Query 011857
Match_columns 476
No_of_seqs 247 out of 2070
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 16:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011857.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011857hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 44.5 89 0.0064 26.5 37.6 27 429-456 405-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 17.3 2.6E+02 0.019 23.1 20.2 26 208-233 407-432 (447)
3 d1m56d_ f.23.8.1 (D:) Bacteria 6.8 2E+02 0.015 15.3 4.5 34 322-355 4-37 (42)
4 d1nkzb_ f.3.1.1 (B:) Light-har 6.7 2E+02 0.015 15.1 3.9 33 326-358 7-39 (41)
5 d1pv7a_ f.38.1.2 (A:) Lactose 4.6 7.3E+02 0.053 19.2 37.6 64 33-104 7-73 (417)
6 d2iuba2 f.17.3.1 (A:286-349) M 4.5 2.4E+02 0.018 16.4 2.4 7 418-424 16-22 (64)
7 d1ijdb_ f.3.1.1 (B:) Light-har 3.0 4.2E+02 0.03 13.7 3.7 31 326-356 8-38 (40)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.7 1E+03 0.076 17.9 8.1 38 316-353 183-220 (290)
9 d1j1va_ a.4.12.2 (A:) Chromoso 2.5 6.3E+02 0.046 15.7 3.2 32 306-337 40-71 (94)
10 d1qled_ f.23.8.1 (D:) Bacteria 2.5 5.1E+02 0.037 13.8 5.1 34 322-355 5-38 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=44.50 E-value=89 Score=26.51 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=15.6
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011857 429 FHQGVKGIWLGMIFGGTAVQTLILAVIT 456 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~~~~~~~ 456 (476)
..+|..+..+... ...++..++.....
T Consensus 405 ~~~g~~~~~~~~~-~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 405 DFFGWDGGFMVMI-GGSILAVILLIVVM 431 (447)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5678777766655 55555555444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.27 E-value=2.6e+02 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=12.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH
Q 011857 208 LGLIATIHILNFSWWVLVFGLFGYVV 233 (476)
Q Consensus 208 ~g~~g~a~a~~i~~~~~~~~~~~~~~ 233 (476)
.|..+..+......++..++......
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46555555554444444444444333
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.83 E-value=2e+02 Score=15.35 Aligned_cols=34 Identities=6% Similarity=-0.061 Sum_probs=20.4
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011857 322 LGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIY 355 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (476)
.|+=|.+.-++.+.--+++....++.+...++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777666666666655554444443
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=6.68 E-value=2e+02 Score=15.12 Aligned_cols=33 Identities=9% Similarity=-0.123 Sum_probs=24.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011857 326 NGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKE 358 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (476)
+.++..+......+....+++..=++.+...|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 356777888888888888888777766666554
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.56 E-value=7.3e+02 Score=19.25 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 011857 33 KKLWHIVGPSIFSRLATYSMSVVTIAFAGH-L--GDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAK 104 (476)
Q Consensus 33 k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-l--g~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~ 104 (476)
|+.+.++.-.+...+........-..++.+ + ++.++|.......+... +..-..-.+++.+|++
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~--------i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSL--------LFQPLFGLLSDKLGLR 73 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------HTHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCch
Confidence 455566666665555555444343444433 3 45555554443333333 2222223556666644
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.54 E-value=2.4e+02 Score=16.36 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 011857 418 GVPLGFL 424 (476)
Q Consensus 418 ~i~l~~~ 424 (476)
-+|+.++
T Consensus 16 flP~t~i 22 (64)
T d2iuba2 16 FMPLTFI 22 (64)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.96 E-value=4.2e+02 Score=13.75 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011857 326 NGKGAKFATIVSVVTSSLIGLFFWLLIMIYH 356 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (476)
+-++..+......+....+++..=++.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 3567777788888887777777665555443
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.71 E-value=1e+03 Score=17.92 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=26.7
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011857 316 VRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIM 353 (476)
Q Consensus 316 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (476)
-..++..|+++.+..++...-.++=+...+...+....
T Consensus 183 ~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~ 220 (290)
T d2r6gg1 183 EEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA 220 (290)
T ss_dssp HHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Confidence 34677888888888888877777777666666554443
No 9
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.54 E-value=6.3e+02 Score=15.75 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 011857 306 IPFAFLAGTGVRVANELGAGNGKGAKFATIVS 337 (476)
Q Consensus 306 i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 337 (476)
+..=......+.+++.+|.+|+.-+-+.+++.
T Consensus 40 L~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 40 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Confidence 33445556778899999888888877777663
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=2.51 E-value=5.1e+02 Score=13.78 Aligned_cols=34 Identities=3% Similarity=0.028 Sum_probs=19.5
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011857 322 LGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIY 355 (476)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (476)
.|+=|.+.-++.+.--+++....++.+...++++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666555554444443
Done!