Query 011857
Match_columns 476
No_of_seqs 247 out of 2070
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 7E-57 1.5E-61 440.4 54.3 437 28-469 12-453 (455)
2 PRK10189 MATE family multidrug 100.0 1.2E-52 2.7E-57 414.5 54.8 433 30-466 26-469 (478)
3 PRK00187 multidrug efflux prot 100.0 6.1E-51 1.3E-55 402.5 56.2 427 29-459 6-444 (464)
4 PRK01766 multidrug efflux prot 100.0 5.6E-49 1.2E-53 390.1 55.0 435 25-463 4-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 3.4E-49 7.4E-54 389.6 52.3 427 29-463 8-439 (453)
6 PRK10367 DNA-damage-inducible 100.0 7.7E-49 1.7E-53 383.9 54.2 423 29-463 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 2.8E-37 6E-42 311.1 51.8 413 35-459 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 8.7E-37 1.9E-41 306.5 48.2 414 36-459 2-434 (488)
9 KOG1347 Uncharacterized membra 100.0 1.6E-37 3.4E-42 301.2 34.3 449 24-474 19-467 (473)
10 TIGR00797 matE putative efflux 100.0 4.1E-36 8.8E-41 287.6 42.9 337 41-380 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 5E-35 1.1E-39 286.8 46.2 403 35-457 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 8.7E-30 1.9E-34 249.8 50.4 386 63-459 5-403 (451)
13 PRK10459 colanic acid exporter 100.0 1.2E-28 2.5E-33 247.4 47.8 398 32-458 4-404 (492)
14 COG0728 MviN Uncharacterized m 100.0 9.7E-28 2.1E-32 230.8 51.1 419 33-459 7-437 (518)
15 COG2244 RfbX Membrane protein 100.0 1.5E-26 3.2E-31 231.7 41.7 392 30-443 3-396 (480)
16 PRK10367 DNA-damage-inducible 99.9 1E-20 2.3E-25 185.6 29.5 207 249-458 5-211 (441)
17 COG0534 NorM Na+-driven multid 99.9 7.8E-21 1.7E-25 186.5 27.9 208 249-460 13-222 (455)
18 PRK00187 multidrug efflux prot 99.9 1.2E-20 2.7E-25 186.8 27.8 205 249-458 6-214 (464)
19 PRK10189 MATE family multidrug 99.9 2.2E-20 4.8E-25 185.1 27.8 204 250-457 26-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 2.4E-20 5.2E-25 184.4 26.6 208 249-459 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 5.2E-20 1.1E-24 182.9 28.5 207 249-459 8-218 (456)
22 PF01943 Polysacc_synt: Polysa 99.8 1.8E-16 3.9E-21 146.6 33.2 271 35-321 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 1.1E-16 2.4E-21 161.5 31.8 206 28-235 218-428 (502)
24 TIGR00797 matE putative efflux 99.8 2E-17 4.4E-22 158.3 24.7 194 261-458 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 1.9E-18 4.2E-23 146.4 9.8 162 261-424 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 7.9E-15 1.7E-19 144.3 30.0 205 29-235 194-403 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 2.4E-15 5.3E-20 151.2 24.8 202 28-234 220-433 (488)
28 PF01554 MatE: MatE; InterPro 99.7 1.5E-17 3.2E-22 141.0 6.5 160 41-201 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 9.2E-13 2E-17 127.8 35.0 204 30-235 229-437 (518)
30 PRK10459 colanic acid exporter 99.7 3E-13 6.5E-18 136.0 33.0 200 29-234 203-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 6.9E-13 1.5E-17 121.0 30.7 247 52-321 3-251 (251)
32 PRK15099 O-antigen translocase 99.6 1.8E-13 3.9E-18 134.4 26.0 200 28-234 210-411 (416)
33 COG2244 RfbX Membrane protein 99.5 2.2E-12 4.8E-17 129.4 25.8 185 28-217 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.4 3.9E-09 8.4E-14 104.9 33.7 420 36-459 4-470 (549)
35 KOG1347 Uncharacterized membra 99.2 8.1E-10 1.8E-14 108.2 20.4 206 249-459 24-230 (473)
36 KOG2864 Nuclear division RFT1 99.2 2.9E-07 6.3E-12 85.7 34.6 414 31-458 6-448 (530)
37 PF07260 ANKH: Progressive ank 99.0 1.8E-06 3.9E-11 77.2 29.2 316 29-353 7-343 (345)
38 PF04506 Rft-1: Rft protein; 98.5 2.8E-05 6.1E-10 77.7 21.6 204 31-235 251-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 2.9E-06 6.3E-11 70.1 10.1 79 377-459 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.4 6E-05 1.3E-09 62.2 17.8 79 155-235 2-80 (146)
41 COG4267 Predicted membrane pro 98.3 0.0025 5.4E-08 58.6 32.8 320 81-426 72-413 (467)
42 PF01943 Polysacc_synt: Polysa 98.3 0.00026 5.7E-09 65.0 21.2 186 258-458 4-190 (273)
43 PF13440 Polysacc_synt_3: Poly 97.9 0.0042 9.1E-08 56.3 22.2 165 276-458 7-172 (251)
44 PF07260 ANKH: Progressive ank 97.6 0.044 9.6E-07 49.7 22.6 167 249-426 7-180 (345)
45 KOG2864 Nuclear division RFT1 97.6 0.039 8.4E-07 52.5 22.4 203 31-235 237-449 (530)
46 PF05975 EcsB: Bacterial ABC t 90.3 19 0.0004 35.0 16.9 39 326-364 89-127 (386)
47 COG4267 Predicted membrane pro 86.8 29 0.00063 33.0 18.4 136 305-458 75-210 (467)
48 PF04505 Dispanin: Interferon- 60.1 55 0.0012 23.6 6.6 41 307-347 33-73 (82)
49 PF11457 DUF3021: Protein of u 42.6 1.7E+02 0.0037 23.2 16.2 18 454-471 118-135 (136)
50 PF03904 DUF334: Domain of unk 32.3 2.8E+02 0.0061 24.4 7.5 40 104-143 141-180 (230)
51 PF04995 CcmD: Heme exporter p 30.8 1.4E+02 0.003 18.7 4.4 35 436-471 7-42 (46)
52 PRK10739 putative antibiotic t 26.9 4.2E+02 0.009 22.9 8.9 58 314-375 20-77 (197)
53 PTZ00370 STEVOR; Provisional 26.9 1.4E+02 0.003 27.3 5.0 36 429-467 255-292 (296)
54 PF04235 DUF418: Protein of un 25.8 3.8E+02 0.0081 22.0 12.4 28 326-353 9-36 (163)
55 PRK09546 zntB zinc transporter 23.9 2.4E+02 0.0053 26.5 6.6 50 408-461 266-323 (324)
56 KOG2532 Permease of the major 23.8 7.5E+02 0.016 24.8 10.4 84 372-457 132-217 (466)
57 TIGR00383 corA magnesium Mg(2+ 23.6 2.8E+02 0.006 25.9 6.9 57 401-461 253-317 (318)
58 PF04505 Dispanin: Interferon- 21.8 3.1E+02 0.0068 19.7 5.8 34 95-128 42-75 (82)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=7e-57 Score=440.39 Aligned_cols=437 Identities=25% Similarity=0.370 Sum_probs=412.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857 28 VWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY 107 (476)
Q Consensus 28 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 107 (476)
.++..|+++++++|++++++.+.+++++|+.++||+|++++++.+++.++..+ ...+..|++.+.++.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 57799999999999999999999999999999999999999999999999999 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011857 108 MLGVYMQRSWIVLFTCCVLLL-PLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAW 186 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (476)
++++..++++.+.++.+++.. +.+.+.++++.+++.++|+.+.+..|+++..++.++..++....+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 999999999999999997776 5689999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCCcHHhHhcHHHHHHHHhHH
Q 011857 187 VSLVALLVHIFVSWLFVYK-MQ-LGLIATIHILNFSWWVLVFGLFGYVVFGG--CPLTWTGFSAEAFSGLWEFVKLSAAS 262 (476)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ 262 (476)
.+.+++++|+++|++|++. ++ +|+.|+++||++++.+..++...++++++ ......+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999997 57 99999999999999999999999998864 23332333334468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 011857 263 GVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSS 342 (476)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
++++..+...+...+.+++++| ++++|+|+++.++.++..+++.+++++..|.+++++|+||+|++++..+.+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHH
Q 011857 343 LIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLG 422 (476)
Q Consensus 343 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 422 (476)
.+++..++.++++++++..+|++|+|+.+.+..++.+..+..++++.+.+..+.+++.||+|.+++.++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH
Q 011857 423 FLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKAS 469 (476)
Q Consensus 423 ~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (476)
+++..+. +|..|+|++.. .++.+..++..+++++++|+++..+..
