 (394)
T 1o69_A 297 CQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEI 376 (394)
T ss_dssp CCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHH
Confidence 0000000000 0123467888999999999876321 0111 234799999999
Q ss_pred HHHHHHHHHH
Q 011856 464 ITAAEKVKMR 473 (476)
Q Consensus 464 ~~~l~~~~~~ 473 (476)
+++|++++..
T Consensus 377 ~~~l~~~~~~ 386 (394)
T 1o69_A 377 SKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 193
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.87 E-value=4.4e-21 Score=186.61 Aligned_cols=275 Identities=13% Similarity=0.028 Sum_probs=181.1
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh---hcCCCCccCCCCCCCCCCC
Q 011856 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPK 219 (476)
Q Consensus 143 ~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~ 219 (476)
+|++.+++++ +.++.++++||++|+..+++.. ..++++|++.++.||+....... ..|.
T Consensus 2 ~l~~~la~~~-g~~~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--------------- 63 (331)
T 1pff_A 2 ALEGKIAKLE-HAEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV--------------- 63 (331)
T ss_dssp HHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC---------------
T ss_pred hHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC---------------
Confidence 3555555555 4457788888999999999953 34567899998888885443321 1222
Q ss_pred CCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCccccccc
Q 011856 220 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGG 298 (476)
Q Consensus 220 ~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~r~g~~~ 298 (476)
++..++..|++++++.+++ ++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+.....
T Consensus 64 ----~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~~- 131 (331)
T 1pff_A 64 ----EVDFIDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTNP- 131 (331)
T ss_dssp ----EEEEECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCCG-
T ss_pred ----EEEEeCCCCHHHHHHhhcC---CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCCh-
Confidence 2444555688899988863 6889999999999999998 9999999999 9999999999963311111
Q ss_pred hhhccCCCCchhhhhhhcCC-CCc-EEEEEecH-HHHHhhcCCCCcccc-CCCCCcHHHHHHHHHHHHHhcCCCHHHHHH
Q 011856 299 AQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRR-DIMEMVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (476)
Q Consensus 299 ~~~~~g~~pDi~t~sK~lg~-G~~-iG~~~~~~-~i~~~l~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (476)
. .++....+.+++|.+++ |.| +|++++++ ++++.+.+. ... .+.+.+++.+.++.++++.+. ...++..
T Consensus 132 -~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 204 (331)
T 1pff_A 132 -L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQG---IKDITGAIISPHDAWLITRGTLTLD--MRVKRAA 204 (331)
T ss_dssp -G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred -h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHH---HHhhcCCCCCHHHHHHHHcCcchHH--HHHHHHH
Confidence 1 23433333479999984 788 79999998 898888742 233 345678888888777776442 2334445
Q ss_pred HHHHHHHHHHHHHh----------hhcCCc----eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE
Q 011856 375 KITGELTQGIIDAG----------KKAGHA----ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (476)
Q Consensus 375 ~~~~~l~~~L~~~~----------~~~~~~----~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (476)
++.+.+.+.|++.. .+.+.. ...++.|.++.+.+.+ ...+.+.|.++||+
T Consensus 205 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 205 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------------LEKAKKVLDNCHVV 268 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------------HHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----------------HHHHHHHHHhCCCc
Confidence 55555555554421 001100 0113457787877631 13566777888997
Q ss_pred eccCC------------------------------CcceEEe--CCCcHHHHHHHHHHHHHH
Q 011856 441 FAPSQ------------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (476)
Q Consensus 441 ~~~~~------------------------------~~~~~~~--~~~t~e~i~~~~~~l~~~ 470 (476)
+.+.. ...+|++ ..+++++++.++++|+++
T Consensus 269 ~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 269 SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 64321 2346664 567889999888888754
No 194
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.87 E-value=1.4e-21 Score=194.72 Aligned_cols=306 Identities=17% Similarity=0.128 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCch
Q 011856 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (476)
++++.+++.+.+..+. +..+.+...++.+.+++++ +.+++++++||++|++.+++.+. ..+++.|++.+++|++...
T Consensus 35 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~-~~~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~~~ 111 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-ISSVGRFIVEFEKAFADYC-GVKHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIASAN 111 (391)
T ss_dssp CSSHHHHHHHHHHHTC-CSSCSHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCC-ccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHHHH
Confidence 4778888888887643 2235777888999999888 55699999999999999999642 4566789998888888644
Q ss_pred hHHhhcCCCCccCCCC-CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH
Q 011856 197 PFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (476)
Q Consensus 197 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (476)
.+ ...|..+...+.. ....+ |+++|++.+++ ++++|+++ +++|.+.+ +++|.++
T Consensus 112 ~~-~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~~~~---~~~~v~~~---n~tG~~~~----~~~i~~l 166 (391)
T 3dr4_A 112 SV-TYCGATPVLVDNDPRTFNL--------------DAAKLEALITP---RTKAIMPV---HLYGQICD----MDPILEV 166 (391)
T ss_dssp HH-HHTTCEEEEECBCTTTCSB--------------CGGGSGGGCCT---TEEEECCB---CGGGCCCC----HHHHHHH
T ss_pred HH-HHCCCEEEEEecCccccCc--------------CHHHHHHhcCC---CceEEEEE---CCCCChhh----HHHHHHH
Confidence 33 3344433222111 00010 77888887763 67777743 35677777 9999999
Q ss_pred HHHhCCEEEEecccc-Cc-cccccchhhccCCCCchhhhh----hhcCCCCcEEEEEec-HHHHHhhcC---CCC-----
Q 011856 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGP----- 340 (476)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~t~s----K~lg~G~~iG~~~~~-~~i~~~l~~---~~~----- 340 (476)
|++||++||+||+|+ |. ..+. ..+..+|++++| |++++| ++|+++++ +++++.+.. .+.
T Consensus 167 ~~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 240 (391)
T 3dr4_A 167 ARRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRR 240 (391)
T ss_dssp HHHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTST
T ss_pred HHHcCCEEEEECcccccceECCe-----eecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCc
Confidence 999999999999996 33 2221 233345777655 999764 68888765 456655431 110
Q ss_pred ---ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE-----eeeeceeEEEEEecCC
Q 011856 341 ---MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-----GGYISGMFGFFFTEGP 412 (476)
Q Consensus 341 ---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----v~~~g~~~~i~~~~~~ 412 (476)
...+..+..+++.+++++..++.+ ++..++.+++.+++++.|.++ ...++.. ....+.++++.+....
T Consensus 241 ~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 316 (391)
T 3dr4_A 241 YWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGL 316 (391)
T ss_dssp TCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSC
T ss_pred ccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEEEECCcc
Confidence 001122456677776666655433 457778888888888888765 2221111 1223334566654210
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc------------------------ceEEe--CCCcHHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFTS--LAHSSDDIQHTITA 466 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------------------------~~~~~--~~~t~e~i~~~~~~ 466 (476)
.....++.+.|.++||.++++..+ .++++ ..+|++||++++++
T Consensus 317 -----------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~ 385 (391)
T 3dr4_A 317 -----------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAA 385 (391)
T ss_dssp -----------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHH
Confidence 011357889999999999876311 23443 56799999999999
Q ss_pred HHHHH
Q 011856 467 AEKVK 471 (476)
Q Consensus 467 l~~~~ 471 (476)
|++++
T Consensus 386 l~~~l 390 (391)
T 3dr4_A 386 LDQVL 390 (391)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98754
No 195
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.86 E-value=2.8e-21 Score=190.06 Aligned_cols=307 Identities=11% Similarity=0.010 Sum_probs=197.0
Q ss_pred CcHHHHHHHHHHHHhcC--C-CCCC--CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEe
Q 011856 116 ADDQVLAALGETMKKGT--S-FGAP--CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~--~-~~~~--~~~~~~la~~l~~~~~--~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (476)
.+|++.+++.+.+.+.. . +.++ .+...++.++++++++ ..+++++++||++|+..+++ .+.++ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~---~l~~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ---NCVEK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH---HHCSS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH---hccCC-cEEEEc
Confidence 47899999988887643 1 1112 1456788888888885 35789999999999999999 44455 777776
Q ss_pred CCCCCCchh-HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 189 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 189 ~~yhg~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
..+++.... .....|..+...+...... -|+++|+ + .+++++|+++++++++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKG--------------FYPADIT--V---PADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCC--------------CCGGGCC--C---CTTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCC--------------CCHHHHh--c---cCCccEEEEEcCCCCcceeCC---
Confidence 666652221 2223343332211111111 1677776 2 236788888888888999998
Q ss_pred HHHHHHHHHHHh-CCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCCCC---
Q 011856 268 FLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--- 340 (476)
Q Consensus 268 ~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~~~--- 340 (476)
+++|.++|++| |+++|+||+|... ... +.. ..|++ +++|.++++..+|++++++++++.+.+...
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~--~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~ 220 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLPYPKF-----DWT--KIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRK 220 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTT--SCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccCCccc-----Chh--HCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCC
Confidence 99999999999 9999999999632 111 001 15665 577999843346888899998776652100
Q ss_pred ---cc------------ccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH-hhhcCCceEeeeec
Q 011856 341 ---MY------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA-GKKAGHAICGGYIS 401 (476)
Q Consensus 341 ---~~------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~v~~~g 401 (476)
.+ ....++.+..++.+..++++.+.+ ++..++.+++.+++.+.|+++ ......+......+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 300 (362)
T 3ffr_A 221 SIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSM 300 (362)
T ss_dssp CCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCS
T ss_pred CCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCC
Confidence 00 001345677777777788876543 456666777777777777654 11110000001234
Q ss_pred eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
.++++.+.+ ...++.+.|.++||.+.++. ...+|++ ..++++++++++++|++++
T Consensus 301 ~~~~~~~~~---------------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 301 TTIVANTTM---------------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SEEEEEESS---------------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEecCC---------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 555665532 13678889999999998752 3457886 4569999999999998764
No 196
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.86 E-value=3.6e-20 Score=186.55 Aligned_cols=287 Identities=16% Similarity=0.075 Sum_probs=187.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
.++...+++++++++++ .+..++++||++|+..+++.. ...+++||+.++.|++.........
T Consensus 112 ~~~~~~~l~~~lA~l~g-~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~-------------- 174 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEG-AESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 174 (445)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH--------------
Confidence 56778889999998884 457788888999999999842 3356788888888877433211000
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCe-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
...+.++..++.+|+++|++.++. ++ ++|++|+++|++|.+.+ +++|.++|++||++||+||+|+...
T Consensus 175 --~~~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~~-- 243 (445)
T 1qgn_A 175 --PKMGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATPL-- 243 (445)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT--
T ss_pred --HHcCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc--
Confidence 001124566777799999999985 45 89999999999999988 9999999999999999999995321
Q ss_pred ccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHH
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (476)
. .......+|++ +++|.+++ | +++|++++++++++.+.... ...+ ...+++.+..++..++.+ ....+
T Consensus 244 -~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~--~~~g-~~~~~~~a~~~~~~l~~l--~~r~~ 315 (445)
T 1qgn_A 244 -N--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH--HILG-GALNPNAAYLIIRGMKTL--HLRVQ 315 (445)
T ss_dssp -T--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH--HHHC-CCCCHHHHHHHHHHGGGH--HHHHH
T ss_pred -c--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH--HHhC-CCCCHHHHHHHHHhHHHH--HHHHH
Confidence 1 11233457877 58999995 3 47999999999988775211 1112 234677666665555433 22344
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cC-Cc---------eEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 372 YLNKITGELTQGIIDAGK--K--AG-HA---------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~-~~---------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
+..++.+++.+.|++... . ++ .. .++++.|.++.|++... ......+...|...
T Consensus 316 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~------------~~~~~~~l~~l~~~ 383 (445)
T 1qgn_A 316 QQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD------------LLTTAKFVDALKIP 383 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC------------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC------------HHHHHHHHHhCCCc
Confidence 555566677777765310 0 11 00 01235788999988531 12234455554323
Q ss_pred CeEeccCC---------------------------CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 438 GVYFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 438 Gv~~~~~~---------------------------~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
++.++.++ ...+|+++. .||+|.+++.|++++++
T Consensus 384 ~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 384 YIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDS 444 (445)
T ss_dssp EECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHH
T ss_pred eEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhh
Confidence 33322221 134677766 46899999999999875
No 197
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.85 E-value=2.8e-20 Score=187.08 Aligned_cols=281 Identities=16% Similarity=0.101 Sum_probs=184.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHH---hhcCCCCccCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~ 213 (476)
..+...+++++++++++ .+..++++||++|++.+++.. ..+++.||+....||+...... ...|.
T Consensus 56 ~~~~~~~l~~~la~~~g-~~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--------- 123 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEG-GKAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--------- 123 (421)
T ss_dssp BCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC---------
T ss_pred CChHHHHHHHHHHHHhC-CCceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC---------
Confidence 55677888888888884 456788888999999999953 4567889999999988655442 22222
Q ss_pred CCCCCCCCCCceeec-cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 214 SPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
.+..+ +.+|+++|++.+++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+++
T Consensus 124 ----------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~ 186 (421)
T 2ctz_A 124 ----------EVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMG 186 (421)
T ss_dssp ----------EEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGG
T ss_pred ----------EEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 35556 66689999999874 6899999999999999998 999999999999999999999545
Q ss_pred -cccccchhhccCCCCchh--hhhhhcCC-CCcEEEEEec---HHH----HHhhcCCCCccc------------------
Q 011856 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR---RDI----MEMVAPAGPMYQ------------------ 343 (476)
Q Consensus 293 -r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~iG~~~~~---~~i----~~~l~~~~~~~~------------------ 343 (476)
..+.. ++..+|++ +++|.+++ |.|+|++++. +++ ++.+.+.....+
T Consensus 187 g~~~~~-----~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r 261 (421)
T 2ctz_A 187 GYLLRP-----LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp GTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred cccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHH
Confidence 32222 23457887 78999995 7889888663 122 222321100000
Q ss_pred -----cCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEe-------------------ee
Q 011856 344 -----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------------------GY 399 (476)
Q Consensus 344 -----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-------------------~~ 399 (476)
......+++.+++++..++.+. ...++..++.+++.+.|.+. +.+..+ ++
T Consensus 262 ~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 262 VDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ----PQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC----CCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 0113567888777777765432 23445556666777666653 222222 46
Q ss_pred eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------------------------CcceEEe
Q 011856 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTS 452 (476)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~~~~~ 452 (476)
.|.++.|++.+. ......+...+...++.++.++ ...+|++
T Consensus 336 ~g~ivsf~l~~~------------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS 403 (421)
T 2ctz_A 336 PGAVLTFGLKGG------------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp CCSEEEEEETTH------------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred CceEEEEEeCCC------------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 788999998531 1223444444433343332221 1234565
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 011856 453 LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 453 ~~~t~e~i~~~~~~l~~~~ 471 (476)
+. .+++|.+++.|++++
T Consensus 404 ~g--~e~~~~li~~l~~al 420 (421)
T 2ctz_A 404 VG--LEHVEDLKAELKEAL 420 (421)
T ss_dssp CC--SSCHHHHHHHHHHHT
T ss_pred eC--CCCHHHHHHHHHHHh
Confidence 44 468889999888875
No 198
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=9e-20 Score=181.67 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++.+...++++.+++++ +.+++++++||++|++.+++ . ...+++||+..+.||+.........
T Consensus 52 ~~~~~~~~lr~~la~~~-g~~~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 114 (393)
T 1n8p_A 52 SQNPNRENLERAVAALE-NAQYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA------------- 114 (393)
T ss_dssp TCCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS-------------
T ss_pred CCChhHHHHHHHHHHHh-CCCcEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHH-------------
Confidence 35566778888888888 44578888889999999998 2 3456789998888887432211000
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccC
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTG 291 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~----g~llI~DEv~~g 291 (476)
...+.++..++.+| ++|++.++. ++++|++++++|++|.+.+ +++|.++|++| |++||+||+|++
T Consensus 115 ---~~~G~~v~~v~~~d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 115 ---NAHGVETSFTNDLL-NDLPQLIKE---NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ---TTTCSCCEEESSHH-HHHHHHSCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ---HHcCcEEEEeCCCh-HHHHHhccc---CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 00112355666667 889988863 6899999999999999998 99999999999 999999999976
Q ss_pred c-cccccchhhccCCCCchh--hhhhhcCC-CCcE-EEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc
Q 011856 292 F-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (476)
Q Consensus 292 ~-r~g~~~~~~~~g~~pDi~--t~sK~lg~-G~~i-G~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (476)
+ .. ... .+ .+|++ +++|.+++ |+|+ |+++++ +++++.+... ........++..+.++.++++.+
T Consensus 184 ~~~~-~~~---~~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~---~~~~g~~~~~~~~~~~~~~l~~~- 253 (393)
T 1n8p_A 184 PYIS-NPL---NF--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL---QNAIGAIPSPFDAWLTHRGLKTL- 253 (393)
T ss_dssp HHHC-CGG---GG--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHTTH-
T ss_pred cccC-CHH---Hc--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhccchH-
Confidence 5 32 211 12 35766 79999994 8898 888885 7888877531 11111234677777666666432
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011856 366 EPGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~ 386 (476)
+...++..++.+.+.+.|++
T Consensus 254 -~~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 254 -HLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp -HHHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHHHHHHh
Confidence 23344555556666665554
No 199
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.84 E-value=1.1e-19 Score=181.72 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=148.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
++++...+|.+.++++++ .+..++++||++|+..+++ . ...+++|++.++.|++..........
T Consensus 64 ~~~p~~~~l~~~la~~~g-~~~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~------------ 127 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDG-AKYCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVAS------------ 127 (403)
T ss_dssp --CHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGG------------
T ss_pred CCCchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHH------------
Confidence 456667788888888874 3466777789999999987 2 45667899999999875432211100
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCccc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 294 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~r~ 294 (476)
..+.++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|.++|++|| ++||+||+|.++..
T Consensus 128 ----~~G~~v~~v~~~d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 128 ----EFGLKISFVDCSKIKLLEAAITP---ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp ----GGTCEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred ----HcCCEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 01124666777799999999863 6889999999999999998 999999999999 99999999975521
Q ss_pred cccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEec-HHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 295 g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~-~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
.. .++..+|++ +++|.+++ | +++|+++++ +++++.+.. .....+...+++.+.+++.+++.+ +..
T Consensus 197 ~~-----~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r 266 (403)
T 3cog_A 197 QR-----PLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVR 266 (403)
T ss_dssp CC-----TTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHH
T ss_pred CC-----ccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHH
Confidence 11 122346776 79999984 4 689999985 788877752 222234456888888877777533 223
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIID 386 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~ 386 (476)
.++..++...+.+.|++
T Consensus 267 ~~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455555555555544
No 200
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.83 E-value=4.6e-19 Score=176.42 Aligned_cols=304 Identities=14% Similarity=0.105 Sum_probs=193.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH-----hccCCceEEEEeCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 190 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar-----~~~~~~~ii~~~~~ 190 (476)
-+|++.+++.++++++. .++.+...++.+.+++++ +.+++++++||++|++.+++.++ ...++++|++...+
T Consensus 13 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM--FTMGEYVKQYETQFAKTF-GSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 37899999999988742 335677788888888888 45589999999999999999652 13456789998889
Q ss_pred CCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHH
Q 011856 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (476)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (476)
||+....+ ...|..+...+.....+. -|+++|++.+++ ++++|++.+. .|...+ ++
T Consensus 90 ~~~~~~~~-~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~~---~g~~~~----~~ 145 (390)
T 3b8x_A 90 WSTTYYPL-QQYGLRVKFVDIDINTLN-------------IDIESLKEAVTD---STKAILTVNL---LGNPNN----FD 145 (390)
T ss_dssp CHHHHHHH-HHTTCEEEEECBCTTTCS-------------BCHHHHHHHCCT---TEEEEEEECG---GGCCCC----HH
T ss_pred cHHHHHHH-HHcCCEEEEEecCccccC-------------cCHHHHHHHhCc---CCeEEEEECC---ccChhh----HH
Confidence 88865543 334443322111100000 189999999864 5777777532 344455 99
Q ss_pred HHHHHHHHhCCEEEEecccc-CccccccchhhccCCCCchhhhhhhcC----CCCcEEEEEecH-HHHHhhc---CCC--
Q 011856 271 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMVA---PAG-- 339 (476)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pDi~t~sK~lg----~G~~iG~~~~~~-~i~~~l~---~~~-- 339 (476)
+|.++|++||++||+||+|+ |... ....+|..+|+.++||..+ +| +.|++++++ ++.+.+. ..+
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~----~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~ 220 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATF----NNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWT 220 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBS
T ss_pred HHHHHHHHcCCEEEEECcCcccCEE----CCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 4421 1234567778888775443 23 358888875 6655432 111
Q ss_pred -C------------------cc----ccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceE
Q 011856 340 -P------------------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (476)
Q Consensus 340 -~------------------~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (476)
. .+ .+.++..+++.++++++.|+.++ +..++.+++.+++.+.|+++. ++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~~---~~~~~ 295 (390)
T 3b8x_A 221 RNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDHP---YLDVQ 295 (390)
T ss_dssp TTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCS---SEEEC
T ss_pred ccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCC---CcccC
Confidence 0 00 11223377888888888887653 567777788888887776531 11100
Q ss_pred ee-eece--eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC------C-c-------------------
Q 011856 397 GG-YISG--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------F-E------------------- 447 (476)
Q Consensus 397 v~-~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~-~------------------- 447 (476)
.. .... .+.+.+.... .....++.+.|.++||.+++.. . +
T Consensus 296 ~~~~~~~~~~~~i~~~~~~-----------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (390)
T 3b8x_A 296 QETGESSWFGFSFIIKKDS-----------GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL 364 (390)
T ss_dssp CCCSBCCCCEEEEEECTTS-----------CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH
T ss_pred CCCCCcccEEEEEEecCcC-----------cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH
Confidence 00 1222 2444443110 0012568888999999887621 1 1
Q ss_pred ---ceEEe--CCCcHHHHHHHHHHH
Q 011856 448 ---AGFTS--LAHSSDDIQHTITAA 467 (476)
Q Consensus 448 ---~~~~~--~~~t~e~i~~~~~~l 467 (476)
.++++ ..+|++|++++++.|
T Consensus 365 ~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 365 DKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 13454 567999999999876
No 201
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.83 E-value=9.4e-19 Score=176.95 Aligned_cols=324 Identities=14% Similarity=0.073 Sum_probs=198.0
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHH
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar 176 (476)
+|+.+|.|... . -++++.+++.+++..+. .++.+...++.+.+++++ +.+++++++||++|++.+++.++
T Consensus 29 ~~~~~i~~~~~----~---~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-g~~~~i~~~sGt~a~~~al~~l~ 98 (437)
T 3bb8_A 29 AGKSVVPPSGK----V---IGTKELQLMVEASLDGW--LTTGRFNDAFEKKLGEYL-GVPYVLTTTSGSSANLLALTALT 98 (437)
T ss_dssp TTTSCBCSCCC----C---CCHHHHHHHHHHHHHCC--CBSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT
T ss_pred CCCccccCCCC----C---CCHHHHHHHHHHHHcCC--cCCChHHHHHHHHHHHHH-CCCcEEEeCCHHHHHHHHHHHhh
Confidence 35556665432 1 25899999999987642 345677788889998888 45589999999999999998642
Q ss_pred ------h-ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEE
Q 011856 177 ------A-FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (476)
Q Consensus 177 ------~-~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (476)
. ...+++|++..+.|++....+ ...|..+...+.....+ . -|+++|++.++. ++++
T Consensus 99 ~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~----------~---~d~~~l~~~i~~---~~~~ 161 (437)
T 3bb8_A 99 SPKLGVRALKPGDEVITVAAGFPTTVNPT-IQNGLIPVFVDVDIPTY----------N---VNASLIEAAVSD---KTKA 161 (437)
T ss_dssp CGGGGGGSCCTTCEEEECSSSCHHHHHHH-HHTTCEEEECCEETTTT----------E---ECGGGHHHHCCT---TEEE
T ss_pred hcccccccCCCcCEEEECCCCcHHHHHHH-HHcCCEEEEEeccCccC----------C---cCHHHHHHhcCC---CCeE
Confidence 1 344577888888888755443 33443322211100000 0 078889988863 5777
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchh--hhhhhcC-CCCcEEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGA 324 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~ 324 (476)
|++... .|...+ +++|.++|++||++||+||+|+ |. ..+ ..++..+|++ +|+|+.+ +|.++|+
T Consensus 162 v~~~~~---~g~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~g~gg~ 229 (437)
T 3bb8_A 162 IMIAHT---LGNLFD----LAEVRRVADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITMGEGGA 229 (437)
T ss_dssp EEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCCSSCEE
T ss_pred EEEeCC---CCChhc----HHHHHHHHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCCCCCeEE
Confidence 777432 233445 9999999999999999999996 44 321 2334446875 4544443 4567899
Q ss_pred EEecHHHHHh----hcCCCCc-------------------------c--------ccCCCCCcHHHHHHHHHHHHHhcCC
Q 011856 325 YGGRRDIMEM----VAPAGPM-------------------------Y--------QAGTLSGNPLAMTAGIHTLKRLKEP 367 (476)
Q Consensus 325 ~~~~~~i~~~----l~~~~~~-------------------------~--------~~~t~~~~~~~~aaa~aal~~~~~~ 367 (476)
++++++.+.. +...+.. + .+..+..+++.+++++++|+.+ +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~ 307 (437)
T 3bb8_A 230 VFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--E 307 (437)
T ss_dssp EEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--H
T ss_pred EEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--H
Confidence 9988654332 2111100 0 1112234688888888888765 4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCceEe--eeec-eeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC
Q 011856 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG--GYIS-GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (476)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 444 (476)
+..++.+++.+++++.|+++..-...+... ...+ ..+.+.+..+ ......++.+.|.++||.+++.
