Query 011858
Match_columns 476
No_of_seqs 1526 out of 2858
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 06:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1E-38 2.3E-43 276.1 20.7 343 65-473 106-473 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 7.6E-38 1.6E-42 270.8 21.8 335 68-466 143-500 (966)
3 KOG1840 Kinesin light chain [C 100.0 2.1E-29 4.5E-34 223.8 42.5 375 72-454 85-490 (508)
4 KOG1840 Kinesin light chain [C 100.0 9.6E-30 2.1E-34 226.0 38.7 290 116-408 194-485 (508)
5 TIGR00990 3a0801s09 mitochondr 100.0 2.3E-30 5.1E-35 247.4 35.1 340 74-474 126-560 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 5.8E-29 1.3E-33 237.9 33.0 327 70-449 156-577 (615)
7 KOG1130 Predicted G-alpha GTPa 100.0 5E-28 1.1E-32 200.4 21.8 315 125-454 21-355 (639)
8 PRK15174 Vi polysaccharide exp 100.0 8.9E-27 1.9E-31 221.9 31.4 318 64-448 65-386 (656)
9 PRK15174 Vi polysaccharide exp 100.0 1E-25 2.2E-30 214.6 30.8 327 72-473 39-369 (656)
10 KOG1130 Predicted G-alpha GTPa 100.0 2.8E-26 6.1E-31 190.1 23.2 334 77-431 19-372 (639)
11 PRK11447 cellulose synthase su 100.0 1.7E-25 3.7E-30 227.7 31.8 351 80-474 274-729 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 7.5E-25 1.6E-29 222.9 31.6 338 68-474 526-889 (899)
13 PRK11788 tetratricopeptide rep 99.9 1.6E-23 3.5E-28 191.0 37.1 310 75-444 35-348 (389)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-24 7.8E-29 217.9 33.7 311 70-441 562-898 (899)
15 KOG0547 Translocase of outer m 99.9 3.6E-24 7.7E-29 181.4 26.7 247 164-450 326-573 (606)
16 PRK11447 cellulose synthase su 99.9 5.3E-24 1.1E-28 216.9 32.9 317 77-442 353-739 (1157)
17 KOG1126 DNA-binding cell divis 99.9 4.6E-24 9.9E-29 187.9 21.9 288 98-445 334-622 (638)
18 PRK11788 tetratricopeptide rep 99.9 2.5E-22 5.4E-27 183.2 30.9 278 121-444 35-312 (389)
19 KOG2002 TPR-containing nuclear 99.9 2E-21 4.4E-26 178.0 31.0 343 68-467 263-611 (1018)
20 KOG2002 TPR-containing nuclear 99.9 1.1E-21 2.4E-26 179.8 28.8 349 67-473 156-513 (1018)
21 KOG1126 DNA-binding cell divis 99.9 2.9E-23 6.4E-28 182.9 16.8 280 67-406 345-624 (638)
22 PRK10049 pgaA outer membrane p 99.9 5.6E-21 1.2E-25 186.3 34.5 347 70-473 44-444 (765)
23 KOG1155 Anaphase-promoting com 99.9 1.9E-20 4E-25 158.1 30.9 345 74-475 163-526 (559)
24 KOG1155 Anaphase-promoting com 99.9 1.7E-20 3.7E-25 158.3 28.4 277 119-443 260-536 (559)
25 PRK10049 pgaA outer membrane p 99.9 3.9E-20 8.5E-25 180.5 34.4 334 65-446 73-459 (765)
26 PRK09782 bacteriophage N4 rece 99.9 1E-20 2.3E-25 184.6 30.1 265 120-443 476-740 (987)
27 KOG1129 TPR repeat-containing 99.9 9.8E-21 2.1E-25 152.7 23.8 286 117-448 177-463 (478)
28 KOG0547 Translocase of outer m 99.9 1.3E-20 2.8E-25 160.0 25.2 279 121-446 115-494 (606)
29 PRK09782 bacteriophage N4 rece 99.9 1E-20 2.3E-25 184.6 28.4 292 67-430 467-760 (987)
30 KOG1173 Anaphase-promoting com 99.9 1.2E-19 2.5E-24 157.2 25.8 280 73-406 242-522 (611)
31 KOG2003 TPR repeat-containing 99.9 7.7E-21 1.7E-25 160.2 15.4 211 214-470 498-708 (840)
32 KOG1941 Acetylcholine receptor 99.9 4E-18 8.7E-23 139.7 30.6 348 76-447 7-364 (518)
33 KOG1173 Anaphase-promoting com 99.9 1E-19 2.2E-24 157.5 22.4 279 119-445 242-520 (611)
34 KOG2076 RNA polymerase III tra 99.9 1.3E-18 2.9E-23 158.7 30.5 341 75-474 139-501 (895)
35 KOG1941 Acetylcholine receptor 99.9 1.1E-18 2.3E-23 143.0 25.9 333 123-472 8-347 (518)
36 PRK04841 transcriptional regul 99.9 3E-17 6.6E-22 166.1 41.2 354 78-449 412-766 (903)
37 PF13429 TPR_15: Tetratricopep 99.8 1.1E-20 2.3E-25 163.1 13.3 268 125-445 12-279 (280)
38 KOG0624 dsRNA-activated protei 99.8 6.5E-18 1.4E-22 137.5 24.0 323 69-444 32-371 (504)
39 KOG2003 TPR repeat-containing 99.8 1.1E-17 2.4E-22 141.4 25.9 285 78-428 422-708 (840)
40 TIGR00540 hemY_coli hemY prote 99.8 6.9E-17 1.5E-21 146.6 32.6 319 74-450 83-406 (409)
41 KOG1129 TPR repeat-containing 99.8 2.6E-18 5.5E-23 138.9 20.3 286 70-407 176-463 (478)
42 COG2956 Predicted N-acetylgluc 99.8 2.5E-16 5.5E-21 127.4 31.4 276 80-406 40-315 (389)
43 COG3063 PilF Tfp pilus assembl 99.8 6.3E-18 1.4E-22 130.3 21.2 208 162-406 33-240 (250)
44 PLN03081 pentatricopeptide (PP 99.8 2.4E-17 5.3E-22 160.6 30.7 302 77-441 89-418 (697)
45 PRK04841 transcriptional regul 99.8 4.4E-16 9.4E-21 157.7 39.9 340 117-474 370-749 (903)
46 KOG0548 Molecular co-chaperone 99.8 3.6E-17 7.7E-22 141.4 26.4 228 166-427 226-473 (539)
47 PLN03218 maturation of RBCL 1; 99.8 2E-16 4.2E-21 156.1 34.9 308 77-441 439-746 (1060)
48 cd05804 StaR_like StaR_like; a 99.8 2.8E-16 6.2E-21 141.4 33.4 339 71-452 2-345 (355)
49 PRK12370 invasion protein regu 99.8 1.2E-17 2.7E-22 157.1 24.5 249 92-401 277-534 (553)
50 PRK12370 invasion protein regu 99.8 3.5E-17 7.5E-22 154.1 26.8 261 124-441 261-533 (553)
51 KOG2076 RNA polymerase III tra 99.8 5.3E-17 1.1E-21 148.5 26.2 326 64-441 162-510 (895)
52 COG2956 Predicted N-acetylgluc 99.8 1.9E-16 4.1E-21 128.1 25.8 272 125-442 39-310 (389)
53 PLN03218 maturation of RBCL 1; 99.8 1.2E-15 2.7E-20 150.6 36.9 312 74-442 471-782 (1060)
54 TIGR02521 type_IV_pilW type IV 99.8 3.5E-17 7.7E-22 138.5 22.8 206 202-443 27-232 (234)
55 PF13429 TPR_15: Tetratricopep 99.8 6.6E-19 1.4E-23 152.0 12.3 267 79-403 12-278 (280)
56 TIGR02521 type_IV_pilW type IV 99.8 3.8E-17 8.2E-22 138.3 23.0 202 164-402 31-232 (234)
57 PRK10747 putative protoheme IX 99.8 3.3E-16 7.1E-21 141.3 29.9 309 74-444 83-391 (398)
58 PLN03081 pentatricopeptide (PP 99.8 3.1E-16 6.6E-21 153.0 30.5 267 76-400 124-418 (697)
59 COG3063 PilF Tfp pilus assembl 99.8 6.1E-17 1.3E-21 124.9 19.1 208 202-445 31-238 (250)
60 PRK11189 lipoprotein NlpI; Pro 99.8 1E-16 2.2E-21 138.4 22.9 225 92-360 42-266 (296)
61 PRK14574 hmsH outer membrane p 99.8 9.2E-16 2E-20 147.3 30.8 348 71-473 30-501 (822)
62 KOG4162 Predicted calmodulin-b 99.8 1.6E-15 3.5E-20 136.6 30.1 332 72-449 390-789 (799)
63 KOG0548 Molecular co-chaperone 99.8 4.5E-16 9.7E-21 134.7 25.5 323 77-443 4-421 (539)
64 PRK11189 lipoprotein NlpI; Pro 99.8 9.2E-17 2E-21 138.6 19.3 228 177-444 39-266 (296)
65 KOG1174 Anaphase-promoting com 99.8 3.8E-15 8.2E-20 124.6 27.0 272 117-444 228-501 (564)
66 KOG1125 TPR repeat-containing 99.8 1.6E-16 3.4E-21 138.7 19.4 269 79-392 289-561 (579)
67 KOG1174 Anaphase-promoting com 99.7 8E-16 1.7E-20 128.6 22.5 278 69-407 226-505 (564)
68 KOG1125 TPR repeat-containing 99.7 1.9E-16 4E-21 138.2 18.1 270 125-433 289-561 (579)
69 KOG0495 HAT repeat protein [RN 99.7 1.1E-14 2.3E-19 129.0 29.1 323 66-450 507-853 (913)
70 PRK14574 hmsH outer membrane p 99.7 2.4E-14 5.1E-19 137.8 33.8 332 71-448 98-518 (822)
71 KOG0624 dsRNA-activated protei 99.7 5.3E-15 1.2E-19 120.8 23.4 290 116-445 33-338 (504)
72 KOG0550 Molecular chaperone (D 99.7 1.9E-15 4.2E-20 126.4 18.3 291 121-446 49-353 (486)
73 TIGR00540 hemY_coli hemY prote 99.7 3.9E-14 8.4E-19 128.7 28.4 288 70-406 113-403 (409)
74 cd05804 StaR_like StaR_like; a 99.7 2E-14 4.3E-19 129.5 26.2 320 117-474 2-325 (355)
75 PF14938 SNAP: Soluble NSF att 99.7 3.6E-14 7.7E-19 121.7 23.5 227 204-439 33-262 (282)
76 PRK10747 putative protoheme IX 99.7 2.4E-13 5.2E-18 122.8 29.9 269 77-405 120-393 (398)
77 PLN03077 Protein ECB2; Provisi 99.7 3E-14 6.6E-19 142.5 26.1 261 123-441 325-616 (857)
78 KOG1156 N-terminal acetyltrans 99.7 4.7E-13 1E-17 118.7 29.9 328 66-443 32-434 (700)
79 KOG0550 Molecular chaperone (D 99.7 4.7E-15 1E-19 124.1 16.5 291 73-405 47-353 (486)
80 PF12569 NARP1: NMDA receptor- 99.6 9.2E-13 2E-17 120.0 30.4 305 121-459 4-350 (517)
81 PLN03077 Protein ECB2; Provisi 99.6 9.8E-14 2.1E-18 138.9 26.6 297 77-440 53-380 (857)
82 PF14938 SNAP: Soluble NSF att 99.6 2.7E-14 5.8E-19 122.5 18.3 191 251-447 38-229 (282)
83 KOG0495 HAT repeat protein [RN 99.6 1.1E-12 2.3E-17 116.6 26.7 315 69-442 544-879 (913)
84 PF12569 NARP1: NMDA receptor- 99.6 9.7E-12 2.1E-16 113.4 32.7 301 74-411 3-343 (517)
85 KOG4162 Predicted calmodulin-b 99.6 3.6E-12 7.7E-17 115.5 28.6 290 75-407 433-788 (799)
86 TIGR03302 OM_YfiO outer membra 99.6 6.4E-13 1.4E-17 111.9 20.6 182 202-402 29-232 (235)
87 TIGR03302 OM_YfiO outer membra 99.6 4.3E-13 9.4E-18 112.9 19.4 178 164-359 33-232 (235)
88 KOG1156 N-terminal acetyltrans 99.6 3.8E-11 8.2E-16 106.9 31.0 345 68-451 68-519 (700)
89 KOG2300 Uncharacterized conser 99.6 1.2E-10 2.5E-15 100.2 32.1 362 74-454 45-525 (629)
90 PLN02789 farnesyltranstransfer 99.5 5.4E-12 1.2E-16 108.6 24.1 213 169-427 42-268 (320)
91 PLN02789 farnesyltranstransfer 99.5 5.2E-12 1.1E-16 108.7 22.6 205 133-385 49-267 (320)
92 COG3071 HemY Uncharacterized e 99.5 1.4E-10 3.1E-15 97.5 29.5 306 75-447 84-394 (400)
93 KOG2376 Signal recognition par 99.5 4.2E-10 9E-15 99.4 33.0 346 69-443 40-487 (652)
94 KOG1127 TPR repeat-containing 99.5 7.2E-12 1.6E-16 116.5 22.7 329 91-472 473-866 (1238)
95 KOG3785 Uncharacterized conser 99.5 3.4E-11 7.3E-16 99.4 22.2 304 91-440 37-419 (557)
96 KOG1127 TPR repeat-containing 99.5 9.7E-11 2.1E-15 109.3 27.6 234 177-447 471-704 (1238)
97 KOG2300 Uncharacterized conser 99.5 7.9E-10 1.7E-14 95.3 30.9 375 74-474 6-503 (629)
98 PRK15359 type III secretion sy 99.4 1.4E-11 2.9E-16 93.8 15.2 112 291-426 27-138 (144)
99 KOG2376 Signal recognition par 99.4 8.5E-09 1.8E-13 91.4 34.0 332 79-436 83-513 (652)
100 KOG3785 Uncharacterized conser 99.4 9.7E-11 2.1E-15 96.8 20.6 285 75-398 57-418 (557)
101 PRK15179 Vi polysaccharide bio 99.4 2.5E-11 5.4E-16 115.0 19.7 164 172-362 57-220 (694)
102 PRK15359 type III secretion sy 99.4 1.9E-11 4.1E-16 93.0 14.3 112 226-362 13-124 (144)
103 PRK10370 formate-dependent nit 99.4 7.7E-11 1.7E-15 94.7 18.1 153 254-447 22-177 (198)