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAAA 453 (455)
T ss_pred HHHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 9999433 99999999999 999999999999999998988755543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.2e-52 Score=414.45 Aligned_cols=433 Identities=15% Similarity=0.183 Sum_probs=398.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 011857 30 VESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYML 109 (476)
Q Consensus 30 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 109 (476)
+..|++++.++|..++++...+.+.+|+.+++++|++++++++++.++..+ ...+..|++++.++.++|++|++|++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 349999999999999999999999999999999999999999999999988 7889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011857 110 GVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFG--QPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAW 186 (476)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (476)
++..+.++.+....+++..+ .+.+.++++.++. .|+|+.+.+..|+++..++.++..+....++.+|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 99999999999999988875 5778889998884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhc---ccccccCC-CcHHhHhcHHHHHHH
Q 011857 187 VSLVALLVHIFVSWLFVYKM----QLGLIATIHILNFSWWVLVFGLFGYVVFG---GCPLTWTG-FSAEAFSGLWEFVKL 258 (476)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~ 258 (476)
.++...++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ ..+.++++ +++.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999753 78999999999999999888776665543 12222222 112245789999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 011857 259 SAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSV 338 (476)
Q Consensus 259 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 338 (476)
|.|.+++.........+.+.+++++| +.++|+|+++.++..+..++..+++++..|.+++++|+||.+++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998888888889988 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhh
Q 011857 339 VTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVG 418 (476)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 418 (476)
++++.+++..+++++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.+++.||++.+++.++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 011857 419 VPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAE 466 (476)
Q Consensus 419 i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~ 466 (476)
+|+.+++....++|+.|+|++.. +++.+..++..+++++++|++...
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~-~~~~~~~~~~~~r~~~~~W~~~~~ 469 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMF-LDWAVRGVLFYWRMVSGRWLWKYP 469 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHcCccccCCC
Confidence 99999998777899999999999 999999999999999999998443
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=6.1e-51 Score=402.49 Aligned_cols=427 Identities=21% Similarity=0.251 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYM 108 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 108 (476)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+ ...+..|++++.++.++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 5678999999999999999999999999999999999999999999999998 777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHH
Q 011857 109 LGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVS 188 (476)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 188 (476)
+++..+.++.+..+.+++..++..+.++++.+++.|+|+.+.+..|+++..++.++..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999888777655577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcc--cccccC-CCcHHhHhcHHHHHHHHhH
Q 011857 189 LVALLVHIFVSWLFVYKM----QLGLIATIHILNFSWWVLVFGLFGYVVFGG--CPLTWT-GFSAEAFSGLWEFVKLSAA 261 (476)
Q Consensus 189 ~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~p 261 (476)
.++.++|+++++++++.. ++|+.|+++|+.+++....+...+++++++ .+.+.+ +..+.+++.+|++++.|+|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999742 479999999999999888777666666542 112211 1122335678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 011857 262 SGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTS 341 (476)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (476)
.++++..+.....+++.+++++| +++++++++++++..+..++..+++++..+.+++++|+||+|++++..+++..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcCC--ch---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHH
Q 011857 342 SLIGLFFWLLIMIYHKEIALIFTS--SE---VILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYF 416 (476)
Q Consensus 342 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 416 (476)
+.++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||+|.+++.++.+.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6788999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 417 VGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 417 ~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+++|+.+++.+.+++|+.|+|+++. +++.+..++...+++.+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~-i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLA-LGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999877899999999999 99999988777666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=5.6e-49 Score=390.07 Aligned_cols=435 Identities=20% Similarity=0.358 Sum_probs=397.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 011857 25 ARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAK 104 (476)
Q Consensus 25 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~ 104 (476)
+++.++.+|++++.++|..++++...+.+.+|+.+++++|++++++++.+.++..+ ...+..|++.+..+.++|++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 34457789999999999999999999999999999999999999999999998776 67788999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhH
Q 011857 105 KYYMLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMA 183 (476)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (476)
|+++.++..+.++.+..+.++++.+ .+.+.+++..+++.+++..+.+..|+++..++.++..+....++++|+.|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 9999999999999999999988775 467778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----cCCccchHHHHHHHHHHHHHHHHHHHHHhcc-cc-c-ccCCCcHHhHhcHHHHH
Q 011857 184 VAWVSLVALLVHIFVSWLFVYK----MQLGLIATIHILNFSWWVLVFGLFGYVVFGG-CP-L-TWTGFSAEAFSGLWEFV 256 (476)
Q Consensus 184 ~~~~~~~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~ 256 (476)
+++.++++.++|+++++++++. .++|+.|+++++.+++++..++..++.++++ .+ . .+.++...+++..|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999863 2579999999999999999998887776542 11 1 11122223356789999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHH
Q 011857 257 KLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIV 336 (476)
Q Consensus 257 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 336 (476)
+.++|..+++..+...+.++..+++++| ++++++++++.++.++..+++.+++++..+.+++++|+||++++++..+.
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~ 320 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYI 320 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999999999988 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHH
Q 011857 337 SVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYF 416 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 416 (476)
+.++++.++++.++++..+++++..+|++|+++.+.+..++++..++.++++++.+..+++++.||++.+++.++.+.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 400 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 400 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 011857 417 VGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDK 463 (476)
Q Consensus 417 ~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~ 463 (476)
+++|+.+++...+.+|+.|+|+++. +++.+..++...++++.+|+.
T Consensus 401 ~~i~~~~~l~~~~~~G~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 401 LGLPLGYILALTDPMGPFGFWIGLI-IGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777899999999999 999999998888887766655
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.4e-49 Score=389.56 Aligned_cols=427 Identities=19% Similarity=0.217 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHL-GDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY 107 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 107 (476)
++..|++++.+.|..++++...+++++|+.+++|+ |++++++++++.++..+ ...+..+++.+.++.++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 46789999999999999999999999999999995 99999999999999998 67788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011857 108 MLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAW 186 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (476)
++++..++++.+..+.+++..+ ...+.++++.+++.+++..+.+.+|+++..++.++..+.....+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999988875 578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccc--cccCCCcHHhHhcHHHHHHHHhHHHH
Q 011857 187 VSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCP--LTWTGFSAEAFSGLWEFVKLSAASGV 264 (476)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (476)
.++.+.++|+++++++++.+++|+.|+++++.+++.+..++..++.++++.+ .+.+.++ .+++.+|++++.|.|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELR-FNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCC-cCHHHHHHHHHhChhHHH
Confidence 9999999999999999988889999999999999999999877777654222 2222222 235678999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 011857 265 MLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLI 344 (476)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
++..+.+...+.+.+++++|+ +.++|+++++.++..+..++..+++++..|.+++++|+||+|++++..+.+.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999998888888884 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcCC-chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHH
Q 011857 345 GLFFWLLIMIYHKEIALIFTS-SEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGF 423 (476)
Q Consensus 345 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 423 (476)
+++.++++..+++++..+|++ |+|+.+.+..++++..++.+++++..+..+++++.||++.+++.+... +++++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 788999999999999999999999999999999999999999999877 578999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 011857 424 LMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDK 463 (476)
Q Consensus 424 ~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~ 463 (476)
++. +.+|+.|+|+++. +++.+..++...++++ +|+|
T Consensus 404 ll~--~~~G~~Gvw~a~~-~~~~~~~~~~~~~~~~-~~~~ 439 (453)
T PRK09575 404 ILP--KWLGVDGVWLAMP-LSNIALSLVVAPMLWR-DVKK 439 (453)
T ss_pred HHH--HHHCcchHhhHHH-HHHHHHHHHHHHHHHH-HHHH
Confidence 987 5589999999999 9999988877766654 4443
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=7.7e-49 Score=383.90 Aligned_cols=423 Identities=17% Similarity=0.166 Sum_probs=371.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHL-GDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY 107 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 107 (476)
++..|+++++++|..++++...+.+.+|+.+++|+ |++++++++++.++..+ ...+..+++.+.++.+||++|++|++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45688999999999999999999999999999998 77899999999999998 78888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011857 108 MLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAW 186 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (476)
++++..++++.+.++++++..+ ...+.++++.+++.|+|+.+.+.+|+++..++.++..+....++.+|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 9999999999999999987775 467788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-ccc-cccCCCcHHhHhcHHHHHHHHhHHHH
Q 011857 187 VSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG-GCP-LTWTGFSAEAFSGLWEFVKLSAASGV 264 (476)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (476)
.++++.++|+++++++++.+++|+.|+++|+.+++.+..++..++++++ +.+ .+++.++.+.++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 9999999999999999998889999999999999999988877776653 111 11111221112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 011857 265 MLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLI 344 (476)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
++..+...+.+.+.+++++| ++++|+|+++.++.++..++..+++++..|.+++++|+||.|++|+..+++.++++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC---cchhhHHHHHHHHHHhhHHH
Q 011857 345 GLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSG---WQSYVAYVNLGTYYFVGVPL 421 (476)
Q Consensus 345 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~l 421 (476)
+...+++++.+++++..+|++|+|+.+.+..++++..+..+......+...++++.+ |+|.+++.+..+.|+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~----- 396 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFAL----- 396 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999998876443334444444455555 499999999888754
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHH
Q 011857 422 GFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDK 463 (476)
Q Consensus 422 ~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~ 463 (476)
.++.. +.+|+.|+|++.. +++.+..++..++++++ |++
T Consensus 397 ~~~~~--~~~g~~Gvw~a~~-~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 397 TLLTL--PWLGNHGLWLALT-VFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHH--HHcCchHHHHHHH-HHHHHHHHHHHHHHHHH-Hhc