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~L~~~GI~v~~~ 376 (437)
T 3bb8_A 308 EFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKED-----------SGVSRIDLVKFLDEAKVGTRLL 376 (437)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGG-----------GSSCHHHHHHHHHHTTBCCBCC
T ss_pred HHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCc-----------CcCcHHHHHHHHHHCCCceecc
Confidence 556666777788887776641100011000 0011 1122223210 0011357888999999998765
Q ss_pred CCc----------------------------ceEEe--CCCcHHHHHHHHHHHHHHHH
Q 011856 445 QFE----------------------------AGFTS--LAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 445 ~~~----------------------------~~~~~--~~~t~e~i~~~~~~l~~~~~ 472 (476)
..+ .++++ ..+|++|+++++++|+++++
T Consensus 377 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 377 FAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp TTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred CCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 321 14554 45699999999999998764
No 202
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.83 E-value=3.9e-19 Score=178.63 Aligned_cols=313 Identities=13% Similarity=0.117 Sum_probs=190.5
Q ss_pred cHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCC
Q 011856 117 DDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (476)
Q Consensus 117 ~p~v~~a~~~~l~~~~~--~~---~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (476)
+|++.+++.++++++.. ++ +..++..++++.+++++ +.+.+++++||++|++.+++.++ ...++.|++..++|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~~~~i~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~ 92 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN-GVPYCVPTTSGSTALMLALEALG-IGEGDEVIVPSLTW 92 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCcc
Confidence 68999999999987421 21 12345788889998887 45578899999999999999531 34567888888888
Q ss_pred CCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q 011856 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (476)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (476)
++.... +...|..+...+.....+ .-|+++|++.+++ ++++|++++ ++|...+ +++
T Consensus 93 ~~~~~~-~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~~ 148 (418)
T 2c81_A 93 IATATA-VLNVNALPVFVDVEADTY-------------CIDPQLIKSAITD---KTKAIIPVH---LFGSMAN----MDE 148 (418)
T ss_dssp THHHHH-HHHTTCEEEEECBCTTTC-------------SBCHHHHGGGCCT---TEEEECCBC---CTTCCCC----HHH
T ss_pred HhHHHH-HHHcCCEEEEEecCCCCC-------------CcCHHHHHHhhCC---CCeEEEEeC---CcCCccc----HHH
Confidence 886543 334444332222110000 0178999888863 577777654 4576666 999
Q ss_pred HHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCch--hhh--hhhcCCCCcEEEEEec-HHHHHhhcC---CCC--
Q 011856 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL--TTL--GKIIGGGLPVGAYGGR-RDIMEMVAP---AGP-- 340 (476)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi--~t~--sK~lg~G~~iG~~~~~-~~i~~~l~~---~~~-- 340 (476)
|.++|++||++||+||+|+.+ .... ...+..+|+ .+| +|.+++| ++|+++++ +++++.+.. .+.
T Consensus 149 i~~~~~~~~~~li~D~a~~~~~~~~~----~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 149 INEIAQEHNLFVIEDCAQSHGSVWNN----QRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETT----EETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHCCCEEEEECcccccCccCC----EecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 999999999999999999765 2211 112222344 466 8999987 99999984 777666542 110
Q ss_pred ---------ccc--c---CCC----CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec-
Q 011856 341 ---------MYQ--A---GTL----SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS- 401 (476)
Q Consensus 341 ---------~~~--~---~t~----~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g- 401 (476)
.+. . ... ..+++.++.+...++.+ ++..++.+++.+++.+.|.++. ++.......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~ 298 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKID---GIKVMKRPPQV 298 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTST---TEEECCCCTTE
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCC---CcccCCCCCCC
Confidence 011 0 111 12344433333333222 3455666666666666665420 1111111122
Q ss_pred ---e--eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHC-CeE---eccCCC--------------------------
Q 011856 402 ---G--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY---FAPSQF-------------------------- 446 (476)
Q Consensus 402 ---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~---~~~~~~-------------------------- 446 (476)
. ++.+.+.+.... .....++.+.|.++ ||. +.++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (418)
T 2c81_A 299 SRQTYYGYVFRFDPVKFG---------GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAY 369 (418)
T ss_dssp EECCCSEEEEEECGGGTT---------TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHH
T ss_pred cccccEEEEEEEcccccc---------ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccc
Confidence 2 233444320000 01135788899998 999 765421
Q ss_pred --------------cceEEe--CCC-cHHHHHHHHHHHHHHHHHh
Q 011856 447 --------------EAGFTS--LAH-SSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 447 --------------~~~~~~--~~~-t~e~i~~~~~~l~~~~~~~ 474 (476)
..++++ ..+ |++|+++++++|+++++++
T Consensus 370 ~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 370 WRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 135665 456 9999999999999988753
No 203
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.82 E-value=2.8e-18 Score=177.05 Aligned_cols=310 Identities=14% Similarity=0.067 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhc-------cCC----ceEEEEeCCCCCCchhHHhhcCCCC
Q 011856 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------TGR----ERIIKFEGCYHGHADPFLVKAGSGV 206 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~-------~~~----~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (476)
+.+.++.++++++++ ..+.++|++|||+|+..+++.+|.. .+. +..|+.....|.....++...|.+.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCC
Confidence 556778888998885 3578999999999999999988642 121 2144455555666665555544421
Q ss_pred ccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q 011856 207 ATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (476)
. +++.+|.+ |+++|++.+++. +..+++|+++..++++|.+.| +++|.++|++
T Consensus 228 ~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~ 287 (515)
T 2jis_A 228 D----------------SVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQR 287 (515)
T ss_dssp G----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred C----------------cEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence 0 12222221 799999999741 224788888888788899988 9999999999
Q ss_pred hCCEEEEeccccCc-cccccchhhccCC-CCchhhh--hhhcCCCCcEEEEEecHH--HHHhhcC-CCCcc---------
Q 011856 279 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRRD--IMEMVAP-AGPMY--------- 342 (476)
Q Consensus 279 ~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t~--sK~lg~G~~iG~~~~~~~--i~~~l~~-~~~~~--------- 342 (476)
||++||+|++|+++ .....+.....++ .+|++++ +|.+++++++|+++++++ +++.... .....
T Consensus 288 ~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred cCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999877 4433222223344 5788764 899987778999988766 6554211 00111
Q ss_pred --ccCCC------CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCc
Q 011856 343 --QAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (476)
Q Consensus 343 --~~~t~------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (476)
..+++ ....+.+.++++++....-+++.++..++.+++.+.|+++. .+.+.. ......+.+.+......
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~--~~~~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKRE-GFELVM--EPEFVNVCFWFVPPSLR 444 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TEEESS--CCSSSEEEEEECCGGGT
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEeC--CCCeeEEEEEEeCcccc
Confidence 00111 11244444555554321114566777788888888877641 111111 11123333333211000
Q ss_pred Cchhhcccc-hH----HHHHHHHHHHHCCeEecc-----CCCcceEEeC---CCcHHHHHHHHHHHHHHHHH
Q 011856 415 NFEDAKKSE-TT----KFARFYRGMLEEGVYFAP-----SQFEAGFTSL---AHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 415 ~~~~~~~~~-~~----~~~~~~~~l~~~Gv~~~~-----~~~~~~~~~~---~~t~e~i~~~~~~l~~~~~~ 473 (476)
.... ..+ .. ....+.+.|.++|+.+.. .....+|+++ .+|++|+++++++|++++++
T Consensus 445 ~~~~--~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 445 GKQE--SPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp TCTT--STTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cccc--chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0000 000 00 122467788888975422 1123567765 37999999999999988765
No 204
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.82 E-value=1.9e-18 Score=177.81 Aligned_cols=316 Identities=13% Similarity=0.047 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHHHhc-------cC----CceEEEEeCCCCCCchhHHhhcCC
Q 011856 139 LLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RERIIKFEGCYHGHADPFLVKAGS 204 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~--~e~v~~~~sGseA~~~al~~ar~~-------~~----~~~ii~~~~~yhg~~~~~~~~~g~ 204 (476)
+++.++.++++++++ . .+.++|++|||+|+..+++.+|.. .+ ++.+|+.....|......+...|.
T Consensus 132 ~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~ 211 (504)
T 2okj_A 132 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC
Confidence 456777788888875 3 568999999999999999988642 22 132444455556655555544443
Q ss_pred CCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q 011856 205 GVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (476)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (476)
+.. +++.+|.+ |+++|++.+++. +..+++|++...++++|.+.+ +++|.++|
T Consensus 212 g~~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la 271 (504)
T 2okj_A 212 GTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADIC 271 (504)
T ss_dssp CGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHH
T ss_pred Ccc----------------cEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHH
Confidence 210 12222222 899999999741 224778888777777898888 99999999
Q ss_pred HHhCCEEEEeccccCc-cccccchhhccCC-CCchhhh--hhhcCCCCcEEEEEecH-HHHHhh-cCCCCcccc-CC---
Q 011856 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRR-DIMEMV-APAGPMYQA-GT--- 346 (476)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t~--sK~lg~G~~iG~~~~~~-~i~~~l-~~~~~~~~~-~t--- 346 (476)
++||++|++|++|.++ .....+.....++ .+|++++ +|.+++++++|++++++ ++++.. ......... +.
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD 351 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence 9999999999999876 3322111222233 5687765 59988778899998876 465542 211111111 11
Q ss_pred -------------CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCC
Q 011856 347 -------------LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 347 -------------~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
...+.+.+.++++++..-.-++..++..++.+++.+.|++. ..+.+.........++.+.+.....
T Consensus 352 ~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 352 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp GGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccc
Confidence 01245666666666542111455666777777777777653 1111111001234444444321110
Q ss_pred cCchh--h-cccchHHHHHHHHHHHHCCe-EeccC---CC-cceEEeCC---CcHHHHHHHHHHHHHHHHHhh
Q 011856 414 YNFED--A-KKSETTKFARFYRGMLEEGV-YFAPS---QF-EAGFTSLA---HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 414 ~~~~~--~-~~~~~~~~~~~~~~l~~~Gv-~~~~~---~~-~~~~~~~~---~t~e~i~~~~~~l~~~~~~~~ 475 (476)
..... . .........++.+.|.++|+ ++.+. +. ..+|+++. +|++||++++++|++++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~~ 503 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 503 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC--
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 00000 0 00000123567888899995 44322 11 35677654 799999999999999887653
No 205
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.81 E-value=1.5e-18 Score=176.33 Aligned_cols=296 Identities=13% Similarity=0.044 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHH-HHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCC
Q 011856 139 LLENVLAEMVISAVPSIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (476)
Q Consensus 139 ~~~~~la~~l~~~~~~~e~v~~~~sGs-eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 217 (476)
+.+.++.++++++++....++|++||+ .++..++..++...+++.||+.+. .|......+...|..+...+.....
T Consensus 133 ~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~-~h~s~~~~~~~~G~~~~~v~~~~~~-- 209 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPIKAVSFVGMNMRLVETVLDG-- 209 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHTTCEEEEECCEEET--
T ss_pred HHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHcCCCceEEEEeccC--
Confidence 355678889999886222399999999 567667776544334455666665 5555555555555543321110000
Q ss_pred CCCCCCceeeccCCCHHHHHHHH-hcC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Q 011856 218 PKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (476)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (476)
+... .|+++|++.+ +.. .+++.+|++...++++|.+.| +++|.++|++||+++++||+|.++..|
T Consensus 210 ------~~~~---~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~g 276 (456)
T 2z67_A 210 ------DRVY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNY 276 (456)
T ss_dssp ------TEEE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred ------CCCC---cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHHH
Confidence 0011 2899999999 420 125666666555567899988 999999999999999999999755221
Q ss_pred c-cchhhccCCCCchh--hhhhhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CC
Q 011856 296 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PG 368 (476)
Q Consensus 296 ~-~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 368 (476)
. ......+...+|++ +++|.+++++++|++++ ++++++.+.+ .+.+.. ++++ ..++.+++..+.. ++
T Consensus 277 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~-~~~~--~~~~~aal~~l~~~~~~~ 350 (456)
T 2z67_A 277 YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRA-SATP--VVNTLVSLLSMGSKNYLE 350 (456)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCB-CSHH--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCC-CCCH--HHHHHHHHHHHHHHHHHH
Confidence 1 11111111156766 46898887889999998 5778877753 222222 2232 2233333433322 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe---Eec---
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA--- 442 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~~~--- 442 (476)
..++..++.+++.+.|+++....+... .... .++.+.+..+ +. ..++.+.|.++|+ -+.
T Consensus 351 ~~~~~~~~~~~l~~~L~~~~~~~g~~v-~~~~-~~v~~~~~~~-----------~~--~~~l~~~L~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 351 LVKNQKNSKKLLDELLNDLSKKTGGKF-LDVE-SPIASCISVN-----------SD--PVEIAAKLYNLRVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCB-CCCC-CSSEEEEECS-----------SC--HHHHHHHHHHTTEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCEe-cCCC-CeEEEEEecc-----------cH--HHHHHHHHHHcCCCcceEEeec
Confidence 678888899999999988632122111 1112 4445554211 10 2467788888885 232
Q ss_pred ---------cCCCcceEEe--CCCcHHHHHHHHHHHHHHH
Q 011856 443 ---------PSQFEAGFTS--LAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 443 ---------~~~~~~~~~~--~~~t~e~i~~~~~~l~~~~ 471 (476)
......++++ ..+|++|+|+++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 1112345665 3479999999999998754
No 206
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.81 E-value=3.1e-20 Score=184.98 Aligned_cols=277 Identities=11% Similarity=0.015 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHHhhCC--CC-CeEEEeCCHHHHHHHHHHHHHhccCCc----eEEEEeCCCCCCchhHHhhcCCCCccCC
Q 011856 138 CLLENVLAEMVISAVP--SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 210 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~--~~-e~v~~~~sGseA~~~al~~ar~~~~~~----~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (476)
.++++++++++...-. .. ++|++++|+++++..+++.. ..+++ .|++.+++|.++. ..+...|..+.
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~~~--- 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYV-EETTYVRSGMY--- 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHH-HHHHTTCBTTE---
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHH-HHHHHcCCeEE---
Confidence 3455556665542211 24 69999999999999999853 23445 7888888887643 33333333221
Q ss_pred CCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CEEEEecc
Q 011856 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 288 (476)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv 288 (476)
.++. |.+.++ . +++++|++...+|++|.+.+ +|.+ ++|+ +++|+||+
T Consensus 145 ----------------~~~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 145 ----------------KWEG-DAWGFD----K--KGPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ----------------EEEE-ESTTCC----C--CSCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECT
T ss_pred ----------------EecC-CHHHcC----C--CCCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCC
Confidence 1111 112222 1 25666655555667787764 2333 2255 99999999
Q ss_pred ccCccccccchhhccCCCCchhhhhhhcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc-
Q 011856 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 365 (476)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 365 (476)
|.. ....... ...+....+.+|||.++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+...
T Consensus 194 y~~-~~~~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~ 268 (391)
T 3bwn_A 194 YYW-PHYTPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLKE 268 (391)
T ss_dssp TCS-TTTSCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcch
Confidence 962 1100111 11121122337999998 7999999987 8899888763 2222345778999999999887542
Q ss_pred ---------C--CCHHHHHHHHHHHHHHHHHHHhhhcCCc----e-------EeeeeceeEEEEEecCCCcCchhhcccc
Q 011856 366 ---------E--PGTYEYLNKITGELTQGIIDAGKKAGHA----I-------CGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (476)
Q Consensus 366 ---------~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~-------~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (476)
+ ++.+++++++.+++.+.|+++ ....+. . ..+..|.++++.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------ 335 (391)
T 3bwn_A 269 TCKSESESENFFKYGREMMKNRWEKLREVVKES-DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------ 335 (391)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC-SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccccccccccCCCcceEEEecCCcH------------
Confidence 1 334455555556666655543 101010 0 0123455677776421
Q ss_pred hHHHHHHHHHHHHCCeEeccCC-----CcceEEeCCCcHHHHHHHHHHHHHHHHH
Q 011856 424 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~~~~~~-----~~~~~~~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
..+.+.|.++||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 336 ----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 336 ----TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp ----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred ----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 234566778999998863 3468999888999999999999887653
No 207
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.81 E-value=1.7e-19 Score=182.61 Aligned_cols=288 Identities=11% Similarity=-0.022 Sum_probs=173.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~ 216 (476)
+.....++.+++++ ++..+.+++++|+++|+..+++.+ ..+++.|++..++|++. ...+...|..+...+......
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~-~~~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSV-LHALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHH-HHHHHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHH-HHHHHHcCCeEEEEeCeeccc
Confidence 44556677788888 753467899999999999999953 34556777777766654 444445555433221100000
Q ss_pred CCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccc
Q 011856 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (476)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (476)
. .....+ |+++| +. +++++|++++ .+++|.+.+ +++|.++|++||++||+||+|++. +.+
T Consensus 131 ~-----~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T-----NHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T-----SSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c-----CcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 000111 34444 22 2566777776 455888888 999999999999999999999753 322
Q ss_pred ccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHH--hhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCC--C-
Q 011856 296 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--G- 368 (476)
Q Consensus 296 ~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~--~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~- 368 (476)
.. ........+|++ +++|.++++.++|++++++++++ .+.. ......+.+.+...+++..++++.++.. +
T Consensus 192 ~~-~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~--~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~ 268 (446)
T 2x3l_A 192 GF-PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE--YLSYFQTSSPSYLIMASLESAAQFYKTYDSTL 268 (446)
T ss_dssp TS-CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHH--HHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHH
T ss_pred CC-CCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHH--HHHHHcCCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 21 111122236776 46698887677999999887654 2221 0112234455677776666677766542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcc
Q 011856 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (476)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 448 (476)
+.++.+++.+++++. ++.......+..+++.+.. ....++.+.|.++||.+...+...
T Consensus 269 ~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~~--------------~~~~~l~~~L~~~GI~v~~~g~~~ 326 (446)
T 2x3l_A 269 FFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYEG--------------FTGHDIQNWFMNAHIYLELADDYQ 326 (446)
T ss_dssp HHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECTT--------------SCHHHHHHHHHHTTEEESEECSSC
T ss_pred HHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeCC--------------cCHHHHHHHHHHCCCEEEecCCCE
Confidence 566666666666555 2211111123344554421 012567888999999998444456
Q ss_pred eEEeCC--CcHHHHHHHHHHHHHHHHH
Q 011856 449 GFTSLA--HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 449 ~~~~~~--~t~e~i~~~~~~l~~~~~~ 473 (476)
+|+++. +|++++ +++++|++++++
T Consensus 327 iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 327 ALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp EEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 777544 599999 999999988754
No 208
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.80 E-value=2e-18 Score=173.36 Aligned_cols=287 Identities=14% Similarity=0.065 Sum_probs=179.9
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
++++|.+++.++... ...+.|+.....++++++++.+ +.+...+ ++||++|+..+++. ....++.|++
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~-g~~~~~~~i~~~sGt~Ai~~al~a--l~~~Gd~Vl~ 112 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVF-GAEAGLVRPQIISGTHAISTALFG--ILRPGDELLY 112 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHT-TCSEECCBTTSCSHHHHHHHHHHT--TCCTTCEEEE
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHh-CCCcccccceeeCHHHHHHHHHHH--hCCCCCEEEE
Confidence 467888888775321 1234567788899999999998 4444443 56999999999983 2334567777
Q ss_pred EeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcc-cCCCCC
Q 011856 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP-VVGNSG 260 (476)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G 260 (476)
.++..|+.+...+..++.. .......+..+..++. .|+++|++.+++ ++++|++++ .++.+|
T Consensus 113 ~~~~~y~~~~~~~~l~g~~---------~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 113 ITGKPYDTLEEIVGVRGKG---------VGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CSSSCCTTHHHHTTSSSCS---------SSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred eCCCCchhHHHHHhhcccc---------cchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCC
Confidence 7645555555444332210 0111112223455554 289999999973 688999996 333444
Q ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchhhhhhhcCCC--CcEEEEEecHHHHHhh
Q 011856 261 FIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMV 335 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~t~sK~lg~G--~~iG~~~~~~~i~~~l 335 (476)
... +.+.+++|.++|++ ||++||+||+|.++ ...... .++.+..+.+++|.+++| .+.|++++++++++.+
T Consensus 181 ~~~-~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 181 PSF-TISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp CCC-CHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHH
T ss_pred CcC-CHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHH
Confidence 433 44459999999999 99999999999766 332221 224333334799999974 5779999999998887
Q ss_pred cCCC-CccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CCceEeeeeceeEEEEEecCCC
Q 011856 336 APAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPV 413 (476)
Q Consensus 336 ~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~ 413 (476)
.... ....+.+.+.++..+.+++..++.+ +...++..++..++.+.|+++..+. +. ...++.+.++.+.+.