104 PRK15179 Vi polysaccharide bio 99.4 6E-11 1.3E-15 112.5 20.0 136 285-444 83-218 (694)
105 PRK14720 transcript cleavage f 99.4 2.3E-10 5E-15 109.5 23.7 250 68-359 24-283 (906)
106 KOG1915 Cell cycle control pro 99.3 6.6E-09 1.4E-13 89.6 28.3 337 69-450 202-592 (677)
107 PRK10370 formate-dependent nit 99.3 3.6E-10 7.8E-15 90.9 19.5 154 211-406 21-177 (198)
108 KOG1128 Uncharacterized conser 99.3 1.8E-10 3.8E-15 104.3 19.0 257 88-407 357-621 (777)
109 PRK14720 transcript cleavage f 99.3 4E-10 8.7E-15 107.8 22.3 244 164-445 31-285 (906)
110 COG2909 MalT ATP-dependent tra 99.3 3.9E-08 8.4E-13 91.8 33.0 338 72-440 344-685 (894)
111 COG5010 TadD Flp pilus assembl 99.3 4.8E-10 1E-14 89.3 17.6 166 117-314 63-228 (257)
112 PF13424 TPR_12: Tetratricopep 99.3 1.6E-11 3.5E-16 82.9 8.1 77 284-361 1-77 (78)
113 PF13424 TPR_12: Tetratricopep 99.3 3.8E-11 8.2E-16 81.1 9.9 78 369-446 1-78 (78)
114 KOG1915 Cell cycle control pro 99.3 3.4E-08 7.3E-13 85.3 29.4 335 68-442 100-499 (677)
115 KOG1128 Uncharacterized conser 99.3 1.9E-10 4.1E-15 104.1 16.2 224 166-450 400-623 (777)
116 KOG2047 mRNA splicing factor [ 99.3 1.6E-08 3.5E-13 90.5 27.0 336 74-441 247-613 (835)
117 KOG3060 Uncharacterized conser 99.3 1.3E-08 2.7E-13 80.6 23.4 197 178-407 26-225 (289)
118 KOG3060 Uncharacterized conser 99.3 5.3E-09 1.1E-13 82.7 21.2 206 90-339 26-234 (289)
119 PRK15363 pathogenicity island 99.3 6E-10 1.3E-14 82.7 15.2 105 285-406 32-136 (157)
120 COG5010 TadD Flp pilus assembl 99.3 4.5E-10 9.7E-15 89.5 15.3 158 252-439 70-227 (257)
121 CHL00033 ycf3 photosystem I as 99.3 1.1E-10 2.4E-15 92.1 12.0 121 326-452 31-151 (168)
122 KOG1586 Protein required for f 99.2 3.3E-09 7.2E-14 82.6 19.3 202 218-447 26-228 (288)
123 KOG3617 WD40 and TPR repeat-co 99.2 1.8E-08 3.9E-13 92.7 26.4 251 165-445 859-1176(1416)
124 COG3071 HemY Uncharacterized e 99.2 7.3E-08 1.6E-12 81.6 27.8 278 71-405 114-393 (400)
125 KOG2047 mRNA splicing factor [ 99.2 1.5E-07 3.2E-12 84.6 31.0 327 74-447 386-723 (835)
126 PF13525 YfiO: Outer membrane 99.2 9.4E-09 2E-13 83.5 21.7 184 120-350 4-198 (203)
127 KOG1585 Protein required for f 99.2 3.9E-08 8.5E-13 77.3 23.5 220 165-397 32-251 (308)
128 PRK15363 pathogenicity island 99.2 5.7E-10 1.2E-14 82.8 12.7 103 327-445 32-134 (157)
129 KOG0553 TPR repeat-containing 99.2 3.5E-10 7.5E-15 91.9 12.4 122 286-431 79-200 (304)
130 TIGR02552 LcrH_SycD type III s 99.2 4.8E-10 1E-14 85.3 11.7 114 309-446 4-117 (135)
131 TIGR02552 LcrH_SycD type III s 99.2 9E-10 1.9E-14 83.8 13.1 107 283-406 12-118 (135)
132 KOG4340 Uncharacterized conser 99.2 5.6E-09 1.2E-13 84.6 17.6 225 132-397 21-265 (459)
133 KOG1586 Protein required for f 99.2 7.6E-08 1.6E-12 75.2 22.8 205 174-407 24-229 (288)
134 PRK10866 outer membrane biogen 99.1 2.2E-08 4.8E-13 83.3 21.0 173 165-355 33-237 (243)
135 PF10345 Cohesin_load: Cohesin 99.1 3.9E-06 8.4E-11 80.7 39.2 348 73-432 57-467 (608)
136 KOG1585 Protein required for f 99.1 1.2E-07 2.7E-12 74.6 23.1 189 247-442 30-218 (308)
137 KOG3617 WD40 and TPR repeat-co 99.1 4.5E-08 9.8E-13 90.2 23.9 251 118-399 855-1171(1416)
138 PF10345 Cohesin_load: Cohesin 99.1 8.6E-06 1.9E-10 78.3 40.9 319 116-443 54-433 (608)
139 CHL00033 ycf3 photosystem I as 99.1 4.8E-09 1E-13 82.8 15.5 123 202-329 31-154 (168)
140 PF09976 TPR_21: Tetratricopep 99.1 1.7E-08 3.7E-13 77.3 18.0 123 300-441 23-145 (145)
141 PF04733 Coatomer_E: Coatomer 99.1 4.9E-09 1.1E-13 89.3 16.2 257 83-406 9-269 (290)
142 KOG0553 TPR repeat-containing 99.1 2.2E-09 4.9E-14 87.3 12.9 122 204-347 79-200 (304)
143 KOG4340 Uncharacterized conser 99.1 7.2E-07 1.6E-11 72.7 26.7 181 68-272 37-265 (459)
144 PRK10866 outer membrane biogen 99.1 8.8E-08 1.9E-12 79.7 22.0 180 248-439 32-237 (243)
145 PF13525 YfiO: Outer membrane 99.1 1.4E-07 2.9E-12 76.8 22.6 182 165-393 6-198 (203)
146 PRK02603 photosystem I assembl 99.1 2.3E-09 5.1E-14 84.9 11.3 113 325-450 30-149 (172)
147 PF09976 TPR_21: Tetratricopep 99.0 3.3E-08 7.1E-13 75.7 16.6 123 218-357 23-145 (145)
148 PLN03088 SGT1, suppressor of 99.0 7.6E-09 1.7E-13 91.7 14.5 113 291-427 5-117 (356)
149 PRK02603 photosystem I assembl 99.0 3.6E-08 7.9E-13 78.1 16.0 102 281-396 28-129 (172)
150 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.5E-08 3.4E-13 75.1 12.2 107 289-406 3-109 (119)
151 PF04733 Coatomer_E: Coatomer 99.0 9E-09 1.9E-13 87.8 11.7 252 129-441 9-263 (290)
152 PF12895 Apc3: Anaphase-promot 98.9 8.4E-09 1.8E-13 70.5 8.7 84 342-440 1-84 (84)
153 COG4783 Putative Zn-dependent 98.9 8.8E-08 1.9E-12 83.5 16.6 148 249-443 307-454 (484)
154 PF13414 TPR_11: TPR repeat; P 98.9 9.8E-09 2.1E-13 67.3 8.3 65 288-360 3-68 (69)
155 COG4783 Putative Zn-dependent 98.9 1.3E-07 2.8E-12 82.5 17.0 152 119-318 304-455 (484)
156 PLN03088 SGT1, suppressor of 98.9 4.3E-08 9.4E-13 87.0 14.7 98 251-362 5-102 (356)
157 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.1E-08 6.7E-13 73.5 11.8 105 331-445 3-107 (119)
158 COG2909 MalT ATP-dependent tra 98.9 1.6E-05 3.5E-10 75.0 31.1 266 78-357 418-686 (894)
159 KOG1070 rRNA processing protei 98.9 3E-06 6.4E-11 83.1 26.8 211 117-360 1454-1664(1710)
160 KOG1070 rRNA processing protei 98.9 5.7E-07 1.2E-11 87.9 21.6 210 202-443 1454-1663(1710)
161 PF12688 TPR_5: Tetratrico pep 98.9 6.7E-08 1.4E-12 69.7 11.7 102 331-442 2-103 (120)
162 PF13414 TPR_11: TPR repeat; P 98.9 1.5E-08 3.2E-13 66.5 7.6 64 165-236 4-68 (69)
163 PF12895 Apc3: Anaphase-promot 98.9 2.5E-08 5.3E-13 68.2 9.0 84 260-356 1-84 (84)
164 cd00189 TPR Tetratricopeptide 98.8 3.1E-08 6.6E-13 70.4 9.6 97 290-403 2-98 (100)
165 PF12688 TPR_5: Tetratrico pep 98.8 3.4E-07 7.5E-12 66.0 14.6 102 289-401 2-103 (120)
166 KOG0543 FKBP-type peptidyl-pro 98.8 2.2E-07 4.8E-12 79.4 15.4 101 330-446 257-358 (397)
167 cd00189 TPR Tetratricopeptide 98.8 6.2E-08 1.4E-12 68.8 10.0 96 332-443 2-97 (100)
168 KOG0543 FKBP-type peptidyl-pro 98.8 2.3E-07 5E-12 79.3 14.3 137 251-404 211-357 (397)
169 KOG3616 Selective LIM binding 98.8 2.5E-05 5.4E-10 72.0 27.7 272 120-443 705-1024(1636)
170 KOG4555 TPR repeat-containing 98.8 8.7E-07 1.9E-11 62.5 14.1 103 289-404 44-146 (175)
171 PRK10803 tol-pal system protei 98.7 3E-07 6.6E-12 77.0 13.6 107 289-406 143-250 (263)
172 KOG2471 TPR repeat-containing 98.7 8.9E-06 1.9E-10 71.1 22.2 299 119-440 238-681 (696)
173 KOG1464 COP9 signalosome, subu 98.7 6E-06 1.3E-10 66.5 19.5 241 178-428 41-286 (440)
174 COG4785 NlpI Lipoprotein NlpI, 98.7 1.3E-06 2.8E-11 67.8 15.0 206 116-359 60-266 (297)
175 KOG1839 Uncharacterized protei 98.7 5.4E-07 1.2E-11 88.1 15.8 202 167-370 935-1138(1236)
176 COG3898 Uncharacterized membra 98.7 0.00013 2.8E-09 62.4 30.4 302 80-442 89-391 (531)
177 COG4700 Uncharacterized protei 98.7 1E-05 2.3E-10 61.3 18.5 159 218-406 68-226 (251)
178 COG4785 NlpI Lipoprotein NlpI, 98.7 7.5E-07 1.6E-11 69.0 12.6 204 202-442 61-265 (297)
179 PRK10803 tol-pal system protei 98.7 8.5E-07 1.9E-11 74.3 14.0 106 249-362 143-249 (263)
180 PF08631 SPO22: Meiosis protei 98.7 0.00015 3.3E-09 62.3 28.1 256 174-442 3-274 (278)
181 PF13432 TPR_16: Tetratricopep 98.7 1.1E-07 2.4E-12 61.4 6.7 61 293-361 2-62 (65)
182 KOG3616 Selective LIM binding 98.7 0.00012 2.6E-09 67.7 27.9 205 207-440 662-908 (1636)
183 PF10300 DUF3808: Protein of u 98.6 0.00016 3.5E-09 66.8 28.8 170 260-451 200-384 (468)
184 KOG1839 Uncharacterized protei 98.6 2.5E-06 5.3E-11 83.7 17.5 201 73-279 930-1130(1236)
185 COG4105 ComL DNA uptake lipopr 98.6 3E-05 6.4E-10 62.8 20.4 177 248-436 34-226 (254)
186 PF13432 TPR_16: Tetratricopep 98.6 1.1E-07 2.4E-12 61.3 5.6 63 168-238 1-63 (65)
187 COG4105 ComL DNA uptake lipopr 98.6 8.2E-06 1.8E-10 65.9 17.0 173 165-352 35-226 (254)
188 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00022 4.9E-09 60.6 27.7 231 134-405 36-268 (291)
189 PRK15331 chaperone protein Sic 98.6 1.5E-06 3.3E-11 65.2 11.5 104 281-401 30-133 (165)
190 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.2E-06 6.8E-11 74.8 15.4 119 294-439 175-293 (395)
191 KOG4555 TPR repeat-containing 98.6 1.1E-05 2.4E-10 57.1 14.6 100 208-317 45-144 (175)
192 PF08631 SPO22: Meiosis protei 98.6 0.00019 4E-09 61.7 25.7 258 86-358 4-274 (278)
193 PRK10153 DNA-binding transcrip 98.6 4E-06 8.7E-11 77.8 16.4 136 287-445 338-484 (517)
194 PRK10153 DNA-binding transcrip 98.5 3.4E-06 7.3E-11 78.3 15.1 139 247-407 338-487 (517)
195 PRK15331 chaperone protein Sic 98.5 2.1E-06 4.5E-11 64.5 11.0 97 164-276 37-133 (165)
196 KOG2796 Uncharacterized conser 98.5 0.00014 3.1E-09 58.6 21.6 229 119-362 67-318 (366)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.2E-06 7E-11 74.8 14.0 120 212-356 175-294 (395)
198 COG4235 Cytochrome c biogenesi 98.5 3.5E-06 7.6E-11 69.6 13.0 109 116-241 151-262 (287)
199 KOG2471 TPR repeat-containing 98.5 2.8E-05 6.1E-10 68.1 18.8 303 123-448 19-369 (696)
200 PF10300 DUF3808: Protein of u 98.5 0.00033 7.1E-09 64.8 27.1 168 219-408 201-382 (468)
201 COG3898 Uncharacterized membra 98.5 0.00047 1E-08 59.1 25.3 267 77-402 122-392 (531)
202 COG4700 Uncharacterized protei 98.5 4.2E-05 9.1E-10 58.1 17.2 136 289-446 90-225 (251)
203 COG1729 Uncharacterized protei 98.5 1.7E-06 3.6E-11 70.6 10.6 106 291-407 144-249 (262)
204 KOG1464 COP9 signalosome, subu 98.5 2.8E-05 6.2E-10 62.8 17.2 241 91-344 42-286 (440)
205 KOG1463 26S proteasome regulat 98.5 0.00057 1.2E-08 57.3 24.5 300 125-441 8-314 (411)
206 KOG4234 TPR repeat-containing 98.5 6.3E-06 1.4E-10 63.2 12.3 139 290-449 97-235 (271)
207 COG1729 Uncharacterized protei 98.5 1.6E-06 3.4E-11 70.7 9.7 105 124-239 144-248 (262)
208 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00046 1E-08 58.6 26.3 232 177-446 36-268 (291)
