BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011857
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 284 PNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSL 343
P V A + + + M P + A +RV ++LG + KGA A V ++T
Sbjct: 267 PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLA 326
Query: 344 IGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQ 403
LL +++ ++IAL++T ++V++ +L + A ++++Q V +G G
Sbjct: 327 TACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDM 386
Query: 404 SYVAYVNLGTYYFVGVPLGFLMG---WVFHQ--GVKGIWLGMIFGGTA 446
+ + + +Y+ +G+P G+++G W+ Q G KG WLG I G +A
Sbjct: 387 TAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSA 434
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 81/185 (43%), Gaps = 2/185 (1%)
Query: 257 KLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGV 316
K+ A G+ LE + ++ + P + V A + ++++G MIP + + V
Sbjct: 245 KIGAPIGLSYFLEASAFSFIVFLIA--PFGEDYVAAQQVGISLSGILYMIPQSVGSAGTV 302
Query: 317 RVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNEL 376
R+ LG A++ + VS+V+ ++ + L ++++ +A ++ +L + +
Sbjct: 303 RIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTV 362
Query: 377 SILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGI 436
+ + Q + S G +++ ++ G+ G+L+ + F G+ G
Sbjct: 363 LLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGF 422
Query: 437 WLGMI 441
W +I
Sbjct: 423 WTALI 427
>pdb|1OG3|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 Mutant E189i In
Complex With Nad
Length = 226
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 5 NELEEIEAPLLEDDSADQALARKVWVESKKLWHIVGPS 42
N++EE LL++D A + W E+KK W+ + PS
Sbjct: 23 NKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPS 60
>pdb|1OG4|A Chain A, Crystal Structure Of The Eucaryotic
Mono-adp-ribosyltransferase Art2.2 Mutant E189a In
Complex With Nadh
Length = 226
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 5 NELEEIEAPLLEDDSADQALARKVWVESKKLWHIVGPS 42
N++EE LL++D A + W E+KK W+ + PS
Sbjct: 23 NKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPS 60
>pdb|1GXY|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A
(P21)
pdb|1GXY|B Chain B, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A
(P21)
pdb|1GXZ|A Chain A, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GXZ|B Chain B, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GY0|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form C
(P3121)
pdb|1OG1|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 In Complex With Tad
Length = 226
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 5 NELEEIEAPLLEDDSADQALARKVWVESKKLWHIVGPS 42
N++EE LL++D A + W E+KK W+ + PS
Sbjct: 23 NKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPS 60
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 247 EAFSGLWEFVKLSAASGVM---LCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWE 303
F +WE + GV+ + + + + L+T PNP+LA + CM+++ W
Sbjct: 238 RTFEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLT---PNPELAETIRTKCMSLSNWY 294
Query: 304 IMIPFAF 310
+IP F
Sbjct: 295 GLIPALF 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,952,350
Number of Sequences: 62578
Number of extensions: 417483
Number of successful extensions: 894
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 7
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)