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~---- 329 (431)
T 3ht4_A 257 AYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD---- 329 (431)
T ss_dssp HHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC----
T ss_pred HHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC----
Confidence 5310 1111222222222233344455433 4567788889999999998875422 11 122345557777773
Q ss_pred cCchhhcccchHHHHHHHHHHHHC
Q 011856 414 YNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
+.+...++++.|.+.
T Consensus 330 ---------~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 330 ---------DKDRMIAFCQAIQYA 344 (431)
T ss_dssp ---------CHHHHHHHHHHHHHT
T ss_pred ---------CHHHHHHHHHHHHhc
Confidence 234567888888876
No 209
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.80 E-value=3e-19 Score=175.52 Aligned_cols=307 Identities=9% Similarity=-0.017 Sum_probs=184.9
Q ss_pred CcHHHHHHHHHHHHhc----C-CCC----C--CCHHHHHHHHHHHhhCCC--CCeEEEeCCH-HHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKG----T-SFG----A--PCLLENVLAEMVISAVPS--IEMVRFVNSG-TEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~----~-~~~----~--~~~~~~~la~~l~~~~~~--~e~v~~~~sG-seA~~~al~~ar~~~~~ 181 (476)
.++.|++++.+.+++. . .++ + ..+...+++++++++++. .+++++++|+ ++|+..++.......++
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~ 93 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI 93 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence 6899999999887642 0 010 1 123467888899888752 3589999988 99999998742111122
Q ss_pred ceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHH-HHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~a~vi~ep~~~~~G 260 (476)
.++|+.....|.. .......| .+...+.....+ +.|+++|++ .++ +++++|+++++++++|
T Consensus 94 g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~-------------~~d~~~l~~~~i~---~~~k~v~~~~~~nptG 155 (360)
T 1w23_A 94 GNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANS-------------YQSIPDFSEFQLN---ENDAYLHITSNNTIYG 155 (360)
T ss_dssp EEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGT-------------SCSCCCGGGCCCC---TTEEEEEEESEETTTT
T ss_pred ccEEEecchhHHH-HHHHHHhC-CeEEeecccccC-------------cCCccchHhhccC---CCCCEEEEeCCCCCcc
Confidence 3344432222211 11122223 222111100000 125666766 553 3688888888888889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~ 337 (476)
.+.+ + + +++||++||+||+|..+ ..-. ...+ |++ +++|.++.. ++|++++++++++.+.+
T Consensus 156 ~~~~--~-i------~~~~~~~li~D~a~~~~~~~~~---~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 156 TQYQ--N-F------PEINHAPLIADMSSDILSRPLK---VNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp EECS--S-C------CCCCSSCEEEECTTTTTSSCCC---GGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred eecc--c-c------cccCCceEEEechhhcCCCCcC---cccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhccc
Confidence 8865 2 2 23899999999999754 2211 1111 555 578999831 38999999998877653
Q ss_pred CCCcc--------ccCC-CCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe--e-ee-
Q 011856 338 AGPMY--------QAGT-LSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG--G-YI- 400 (476)
Q Consensus 338 ~~~~~--------~~~t-~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~-~~- 400 (476)
..+.. ...+ .+.+..++.++.++++.+.+ ++..++++++.+++.+.|+++. ++.... + ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~ 295 (360)
T 1w23_A 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN---GFYVGHAEKGSRS 295 (360)
T ss_dssp TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT---TSSEESSCGGGBC
T ss_pred CCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc---CcccccCCchhcc
Confidence 21111 1112 23466667777778876543 3456666777777777776542 121111 2 12
Q ss_pred ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEeCC--CcHHHHHHHHHHHHHHHHH
Q 011856 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~~~--~t~e~i~~~~~~l~~~~~~ 473 (476)
+.++++.+. +.....++.+.|.++||.+.++. ...+|+++. ++++++++++++|++++++
T Consensus 296 ~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 296 LMNVTFNLR-------------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SSEEEEECS-------------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcC-------------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 447777652 11234567888999999998764 246788755 6999999999999998764
No 210
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.80 E-value=1e-17 Score=170.07 Aligned_cols=323 Identities=11% Similarity=-0.012 Sum_probs=192.5
Q ss_pred CcHHHHHHHHHHHHhcC-CCC-CC--CHHHHHHHHHHHhhCC-CCC-----eEEEeCCHHHHHHHHHHHHHhc-------
Q 011856 116 ADDQVLAALGETMKKGT-SFG-AP--CLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 178 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~-~~~-~~--~~~~~~la~~l~~~~~-~~e-----~v~~~~sGseA~~~al~~ar~~------- 178 (476)
.+|.+.+++.+.+.... .+. ++ .+++.++.++++++++ ..+ .+++++||+||+..+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999888776521 111 22 3557788888999886 333 4899999999999999876531
Q ss_pred cC----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 179 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 179 ~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
.+ ++.||+.+ .|..+...+...|..+..++.....+. -|+++|++.+++ ++++|++..
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLF-------------MDPKRMIEACDE---NTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCS-------------CCHHHHHHHCCT---TEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCe-------------ECHHHHHHHHhh---CCEEEEEEc
Confidence 22 34666655 676655555555654433222110010 189999999974 567777776
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--ccccchhhccCC-CCchhh--hhhhcCCCCcE
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGV-TPDLTT--LGKIIGGGLPV 322 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~i 322 (476)
.++++|.+.+ +++|.++|++| |+++++|++|.++ . ........ +.. ..|+++ ..|.+.+|+++
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~hK~~~~~~~~ 270 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISASGHKFGLAPLGC 270 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEECcccccCCCCCe
Confidence 6677899988 99999999996 9999999999875 2 11111010 111 246554 45966678999
Q ss_pred EEEEecHH-HH-HhhcCCCCcccc---------CCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 323 GAYGGRRD-IM-EMVAPAGPMYQA---------GTLSG-NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 323 G~~~~~~~-i~-~~l~~~~~~~~~---------~t~~~-~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|+++++++ ++ +.+... +.+.. ++... ..+++.+++..+..-.-++..++..++.+++.+.|+++.
T Consensus 271 G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-- 347 (452)
T 2dgk_A 271 GWVIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG-- 347 (452)
T ss_dssp EEEEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred EEEEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 99988643 33 443211 11111 11111 233334444333210014456666777777777776531
Q ss_pred cCCceEee----eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEecc----CC---CcceEEe--CCCcH
Q 011856 391 AGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFTS--LAHSS 457 (476)
Q Consensus 391 ~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~~---~~~~~~~--~~~t~ 457 (476)
++....+ ....++.+.+..... +.....++.+.|.++|+.+.. .. ...+|++ ..+|+
T Consensus 348 -~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 348 -PYEFICTGRPDEGIPAVCFKLKDGED---------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEM 417 (452)
T ss_dssp -SEEEEEECCTTTBSSEEEEEECTTCC---------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCH
T ss_pred -CeEEecCCCCCCCeEEEEEEecCccc---------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCH
Confidence 1211112 234566665532110 000125688899999996542 21 2246675 34589
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011856 458 DDIQHTITAAEKVKMRF 474 (476)
Q Consensus 458 e~i~~~~~~l~~~~~~~ 474 (476)
+|++++++.|+++++++
T Consensus 418 e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 418 DFAELLLEDYKASLKYL 434 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 211
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.79 E-value=3.9e-18 Score=171.15 Aligned_cols=281 Identities=16% Similarity=0.122 Sum_probs=178.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH---HhhcCCCCccCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (476)
++++...+|.+++++++ +.+.+++++||++|+..+++.. ...++.|++.++.|++..... +...|.
T Consensus 79 ~~~p~~~~le~~lA~l~-g~~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~-------- 147 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLT-GALGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPSFGI-------- 147 (430)
T ss_dssp -CCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHHTTC--------
T ss_pred CCCHHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHHcCC--------
Confidence 46788889999999988 5567888999999999999853 445678888888887754322 111121
Q ss_pred CCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011856 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (476)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (476)
.+..++.+|+++|++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+||+|+..
T Consensus 148 -----------~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~ 209 (430)
T 3ri6_A 148 -----------EVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP 209 (430)
T ss_dssp -----------EEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT
T ss_pred -----------EEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3566777799999999864 6899999999999999988 999999999999999999999521
Q ss_pred cccccchhhccCCCCchhhhhhhcCC-CCcEEEE-Ee--cHHH------------------HHhhcCCCCccccCCCCCc
Q 011856 293 RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAY-GG--RRDI------------------MEMVAPAGPMYQAGTLSGN 350 (476)
Q Consensus 293 r~g~~~~~~~~g~~pDi~t~sK~lg~-G~~iG~~-~~--~~~i------------------~~~l~~~~~~~~~~t~~~~ 350 (476)
.......+|.+..+.+++|.+++ |..+|++ +. +..+ ++.++. ..........+
T Consensus 210 ---~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~--~~~~~~g~~~~ 284 (430)
T 3ri6_A 210 ---YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARK--EVFQNLGPSLS 284 (430)
T ss_dssp ---TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHH--THHHHHCCCCC
T ss_pred ---ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHH--HHHHhcCCCCC
Confidence 11122234543334478999986 4444444 52 2111 222211 00011112346
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEee-----------------eece-eEEEEEecCC
Q 011856 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGP 412 (476)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-----------------~~g~-~~~i~~~~~~ 412 (476)
+..+..++..++.+. ...++..++..++.+.|++ ++.+..|. +.|. |++|++.+
T Consensus 285 ~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~----~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-- 356 (430)
T 3ri6_A 285 PHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLS----IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-- 356 (430)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT----CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred HHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhC----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--
Confidence 777766666666542 3445566666667666654 33333222 3466 99999852
Q ss_pred CcCchhhcccchHHHHHHHHHHHHCCeEeccCCCc---------------------------ceEEeCCCcHHHHHHHHH
Q 011856 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------AGFTSLAHSSDDIQHTIT 465 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------------------------~~~~~~~~t~e~i~~~~~ 465 (476)
.....+|.+.+...++.+..++.. .+|++.. -|+.+.+++
T Consensus 357 -----------~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--~E~~~dl~~ 423 (430)
T 3ri6_A 357 -----------KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--IEEIEDLKE 423 (430)
T ss_dssp -----------HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--SSCHHHHHH
T ss_pred -----------HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHH
Confidence 233456666665555544444322 2344433 466777788
Q ss_pred HHHHHH
Q 011856 466 AAEKVK 471 (476)
Q Consensus 466 ~l~~~~ 471 (476)
.|++++
T Consensus 424 dl~~al 429 (430)
T 3ri6_A 424 DILQAL 429 (430)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887765
No 212
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.79 E-value=6e-18 Score=166.54 Aligned_cols=304 Identities=12% Similarity=0.008 Sum_probs=186.5
Q ss_pred CcHHHHHHHHHHHHhcC---------CCCCC--CHHHHHHHHHHHhhCCC-CC-eE-EEeCCHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVPS-IE-MV-RFVNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~---------~~~~~--~~~~~~la~~l~~~~~~-~e-~v-~~~~sGseA~~~al~~ar~~~~~ 181 (476)
.+|+|++++.+.+.+.. ...++ .+...+++++++++++- .+ ++ ++++||++|+..+++.. ..++
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 68999999998875420 11111 23567889999998863 32 64 67799999999999842 3455
Q ss_pred ceEEEEeCCCCCCc-hhHHhhcCCCCccCCCCC--CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 182 ERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 182 ~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
++|++.+..+++.. ...+...| .+...+... ..+.. .|.++++ ++ +++++|++.++++.
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~------------~~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTL------------PKLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSC------------CCGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccC------------CCHHHcc--cC---CCcCEEEEeCCcCc
Confidence 67877776655532 12233334 433222110 01100 0333332 32 36788888777777
Q ss_pred CCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhhhcC-CCCcEEEEEecHHHHHh
Q 011856 259 SGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDIMEM 334 (476)
Q Consensus 259 ~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK~lg-~G~~iG~~~~~~~i~~~ 334 (476)
+|.+ .+ +++| ||+++|+||+|.-+.. ..... .. |++ +++|.+| .| +|++++++++++.
T Consensus 155 tG~~~~~----l~~i------~~~~vivD~a~~~~~~--~~~~~--~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~~~ 216 (362)
T 2c0r_A 155 EGAQFKA----FPDT------GSVPLIGDMSSDILSR--PFDLN--QF--GLVYAGAQKNLGPSG--VTVVIVREDLVAE 216 (362)
T ss_dssp TTEECSS----CCCC------TTSCEEEECTTTTTSS--CCCGG--GC--SEEEEETTTTTCCSS--CEEEEEEGGGSSS
T ss_pred cceeccc----cccc------CCCEEEEEChhhccCC--ccchh--HC--cEEEEeccccccCcC--cEEEEEcHHHHhh
Confidence 8885 54 4444 8999999999963211 01111 12 654 6899998 35 8999999998776
Q ss_pred hcCCCCccc---------cCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCC-ceEe---
Q 011856 335 VAPAGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGH-AICG--- 397 (476)
Q Consensus 335 l~~~~~~~~---------~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v--- 397 (476)
+.+..+.+. ...++.++.++.++.++|+.+.+ ++..++.+++.+++.+.|+++. ++ ....
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~ 293 (362)
T 2c0r_A 217 SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG---GFYRGCVDVD 293 (362)
T ss_dssp CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSSEESSCGG
T ss_pred ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC---CccccCCChH
Confidence 653211111 12346678888888899987643 3456666677777777776542 02 1100
Q ss_pred eeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEeCC--CcHHHHHHHHHHHHHHHHH
Q 011856 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~~~--~t~e~i~~~~~~l~~~~~~ 473 (476)
...+.++++.+. +.....++.+.|.++||.+.++. ...+|+++. ++++|++++++.|++++++
T Consensus 294 ~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 294 SRSDMNITFRLA-------------SEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp GBCSSEEEEECS-------------CHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcC-------------CcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 112344455442 12234678888999999887653 235788765 4899999999999998765
No 213
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.79 E-value=5e-18 Score=173.58 Aligned_cols=316 Identities=17% Similarity=0.122 Sum_probs=186.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-------C----CHHHHHHHHHHHhhCC-CCCe---EEEeCCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-------P----CLLENVLAEMVISAVP-SIEM---VRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-------~----~~~~~~la~~l~~~~~-~~e~---v~~~~sGseA~~~al~~ar~~~~ 180 (476)
.+|.|.+|+.+.+.+....++ . .+++.++.++++++++ ..+. .++.+||++|+..+++.. ..+
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~al--l~p 133 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL--VEP 133 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--TCT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHh--cCC
Confidence 589999999988876321111 1 2445566688888886 3332 245566779998888742 456
Q ss_pred CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeecc------CCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP------FNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
+++|++.+..|.++..........++. ..|. ....+.++ .-|+++|++.+++. ++++|++ .
T Consensus 134 GD~Vl~~~~~~~~~~~~~~~~~~~~v~------~~G~----~~~~v~~~~~~~~~~iD~d~le~~i~~~--~tklIi~-~ 200 (483)
T 1rv3_A 134 HGRIMGLDLPDGGHLTHGFMTDKKKIS------ATSI----FFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA-G 200 (483)
T ss_dssp TCEEEEECGGGTCCGGGCCBCSSCBCS------HHHH----HSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE-C
T ss_pred CCEEEEecCccCcCcchhhhhcccCcc------cccc----eEEEEECccccCCCcCCHHHHHHHHhhc--CCcEEEE-e
Confidence 678888877766643211000000000 0000 00111111 12899999999742 5677777 5
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHH
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRD 330 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~ 330 (476)
..+++ .+.+ +++|+++|++||++||+|++|. |+ ..+..- ..++ ..|++ +++|+|+ |+|.|+++++++
T Consensus 201 ~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p~~-~~div~~s~~K~l~-GprgG~i~~~~~ 271 (483)
T 1rv3_A 201 TSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SPFE-HCHVVTTTTHKTLR-GCRAGMIFYRRG 271 (483)
T ss_dssp CSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CGGG-TCSEEEEESSGGGC-CCSCEEEEEECS
T ss_pred CCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CCCC-CCcEEEecCcccCC-CCCceEEEEcch
Confidence 44445 6667 9999999999999999999984 55 322110 0011 24766 5679995 678899988874
Q ss_pred ---------------HHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 331 ---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 331 ---------------i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
+.+.+... .+.+...+.+...+++..++++.+.+ +++.+++.++.+++.+.|.+. +
T Consensus 272 ~~~~~~~~g~~~~y~~~~~~~~~--~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 345 (483)
T 1rv3_A 272 VRSVDPKTGKEILYNLESLINSA--VFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL----G 345 (483)
T ss_dssp BCC-------CCBCCHHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred hhhhccccCcchhhHHHHHhhhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 33333210 00111112344455555567776643 456777888888888888765 2
Q ss_pred CceEeeee-ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec----cCC-----CcceEEeCCC--c----
Q 011856 393 HAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ-----FEAGFTSLAH--S---- 456 (476)
Q Consensus 393 ~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~-----~~~~~~~~~~--t---- 456 (476)
+.....+. ..++++.+..... ...++.+.|.+.||.+. |+. ...+|+++.. |
T Consensus 346 ~~~~~~~~~~~~~~v~~~~~g~------------~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~ 413 (483)
T 1rv3_A 346 YKIVTGGSDNHLILVDLRSKGT------------DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 413 (483)
T ss_dssp CEEGGGSCSSSEEEEEGGGGTC------------CHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred CEeccCCCCCceEEEeccCCCC------------CHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCC
Confidence 21111111 2345555532100 12456677888999998 643 2357776542 5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011856 457 SDDIQHTITAAEKVKMR 473 (476)
Q Consensus 457 ~e~i~~~~~~l~~~~~~ 473 (476)
++|+++++++|++++..
T Consensus 414 ~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 414 EKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999998764
No 214
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.78 E-value=1.6e-17 Score=168.61 Aligned_cols=313 Identities=15% Similarity=0.055 Sum_probs=176.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHhhCCC-CC---eEEEeCCHHHHHHHHHHHHHhccC
Q 011856 116 ADDQVLAALGETMKKGTSFGA-----------PCLLENVLAEMVISAVPS-IE---MVRFVNSGTEACMGVLRLARAFTG 180 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~-----------~~~~~~~la~~l~~~~~~-~e---~v~~~~sGseA~~~al~~ar~~~~ 180 (476)
.+|+|.+|+.+.+.+....++ ..+++....++++++++. .+ ..++++||++||..++... ..+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al--~~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CCS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH--cCC
Confidence 489999999988765221121 134444555888888852 22 2456679999999999842 334
Q ss_pred CceEEEEeCCCCCCchh-------HHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011856 181 RERIIKFEGCYHGHADP-------FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (476)
Q Consensus 181 ~~~ii~~~~~yhg~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (476)
++.|++.+..|.|+... .+...|.......++.... . -..|+++|++.++++ ++++|+++
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~--------~---~~iD~d~le~~l~~~--~~klIi~~ 210 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK--------T---GLIDYNQLALTARLF--RPRLIIAG 210 (490)
T ss_dssp CEECCC-------------------------------CCBCTT--------T---CSBCHHHHHHHHHHH--CCSEEEEC
T ss_pred CCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc--------c---CCcCHHHHHHHHhhc--CCcEEEEc
Confidence 56666666555332110 1112222111111110000 0 022899999998743 34566664
Q ss_pred ccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecH
Q 011856 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRR 329 (476)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~ 329 (476)
...+ |...+ +++|+++|++||++|++|++| .|+ ..|... ..+. ..|++ |++|+|+ |.+.|++++++
T Consensus 211 ~s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~~-~aDiv~~S~hK~l~-Gp~GG~i~~~~ 280 (490)
T 2a7v_A 211 TSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFK-HADIVTTTTHKTLR-GARSGLIFYRK 280 (490)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGGG-TCSEEEEESSGGGC-SCSCEEEEEEC
T ss_pred CCCC--CCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCC--CCCC-CCCEEEECCcccCc-cccchheeecc
Confidence 3221 33455 999999999999999999998 455 333211 1111 24665 6889996 56789988876
Q ss_pred H---------------HHHhhcCCCCccccCCC-CCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 330 D---------------IMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 330 ~---------------i~~~l~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
+ +.+.++. ....++. +.++..+++..+++..+.. +++.+++.++.++|.+.|.+.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~i~~---~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~ 357 (490)
T 2a7v_A 281 GVKAVDPKTGREIPYTFEDRINF---AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS 357 (490)
T ss_dssp SEEEEETTTEEEEECCCHHHHHH---HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred chhcccccccchhhHHHHHHHHH---HhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 4 3344431 1111122 2344445554556655533 567788889999999999875221
Q ss_pred cCCceEeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccC----C-----CcceEEe------CC
Q 011856 391 AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFTS------LA 454 (476)
Q Consensus 391 ~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~-----~~~~~~~------~~ 454 (476)
+. ..+ ...++++.+..... ...++.+.|.+.||.+... . ...+|+. ..
T Consensus 358 --v~--~~~t~t~lv~vdl~~~g~------------~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 358 --LV--SGGTDNHLVLVDLRPKGL------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp --EG--GGSCSSSEEEEECTTTTC------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred --Ee--cCCCCCeEEEEEeCCCCC------------CHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 11 111 23456666532110 1245677888899998742 1 2346762 35
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~ 472 (476)
++++|++++++.|.+++.
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999998875
No 215
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.78 E-value=5.6e-18 Score=169.46 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.++...+++++++++. +.+.+++++||++|+..+++. ....+++||+.+..|++..........
T Consensus 79 ~~~p~~~~le~~lA~l~-g~~~~i~~ssGt~Ai~~al~~--l~~~Gd~Vi~~~~~y~~~~~~~~~~l~------------ 143 (415)
T 2fq6_A 79 RGTLTHFSLQQAMCELE-GGAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEPSQDFCSKILS------------ 143 (415)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHT--TCCTTCEEEEETTSCHHHHHHHHHTGG------------
T ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH------------
Confidence 35677888999998887 456788889999999999983 123567888888888774322211000
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCcc
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR 293 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~r 293 (476)
..+.++..++.+|+++|+++++. ++++|++|.++|++|.+.+ +++|.++|++ ||++||+|++|....