209 KOG3081 Vesicle coat complex C 98.4 0.00025 5.4E-09 57.5 20.9 145 254-435 114-262 (299)
210 PRK11906 transcriptional regul 98.4 9.4E-06 2E-10 71.6 13.9 164 78-273 258-432 (458)
211 COG4235 Cytochrome c biogenesi 98.4 1E-05 2.2E-10 67.0 13.3 106 326-447 152-260 (287)
212 KOG4234 TPR repeat-containing 98.4 4.3E-06 9.3E-11 64.0 10.0 106 121-238 95-200 (271)
213 PF13512 TPR_18: Tetratricopep 98.4 1.1E-05 2.3E-10 59.3 11.7 108 288-406 10-132 (142)
214 KOG3081 Vesicle coat complex C 98.4 0.00071 1.5E-08 54.9 25.2 250 77-396 11-264 (299)
215 COG5159 RPN6 26S proteasome re 98.4 0.00046 1E-08 56.4 21.3 231 168-406 7-239 (421)
216 COG5159 RPN6 26S proteasome re 98.4 0.00086 1.9E-08 54.9 23.9 230 125-362 7-238 (421)
217 PRK11906 transcriptional regul 98.4 1.4E-05 3.1E-10 70.5 13.8 162 167-355 258-432 (458)
218 PF13512 TPR_18: Tetratricopep 98.3 9.3E-06 2E-10 59.6 10.2 108 121-239 10-132 (142)
219 KOG2053 Mitochondrial inherita 98.3 0.0035 7.6E-08 59.8 28.5 229 87-359 21-255 (932)
220 KOG2796 Uncharacterized conser 98.3 0.00026 5.6E-09 57.2 17.9 179 212-406 128-319 (366)
221 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.3E-06 9.4E-11 73.5 8.5 68 244-317 71-141 (453)
222 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 8.3E-06 1.8E-10 71.8 9.6 71 326-402 71-141 (453)
223 PF13371 TPR_9: Tetratricopept 98.2 1.1E-05 2.4E-10 53.3 8.3 61 294-362 1-61 (73)
224 KOG4648 Uncharacterized conser 98.2 7.6E-06 1.7E-10 68.2 8.2 98 292-406 101-198 (536)
225 PF14559 TPR_19: Tetratricopep 98.2 5.9E-06 1.3E-10 53.8 6.3 56 298-361 1-56 (68)
226 KOG1463 26S proteasome regulat 98.2 0.0018 3.8E-08 54.6 21.6 233 168-410 8-245 (411)
227 PF02259 FAT: FAT domain; Int 98.2 0.0049 1.1E-07 55.6 30.6 271 127-427 4-305 (352)
228 PF12968 DUF3856: Domain of Un 98.2 0.00082 1.8E-08 46.9 15.8 120 205-324 6-136 (144)
229 KOG2610 Uncharacterized conser 98.1 0.00072 1.6E-08 56.8 18.1 166 212-400 109-274 (491)
230 PF13371 TPR_9: Tetratricopept 98.1 1.1E-05 2.4E-10 53.4 6.6 60 379-445 1-60 (73)
231 PF14559 TPR_19: Tetratricopep 98.1 1.1E-05 2.4E-10 52.5 5.6 66 259-338 2-67 (68)
232 COG2976 Uncharacterized protei 98.1 0.0029 6.3E-08 49.0 18.8 100 331-444 90-189 (207)
233 KOG2610 Uncharacterized conser 98.0 0.0055 1.2E-07 51.7 21.9 168 168-357 107-274 (491)
234 PF10602 RPN7: 26S proteasome 98.0 0.00082 1.8E-08 53.0 15.9 128 268-403 16-143 (177)
235 KOG4648 Uncharacterized conser 98.0 7.4E-05 1.6E-09 62.6 10.3 98 124-238 100-197 (536)
236 PF10602 RPN7: 26S proteasome 98.0 0.00058 1.3E-08 53.8 14.9 128 308-444 16-143 (177)
237 PF13374 TPR_10: Tetratricopep 97.9 2.5E-05 5.5E-10 44.9 5.0 41 288-328 2-42 (42)
238 PF12968 DUF3856: Domain of Un 97.9 0.0028 6E-08 44.4 15.6 122 288-409 7-136 (144)
239 PF13281 DUF4071: Domain of un 97.9 0.004 8.7E-08 54.6 20.0 207 179-404 114-336 (374)
240 PF04184 ST7: ST7 protein; In 97.9 0.0016 3.4E-08 58.1 17.3 227 174-449 178-420 (539)
241 PF09986 DUF2225: Uncharacteri 97.9 0.00028 6.1E-09 57.3 12.0 102 260-361 89-196 (214)
242 PF04184 ST7: ST7 protein; In 97.9 0.0096 2.1E-07 53.3 21.2 138 91-273 183-320 (539)
243 KOG4642 Chaperone-dependent E3 97.9 0.00026 5.5E-09 56.3 10.4 105 121-242 10-114 (284)
244 KOG4642 Chaperone-dependent E3 97.8 0.00014 3.1E-09 57.7 8.7 99 292-407 14-112 (284)
245 COG2976 Uncharacterized protei 97.8 0.0084 1.8E-07 46.6 18.4 138 168-317 35-188 (207)
246 PF13281 DUF4071: Domain of un 97.8 0.0074 1.6E-07 53.0 19.7 203 222-443 115-334 (374)
247 PF12862 Apc5: Anaphase-promot 97.8 0.0009 1.9E-08 46.5 11.5 83 216-298 8-91 (94)
248 PF09986 DUF2225: Uncharacteri 97.8 0.00048 1E-08 55.9 11.4 99 343-443 90-194 (214)
249 PF13374 TPR_10: Tetratricopep 97.8 5.7E-05 1.2E-09 43.4 4.4 40 165-204 3-42 (42)
250 PF12862 Apc5: Anaphase-promot 97.8 0.00072 1.6E-08 47.0 10.6 80 258-339 8-90 (94)
251 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00034 7.4E-09 58.5 10.2 106 246-361 79-184 (390)
252 KOG3783 Uncharacterized conser 97.7 0.034 7.5E-07 50.4 26.4 239 167-444 270-521 (546)
253 PF03704 BTAD: Bacterial trans 97.7 0.0021 4.6E-08 49.3 13.7 115 333-454 9-137 (146)
254 KOG1550 Extracellular protein 97.7 0.03 6.5E-07 53.5 23.7 267 119-442 242-537 (552)
255 PF05843 Suf: Suppressor of fo 97.7 0.0015 3.2E-08 56.2 13.6 136 250-405 3-139 (280)
256 PF13176 TPR_7: Tetratricopept 97.7 0.00014 3E-09 39.9 4.7 34 416-449 1-34 (36)
257 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00055 1.2E-08 57.3 10.1 110 116-238 76-185 (390)
258 KOG0985 Vesicle coat protein c 97.7 0.016 3.5E-07 56.4 20.5 216 166-439 1106-1337(1666)
259 PF03704 BTAD: Bacterial trans 97.6 0.0079 1.7E-07 46.1 15.9 109 123-239 8-129 (146)
260 PF13428 TPR_14: Tetratricopep 97.6 0.00024 5.2E-09 41.1 5.2 42 289-338 2-43 (44)
261 PF05843 Suf: Suppressor of fo 97.6 0.0011 2.4E-08 57.0 11.6 136 290-446 3-139 (280)
262 PF02259 FAT: FAT domain; Int 97.6 0.053 1.1E-06 48.9 26.2 240 76-343 30-305 (352)
263 PF06552 TOM20_plant: Plant sp 97.6 0.0023 5E-08 49.0 11.4 86 304-406 7-113 (186)
264 PF13176 TPR_7: Tetratricopept 97.6 0.00029 6.3E-09 38.6 5.0 33 208-240 1-33 (36)
265 PF00515 TPR_1: Tetratricopept 97.6 0.00015 3.3E-09 39.2 3.8 33 373-405 1-33 (34)
266 KOG2041 WD40 repeat protein [G 97.5 0.029 6.2E-07 52.4 19.9 104 165-273 693-821 (1189)
267 KOG1538 Uncharacterized conser 97.5 0.025 5.5E-07 52.3 19.3 189 129-356 564-773 (1081)
268 PF13431 TPR_17: Tetratricopep 97.5 0.0001 2.2E-09 39.7 2.7 34 310-351 1-34 (34)
269 KOG4507 Uncharacterized conser 97.5 0.0048 1E-07 56.1 14.5 95 297-407 616-710 (886)
270 PF00515 TPR_1: Tetratricopept 97.5 0.00023 4.9E-09 38.5 4.2 32 121-152 1-32 (34)
271 KOG0545 Aryl-hydrocarbon recep 97.5 0.0011 2.3E-08 53.1 9.3 111 120-238 177-296 (329)
272 KOG0985 Vesicle coat protein c 97.5 0.12 2.5E-06 50.9 24.9 218 119-397 1102-1336(1666)
273 KOG1550 Extracellular protein 97.5 0.057 1.2E-06 51.6 22.6 266 76-402 245-538 (552)
274 KOG2041 WD40 repeat protein [G 97.5 0.088 1.9E-06 49.4 27.2 112 121-233 692-823 (1189)
275 PF13428 TPR_14: Tetratricopep 97.5 0.00027 5.9E-09 40.9 4.4 42 374-422 2-43 (44)
276 PF07719 TPR_2: Tetratricopept 97.5 0.00029 6.2E-09 38.1 4.2 32 374-405 2-33 (34)
277 KOG2053 Mitochondrial inherita 97.5 0.039 8.3E-07 53.1 20.1 187 175-398 20-215 (932)
278 PF07719 TPR_2: Tetratricopept 97.4 0.00034 7.3E-09 37.8 4.3 32 121-152 1-32 (34)
279 KOG4322 Anaphase-promoting com 97.4 0.023 5E-07 49.8 17.0 189 248-442 273-470 (482)
280 KOG0545 Aryl-hydrocarbon recep 97.4 0.0037 7.9E-08 50.2 11.1 105 249-361 179-295 (329)
281 KOG3783 Uncharacterized conser 97.4 0.11 2.4E-06 47.3 26.6 247 118-405 264-523 (546)
282 PF13431 TPR_17: Tetratricopep 97.3 0.00025 5.4E-09 38.1 2.5 34 186-227 1-34 (34)
283 PF13181 TPR_8: Tetratricopept 97.3 0.00097 2.1E-08 36.0 4.7 31 374-404 2-32 (34)
284 KOG4322 Anaphase-promoting com 97.2 0.12 2.7E-06 45.5 24.4 199 199-403 266-472 (482)
285 KOG1924 RhoA GTPase effector D 97.2 0.0011 2.3E-08 61.9 7.3 6 143-148 734-739 (1102)
286 PF13181 TPR_8: Tetratricopept 97.2 0.0011 2.3E-08 35.8 4.4 31 415-445 2-32 (34)
287 KOG1538 Uncharacterized conser 97.1 0.18 3.8E-06 47.1 19.9 182 168-398 636-829 (1081)
288 PF06552 TOM20_plant: Plant sp 97.1 0.0085 1.8E-07 46.0 9.7 69 284-360 21-103 (186)
289 COG0790 FOG: TPR repeat, SEL1 97.0 0.22 4.7E-06 43.6 19.2 182 215-442 50-265 (292)
290 KOG4814 Uncharacterized conser 97.0 0.32 7E-06 45.4 22.7 107 330-446 354-460 (872)
291 KOG0890 Protein kinase of the 97.0 0.8 1.7E-05 49.8 25.3 91 346-447 1645-1735(2382)
292 KOG2581 26S proteasome regulat 96.9 0.24 5.3E-06 43.4 21.3 143 216-362 136-279 (493)
293 COG3118 Thioredoxin domain-con 96.9 0.17 3.8E-06 42.5 16.1 129 167-317 137-265 (304)
294 PF04910 Tcf25: Transcriptiona 96.8 0.31 6.8E-06 43.6 19.0 156 283-447 35-226 (360)
295 PF11817 Foie-gras_1: Foie gra 96.8 0.24 5.1E-06 41.9 22.5 188 167-356 13-244 (247)
296 COG0790 FOG: TPR repeat, SEL1 96.7 0.32 6.9E-06 42.5 18.5 170 128-344 48-236 (292)
297 KOG1924 RhoA GTPase effector D 96.7 0.61 1.3E-05 44.6 27.2 14 75-88 656-669 (1102)
298 PF12739 TRAPPC-Trs85: ER-Golg 96.6 0.43 9.3E-06 43.9 19.0 177 250-447 210-403 (414)
299 COG5187 RPN7 26S proteasome re 96.6 0.33 7.1E-06 40.5 18.8 139 218-363 87-225 (412)
300 COG5187 RPN7 26S proteasome re 96.6 0.34 7.3E-06 40.5 15.8 138 261-406 88-225 (412)
301 PF13174 TPR_6: Tetratricopept 96.6 0.0035 7.6E-08 33.4 3.3 32 374-405 1-32 (33)
302 KOG0687 26S proteasome regulat 96.5 0.26 5.7E-06 41.8 15.1 133 223-362 81-213 (393)
303 PF13174 TPR_6: Tetratricopept 96.5 0.0046 1E-07 32.9 3.6 32 207-238 1-32 (33)
304 KOG1914 mRNA cleavage and poly 96.5 0.62 1.4E-05 42.7 23.4 213 167-405 289-504 (656)
305 PF11817 Foie-gras_1: Foie gra 96.5 0.4 8.7E-06 40.5 22.8 92 303-399 153-244 (247)
306 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.034 7.3E-07 36.0 7.7 71 167-242 9-79 (80)
307 KOG0890 Protein kinase of the 96.4 2 4.3E-05 47.1 30.5 141 264-414 1645-1796(2382)
308 KOG0376 Serine-threonine phosp 96.4 0.0055 1.2E-07 54.5 5.1 99 292-407 8-106 (476)
309 PF12739 TRAPPC-Trs85: ER-Golg 96.4 0.77 1.7E-05 42.3 19.9 178 207-406 209-403 (414)
310 KOG1308 Hsp70-interacting prot 96.4 0.0011 2.5E-08 55.8 0.9 92 295-403 121-212 (377)
311 KOG1308 Hsp70-interacting prot 96.3 0.0035 7.6E-08 53.0 3.2 99 74-193 113-211 (377)
312 PF11207 DUF2989: Protein of u 96.3 0.39 8.5E-06 38.1 13.8 85 256-350 114-198 (203)
313 PF00244 14-3-3: 14-3-3 protei 96.2 0.3 6.6E-06 40.7 13.8 184 209-406 4-202 (236)
314 PF10579 Rapsyn_N: Rapsyn N-te 96.2 0.16 3.4E-06 33.0 9.2 69 378-450 11-79 (80)
315 KOG1914 mRNA cleavage and poly 96.2 1.1 2.3E-05 41.3 29.9 110 65-196 10-119 (656)