Confidence 22222 4689999999999 99999999888776554 755
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.8e-37 Score=311.10 Aligned_cols=413 Identities=14% Similarity=0.084 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHH
Q 011857 35 LWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLEL-AAISIANNVIVAFNFGLL-LGMASALETLCGQAFGAKKYYMLGV 111 (476)
Q Consensus 35 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~-g~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~ 111 (476)
+.|.+....++++++.+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788999999999999999999999999 799999 899999999877333333 578888777776654322 57777
Q ss_pred HHHHHHHHHHHHH-HHHH-HHHHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011857 112 YMQRSWIVLFTCC-VLLL-PLYLFASPLLKLF--GQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWV 187 (476)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (476)
.+.++.......+ ++.. +.+.+.+++..++ +.+++..+.+.+|++++.++.++..+....++.+|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555444 3444 4566777777777 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHH--HHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHH
Q 011857 188 SLVALLVHIFVSWLFVYKMQLGLIATI--HILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVM 265 (476)
Q Consensus 188 ~~~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (476)
++..++++++..+++ ..++|..|++ ++++++..+..++.+.+.+|++.+.+. +++. +++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFNF-RDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCCC-CChhHHHHHHHHHHHHHH
Confidence 999888776644333 3567999988 999999999888877766654322211 2221 246789999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 011857 266 LCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIM-IPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLI 344 (476)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
+....+...+|+.+.+.++ +.++++|+.+.++.++... +..+++++..|.+++++++||+++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877666 6688999999999988764 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcCC----chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHH
Q 011857 345 GLFFWLLIMIYHKEIALIFTS----SEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVP 420 (476)
Q Consensus 345 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 420 (476)
++|.++++.++++++..++.+ |+|.++.+..++++++++.++.+++.+..+.+++.||+|.+++.+.... +++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHH
Confidence 999999999999999999976 5577889999999999999999999999999999999999999999986 88999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 421 LGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 421 l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+++++. +.+|..|+|+++. +++.+..++..++.+|+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~-i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATS-AASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999998 7899999999999 99999998887777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=8.7e-37 Score=306.50 Aligned_cols=414 Identities=12% Similarity=0.118 Sum_probs=347.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHH
Q 011857 36 WHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQ 114 (476)
Q Consensus 36 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~ 114 (476)
.|.+.|..++++...+.+++|+.+++| +|++++|+++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 6999999999999999985555667999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 011857 115 RSWIVLFTCCVLLLPL-YLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALL 193 (476)
Q Consensus 115 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (476)
+++.+..+.+++..++ ..+.+++...+..+++. ..++++..+..++..+....++.+|+.+|++..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999887754 56666666666555543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCccchHHHHHHHHHHHHHHHHHHHHHhc-ccc--cccCCCcHHhHhcHHHHHHHHhHHHHH
Q 011857 194 VHIFVSWLFVYK-----MQLGLIATIHILNFSWWVLVFGLFGYVVFG-GCP--LTWTGFSAEAFSGLWEFVKLSAASGVM 265 (476)
Q Consensus 194 ~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (476)
+++.++..++.. .+.|+.|+++++.++..+..++..++.+++ +.+ .++.+....+++.+|+++++|.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776665542 234678888999999988888876665543 212 212222223356889999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC-----hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHH
Q 011857 266 LCLENWYYRILMLMTGNLPN-----PK---LAVDAL-SICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIV 336 (476)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 336 (476)
+....+...+|+.++++... .. ...+.| +++.++..++..+..+++++..|.+++.+|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888865421 01 223333 4566788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHH
Q 011857 337 SVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYF 416 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 416 (476)
+.++...++.|.++++..+++++..++.++++ +..+++++++..++.+++....+++++.||+|..++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999886543 577899999999999999999999999999999999999986 8
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 417 VGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 417 ~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+++++++.+...+.+|..|+|+++. +++.+..++..++.+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~-i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFI-ITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999998876557899999999999 99999999888887664
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=301.16 Aligned_cols=449 Identities=44% Similarity=0.732 Sum_probs=427.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 011857 24 LARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGA 103 (476)
Q Consensus 24 ~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~ 103 (476)
.+++.+...|++++++.|++.........+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.
T Consensus 19 ~~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga 98 (473)
T KOG1347|consen 19 FFSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGA 98 (473)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcc
Confidence 34445789999999999999999999999999999999999999999999999999878889999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhH
Q 011857 104 KKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMA 183 (476)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (476)
++++....+.+++..+....+++...++...+++...++.++++...+..|.++..+..+..........++|++++...
T Consensus 99 ~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~ 178 (473)
T KOG1347|consen 99 KKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLP 178 (473)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHH
Q 011857 184 VAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASG 263 (476)
Q Consensus 184 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 263 (476)
..+......++++.+++++++..++|..|++++..+++.........+......+..|..++.+ .+.++++++.++|.+
T Consensus 179 ~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~ 257 (473)
T KOG1347|consen 179 LLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSA 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999999998888876666677777777 889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHH
Q 011857 264 VMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSL 343 (476)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (476)
++..+++..+.+...+.|..++...+++.-++..++....++++.+++.+...++++.+|++|.+.+|.........++.
T Consensus 258 ~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~ 337 (473)
T KOG1347|consen 258 VMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVA 337 (473)
T ss_pred heeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999977889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHH
Q 011857 344 IGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGF 423 (476)
Q Consensus 344 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 423 (476)
.+...+..++...+.+..+|++|+++.+...+..++++...++++.+.+..+..++.|+++...+.++.+.++..+|+..
T Consensus 338 ~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~ 417 (473)
T KOG1347|consen 338 IGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGL 417 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhh
Q 011857 424 LMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICKE 474 (476)
Q Consensus 424 ~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (476)
.+.+..++|..|.|.+.. .+..++.........+.||+++.++++++..+
T Consensus 418 ~l~~~~~~g~~glw~G~~-~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~ 467 (473)
T KOG1347|consen 418 YLGFFTKFGVKGLWIGIL-LGFSVQTLVLAIVTARTDWKNQAEKAFARIIA 467 (473)
T ss_pred EEEEEEecCceEEEeehH-HHHHHHHHHHHHheeeccHHHHHHHHHHHHHh
Confidence 999888999999999999 99888888888888889999999999887653
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=4.1e-36 Score=287.57 Aligned_cols=337 Identities=27% Similarity=0.475 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 011857 41 PSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVL 120 (476)
Q Consensus 41 p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
|.+++++...+...+|+.+++++|++++++++.+.++..+ ...+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998887 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Q 011857 121 FTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVS 199 (476)
Q Consensus 121 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 199 (476)
...+++..+ +..+.+++.++++.+++..+.+..+++++.++.++..+.....+.+|+.||++.+...++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 999988885 5778888888888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CccchHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCCcHHhHhcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011857 200 WLFVY-KMQ-LGLIATIHILNFSWWVLVFGLFGYVVFG-GCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRIL 276 (476)
Q Consensus 200 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 276 (476)
+++++ .++ +|+.|+++++.++.++..++..++.+++ +.+.++++....+++..|+++++|.|..++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 667 7899999999999999998887777653 33333222222335678999999999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011857 277 MLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYH 356 (476)
Q Consensus 277 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (476)
+.+++.++ +.++++|+++.++.++...++.+++++..|.+++++++||.++.++..+++.++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCchHHHHHHHHHHHHH
Q 011857 357 KEIALIFTSSEVILQAVNELSILL 380 (476)
Q Consensus 357 ~~i~~l~~~~~~~~~~~~~~l~i~ 380 (476)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999988888887664
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5e-35 Score=286.78 Aligned_cols=403 Identities=11% Similarity=0.025 Sum_probs=341.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 011857 35 LWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYM 113 (476)
Q Consensus 35 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 113 (476)
+.|.+.+...+.+.....+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788899999999999999999999999 59999999999999999756666889988888999987 67888999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Q 011857 114 QRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVAL 192 (476)
Q Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 192 (476)
++++.+.+..++++.+ ++.+.+|+...+..+++. ..+..+..+..++..+.....+.+|+.||++.++..++.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988774 577788888877666653 24566666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCCcHHhHhcHHHHHHHHhHHHHHHHHHHH
Q 011857 193 LVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG-GCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENW 271 (476)
Q Consensus 193 ~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 271 (476)
++|+.+ +++.+.. .|+.|+++++++++.+..+...++.+|+ +.+.++.+++. +++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444322 3999999999999999887776666554 22222112222 356789999999999999999999
Q ss_pred HHHHHHHHHc-CCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011857 272 YYRILMLMTG-NLPNPKLAVDALSICMTINGW-EIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFW 349 (476)
Q Consensus 272 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
....++.+++ .+| ++++|+|+.+.|+.+. ...+..+++++..|.+++. +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 666 7899999999999885 4789999999999999985 6788899999999999999999999
Q ss_pred HHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHHHh
Q 011857 350 LLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVF 429 (476)
Q Consensus 350 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 429 (476)
+.+.+++++++.++.+|+ ++.+.++++++.++.++...+...+..+.+.++++.....++.. .++++++++++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999876 77789999999999999988888888888888888887777766 489999999999 8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011857 430 HQGVKGIWLGMIFGGTAVQTLILAVITM 457 (476)
Q Consensus 430 ~~g~~g~~~a~~~i~~~~~~~~~~~~~~ 457 (476)
.+|..|+++++. +++.+...+......
