BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011858
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 56/248 (22%)
Query: 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDR 182
+LH L Y S G++E AVP ++A+ + T G DH + ++L V R
Sbjct: 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP--------DVATMLNILALVYR 80
Query: 183 SIGCYE-------EGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEI 235
Y+ + L I+ + LG+ P V T LA + + ++ +AE LCK+ LEI
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 236 HRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIG 295
+ + +AL+C+ +G YE
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYE------------------------------ 170
Query: 296 NIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKS-YCE 354
E + YQ+AL ++++ G + P+VA LA Y + GK +++++ Y E
Sbjct: 171 ----------EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220
Query: 355 NALRIYAR 362
R + R
Sbjct: 221 ILTRAHER 228
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 56/244 (22%)
Query: 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG 178
D A L++LA +Y K++EA L A+++ + T G DH
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH------------------- 81
Query: 179 QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238
P V T LA + + ++ +AE LCK+ LEI
Sbjct: 82 ------------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117
Query: 239 HSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG---QDNEVAAIDVSIG 295
+ + +AL+C+ +G E +E+ ++ + A D VA ++
Sbjct: 118 VLGKFHPDVAKQLNNLALLCQNQGKAE-EVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Query: 296 NIYLSLCRFDEAVFSYQKALTV-----FKSSKGDNHPSVASVFVRLADLYHRTGKLRESK 350
+ YL ++ +A Y++ LT F S GDN P +++ + K R+S
Sbjct: 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP----IWMHAEEREESKDKRRDSA 232
Query: 351 SYCE 354
Y E
Sbjct: 233 PYGE 236
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 228 LCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN--GQDN 285
LCK+ LE S + + ++AL+ + Y+ A HL+ ++A+ G+D+
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA-HLLNDALAIREKTLGKDH 81
Query: 286 -EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG 344
VAA ++ +Y ++ EA ++AL + + G HP VA LA L G
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 345 KLRESKSYCENALRIYA 361
K E + Y AL IYA
Sbjct: 142 KAEEVEYYYRRALEIYA 158
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 56/244 (22%)
Query: 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG 178
D A L++LA +Y K++EA L A+++ + T G DH
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH------------------- 81
Query: 179 QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238
P V T LA + + ++ +AE LCK+ LEI
Sbjct: 82 ------------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117
Query: 239 HSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG---QDNEVAAIDVSIG 295
+ + +AL+C+ +G E +E+ ++ + A D VA ++
Sbjct: 118 VLGKFHPDVAKQLSNLALLCQNQGKAE-EVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Query: 296 NIYLSLCRFDEAVFSYQKALTV-----FKSSKGDNHPSVASVFVRLADLYHRTGKLRESK 350
+ YL ++ +A Y++ LT F S GDN P +++ + K R+S
Sbjct: 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP----IWMHAEEREESKDKRRDSA 232
Query: 351 SYCE 354
Y E
Sbjct: 233 PYGE 236
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 228 LCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN--GQDN 285
LCK+ LE S + + ++AL+ + Y+ A HL+ ++A+ G+D+
Sbjct: 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA-HLLNDALAIREKTLGKDH 81
Query: 286 -EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG 344
VAA ++ +Y ++ EA ++AL + + G HP VA LA L G
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQG 141
Query: 345 KLRESKSYCENALRIYA 361
K E + Y AL IYA
Sbjct: 142 KAEEVEYYYRRALEIYA 158
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 177 LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236
LG G Y+E ++ +AL E DPR E L A+ + +D+A E +K LE+
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL- 64
Query: 237 RAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGN 296