316 PF10516 SHNi-TPR: SHNi-TPR; 95.9 0.029 6.3E-07 30.8 4.6 35 415-449 2-36 (38)
317 PF00244 14-3-3: 14-3-3 protei 95.9 0.86 1.9E-05 38.1 19.5 178 167-360 4-199 (236)
318 PF04910 Tcf25: Transcriptiona 95.9 1.2 2.6E-05 40.0 17.1 188 245-442 37-291 (360)
319 PF04781 DUF627: Protein of un 95.9 0.14 3E-06 36.1 8.7 102 254-359 2-107 (111)
320 COG3118 Thioredoxin domain-con 95.8 0.97 2.1E-05 38.2 17.2 135 77-240 136-270 (304)
321 COG4649 Uncharacterized protei 95.8 0.61 1.3E-05 35.8 15.2 148 213-401 46-195 (221)
322 PF08424 NRDE-2: NRDE-2, neces 95.6 1.5 3.3E-05 38.8 19.5 150 281-444 12-184 (321)
323 PF10516 SHNi-TPR: SHNi-TPR; 95.6 0.049 1.1E-06 29.9 4.6 34 289-322 2-35 (38)
324 KOG0376 Serine-threonine phosp 95.6 0.015 3.2E-07 51.9 4.0 99 124-239 7-105 (476)
325 KOG2114 Vacuolar assembly/sort 95.6 1.1 2.3E-05 43.6 15.9 51 98-152 349-399 (933)
326 KOG0687 26S proteasome regulat 95.4 1.5 3.2E-05 37.6 18.8 134 181-321 81-214 (393)
327 COG4649 Uncharacterized protei 95.4 0.91 2E-05 34.9 14.3 134 79-234 62-195 (221)
328 PRK14707 hypothetical protein; 95.4 5.2 0.00011 43.7 21.0 365 80-454 836-1207(2710)
329 KOG0686 COP9 signalosome, subu 95.3 0.43 9.3E-06 42.0 11.5 117 278-400 140-256 (466)
330 PF09613 HrpB1_HrpK: Bacterial 95.1 0.69 1.5E-05 35.3 10.9 89 285-390 7-95 (160)
331 KOG4507 Uncharacterized conser 95.1 0.068 1.5E-06 49.0 6.5 102 217-339 618-719 (886)
332 PF07079 DUF1347: Protein of u 95.0 2.6 5.5E-05 38.1 33.4 139 283-439 374-520 (549)
333 smart00028 TPR Tetratricopepti 94.8 0.065 1.4E-06 27.8 3.9 29 415-443 2-30 (34)
334 PF11207 DUF2989: Protein of u 94.8 1.7 3.6E-05 34.7 13.2 82 300-394 118-199 (203)
335 smart00028 TPR Tetratricopepti 94.8 0.041 8.9E-07 28.6 3.0 31 374-404 2-32 (34)
336 PF15015 NYD-SP12_N: Spermatog 94.7 1.6 3.5E-05 38.8 13.4 109 125-241 180-297 (569)
337 KOG2581 26S proteasome regulat 94.7 3 6.5E-05 37.0 29.7 219 86-318 41-277 (493)
338 KOG2561 Adaptor protein NUB1, 94.6 1.1 2.4E-05 39.9 12.3 149 247-398 162-340 (568)
339 KOG1258 mRNA processing protei 94.6 4.1 8.9E-05 38.2 32.8 176 247-445 296-472 (577)
340 PF04781 DUF627: Protein of un 94.6 1.1 2.4E-05 31.7 11.6 101 336-442 2-106 (111)
341 COG5107 RNA14 Pre-mRNA 3'-end 94.5 3.6 7.8E-05 37.2 21.5 236 118-405 299-534 (660)
342 PF04053 Coatomer_WDAD: Coatom 94.5 3 6.5E-05 38.6 15.5 160 172-399 269-428 (443)
343 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.37 8.1E-06 28.9 6.5 37 290-334 3-39 (53)
344 KOG1497 COP9 signalosome, subu 94.3 3 6.5E-05 35.7 16.8 111 204-315 101-211 (399)
345 PRK14707 hypothetical protein; 94.3 10 0.00023 41.7 20.5 325 126-454 794-1123(2710)
346 PF08424 NRDE-2: NRDE-2, neces 94.2 3.7 8E-05 36.4 16.9 164 64-237 8-185 (321)
347 PF08626 TRAPPC9-Trs120: Trans 94.2 2.4 5.3E-05 45.0 16.3 96 346-445 361-476 (1185)
348 PF09613 HrpB1_HrpK: Bacterial 94.2 1.3 2.8E-05 33.8 10.4 87 247-347 9-95 (160)
349 KOG0686 COP9 signalosome, subu 94.0 4.2 9.1E-05 36.2 17.5 106 328-441 148-256 (466)
350 KOG4014 Uncharacterized conser 94.0 2.3 4.9E-05 33.1 12.5 156 220-406 41-237 (248)
351 KOG1497 COP9 signalosome, subu 93.9 3.6 7.9E-05 35.2 20.5 112 328-442 101-212 (399)
352 PRK13184 pknD serine/threonine 93.9 8.7 0.00019 39.3 29.2 102 83-196 483-584 (932)
353 PF07721 TPR_4: Tetratricopept 93.8 0.088 1.9E-06 26.1 2.6 24 331-354 2-25 (26)
354 PF07721 TPR_4: Tetratricopept 93.7 0.091 2E-06 26.0 2.6 25 122-146 2-26 (26)
355 KOG4814 Uncharacterized conser 93.7 6.6 0.00014 37.3 29.9 108 287-405 353-460 (872)
356 PF10952 DUF2753: Protein of u 93.7 1.9 4.1E-05 31.0 9.9 73 291-363 4-83 (140)
357 PF08311 Mad3_BUB1_I: Mad3/BUB 93.6 2.2 4.8E-05 31.5 11.2 87 344-441 40-126 (126)
358 PF08626 TRAPPC9-Trs120: Trans 93.5 13 0.00028 39.9 23.1 228 164-403 242-553 (1185)
359 PF04053 Coatomer_WDAD: Coatom 93.4 4.8 0.0001 37.4 14.7 47 131-186 271-317 (443)
360 PF04190 DUF410: Protein of un 93.1 5 0.00011 34.2 21.5 158 260-444 2-171 (260)
361 PRK10941 hypothetical protein; 92.8 2.1 4.6E-05 36.4 10.8 70 285-362 178-247 (269)
362 PF15015 NYD-SP12_N: Spermatog 92.8 2.6 5.5E-05 37.6 11.2 108 167-282 179-296 (569)
363 TIGR02561 HrpB1_HrpK type III 92.8 2.5 5.4E-05 31.8 9.7 85 288-389 10-94 (153)
364 KOG4014 Uncharacterized conser 92.7 3.9 8.5E-05 31.9 13.7 151 270-450 50-240 (248)
365 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 1.4 3E-05 26.5 7.6 32 331-362 2-33 (53)
366 PF10952 DUF2753: Protein of u 92.3 2.9 6.4E-05 30.0 9.0 68 209-276 4-78 (140)
367 PF05053 Menin: Menin; InterP 92.2 6.8 0.00015 36.6 13.6 89 273-364 262-352 (618)
368 COG3629 DnrI DNA-binding trans 92.1 6.4 0.00014 33.6 12.6 69 286-362 151-219 (280)
369 PF10255 Paf67: RNA polymerase 92.1 2.4 5.3E-05 38.3 10.7 76 165-240 123-198 (404)
370 TIGR03504 FimV_Cterm FimV C-te 91.8 0.92 2E-05 25.9 5.2 25 334-358 3-27 (44)
371 PRK10941 hypothetical protein; 91.7 0.91 2E-05 38.6 7.4 72 368-446 176-247 (269)
372 KOG2561 Adaptor protein NUB1, 91.6 1.5 3.3E-05 39.1 8.6 122 333-454 166-307 (568)
373 TIGR02561 HrpB1_HrpK type III 91.4 3.4 7.4E-05 31.1 9.0 87 119-222 8-94 (153)
374 PF10255 Paf67: RNA polymerase 91.2 5 0.00011 36.4 11.7 75 331-406 123-197 (404)
375 smart00101 14_3_3 14-3-3 homol 91.2 8.1 0.00018 32.4 21.1 181 209-404 4-202 (244)
376 TIGR03504 FimV_Cterm FimV C-te 90.9 0.77 1.7E-05 26.3 4.3 25 292-316 3-27 (44)
377 COG3629 DnrI DNA-binding trans 90.9 8 0.00017 33.1 12.0 76 118-202 150-225 (280)
378 PF09670 Cas_Cas02710: CRISPR- 90.9 12 0.00027 34.0 16.3 66 207-276 132-197 (379)
379 KOG2422 Uncharacterized conser 90.7 15 0.00032 34.6 15.8 175 134-317 251-448 (665)
380 KOG2114 Vacuolar assembly/sort 90.6 19 0.00042 35.6 16.8 30 164-193 368-397 (933)
381 PF14561 TPR_20: Tetratricopep 90.3 1.8 3.9E-05 29.6 6.5 47 308-362 8-54 (90)
382 KOG1923 Rac1 GTPase effector F 90.3 1.1 2.4E-05 42.9 7.0 15 346-360 689-703 (830)
383 KOG1258 mRNA processing protei 90.3 17 0.00036 34.5 29.3 178 205-406 296-474 (577)
384 KOG3364 Membrane protein invol 90.1 6.1 0.00013 29.2 9.6 66 248-317 32-100 (149)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 90.0 6.2 0.00013 29.2 10.0 84 262-357 40-126 (126)
386 KOG3824 Huntingtin interacting 89.7 0.96 2.1E-05 38.3 5.6 60 378-444 121-180 (472)
387 KOG2908 26S proteasome regulat 89.2 14 0.00031 32.2 17.3 99 298-400 85-184 (380)
388 KOG0128 RNA-binding protein SA 89.1 25 0.00054 34.8 20.5 229 202-442 109-340 (881)
389 PF04190 DUF410: Protein of un 89.1 13 0.00029 31.7 23.5 146 211-359 15-170 (260)
390 COG4976 Predicted methyltransf 89.0 0.88 1.9E-05 36.8 4.7 59 296-362 3-61 (287)
391 PF07163 Pex26: Pex26 protein; 88.9 13 0.00029 31.4 15.1 140 78-229 38-181 (309)
392 KOG3824 Huntingtin interacting 88.5 2.1 4.5E-05 36.4 6.7 71 254-338 122-192 (472)
393 cd02682 MIT_AAA_Arch MIT: doma 88.2 5.1 0.00011 26.2 6.9 37 74-111 5-41 (75)
394 KOG3364 Membrane protein invol 88.1 6.8 0.00015 28.9 8.2 66 373-443 32-100 (149)
395 PF12854 PPR_1: PPR repeat 88.0 1.3 2.7E-05 23.6 3.6 27 329-355 6-32 (34)
396 KOG4563 Cell cycle-regulated h 88.0 2.5 5.4E-05 36.9 7.0 65 165-229 42-106 (400)
397 PHA02537 M terminase endonucle 87.6 7.4 0.00016 32.1 9.3 110 131-242 93-214 (230)
398 KOG4563 Cell cycle-regulated h 87.5 1.7 3.6E-05 37.9 5.7 63 289-351 42-104 (400)
399 COG4976 Predicted methyltransf 87.1 0.77 1.7E-05 37.1 3.3 61 172-240 3-63 (287)
400 KOG2422 Uncharacterized conser 87.0 28 0.00061 33.0 17.9 173 219-404 251-450 (665)
401 KOG1920 IkappaB kinase complex 86.8 43 0.00093 34.9 19.8 29 418-446 1068-1096(1265)
402 COG3947 Response regulator con 86.6 10 0.00022 32.3 9.5 73 123-204 281-353 (361)
403 PF12854 PPR_1: PPR repeat 86.5 2.1 4.5E-05 22.8 3.9 26 248-273 7-32 (34)
404 PF14561 TPR_20: Tetratricopep 86.4 8.5 0.00018 26.4 10.5 36 117-152 18-53 (90)
405 COG5107 RNA14 Pre-mRNA 3'-end 86.3 27 0.00058 32.0 19.6 122 299-442 408-530 (660)
406 PRK13184 pknD serine/threonine 86.2 44 0.00096 34.5 28.4 110 125-242 479-588 (932)
407 COG3947 Response regulator con 86.2 7.6 0.00017 33.0 8.6 65 289-361 280-344 (361)
408 PF09670 Cas_Cas02710: CRISPR- 85.8 28 0.0006 31.8 16.9 66 123-193 133-198 (379)
409 smart00101 14_3_3 14-3-3 homol 85.3 21 0.00046 30.0 19.8 180 167-360 4-201 (244)
410 PF07720 TPR_3: Tetratricopept 85.1 3.4 7.4E-05 22.4 4.2 29 374-402 2-32 (36)
411 KOG2908 26S proteasome regulat 83.8 29 0.00063 30.4 21.4 98 257-355 84-182 (380)
412 KOG0276 Vesicle coat complex C 83.6 11 0.00023 35.8 9.1 50 130-193 646-695 (794)
413 PF07720 TPR_3: Tetratricopept 83.3 4.4 9.6E-05 22.0 4.2 29 122-150 2-32 (36)
414 PHA02537 M terminase endonucle 83.1 17 0.00037 30.1 9.3 112 339-451 92-215 (230)
415 KOG0917 Uncharacterized conser 82.6 7.2 0.00016 32.4 6.9 17 91-107 318-334 (338)
416 PF01535 PPR: PPR repeat; Int 82.1 2.4 5.3E-05 21.5 3.0 27 332-358 2-28 (31)
417 cd02682 MIT_AAA_Arch MIT: doma 81.5 11 0.00023 24.7 6.2 34 330-363 6-39 (75)
418 PF07163 Pex26: Pex26 protein; 81.5 33 0.00071 29.3 13.1 140 290-438 37-182 (309)
419 PF01535 PPR: PPR repeat; Int 81.3 3.2 6.8E-05 21.0 3.3 27 375-401 2-28 (31)
420 PRK15180 Vi polysaccharide bio 81.2 11 0.00023 34.6 8.0 124 299-446 300-423 (831)
421 PF13041 PPR_2: PPR repeat fam 81.1 8.8 0.00019 22.5 5.6 30 330-359 3-32 (50)
422 COG5178 PRP8 U5 snRNP spliceos 80.7 1.7 3.6E-05 43.9 3.3 15 1-15 1-15 (2365)
423 KOG1310 WD40 repeat protein [G 80.7 7.4 0.00016 36.1 7.0 86 134-236 387-475 (758)
424 KOG2758 Translation initiation 79.6 41 0.00089 29.3 16.5 192 71-278 125-318 (432)
425 TIGR00756 PPR pentatricopeptid 79.1 4.8 0.0001 20.9 3.7 27 332-358 2-28 (35)
426 PF13041 PPR_2: PPR repeat fam 79.0 11 0.00023 22.1 5.5 29 289-317 4-32 (50)