T Consensus 384 ~~G~~G~a~a~~-is~~~~~~~~~~~~~ 410 (416)
T PRK15099 384 LHGALGAAQAYM-ATYIVYFSLCCGVFL 410 (416)
T ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999 999999987765554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=8.7e-30 Score=249.81 Aligned_cols=386 Identities=15% Similarity=0.111 Sum_probs=335.9
Q ss_pred cCh-hhHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 011857 63 LGD-LELAAISIANNVIVAFNFGLL-LGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLK 139 (476)
Q Consensus 63 lg~-~~~g~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 139 (476)
+|. ++..++..+.++..++..... .++.++..|..++.. ++++++.++..++...+.....+++++ .+++++++++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 564 456689999999998444443 568999999999998 888999999999988888877777774 5788888888
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchHH
Q 011857 140 LF--GQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLG---LIATI 214 (476)
Q Consensus 140 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~a 214 (476)
.+ +.+++..+.+...++++.+..++.++..++.+++++++|+..+....+..++..++...++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 5678888999999999999999999999999999999999999999998887766544444333 46 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 011857 215 HILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALS 294 (476)
Q Consensus 215 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 294 (476)
+|..++.++..++.....+|.+.+.++. ++.+ .+..|++++...|..+.+...++...+++.+.+.++ +.++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 9999999999998888888765443322 1211 346889999999999999999999999999999988 66888999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcC----CchHH
Q 011857 295 ICMTINGWEI-MIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFT----SSEVI 369 (476)
Q Consensus 295 ~~~~i~~~~~-~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~ 369 (476)
.++++.+++. .+..+++++..|.+++...+||.++.++..++.++..+.+.+|.++++..+++++++++. .|++.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999988 567899999999999999999999999999999999999999999999999999999984 35666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011857 370 LQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQT 449 (476)
Q Consensus 370 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~ 449 (476)
.+.....+.+++++.+++++.......+++.||+|.++..+..+. ++++.+++++. +.+|..|+++++. ++..+..
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~s-l~~~i~~ 393 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATS-LSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHH
Confidence 889999999999999999999999999999999999999999996 99999999988 8999999999999 9999999
Q ss_pred HHHHHHHhhC
Q 011857 450 LILAVITMRC 459 (476)
Q Consensus 450 ~~~~~~~~~~ 459 (476)
++.....+|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888888776
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=1.2e-28 Score=247.45 Aligned_cols=398 Identities=11% Similarity=0.095 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHH
Q 011857 32 SKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLG 110 (476)
Q Consensus 32 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~ 110 (476)
.|+..+.+.+..++++.....+++...+++| +||+++|.++.+.++..++......|++++. .|. +|. .+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~--~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDI--SH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccC--CH
Confidence 4678889999999999999999999999999 6999999999999999997777888888764 222 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHH
Q 011857 111 VYMQRSWIVLFTCCVLLLPL-YLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSL 189 (476)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 189 (476)
+...+.+.+....++++.++ +...+++...+ ++++. ...+++..+..++..+.....+.++.+++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34455666666667666644 44445544444 34443 34577778888888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHHHHHH
Q 011857 190 VALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLE 269 (476)
Q Consensus 190 ~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 269 (476)
...+...++...+.. .+.|..+.+++..++..+..+......++ +.++++ ++ +++..|++++++.|...++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 888877777666654 47799999999999988776654333322 222221 11 2456899999999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 011857 270 NWYYRILMLMTGNLPNPKLAVDALSICMTINGWEI-MIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFF 348 (476)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (476)
.+..+.|+.+++++.+ ++++|.|+.+.++.+.+. .+...++++..|.+++. ++|.++.++.+++..+....+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 889999999999988765 45556788899999885 5788999999999999999999999
Q ss_pred HHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHHH
Q 011857 349 WLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWV 428 (476)
Q Consensus 349 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 428 (476)
++++.+++++++.++.+++ ++.+...+++++++.++..........+++.||+|..+..+++.. ++.+|..+.+.
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~-- 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG-- 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--
Confidence 9999999999999998766 888999999999999999999999999999999999999998886 88888888877
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 429 FHQGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
+.+|..|+++++. +++.+......+...|
T Consensus 376 ~~~G~~g~a~a~~-i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFL-LVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7899999999999 9999988877776644
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=9.7e-28 Score=230.82 Aligned_cols=419 Identities=12% Similarity=0.026 Sum_probs=347.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-hhHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhhhcCCccchH
Q 011857 33 KKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGD-LELAAISIANNVIVAFNFG-LLLGMASALETLCGQAFGAKKYYML 109 (476)
Q Consensus 33 k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~-~~~g~~~~~~~~~~~~~~~-~~~gl~~~~~~~~s~~~~~~~~~~~ 109 (476)
+.++|.+.-.....+++.+.+++-..+++. +|+ ..-.++..+..+.+++-.. ....++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 345566666777777888888888888888 687 4567999999999985433 4445689999999999877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHH
Q 011857 110 GVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLF-GQ--PNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVA 185 (476)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (476)
++..+........+.+..++ ..+..+.++... .. +++....+....+++.+..++.++.....+.+++.+|+..+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 77777777566666666664 466666666344 32 233333577888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHH
Q 011857 186 WVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVM 265 (476)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (476)
+..+..++.-+.....+.........+.+|+..++.+...++.+...+|.+...+++ +..+ .+.+|++.+.-.|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~-~~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFK-DPGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCC-chhHHHHHHHHHHHHHH
Confidence 999988877765555444432224678899999999999999999998874333222 1111 25788999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 011857 266 LCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEI-MIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLI 344 (476)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
....++...+|+.+.+... +.+++.+..++|+.+++. .+..+++++..|.++++..++|.++.++..+.++++++.+
T Consensus 245 ~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 557889999999999998 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcC----CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHH
Q 011857 345 GLFFWLLIMIYHKEIALIFT----SSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVP 420 (476)
Q Consensus 345 ~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 420 (476)
.+|.++++.++++|+++++. .+++....+.+.+..+.++.++..+..+....+++.+|+|.++++++++. ++|+.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHH
Confidence 99999999999999999983 24555788899999999999999999999999999999999999999996 99999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 421 LGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 421 l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
++..+. +.+|..|++.+.. ++.+++..+.++..+|+
T Consensus 402 l~~~l~--~~~~~~giala~s-~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 402 LNLLLI--PPLGHVGLALATS-LAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHH--hhccchHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 998777 8999999999999 99888888888877776
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.97 E-value=1.5e-26 Score=231.72 Aligned_cols=392 Identities=15% Similarity=0.111 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011857 30 VESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYM 108 (476)
Q Consensus 30 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 108 (476)
+..+++.|.+.....+++.+.+.+++....++| +|++++|.++.+.++.+++......|++.+..+.++++..++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 346778899999999999999999999999999 6999999999999999997787889999999999998865555444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011857 109 LGVY-MQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWV 187 (476)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (476)
.... ...........+.+.........+. ++ .....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444443333333322222222 12 23345678889999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHHHH
Q 011857 188 SLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLC 267 (476)
Q Consensus 188 ~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (476)
.... ..-....+.+.. .......++...+......+...+..+++.+..+...+. .++..|+.+++|.|...++.
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHH
Confidence 4444 111222222221 245556677777776666665555542211111111121 35788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHH
Q 011857 268 LENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLF 347 (476)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
...+..+.|+.+++.+.+ +.++|.|+.++++......+..+++++..|.+++.+.++|.++.++..+++.++...+++|
T Consensus 228 ~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHH
Q 011857 348 FWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGW 427 (476)
Q Consensus 348 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 427 (476)
..+++.++++++..++.+++ +..+...+.+++++.++.++.......+++.||++..++.+.++. +.++.+++++.
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li- 382 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI- 382 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH-
Confidence 99999999999999998776 666899999999999999999999999999999999999999997 99999999999
Q ss_pred HhcCCchhHHHHHHHH
Q 011857 428 VFHQGVKGIWLGMIFG 443 (476)
Q Consensus 428 ~~~~g~~g~~~a~~~i 443 (476)
+.+|..|+..++. .