T Consensus 144 ----~~G~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~ 212 (415)
T 2fq6_A 144 ----KLGVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGV 212 (415)
T ss_dssp ----GGTCEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTT
T ss_pred ----HcCcEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 00113555666789999988863 6899999999999999998 9999999999 999999999995221
Q ss_pred ccccchhhccCCCCchh--hhhhhcCC-CC-cEEEEEecHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcCCCH
Q 011856 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-GL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (476)
Q Consensus 294 ~g~~~~~~~~g~~pDi~--t~sK~lg~-G~-~iG~~~~~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (476)
... .+....|++ +++|.+++ |. .+|++++++++++.+.... ...++ ..++..+..++..++.+ +..
T Consensus 213 ~~~-----p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~--~~~G~-~~~~~~a~~~~~~l~~l--~~r 282 (415)
T 2fq6_A 213 LFK-----ALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQ-MVDADTAYITSRGLRTL--GVR 282 (415)
T ss_dssp SSC-----GGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTC-CCCHHHHHHHHHHHHHH--HHH
T ss_pred cCC-----ccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH--HhcCC-CCCHHHHHHHHhhhhHH--HHH
Confidence 111 112235766 68999995 44 4799999988877765211 11222 34566666666666544 334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011856 370 YEYLNKITGELTQGIIDA 387 (476)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~ 387 (476)
.++..++...+.+.|++.
T Consensus 283 ~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 283 LRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 555666777777777654
No 216
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.77 E-value=3.7e-17 Score=161.75 Aligned_cols=314 Identities=12% Similarity=0.067 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCC
Q 011856 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~~~~~~~la~~l-~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (476)
.++++.+++.+.++.+. ++...+...+|.+.+ +++++..+++++++||++|+..+++.. ....++.||+....|.+.
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 46788999999998864 222256678899999 888842788999999999999999842 244567888888877764
Q ss_pred chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHH
Q 011856 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (476)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (476)
...+...|..+...+.....+ .-|++++++.+.....++++|+. + +..|...+ +++|.+
T Consensus 92 -~~~~~~~G~~~~~v~~~~~~~-------------~~d~~~l~~~i~~~~~~tk~v~~--~-~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 -PLAAIWCGLEPYFIDISIDDW-------------YMDKTVLWDKIEELKEEVAIVVP--Y-ATFGSWMN----LEEYEE 150 (377)
T ss_dssp -HHHHHHTTCEEEEECBCTTTC-------------SBCHHHHHHHHHHHGGGEEEECC--B-CGGGBCCC----CHHHHH
T ss_pred -HHHHHHcCCEEEEEecCCccC-------------CcCHHHHHHHHhcCCCCceEEEE--E-CCCCCccC----HHHHHH
Confidence 344444454333222110000 01899999988321112777763 3 23577777 889999
Q ss_pred HHHHhCCEEEEecccc-Cccccccchhhcc-CCCCchhhh----hhhcCCCCcEEEEEe-cHHHHHhhcC---CCC----
Q 011856 275 ITKENGALLIFDEVMT-GFRLAYGGAQEYF-GVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAP---AGP---- 340 (476)
Q Consensus 275 l~~~~g~llI~DEv~~-g~r~g~~~~~~~~-g~~pDi~t~----sK~lg~G~~iG~~~~-~~~i~~~l~~---~~~---- 340 (476)
+|+ ||++||+|++|+ |... ..... +...|+.++ +|.+++| ..|+++. ++++.+.++. .+.
T Consensus 151 la~-~~~~vi~D~a~a~g~~~----~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMN----GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEE----TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred HHh-cCCEEEEECCCccCCeE----CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 999 999999999995 2211 11122 112355544 3999875 5777765 5666665542 110
Q ss_pred --ccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-cCCceEe--eeeceeEEEEEecCCCcC
Q 011856 341 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICG--GYISGMFGFFFTEGPVYN 415 (476)
Q Consensus 341 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v--~~~g~~~~i~~~~~~~~~ 415 (476)
...+..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++..- ....... .....++.+.+.+
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 297 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE----- 297 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-----
T ss_pred ceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCC-----
Confidence 011224456788877777777644 456777888888888888775210 1111000 0111122333221
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEeccCCCc-------------------------ceEEe--CCCcHHHHHHHHHHHH
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTITAAE 468 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------------------------~~~~~--~~~t~e~i~~~~~~l~ 468 (476)
....+++.+.|.++||.++..... .++++ ...|++|++++++.|+
T Consensus 298 --------~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~ 369 (377)
T 3ju7_A 298 --------EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLG 369 (377)
T ss_dssp --------TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHH
Confidence 111367889999999987654311 12454 4669999999999998
Q ss_pred HHHHH
Q 011856 469 KVKMR 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+++..
T Consensus 370 ~~~~~ 374 (377)
T 3ju7_A 370 QKVVS 374 (377)
T ss_dssp C----
T ss_pred HHHhc
Confidence 87653
No 217
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.77 E-value=1.3e-18 Score=175.25 Aligned_cols=316 Identities=10% Similarity=-0.026 Sum_probs=189.5
Q ss_pred CCCEEEecccChhhccCCCCcHHHHHHHHHHHH-hcC-C--CC----C---CCHHHHHHHHHHHhhCC---CCCeEEEeC
Q 011856 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMK-KGT-S--FG----A---PCLLENVLAEMVISAVP---SIEMVRFVN 162 (476)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~-~~~-~--~~----~---~~~~~~~la~~l~~~~~---~~e~v~~~~ 162 (476)
..+..+||..+.. .++ .++.+.+++.+.+. .+. . |. + ..+++.++++++.+... .+++|++++
T Consensus 54 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 54 IQGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp CTTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 3456788877632 222 35677778877663 222 1 21 1 24556666666654331 468999999
Q ss_pred CHHHHHHHHHHHHHh------ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHH
Q 011856 163 SGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (476)
Q Consensus 163 sGseA~~~al~~ar~------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 236 (476)
|+++++..+++.... ...++.|++.++.|.++. ..+...|..+. .+. .|+++|
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~~~-------------------~~~-~d~~~l 189 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR-EQTKYFDKKGY-------------------VWA-GNAANY 189 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH-HHHHHSCBTTE-------------------EEE-EEGGGG
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH-HHHHHcCCeee-------------------eec-CCHHHH
Confidence 999999999984200 234567777777776533 33333333211 111 156777
Q ss_pred HHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchh--hhhh
Q 011856 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGK 314 (476)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~--t~sK 314 (476)
++.++. ++++|++...+|++|.+.+ +.+ + ++..|.||.+.+ ...... . +....+++ +|||
T Consensus 190 ~~~~~~---~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~-~~~s~~--~-~~~~~~i~~~S~SK 251 (427)
T 2hox_A 190 VNVSNP---EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW-PHYTPI--K-YKADEDILLFTMSK 251 (427)
T ss_dssp TTCSCG---GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS-TTTSCC--C-SCBCCSEEEEEHHH
T ss_pred HHhhcC---CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC-CCCCcc--c-cCCCceEEEEeChh
Confidence 766653 4566666555666777776 322 2 566777877642 100001 1 11112333 7999
Q ss_pred hcC-CCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhc---------CCCH----HHHHHHHHHH
Q 011856 315 IIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPGT----YEYLNKITGE 379 (476)
Q Consensus 315 ~lg-~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---------~~~~----~~~~~~~~~~ 379 (476)
.++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+... .+++ +++++++.++
T Consensus 252 ~~g~~G~RiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (427)
T 2hox_A 252 FTGHSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVN 328 (427)
T ss_dssp HTSCGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 998 7999999999 5899888763 2233456778889988888887531 1333 3445555555
Q ss_pred HHHHHHHH-hhhc-----C-----CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHH-HCCeEeccCC--
Q 011856 380 LTQGIIDA-GKKA-----G-----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-- 445 (476)
Q Consensus 380 l~~~L~~~-~~~~-----~-----~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-- 445 (476)
+.+.|++. .... + +....+..|.++++.+..+ ..++++.|+ ++||.+.++.
T Consensus 329 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gI~v~pg~~f 393 (427)
T 2hox_A 329 ITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---------------EDKDCYQTFQNGRINTQNGVGF 393 (427)
T ss_dssp HHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---------------GGCSHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc---------------HHHHHHHHHHHCCEEEcCCCcc
Confidence 55555442 1111 0 0111233477788877421 124556655 7899998863
Q ss_pred ---CcceEEeCCCcHHHHHHHHHHHHHHHH
Q 011856 446 ---FEAGFTSLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 446 ---~~~~~~~~~~t~e~i~~~~~~l~~~~~ 472 (476)
...+|+++..+++++++++++|+++++
T Consensus 394 ~~~~~~~Ris~~~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 394 EASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp TSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 346899988899999999999998875
No 218
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.76 E-value=1.4e-17 Score=165.87 Aligned_cols=281 Identities=15% Similarity=0.139 Sum_probs=174.6
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
|+.+|.+++.+.... ...++|+.....+|.+.+++++ +.+..++ ++||++|+..+++.. ...++.|++
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~al--l~~GD~Vl~ 106 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVF-KTEAALVRPQIISGTHAISTVLFGI--LRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTSCSHHHHHHHHHHHH--CCTTCEEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHh-CCCcEEEECCCccHHHHHHHHHHHh--cCCCCEEEE
Confidence 457788888775321 1235567777888999998888 5566666 899999999999842 345567777
Q ss_pred Ee-CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcc----cC
Q 011856 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VV 256 (476)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~ 256 (476)
.+ +.|.+. ...+...|... ......+..+..++. .|++++++.++. ++++|++++ ++
T Consensus 107 ~~~~~y~~~-~~~~~~~g~~~---------~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~ 173 (409)
T 3jzl_A 107 ITGQPYDTL-EEIVGIRKQGQ---------GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGYAD 173 (409)
T ss_dssp CSSSCCTTH-HHHHTSSSSSS---------SCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTTSS
T ss_pred eCCCCcHhH-HHHHhcccchh---------hHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCCCC
Confidence 76 555543 22221111000 000001112333333 389999999863 689999998 88
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCC--CcEEEEEecH
Q 011856 257 GNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRR 329 (476)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~~~ 329 (476)
+++|.+.+ +++|.++|++ ||+++|+||+|..+ .... ......|++ +++|.++++ ...|++++++
T Consensus 174 nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~-----p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~ 244 (409)
T 3jzl_A 174 RPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQE-----PPEVGADIIAGSLIKNPGGGLAKTGGYIAGKE 244 (409)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCC-----SGGGTCSEEEEETTSGGGTTTCSSCEEEEECH
T ss_pred CCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCC-----ccccCCeEEEECccccCCccCCceEEEEEeCH
Confidence 88888877 9999999999 99999999999643 1111 112234665 799999964 3468889999
Q ss_pred HHHHhhcC--CCCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEE
Q 011856 330 DIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGF 406 (476)
Q Consensus 330 ~i~~~l~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i 406 (476)
++++.+.. ..+.. ..+.+..+..+.+++..++.+ +..+++..++..++.+.|+++..+. .+. .-++...++.+
T Consensus 245 ~li~~l~~~~~~~~~-g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v-~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 245 ALVDLCGYRLTTPGI-GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEA-DPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCCEE
T ss_pred HHHHHHHHHhccccc-cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCCccEEEEE
Confidence 99988863 11111 112222221133344444433 4567788888889999888764321 010 00122236666
Q ss_pred EEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
.+. +.+...+|++.|.+..
T Consensus 321 ~l~-------------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 321 SFH-------------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp ECS-------------CHHHHHHHHHHHHHTS
T ss_pred EeC-------------CHHHHHHHHHHHHhcC
Confidence 663 3455678888888874
No 219
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.76 E-value=4e-16 Score=159.38 Aligned_cols=323 Identities=11% Similarity=0.002 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCCCC-----------CeEEEeCCHHHHHHHHHHHHHhcc----
Q 011856 119 QVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVPSI-----------EMVRFVNSGTEACMGVLRLARAFT---- 179 (476)
Q Consensus 119 ~v~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~~~-----------e~v~~~~sGseA~~~al~~ar~~~---- 179 (476)
.+.+.+...+.... .+.. ..+++.++.+++++.++-+ ...+|++|||+||..++..+|...
T Consensus 94 ~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~ 173 (481)
T 4e1o_A 94 LLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEM 173 (481)
T ss_dssp HHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHh
Confidence 44555555555422 2211 2367778888888876422 267999999999999999887531
Q ss_pred ------------CCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---C
Q 011856 180 ------------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---K 244 (476)
Q Consensus 180 ------------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~ 244 (476)
.++.+|+.....|.+...++...|..+..++...... -|+++|++.|++. +
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~Le~~i~~~~~~g 239 (481)
T 4e1o_A 174 KTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFS--------------LRGEALQKAIEEDKQRG 239 (481)
T ss_dssp HHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSC--------------CCHHHHHHHHHHHHHTT
T ss_pred hhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCc--------------CCHHHHHHHHHHHHhCC
Confidence 1344666666677666666655565443322211111 1899999999742 1
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGL 320 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~ 320 (476)
..+.+|++....+++|.+.| +++|.++|++||++|++|++|.+. .....+.....|+ ..|.++ ..|.+++..
T Consensus 240 ~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~ 315 (481)
T 4e1o_A 240 LVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF 315 (481)
T ss_dssp CEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred CCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC
Confidence 12555666666677888888 999999999999999999999764 3222111111233 246664 579998656
Q ss_pred cEEEEEecH-HHHH-hhcCCCCcccc----------------CCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRR-DIME-MVAPAGPMYQA----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (476)
Q Consensus 321 ~iG~~~~~~-~i~~-~l~~~~~~~~~----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (476)
..|+++.++ +.+. .+.. ...+.. .+.....+.+.+++..+..-.-++..++..++.+++.+
T Consensus 316 g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 394 (481)
T 4e1o_A 316 DCTGFWVKDKYKLQQTFSV-NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFES 394 (481)
T ss_dssp SCEEEEESBHHHHHTTTCC-CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcC-CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 678876654 4433 2221 111111 01112344445554444211115667777888888888
Q ss_pred HHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCe-EeccC---CCcceEEe---CCC
Q 011856 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV-YFAPS---QFEAGFTS---LAH 455 (476)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~---~~~~~~~~---~~~ 455 (476)
.|+++. .+.+. ......++.+.+.. ......++.+.|.++|+ ++.+. +...+|++ ...
T Consensus 395 ~L~~~~-g~~~~--~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~t 459 (481)
T 4e1o_A 395 LVRNDP-SFEIP--AKRHLGLVVFRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFT 459 (481)
T ss_dssp HHHTCT-TEECC--SCCCSSEEEEEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTC
T ss_pred HHhcCC-CeEEe--cCCceeEEEEEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCC
Confidence 887641 11111 12233445555421 12334678888988884 43432 22346775 334
Q ss_pred cHHHHHHHHHHHHHHHHHhh
Q 011856 456 SSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~~~ 475 (476)
|++||++++++|+++.++++
T Consensus 460 t~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 460 TRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988765
No 220
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.75 E-value=2.4e-16 Score=161.51 Aligned_cols=325 Identities=12% Similarity=0.000 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhcC-CCC-C--CCHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHHHhc--c--
Q 011856 118 DQVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAF--T-- 179 (476)
Q Consensus 118 p~v~~a~~~~l~~~~-~~~-~--~~~~~~~la~~l~~~~~~~----------e~v~~~~sGseA~~~al~~ar~~--~-- 179 (476)
..+.+++...+.... .+. . ..+++.+++++++++++-. ..++|++|||+|+..++..+|.. .
T Consensus 88 ~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~ 167 (486)
T 1js3_A 88 AMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL 167 (486)
T ss_dssp HHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhh
Confidence 346666766664422 111 1 2366677888888887521 35899999999999999877542 1
Q ss_pred ----CC-------ce-EEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCC---
Q 011856 180 ----GR-------ER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--- 244 (476)
Q Consensus 180 ----~~-------~~-ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--- 244 (476)
+. ++ +|+.....|.....++...|..+..++... .+. -|+++|++.+++..
T Consensus 168 ~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~-~~~-------------~d~~~L~~~i~~~~~~g 233 (486)
T 1js3_A 168 QAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG-KFA-------------MRASALQEALERDKAAG 233 (486)
T ss_dssp HHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT-TSC-------------CCHHHHHHHHHHHHHTT
T ss_pred hccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCC-CCC-------------CCHHHHHHHHHHHHhCC
Confidence 21 23 344444555555555555565544332211 110 18999999997421
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCC
Q 011856 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGL 320 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~ 320 (476)
....+|++...++++|.+.+ +++|.++|++||++|++|++|.++ .....+.....++ ..|.++ .+|.++..+
T Consensus 234 ~~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~ 309 (486)
T 1js3_A 234 LIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF 309 (486)
T ss_dssp CEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS
T ss_pred CCceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc
Confidence 11235555555567888888 999999999999999999999765 2221111101122 246554 679998768
Q ss_pred cEEEEEecHH-H-HHhhcCCCCcccc-----------------CCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRRD-I-MEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (476)
Q Consensus 321 ~iG~~~~~~~-i-~~~l~~~~~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (476)
++|+++.+++ . .+.+......... .+.....+.+.+++..+..-.-++..++..++.+++.
T Consensus 310 ~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~ 389 (486)
T 1js3_A 310 DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFE 389 (486)
T ss_dssp SCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8999988654 3 4544211111000 0111234444444444321111456677777888888
Q ss_pred HHHHHHhhhcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEec-cC---CCcceEEeCC---
Q 011856 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA-PS---QFEAGFTSLA--- 454 (476)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-~~---~~~~~~~~~~--- 454 (476)
+.|++.. ++.......+.++.+.+.. ......++.+.|.++|+++. +. +...+|+++.
T Consensus 390 ~~L~~~~---~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 390 AFVLQDP---RFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHHCT---TEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHhcCC---CeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 8887631 1111111234455554421 11223678888888886543 22 2235677643
Q ss_pred CcHHHHHHHHHHHHHHHHHhh
Q 011856 455 HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~~~~ 475 (476)
.|++|+++++++|+++++++.
T Consensus 455 ~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999887653
No 221
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.75 E-value=3.5e-16 Score=159.49 Aligned_cols=304 Identities=10% Similarity=0.014 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHHHhcc-------C---------CceEEEEeCCC
Q 011856 138 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 191 (476)
Q Consensus 138 ~~~~~~la~~l~~~~~~~----------e~v~~~~sGseA~~~al~~ar~~~-------~---------~~~ii~~~~~y 191 (476)
.+++.++.+++++.++-+ ...+|++|||+||..|+..+|... + ++.+|+.....
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 467778888888888522 268999999999999999886431 1 23456666667
Q ss_pred CCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcC---CCCeEEEEEcccCCCCCcccCCHHH
Q 011856 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
|.+...++...|..+..++.... + -|+++|++.|++. +..+.+|++....++.|.+.|
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~-~--------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---- 252 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENH-R--------------MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---- 252 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTT-B--------------CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHHcCCceEEEECCCC-C--------------cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----
Confidence 76666666666654433322111 1 1899999999752 112455666655666888888
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchhh--hhhhcCCCCcEEEEEecHH-HH-HhhcCCCCcc
Q 011856 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IM-EMVAPAGPMY 342 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~t--~sK~lg~G~~iG~~~~~~~-i~-~~l~~~~~~~ 342 (476)
+++|.++|++||+++++|++|.+. .....+.....++ ..|.++ ..|.+++...+|+++.+++ .+ +.+.....+.
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 332 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL 332 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence 999999999999999999999754 2221111111132 346664 5799987667888866543 32 2222110110
Q ss_pred cc---------C--CC-CC---cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeeceeEEEE
Q 011856 343 QA---------G--TL-SG---NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (476)
Q Consensus 343 ~~---------~--t~-~~---~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (476)
.. . +. .+ ..+.+.+++..+..-.-+++.++..++.+++.+.|+++. ++....+....++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~l~~~~~~~iv~f~ 409 (475)
T 3k40_A 333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADS---RFELAAEINMGLVCFR 409 (475)
T ss_dssp ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TEEESSCCBTTEEEEE
T ss_pred CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEecCCceEEEEEE
Confidence 00 0 00 11 133333444333211115677778888888888887741 1111112234455555
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHCCeEe-ccC---CCcceEEeCC---CcHHHHHHHHHHHHHHHHHhh
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTSLA---HSSDDIQHTITAAEKVKMRFL 475 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~-~~~---~~~~~~~~~~---~t~e~i~~~~~~l~~~~~~~~ 475 (476)
+.. +.....++.+.|.++|.++ .+. +...+|+++. .|++||++++++|+++.++++
T Consensus 410 ~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 410 LKG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp ESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 431 1233467888898888644 332 2335677643 589999999999999988764
No 222
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.74 E-value=5.4e-16 Score=159.21 Aligned_cols=321 Identities=12% Similarity=-0.008 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhcCC-C-CC--CCHHHHHHHHHHHhhCC-C--CC---eEEEeCCHHHHHHHHHHHHHhc-c-----
Q 011856 116 ADDQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF-T----- 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-~-~~--~~~~~~~la~~l~~~~~-~--~e---~v~~~~sGseA~~~al~~ar~~-~----- 179 (476)
.+|.+.+++.+.+..... + .+ ..+++.++.++++++++ . .+ ...+++||++|+..++..++.. .
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 588999999887765321 1 11 23566688888998885 2 22 3356999999999998865432 0
Q ss_pred -C----CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011856 180 -G----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (476)
Q Consensus 180 -~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (476)
| +..|++.+ ..|......+...|..+..++.....+. -|+++|++.+++ ++++|+++.