427 cd02683 MIT_1 MIT: domain cont 78.7 16 0.00035 24.1 7.1 37 74-111 5-41 (77)
428 PF04212 MIT: MIT (microtubule 78.7 15 0.00032 23.6 7.1 36 75-111 5-40 (69)
429 KOG1923 Rac1 GTPase effector F 78.2 13 0.00029 36.1 8.1 57 386-442 686-744 (830)
430 PF05053 Menin: Menin; InterP 77.7 66 0.0014 30.6 13.0 79 205-286 276-356 (618)
431 TIGR00756 PPR pentatricopeptid 77.7 6.2 0.00013 20.5 3.8 27 375-401 2-28 (35)
432 PF04097 Nic96: Nup93/Nic96; 77.2 79 0.0017 31.2 16.4 33 327-359 411-443 (613)
433 PF10373 EST1_DNA_bind: Est1 D 77.0 28 0.0006 30.0 9.7 62 225-300 1-62 (278)
434 PRK15180 Vi polysaccharide bio 75.7 9.7 0.00021 34.8 6.3 124 259-405 300-423 (831)
435 KOG0276 Vesicle coat complex C 75.5 12 0.00026 35.4 6.9 51 256-317 645-695 (794)
436 PF13812 PPR_3: Pentatricopept 75.4 8.6 0.00019 19.9 4.0 28 331-358 2-29 (34)
437 cd02681 MIT_calpain7_1 MIT: do 75.0 21 0.00045 23.5 7.2 35 74-109 5-39 (76)
438 cd02679 MIT_spastin MIT: domai 73.8 23 0.00051 23.5 6.7 32 376-407 11-42 (79)
439 PF10373 EST1_DNA_bind: Est1 D 73.7 7.2 0.00016 33.7 5.2 44 307-358 1-44 (278)
440 KOG1310 WD40 repeat protein [G 73.4 30 0.00066 32.4 8.7 85 303-404 389-476 (758)
441 PF04097 Nic96: Nup93/Nic96; 73.2 1E+02 0.0022 30.5 17.7 108 284-399 410-531 (613)
442 COG3914 Spy Predicted O-linked 72.9 64 0.0014 30.8 10.8 109 200-317 62-171 (620)
443 KOG2063 Vacuolar assembly/sort 72.7 1.2E+02 0.0026 31.2 13.4 189 123-316 506-712 (877)
444 COG3914 Spy Predicted O-linked 72.5 93 0.002 29.8 14.1 112 284-407 64-176 (620)
445 COG5091 SGT1 Suppressor of G2 72.4 17 0.00036 30.5 6.3 59 262-320 53-111 (368)
446 KOG3807 Predicted membrane pro 72.2 68 0.0015 28.1 16.1 105 91-234 199-303 (556)
447 KOG2582 COP9 signalosome, subu 71.6 75 0.0016 28.4 12.1 109 164-276 102-211 (422)
448 COG3014 Uncharacterized protei 71.6 72 0.0016 28.2 15.9 202 95-362 40-245 (449)
449 cd02679 MIT_spastin MIT: domai 71.5 13 0.00028 24.7 4.6 31 419-449 13-43 (79)
450 cd02678 MIT_VPS4 MIT: domain c 71.4 26 0.00056 23.0 7.3 37 74-111 5-41 (75)
451 PF10938 YfdX: YfdX protein; 70.9 47 0.001 25.7 10.5 113 78-192 5-145 (155)
452 KOG0508 Ankyrin repeat protein 70.7 13 0.00029 33.9 5.9 137 119-260 243-391 (615)
453 PF07079 DUF1347: Protein of u 70.7 90 0.0019 28.9 31.6 147 76-238 7-160 (549)
454 COG2912 Uncharacterized conser 68.8 70 0.0015 27.3 9.4 70 285-362 178-247 (269)
455 cd02680 MIT_calpain7_2 MIT: do 68.8 16 0.00034 24.0 4.5 31 414-444 6-36 (75)
456 KOG3024 Uncharacterized conser 68.2 77 0.0017 27.2 11.9 134 86-229 17-150 (312)
457 KOG2582 COP9 signalosome, subu 67.9 25 0.00054 31.1 6.7 108 290-401 104-211 (422)
458 KOG4279 Serine/threonine prote 67.8 1E+02 0.0022 30.6 11.1 182 116-317 196-395 (1226)
459 cd02683 MIT_1 MIT: domain cont 67.6 33 0.00071 22.7 7.1 32 167-198 9-40 (77)
460 PF12309 KBP_C: KIF-1 binding 67.5 99 0.0021 28.2 17.6 61 347-407 266-343 (371)
461 cd02684 MIT_2 MIT: domain cont 67.4 32 0.0007 22.5 7.2 37 74-111 5-41 (75)
462 KOG4849 mRNA cleavage factor I 66.8 89 0.0019 27.4 10.1 35 76-111 374-408 (498)
463 KOG4521 Nuclear pore complex, 66.6 1.8E+02 0.0039 30.8 17.4 133 121-266 920-1072(1480)
464 KOG1920 IkappaB kinase complex 65.4 1.9E+02 0.0041 30.7 20.5 24 292-315 1003-1026(1265)
465 KOG2034 Vacuolar sorting prote 65.3 1.6E+02 0.0035 29.9 15.1 194 168-398 362-555 (911)
466 smart00745 MIT Microtubule Int 64.8 37 0.0008 22.3 7.4 37 74-111 7-43 (77)
467 cd02681 MIT_calpain7_1 MIT: do 64.8 38 0.00081 22.3 7.9 30 291-320 9-38 (76)
468 cd02656 MIT MIT: domain contai 64.5 37 0.0008 22.2 7.3 36 75-111 6-41 (75)
469 KOG2063 Vacuolar assembly/sort 63.6 1.8E+02 0.004 29.9 12.5 187 251-442 507-712 (877)
470 COG5091 SGT1 Suppressor of G2 62.7 20 0.00043 30.1 5.0 61 386-447 52-112 (368)
471 cd02677 MIT_SNX15 MIT: domain 62.2 42 0.00091 22.0 7.6 37 74-111 5-41 (75)
472 KOG3807 Predicted membrane pro 62.1 1.1E+02 0.0024 26.9 17.7 57 172-238 192-248 (556)
473 PF10938 YfdX: YfdX protein; 61.2 75 0.0016 24.6 9.7 109 292-401 6-145 (155)
474 COG2178 Predicted RNA-binding 61.2 85 0.0018 25.2 9.9 130 188-328 20-161 (204)
475 smart00745 MIT Microtubule Int 61.0 44 0.00096 21.9 6.6 28 335-362 13-40 (77)
476 PF04212 MIT: MIT (microtubule 60.6 41 0.0009 21.4 8.5 29 251-279 8-36 (69)
477 cd02677 MIT_SNX15 MIT: domain 60.6 31 0.00067 22.6 4.8 27 421-447 13-39 (75)
478 COG5178 PRP8 U5 snRNP spliceos 60.4 8.1 0.00018 39.5 2.9 7 95-101 114-120 (2365)
479 PRK12798 chemotaxis protein; R 59.6 1.4E+02 0.0031 27.3 19.3 215 69-313 106-320 (421)
480 PRK09169 hypothetical protein; 58.5 3.5E+02 0.0076 31.4 18.0 36 419-454 752-787 (2316)
481 KOG0546 HSP90 co-chaperone CPR 58.2 18 0.00039 31.8 4.3 101 253-361 227-340 (372)
482 PF04840 Vps16_C: Vps16, C-ter 56.9 1.4E+02 0.0031 26.5 23.9 79 330-438 208-286 (319)
483 KOG2396 HAT (Half-A-TPR) repea 55.9 1.8E+02 0.004 27.4 11.1 65 289-361 106-171 (568)
484 smart00671 SEL1 Sel1-like repe 55.3 29 0.00064 18.1 3.6 28 415-442 2-33 (36)
485 KOG0546 HSP90 co-chaperone CPR 55.3 21 0.00045 31.5 4.2 122 213-348 229-361 (372)
486 cd02678 MIT_VPS4 MIT: domain c 54.6 58 0.0013 21.3 7.2 53 167-219 9-62 (75)
487 KOG0128 RNA-binding protein SA 54.5 2.5E+02 0.0054 28.5 24.9 406 33-476 71-481 (881)
488 KOG0508 Ankyrin repeat protein 54.4 1.9E+02 0.0041 27.1 10.1 182 218-400 258-469 (615)
489 KOG3671 Actin regulatory prote 54.0 62 0.0013 30.0 6.9 61 1-62 387-447 (569)
490 PF09205 DUF1955: Domain of un 54.0 91 0.002 23.3 6.8 55 381-442 94-148 (161)
491 PRK15313 autotransport protein 53.5 72 0.0016 32.6 7.9 85 2-86 566-653 (955)
492 TIGR02710 CRISPR-associated pr 53.3 1.8E+02 0.0039 26.6 14.3 117 120-238 129-278 (380)
493 PF10152 DUF2360: Predicted co 53.2 93 0.002 23.8 7.0 77 1-81 47-123 (148)
494 PRK14950 DNA polymerase III su 53.2 43 0.00094 32.8 6.6 61 1-61 398-458 (585)
495 cd09241 BRO1_ScRim20-like Prot 53.1 1.8E+02 0.0039 26.4 13.6 150 286-446 104-269 (355)
496 KOG0559 Dihydrolipoamide succi 52.8 40 0.00086 29.7 5.4 50 2-51 169-219 (457)
497 COG2912 Uncharacterized conser 52.8 34 0.00074 29.1 5.0 75 365-446 173-247 (269)
498 COG4455 ImpE Protein of avirul 52.4 1.3E+02 0.0029 24.8 8.3 131 166-316 3-133 (273)
499 PF09205 DUF1955: Domain of un 52.3 98 0.0021 23.2 7.3 55 296-358 94-148 (161)
500 PF01690 PLRV_ORF5: Potato lea 52.3 15 0.00032 33.7 3.0 26 25-51 3-28 (465)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=276.10 Aligned_cols=343 Identities=20% Similarity=0.209 Sum_probs=265.7
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHH
Q 011858 65 TDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPAL 144 (476)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (476)
.......|..++.+.++|..+..+|+ +++|+.+|+.++++ +|+.+++|.++|.++...|+.+.|...|
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel-----------~p~fida~inla~al~~~~~~~~a~~~~ 173 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIEL-----------KPKFIDAYINLAAALVTQGDLELAVQCF 173 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhc-----------CchhhHHHhhHHHHHHhcCCCcccHHHH
Confidence 34456788899999999999999995 99999999999986 6777888999999999999999999999
Q ss_pred HHhhhhccccCCCch-------------hH------------HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 145 EKAISVPDVTRGADH-------------AL------------AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 145 ~~al~~~~~~~~~~~-------------~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
.+++++.+....... .. ..+-+|.+||.++..+|+...|+.+|++++.+
T Consensus 174 ~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl------ 247 (966)
T KOG4626|consen 174 FEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------ 247 (966)
T ss_pred HHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC------
Confidence 988888752210000 00 00123666677777777777777777777666
Q ss_pred CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
+|....+|.+||.+|...+.|++|+.+|.+++.+.+. .+.++.++|.+|..+|..+-|+..|+++++
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn--------~A~a~gNla~iYyeqG~ldlAI~~Ykral~--- 314 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN--------HAVAHGNLACIYYEQGLLDLAIDTYKRALE--- 314 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc--------chhhccceEEEEeccccHHHHHHHHHHHHh---
Confidence 6777777888888888888888888888877765433 345577778888888888888888887765
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
..|....+++++|..+...|+..+|..+|.+++.+ .+..+.+.++||.+|.++|.+++|..+|++++++
T Consensus 315 ---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 315 ---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred ---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 45666778888888888888888888888888888 6777888888888888888888888888888887
Q ss_pred HcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 360 YARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
.+. .+.++.+||.+|.++|++++|+.+|++++.+.+.. +.++.++|..|..+|+.+.|+.+|.+
T Consensus 384 ~p~---------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-------Ada~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 384 FPE---------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-------ADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred Chh---------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-------HHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 543 57788888888888888888888888888776665 48888888888888888888888888
Q ss_pred HHHHHHHhcccCchhhhhhhcccccccccccccc
Q 011858 440 AIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDR 473 (476)
Q Consensus 440 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 473 (476)
|+.+ .+.++.+..+||.+|...|+..
