Query 011857
Match_columns 476
No_of_seqs 247 out of 2070
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.4E-49 4.7E-54 395.3 35.3 430 26-459 5-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.7E-19 9.1E-24 177.2 19.6 205 29-234 234-445 (460)
3 3o7q_A L-fucose-proton symport 92.0 8.2 0.00028 36.4 30.5 42 31-72 24-67 (438)
4 1pw4_A Glycerol-3-phosphate tr 91.1 10 0.00035 35.8 34.4 23 429-452 408-430 (451)
5 4aps_A DI-OR tripeptide H+ sym 88.9 17 0.00057 34.9 26.1 21 429-450 446-466 (491)
6 4ev6_A Magnesium transport pro 28.1 1.1E+02 0.0036 27.8 6.3 54 404-461 277-338 (339)
7 2k1k_A Ephrin type-A receptor 23.2 84 0.0029 18.0 2.9 19 211-229 14-32 (38)
8 2jwa_A Receptor tyrosine-prote 17.2 1.8E+02 0.0061 17.3 3.6 11 225-235 28-38 (44)
9 2knc_B Integrin beta-3; transm 14.0 3.1E+02 0.011 18.6 4.7 7 435-441 12-18 (79)
10 2l2t_A Receptor tyrosine-prote 12.5 2.5E+02 0.0086 16.6 3.8 6 229-234 31-36 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.4e-49 Score=395.34 Aligned_cols=430 Identities=20% Similarity=0.349 Sum_probs=394.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011857 26 RKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKK 105 (476)
Q Consensus 26 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~ 105 (476)
+..++..|++++.++|..++++...+.+.+|+.+++|+|++++|+++.+.++..+ ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3457889999999999999999999999999999999999999999999999887 677889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHH
Q 011857 106 YYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVA 185 (476)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (476)
+++.++.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++..++.++..+....++.+|+.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877667788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhccccc--c-cCCCcHHhHhcHHHHHHH
Q 011857 186 WVSLVALLVHIFVSWLFVYK-M---QLGLIATIHILNFSWWVLVFGLFGYVVFGGCPL--T-WTGFSAEAFSGLWEFVKL 258 (476)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 258 (476)
..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++.++++... + ++++...+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 689999999999999999998888877652211 1 122223346788999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 011857 259 SAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSV 338 (476)
Q Consensus 259 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 338 (476)
|.|.++++..+.+...+++.++++++ ++++++|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhh
Q 011857 339 VTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVG 418 (476)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 418 (476)
++.+.++++.++++.++++++..+|.+|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++.+.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHH----hc-CCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857 419 VPLGFLMGWV----FH-QGVKGIWLGMIFGGTAVQTLILAVITMRC 459 (476)
Q Consensus 419 i~l~~~l~~~----~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+|+++++... ++ +|..|+|+++. +++.+..++..++++|+
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999944 34 99999999999 99999998777666654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=2.7e-19 Score=177.19 Aligned_cols=205 Identities=13% Similarity=0.097 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011857 29 WVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYM 108 (476)
Q Consensus 29 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~~ 108 (476)
++..|++++.++|..++++...+...+|+.+++++|++++|+++++.++.++ ...+..+++++..|.+++++|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5678899999999999999999999999999999999999999999999999 778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHHH
Q 011857 109 LGVYMQRSWIVLFTCCVLLLP-LYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWV 187 (476)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (476)
.++..+.+..+....+++..+ +..+.+++..++..|++..+.+..++++..++.++.++.....+.+++.||++.++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 999999999999999988885 5788889999998888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhh----cC-CccchHHHHHHHHHHHHHHHHHHHHHh
Q 011857 188 SLVAL-LVHIFVSWLFVYK----MQ-LGLIATIHILNFSWWVLVFGLFGYVVF 234 (476)
Q Consensus 188 ~~~~~-~~~i~l~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~ 234 (476)
++++. ++++++++++.+. ++ +|..|+++++.++..+..++..+..+|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 9999999999986 56 899999999999999988876655554
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.03 E-value=8.2 Score=36.36 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhhHHHHH
Q 011857 31 ESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHL--GDLELAAIS 72 (476)
Q Consensus 31 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l--g~~~~g~~~ 72 (476)
..+.+.....-.++..+...........+..++ ++.+.|...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444555555555555555555555555555 444544443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.11 E-value=10 Score=35.76 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=12.8
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHH
Q 011857 429 FHQGVKGIWLGMIFGGTAVQTLIL 452 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~~~ 452 (476)
...|....++... +..++..++.
T Consensus 408 ~~~g~~~~~~~~~-~~~~~~~~~~ 430 (451)
T 1pw4_A 408 DFFGWDGGFMVMI-GGSILAVILL 430 (451)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHH
T ss_pred HhcCcHHHHHHHH-HHHHHHHHHH
Confidence 4567666666555 4444444433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=88.90 E-value=17 Score=34.86 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=9.5
Q ss_pred hcCCchhHHHHHHHHHHHHHHH
Q 011857 429 FHQGVKGIWLGMIFGGTAVQTL 450 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~ 450 (476)
.+.+....+.... ....+..+
T Consensus 446 ~~~~~~~~~~~~~-~~~~~~~~ 466 (491)
T 4aps_A 446 NAKSEVAYFSYFG-LGSVVLGI 466 (491)
T ss_dssp GGSSTTHHHHHTH-HHHHHHHH
T ss_pred hcccHHHHHHHHH-HHHHHHHH
Confidence 3445555555444 43344333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.07 E-value=1.1e+02 Score=27.81 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHH-------hcCC-chhHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 011857 404 SYVAYVNLGTYYFVGVPLGFLMGWV-------FHQG-VKGIWLGMIFGGTAVQTLILAVITMRCDW 461 (476)
Q Consensus 404 ~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g-~~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
+..-..++++ .+-+|+.++-+.+ |... -+|.|+.. ...++.+++.+++++|++|
T Consensus 277 ~~mk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l--~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 277 QIMKILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVM--ALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHH--HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 3333445544 4556777776643 1111 23444433 3345555556777888888
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.22 E-value=84 Score=17.97 Aligned_cols=19 Identities=26% Similarity=0.057 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 011857 211 IATIHILNFSWWVLVFGLF 229 (476)
Q Consensus 211 ~g~a~a~~i~~~~~~~~~~ 229 (476)
.|..++.+++-.+...+.+
T Consensus 14 AGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4455555544444443333
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.16 E-value=1.8e+02 Score=17.29 Aligned_cols=11 Identities=0% Similarity=-0.511 Sum_probs=5.3
Q ss_pred HHHHHHHHHhc
Q 011857 225 VFGLFGYVVFG 235 (476)
Q Consensus 225 ~~~~~~~~~~~ 235 (476)
.+....+.+|+
T Consensus 28 ~l~~~~~~RRR 38 (44)
T 2jwa_A 28 GVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhheehh
Confidence 33344555554
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.02 E-value=3.1e+02 Score=18.59 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 011857 435 GIWLGMI 441 (476)
Q Consensus 435 g~~~a~~ 441 (476)
++..+..
T Consensus 12 ~Iv~gvi 18 (79)
T 2knc_B 12 VVLLSVM 18 (79)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3333333
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.46 E-value=2.5e+02 Score=16.64 Aligned_cols=6 Identities=33% Similarity=0.024 Sum_probs=2.5
Q ss_pred HHHHHh
Q 011857 229 FGYVVF 234 (476)
Q Consensus 229 ~~~~~~ 234 (476)
+++.++
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 344444
Done!