T Consensus 148 ~G~~~~~~~vi~~~-~~h~s~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 210 (502)
T 3hbx_A 148 EGKPVDKPNIVTGA-NVQVCWEKFARYFEVELKEVKLSEGYYV-------------MDPQQAVDMVDE---NTICVAAIL 210 (502)
T ss_dssp TTCCCSCCEEEEET-TCCHHHHHHHHHTTCEEEEECCBTTBCS-------------CCHHHHHHHCCT---TEEEEEEEB
T ss_pred cCCCCCCcEEEEcC-CchHHHHHHHHHcCceeEEEecCCCcCc-------------CCHHHHHHHHhh---CCEEEEEec
Confidence 2 12555544 4455455555555554333222111010 189999999874 567777666
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--ccccchhhccC-CCCchh--hhhhhcCCCCcE
Q 011856 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFG-VTPDLT--TLGKIIGGGLPV 322 (476)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g-~~pDi~--t~sK~lg~G~~i 322 (476)
.++++|.+.+ +++|.++|++| |++|++|++|.|+ . ....... .+. ...|++ +..|.+.++.++
T Consensus 211 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~-~~~~~~~D~v~~s~hK~l~~p~g~ 285 (502)
T 3hbx_A 211 GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-DFRLPLVKSINVSGHKYGLVYAGI 285 (502)
T ss_dssp SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-STTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc-ccCCCCceEEEECcccccCCCCCe
Confidence 6667789988 99999999999 9999999999765 2 1111110 011 123555 456877777889
Q ss_pred EEEEec-HHHH-HhhcCCCCccccC-------CCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011856 323 GAYGGR-RDIM-EMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (476)
Q Consensus 323 G~~~~~-~~i~-~~l~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (476)
|+++.+ ++.+ +.+... ..+..+ .++.+.....+..+++..+.. .+..++..++.+++.+.|+++
T Consensus 286 G~~~~~~~~~l~~~~~~~-~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--- 361 (502)
T 3hbx_A 286 GWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT--- 361 (502)
T ss_dssp EEEEESSGGGSCGGGCEE-ECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEeCHHHhhHHhccC-cccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 988665 4443 222110 011100 112222233333444443322 455667777777888777764
Q ss_pred cCCceEee--eeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC-------cceEEe--CCCcHHH
Q 011856 391 AGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDD 459 (476)
Q Consensus 391 ~~~~~~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------~~~~~~--~~~t~e~ 459 (476)
+....+. ....++.+.+..... ....++.+.|.++|+++..... ..+|++ ..+|+++
T Consensus 362 -~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ed 429 (502)
T 3hbx_A 362 -ERFNIVSKDEGVPLVAFSLKDSSC-----------HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTL 429 (502)
T ss_dssp -TCEEECSCSSSSSEEEEEESSCSS-----------CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHH
T ss_pred -CCEEEEeCCCCceEEEEEecCCCc-----------CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHH
Confidence 2111111 244566666643210 1124788899999998753321 245664 5679999
Q ss_pred HHHHHHHHHHHHHHh
Q 011856 460 IQHTITAAEKVKMRF 474 (476)
Q Consensus 460 i~~~~~~l~~~~~~~ 474 (476)
++.+++.|+++++++
T Consensus 430 id~li~~L~~~l~~l 444 (502)
T 3hbx_A 430 AERLVIDIEKVMREL 444 (502)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 223
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.74 E-value=1.3e-15 Score=156.71 Aligned_cols=336 Identities=13% Similarity=0.029 Sum_probs=192.5
Q ss_pred cHHH-HHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHHHhcc-------C-
Q 011856 117 DDQV-LAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G- 180 (476)
Q Consensus 117 ~p~v-~~a~~~~l~~~~-~~~~---~~~~~~~la~~l~~~~~-~--~e~v~~~~sGseA~~~al~~ar~~~-------~- 180 (476)
++.+ .+++.+.+.... .+.. ..+++.+++++++++++ . .+.++|++||++|+..++..++... +
T Consensus 108 ~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~ 187 (511)
T 3vp6_A 108 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 187 (511)
T ss_dssp HHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 4444 455665655422 1211 13566778888888875 2 4689999999999999999876521 1
Q ss_pred ---CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC-----CHHHHHHHHhcC---CCCeEE
Q 011856 181 ---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAA 249 (476)
Q Consensus 181 ---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~ 249 (476)
++.+|+.....|.....++...|.+.. .+..+|.+ |+++|++.|++. +..+++
T Consensus 188 ~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~----------------~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~ 251 (511)
T 3vp6_A 188 AAVPKLVLFTSEQSHYSIKKAGAALGFGTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 251 (511)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCeEEEECCCchHHHHHHHHHcCCCCC----------------cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEE
Confidence 344566666677666666666554221 11122211 899999999742 123778
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCchh--hhhhhcCCCCcEEEE
Q 011856 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAY 325 (476)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pDi~--t~sK~lg~G~~iG~~ 325 (476)
|+++..++++|.+.+ +++|.++|++||++|++|++|.+. .....+.....|+ ..|++ +.+|.+++.+..|++
T Consensus 252 vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l 327 (511)
T 3vp6_A 252 VNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 327 (511)
T ss_dssp EEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred EEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEE
Confidence 888888888999988 999999999999999999999754 3221111111122 34665 467999866668888
Q ss_pred EecH-HHHHhhcCCCCccccC------------------CCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011856 326 GGRR-DIMEMVAPAGPMYQAG------------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386 (476)
Q Consensus 326 ~~~~-~i~~~l~~~~~~~~~~------------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (476)
+.++ ++++......+.+... +.....+.+.+++..+..-.-+++.++..++.+++++.|++
T Consensus 328 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~ 407 (511)
T 3vp6_A 328 LVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 407 (511)
T ss_dssp EESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6654 4554432111111100 00123444444444432111156777888888888888875
Q ss_pred HhhhcCCceEeeeeceeEEEEEecCCCcCchh---hcccchHHHHHHHHHHHHCCeEeccC---C--CcceEEe---CCC
Q 011856 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFED---AKKSETTKFARFYRGMLEEGVYFAPS---Q--FEAGFTS---LAH 455 (476)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~Gv~~~~~---~--~~~~~~~---~~~ 455 (476)
. ..+.+.........++.+.+.......... ..........++.+.|+++|+++... . ...+|++ ..+
T Consensus 408 ~-pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~ 486 (511)
T 3vp6_A 408 R-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAA 486 (511)
T ss_dssp C-TTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTC
T ss_pred C-CCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCC
Confidence 3 111111100123444455443211100000 00000112346888899999654321 1 1246664 456
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 011856 456 SSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 456 t~e~i~~~~~~l~~~~~~ 473 (476)
+++||+.+++.|++.-+.
T Consensus 487 t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 487 TQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999987654
No 224
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.74 E-value=6.2e-17 Score=161.46 Aligned_cols=302 Identities=9% Similarity=-0.051 Sum_probs=181.5
Q ss_pred CcHHHHHHHHHHHHh--cCCCCCC--CHHHHHHHHHHHhhCC-C-CCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEe
Q 011856 116 ADDQVLAALGETMKK--GTSFGAP--CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 188 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~--~~~~~~~--~~~~~~la~~l~~~~~-~-~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (476)
.+|+|.+++.+.... +....++ .+...++.++++++++ . .++++| ++||++|++.+++. +.+++ ++...
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~---l~~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFG---LIDKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHH---TCSSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHH---hcCCC-eEEEe
Confidence 578999988763111 1011122 2346789999999986 3 358998 99999999999994 33444 33335
Q ss_pred CCCCCCchh-HHhhc--CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCC
Q 011856 189 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (476)
Q Consensus 189 ~~yhg~~~~-~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (476)
..+|+.... ..... |..+...+.+ .+.. .+. .+. +++++|++..+++++|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~------------~~~-----~i~---~~~~~v~~~~~~nptG~~~~- 183 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSA------------PEP-----QTD---PSVDVIAWAHNETSTGVAVA- 183 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCC------------CCC-----CCC---TTCSEEEEESEETTTTEECC-
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCC------------CCc-----ccc---CCCCEEEEeCcCCCcceecc-
Confidence 555543211 11222 2222211111 1110 011 022 35677877777788999988
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCCCcEEEEEecHHHHHhhcCC----
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA---- 338 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G~~iG~~~~~~~i~~~l~~~---- 338 (476)
+++|.++ +|++||+||+|+.+ ..- ... .+|++ +++|.++++.++|++++++++++.+...
T Consensus 184 ---~~~i~~~---~~~~vivD~a~~~~~~~~---~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 184 ---VRRPEGS---DDALVVIDATSGAGGLPV---DIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp ---CCCCTTC---C-CEEEEECTTTTTTSCC---CGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTT
T ss_pred ---hHHhhhh---cCCeEEEEeccccCCccc---Ccc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccC
Confidence 4445555 89999999999754 221 111 25666 5779998543599999999988776310
Q ss_pred ---CCcc-----------ccCCCCCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCceEe--e
Q 011856 339 ---GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG--G 398 (476)
Q Consensus 339 ---~~~~-----------~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~ 398 (476)
.+.. .....+.+..+++++.++|+.+.+ ++..++.+++.+++.+.|+++. ++.... +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~ 327 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP---YTTPFVTDP 327 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST---TEEESCCSG
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC---CceeccCCh
Confidence 0000 011234566677777788876543 3456667777777777776641 211111 1
Q ss_pred -eece-eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC----CcceEEeCC--CcHHHHHHHHHHHHHH
Q 011856 399 -YISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKV 470 (476)
Q Consensus 399 -~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~~~--~t~e~i~~~~~~l~~~ 470 (476)
+.+. ++++.+... ....++.+.|.++||.+.++. ...+|+++. +|++|+++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 328 GLRSQVVGTIDFVDD-------------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp GGBCSSEEEEEECTT-------------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCC-------------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1234 777776321 012578889999999998642 245788765 6999999999999998
Q ss_pred HHH
Q 011856 471 KMR 473 (476)
Q Consensus 471 ~~~ 473 (476)
+++
T Consensus 395 l~~ 397 (398)
T 2fyf_A 395 VER 397 (398)
T ss_dssp HHT
T ss_pred HHh
Confidence 865
No 225
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.72 E-value=1.4e-16 Score=159.22 Aligned_cols=283 Identities=16% Similarity=0.119 Sum_probs=174.4
Q ss_pred CcHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEE
Q 011856 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~------~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (476)
++++|.+|+.+.... ...++|+.....+|.+.+++++ +.+..++ ++||++|+..++.. ...+++.|++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~-g~e~alv~p~~~sGt~A~~~al~a--ll~pGD~Vl~ 121 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIF-NTESAFVRPHFVNGTHAIGAALFG--NLRPNDTMMS 121 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--TCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHh-CCCceEEeCCCCcHHHHHHHHHHH--hcCCCCEEEE
Confidence 458888888775322 1235566667788889998888 5666677 89999999999884 2445677777
Q ss_pred Ee-CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC----CCHHHHHHHHhcCCCCeEEEEEcc----cCC
Q 011856 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVG 257 (476)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (476)
.+ +.|++.. ... .+... + ........+..+..++. .|+++|+++++++ +++++|++++ +++
T Consensus 122 ~~~~~y~~~~-~~~--g~~~~-----~-~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 122 ICGMPYDTLH-DII--GMDDS-----K-KVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CSSSCCGGGH-HHH--TCCTT-----C-CSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred eCCCCchhHH-HHh--ccccc-----h-hhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 77 6666532 111 00000 0 00000111223444444 4899999999842 2689999999 777
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCCC--CcEEEEEecHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRRD 330 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~G--~~iG~~~~~~~ 330 (476)
++|.+.+ +++|+++|++ ||++||+||+|..+ ..... .....|++ |++|.++++ .+.|+++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p-----~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEP-----TDVGADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG-----GGGTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCC-----cccCCeEEEECCcccccccccceEEEEEECHH
Confidence 7888766 9999999999 89999999999643 12111 11224665 799999964 45788899999
Q ss_pred HHHhhcCC--CCccccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCce-EeeeeceeEEEE
Q 011856 331 IMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFF 407 (476)
Q Consensus 331 i~~~l~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~ 407 (476)
+++.++.. .+.. +.+.+.++..+..++..++.+ +...++..++..++.+.|++...+. .+. .-++...++.+.
T Consensus 263 li~~l~~~~~~~~~-g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V-~p~~~~~~~~li~~~~ 338 (427)
T 3hvy_A 263 YVTQATFRVTVPGI-GGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAGFDV-LPKYNDKRTDIIQAIK 338 (427)
T ss_dssp HHHHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSEEEEE
T ss_pred HHHHHHHHhhcCCc-ccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCee-cCCCCCCCceEEEEEe
Confidence 99888631 1111 111122122133344444332 4577788888888988888764211 010 001122266666
Q ss_pred EecCCCcCchhhcccchHHHHHHHHHHHHC
Q 011856 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (476)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (476)
+. +.+...+|++.|...
T Consensus 339 l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 339 FN-------------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp CS-------------SHHHHHHHHHHHHHT
T ss_pred CC-------------CHHHHHHHHHHhccc
Confidence 63 334567788888775
No 226
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.72 E-value=3.7e-16 Score=156.09 Aligned_cols=278 Identities=16% Similarity=0.130 Sum_probs=172.3
Q ss_pred cHHHHHHHHHHHH--h----cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 117 DDQVLAALGETMK--K----GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 117 ~p~v~~a~~~~l~--~----~~~~~~~~~~~~~la~~l~~~~~~~e~v~~---~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
.++|.+|+.+... . ...++|+.....+|.+.+++++ +.+..++ ++||++|+..++.. ...+++.|++.
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~a--ll~pGD~Vl~~ 121 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVF-NTESALVRPHFVNGTHALGAALFG--NLRPGNTMLSV 121 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--HCCTTCEEEES
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeCCCccHHHHHHHHHHH--HhCCCCEEEEe
Confidence 4678888776421 1 1235566777788889999888 5565566 89999999999884 23456677777
Q ss_pred e-CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccC-----CCHHHHHHHHhcCCCCeEEEEEcc----cCC
Q 011856 188 E-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVG 257 (476)
Q Consensus 188 ~-~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (476)
+ +.|++.. ..+...+... .......+..+..++. .|+++|++.++++ +++++|++++ +++
T Consensus 122 ~~~~y~~~~-~~~g~~~~~~--------~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~n 191 (427)
T 3i16_A 122 CGEPYDTLH-DVIGITENSN--------MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWR 191 (427)
T ss_dssp SSSCCGGGH-HHHTCSCCCS--------SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSS
T ss_pred CCCccHHHH-HHHhccccch--------HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCC
Confidence 6 5665532 1110000000 0000111122334443 3899999999842 3689999998 777
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-cccccchhhccCCCCchh--hhhhhcCC-C-CcEEEEEecHH
Q 011856 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRD 330 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pDi~--t~sK~lg~-G-~~iG~~~~~~~ 330 (476)
++|.+.+ +++|.++|++ ||+++|+||+|..+ ...... .++ .|++ +++|.+++ | .+.|+++++++
T Consensus 192 ptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 192 RALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred CcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECHH
Confidence 7888876 9999999999 99999999999644 121111 123 4655 79999996 4 46799999999
Q ss_pred HHHhhcC--CCCccccCCCCCcHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeeec-----e
Q 011856 331 IMEMVAP--AGPMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-----G 402 (476)
Q Consensus 331 i~~~l~~--~~~~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g-----~ 402 (476)
+++.++. ..+. .+...+ ..+. +..++..++.+ +...++..++..++.+.|+++..+ . .++.. .
T Consensus 263 li~~l~~~~~~~~-~g~~~~-~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~----V-~p~~~~~~~~~ 333 (427)
T 3i16_A 263 CIEKTSYRLTVPG-IGGECG-STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFE----V-MPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHSCTT-TGGGCC-CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE----E-ESCTTSCCSSS
T ss_pred HHHHHHHhcccCc-cCccCC-ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCe----e-cCCCCCCCccE
Confidence 9988863 1111 111111 1122 33333333322 566778888888888888876421 1 12222 2
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCC
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (476)
++.+.+. +.+...+|++.|....
T Consensus 334 i~~i~l~-------------~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 334 IQSIKFN-------------DKDKLIEFCKGIQTGS 356 (427)
T ss_dssp CEEEECS-------------SHHHHHHHHHHHHHTC
T ss_pred EEEEEEC-------------CHHHHHHHHHHHhhcC
Confidence 6667663 3355678888888763
No 227
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.64 E-value=5.8e-15 Score=156.44 Aligned_cols=310 Identities=11% Similarity=0.003 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCe-EEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhH-HhhcCCCCccCCCC-C
Q 011856 137 PCLLENVLAEMVISAVPSIEM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF-LVKAGSGVATLGLP-D 213 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~-v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~-~ 213 (476)
+.....++.+.++++++ .+. +++++|+++|+..++... ...++.|++..++|+. .... +...|..+...... .
T Consensus 171 ~~~~i~e~e~~lA~~~g-ae~~i~v~nGtt~an~~ai~al--~~pGD~VLv~~~~H~S-~~~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYN-ADKTYFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKS-VYNSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp TBTHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHH-HHHHHTTTTCCEEEEECEEEC
T ss_pred ChHHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHHh--cCCCCEEEEcCCchHH-HHHHHHHHCCCEEEEEeCCcc
Confidence 34566788888998884 454 455555569999999842 2344556555555433 3333 44444432211110 0
Q ss_pred CCCCCCCCCCceeeccCCCHHHH-----HHHHhcCCCC---e----EE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhC
Q 011856 214 SPGVPKGATYETLTAPFNDVSAL-----ENLFENNKGE---I----AA-IILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~~~~---~----a~-vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (476)
..++ ...+ |+++| ++.++++.++ + ++ ++++|+ .+|.+.+ +++|.++|++||
T Consensus 247 ~~~i-------~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g 310 (730)
T 1c4k_A 247 PYGF-------IGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLC 310 (730)
T ss_dssp TTCC-------EEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGB
T ss_pred ccCc-------cCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcC
Confidence 0000 0011 55555 8888753101 2 44 455553 4788888 999999999999
Q ss_pred CEEEEeccccCc-cccccc----hh--hccCCC-Cc-hh--hhhhhcCCCCcE-EEEEecHHHH---------HhhcCCC
Q 011856 281 ALLIFDEVMTGF-RLAYGG----AQ--EYFGVT-PD-LT--TLGKIIGGGLPV-GAYGGRRDIM---------EMVAPAG 339 (476)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~----~~--~~~g~~-pD-i~--t~sK~lg~G~~i-G~~~~~~~i~---------~~l~~~~ 339 (476)
++||+||+|.+. ..+..+ .. +.++.. |+ ++ +++|+++ |++. |+++.+++.+ ..+..
T Consensus 311 ~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~-- 387 (730)
T 1c4k_A 311 DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN-- 387 (730)
T ss_dssp SEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH--
T ss_pred CeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH--
Confidence 999999999632 222111 11 122332 22 43 6899986 4444 5554443321 11110
Q ss_pred CccccCCCCCcHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-H-hhhcCCceEe-----------------
Q 011856 340 PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-A-GKKAGHAICG----------------- 397 (476)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~v----------------- 397 (476)
......+.+.+++.+++..++++.+.. .++.+++.++.+++++.|++ + +.+.-.+..+
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~ 467 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNI 467 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCG
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccc
Confidence 011122345677777777777776653 55778888889999999877 2 1111000000
Q ss_pred --------------ee--ece-eE-E--EEEecCCC----cCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--
Q 011856 398 --------------GY--ISG-MF-G--FFFTEGPV----YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT-- 451 (476)
Q Consensus 398 --------------~~--~g~-~~-~--i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~-- 451 (476)
.+ .+. ++ . +.+..+.. ..+.. .......+.+.|.++||++...+...+++
T Consensus 468 ~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~----~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~ 543 (730)
T 1c4k_A 468 DYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYED----FGVPATIVANYLRDHGIIPEKSDLNSILFLM 543 (730)
T ss_dssp GGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECS----SCCCHHHHHHHHHHTTCCCSEECSSEEEEEC
T ss_pred hhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccc----cCCCHHHHHHHHHHCCcEEEECCCCeEEEEe
Confidence 00 110 10 0 11211100 00000 01123567888999999998776555655
Q ss_pred eCCCcHHHHHHHHHHHHHHHHH
Q 011856 452 SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 452 ~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+..+|++++++++++|+++.+.
T Consensus 544 s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 544 TPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 5778999999999999988754
No 228
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.62 E-value=4.9e-15 Score=155.75 Aligned_cols=307 Identities=9% Similarity=-0.021 Sum_probs=183.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCH-HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCC
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sG-seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (476)
+.....++.+.+++.+ +.++.+|+.+| +.||.+++. +..++++.|+.+...|.+....+...|..+....... .
T Consensus 193 ~~g~i~eaE~~lA~~f-Ga~~a~~v~nGts~An~~ai~---al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~ 267 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF-NADRSYMVTNGTSTANKIVGM---YSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-N 267 (715)
T ss_dssp TBTHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH---HHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-C
T ss_pred CcHHHHHHHHHHHHHh-CCCCceEECcHHHHHHHHHHH---HhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-c
Confidence 3444567777788777 66777776666 699988888 4555555555666666666667777776543322110 0
Q ss_pred CCCCCCCCceeeccCC------CHHHHHHHHhcCCCCe---EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 216 GVPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~---a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
. +.++++ |+++|+++++++++.. ++|+++| +..|.+.+ +++|.++|++++ ||+|
T Consensus 268 ~---------~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 268 A---------YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp T---------TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred c---------cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 0 111111 7999999998754322 4666677 66899998 999999998764 7999
Q ss_pred cccc-Cccccccch-hh--ccCCCCchh-----hhhhhcCCCC-cEEEEEecHHH-HHhhcCCCCccccCCCCCcHHHHH
Q 011856 287 EVMT-GFRLAYGGA-QE--YFGVTPDLT-----TLGKIIGGGL-PVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMT 355 (476)
Q Consensus 287 Ev~~-g~r~g~~~~-~~--~~g~~pDi~-----t~sK~lg~G~-~iG~~~~~~~i-~~~l~~~~~~~~~~t~~~~~~~~a 355 (476)
|+|. ++..+..+. .. ..+..+|++ +++|++++ + ..|++.+++++ .+.+.. ......|.+.+++.++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVA 407 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHH
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHH
Confidence 9995 333232211 11 112235643 68999874 3 36777766542 112221 1112334578899999
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCceEee------eece------------------eEEEE
Q 011856 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGG------YISG------------------MFGFF 407 (476)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~------~~g~------------------~~~i~ 407 (476)
+..++++.++. +++++++.++.++++++|+++.... ++...+. +... ...++
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~D 487 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEEC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCC
Confidence 99999988762 5788999999999999999875321 1000000 0000 00010
Q ss_pred -----EecCCCc---CchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE--eCCCcHHHHHHHHHHHHHHHH
Q 011856 408 -----FTEGPVY---NFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 408 -----~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~--~~~~t~e~i~~~~~~l~~~~~ 472 (476)
+...... .+... ......+.+.|.++||.+.-.....+.+ +...|++++++++++|.++-+
T Consensus 488 p~Kl~i~~~~~~~~G~~~~~----Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 488 PIKVTLLTPGMEKDGTMSDF----GIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp TTEEEEECSCBCTTSCBCSS----CCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCccccC----CCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 0000000 00000 1112456777888999887665444433 677899999999999987643
No 229
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.62 E-value=1.1e-14 Score=155.53 Aligned_cols=316 Identities=9% Similarity=-0.015 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC-C
Q 011856 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-P 215 (476)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~ 215 (476)
+.....++.+.+++.++..+.++++||+++|+..++... ...++.|++..++|+. ....+...|..+...+.... .