T Consensus 448 AI~~--------nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 448 AIQI--------NPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHhc--------CcHHHHHHhhHHHHhhccCCcH
Confidence 8863 3556788888888888877654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-38 Score=270.82 Aligned_cols=335 Identities=21% Similarity=0.267 Sum_probs=286.6
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhh-----------------------ccCCChhHHHHH
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAA-----------------------EAEPSLDYAMSL 124 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~-----------------------~~~~~~~~~~~~ 124 (476)
..-.|+.++++..+|.++...|+ .+.|...|.+|+++....... .....|..+.+|
T Consensus 143 iel~p~fida~inla~al~~~~~-~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaw 221 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAALVTQGD-LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAW 221 (966)
T ss_pred HhcCchhhHHHhhHHHHHHhcCC-CcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeee
Confidence 45678888888888888888885 888888888888863211110 001245566678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
.+||.++..+|+...|+..|++|+.+.+... .+|++||.+|...+.|++|+.+|.+++.+ .|.
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP~f~---------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn 284 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL---------DAYINLGNVYKEARIFDRAVSCYLRALNL--------RPN 284 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCCcch---------HHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCc
Confidence 8888888888999999999999888876432 67999999999999999999999999987 788
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
.+.++.++|.+|+.+|..+-|+..|++++++.+...+ +++++|..+...|+..+|..+|.+++.+.
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~--------Ay~NlanALkd~G~V~ea~~cYnkaL~l~------ 350 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD--------AYNNLANALKDKGSVTEAVDCYNKALRLC------ 350 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH--------HHhHHHHHHHhccchHHHHHHHHHHHHhC------
Confidence 8999999999999999999999999999998766544 39999999999999999999999998853
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
+..+.+.+++|.+|..+|.+++|..+|.++++. .|..+.+..+||.+|.++|++++|+.+|++++++.+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P--- 419 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP--- 419 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc---
Confidence 566888999999999999999999999999999 789999999999999999999999999999999853
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
..++++.++|..|..+|+.+.|+..|.+|+.+.+.. ++++.+||.+|...|+..+|+..|++++.+-
T Consensus 420 ------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-------AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 420 ------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-------AEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred ------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-------HHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 469999999999999999999999999999887766 5999999999999999999999999999753
Q ss_pred HHhcccCchhhhhhhccccccc
Q 011858 445 RASGERKSAFFRSCVEPDGIGL 466 (476)
Q Consensus 445 ~~~~~~~~~~~~~~~~~l~~~~ 466 (476)
+....++.++..+.
T Consensus 487 --------PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 487 --------PDFPDAYCNLLHCL 500 (966)
T ss_pred --------CCCchhhhHHHHHH
Confidence 22224556665554
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.1e-29 Score=223.83 Aligned_cols=375 Identities=22% Similarity=0.255 Sum_probs=305.8
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh---
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI--- 148 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--- 148 (476)
+......+..+......|..+.+.+....++++.+.+... .....-+......+...+.+++|....++..
T Consensus 85 ~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~------~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~ 158 (508)
T KOG1840|consen 85 EAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVA------QLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTP 158 (508)
T ss_pred chhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 3444455566666666655566666666666665544422 1111123334444444444555544443332
Q ss_pred --------------------------hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc
Q 011858 149 --------------------------SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 149 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
.+.....+..+|.. ..+...++..|..+|+|++|+..++++++...+..|.++
T Consensus 159 ~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h 237 (508)
T KOG1840|consen 159 VKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPER-LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH 237 (508)
T ss_pred hhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC
Confidence 22222233333332 355677999999999999999999999999999889889
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA-- 280 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-- 280 (476)
+.+...+..+|.+|..++++++|+..|++++.+.....+..++..+.++.+||.+|...|++++|..++++|+++...
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
...++.....+.+++.++..++++++|+.+++++++++....+.+++..+..+.+||.+|..+|++++|.+++++++.+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
++.. +..+......++.+|..|.+.+++.+|.+.|.++..+.+....+++.+...+.+|+.+|..+|++++|+++.+++
T Consensus 398 ~~~~-~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 398 RELL-GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred Hhcc-cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8865 555777788999999999999999999999999999996664466788899999999999999999999999999
Q ss_pred HHHHHHhcccCchh
Q 011858 441 IAKLRASGERKSAF 454 (476)
Q Consensus 441 ~~~~~~~~~~~~~~ 454 (476)
+...+..++..++.
T Consensus 477 ~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 477 LNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHcCCCCCcc
Confidence 98888776655444
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=9.6e-30 Score=225.97 Aligned_cols=290 Identities=26% Similarity=0.362 Sum_probs=268.6
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
..|....+...++..|...|+|++|+..+++++++..+..+..++... .....+|.+|..++++.+|+..|++|+.+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va-~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA-SMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 578888889999999999999999999999999998878887777654 4456799999999999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
..+|.+++.++.++.+||.+|...|++++|..++++++++........+...+..+.+++.++..++++++|..++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997777788899999999999999999999999999999
Q ss_pred HHHHH--cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 276 MAMIA--NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 276 ~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
++... ..+++..+.++.++|.+|..+|++++|.++|++++.+.++..+..+......+.++|..|.+.+++.+|...|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 98883 3445688999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG 408 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 408 (476)
.++..+.+.. +.+++.....+.+|+.+|..+|++++|+++.++++.......+
T Consensus 433 ~~~~~i~~~~--g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~ 485 (508)
T KOG1840|consen 433 EEAKDIMKLC--GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLG 485 (508)
T ss_pred HHHHHHHHHh--CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCC
Confidence 9999999544 7888899999999999999999999999999999988777644
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.3e-30 Score=247.44 Aligned_cols=340 Identities=14% Similarity=0.074 Sum_probs=264.6
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+..+..+|..++..| ++++|+..|++++.+. |+ ...+.++|.+|..+|++++|+..+++++++.+.
T Consensus 126 ~a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~~-----------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNK-DFNKAIKLYSKAIECK-----------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-----------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 3566889999999999 5999999999999862 22 347889999999999999999999999988642
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHH------------------------------------------
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGL------------------------------------------ 191 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------------------------------ 191 (476)
. ..++..+|.+|..+|++++|+..|..+.
T Consensus 193 ~---------~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~ 263 (615)
T TIGR00990 193 Y---------SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTF 263 (615)
T ss_pred C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 2 2568889999999999998876554332
Q ss_pred ---------------------------------------------------HHHHHHhc--CCchhHHHHHHHHHHHHHH
Q 011858 192 ---------------------------------------------------KIQIEALG--ETDPRVGETCRYLAEAHVQ 218 (476)
Q Consensus 192 ---------------------------------------------------~~~~~~~~--~~~~~~~~~~~~la~~~~~ 218 (476)
+.+...+. ...+....++..+|.++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~ 343 (615)
T TIGR00990 264 VGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL 343 (615)
T ss_pred HHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 11111111 1134556678889999999
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
+|++++|+..+++++++.+. ...++..+|.++...|++++|+..+++++.. .+....++..+|.++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPR--------VTQSYIKRASMNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLH 409 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence 99999999999999887533 3445888999999999999999999998764 344467889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTE 378 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (476)
...|++++|+.+|++++++ .|.....+..+|.++..+|++++|+..|++++...+. ...++..
T Consensus 410 ~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---------~~~~~~~ 472 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---------APDVYNY 472 (615)
T ss_pred HHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHH
Confidence 9999999999999999998 6777888999999999999999999999999987543 2668889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhh
Q 011858 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSC 458 (476)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 458 (476)
+|.++..+|++++|+..|++++.+.+............+...+.++...|++++|+.++++++.+. +.. ..+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~---~~a 544 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC---DIA 544 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc---HHH
Confidence 999999999999999999999998776533222222233333334445789999999999988752 111 135
Q ss_pred hccccccccccccccc
Q 011858 459 VEPDGIGLCPVVQDRR 474 (476)
Q Consensus 459 ~~~l~~~~~~~g~~~~ 474 (476)
+..+|.++..+|++..
T Consensus 545 ~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 545 VATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHHHHHccCHHH
Confidence 6677888888877653
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=5.8e-29 Score=237.88 Aligned_cols=327 Identities=18% Similarity=0.191 Sum_probs=261.6
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
-.|+ ...+..+|.++...| ++++|+..+++++++ +|+...+++.+|.+|..+|++++|+..|..+..
T Consensus 156 ~~p~-~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l-----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~ 222 (615)
T TIGR00990 156 CKPD-PVYYSNRAACHNALG-DWEKVVEDTTAALEL-----------DPDYSKALNRRANAYDGLGKYADALLDLTASCI 222 (615)
T ss_pred cCCc-hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3454 567899999999999 499999999999986 567788999999999999999999876654321
Q ss_pred hcc------------------------------cc---------------------------------------------
Q 011858 150 VPD------------------------------VT--------------------------------------------- 154 (476)
Q Consensus 150 ~~~------------------------------~~--------------------------------------------- 154 (476)
+.. ..
T Consensus 223 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (615)
T TIGR00990 223 IDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSP 302 (615)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHH
Confidence 100 00
Q ss_pred ------------------C--CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011858 155 ------------------R--GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAE 214 (476)
Q Consensus 155 ------------------~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 214 (476)
. +...+ ....++..+|.++..+|++++|+..|++++++ +|....++..+|.
T Consensus 303 e~~~~~~y~~A~~~~~~al~~~~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~ 373 (615)
T TIGR00990 303 ESKADESYEEAARAFEKALDLGKLGE-KEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRAS 373 (615)
T ss_pred HhhhhhhHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHH
Confidence 0 00001 11245788899999999999999999999987 6677889999999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 215 AHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
++...|++++|+.++++++++.+. ...++..+|.++...|++++|+.+|++++.+ .+.....+.++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l------~P~~~~~~~~l 439 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSE--------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL------DPDFIFSHIQL 439 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CccCHHHHHHH
Confidence 999999999999999999887432 2455889999999999999999999999763 34556778899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
|.++..+|++++|+..|++++.. .|....++..+|.++..+|++++|+..|++++.+.+... ........
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~--~~~~~~~~ 509 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK--PMYMNVLP 509 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc--cccccHHH
Confidence 99999999999999999999987 677788999999999999999999999999999865521 11112222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
.+...+.++...|++++|+.++++++.+.++.. .++..+|.++..+|++++|+.+|++++++.+..++
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~-------~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECD-------IAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 233333444557999999999999998865542 57789999999999999999999999998775443
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.96 E-value=5e-28 Score=200.37 Aligned_cols=315 Identities=15% Similarity=0.150 Sum_probs=276.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
..-|.-+++.|++...+.+|+.|++.-. ++......+|..||..|+..++|++|+++...-+.+.+.+ .+...
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGT-----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklG 93 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGT-----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLG 93 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcc-----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhc
Confidence 3457778899999999999999998853 3444444679999999999999999999998888776665 33445
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC--------------------H
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD--------------------Y 264 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~ 264 (476)
.+.+..+||+++.-+|.|++|+.++.+-+.+.++.++. ...+.+++++|.+|...|+ +
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 66788899999999999999999999999999998886 4778899999999998764 5
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC
Q 011858 265 EAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG 344 (476)
Q Consensus 265 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 344 (476)
+.|.++|.+-+++....++......++-++|+.|+.+|+|+.|+.+.+.-+.+.++. ++....-.++.++|.++.-.|
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhc
Confidence 677888888888888999988899999999999999999999999999999999887 556667789999999999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 011858 345 KLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF 424 (476)
Q Consensus 345 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (476)
+++.|+++|+..+.+..++. +....+...+.+|..|.-..++++|+.|+.+-+.+..+. ++......+++.||..|
T Consensus 250 ~fe~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAF 325 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHH
Confidence 99999999999999988863 455568889999999999999999999999999999988 78888889999999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 425 YMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 425 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
...|..++|+.+.++.+++..+.++.....
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 999999999999999999999998876443
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=8.9e-27 Score=221.87 Aligned_cols=318 Identities=15% Similarity=0.111 Sum_probs=262.6
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHH
Q 011858 64 FTDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPA 143 (476)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (476)
+......+|+....+..++......| ++++|+..+++++.+ +|....++..+|.++...|++++|+..