T Consensus 383 -~~~g~~g~~~a~~-~ 396 (480)
T COG2244 383 -PRFGLIGAAIATA-S 396 (480)
T ss_pred -HhhhhhhHHHHHH-H
Confidence 8999999999886 5
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=1e-20 Score=185.60 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=193.2
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGK 328 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~ 328 (476)
++..|++++.++|..++++...+...+|+.+++++++ +.++++.+++.++..+...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3467899999999999999999999999999999863 778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHH
Q 011857 329 GAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAY 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 408 (476)
++++..++++.+++..+++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 409 VNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 409 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
.++++. ++|+++++++.+..++|+.|+++|+. +++.+..++..+++++
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~-is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATV-IAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999996 99999999999777899999999999 9999988776665554
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=7.8e-21 Score=186.53 Aligned_cols=208 Identities=23% Similarity=0.267 Sum_probs=199.1
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGK 328 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~ 328 (476)
++..|+++++++|..+.++.+.+...+|++++++++ ++++++-+++.++..++..+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 457889999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHH
Q 011857 329 GAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAY 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 408 (476)
++++..+.+...+++++++..++...+++++..++.+++|+.+.+.+|+++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHH-hc-CCchhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 011857 409 VNLGTYYFVGVPLGFLMGWV-FH-QGVKGIWLGMIFGGTAVQTLILAVITMRCD 460 (476)
Q Consensus 409 ~~~~~~~~~~i~l~~~l~~~-~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~ 460 (476)
.++++. ++|+.+++++++. .. +|+.|+++|+. +++.+..++...++++++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~-ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATV-IARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 999997 9999999999976 34 99999999999 999999998888887764
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.2e-20 Score=186.77 Aligned_cols=205 Identities=20% Similarity=0.132 Sum_probs=188.3
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGK 328 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~ 328 (476)
++.+|++++.++|.+++++.+.+...+|+.++++++ ++++++++++.++..+...+..+++++..|.++|++|+||++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 457899999999999999999999999999999987 779999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHH
Q 011857 329 GAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAY 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 408 (476)
++++..+.+..+.+.++++..+... +.+++..+++.|+|+.+.+.+++++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877755 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 409 VNLGTYYFVGVPLGFLMGWV----FHQGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 409 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
.++++. ++|+++++++.+. +++|+.|+++|+. +++....+...+++++
T Consensus 163 ~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~-i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTA-LVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 999996 8899999998743 3589999999999 9988777655555544
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=2.2e-20 Score=185.08 Aligned_cols=204 Identities=17% Similarity=0.130 Sum_probs=190.9
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhh
Q 011857 250 SGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKG 329 (476)
Q Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~ 329 (476)
+..|++++.++|.+++++...+...+|+.++++++ ++++|+++++.++..+...+..+++++..+.+++++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 46889999999999999999999999999999988 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcC--CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhH
Q 011857 330 AKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFT--SSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVA 407 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 407 (476)
+++..+.+..+++.++++.+++...+++++..++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011857 408 YVNLGTYYFVGVPLGFLMGWV----FHQGVKGIWLGMIFGGTAVQTLILAVITM 457 (476)
Q Consensus 408 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~i~~~~~~~~~~~~~~ 457 (476)
+.++... ++|+++.+++.+. +++|+.|+|+|+. +++.+..++..+++.
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~-is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLT-ISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999874 9999999998853 3789999999999 999998887665554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=2.4e-20 Score=184.44 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=194.3
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGK 328 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~ 328 (476)
++..|++++.++|..++++.+.+...+|+.+++++.+ ++++++++++.++..+...+..+++.+..+.+++++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g-~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG-AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4567899999999999999999999999999999732 778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHH
Q 011857 329 GAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAY 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 408 (476)
+.++..+++..+++.++++.+++...+++++..+++.|+++.+.+.+++++..++.++..+......++++.||++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 409 VNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 409 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
.++.+. ++|+++++++.+.+++|+.|+++++. +++.+..++..++++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~-is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATA-LAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 999985 99999999998777899999999999 99999988777666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=5.2e-20 Score=182.88 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=193.0
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGK 328 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~ 328 (476)
++.+|++++.++|..+++....+...+|+.++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 567899999999999999999999999999999987 678999999999988888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHH
Q 011857 329 GAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAY 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 408 (476)
+.++..+.++.+.+.++++.+++++.+++++..+++.|+++.+.+..++++..++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHH----hcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 409 VNLGTYYFVGVPLGFLMGWV----FHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 409 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
.++++. ++++++++++.+. +.+|+.|+++++. +++.+..++..++.+|+
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~-is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATA-IVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 999986 8999999988742 4689999999999 99999999887776654
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.8e-16 Score=146.57 Aligned_cols=271 Identities=16% Similarity=0.135 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 011857 35 LWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYM 113 (476)
Q Consensus 35 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 113 (476)
+.|.+.....+++.....+++...+++| +|++++|.++...++..++......|++++..+..+++..+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 69999999999999999866667999999988888886432 34445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 011857 114 QRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALL 193 (476)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (476)
........+.+++......... .++.+ +... .+........+...........+++.++.+.....+....+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444443333322222 33322 2211 12222222225778888899999999999999999999988
Q ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHHHHHHHHHH
Q 011857 194 VHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYY 273 (476)
Q Consensus 194 ~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 273 (476)
...++...++.. +.+..+..++..++..+...+...+.+|+. +.++ +..+++..|++++++.|..+++....+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776666654 345888999999999888888877777642 2222 22225688999999999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 274 RILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANE 321 (476)
Q Consensus 274 ~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~ 321 (476)
..|..+++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999884 88999999999999999999999999999999875
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=1.1e-16 Score=161.51 Aligned_cols=206 Identities=14% Similarity=0.090 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857 28 VWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY 107 (476)
Q Consensus 28 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 107 (476)
.++..|++++.+.|..+++....+...+|+.+.+.+|++++++++.+.++..+....+..+++++..|.++++++++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34678999999999999999999999999988666899999999999999987444567899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchh
Q 011857 108 MLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQ----PNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTM 182 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (476)
+.++.++++.......+++..+ +..+++++++++.. ++|..+.+..++++.+++.++..+.....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 9999999999999999988885 57888999888755 567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 011857 183 AVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG 235 (476)
Q Consensus 183 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 235 (476)
.+++.+....++|++++++++.. +|..|+++++.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998754 5999999999999999998887777763
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.80 E-value=2e-17 Score=158.28 Aligned_cols=194 Identities=17% Similarity=0.190 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 011857 261 ASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVT 340 (476)
Q Consensus 261 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
|.++++....+...+|+.++++++ ++++++|+.+.++..+...+..+++++..|.+++++|++|+|+.++..++...+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778899999999999999999988 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHH
Q 011857 341 SSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVP 420 (476)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 420 (476)
.+..+++.+++..++++++..+++.|++..+.+..++++..++.++.++......++++.||.+...+.++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999986 88999
Q ss_pred HHHHHHH-Hhc-CCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 421 LGFLMGW-VFH-QGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 421 l~~~l~~-~~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
+++++.. ..+ +|+.|+++++. +++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~-~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATV-ISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 9888874 334 66999999999 9999998877766664
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=1.9e-18 Score=146.41 Aligned_cols=162 Identities=23% Similarity=0.413 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 011857 261 ASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVT 340 (476)
Q Consensus 261 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
|..++++.+.+.+.+++.++++++ ++++++++++.++..+...+..+++++..+.+++++|++|+++.++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHH
Q 011857 341 SSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVP 420 (476)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 420 (476)
...++++.++....+++++..+|++|+++.+.+.+++++..++.++.+......+++++.||++..++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 011857 421 LGFL 424 (476)
Q Consensus 421 l~~~ 424 (476)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=7.9e-15 Score=144.30 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYM 108 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 108 (476)
.+..|++++...|..++....++...+|+.+.+++++.++++++.+..+.++....+..++++...|..||...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 35688999999999999999999999999999999999999999999999997778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhH
Q 011857 109 LGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFG----QPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMA 183 (476)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (476)
.++..++++.....+.++..+ +..+++|+++.+. .+.|-.+.....+++.+++.++.++..++...+.+.||+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 999999999999999999985 5889999997763 46677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 011857 184 VAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG 235 (476)
Q Consensus 184 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 235 (476)
++..+..+.++|++++.++... +|..|.++++.++..+..++.+...+|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888864 5999999999999999999988888774
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.71 E-value=2.4e-15 Score=151.19 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Chh---------hHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 011857 28 VWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHL-GDL---------ELAAI-SIANNVIVAFNFGLLLGMASALETL 96 (476)
Q Consensus 28 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~---------~~g~~-~~~~~~~~~~~~~~~~gl~~~~~~~ 96 (476)
.++..|++++.+.|..++++...+...+|+.++++. ++. .+|.+ +.+.++..+ ......+++++..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999999883 321 22322 345556666 566788999999999
Q ss_pred HHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011857 97 CGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFL 175 (476)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 175 (476)
+++++|++|+++.++..++...+...++++..+ +..++++++.++..++ ++..++++.+++.++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988875 5778888888876443 35678999999999999999999999
Q ss_pred HHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 011857 176 QCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVF 234 (476)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 234 (476)
++.||++.+++.+....++|++++++++...++|..|+++++.+++.+..++..+..+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988874445799999999999999999888777765
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=1.5e-17 Score=140.98 Aligned_cols=160 Identities=26% Similarity=0.380 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 011857 41 PSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVL 120 (476)
Q Consensus 41 p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
|..++++...+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.++|++|++|+++.++..+.+..+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHH-HHHHHH
Q 011857 121 FTCCVLLLPL-YLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVAL-LVHIFV 198 (476)
Q Consensus 121 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 198 (476)
...+++..++ ..+.+++..+++.|++..+.+..|+++..++.++..+.....+++++.||++.+++.+.... ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999998865 78888899999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 011857 199 SWL 201 (476)
Q Consensus 199 ~~~ 201 (476)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.67 E-value=9.2e-13 Score=127.79 Aligned_cols=204 Identities=13% Similarity=0.115 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 011857 30 VESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYML 109 (476)
Q Consensus 30 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~ 109 (476)
+..|++.+...|+.++...+++...+|+.+.+.+.+.....+..+..+.++....+..++++...|..||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHH
Q 011857 110 GVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFG----QPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAV 184 (476)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (476)
++..+.++.+..+..+|... +..+++|+++.+. .+++....+...+....+++++..+..++...+++.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999995 5888999997762 345566678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 011857 185 AWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG 235 (476)
Q Consensus 185 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 235 (476)
+.+.+++.++|++++..+... +|..|.+.++.++.++.+.+.++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999776654 5888899999999999999888888775
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=3e-13 Score=136.00 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY 107 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 107 (476)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.......+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 5678999999999999999999999999999999 59999999999999988744555556777788988886 57788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011857 108 MLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAW 186 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (476)
+.++.+++.......++++..+ +..++++++..+.+++ +..+...++++++..++..+.......+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 8999999999999888888885 5778888887765443 456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 011857 187 VSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVF 234 (476)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 234 (476)
.+++..+++++..+.+.. .+|..|+++++.+++.+...+..++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777666654 3599999999999999988887777755
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=6.9e-13 Score=120.98 Aligned_cols=247 Identities=15% Similarity=0.161 Sum_probs=179.0
Q ss_pred HHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 011857 52 MSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPL 130 (476)
Q Consensus 52 ~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (476)
.+++...+++| +|++++|.++....+..+.......|+++...+ ..++|+++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788999 699999999999999998555557777766444 223556666666666665544444443332
Q ss_pred HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 011857 131 YLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGL 210 (476)
Q Consensus 131 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~ 210 (476)
..... ..+ .+++ ...++....+..+........++.+++++|.+.....+....+....+...+.. .+.+.