+P S E + + +GDY+ A+E+ A D A ++GN
Sbjct: 65 ----DPRSAEAWYN---LGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGN 111
Query: 297 IYLSLCRFDEAVFSYQKAL 315
Y +DEA+ YQKAL
Sbjct: 112 AYYKQGDYDEAIEYYQKAL 130
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352
++GN Y +DEA+ YQKAL + P A + L + Y++ G E+ Y
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEY 57
Query: 353 CENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412
+ AL + R A + Y + +EA++ Q+A++L
Sbjct: 58 YQKALELDPRS---------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPR 101
Query: 413 IAGIEARMGVMFYMVGRYEEARSSFESAI 441
A +G +Y G Y+EA ++ A+
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQV 180
A + + L Y G ++EA+ +KA+ + R A+ + LG+ G
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAE-------AWYNLGNAYYKQGDY 85
Query: 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEI 235
D +I Y++ L E DPR E L A+ + +D+A E +K LE+
Sbjct: 86 DEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352
++GN Y +DEA+ YQKAL ++ P+ A + L + Y++ G E+ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELY--------PNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 353 CENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412
+ AL +Y A + Y + +EA++ Q+A++L + +
Sbjct: 66 YQKALELYPNN---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQN 116
Query: 413 IAGIEARMG 421
+ + + G
Sbjct: 117 LGNAKQKQG 125
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 330 ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP 389
A + L + Y++ G E+ Y + AL +Y A + Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN---------AEAWYNLGNAYYKQGDY 59
Query: 390 EEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449
+EA++ Q+A++L + A +G +Y G Y+EA ++ A+ + E
Sbjct: 60 DEAIEYYQKALELYPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Query: 450 RK 451
K
Sbjct: 113 AK 114
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISV-PDVTRGADHALAKFSGYMQLGDTCSMLGQ 179
A + + L Y G ++EA+ +KA+ + P+ + LG+ G
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN----------NAEAWYNLGNAYYKQGD 58
Query: 180 VDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239
D +I Y++ L++ P E L A+ + +D+A E +K LE++ +
Sbjct: 59 YDEAIEYYQKALELY--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Query: 240 SE 241
+E
Sbjct: 111 AE 112
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 134 LGKF-EEAVPALEKAISVPD-----VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCY 187
+G+F EE AL+ A+ + VT D A A+ + LG+T +LG ++ +
Sbjct: 152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAH 210
Query: 188 EEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEE 247
E+ L I E + R + L A++ +F+ A E KKTL + R +
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSN--LGNAYIFLGEFETASEYYKKTLLLAR---------Q 259
Query: 248 SADRRLMALICEAKG-------DYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYL 299
DR + A C + G DYE A++ HL ++A N + E A S+GN Y
Sbjct: 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC-WSLGNAYT 318
Query: 300 SLCRFDEAVFSYQKALTV 317
+L D+A+ +K L +
Sbjct: 319 ALGNHDQAMHFAEKHLEI 336
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 127 LAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGC 186
L Y LG+FE A +K + + + D A+ S Y LG+T ++L +++I
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCY-SLGNTYTLLQDYEKAIDY 289
Query: 187 YEEGLKIQIEALGETDPRVGE--TCRYLAEAHVQAMQFDKAEELCKKTLEIHR 237
+ + L I E + R+GE C L A+ D+A +K LEI R
Sbjct: 290 HLKHLAIA----QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 124 LHVLAAIYCSLGK----FEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ 179
L L+AIY LG + ALE + R L + LG+T +LG
Sbjct: 43 LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102
Query: 180 VDRSIGCYEEGLKIQIEALGETDPRVGE 207
D +I C + L I E + +VGE
Sbjct: 103 FDEAIVCCQRHLDISR----ELNDKVGE 126
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 34/192 (17%)
Query: 263 DYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321
DY ALE H ++A Q E A ++GN L FDEA+ Q+ L + S