T Consensus 65 ~~~~l~~~p~~~~~l~~l~~~~l~~g-~~~~A~~~l~~~l~~-----------~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 65 LSDRVLTAKNGRDLLRRWVISPLASS-QPDAVLQVVNKLLAV-----------NVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred hHHHHHhCCCchhHHHHHhhhHhhcC-CHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 45566778889999999999999998 599999999999885 567778899999999999999999999
Q ss_pred HHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHH
Q 011858 144 LEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFD 223 (476)
Q Consensus 144 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 223 (476)
|++++.+.+.. . .++..++.++...|++++|+..+++++.. .|.....+..++ .+...|+++
T Consensus 133 l~~Al~l~P~~-----~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~P~~~~a~~~~~-~l~~~g~~~ 194 (656)
T PRK15174 133 AEQAWLAFSGN-----S----QIFALHLRTLVLMDKELQAISLARTQAQE--------VPPRGDMIATCL-SFLNKSRLP 194 (656)
T ss_pred HHHHHHhCCCc-----H----HHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CCCCHHHHHHHH-HHHHcCCHH
Confidence 99999986532 1 45888999999999999999999987765 233334444443 478899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCR 303 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (476)
+|+..++++++..+... ......++.++...|++++|+..+++++.. .+....++..+|.++...|+
T Consensus 195 eA~~~~~~~l~~~~~~~-------~~~~~~l~~~l~~~g~~~eA~~~~~~al~~------~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 195 EDHDLARALLPFFALER-------QESAGLAVDTLCAVGKYQEAIQTGESALAR------GLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHHHHHHhcCCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC
Confidence 99999998876532111 112355688899999999999999998763 34457788999999999999
Q ss_pred HHH----HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 304 FDE----AVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 304 ~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
+++ |+..|++++++ .|....++..+|.++...|++++|+.++++++.+.+. ...++..+
T Consensus 262 ~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---------~~~a~~~L 324 (656)
T PRK15174 262 SREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---------LPYVRAMY 324 (656)
T ss_pred chhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHH
Confidence 986 89999999998 7788899999999999999999999999999997443 25678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q 011858 380 SAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASG 448 (476)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 448 (476)
|.++...|++++|+..|++++...+... ..+..+|.++...|++++|+..|+++++..++..
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~-------~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTS-------KWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccch-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999988755432 4555678999999999999999999998866654
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1e-25 Score=214.64 Aligned_cols=327 Identities=12% Similarity=0.025 Sum_probs=264.9
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
.+....+...+......|+ +++|+..++..+.. .|....+++.+|.+....|++++|+..|++++...
T Consensus 39 ~~~~~~~~~~~~~~~~~g~-~~~A~~l~~~~l~~-----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~ 106 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDE-TDVGLTLLSDRVLT-----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN 106 (656)
T ss_pred cccccCHHHHHHHHHhcCC-cchhHHHhHHHHHh-----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC
Confidence 3445566777888899995 99999999998884 56778899999999999999999999999999987
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
+.. + .++..+|.++...|++++|+..|++++.+ .|....++..++.++...|++++|+..+++
T Consensus 107 P~~-----~----~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 107 VCQ-----P----EDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CCC-----h----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 632 2 45899999999999999999999999987 566778899999999999999999999998
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSY 311 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 311 (476)
++...+... ..+..++ .+...|++++|+..+++++... + .........++.++...|++++|+..+
T Consensus 170 ~~~~~P~~~--------~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~---~--~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 170 QAQEVPPRG--------DMIATCL-SFLNKSRLPEDHDLARALLPFF---A--LERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred HHHhCCCCH--------HHHHHHH-HHHHcCCHHHHHHHHHHHHhcC---C--CcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 776554321 1233333 4788999999999998875431 1 111223356788999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011858 312 QKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE----SKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD 387 (476)
Q Consensus 312 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (476)
++++.. .+....++..+|.++...|++++ |+..|++++++.+. ...++..+|.++...|
T Consensus 236 ~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---------~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 236 ESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---------NVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHCC
Confidence 999987 67778999999999999999986 89999999998543 3678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccc
Q 011858 388 EPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLC 467 (476)
Q Consensus 388 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (476)
++++|+.++++++.+.+... .++..+|.++...|++++|+..|++++..... . ......+|.++.
T Consensus 299 ~~~eA~~~l~~al~l~P~~~-------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-----~---~~~~~~~a~al~ 363 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLP-------YVRAMYARALRQVGQYTAASDEFVQLAREKGV-----T---SKWNRYAAAALL 363 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----c---hHHHHHHHHHHH
Confidence 99999999999999876654 67888999999999999999999998864221 1 122334466666
Q ss_pred cccccc
Q 011858 468 PVVQDR 473 (476)
Q Consensus 468 ~~g~~~ 473 (476)
.+|++.
T Consensus 364 ~~G~~d 369 (656)
T PRK15174 364 QAGKTS 369 (656)
T ss_pred HCCCHH
Confidence 666654
No 10
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-26 Score=190.08 Aligned_cols=334 Identities=14% Similarity=0.137 Sum_probs=279.4
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
-+..-|.-+++.|+ ....+.+|+.|++.-.. +-.....+|..||..|+.+++|++|+++...-+.+.....+
T Consensus 19 eLalEGERLck~gd-craGv~ff~aA~qvGTe-------Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd 90 (639)
T KOG1130|consen 19 ELALEGERLCKMGD-CRAGVDFFKAALQVGTE-------DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD 90 (639)
T ss_pred HHHHHHHHHHhccc-hhhhHHHHHHHHHhcch-------HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc
Confidence 34556778899995 99999999999997322 23345667899999999999999999998877666543221
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc---------------
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ--------------- 221 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------- 221 (476)
. .. .+.+.-+||.++-..|.|++|+.+..+-+.+.+++ .+......+++++|.+|...|+
T Consensus 91 k-lG--EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 91 K-LG--EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred h-hc--cccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 1 11 12457899999999999999999999999999886 4455677899999999998765
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011858 222 -----FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGN 296 (476)
Q Consensus 222 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 296 (476)
++.|.++|..-+++....++. .....++.+||..|+.+|+|+.|+..-+.-+.+.+..++......++.++|+
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr--~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDR--LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH--HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccch
Confidence 567888888888888887775 3567789999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGL 376 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (476)
++.-+|+++.|+++|+..+.++.++ ++....+...+.||..|.-..++++|+.|+.+-+.|.++.. +......++
T Consensus 244 ~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~---DriGe~Rac 318 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE---DRIGELRAC 318 (639)
T ss_pred hhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHH
Confidence 9999999999999999999999888 56667788899999999999999999999999999988753 445568899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHH
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYE 431 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (476)
+.+|..+...|..++|+.+.++.+++..+. ++.........++...-...|..+
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~s~ev-~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRSSLEV-NDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-CCcchhhhhhhhhHHHHHHhCCCc
Confidence 999999999999999999999999998887 666544555567777766666544
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.7e-25 Score=227.67 Aligned_cols=351 Identities=13% Similarity=0.120 Sum_probs=252.4
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCch
Q 011858 80 KLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADH 159 (476)
Q Consensus 80 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 159 (476)
.+|..+...| ++++|+..|+++++. .|....++..+|.++...|++++|+.+|+++++..+.......
T Consensus 274 ~~G~~~~~~g-~~~~A~~~l~~aL~~-----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 274 AQGLAAVDSG-QGGKAIPELQQAVRA-----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 4578888998 599999999999985 4666789999999999999999999999999998764322111
Q ss_pred hH-----HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 160 AL-----AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 160 ~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
.. ........+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|+.+|+++++
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 01223456788999999999999999999987 556677899999999999999999999999998
Q ss_pred HHHhcCCCCc----------------------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 011858 235 IHRAHSEPAS----------------------------------LEESADRRLMALICEAKGDYEAALEHLVLASMAMIA 280 (476)
Q Consensus 235 ~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 280 (476)
+.+....... ......+..+|.++...|++++|++.|++++..
T Consensus 414 ~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--- 490 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--- 490 (1157)
T ss_pred hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 7544221100 000112345677788899999999999998763
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-------------C------------------------
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSK-------------G------------------------ 323 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~------------------------ 323 (476)
.+....+++.+|.+|...|++++|+..++++++...... +
T Consensus 491 ---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 491 ---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 344456788899999999999999999988876411000 0
Q ss_pred -----------------------------CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 324 -----------------------------DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 324 -----------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
...|.....+..+|.++...|++++|+..|+++++..+. ...
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---------~~~ 638 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG---------NAD 638 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHH
Confidence 001122335566778888888888888888888876432 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
++..++.++...|++++|++.++++++..+... .++..+|.++...|++++|+++|++++...+..... ..
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~--~~ 709 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSL-------NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS--ME 709 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc--hh
Confidence 778888888888888888888887766544332 566778888888888888888888888654332211 11
Q ss_pred hhhhhccccccccccccccc
Q 011858 455 FRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~ 474 (476)
.+.++..+|.++...|++.+
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHH
Confidence 22444555666666665543
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=7.5e-25 Score=222.88 Aligned_cols=338 Identities=18% Similarity=0.212 Sum_probs=227.4
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
...+|.....+..++..+...| ++++|+..+++++.. .+.....+..++.++...|++++|+..++++
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTG-NEEEAVAWLEKAAEL-----------NPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-----------CccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3446667777888888888887 488888888777654 2223334555566666666666666666655
Q ss_pred hhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHH
Q 011858 148 ISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEE 227 (476)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 227 (476)
+...+. +. .++..+|.++...|++++|+..|+++++. .+....++..+|.++...|++++|+.
T Consensus 594 ~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 594 ADAAPD-----SP----EAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHcCCC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 544321 11 23555555555556666666555555543 22333445555555555555555555
Q ss_pred HHHHHHHHHHhcCCC--------------------------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 228 LCKKTLEIHRAHSEP--------------------------ASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 228 ~~~~al~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
.++++++..+..... ..+.....+..+|.++...|++++|+..|++++...
T Consensus 657 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--- 733 (899)
T TIGR02917 657 SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--- 733 (899)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---
Confidence 555555432221000 001123346667888888888888888888776532
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
++. ..+..++.++...|++++|+..++++++. .+....++..+|.++...|++++|+.+|+++++..+
T Consensus 734 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 734 PSS----QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred CCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 111 45667888888888888888888888876 566678889999999999999999999999988743
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
. ...++..++.++...|+ .+|+.++++++.+.+..+ .++..+|.++...|++++|+.+|++++
T Consensus 802 ~---------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 802 D---------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP-------AILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred C---------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 25678888999999999 889999999998766553 567789999999999999999999999
Q ss_pred HHHHHhcccCchhhhhhhccccccccccccccc
Q 011858 442 AKLRASGERKSAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
+.... + ..++..++.++...|++.+
T Consensus 865 ~~~~~--~------~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 865 NIAPE--A------AAIRYHLALALLATGRKAE 889 (899)
T ss_pred hhCCC--C------hHHHHHHHHHHHHcCCHHH
Confidence 75432 1 2466778888888887654
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.6e-23 Score=190.97 Aligned_cols=310 Identities=18% Similarity=0.186 Sum_probs=246.4
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcccc
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVT 154 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 154 (476)
....+..|..+...| ++++|+..|+++++. .|....++..+|.++...|++++|+..+++++....
T Consensus 35 ~~~~y~~g~~~~~~~-~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-- 100 (389)
T PRK11788 35 LSRDYFKGLNFLLNE-QPDKAIDLFIEMLKV-----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-- 100 (389)
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHhc-----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC--
Confidence 345567788888888 599999999999985 456677899999999999999999999999887421
Q ss_pred CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 155 RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
........++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|+..++++++
T Consensus 101 ---~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 101 ---LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 111112346899999999999999999999999875 445567889999999999999999999999887
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
..+... .......+..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.+++++
T Consensus 170 ~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 170 LGGDSL---RVEIAHFYCELAQQALARGDLDAARALLKKALAAD------PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred hcCCcc---hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 543221 12345557789999999999999999999987642 334567888999999999999999999999
Q ss_pred HHHHHhcCCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 315 LTVFKSSKGDNHPS-VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 315 l~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
++. .+. ...++..++.+|...|++++|+..++++++..+. . ..+..++.++...|++++|+
T Consensus 241 ~~~--------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------~----~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 241 EEQ--------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG------A----DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHH--------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c----hHHHHHHHHHHHhCCHHHHH
Confidence 876 333 3567888999999999999999999999887432 1 23478999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHHH
Q 011858 394 KLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM---VGRYEEARSSFESAIAKL 444 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~ 444 (476)
..++++++..++. ..+..+...+.. .|+..+++..+++.++..
T Consensus 303 ~~l~~~l~~~P~~--------~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 303 ALLREQLRRHPSL--------RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHhCcCH--------HHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9999999886554 222233333332 568999999999888643
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3.6e-24 Score=217.93 Aligned_cols=311 Identities=20% Similarity=0.276 Sum_probs=229.9
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
.+|.....+..++..+...| ++++|+..++++++. .+....++..+|.++...|++++|+..|+++++
T Consensus 562 ~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 562 LNPQEIEPALALAQYYLGKG-QLKKALAILNEAADA-----------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred hCccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555556666666666666 366666666666542 223334566666666666666666666666665
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH--------------------------hcCCch
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA--------------------------LGETDP 203 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~~~~~ 203 (476)
..+. ++ .++..+|.++...|++++|+..|+++++..+.. .....+
T Consensus 630 ~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 630 LQPD-----SA----LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred hCCC-----Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5321 11 234556666666666666666665555431110 000123
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
.....+..+|.++...|++++|+..|++++...+.. ..+..++.++...|++++|.+.+++++..