T Consensus 78 ~~~~~---~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 AILIA---YFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred HHHHH---HHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 11111 122 2332 223456677778888999999999999999999999999998877544444443 34488
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcHHhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 011857 211 IATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAV 290 (476)
Q Consensus 211 ~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (476)
.+..++..++.++..++.+...++ +.+.+. + .+..| .++.+.|..+.+.......+.|..+++.+. +++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR-KLRLSF-----K-FSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCCCc-----h-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH
Confidence 888999888888877766553332 211111 1 22234 789999999999999999999999999854 38899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 011857 291 DALSICMTINGWEI-MIPFAFLAGTGVRVANE 321 (476)
Q Consensus 291 a~~~~~~~i~~~~~-~i~~~~~~~~~p~~~~~ 321 (476)
|.|+++.++...+. .+..++++...|.++|.
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999888 99999999999999863
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.63 E-value=1.8e-13 Score=134.44 Aligned_cols=200 Identities=6% Similarity=-0.054 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011857 28 VWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKY 106 (476)
Q Consensus 28 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 106 (476)
+++..|++++++.|..+++....+....|+.++++ +|++++|.|+.+.++.......+..+++++..|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 46788999999999999999999999999999985 89999999999999988535788999999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHH
Q 011857 107 YMLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVA 185 (476)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (476)
++.++..++........+.+..+ +.+++++++.++..++ .+++.+++++++++.++...+.......-+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999888888877775 4688899998886553 23367788998888888888777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 011857 186 WVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVF 234 (476)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 234 (476)
...+...++++++++++++. +|..|+++++.+++.+...+......+
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999865 499999999999999999877655544
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.55 E-value=2.2e-12 Score=129.38 Aligned_cols=185 Identities=17% Similarity=0.215 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011857 28 VWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKY 106 (476)
Q Consensus 28 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~ 106 (476)
.++..|++++.+.|...+++...+.+.+|+.++++ +|++++|.|+.+..+... ...+...++....|..++.+.++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 57899999999999999999999999999999999 599999999988888888 8889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHH
Q 011857 107 YMLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVA 185 (476)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (476)
++.++..++........+++..+ +..+++|++..+..++. ..+...+++.++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999986 57788888877655432 2267788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchHHHHH
Q 011857 186 WVSLVALLVHIFVSWLFVYKMQLGLIATIHIL 217 (476)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~ 217 (476)
..+.++.++|.+++++++.. +|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999865 4888888888
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.38 E-value=3.9e-09 Score=104.87 Aligned_cols=420 Identities=11% Similarity=-0.005 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 011857 36 WHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVA-FNFGLLLGMASALETLCGQAFGAKKYYMLGVYM 113 (476)
Q Consensus 36 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~ 113 (476)
.+.+.-.++.+++..+.+++-+.++-| ++|+.+|..++-..+... .....=-++-.+..+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 355667788888888888887776666 799999988655554433 234455566666444332221111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHH----HHHHc-CCCHH---HHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHcc
Q 011857 114 QRSWIVLFTCCVLLLPLYL--FASP----LLKLF-GQPND---VAELSATVSMWMLPLHFSFAFQFP----LQRFLQCQL 179 (476)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~--~~~~----i~~~~-~~~~~---~~~~~~~~l~i~~~~~~~~~~~~~----~~~~l~~~~ 179 (476)
+.......++.+++..+.+ ...| ...+. ...++ ..+.....+.+...+.+...+... .+..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222233333332221111 0100 11111 11111 122223333444444444444443 344455555
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-cCCcc------chHHHHHHHHHHHHHHHHHHHHHhc---c---cccccCCCcH
Q 011857 180 KTMAVAWVSLVALLVHIFVSWLFVYK-MQLGL------IATIHILNFSWWVLVFGLFGYVVFG---G---CPLTWTGFSA 246 (476)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~------~g~a~a~~i~~~~~~~~~~~~~~~~---~---~~~~~~~~~~ 246 (476)
|.+.-........+++..+....... .+++. .-+.++..+++....+......... . .+...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554443333211 11111 1124455555555443322211111 1 1111122211
Q ss_pred ---HhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 011857 247 ---EAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGN--LPNPKLAVDALSICMTINGWEI-MIPFAFLAGTGVRVAN 320 (476)
Q Consensus 247 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~~~-~i~~~~~~~~~p~~~~ 320 (476)
+....-+++++.....+..++.-.+...-|.+++.. +.+ .++-|.|++++++-+++. ++..++-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011123688899999999999999999999999988 775 778899999999988876 6778888888888888
Q ss_pred hhcCCCh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhh
Q 011857 321 ELGAGNG---------KGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQP 391 (476)
Q Consensus 321 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 391 (476)
...+++. ++..+.+...++....+++.+...-..+++.+..++.+++-........++.++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8766433 3456667777777777777777766777777888876655333446889999999999999999
Q ss_pred HHHHHhhhcCcchhhHHHHH---HHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 392 VFSGVAVGSGWQSYVAYVNL---GTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 392 ~~~~~l~~~g~~~~~~~~~~---~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+...+.++..+.+.....+- ... ++-+..++++... .+|..|..+|-. +.+.++.+.+..+.++.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~-iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANC-INMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999988776554333 232 5556677888733 699999999999 99999999887777553
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.25 E-value=8.1e-10 Score=108.18 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=186.8
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGW-EIMIPFAFLAGTGVRVANELGAGNG 327 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~-~~~i~~~~~~~~~p~~~~~~~~~~~ 327 (476)
++..|++.+++.|..+....+.....++..++++.| +.+.++.+++....+. ...+..++.++..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 567899999999999999999999999999999999 5588898888877766 4467889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhH
Q 011857 328 KGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVA 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 407 (476)
+......+++........++.+.. +.+.+++...+..|+++...+..+.+......+-+.........+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888887654 5566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 408 YVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 408 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+...... .+++++++++.+...+|..|+..+.. +++.........+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~-~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALV-ASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHH-HHHHHHHHHHHHHheec
Confidence 9999996 99999999999999999999999999 99999998777766543
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.9e-07 Score=85.68 Aligned_cols=414 Identities=14% Similarity=0.021 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCc---
Q 011857 31 ESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-LGDLELAAISIANNVIVA-FNFGLLLGMASALETLCGQAFGAKK--- 105 (476)
Q Consensus 31 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~g~~~~~~~~~~~-~~~~~~~gl~~~~~~~~s~~~~~~~--- 105 (476)
......+.+.-.+..+++..+.+++-+.++-| ++++.+|..++-..+.+- .....--++.-+ ....|..+
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~ 80 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADT 80 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCcc
Confidence 34445566666777777777777765555555 799999998776666553 122223334333 22222222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHH
Q 011857 106 YYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPND-VAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAV 184 (476)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (476)
-++..+..+.+.-+.++..+++.-+++....- .|+. ..+....-+.+...+.+...+...+.-..|..-+.+.-
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s-----~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~ 155 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYFWLGFLSS-----SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLR 155 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhc-----cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22444445555555555554444222111100 0111 11122222344444444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhcC-CccchHHHHHHHHHHHHHHHHHHHHHhc-c-cccc---------cCCCcHH--hH
Q 011857 185 AWVSLVALLVHIFVSWLF-VYKMQ-LGLIATIHILNFSWWVLVFGLFGYVVFG-G-CPLT---------WTGFSAE--AF 249 (476)
Q Consensus 185 ~~~~~~~~~~~i~l~~~l-i~~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~-~~~~---------~~~~~~~--~~ 249 (476)
.+...+..++...+.+.. +...+ .++.-.|+|.........++..++..+. + .+.. +++.... ..
T Consensus 156 ~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ 235 (530)
T KOG2864|consen 156 AIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGI 235 (530)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccc
Confidence 666666655553333332 22222 3555556666665555544333332222 2 0000 0111000 00
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCh
Q 011857 250 SGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPN-PKLAVDALSICMTINGWEI-MIPFAFLAGTGVRVANELGAGNG 327 (476)
Q Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~i~~~~~-~i~~~~~~~~~p~~~~~~~~~~~ 327 (476)
-.-++..+.-.....+...-.+...-+.++++.... +-.+-|.|.++++.-++.. ++..++-.......++....++.