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al--~~~GD~Vlv~~~~h~s-~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKS-IEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHH-HHHHHHHHCCEEEEECCCBCTT
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh--cCCCCEEEECCCchHH-HHHHHHHcCCEEEEEeCCCCcc
Confidence 445566777777777743334566666678999999842 2345566666555444 44445555654432221100 0
Q ss_pred CCCCCCCCceeeccCCCHHHHHHHHhcCCCCe--------EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011856 216 GVPKGATYETLTAPFNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (476)
+.. ..+....-|+++|++.++++++.. .+++++| +.+|.+.+ +++|.++|++||++||+||
T Consensus 280 g~~-----g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDe 348 (755)
T 2vyc_A 280 GII-----GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDE 348 (755)
T ss_dssp SCB-----CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEEC
T ss_pred ccc-----cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEEC
Confidence 100 000000017999999997643221 4555665 35788888 9999999999999999999
Q ss_pred cccCc-cccccc--hhhccCCCCch------h--hhhhhcCCCCc-EEEEEecHH--HH--HhhcCCCCccccCCCCCcH
Q 011856 288 VMTGF-RLAYGG--AQEYFGVTPDL------T--TLGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGNP 351 (476)
Q Consensus 288 v~~g~-r~g~~~--~~~~~g~~pDi------~--t~sK~lg~G~~-iG~~~~~~~--i~--~~l~~~~~~~~~~t~~~~~ 351 (476)
+|.+. ..+..+ .....+...|+ + +++|+++ |++ .|+++++++ .+ ..+.. ......+.+.+.
T Consensus 349 A~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~--~~~~~~s~sp~~ 425 (755)
T 2vyc_A 349 AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPLY 425 (755)
T ss_dssp TTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHH--HHHHTSCSSCCH
T ss_pred cCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHH--HHHHhCCCCHHH
Confidence 99643 332211 01112200132 3 6889876 444 566666543 11 12211 011222345677
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh--------cC--CceEeee-------------------
Q 011856 352 LAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK--------AG--HAICGGY------------------- 399 (476)
Q Consensus 352 ~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~--------~~--~~~~v~~------------------- 399 (476)
+.+++..++++.+.. +++.+++.++.++++++|+++..+ +. .+..+.+
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTT 505 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccc
Confidence 888888888887765 368889999999999999886431 10 0001100
Q ss_pred --------------------ec------eeEEEEEecCC-CcCchhhcccchHHHHHHHHHHHHCCeEeccCCCcceEE-
Q 011856 400 --------------------IS------GMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (476)
Q Consensus 400 --------------------~g------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~- 451 (476)
.| ..+.+...... ...+... ......+.+.|.++||.+...+...+++
T Consensus 506 ~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~----g~~~~~l~~~L~~~gI~~e~~~~~~v~~~ 581 (755)
T 2vyc_A 506 VQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEET----GVPAALVTAWLGRHGIVPTRTTDFQIMFL 581 (755)
T ss_dssp CGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSS----CCCHHHHHHHHHTTTCCCSEECSSEEEEE
T ss_pred hhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCcccc----CCcHHHHHHHHHHCCCEEeecCCCeEEEE
Confidence 01 11111111000 0000000 0112467778888999887665555655
Q ss_pred -eCCCcHHHHHHHHHHHHHHHHH
Q 011856 452 -SLAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 452 -~~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+...|+++++.++++|.++.+.
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHh
Confidence 5667999999999999988643
No 230
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.61 E-value=1.6e-14 Score=145.79 Aligned_cols=280 Identities=16% Similarity=0.158 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHh----hcCCCCccCCCCC
Q 011856 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV----KAGSGVATLGLPD 213 (476)
Q Consensus 139 ~~~~~la~~l~~~~~-~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~----~~g~~~~~~~~~~ 213 (476)
+...++.++++++++ +.+++.+++|++.++++++...+ ..++++|++.+..|+. +...+. ..|..+...+.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s-~~~~~~~~a~~~G~~v~~v~~-- 183 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL-- 183 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC--
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHh-HHHHHHHHHHHCCCEEEEEcC--
Confidence 456788888988885 34456899999955444443322 3466777776655544 333321 23443332211
Q ss_pred CCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe--ccccC
Q 011856 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD--EVMTG 291 (476)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D--Ev~~g 291 (476)
..+. + |+++ ++ +++++|+++.+ +++|.+.+ +++|.++|++||+++|+| +...|
T Consensus 184 ~~~~----------~---d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g 238 (438)
T 1wyu_A 184 EGGR----------T---PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLG 238 (438)
T ss_dssp BTTB----------C---CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGG
T ss_pred cCCc----------c---CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhhcc
Confidence 1110 0 2222 32 36787777766 77899887 999999999999999965 23222
Q ss_pred ccccccchhhccCCCCchhhh-hhhcC-----CCCcEEEEEecHHHHHhhcCCC----------C-------------cc
Q 011856 292 FRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRDIMEMVAPAG----------P-------------MY 342 (476)
Q Consensus 292 ~r~g~~~~~~~~g~~pDi~t~-sK~lg-----~G~~iG~~~~~~~i~~~l~~~~----------~-------------~~ 342 (476)
. .. ....+ .+|++++ +|.|+ +|.++|++++++++++.+.... + ..
T Consensus 239 ~-~~---~~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 239 V-LK---PPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp T-BC---CHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred C-cC---CCccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 2 00 01122 3577765 46543 3568999999998877653210 0 00
Q ss_pred ccCCCCC---cHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCceEeeee-ceeEEEEEecCCCcC
Q 011856 343 QAGTLSG---NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYN 415 (476)
Q Consensus 343 ~~~t~~~---~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~ 415 (476)
..+|.+. +.+...++...+..+.. ++..++..++.+++.++|+++. ++. +.+. ..+..+.+..+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---g~~--~~~~~~~~~~~~~~~~---- 383 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---GVR--PFTPKPFFNEFALALP---- 383 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCE--ECSCSSBCSEEEEECS----
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CeE--ECCCCCeEEEEEEeCC----
Confidence 1233332 22322222222443322 3455666677777777766531 221 1111 22222333211
Q ss_pred chhhcccchHHHHHHHHHHHHCCeEe--ccCC---CcceEEeCC--CcHHHHHHHHHHHHHHH
Q 011856 416 FEDAKKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTSLA--HSSDDIQHTITAAEKVK 471 (476)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~~--~~~~---~~~~~~~~~--~t~e~i~~~~~~l~~~~ 471 (476)
....++.+.|.++||.+ .++. ...+|+++. +|++|+++++++|++++
T Consensus 384 ---------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 384 ---------KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp ---------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ---------CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 01257888999999998 4432 346788765 79999999999998764
No 231
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.54 E-value=3.9e-13 Score=131.66 Aligned_cols=291 Identities=12% Similarity=0.032 Sum_probs=174.7
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhc--cCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCC
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~--~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (476)
.....+++|++|.++.+++..+... .+.++||+ ...-|-+...++.+.|..+..+.. .... +...+
T Consensus 133 ~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p-~~d~-------~~~~i--- 200 (501)
T 3hl2_A 133 TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIEN-VLEG-------DELRT--- 200 (501)
T ss_dssp TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECE-EEET-------TEEEE---
T ss_pred CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEee-eecc-------cccCC---
Confidence 4456888998887777777654322 23356665 677888888888888875443211 0000 01111
Q ss_pred CHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cccccchhhccCC-CCc
Q 011856 232 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPD 308 (476)
Q Consensus 232 d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pD 308 (476)
|++++|++|++++ +.+.+|++.+.+..++.+.+ +++|.++|++||+++++||+|... .....+..+.+.. ..|
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 8999999998864 56777777766554555567 999999999999999999999544 3322222222222 378
Q ss_pred hhhhh--hhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHH
Q 011856 309 LTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQ 382 (476)
Q Consensus 309 i~t~s--K~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~--~~~~~~~~~~~~~l~~ 382 (476)
+++.| |.+-.-++.+.+.. ++++++.+.. .+- ++.+++|.. ....++..+ .+ .+++++..++.++|++
T Consensus 277 ~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yP-Gr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~~ 350 (501)
T 3hl2_A 277 AFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYP-GRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLSN 350 (501)
T ss_dssp EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSC-SCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeecCceEEEeCCHHHHHHHHH---hCC-CCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665 76543222233323 5677776642 221 333444422 222233222 22 6788889999999999
Q ss_pred HHHHHhhhcC-CceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeE----eccCC------------
Q 011856 383 GIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY----FAPSQ------------ 445 (476)
Q Consensus 383 ~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----~~~~~------------ 445 (476)
+|+++...++ ...+.+....-+++.+..... ........+...|..++|- |.++.
T Consensus 351 ~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~ 422 (501)
T 3hl2_A 351 QIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGF 422 (501)
T ss_dssp HHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESST
T ss_pred HHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCc
Confidence 9999877555 222333344445555532210 1111235667777787652 22221
Q ss_pred ------Cc--ceEE--eCCCcHHHHHHHHHHHHHHHHHh
Q 011856 446 ------FE--AGFT--SLAHSSDDIQHTITAAEKVKMRF 474 (476)
Q Consensus 446 ------~~--~~~~--~~~~t~e~i~~~~~~l~~~~~~~ 474 (476)
++ ++.. ...++++|+|.++++|++++.++
T Consensus 423 g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 423 MSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp TTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 1222 36779999999999999999765
No 232
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.51 E-value=1.5e-12 Score=129.28 Aligned_cols=233 Identities=14% Similarity=0.019 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHH-HHHHHHHHHHHhccC-CceEEEEeCCCCCCchhHHhhcCCCCccCCCCCC
Q 011856 139 LLENVLAEMVISAVP--SIEMVRFVNSGT-EACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (476)
Q Consensus 139 ~~~~~la~~l~~~~~--~~e~v~~~~sGs-eA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (476)
..+.++..++.+.++ .....+++|++| .++.+++..+|.... .+.||+. ..-|-+...++.+.|.++..+.....
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 344556666666543 445678999998 666666666665332 3455555 55899888888888876443221000
Q ss_pred CCCCCCCCCceeeccCCCHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011856 215 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (476)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (476)
. +...+ |+++|+++|++++ +.+++|++.|.+..+|.+.+ +++|.++|++||++|++||+|.+.
T Consensus 177 ~--------~~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 177 G--------DELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp T--------TEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred C--------ccCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 0 01111 8999999998765 46788888887766677888 999999999999999999999654
Q ss_pred cccccchhhccCC-CCchhhhh--hhcCCCCcEEEEEe-cHHHHHhhcCCCCccccCCCCCcHHHHHHHHHHHHHhcC--
Q 011856 293 RLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (476)
Q Consensus 293 r~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~~~~-~~~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (476)
+.......+.+.. ..|.+++| |.+..-...+.+.. +++.++.+.. .+. ++-+.+| +.......+..-.+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~-g~~s~Sp-sL~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYP-GRASASP-SLDVLITLLSLGCSGY 316 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSC-SCBCSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhh-cCCcccH-HHHHHHHHHHHHHHHH
Confidence 3221111111211 35777655 88876556677765 5566665542 121 1112233 22222222222111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011856 367 PGTYEYLNKITGELTQGIIDAGKKAG 392 (476)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (476)
.++.++..++.+++++.|+++...++
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g 342 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHN 342 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 33455557788899999988875554
No 233
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.50 E-value=7.6e-14 Score=136.83 Aligned_cols=319 Identities=13% Similarity=0.020 Sum_probs=179.7
Q ss_pred cCCCCcHHHHHHHHHHHHhc--CCCC----CC-----CHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHHHh
Q 011856 112 IIGHADDQVLAALGETMKKG--TSFG----AP-----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARA 177 (476)
Q Consensus 112 ~lG~~~p~v~~a~~~~l~~~--~~~~----~~-----~~~~~~la~~l~~~~~~--~e~v~~-~~sGseA~~~al~~ar~ 177 (476)
..+.-+++|.+++.+.+.+. ...+ .+ .+...+..+.+++++.. .++|+| +.|||++++.+++-...
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 34446899999999887641 1111 11 23445667777777752 257888 48999999999984321
Q ss_pred ccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCC
Q 011856 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (476)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (476)
...+++++....+.++. .+...+...+.....++...+.. .+++.++..++ +++++|.+..+.+
T Consensus 100 ~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~------------~~~~~~~~~i~---~~t~lV~~~h~et 163 (377)
T 3e77_A 100 LKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYT------------KIPDPSTWNLN---PDASYVYYCANET 163 (377)
T ss_dssp GSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSC------------SCCCGGGCCCC---TTCSCEEEESEET
T ss_pred CCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcC------------CCCChHHhccC---CCccEEEEeCccC
Confidence 11246776665555553 12211212121111111111100 02333433333 3566777766666
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCchhhhhhhcCCCCcEEEEEecHHHHHhhc
Q 011856 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336 (476)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t~sK~lg~G~~iG~~~~~~~i~~~l~ 336 (476)
.+|.+.| + +|+++|+++++|-+|+ + |. ..-.+.+++ ...+--|.+| .-.+|++..++++++.+.
T Consensus 164 ~tG~~~p----i-----i~~~~~~~~~vD~~q~-~--g~~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 164 VHGVEFD----F-----IPDVKGAVLVCDMSSN-F--LSKPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLGFAL 228 (377)
T ss_dssp TTTEECS----S-----CCCCTTCCEEEECTTT-T--TSSCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCSCCC
T ss_pred chheEch----h-----hhccCCCEEEEEcccc-c--CCCCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHhhcc
Confidence 6899988 4 5789999999999995 1 11 112223332 2234459996 223888888888765544
Q ss_pred CCCCccc--------cCCC-CCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCc---eEeeee
Q 011856 337 PAGPMYQ--------AGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHA---ICGGYI 400 (476)
Q Consensus 337 ~~~~~~~--------~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~v~~~ 400 (476)
+..+.+. ..++ +.|.....+..++|+.+.+. ...++.+++.++++++|+++. ++. .+....
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~~~r 305 (377)
T 3e77_A 229 RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEPQNR 305 (377)
T ss_dssp TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCGGGB
T ss_pred CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCHHHc
Confidence 2111111 1222 33555666666788877543 455666667777777776541 111 011112
Q ss_pred -ceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC--CcceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 401 -SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 401 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
+..+.|.+.+-. ++.+....+...+.++||.+.++. ...+|++ ..+|++|||.+++.|++++++
T Consensus 306 s~~ivsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 306 SKMNIPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp CSSEEEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 234555553210 112222457778889999987762 2357775 456999999999999998875
No 234
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.40 E-value=5.7e-12 Score=123.03 Aligned_cols=307 Identities=11% Similarity=-0.053 Sum_probs=171.5
Q ss_pred CcHHHHHHHHHHHHhc--CCCC----CC-----CHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHHHhccCC
Q 011856 116 ADDQVLAALGETMKKG--TSFG----AP-----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 181 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~--~~~~----~~-----~~~~~~la~~l~~~~~~--~e~v~~-~~sGseA~~~al~~ar~~~~~ 181 (476)
-+|+|.+++.+.+.+. ...+ .+ .+...+..+.+++++.. .++|+| ++|||++++.+++-. ..+
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~---~~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL---ALN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---CCS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc---CCC
Confidence 4899999999877531 1111 11 24455677778887752 347888 999999999999843 244
Q ss_pred ceEEEEeCCCCCCchhH-HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCC
Q 011856 182 ERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (476)
Q Consensus 182 ~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (476)
+++.....+.+++.... +...|..+..++.+. .+. +. .+++. + |+ +++++|.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~-~g~--------~~---~~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSE-ESN--------FD---HIPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECT-TTT--------SC---SCCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEeccc-CcC--------CC---cCChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 54433333344432111 111233222211111 110 00 02222 2 43 2566676665555678
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCC-CCchhhhh--hhcCCCCcEEEEEecHHHHHhhcC
Q 011856 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAP 337 (476)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pDi~t~s--K~lg~G~~iG~~~~~~~i~~~l~~ 337 (476)
.+.+. +++ +|+++++|-+|+ + |. ..+++ ..|++++| |.+| .-.+|++..++++.+.+.+
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~-~--g~----~~id~~~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD-F--FS----RKVDFSNIALFYGGVQKNAG-ISGLSCIFIRKDMLERSKN 216 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG-T--TS----SCCCCTTEEEEEEETTTTSS-CTTCEEEEEEHHHHHHHHT
T ss_pred eeCCc---------ccc-cCCEEEEEcccc-c--CC----CCCCcccCCEEEEechhccC-CCccEEEEEcHHHHhhhcC
Confidence 87652 333 499999999995 1 11 01111 24666554 9996 2238999999998877653
Q ss_pred -CCCcc--------ccCCC-CCcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCceEee-eece
Q 011856 338 -AGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISG 402 (476)
Q Consensus 338 -~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~ 402 (476)
..+.+ ...++ +.|..+..+..++|+.+.+. ...++.+++.++++++|+++..-+....... ....
T Consensus 217 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ 296 (361)
T 3m5u_A 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLM 296 (361)
T ss_dssp CCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSS
T ss_pred CCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCe
Confidence 11111 11122 34566666777888887654 3455666666666666665420000000001 1123
Q ss_pred eEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEEe--CCCcHHHHHHHHHHHHHHHHH
Q 011856 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVKMR 473 (476)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~--~~~t~e~i~~~~~~l~~~~~~ 473 (476)
.+.+.+.+. .... ..+...|.++||.+..+.. ..+|++ ..+|++|||++++.|+++.++
T Consensus 297 ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 297 NVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp EEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 445554320 0111 3577888899999877632 357876 445999999999999998765
No 235
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.40 E-value=7.2e-13 Score=130.60 Aligned_cols=319 Identities=12% Similarity=0.002 Sum_probs=173.5
Q ss_pred CEEEecccChhhccCCCCcHHHHHHHHHHHHhcC--CCC-------C--CCHHHHHHHHHHHhhCCC--CCeEEE-eCCH
Q 011856 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-------A--PCLLENVLAEMVISAVPS--IEMVRF-VNSG 164 (476)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~l~~~~--~~~-------~--~~~~~~~la~~l~~~~~~--~e~v~~-~~sG 164 (476)
+.|+|..+. . .-+|+|.+++.+.+.+.. ..+ . ..+...+..+.+++++.. .++|+| +.||
T Consensus 27 ~~yl~~agp---t---~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGP---A---MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSS---C---CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCC---C---CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 356664443 2 148999999987664311 000 0 122334566667766642 246888 6999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCC-CCccCCCC-CCCCCCCCCCCceeeccCCCHHHHHHHHhc
Q 011856 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFEN 242 (476)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (476)
|++++.+++-. ...++++++...+.++. .+....... .+..++.+ ...|. . .++++++..++
T Consensus 101 T~a~n~ai~~l--~~~gd~v~~~~~~~~~~-~~~~~a~~~G~v~~v~~~~~~~G~---------~---~~~~~~~~~l~- 164 (386)
T 3qm2_A 101 RGQFAGVPLNL--LGDKTTADYVDAGYWAA-SAIKEAKKYCAPQIIDAKITVDGK---------R---AVKPMREWQLS- 164 (386)
T ss_dssp THHHHHHHHHH--CTTCCEEEEEESSHHHH-HHHHHHTTTSEEEEEECEEEETTE---------E---EECCGGGCCCC-
T ss_pred hHHHHHHHHhc--cCCCCeEEEEeCCHHHH-HHHHHHHHhCCeEEEecCcccCCC---------C---CCchHHHhhcC-
Confidence 99999999843 33456776666555553 222211111 11111100 00110 0 03345555454
Q ss_pred CCCCeEEEEEcccCCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCccccc-cchhhccCCCCchhhhhhhcCCCC
Q 011856 243 NKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGL 320 (476)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pDi~t~sK~lg~G~ 320 (476)
+++++|.+..+.+.+|.+ .| +++|. +|+++++|-+|+ + |. ..-.+.+++ ++.+--|.+| .-
T Consensus 165 --~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~--g~~pidv~~~~~--~~~s~hK~lG-P~ 227 (386)
T 3qm2_A 165 --DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-I--LSAPLDVSRYGV--IYAGAQKNIG-PA 227 (386)
T ss_dssp --TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-T--TSSCCCGGGCSE--EEEETTTTTC-CT
T ss_pred --CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-c--CCCCCCccccCE--EEEecccccC-CC
Confidence 357777777776778885 77 44443 899999999995 1 11 112223332 3334559995 22
Q ss_pred cEEEEEecHHHHHhhcCCCCcc--------ccCCC-CCcHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHH
Q 011856 321 PVGAYGGRRDIMEMVAPAGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDA 387 (476)
Q Consensus 321 ~iG~~~~~~~i~~~l~~~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~ 387 (476)
-+|++..++++.+.+.+..+.+ ....+ +.|..+..+..++|+.+.+ ++..++.+++.++++++|+++
T Consensus 228 G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~ 307 (386)
T 3qm2_A 228 GLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS 307 (386)
T ss_dssp TEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3999999988765544221111 01111 2344455566677776643 345566666777777777654
Q ss_pred hhhcCCce---Eeee-eceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCCC--cceEEe--CCCcHHH
Q 011856 388 GKKAGHAI---CGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDD 459 (476)
Q Consensus 388 ~~~~~~~~---~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~--~~~t~e~ 459 (476)
++.. +... ....+.+.+.+. ... ..+...|.++||.+..+.. ..+|++ ..+|++|
T Consensus 308 ----~~~~~~~~~~~rs~~iv~f~~~~~------------~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~ed 370 (386)
T 3qm2_A 308 ----DFYRNDVAQANRSRMNVPFQLADN------------TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEG 370 (386)
T ss_dssp ----SSEECCBCGGGBCSSEEEEEESSG------------GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHH
T ss_pred ----CCcccCCCHHHcCceEEEEECCCc------------ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHH
Confidence 2211 1111 123455555321 111 4566778899999876522 357876 4458999
Q ss_pred HHHHHHHHHHHHHH
Q 011856 460 IQHTITAAEKVKMR 473 (476)
Q Consensus 460 i~~~~~~l~~~~~~ 473 (476)
||++++.|+++.++
T Consensus 371 Id~l~~~l~~~~~~ 384 (386)
T 3qm2_A 371 VKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.05 E-value=1.1e-08 Score=99.89 Aligned_cols=313 Identities=15% Similarity=0.069 Sum_probs=163.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHhhCCCCCeE-----EEeCCHHHHHHHHHHHHHhcc
Q 011856 116 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVPSIEMV-----RFVNSGTEACMGVLRLARAFT 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~~~~~-----------~~~~~~la~~l~~~~~~~e~v-----~~~~sGseA~~~al~~ar~~~ 179 (476)
..|.|.+|+-..+.+-..-||| ++.+.-..++.+++|. .+.. +=..||+.||.++... ...