Sbjct: 62 DYAKALEYHHHDLTLARTIGDQLGEAKA-SGNLGNTLKVLGNFDEAIVCCQRHLDI--SR 118
Query: 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP---GTTAEEIAGGLTE 378
+ ++ A L ++YH GK + P P G EE+
Sbjct: 119 ELNDKVGEARALYNLGNVYHAKGK-------------SFGCPGPQDVGEFPEEVR----- 160
Query: 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438
A+ +VD EE L L + L D+ Q +G Y++G + +A + E
Sbjct: 161 -DALQAAVDFYEENLSL----VTALGDRAAQGRAF----GNLGNTHYLLGNFRDAVIAHE 211
Query: 439 SAIAKLRASGER 450
+ + G++
Sbjct: 212 QRLLIAKEFGDK 223
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 43/250 (17%)
Query: 111 AAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV-PDVTRGADHALAKFSGYMQ 169
A E +P ++A++ L ++ + G+ A+ EKA+++ P+ Y+
Sbjct: 161 AIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------LDAYIN 208
Query: 170 LGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELC 229
LG+ DR++ Y L + P LA + + D A +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 230 KKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAA 289
++ +E+ + H A + + + EA+ Y AL + ++ N +A
Sbjct: 261 RRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL------NNLAN 313
Query: 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRES 349
I GNI +EAV Y+KAL VF P A+ LA + + GKL+E+
Sbjct: 314 IKREQGNI-------EEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEA 358
Query: 350 KSYCENALRI 359
+ + A+RI
Sbjct: 359 LMHYKEAIRI 368
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 262 GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321
GD+EAA H M + DN + + + +I+ R D + F +
Sbjct: 13 GDFEAAERH----CMQLWRQEPDN--TGVLLLLSSIHFQCRRLDRSAH--------FSTL 58
Query: 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA 381
+P +A + L ++Y G+L+E+ + +ALR+ +P + G ++A
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KP-------DFIDGYINLAA 109
Query: 382 IYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441
+ + E A++ A++ D + + + +G + +GR EEA++ + AI
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPD-------LYCVRSDLGNLLKALGRLEEAKACYLKAI 162
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAE 226
+ LG+T +LG ++ +E+ L I E + R+ + L A++ +F+ A
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN--LGNAYIFLGEFETAS 69
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKG-------DYEAALE-HLVLASMAM 278
E KKTL + R + DR + A C + G DYE A++ HL ++A
Sbjct: 70 EYYKKTLLLAR---------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120
Query: 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317
+ E A S+GN Y +L D+A+ +K L +
Sbjct: 121 ELKDRIGEGRAC-WSLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 127 LAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGC 186
L Y LG+FE A +K + + + D A+ S Y LG+T ++L +++I
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCY-SLGNTYTLLQDYEKAIDY 111
Query: 187 YEEGLKIQIEALGETDPRVGE--TCRYLAEAHVQAMQFDKAEELCKKTLEIHR 237
+ + L I E R+GE C L A+ D+A +K LEI R
Sbjct: 112 HLKHLAIA----QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG 344
N +A I GNI +EAV Y+KAL VF P A+ LA + + G
Sbjct: 13 NNLANIKREQGNI-------EEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQG 57
Query: 345 KLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404
KL+E+ + + A+RI + A + + + + + + AL+ RA+++
Sbjct: 58 KLQEALMHYKEAIRI---------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 405 DKPGQQSTIAGIEARMGVMFYMVGRYEEA 433
S +A I G + + Y A
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTA 137
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 135 GKFEEAV-PALEKAISVPD-----VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYE 188
G+F E V AL+ A+ + + VT D A A+ + LG+T +LG ++ +E
Sbjct: 151 GEFPEDVRNALQAAVDLYEENLSLVTALGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHE 209
Query: 189 EGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEES 248
+ L I E + R + L A++ +F+ A E KKTL + R +
Sbjct: 210 QRLLIAKEFGDKAAERRAYSN--LGNAYIFLGEFETASEYYKKTLLLAR---------QL 258
Query: 249 ADRRLMALICEAKG-------DYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300