T Consensus 236 ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~q 315 (530)
T KOG2864|consen 236 FFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQ 315 (530)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccch
Confidence 122456666666667777778888878777763321 1335568999988877655 67788888888888888887766
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcch
Q 011857 328 KGAKFA---TIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQS 404 (476)
Q Consensus 328 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 404 (476)
|+.|+. +.+.++....+++.....-.-++++...++++++-....+...+++++...++.+++.+..++..+.++.+
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 665554 45555555555555555555566778887776553333466899999999999999999999999988766
Q ss_pred hhHH---HHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 405 YVAY---VNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 405 ~~~~---~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
..-. ...+.. +.-+.+++++. ..+|..|...|-. +.+.++.+....+.++
T Consensus 396 qi~~~n~~mlafS-viflilsylL~--~~~~~~GlIlANi-iNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 396 QIDKHNKFMLAFS-VIFLILSYLLI--RWFGLVGLILANI-INMSLRILYSLRFIRH 448 (530)
T ss_pred HHHhcccchhHHH-HHHHHHHHHHH--HHhchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5433 223333 55678899999 7789999999999 9999988877555543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.03 E-value=1.8e-06 Score=77.16 Aligned_cols=316 Identities=13% Similarity=0.020 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-Ch-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH-L-GD-LELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKK 105 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-l-g~-~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~ 105 (476)
..+.+++.++-.|..++.....+...+-+.-++| - .+ +.+++|+++..+.-+ ...+...+-+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHHh-----cch
Confidence 3467889999999999999999988888888887 3 33 559999999999888 6666666666533333 333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHHH-hhHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchh
Q 011857 106 YYMLGVYMQRSWIVLFTCCVLLL-PLYL-FASPLL-KLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTM 182 (476)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (476)
+++ ++..........+...+.. +.+- +...++ ..++.++++.+.+...+.++.+.-++.++....++++--++++.
T Consensus 81 rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 332 2222222222222222222 2232 333333 56688999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcc-chHH---HHHHHHHHHHHHHHHHHHHhc--ccccccCCCcHHhHhcHHHHH
Q 011857 183 AVAWVSLVALLVHIFVSWLFVYKMQLGL-IATI---HILNFSWWVLVFGLFGYVVFG--GCPLTWTGFSAEAFSGLWEFV 256 (476)
Q Consensus 183 ~~~~~~~~~~~~~i~l~~~li~~~~~g~-~g~a---~a~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (476)
.....++......+++...+... +... ..+. .+...+..+-+.+...-.+++ +..+...+....+...+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence 77766666555555555455531 1111 1111 122222211111111111111 222222233333456789999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhh---
Q 011857 257 KLSAASGVMLCLENWYYRILMLMTGNLPNPK----LAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKG--- 329 (476)
Q Consensus 257 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~--- 329 (476)
++.+|.+.....+.....+.+.++++..+|. ++++...+.+...-..+.-..-+ .+..|..-++-.+++..+
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~ 317 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGN 317 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccC
Confidence 9999999999999999999999999843333 45555554444433333222221 233444332211122211
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH
Q 011857 330 --AKFATIVSVVTSSLIGLFFWLLIM 353 (476)
Q Consensus 330 --~~~~~~~~~~~~~~~~~~~~~~~~ 353 (476)
.+..++|.....+.+++..+..++
T Consensus 318 ~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 318 PVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233667777777777776665553
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.49 E-value=2.8e-05 Score=77.71 Aligned_cols=204 Identities=8% Similarity=-0.003 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc-
Q 011857 31 ESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH--L-GDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKY- 106 (476)
Q Consensus 31 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--l-g~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~- 106 (476)
.-+++++++.....+++.-.+.+--|++++.. + ..++-|.|+++.++-++..-.+...+..+.....++...+++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 35788899999999999999999999999999 6 8899999999999999988888889999888888888765433
Q ss_pred --------chHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011857 107 --------YMLGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQC 177 (476)
Q Consensus 107 --------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 177 (476)
++..+.+...+.+...+++++.. +...++.++++++++.=..+.+...++..+..+|+.+++.+..++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 33556677777777777766664 467777777776543322334567789999999999999999999998
Q ss_pred ccchhHHHHHH---HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 011857 178 QLKTMAVAWVS---LVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG 235 (476)
Q Consensus 178 ~~~~~~~~~~~---~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 235 (476)
....+.....+ .+..++-+..++++... ++|..|..+|+.+....-......+.++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765554444 44456667778888876 78999999999999999998888888764
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.39 E-value=2.9e-06 Score=70.09 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011857 377 SILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVIT 456 (476)
Q Consensus 377 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~ 456 (476)
+++++++.++.++....++++++.||+|..+..+..+. ++++++++++. +++|..|+++++. +++.+..++..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~-i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATA-ISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999996 99999999998 9999999999999 99999999888888
Q ss_pred hhC
Q 011857 457 MRC 459 (476)
Q Consensus 457 ~~~ 459 (476)
+|+
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 776
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.38 E-value=6e-05 Score=62.15 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=72.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 011857 155 SMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVF 234 (476)
Q Consensus 155 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 234 (476)
+++.+++.++..+.+.....+++.||++..+..+..+.++|+++++++++ ++|..|+++++.++..+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999975 4599999999999999999888888877
Q ss_pred c
Q 011857 235 G 235 (476)
Q Consensus 235 ~ 235 (476)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.33 E-value=0.0025 Score=58.60 Aligned_cols=320 Identities=11% Similarity=0.045 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011857 81 FNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLP 160 (476)
Q Consensus 81 ~~~~~~~gl~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~ 160 (476)
+...+..|+....++.+|...=++|.+++..-+.....+....+.++....+ ...++.... |=...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si~-----yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSIV-----YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhHH-----HHHHHHH
Confidence 4566888999999999999988888877766555554444444433332111 111222221 2234455
Q ss_pred hHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011857 161 LHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLT 240 (476)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~ 240 (476)
.....+...+...++.+.+|.+.....-.++..+..++..++- +.+..|..++..++..+.......+..|.-...+
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 6677777888888999999999998888888887777766654 3489999999999998888877777766411111
Q ss_pred cCCCcHHhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHH------HHHHHHHHHHHHHHHHHH-----
Q 011857 241 WTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVD------ALSICMTINGWEIMIPFA----- 309 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~i~~~~~~i~~~----- 309 (476)
...++.- +..++ =....+.....+++..+|+.+.=..++++.-.+ .|.+..-...+...|..+
T Consensus 217 ~i~FdFL--~~~~~----y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 217 RIGFDFL--LYRRK----YPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred ccceehh--hhhhc----chHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 1112111 11111 123445566677777777765433332222221 233333333333333322
Q ss_pred HHHHHHHHHHhhhcC----C-------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHH
Q 011857 310 FLAGTGVRVANELGA----G-------NGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSI 378 (476)
Q Consensus 310 ~~~~~~p~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 378 (476)
+-+...+.--+.+.+ + +.++.....++.+.-.+-+-...++.++++++.+...+.-++ ...+.++
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHH
Confidence 223333333222211 1 233444455666666667777888889999999998887654 3556667
Q ss_pred HHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHH
Q 011857 379 LLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMG 426 (476)
Q Consensus 379 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 426 (476)
+-.++..+.......-++.--.++-+..+..+..- .+.|-.+.++..
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 77777777666666666666666777766666555 367777777655
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.26 E-value=0.00026 Score=65.01 Aligned_cols=186 Identities=19% Similarity=0.155 Sum_probs=113.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChhhHHHHHHH
Q 011857 258 LSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMI-PFAFLAGTGVRVANELGAGNGKGAKFATIV 336 (476)
Q Consensus 258 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 336 (476)
-+......+....+...+...++.+..+ +++.|.|+....+.++...+ ..++.++..-..++..++ .+..++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~ 80 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSS 80 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHH
Confidence 3444555555566555566666666553 88999999999998887765 677888887777765432 2233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHH
Q 011857 337 SVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYF 416 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 416 (476)
.... ..+........ ..+...+..++ . +. ..........++..........+++.++.+.....++... +
T Consensus 81 ~~~~-~~~~~~i~~~~----~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (273)
T PF01943_consen 81 VLFL-LLIFSLIFLLI----LLIASFFGNPS-L-SL--ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-L 150 (273)
T ss_pred HHHH-HHHHHHHHHHH----HHHHHHcCCch-H-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3322 22222222222 22222333332 1 11 1112222222577888889999999999999988888886 5
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 417 VGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 417 ~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
..+.+...+.. ...+..+...+.. ++..+..++.....+|
T Consensus 151 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLF-LGSSLWGFLLGLV-ISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 55555555442 3344888999999 9998888877776664
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.94 E-value=0.0042 Score=56.26 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=105.6
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011857 276 LMLMTGNLPNPKLAVDALSICMTINGWEIMI-PFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMI 354 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (476)
...++++..+ +++.|.|+....+..+...+ ..++.+... + ..++|+++.++..+.........++...++
T Consensus 7 ~~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (251)
T PF13440_consen 7 FLILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAIL--- 77 (251)
T ss_pred HHHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445555553 88899999999988887765 344443332 2 233556666666666555444444443333
Q ss_pred hHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCch
Q 011857 355 YHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVK 434 (476)
Q Consensus 355 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~ 434 (476)
...+...+ ++++ ...++.+..+..++..........+++.+|.+.......... +..+.+...+.. ...+..