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~-a~~A~w~VNVQP~SGs~AN~avy~A--ll~ 142 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD-LDPAQWGVNVQPYSGSPANLAVYTA--LLQ 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTT-CCTTTEEEECCCSSHHHHHHHHHHH--HCC
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhC-CCccccCCCCCcCCHHHHHHHHHHH--HcC
Confidence 4688888877776652111211 2333333345556664 3321 2345899999999983 234
Q ss_pred CCceEEEEeCCCCCCchhH-------HhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEE
Q 011856 180 GRERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (476)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (476)
++++|+.++-..-|+.... ...+|. . ...++.....+.-.+ |.+.++++.+++ +.++||+
T Consensus 143 PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~--~------~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~--kPklIi~ 209 (490)
T 3ou5_A 143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSI--F------FESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIA 209 (490)
T ss_dssp -CCCEECBC------------------------------------CBCEETTTTEE---CHHHHHHHHHHH--CCSEEEE
T ss_pred CCCEEEecccCCCCcccccccCCCcccccccc--c------ccccccccCCCCCcc---cHHHHHHHHhhc--CCCeEEE
Confidence 5666776643322221110 000111 0 000000000000011 889999988876 5667777
Q ss_pred cccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-cccccchhhccCCCCchhhh--hhhcCCCCcEEEEEec
Q 011856 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR 328 (476)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pDi~t~--sK~lg~G~~iG~~~~~ 328 (476)
-...- -...+ +++++++|++.|++|++|=+| +|+ -.|.+ . ..+.. .|++|. -|+|.| -|.|.++++
T Consensus 210 G~SaY--~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~-p-sP~~~-ADvVTtTTHKTLrG-PrGG~Il~~ 279 (490)
T 3ou5_A 210 GTSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVI-P-SPFKH-ADIVTTTTHKTLRG-ARSGLIFYR 279 (490)
T ss_dssp CCSSC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSS-C-CGGGT-CSEEEEESSSTTCS-CSCEEEEEE
T ss_pred CCccC--ccccC----HHHHHHHHhhcccEEEechhhhhhhhccccc-C-Ccccc-ceEEeccccccccC-CCceEEEec
Confidence 54321 22345 999999999999999999999 677 33321 1 12222 588854 499874 467777776
Q ss_pred H---------------HHHHhhcCCCCccccCCCCCcHHHHHHHHHH-HH-HhcC--CCHHHHHHHHHHHHHHHHHHHhh
Q 011856 329 R---------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT-LK-RLKE--PGTYEYLNKITGELTQGIIDAGK 389 (476)
Q Consensus 329 ~---------------~i~~~l~~~~~~~~~~t~~~~~~~~aaa~aa-l~-~~~~--~~~~~~~~~~~~~l~~~L~~~~~ 389 (476)
+ ++.+.+.. ...-+..+++-.-..||++. +. .+.. .++.+++.++.+.|.+.|.+.+.
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~---aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~ 356 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINF---AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 356 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHH---HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccchhHHHHHHHHHh---hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 33344431 11111222322333333322 33 2332 56778888888888888887643
Q ss_pred hcCCceEeeeeceeEEEEEecCCCcCchhhcccchHHHHHHHHHHHHCCeEeccCC---------CcceEEe------CC
Q 011856 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS------LA 454 (476)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~~~~~------~~ 454 (476)
+. +.. .-...++.+++..... ...+..+.|-+.||.+.... ...+|+. -.
T Consensus 357 ~v--vsG-gTdnHlvLvDl~~~g~------------tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG 421 (490)
T 3ou5_A 357 SL--VSG-GTDNHLVLVDLRPKGL------------DGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp EE--GGG-SCSSSEEEEECGGGTC------------CHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred ee--ecC-CCCceEEEEeccccCC------------CHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCC
Confidence 21 110 0123355566532111 12344556667899876321 1246772 46
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 011856 455 HSSDDIQHTITAAEKVKM 472 (476)
Q Consensus 455 ~t~e~i~~~~~~l~~~~~ 472 (476)
..++|++++.+.|.+++.
T Consensus 422 ~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 788999998888887764
No 237
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=60.93 E-value=13 Score=30.29 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=35.5
Q ss_pred CHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHH-HHHHHhCCE-EEEecccc
Q 011856 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR-RITKENGAL-LIFDEVMT 290 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~-~l~~~~g~l-lI~DEv~~ 290 (476)
+.+.|.++++++ ++..|+++-+.++.|...+..+..+... .+..++++. ..+||-++
T Consensus 43 ~~~~l~~li~~~--~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDY--TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTS--EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 689999999986 6777777644454455433222223333 445556875 55799886
No 238
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=51.91 E-value=15 Score=31.57 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=30.2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
..++||||-..+..|.... +.++.+++++||+.+|.
T Consensus 159 ~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 5789999977456688888 88899999999998874
No 239
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=47.12 E-value=26 Score=30.20 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=29.4
Q ss_pred CeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 246 EIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 246 ~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
..++||||-+ .+..|.... +.++.+++++||+.+|.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 5788999983 345677777 88899999999999884
No 240
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=38.92 E-value=37 Score=29.49 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.7
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
..++||||-. +..|.... +.++.+++++||+.+|.
T Consensus 167 ~Pa~vicEi~-~~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCCEEE
Confidence 5788888866 45677777 88899999999998884
No 241
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=38.27 E-value=36 Score=29.78 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.5
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
..++||||=.+ ..|.... +.++.+++++||+.+|.
T Consensus 178 ~Pa~VicEi~~-ddG~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMMG-DDGNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEBC-TTSSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeC-CCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 67899999875 4577887 88899999999998884
No 242
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=37.89 E-value=2.2e+02 Score=26.83 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCC-ceEEEEe
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGR-ERIIKFE 188 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~-~~ii~~~ 188 (476)
.+.++.+.+.+.++.|.. .+...+...+..+.+.+.+|..-.+.+ .|++.. ...|+++++.+..- -.+..++
T Consensus 142 ~~e~~~~~a~~~~~~Gf~~~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~-~~~A~~~~~~l~~~~~~l~~iE 220 (379)
T 3r0u_A 142 NVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWN-LAQTKQFIEEINKYSLNVEIIE 220 (379)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCC-HHHHHHHHHHHHTSCCCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcC-HHHHHHHHHHHhhcCCCcEEEE
Confidence 345677777776666521 122223445666777777753234544 455544 56777877766552 2455565
Q ss_pred CCCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 189 GCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 189 ~~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
....... ......... ...|...+ + ...+..+++++++.. ....|.+.+.. .|.+..
T Consensus 221 eP~~~~d~~~~~~l~~~----~~iPIa~d-------E----~~~~~~~~~~~i~~~--a~d~v~~k~~~--~GGi~~--- 278 (379)
T 3r0u_A 221 QPVKYYDIKAMAEITKF----SNIPVVAD-------E----SVFDAKDAERVIDEQ--ACNMINIKLAK--TGGILE--- 278 (379)
T ss_dssp CCSCTTCHHHHHHHHHH----CSSCEEES-------T----TCSSHHHHHHHHHTT--CCSEEEECHHH--HTSHHH---
T ss_pred CCCCcccHHHHHHHHhc----CCCCEEeC-------C----ccCCHHHHHHHHHcC--CCCEEEECccc--cCCHHH---
Confidence 5544322 222111110 00111000 0 012688888888753 34566666654 233444
Q ss_pred HHHHHHHHHHHhCCEEEEe
Q 011856 268 FLNAIRRITKENGALLIFD 286 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.++.-
T Consensus 279 -~~~ia~~A~~~gi~~~~~ 296 (379)
T 3r0u_A 279 -AQKIKKLADSAGISCMVG 296 (379)
T ss_dssp -HHHHHHHHHHTTCEEEEC
T ss_pred -HHHHHHHHHHcCCEEEEe
Confidence 788999999999998764
No 243
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=36.84 E-value=42 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHH
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
+.+++|.++|+++|.-+|+|=.-. ..+++|+.+|-+.+=|-+| .|+|+=+-...+++..
T Consensus 74 ~~~~~l~~~a~~~g~~vi~DVsp~--------~~~~Lg~s~~dl~~f~~lGi~gLRLD~Gf~~~eia~ 133 (385)
T 1x7f_A 74 AEFKEIINHAKDNNMEVILDVAPA--------VFDQLGISYSDLSFFAELGADGIRLDVGFDGLTEAK 133 (385)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTT--------CC------CCCTHHHHHHTCSEEEESSCCSSHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCHH--------HHHHcCCCHHHHHHHHHcCCCEEEEcCCCCHHHHHH
Confidence 448999999999999999994443 2355666666666666677 5777755545555544
No 244
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=36.55 E-value=2.4e+02 Score=26.84 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCC---------CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc-
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAP---------CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT- 179 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~---------~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~- 179 (476)
.+.++.+.+.+.++.|.. .+.. .+...+..+.+.+.+|+ ..+++ .|++.. ...|++.++.+.
T Consensus 165 ~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d-~~L~vDaN~~w~-~~~A~~~~~~L~~ 242 (393)
T 3u9i_A 165 SVTAAARAAQAIVARGVTTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPT-ARLILDGNCGYT-APDALRLLDMLGV 242 (393)
T ss_dssp -CHHHHHHHHHHHTTTCCEEEEECC-------CHHHHHHHHHHHHHHHHHSTT-SEEEEECCSCCC-HHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeCCCcccccccccHHHHHHHHHHHHHHCCC-CeEEEEccCCCC-HHHHHHHHHHHhh
Confidence 567777777777665421 1212 11233455566666754 35555 455544 566777776662
Q ss_pred CCceEEEEeCCCCC-CchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCC
Q 011856 180 GRERIIKFEGCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (476)
Q Consensus 180 ~~~~ii~~~~~yhg-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (476)
.+-++..++..... ............ +.|...+ + ...+..+++++++.. ....|.+.+..
T Consensus 243 ~~~~i~~iEeP~~~~d~~~~~~l~~~~----~iPIa~d-------E----~~~~~~~~~~~i~~~--a~d~i~~k~~~-- 303 (393)
T 3u9i_A 243 HGIVPALFEQPVAKDDEEGLRRLTATR----RVPVAAD-------E----SVASATDAARLARNA--AVDVLNIKLMK-- 303 (393)
T ss_dssp TTCCCSEEECCSCTTCTTHHHHHHHTC----SSCEEES-------T----TCCSHHHHHHHHHTT--CCSEEEECHHH--
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHhhC----CCcEEeC-------C----cCCCHHHHHHHHHcC--CCCEEEecccc--
Confidence 22345455544432 222222221110 0110000 0 012688888888753 45677788776
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 259 SGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
|| +.. ..++.++|+++|+.++.-
T Consensus 304 GG-it~----~~~ia~~A~~~gi~~~~~ 326 (393)
T 3u9i_A 304 CG-IVE----ALDIAAIARTAGLHLMIG 326 (393)
T ss_dssp HC-HHH----HHHHHHHHHHHTCEEEEC
T ss_pred cC-HHH----HHHHHHHHHHcCCeEEec
Confidence 55 444 788999999999998764
No 245
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=36.15 E-value=2.4e+02 Score=26.36 Aligned_cols=145 Identities=12% Similarity=0.127 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCC-CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc-CCceEEEE
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAP-CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-GRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~-~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~-~~~~ii~~ 187 (476)
.+.++.+.+.+.++.|.. .+.. .+...+..+.+.+.+|+. .+++ .|++.. ...|+++++.+. .+-++..+
T Consensus 143 ~~e~~~~~a~~~~~~G~~~iK~Kvg~~~~~~d~~~v~avr~~~~~~-~l~vDaN~~~~-~~~A~~~~~~L~~~~~~i~~i 220 (365)
T 3ik4_A 143 DEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQAAPTA-PLIVDGNCGYD-VERALAFCAACKAESIPMVLF 220 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCSSCHHHHHHHHHHHHHHSSSC-CEEEECTTCCC-HHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHHHHHhCCCC-eEEEECCCCCC-HHHHHHHHHHHhhCCCCceEE
Confidence 456677777776666522 1222 233445566677777653 4555 455544 456777766662 23356666
Q ss_pred eCCCCCC-chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+...... ........... ..|...+ + ...+..+++++++.. ....|.+.+.. || +..
T Consensus 221 EeP~~~~d~~~~~~l~~~~----~ipIa~d-------E----~~~~~~~~~~~i~~~--a~d~v~ik~~~--GG-it~-- 278 (365)
T 3ik4_A 221 EQPLPREDWAGMAQVTAQS----GFAVAAD-------E----SARSAHDVLRIAREG--TASVINIKLMK--AG-VAE-- 278 (365)
T ss_dssp ECCSCTTCHHHHHHHHHHS----SSCEEES-------T----TCSSHHHHHHHHHHT--CCSEEEECHHH--HC-HHH--
T ss_pred ECCCCcccHHHHHHHHhhC----CCCEEEC-------C----CCCCHHHHHHHHHhC--CCCEEEEcCCc--cC-HHH--
Confidence 5555432 22222211100 0111000 0 012688888888753 45667778776 45 444
Q ss_pred HHHHHHHHHHHHhCCEEEEe
Q 011856 267 DFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.++.=
T Consensus 279 --~~~i~~~A~~~gi~~~~~ 296 (365)
T 3ik4_A 279 --GLKMIAIAQAAGLGLMIG 296 (365)
T ss_dssp --HHHHHHHHHHHTCEEEEC
T ss_pred --HHHHHHHHHHcCCeEEec
Confidence 788999999999988764
No 246
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=35.76 E-value=43 Score=24.99 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=29.3
Q ss_pred CHHHHHHHHhcCCCCeEEEEE-cccCCCCCcccCCH----HHHHHHHHHHHHhCCEE-EEecccc
Q 011856 232 DVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKP----DFLNAIRRITKENGALL-IFDEVMT 290 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~-ep~~~~~G~i~~~~----~~l~~l~~l~~~~g~ll-I~DEv~~ 290 (476)
+++.|+++++++ ++..+++ .|.+. .|...+.. .|.+.|.+ + ++.+ .+||=+|
T Consensus 39 ~~~~l~~li~e~--~v~~iVvGlP~~m-dGt~~~~~~~~~~f~~~L~~---~-~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRRE--GLGKLVVGLPLRT-DLKESAQAGKVLPLVEALRA---R-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHH--TCCEEEEECCCCC-CSSSCCCSSTTHHHHHHHHH---T-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeccCC-CCCcCHHHHHHHHHHHHHhc---C-CCCEEEECCCCC
Confidence 477888888875 4555555 56543 33433332 34443333 3 6654 4888664
No 247
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=34.74 E-value=2.3e+02 Score=26.37 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=77.0
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
.+.++.+.+.+.++.|.. .+...+...+..+.+.+.++..-.+.+ .|+|.. .+.|+++++.+.. -.+..++.
T Consensus 139 ~~~~~~~~a~~~~~~G~~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~-~~~a~~~~~~L~~-~~i~~iEq 216 (354)
T 3jva_A 139 EPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWT-PKDAVKAIQALAD-YQIELVEQ 216 (354)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSC-HHHHHHHHHHTTT-SCEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC-HHHHHHHHHHHHh-cCCCEEEC
Confidence 355666666666665521 122223445556666666632223444 455553 4567777766644 44555555
Q ss_pred CCCCCc-hhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 190 CYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 190 ~yhg~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
.+.... .......... ..|...+ + ...+.++++++++.. ....|.+.+... |.+..
T Consensus 217 P~~~~d~~~~~~l~~~~----~iPIa~d-------E----~~~~~~~~~~~l~~~--~~d~v~~k~~~~--GGit~---- 273 (354)
T 3jva_A 217 PVKRRDLEGLKYVTSQV----NTTIMAD-------E----SCFDAQDALELVKKG--TVDVINIKLMKC--GGIHE---- 273 (354)
T ss_dssp CSCTTCHHHHHHHHHHC----SSEEEES-------T----TCCSHHHHHHHHHHT--CCSEEEECHHHH--TSHHH----
T ss_pred CCChhhHHHHHHHHHhC----CCCEEEc-------C----CcCCHHHHHHHHHcC--CCCEEEECchhc--CCHHH----
Confidence 544322 2221111100 0010000 0 012688888888753 455666776542 33444
Q ss_pred HHHHHHHHHHhCCEEEEe
Q 011856 269 LNAIRRITKENGALLIFD 286 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.+++-
T Consensus 274 ~~~i~~~A~~~gi~~~~~ 291 (354)
T 3jva_A 274 ALKINQICETAGIECMIG 291 (354)
T ss_dssp HHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHcCCeEEec
Confidence 788999999999998753
No 248
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=33.09 E-value=2.4e+02 Score=26.73 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=81.6
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCC-CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhcc-CCceEEEE
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAP-CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-GRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~-~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~-~~~~ii~~ 187 (476)
.+.++.+.+.+.++.|.. .+.. .+...+..+.+.+.+|+. .+++ .|++.. ...|++.++.+. .+-++..+
T Consensus 144 ~~e~~~~~a~~~~~~G~~~iKlKvg~~~~~~d~~~v~avR~~~~~~-~L~vDaN~~w~-~~~A~~~~~~L~~~~~~i~~i 221 (389)
T 3s5s_A 144 SPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAAAPGA-SLILDGNGGLT-AGEALALVAHARRLGADVALL 221 (389)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEECCGGGTTTHHHHHHHHHHHCTTC-EEEEECTTCSC-HHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCChHHHHHHHHHHHHhCCCC-eEEEECCCCCC-HHHHHHHHHHHhhCCCCeEEE
Confidence 567777777777766531 1211 222345556677777643 5555 455543 556777776662 33456666
Q ss_pred eCCCCCC-chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCH
Q 011856 188 EGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (476)
Q Consensus 188 ~~~yhg~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (476)
+...... ......+.... ..|...+ + ...+..+++++++.. ....|.+.+.. || +..
T Consensus 222 EeP~~~~d~~~~~~l~~~~----~iPIa~d-------E----s~~~~~~~~~~i~~~--a~d~v~~k~~~--GG-it~-- 279 (389)
T 3s5s_A 222 EQPVPRDDWDGMKEVTRRA----GVDVAAD-------E----SAASAEDVLRVAAER--AATVVNIKLMK--GG-IAE-- 279 (389)
T ss_dssp ECCSCTTCHHHHHHHHHHS----SSCEEES-------T----TCSSHHHHHHHHHTT--CCSEEEECHHH--HH-HHH--
T ss_pred ECCCCcccHHHHHHHHhhC----CCCEEEC-------C----CCCCHHHHHHHHHcC--CCCEEEecCCC--CC-HHH--
Confidence 6655432 22222221110 0111000 0 012688888888753 45667777766 44 444
Q ss_pred HHHHHHHHHHHHhCCEEEEec
Q 011856 267 DFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DE 287 (476)
..++.++|+++|+.++.--
T Consensus 280 --~~~i~~~A~~~gi~~~~~~ 298 (389)
T 3s5s_A 280 --ALDIAAVARAAGLGLMIGG 298 (389)
T ss_dssp --HHHHHHHHHHTTCEEEECC
T ss_pred --HHHHHHHHHHcCCeEEecC
Confidence 7889999999999987643
No 249
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=32.49 E-value=25 Score=25.37 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 011856 269 LNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~ 290 (476)
-.+|++++++||+.++.|.--.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 5789999999999999997553
No 250
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=31.22 E-value=21 Score=18.71 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=12.4
Q ss_pred eecCCEEEEcCCCEE
Q 011856 87 SVKGSHMWDIDGNEY 101 (476)
Q Consensus 87 ~~~G~~~~d~dG~~~ 101 (476)
+.+|+++|.+.|..|
T Consensus 11 r~kgarlwyvggtq~ 25 (26)
T 1gff_3 11 KSKGARLWYVGGTQY 25 (26)
T ss_pred CCCceEEEEecceec
Confidence 689999998887665
No 251
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=31.18 E-value=2.2e+02 Score=26.76 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
.+.++.+.+.+.++.|.. .+...+...+..+.+.+.++..-.+.+ .|+|.. .+.|+++++.+.. -.+..++.
T Consensus 140 ~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~-~~~A~~~~~~l~~-~~i~~iEq 217 (368)
T 3q45_A 140 EPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWS-VETAIETLTLLEP-YNIQHCEE 217 (368)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBC-HHHHHHHHHHHGG-GCCSCEEC
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCC-hHHHHHHHHHHhh-cCCCEEEC
Confidence 455666666666665521 122223344555666666632123333 455544 4556666655533 23334444
Q ss_pred CCCCC-chhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 190 CYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 190 ~yhg~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
.+... .......... ...|...+ + ...+.++++++++.. ....|.+.+.. .|.+..
T Consensus 218 P~~~~~~~~~~~l~~~----~~iPIa~d-------E----~~~~~~~~~~~~~~~--~~d~v~~k~~~--~GGit~---- 274 (368)
T 3q45_A 218 PVSRNLYTALPKIRQA----CRIPIMAD-------E----SCCNSFDAERLIQIQ--ACDSFNLKLSK--SAGITN---- 274 (368)
T ss_dssp CBCGGGGGGHHHHHHT----CSSCEEES-------T----TCCSHHHHHHHHHTT--CCSEEEECTTT--TTSHHH----
T ss_pred CCChhHHHHHHHHHhh----CCCCEEEc-------C----CcCCHHHHHHHHHcC--CCCeEEechhh--cCCHHH----
Confidence 43321 1111111110 00110000 0 012688899999853 45567777653 344555
Q ss_pred HHHHHHHHHHhCCEEEEe
Q 011856 269 LNAIRRITKENGALLIFD 286 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.++.-
T Consensus 275 ~~~i~~~A~~~gi~~~~~ 292 (368)
T 3q45_A 275 ALNIIRLAEQAHMPVQVG 292 (368)
T ss_dssp HHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHcCCcEEec
Confidence 788999999999988763
No 252
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=31.09 E-value=1.2e+02 Score=28.06 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=31.2
Q ss_pred CHHHHHHHHhcCC-CCeEEEEEcccCCCCCcccCC--HHHHHHHHHHHHHhCCEEEEec
Q 011856 232 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPK--PDFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 232 d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~--~~~l~~l~~l~~~~g~llI~DE 287 (476)
+.++++.+.++.+ .-++.-+- +. .+|....+ .+.++++.++|+++|+.+|+|=
T Consensus 70 ~~~~~~~l~~~~G~N~VRi~~~-~~--~~~~~~~~~~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 70 NKDSLKWLRDDWGITVFRAAMY-TA--DGGYIDNPSVKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp SHHHHHHHHHHTCCSEEEEEEE-SS--TTSTTTCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEeE-EC--CCCcccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4566766655433 23444332 22 22333222 3557888899999999999883
No 253
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=30.97 E-value=54 Score=29.61 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccC---------CHHHHHHHHHHHHHhCCEEEE
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAP---------KPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~---------~~~~l~~l~~l~~~~g~llI~ 285 (476)
++.+++++++....-+=+|+-|-...+|.... ...+++.|.++|+++++.+|+
T Consensus 39 l~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~ 100 (281)
T 3p8k_A 39 ETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVA 100 (281)
T ss_dssp HHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEE
Confidence 45555666542223344667676655565432 356799999999999998764
No 254
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.65 E-value=1.4e+02 Score=24.36 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCeEeccCCCcceEEeCCCcHHHHHHHHHHHHHHH
Q 011856 425 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVK 471 (476)
Q Consensus 425 ~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~~t~e~i~~~~~~l~~~~ 471 (476)
....++.+.|.++||-+.-.......+++...+++.++++++|.+.+
T Consensus 110 Gv~a~~f~aL~~~~InI~~is~Se~~is~vv~~~d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 110 EVPAKMFQAVASTGANIEMIATSEVRISVIIPAEYAEAALRAVHQAF 156 (167)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHH
Confidence 44578888999998765332222347778888999999999988764
No 255
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=28.44 E-value=2.5e+02 Score=26.28 Aligned_cols=143 Identities=12% Similarity=0.087 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
...++.+++.+..+.|.. .+...+...+..+.+.+.++..-.+.+ .|+|.. .+.++++++.+..+-.+ .++.