DR + A C + G DYE A++ HL ++A + E A S+GN Y +
Sbjct: 259 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC-WSLGNAYTA 317
Query: 301 LCRFDEAVFSYQKALTV 317
L D+A+ +K L +
Sbjct: 318 LGNHDQAMHFAEKHLEI 334
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 127 LAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGC 186
L Y LG+FE A +K + + + D A+ S Y LG+T ++L +++I
Sbjct: 231 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCY-SLGNTYTLLQDYEKAIDY 287
Query: 187 YEEGLKIQIEALGETDPRVGE--TCRYLAEAHVQAMQFDKAEELCKKTLEIHR 237
+ + L I E R+GE C L A+ D+A +K LEI R
Sbjct: 288 HLKHLAIAQE----LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 336
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 124 LHVLAAIYCSLGK----FEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ 179
L L+AIY LG + ALE + R L + LG+T +LG
Sbjct: 41 LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 100
Query: 180 VDRSIGCYEEGLKIQIEALGETDPRVGE 207
D +I C + L I E + +VGE
Sbjct: 101 FDEAIVCCQRHLDISR----ELNDKVGE 124
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 263 DYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321
DY ALE H ++A Q E A ++GN L FDEA+ Q+ L + S
Sbjct: 60 DYAKALEYHHHDLTLARTIGDQLGEAKA-SGNLGNTLKVLGNFDEAIVCCQRHLDI--SR 116
Query: 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA---EEIAGGLTE 378
+ ++ A L ++YH GK + P P T E++
Sbjct: 117 ELNDKVGEARALYNLGNVYHAKGK-------------SFGCPGPQDTGEFPEDVR----- 158
Query: 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438
+A+ +VD EE L L + L D+ Q +G Y++G + +A + E
Sbjct: 159 -NALQAAVDLYEENLSL----VTALGDRAAQGRAF----GNLGNTHYLLGNFRDAVIAHE 209
Query: 439 SAIAKLRASGER 450
+ + G++
Sbjct: 210 QRLLIAKEFGDK 221
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 31/190 (16%)
Query: 262 GDYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320
GDY A++ H ++A N + E A ++GN + RFDEA ++ LT+ +
Sbjct: 100 GDYNKAMQYHKHDLTLAKSMNDRLGE-AKSSGNLGNTLKVMGRFDEAAICCERHLTLAR- 157
Query: 321 SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEIS 380
GD S L ++YH GK ++ PG +++ LT
Sbjct: 158 QLGDR-LSEGRALYNLGNVYHAKGKHLGQRN-------------PGKFGDDVKEALTRAV 203
Query: 381 AIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440
Y +E LKL M+ L D+ G Q G +G +Y++G ++ A +
Sbjct: 204 EFY------QENLKL----MRDLGDR-GAQGRACG---NLGNTYYLLGDFQAAIEHHQER 249
Query: 441 IAKLRASGER 450
+ R G+R
Sbjct: 250 LRIAREFGDR 259
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 180 VDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239
+ R++ Y+E LK+ + LG+ + G C L + F A E ++ L I R
Sbjct: 199 LTRAVEFYQENLKL-MRDLGDRGAQ-GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256
Query: 240 SEPASLEESADRRLMALICEAK---GDYEAALEHLVLASMAMIANGQDNEVAAID-VSIG 295
+ A A+RR + + + G +E A EH ++A+ + EV A S+G
Sbjct: 257 GDRA-----AERRANSNLGNSHIFLGQFEDAAEHYK-RTLALAVELGEREVEAQSCYSLG 310
Query: 296 NIYLSLCRFDEAVFSYQKALTV 317
N Y L F+ A+ + + L +
Sbjct: 311 NTYTLLHEFNTAIEYHNRHLAI 332
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 135 GKFEEAV-PALEKAISVPD-----VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYE 188
G+F E V AL+ A+ + + VT D A A+ + LG+T +LG ++ +E
Sbjct: 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHE 207
Query: 189 EGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEES 248
+ L I E + R + L A++ +F+ A E KKTL + R +
Sbjct: 208 QRLLIAKEFGDKAAERRAYSN--LGNAYIFLGEFETASEYYKKTLLLAR---------QL 256
Query: 249 ADRRLMALICEAKG-------DYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300
DR + A C + G DYE A++ HL ++A + E A S+GN Y +
Sbjct: 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC-WSLGNAYTA 315
Query: 301 LCRFDEAVFSYQKALTV 317
L D+A+ +K L +
Sbjct: 316 LGNHDQAMHFAEKHLEI 332
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 127 LAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGC 186
L Y LG+FE A +K + + + D A+ S Y LG+T ++L +++I
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCY-SLGNTYTLLQDYEKAIDY 285
Query: 187 YEEGLKIQIEALGETDPRVGE--TCRYLAEAHVQAMQFDKAEELCKKTLEIHR 237
+ + L I E R+GE C L A+ D+A +K LEI R