T Consensus 78 -~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 149 (251)
T PF13440_consen 78 -AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLW 149 (251)
T ss_pred -HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHH
Confidence 22333333 3332 334556677777888899999999999999999999888886 544334433332 234888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 435 GIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 435 g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
+..++.. ++.++..+......++
T Consensus 150 ~~~~~~~-~~~~~~~~~~~~~~~~ 172 (251)
T PF13440_consen 150 SILLAFI-ISALLALLISFYLLRR 172 (251)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcc
Confidence 8999999 8888888766654443
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.65 E-value=0.044 Score=49.75 Aligned_cols=167 Identities=10% Similarity=0.096 Sum_probs=113.7
Q ss_pred HhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCh
Q 011857 249 FSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNL-PNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNG 327 (476)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~ 327 (476)
....+++.++-+|+.+++....++-++.+.-+++- -+..+.+|+|+++..+.-++..+...+-+.....+. +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chh
Confidence 34677999999999999999999999988777653 333466899999999999988888888776665553 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----HhHH-HhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 011857 328 KGAKFATIVSVVTSSLIGLFFWLLIM-----IYHK-EIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSG 401 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 401 (476)
+ .++..... ...+...+.... -++. .+.+++.-|+++.+.+...+.++.+..+++++.....+++.=.+
T Consensus 82 s-rr~~vl~~----~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 S-RRKAVLCM----AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred h-hHHHHHHH----HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 2 22222222 223333222211 1222 34556677889999999999999999999999999998887556
Q ss_pred cchhhHHHHHHHHHHhhHHHHHHHH
Q 011857 402 WQSYVAYVNLGTYYFVGVPLGFLMG 426 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~~i~l~~~l~ 426 (476)
++......++... ...+....++.
T Consensus 157 ~s~iV~~aSI~~v-~~qvV~v~~ll 180 (345)
T PF07260_consen 157 HSWIVGSASIADV-IAQVVLVAILL 180 (345)
T ss_pred ceeEeehHHHHHH-HHHHHHHHHHH
Confidence 6666655555553 44444444443
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.039 Score=52.49 Aligned_cols=203 Identities=8% Similarity=0.028 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857 31 ESKKLWHIVGPSIFSRLATYSMSVVTIAFAGH---LGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY 107 (476)
Q Consensus 31 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~ 107 (476)
.-++..+......-..+.-.+.+--|.+++.- +.-++-|.|.++.++-++..-.+...+........+|...++++|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34556666666777778888888888888873 355677888888888888777788888877777888877666555
Q ss_pred hH---HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhH
Q 011857 108 ML---GVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMA 183 (476)
Q Consensus 108 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (476)
+. .++....+.....++++.+. +...+++.+.+.+++.=....+...+++.+..+++.+++.+..++..+.+..+-
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 44 45556666666777765553 466777777777654333334556789999999999999999999998776554
Q ss_pred HH---HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 011857 184 VA---WVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG 235 (476)
Q Consensus 184 ~~---~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 235 (476)
.- ....+.++...+++++++..+ |..|..+|+++...+-.+....+.++.
T Consensus 397 i~~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334445566778889998765 668888888888877777666666553
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=90.28 E-value=19 Score=35.03 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcC
Q 011857 326 NGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFT 364 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 364 (476)
+.++.++..+++.+.+.+......++..+..-|+...-.
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~ 127 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVY 127 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999998888888777777433
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.84 E-value=29 Score=32.96 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHH
Q 011857 305 MIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTI 384 (476)
Q Consensus 305 ~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 384 (476)
.+..++.-...-.++..+=+||.++....+.-...+....+..++..++ +.+++ .....+. ......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~--l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKI--LACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHH--HHHHHH
Confidence 3445555555555677766677777777777666666666665553211 11222 2223332 233444
Q ss_pred HHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011857 385 LLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMR 458 (476)
Q Consensus 385 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
+..+........+.+++|.|.....-.++. .+.+.++.++- ..+..|...+.- ++..+...+...+..|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~-IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLD-IGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 556667777888999999999887777775 78888888776 558999999999 9988877766554443
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=60.10 E-value=55 Score=23.59 Aligned_cols=41 Identities=17% Similarity=0.034 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHH
Q 011857 307 PFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLF 347 (476)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
..-++......+.+.+.+||.+++++.-+++.+++.+-...
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444455667788888999999999988887776544433
No 49
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=42.61 E-value=1.7e+02 Score=23.23 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=10.5
Q ss_pred HHHhhCChHHHHHHHHHH
Q 011857 454 VITMRCDWDKEAEKASKI 471 (476)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (476)
+......+|++.+|..++
T Consensus 118 w~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 118 WLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444567777776654
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=32.29 E-value=2.8e+02 Score=24.36 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=22.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 011857 104 KKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQ 143 (476)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 143 (476)
+++++....+..++...+++.++++++..+..++..+++.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 3445555555555555555555555566666676666653
No 51
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=30.79 E-value=1.4e+02 Score=18.66 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhCChHHHHHHHHHH
Q 011857 436 IWLGMIFGGTAVQTLILAV-ITMRCDWDKEAEKASKI 471 (476)
Q Consensus 436 ~~~a~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 471 (476)
+|.|+. ++.++....... ..++++..++.++...+
T Consensus 7 VW~sYg-~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r 42 (46)
T PF04995_consen 7 VWSSYG-VTALVLAGLIVWSLRRRRRLRKELKRLEAR 42 (46)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555 444443333332 23344566665554433
No 52
>PRK10739 putative antibiotic transporter; Provisional
Probab=26.89 E-value=4.2e+02 Score=22.92 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=37.5
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHH
Q 011857 314 TGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNE 375 (476)
Q Consensus 314 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 375 (476)
..|.+-..-++.+.++.|+..++.....+ .+.+.+.+.++.+.++|+-+-+....+..
T Consensus 20 ~ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGG 77 (197)
T PRK10739 20 NLPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGG 77 (197)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34555555555666777777666554444 44456888899999999866554555544
No 53
>PTZ00370 STEVOR; Provisional
Probab=26.87 E-value=1.4e+02 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=17.5
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHhhC--ChHHHHHH
Q 011857 429 FHQGVKGIWLGMIFGGTAVQTLILAVITMRC--DWDKEAEK 467 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 467 (476)
.++|+..+.+-.. .++..++..|.++|| .||++.++
T Consensus 255 ~Pygiaalvllil---~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVLLIL---AVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHHHHH---HHHHHHHHHHHHHhhcchhHHHHHh
Confidence 4566554444222 233333334444444 69888665
No 54
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=25.85 E-value=3.8e+02 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011857 326 NGKGAKFATIVSVVTSSLIGLFFWLLIM 353 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (476)
+.++.++..++...+++.++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888777777766665
No 55
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.88 E-value=2.4e+02 Score=26.49 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHH-hcCC-c------hhHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 011857 408 YVNLGTYYFVGVPLGFLMGWV-FHQG-V------KGIWLGMIFGGTAVQTLILAVITMRCDW 461 (476)
Q Consensus 408 ~~~~~~~~~~~i~l~~~l~~~-~~~g-~------~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
..++++ .+.+|+.++-+.+ -+++ + +|-++ .. +..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~~-~l-~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSI-FC-LLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHHH-HH-HHHHHHHHHHHHHHHhccc
Confidence 344444 3445777775543 1111 1 23333 33 3334444456667777777
No 56
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.76 E-value=7.5e+02 Score=24.79 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHH--HHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011857 372 AVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTY--YFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQT 449 (476)
Q Consensus 372 ~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~l~~~l~~~~~~g~~g~~~a~~~i~~~~~~ 449 (476)
...+.+.-++.+..+-++..+.....--.++.+.....+.... -++..|++-.+.. ..+|...+.+... +.-++..
T Consensus 132 ~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-s~~GW~sifY~~g-~~g~i~~ 209 (466)
T KOG2532|consen 132 LVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-SSLGWPSIFYVFG-IVGLIWF 209 (466)
T ss_pred HHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cCCCCchHHHHHH-HHHHHHH
Confidence 4566666677777777777777777777777777766554332 1566666666662 2489999998877 6666666
Q ss_pred HHHHHHHh
Q 011857 450 LILAVITM 457 (476)
Q Consensus 450 ~~~~~~~~ 457 (476)
++..++++
T Consensus 210 ~~w~~~~~ 217 (466)
T KOG2532|consen 210 ILWFLFYS 217 (466)
T ss_pred HHHHHHhc
Confidence 65555554
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.64 E-value=2.8e+02 Score=25.95 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=27.9
Q ss_pred CcchhhHHHHHHHHHHhhHHHHHHHHHH-------hcCCc-hhHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 011857 401 GWQSYVAYVNLGTYYFVGVPLGFLMGWV-------FHQGV-KGIWLGMIFGGTAVQTLILAVITMRCDW 461 (476)
Q Consensus 401 g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g~-~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
...+..-..++++ .+..|+.++-+.+ |.... +|-++. . ...++..+..+++++|++|
T Consensus 253 ~~N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~-l-~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAV-L-IVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHH-H-HHHHHHHHHHHHHHHHcCC
Confidence 3344444455555 3445666665533 11111 233333 3 3334444556777888887
No 58
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=21.80 E-value=3.1e+02 Score=19.69 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=24.7
Q ss_pred HHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 011857 95 TLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLL 128 (476)
Q Consensus 95 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (476)
..+-+.+.++|.+++++.-+++..++.+..++..
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5566667789999999888888877755544433
Done!