T Consensus 146 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~-~~~a~~~~~~l~~~~~i-~iE~ 223 (371)
T 2ps2_A 146 EPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLS-VETALRLLRLLPHGLDF-ALEA 223 (371)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCC-HHHHHHHHHHSCTTCCC-EEEC
T ss_pred CHHHHHHHHHHHHHhChheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcC-HHHHHHHHHHHHhhcCC-cCcC
Confidence 455666666666655421 122223344555666665642223444 355543 46677777676233345 5566
Q ss_pred CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeec-cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
.++ ...........- . .| +..- ...+.++++++++.. ..-.|.+.+... |.+..
T Consensus 224 P~~-~~~~~~~l~~~~--~--iP------------I~~dE~~~~~~~~~~~i~~~--~~d~v~ik~~~~--GGit~---- 278 (371)
T 2ps2_A 224 PCA-TWRECISLRRKT--D--IP------------IIYDELATNEMSIVKILADD--AAEGIDLKISKA--GGLTR---- 278 (371)
T ss_dssp CBS-SHHHHHHHHTTC--C--SC------------EEESTTCCSHHHHHHHHHHT--CCSEEEEEHHHH--TSHHH----
T ss_pred CcC-CHHHHHHHHhhC--C--CC------------EEeCCCcCCHHHHHHHHHhC--CCCEEEechhhc--CCHHH----
Confidence 555 332222222210 0 11 1100 112688999999864 455677776542 33444
Q ss_pred HHHHHHHHHHhCCEEEE
Q 011856 269 LNAIRRITKENGALLIF 285 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~ 285 (476)
..++.++|+++|+.++.
T Consensus 279 ~~~i~~~A~~~g~~~~~ 295 (371)
T 2ps2_A 279 GRRQRDICLAAGYSVSV 295 (371)
T ss_dssp HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCeEEe
Confidence 78899999999998875
No 256
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A
Probab=26.99 E-value=3.7e+02 Score=25.35 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCC---CHHH--HHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceE
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAP---CLLE--NVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERI 184 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~---~~~~--~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~i 184 (476)
.+.++.+.+.+.++.|.. .+.+ .... .+..+.+.+.++..-.+++ .|++.. ...|+++++.+...-.+
T Consensus 145 ~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~-~~~A~~~~~~l~~~~~i 223 (386)
T 3fv9_G 145 TPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLT-VEHALRMLSLLPPGLDI 223 (386)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCC-HHHHHHHHHHSCSSCCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC-HHHHHHHHHHhhccCCc
Confidence 455677777666665521 1211 2222 3444555555532224444 455554 56678877777333345
Q ss_pred EEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccC
Q 011856 185 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264 (476)
Q Consensus 185 i~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~ 264 (476)
.++.... ............ ..|...+ + ...+.++++++++.. ....|.+.+.. .|.+..
T Consensus 224 -~iEeP~~-~~~~~~~l~~~~----~iPIa~d-------E----~~~~~~~~~~~~~~~--a~d~v~~k~~~--~GGit~ 282 (386)
T 3fv9_G 224 -VLEAPCA-SWAETKSLRARC----ALPLLLD-------E----LIQTETDLIAAIRDD--LCDGVGLKVSK--QGGITP 282 (386)
T ss_dssp -EEECCCS-SHHHHHHHHTTC----CSCEEES-------T----TCCSHHHHHHHHHTT--CCSEEEEEHHH--HTSHHH
T ss_pred -EEecCCC-CHHHHHHHHhhC----CCCEEeC-------C----CcCCHHHHHHHHHhC--CCCEEEECccc--cCCHHH
Confidence 5555555 332222222110 0111000 0 012688899998753 45566666644 233444
Q ss_pred CHHHHHHHHHHHHHhCCEEEEe
Q 011856 265 KPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.+.+=
T Consensus 283 ----~~~i~~~A~~~gi~~~~~ 300 (386)
T 3fv9_G 283 ----MLRQRAIAAAAGMVMSVQ 300 (386)
T ss_dssp ----HHHHHHHHHHTTCEEEEE
T ss_pred ----HHHHHHHHHHcCCEEEeC
Confidence 788999999999998754
No 257
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=26.94 E-value=35 Score=25.44 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 011856 268 FLNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~ 290 (476)
.-++|++++++||+.++.|.--.
T Consensus 43 ~A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCeEEECHHHH
Confidence 36789999999999999997653
No 258
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=26.86 E-value=36 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 011856 269 LNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~ 290 (476)
-.+|+++++++|+.++.|.--.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEECHHHH
Confidence 5789999999999999997553
No 259
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=26.81 E-value=51 Score=31.27 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCccccccchhhccCCCCchhhhhhhcC-CCCcEEEEEecHHHHH
Q 011856 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pDi~t~sK~lg-~G~~iG~~~~~~~i~~ 333 (476)
+.+++|.++|+++|.-+|+|=.-. ..+++|+.+|-+.+=|-+| .|+|+=+-...+++..
T Consensus 50 ~~~~~l~~~a~~~g~~vi~DIsp~--------~l~~Lg~s~~dl~~~~~lGi~glRLD~Gf~~~eia~ 109 (372)
T 2p0o_A 50 QRLTDLGAIAKAEKMKIMVDISGE--------ALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAH 109 (372)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECHH--------HHHTTTCBTTBCHHHHHHTCCEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCHH--------HHHHcCCCHHHHHHHHHcCCCEEEEcCCCCHHHHHH
Confidence 448899999999999999994433 3456777777666667777 5788765544455444
No 260
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=26.77 E-value=1.4e+02 Score=25.63 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=25.8
Q ss_pred eEEEEEcccCCC---CCcc-cCCHHHHHHHHHHHHHhCCEEE
Q 011856 247 IAAIILEPVVGN---SGFI-APKPDFLNAIRRITKENGALLI 284 (476)
Q Consensus 247 ~a~vi~ep~~~~---~G~i-~~~~~~l~~l~~l~~~~g~llI 284 (476)
...|++.|...+ .|.+ ....+|-+.++++|+++|+.+|
T Consensus 126 ~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 126 AKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp CEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 456777775432 2332 3445778999999999998776
No 261
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=25.84 E-value=38 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 011856 269 LNAIRRITKENGALLIFDEVMT 290 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~ 290 (476)
-.+|+++++++|+.++.|.--.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCeecCHHHH
Confidence 5789999999999999997553
No 262
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=25.21 E-value=1.2e+02 Score=26.60 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=29.4
Q ss_pred CeEEEEEcccCCC----------CCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 246 EIAAIILEPVVGN----------SGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 246 ~~a~vi~ep~~~~----------~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
..++||||-++.. .|.... +.++.+++++||+.+|.
T Consensus 167 ~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 167 RPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 5788999877541 577888 88999999999999884
No 263
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=25.07 E-value=1e+02 Score=30.04 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccC
Q 011856 266 PDFLNAIRRITKENGALLIFDEVMTG 291 (476)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g 291 (476)
++-+++|.+-|+++|+-||+|=|+..
T Consensus 76 ~~df~~lv~~aH~~Gi~VilD~V~NH 101 (496)
T 4gqr_A 76 EDEFRNMVTRCNNVGVRIYVDAVINH 101 (496)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCc
Confidence 34599999999999999999999844
No 264
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=24.66 E-value=53 Score=29.13 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCCeEEEEE-cccCC---CCCcccCCHHH---HHHHHHHHHHhCCEEEEec-cccCccccccchhhccC
Q 011856 233 VSALENLFENNKGEIAAIIL-EPVVG---NSGFIAPKPDF---LNAIRRITKENGALLIFDE-VMTGFRLAYGGAQEYFG 304 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~-ep~~~---~~G~i~~~~~~---l~~l~~l~~~~g~llI~DE-v~~g~r~g~~~~~~~~g 304 (476)
++.++++++. .+..|.+ +...+ -.|. .+..++ .++|+++|++||+.||+++ +..-...|..+. |++
T Consensus 46 ~~~~~~al~~---Gv~~vqlR~K~~~~~~~~~~-l~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA~~~gAdGV--HLg 119 (243)
T 3o63_A 46 AQFAEAALAG---GVDIIQLRDKGSPGELRFGP-LQARDELAACEILADAAHRYGALFAVNDRADIARAAGADVL--HLG 119 (243)
T ss_dssp HHHHHHHHHT---TCSEEEECCTTCHHHHHHCS-CCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSEE--EEC
T ss_pred HHHHHHHHHC---CCCEEEEccCCCCccccccC-CCHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHHHHhCCCEE--Eec
Confidence 5777888874 3556666 54311 0010 123333 4778999999999888854 332112222111 233
Q ss_pred CCC-chhhhhhhcCCCCcEEEEEecH-HHHHhh
Q 011856 305 VTP-DLTTLGKIIGGGLPVGAYGGRR-DIMEMV 335 (476)
Q Consensus 305 ~~p-Di~t~sK~lg~G~~iG~~~~~~-~i~~~l 335 (476)
... +....-+.++.+..+|.-+.+. ++.+..
T Consensus 120 ~~dl~~~~~r~~~~~~~~iG~S~ht~~Ea~~A~ 152 (243)
T 3o63_A 120 QRDLPVNVARQILAPDTLIGRSTHDPDQVAAAA 152 (243)
T ss_dssp TTSSCHHHHHHHSCTTCEEEEEECSHHHHHHHH
T ss_pred CCcCCHHHHHHhhCCCCEEEEeCCCHHHHHHHh
Confidence 211 1223334455566788776554 444433
No 265
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=24.34 E-value=2.9e+02 Score=24.90 Aligned_cols=101 Identities=10% Similarity=0.035 Sum_probs=56.7
Q ss_pred CCCeEEEeCCHHHHHHHHHHHHHhccCCceEEEEeCCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeeccCCCH
Q 011856 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (476)
Q Consensus 154 ~~e~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (476)
+.+.++.+.+.-+....++.+++.+.+.+..+...-+.|.+.... ....++
T Consensus 30 gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~-----------------------------~~~~~~ 80 (287)
T 3rcm_A 30 GVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKA-----------------------------WDTDSE 80 (287)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGG-----------------------------CCTTHH
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEECcCcccc-----------------------------CCHHHH
Confidence 456677777777778888888877754222233333555532100 001247
Q ss_pred HHHHHHHhcCCCCeEEEE---EcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011856 234 SALENLFENNKGEIAAII---LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (476)
Q Consensus 234 ~~le~~l~~~~~~~a~vi---~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (476)
+.|+++++. +++.+|= ++-... ........+.+++..++|+++|.+|++=
T Consensus 81 ~~l~~l~~~--~~vvaIGEiGLD~~~~-~~~~~~Q~~~F~~ql~lA~e~~lPv~iH 133 (287)
T 3rcm_A 81 RQLRLLLSE--PRVRAVGECGLDFNRD-FSPRPLQEKALEAQLTLAAQLRLPVFLH 133 (287)
T ss_dssp HHHHHHHTS--TTEEEEEEEEEETTTC-SSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHhcC--CCeEEEEEeeeCCCcc-cCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 888888764 2444431 222211 1111123567888999999999998863
No 266
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=24.16 E-value=1.9e+02 Score=20.38 Aligned_cols=45 Identities=7% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (476)
.....+.+++. +...|++-..- +++....|..+|+++++.++.-.
T Consensus 16 ~~~v~kai~~g--kaklViiA~D~--------~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRG--SVKEVVVAKDA--------DPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTT--CEEEEEEETTS--------CHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcC--CeeEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEEC
Confidence 45666777653 56666664331 22568999999999999988654
No 267
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=23.07 E-value=59 Score=28.91 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccC-------------CHHHHHHHHHHHHHhCCEEEE
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAP-------------KPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~-------------~~~~l~~l~~l~~~~g~llI~ 285 (476)
++.+++++++....-+-+|+-|-...+|.... +..+++.|.++++++++.+++
T Consensus 20 ~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~ 85 (262)
T 3ivz_A 20 YSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVA 85 (262)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEE
Confidence 45555555421112233566665555555432 225689999999999998875
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=22.30 E-value=3.1e+02 Score=25.41 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=27.4
Q ss_pred CCeEEEEEcccCCCCC--cccC----------C-----HHHHHHHHHHHHHhCCEEE-Eeccc
Q 011856 245 GEIAAIILEPVVGNSG--FIAP----------K-----PDFLNAIRRITKENGALLI-FDEVM 289 (476)
Q Consensus 245 ~~~a~vi~ep~~~~~G--~i~~----------~-----~~~l~~l~~l~~~~g~llI-~DEv~ 289 (476)
..+..||+++++.... .+.. . ..+|.+|..+++++|+.+| +..++
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 3688999999876521 0100 0 1346667778999999765 45554
No 269
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=22.07 E-value=4.4e+02 Score=24.58 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCCC-HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEe
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAPC-LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 188 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~~-~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (476)
.+.++.+++.+..+.|.. .+.++ +...+..+.+.+.++..-.+.+ .|+|.. .+.++++++.+. -.+ .++
T Consensus 145 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~-~~~a~~~~~~l~--~~i-~iE 220 (378)
T 2qdd_A 145 TPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWT-PAIAVEVLNSVR--ARD-WIE 220 (378)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCC-HHHHHHHHTSCC--CCC-EEE
T ss_pred CHHHHHHHHHHHHHHhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCC-HHHHHHHHHHhC--CCc-EEE
Confidence 345566666666665421 12212 3344666667676642123433 455543 456777776664 456 666
Q ss_pred CCCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeec-cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHH
Q 011856 189 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (476)
Q Consensus 189 ~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (476)
..+. ...........- . .| +..- ...+.+++++++++. ....|.+.+..- |.+..
T Consensus 221 qP~~-d~~~~~~l~~~~--~--iP------------I~~dE~~~~~~~~~~~i~~~--~~d~v~ik~~~~--GGi~~--- 276 (378)
T 2qdd_A 221 QPCQ-TLDQCAHVARRV--A--NP------------IMLDECLHEFSDHLAAWSRG--ACEGVKIKPNRV--GGLTR--- 276 (378)
T ss_dssp CCSS-SHHHHHHHHTTC--C--SC------------EEECTTCCSHHHHHHHHHHT--CCSEEEECHHHH--TSHHH---
T ss_pred cCCC-CHHHHHHHHHhC--C--CC------------EEECCCcCCHHHHHHHHHhC--CCCEEEeccccc--CCHHH---
Confidence 6665 333332222210 0 11 0000 112688899998753 455677776542 33444
Q ss_pred HHHHHHHHHHHhCCEEEEe
Q 011856 268 FLNAIRRITKENGALLIFD 286 (476)
Q Consensus 268 ~l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.++.=
T Consensus 277 -~~~i~~~A~~~g~~~~~~ 294 (378)
T 2qdd_A 277 -ARQIRDFGVSVGWQMHIE 294 (378)
T ss_dssp -HHHHHHHHHHHTCEEEEC
T ss_pred -HHHHHHHHHHcCCeEEec
Confidence 688999999999987764
No 270
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=21.95 E-value=4.7e+02 Score=24.52 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=75.0
Q ss_pred CcHHHHHHHHHHHHh-cCC-----CCC-CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEE
Q 011856 116 ADDQVLAALGETMKK-GTS-----FGA-PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKF 187 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~-~~~-----~~~-~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (476)
.++++.+.+.+.++. |.. .+. ..+...+..+.+.+.++..-.+.+ .|+|.. .+.|+++++.+..-+ +..+
T Consensus 148 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~-~~~A~~~~~~l~~~~-i~~i 225 (383)
T 3i4k_A 148 PLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWD-RRTALHYLPILAEAG-VELF 225 (383)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSC-HHHHHHHHHHHHHTT-CCEE
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCC-HHHHHHHHHHHHhcC-CCEE
Confidence 455666666666665 531 122 223344566667777753223444 455544 456666665554333 4444
Q ss_pred eCCCCCCch-hHHhhc---CCCCccCCCCCCCCCCCCCCCceeeccCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCccc
Q 011856 188 EGCYHGHAD-PFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 263 (476)
Q Consensus 188 ~~~yhg~~~-~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~ 263 (476)
+..+..... ...... +.++.. .+. ..+.++++++++.. ....|.+.+.. .|.+.
T Consensus 226 EqP~~~~d~~~~~~l~~~~~iPIa~-----dE~-------------~~~~~~~~~~i~~~--~~d~v~~k~~~--~GGit 283 (383)
T 3i4k_A 226 EQPTPADDLETLREITRRTNVSVMA-----DES-------------VWTPAEALAVVKAQ--AADVIALKTTK--HGGLL 283 (383)
T ss_dssp ESCSCTTCHHHHHHHHHHHCCEEEE-----STT-------------CSSHHHHHHHHHHT--CCSEEEECTTT--TTSHH
T ss_pred ECCCChhhHHHHHHHHhhCCCCEEe-----cCc-------------cCCHHHHHHHHHcC--CCCEEEEcccc--cCCHH
Confidence 444433211 111111 111100 000 12688888888753 45566777643 34455
Q ss_pred CCHHHHHHHHHHHHHhCCEEEE
Q 011856 264 PKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~ 285 (476)
. ..++.++|+++|+.++.
T Consensus 284 ~----~~~ia~~A~~~gi~~~~ 301 (383)
T 3i4k_A 284 E----SKKIAAIAEAGGLACHG 301 (383)
T ss_dssp H----HHHHHHHHHHTTCEEEE
T ss_pred H----HHHHHHHHHHcCCeEEe
Confidence 5 78899999999998764
No 271
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=20.38 E-value=5.3e+02 Score=24.05 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=77.9
Q ss_pred CcHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHHHhccCCceEEEEeC
Q 011856 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (476)
Q Consensus 116 ~~p~v~~a~~~~l~~~~~-----~~~~~~~~~~la~~l~~~~~~~e~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (476)
...++.+++.+..+.|.. .+...+...+..+.+.+.++..-.+.+ .|+|.. .+.++++++.+..- .+ .++.
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~-~~~a~~~~~~l~~~-~i-~iE~ 221 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWR-VDNAIRLARATRDL-DY-ILEQ 221 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSC-HHHHHHHHHHTTTS-CC-EEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCC-HHHHHHHHHHHHhC-Ce-EEeC
Confidence 456677777776666421 121223345566666666642223333 455543 45566666665443 35 5666
Q ss_pred CCCCCchhHHhhcCCCCccCCCCCCCCCCCCCCCceeec-cCCCHHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHH
Q 011856 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (476)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (476)
.+. ...........- . .| +... ...+.++++++++.. ....|.+.+.. .|.+..
T Consensus 222 P~~-~~~~~~~l~~~~--~--iP------------I~~de~i~~~~~~~~~i~~~--~~d~v~ik~~~--~GGit~---- 276 (379)
T 2rdx_A 222 PCR-SYEECQQVRRVA--D--QP------------MKLDECVTGLHMAQRIVADR--GAEICCLKISN--LGGLSK---- 276 (379)
T ss_dssp CSS-SHHHHHHHHTTC--C--SC------------EEECTTCCSHHHHHHHHHHT--CCSEEEEETTT--TTSHHH----
T ss_pred CcC-CHHHHHHHHhhC--C--CC------------EEEeCCcCCHHHHHHHHHcC--CCCEEEEeccc--cCCHHH----
Confidence 665 333332222210 0 11 1110 123688999999863 45567777654 244444
Q ss_pred HHHHHHHHHHhCCEEEEe
Q 011856 269 LNAIRRITKENGALLIFD 286 (476)
Q Consensus 269 l~~l~~l~~~~g~llI~D 286 (476)
..++.++|+++|+.++.=
T Consensus 277 ~~~i~~~A~~~g~~~~~~ 294 (379)
T 2rdx_A 277 ARRTRDFLIDNRMPVVAE 294 (379)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCeEEEe
Confidence 788999999999987764
No 272
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=20.37 E-value=1.7e+02 Score=22.45 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011856 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (476)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (476)
.....+.+++. ...+||+-..- ++.++...|..+|++++++++.
T Consensus 25 ~~~v~kai~~g--kakLViiA~D~-------~~~~~~~~l~~lc~~~~VP~~~ 68 (121)
T 2lbw_A 25 VKEVVKALRKG--EKGLVVIAGDI-------WPADVISHIPVLCEDHSVPYIF 68 (121)
T ss_dssp HHHHHHHHHHS--CCCEEEECTTC-------SCTTHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHcC--CceEEEEeCCC-------CHHHHHHHHHHHHHhcCCcEEE
Confidence 45566667653 45566665432 2234478899999999999875
No 273
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=20.23 E-value=69 Score=29.22 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCEEEEec
Q 011856 267 DFLNAIRRITKENGALLIFDE 287 (476)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DE 287 (476)
+.++++.+.|+++|+.+|+|=
T Consensus 80 ~~ld~~v~~a~~~Gi~Vild~ 100 (303)
T 7a3h_A 80 EKVKEAVEAAIDLDIYVIIDW 100 (303)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 557888999999999999884
No 274
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=20.14 E-value=1e+02 Score=24.56 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=32.3
Q ss_pred CHHHHHHHHhcCCCCeEEEEE-cccCCCCCcccCCHHHHHHH-HHHHHHhCCE-EEEeccccC
Q 011856 232 DVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAI-RRITKENGAL-LIFDEVMTG 291 (476)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~-ep~~~~~G~i~~~~~~l~~l-~~l~~~~g~l-lI~DEv~~g 291 (476)
+++.|+++++++ ++..|++ .|.+- .|...+.....++. .+|.+++++. ..+||=+|-
T Consensus 41 ~~~~l~~li~e~--~v~~iVvGlP~~m-dGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlTT 100 (138)
T 1nu0_A 41 DWNIIERLLKEW--QPDEIIVGLPLNM-DGTEQPLTARARKFANRIHGRFGVEVKLHDERLST 100 (138)
T ss_dssp CHHHHHHHHHHH--CCSEEEEEEEECT-TSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_pred HHHHHHHHHHHc--CCCEEEEecccCC-CcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCH
Confidence 689999999876 4555555 56543 34433322212222 2333446764 558998863
Done!