Sbjct: 286 HLKHLAIAQE----LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 124 LHVLAAIYCSLGK----FEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ 179
L L+AIY LG + ALE + R L + LG+T +LG
Sbjct: 39 LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98
Query: 180 VDRSIGCYEEGLKIQIEALGETDPRVGE 207
D +I C + L I E + +VGE
Sbjct: 99 FDEAIVCCQRHLDISR----ELNDKVGE 122
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 263 DYEAALE-HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321
DY ALE H ++A Q E A ++GN L FDEA+ Q+ L + S
Sbjct: 58 DYAKALEYHHHDLTLARTIGDQLGEAKA-SGNLGNTLKVLGNFDEAIVCCQRHLDI--SR 114
Query: 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA---EEIAGGLTE 378
+ ++ A L ++YH GK + P P T E++
Sbjct: 115 ELNDKVGEARALYNLGNVYHAKGK-------------SFGCPGPQDTGEFPEDVR----- 156
Query: 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438
+A+ +VD EE L L + L D+ Q +G Y++G + +A + E
Sbjct: 157 -NALQAAVDLYEENLSL----VTALGDRAAQGRAF----GNLGNTHYLLGNFRDAVIAHE 207
Query: 439 SAIAKLRASGER 450
+ + G++
Sbjct: 208 QRLLIAKEFGDK 219
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352
++GN Y +DEA+ YQKAL + P+ A + L + Y++ G E+ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 353 CENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412
+ AL + A + Y + +EA++ Q+A++L + +
Sbjct: 66 YQKALELDPNN---------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Query: 413 IAGIEARMG 421
+ + + G
Sbjct: 117 LGNAKQKQG 125
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQV 180
A + + L Y G ++EA+ +KA+ + A + LG+ G
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA---------WYNLGNAYYKQGDY 59
Query: 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHS 240
D +I Y++ L E DP E L A+ + +D+A E +K LE+ ++
Sbjct: 60 DEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111
Query: 241 E 241
E
Sbjct: 112 E 112
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 177 LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236
LG G Y+E ++ +AL E DP E L A+ + +D+A E +K LE+
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 237 RAHSEPASLEESADRRLMALICEAKGDYEAALEH 270
++E +A + +GDY+ A+E+
Sbjct: 74 PNNAEAWYNLGNAYYK--------QGDYDEAIEY 99
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352
++GN Y +DEA+ YQKAL + P+ A + L + Y++ G E+ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 353 CENALRI 359
+ AL +
Sbjct: 66 YQKALEL 72
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352
++GN Y +DEA+ YQKAL + P A + L + Y++ G E+ Y
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEY 59
Query: 353 CENALRIYAR 362
+ AL + R
Sbjct: 60 YQKALELDPR 69
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 177 LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEI 235
LG G Y+E ++ +AL E DPR E L A+ + +D+A E +K LE+
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 66
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSL-HVLAAI 130
P++ P + DT+ S E P + +D I+ +SF+ + PSL S+ VL +I
Sbjct: 628 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSI 687
Query: 131 YCSLGKFEEAVPALEKAISVPDVTRGADHAL-AKFSG 166
L KF+ ++ +S+ +T D+ L +KF+G
Sbjct: 688 ---LKKFQVSIEGFIFLLSL--ITSQQDYELQSKFAG 719
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSL-HVLAAI 130
P++ P + DT+ S E P + +D I+ +SF+ + PSL S+ VL +I
Sbjct: 626 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSI 685
Query: 131 YCSLGKFEEAVPALEKAISVPDVTRGADHAL-AKFSG 166
L KF+ ++ +S+ +T D+ L +KF+G
Sbjct: 686 ---LKKFQVSIEGFIFLLSL--ITSQQDYELQSKFAG 717
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSL-HVLAAI 130
P++ P + DT+ S E P + +D I+ +SF+ + PSL S+ VL +I
Sbjct: 628 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSI 687
Query: 131 YCSLGKFEEAVPALEKAISVPDVTRGADHAL-AKFSG 166
L KF+ ++ +S+ +T D+ L +KF+G
Sbjct: 688 ---LKKFQVSIEGFIFLLSL--ITSQQDYELQSKFAG 719
>pdb|2XLB|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|G Chain G, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|H Chain H, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|I Chain I, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|J Chain J, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|K Chain K, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|L Chain L, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
Length = 320
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 97 DYAIRASKSFERCAAAEAEPSL---DYAM-SLHVLAAIYCSLGKFEEAVPALEKAISVPD 152
D+A KS E EAEP+L DY + + V Y S G +E +VPD
Sbjct: 23 DFADFWKKSLEELRQVEAEPTLESYDYPVKGVKVYRLTYQSFGH-----SKIEGFYAVPD 77
Query: 153 VTRGADHALAKFSGY 167
T G AL +F GY
Sbjct: 78 QT-GPHPALVRFHGY 91
>pdb|2XLC|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
Length = 320
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 97 DYAIRASKSFERCAAAEAEPSL---DYAM-SLHVLAAIYCSLGKFEEAVPALEKAISVPD 152
D+A KS E EAEP+L DY + + V Y S G +E +VPD
Sbjct: 23 DFADFWKKSLEELRQVEAEPTLESYDYPVKGVKVYRLTYQSFGH-----SKIEGFYAVPD 77
Query: 153 VTRGADHALAKFSGY 167
T G AL +F GY
Sbjct: 78 QT-GPHPALVRFHGY 91
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352
++GN Y + +A+ YQKAL + P+ AS + L + Y++ G +++ Y
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALEL--------DPNNASAWYNLGNAYYKQGDYQKAIEY 65
Query: 353 CENALRI 359
+ AL +
Sbjct: 66 YQKALEL 72
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 262 GDYEAALEHLVLASMAMIANGQDNEVAAID-VSIGNIYLSLCRFDEAVFSYQKALTVFKS 320
GDYE A E A ++N+ AI ++ N+ S+ + A+ Y KAL +
Sbjct: 37 GDYEKAAEAFTKAI-------EENKEDAIPYINFANLLSSVNELERALAFYDKALEL--- 86
Query: 321 SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEIS 380
S A+ + ++Y +E+K E ALR E +
Sbjct: 87 -----DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR---------AGMENGDLFYMLG 132
Query: 381 AIYESVDEPEEALKLLQRAMKLLED 405
+ +++P+ AL LQRA++L E+
Sbjct: 133 TVLVKLEQPKLALPYLQRAVELNEN 157
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 126 VLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIG 185
VL Y + K++ AVP L K V F+ +LG LG+ D +I
Sbjct: 81 VLGLTYVQVQKYDLAVPLLVKVAEANPVN---------FNVRFRLGVALDNLGRFDEAID 131
Query: 186 CYEEGLKIQIEALGETDPRVGETCRYLAE------AHVQAM-QFDKAEELCKKT 232
++ L ++ P G+ R +A +H +A+ F KA EL +++
Sbjct: 132 SFKIALGLR--------PNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDERS 177
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
Length = 596
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263
EL +K ++ HRA+++ A E+ DR L+ L +A D
Sbjct: 465 ELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIED 501
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263
EL +K ++ HRA+++ A E+ DR L+ L +A D
Sbjct: 486 ELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIED 522
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263
EL +K ++ HRA+++ A E+ DR L+ L +A D
Sbjct: 468 ELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIED 504
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263
EL +K ++ HRA+++ A E+ DR L+ L +A D
Sbjct: 465 ELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIED 501
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263
EL +K ++ HRA+++ A E+ DR L+ L +A D
Sbjct: 468 ELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIED 504
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263
EL +K ++ HRA+++ A E+ DR L+ L +A D
Sbjct: 486 ELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIED 522
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 307 AVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366
A+ Y ALT+F+ + +N P LA + G + + EN + AR
Sbjct: 17 ALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPA---LENGKTLVAR---- 68
Query: 367 TTAEEIAGGLTEIS----AIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGV 422
GG +S A+Y ++ E L++A+ +L+D A + + G+
Sbjct: 69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 423 MFYMVGRYEEARSSFESAIA 442
++ ++G ++A +S + A+A
Sbjct: 127 VYALLGERDKAEASLKQALA 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,198,991
Number of Sequences: 62578
Number of extensions: 447751
Number of successful extensions: 1251
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 92
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)