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------ 765 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---------QNAIKLHRALLASGNTAEAVKTLEAWLKT------ 765 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 345567778899999999999999999998765332 33677899999999999999999987662
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
.+....++..+|.++...|++++|+.+|+++++. .|....++..++.++...|+ .+|+.++++++.+.+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~- 835 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN- 835 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-
Confidence 3344678899999999999999999999999987 66778899999999999999 8899999999997543
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 364 VPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
....+..+|.++...|++++|+.+|+++++..+... .++..++.++...|++++|++.+++++
T Consensus 836 --------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 836 --------IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA-------AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred --------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 144677899999999999999999999999877653 788899999999999999999999886
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.6e-24 Score=181.36 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=208.2
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
+.++...|..++..|+.-.|...|..++.+ ++.....|..+|.+|....+-.+....|.++.++.+...+.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv- 396 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV- 396 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch-
Confidence 456777788888899999999999999987 44455559999999999999999999999999998877665
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
|+..|.+++.++++++|+.-|++++. .++..+..+..++.+.+++++++++...|+++...
T Consensus 397 -------YyHRgQm~flL~q~e~A~aDF~Kai~------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------ 457 (606)
T KOG0547|consen 397 -------YYHRGQMRFLLQQYEEAIADFQKAIS------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------ 457 (606)
T ss_pred -------hHhHHHHHHHHHHHHHHHHHHHHHhh------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 88899999999999999999999976 56777889999999999999999999999999988
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAI-YESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~ 402 (476)
.|..+.++...|.++..+++|++|++.|+.++++-+... . ... -+..+...|.+ +.-.+++..|+.++++|+++
T Consensus 458 --FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~-~-~~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 458 --FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH-L-IIV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred --CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc-c-ccc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 688899999999999999999999999999999876521 0 000 01122222222 22358999999999999999
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 403 LEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
.++.. .++..||.+..++|+.++|+++|++++.+.+...+.
T Consensus 533 Dpkce-------~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 533 DPKCE-------QAYETLAQFELQRGKIDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred CchHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 88875 788899999999999999999999999998877554
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.3e-24 Score=216.88 Aligned_cols=317 Identities=14% Similarity=0.131 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.+..+|..+...| ++++|+..|++++++ +|....++..+|.++...|++++|+.+|++++++.+....
T Consensus 353 ~~~~~g~~~~~~g-~~~eA~~~~~~Al~~-----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 353 LLIQQGDAALKAN-NLAQAERLYQQARQV-----------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3455677777887 488888888888875 3445567778888888888888888888888876543210
Q ss_pred Cch---------------------------------hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 157 ADH---------------------------------ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 157 ~~~---------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
... .......+..+|.++...|++++|+..|++++++ .|
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P 492 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DP 492 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Confidence 000 0000123456788999999999999999999987 56
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLA--------- 274 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------- 274 (476)
....+++.+|.+|...|++++|+..++++++..+.. ...++.++..+...+++++|+..+++.
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~--------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND--------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 667889999999999999999999999998754332 122444555555666666665555432
Q ss_pred ----------------------------HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 275 ----------------------------SMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 275 ----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
+.++. ..+.....+..+|.++...|++++|+..|+++++. .
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~ 633 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------E 633 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 11111 12233456788999999999999999999999998 7
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
|....++..++.++...|++++|+..++++++..+. ...++..+|.++...|++++|+++|++++...+..
T Consensus 634 P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND---------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 778899999999999999999999999988765322 24567889999999999999999999999876554
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
+. ....+.++..+|.++...|++++|+.+|++++.
T Consensus 705 ~~-~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 PP-SMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred Cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22 122356677889999999999999999999985
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.6e-24 Score=187.94 Aligned_cols=288 Identities=17% Similarity=0.193 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHc
Q 011858 98 YAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSML 177 (476)
Q Consensus 98 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (476)
..++|+..+.+... ...+...++..+|..|+.+++|++|..+|+.+-++.+-.... .-....+++..
T Consensus 334 ~~~~A~~~~~klp~----h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~---------meiyST~LWHL 400 (638)
T KOG1126|consen 334 NCREALNLFEKLPS----HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG---------MEIYSTTLWHL 400 (638)
T ss_pred HHHHHHHHHHhhHH----hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---------hhHHHHHHHHH
Confidence 34455555555322 455666788899999999999999999999888776532211 11122233332
Q ss_pred CChhhHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 011858 178 GQVDRSIGCY-EEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL 256 (476)
Q Consensus 178 g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 256 (476)
.+-- ++.++ +..++ .++....+|..+|++|..+++++.|+++|++|+++.+. .+.+|..+|.
T Consensus 401 q~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~--------faYayTLlGh 463 (638)
T KOG1126|consen 401 QDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR--------FAYAYTLLGH 463 (638)
T ss_pred HhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc--------cchhhhhcCC
Confidence 2221 22222 22222 26777889999999999999999999999999998754 3455888899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011858 257 ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL 336 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 336 (476)
=+....++|.|..+|+.|+. .++....+|+.+|.+|.++++++.|+-+|++|+++ +|....+...+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~ 529 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALG------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHI 529 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhc------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhh
Confidence 99999999999999999865 56777889999999999999999999999999999 89999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHH
Q 011858 337 ADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGI 416 (476)
Q Consensus 337 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 416 (476)
|.++.+.|+.++|+.+|++|+.+..+. ....+..|.++...+++++|+..+++..++.++.. .+
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn---------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es-------~v 593 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKN---------PLCKYHRASILFSLGRYVEALQELEELKELVPQES-------SV 593 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCC---------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-------HH
Confidence 999999999999999999999986552 45678889999999999999999999999888874 88
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 417 EARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
+..+|.+|...|+.+.|+..|.-|.++-.
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 99999999999999999999999887543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.5e-22 Score=183.18 Aligned_cols=278 Identities=16% Similarity=0.124 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
....+..|..+...|++++|+..|+++++..+. . ..++..+|.++...|++++|+..+++++.... .
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~ 101 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE-----T----VELHLALGNLFRRRGEVDRAIRIHQNLLSRPD----L 101 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcc-----c----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC----C
Confidence 345667788999999999999999999998642 1 24588999999999999999999998876310 1
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA 280 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 280 (476)
.......++..+|.+|...|++++|+.+|+++++.. +....++..++.++...|++++|++.+++++.....
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG--------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 122344678999999999999999999999998652 123456888999999999999999999987653211
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
.........+..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++...
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 111234556778999999999999999999999987 55667789999999999999999999999999763
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
. .....++..++.+|...|++++|+..++++++..++. ..+..++.++...|++++|+..++++
T Consensus 245 p--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--------~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 245 P--------EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--------DLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred h--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 2235677889999999999999999999998875432 23478999999999999999999999
Q ss_pred HHHH
Q 011858 441 IAKL 444 (476)
Q Consensus 441 ~~~~ 444 (476)
++..
T Consensus 309 l~~~ 312 (389)
T PRK11788 309 LRRH 312 (389)
T ss_pred HHhC
Confidence 8763
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2e-21 Score=178.04 Aligned_cols=343 Identities=17% Similarity=0.172 Sum_probs=275.1
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
-..++..+.++..++..++..| +|..+..++..++.... ..+..++.++++|.+|..+|+|++|..+|.++
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~--------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTE--------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3456677778899999999998 59999999888887541 24567888999999999999999999999999
Q ss_pred hhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc----cHH
Q 011858 148 ISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM----QFD 223 (476)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~ 223 (476)
+...+.. .. -.++.+|.++...|+++.|+.+|++++.. .|....+...+|.+|...+ ..+
T Consensus 334 ~k~~~d~----~~----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 334 LKADNDN----FV----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred HccCCCC----cc----ccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 8876532 11 23789999999999999999999999887 5667788888999888776 566
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCR 303 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (476)
.|..+..++++..+ ....+|..++.++....-+.. +.+|..|+.++...+.. .-...++++|..++..|+
T Consensus 398 ~a~~~l~K~~~~~~--------~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 398 KASNVLGKVLEQTP--------VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred HHHHHHHHHHhccc--------ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcC
Confidence 77777777766552 345568889988876655554 99999999888877665 557789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q 011858 304 FDEAVFSYQKALTVFKSSKGDNH--PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA 381 (476)
Q Consensus 304 ~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 381 (476)
+.+|..+|.+|+..+......+. .......+++|.++...++++.|.+.|...+.. +|..+.++..+|.
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDAYLRLGC 538 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHHHHHhhH
Confidence 99999999999998654322222 123556899999999999999999999999886 4557899999998
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcc
Q 011858 382 IYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEP 461 (476)
Q Consensus 382 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 461 (476)
.....++..+|...+..++.....++ .++..+|.+|....++..|.+-|+..++-.....+. .++..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np-------~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~------Yslia 605 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNP-------NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA------YSLIA 605 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch------hHHHH
Confidence 88889999999999999999988887 888899999999999999999888887644333221 34556
Q ss_pred cccccc
Q 011858 462 DGIGLC 467 (476)
Q Consensus 462 l~~~~~ 467 (476)
||++|.
T Consensus 606 LGN~~~ 611 (1018)
T KOG2002|consen 606 LGNVYI 611 (1018)
T ss_pred hhHHHH
Confidence 676654
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-21 Score=179.82 Aligned_cols=349 Identities=18% Similarity=0.203 Sum_probs=271.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011858 67 ASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEK 146 (476)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (476)
++..+|+.+..++..|...+..+ +|-.|+.+|.+++.+.+.. .+.....+|.|++.+|+.+.|+..|++
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~----------~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKK-DYRGALKYYKKALRINPAC----------KADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCccc----------CCCccchhhhHHHhccchhhHHHHHHH
Confidence 45678888899999999999998 5999999999998875433 223455688999999999999999999
Q ss_pred hhhhccccCCCchhHHHHHhHhhHHHHHHHcCC---hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHH
Q 011858 147 AISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ---VDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFD 223 (476)
Q Consensus 147 al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 223 (476)
++++.+. .+.++..||.+-....+ +..++..+.++... ++....++..|+..++..|+|.
T Consensus 225 alqLdp~---------~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 225 ALQLDPT---------CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HHhcChh---------hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcccHH
Confidence 9999762 13556777766655443 44444455444443 4556678999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCR 303 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 303 (476)
.+..+...++..... ....+..++.+|..|..+|+|++|..+|.+++... +......++.+|++|...|+
T Consensus 288 ~v~~la~~ai~~t~~-----~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTEN-----KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhHHHHHhch
Confidence 999999999876522 23567789999999999999999999999886532 22235667899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 304 FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG----KLRESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 304 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
++.|..+|++.++. .|+...+...||.+|...+ ..++|..++.++++... ....+|..+
T Consensus 358 le~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~---------~d~~a~l~l 420 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP---------VDSEAWLEL 420 (1018)
T ss_pred HHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc---------ccHHHHHHH
Confidence 99999999999988 7888899999999998876 56778888888887643 347889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCc--hhhhh
Q 011858 380 SAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKS--AFFRS 457 (476)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~ 457 (476)
+.++.... ...++.+|..|+.+....... .-..+++++|..++..|++.+|...|.+|+..+....+.+. .....
T Consensus 421 aql~e~~d-~~~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 421 AQLLEQTD-PWASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 99877554 455599999999888877333 44588999999999999999999999999998654332221 11123
Q ss_pred hhcccccccccccccc
Q 011858 458 CVEPDGIGLCPVVQDR 473 (476)
Q Consensus 458 ~~~~l~~~~~~~g~~~ 473 (476)
..++|++++..+++..
T Consensus 498 ~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 5688888888887654
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.9e-23 Score=182.90 Aligned_cols=280 Identities=18% Similarity=0.197 Sum_probs=230.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011858 67 ASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEK 146 (476)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (476)
+...+++..-++.++|..|+..++ |++|...|+.+-+. .|....-.-....+++.+.+--+---+.+.
T Consensus 345 lp~h~~nt~wvl~q~GrayFEl~~-Y~~a~~~F~~~r~~-----------~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 345 LPSHHYNTGWVLSQLGRAYFELIE-YDQAERIFSLVRRI-----------EPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred hHHhcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh-----------ccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 445677778888899999999984 88888888877664 333333344445555555443322223333
Q ss_pred hhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHH
Q 011858 147 AISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAE 226 (476)
Q Consensus 147 al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 226 (476)
.++.. +..| +.|..+|.+|..+++++.|+.+|++|+++ +|..+.+|..+|.-+....++|.|.
T Consensus 413 Li~~~-----~~sP----esWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 413 LIDTD-----PNSP----ESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHhhC-----CCCc----HHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHH
Confidence 33333 2333 45999999999999999999999999998 7888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHH
Q 011858 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDE 306 (476)
Q Consensus 227 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 306 (476)
.+|++|+.+.+++. .+|+.+|.+|.++++++.|.-+|++|++ ..|....+...+|.++.+.|+.++
T Consensus 476 ~~fr~Al~~~~rhY--------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~------INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 476 KSFRKALGVDPRHY--------NAWYGLGTVYLKQEKLEFAEFHFQKAVE------INPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred HHHHhhhcCCchhh--------HHHHhhhhheeccchhhHHHHHHHhhhc------CCccchhHHhhhhHHHHHhhhhhH
Confidence 99999998876644 4499999999999999999999999976 456677788899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc
Q 011858 307 AVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV 386 (476)
Q Consensus 307 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (476)
|+.++++|+.+ ++......+..|.++...+++++|+..+++..++.++ ...++..+|.+|.+.
T Consensus 542 AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~---------es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 542 ALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ---------ESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc---------hHHHHHHHHHHHHHH
Confidence 99999999998 7888889999999999999999999999999988654 478899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 011858 387 DEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 387 g~~~~A~~~~~~a~~~~~~~ 406 (476)
|+.+.|+..|.-|.++.++-
T Consensus 605 ~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 605 GNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred ccchHHHHhhHHHhcCCCcc
Confidence 99999999999998887664
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=5.6e-21 Score=186.35 Aligned_cols=347 Identities=9% Similarity=-0.015 Sum_probs=252.6
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
.+|..+..+..+|..+...| ++++|+..+++++++ .|....++..++.++...|++++|+..+++++.
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSL-----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35667778999999999999 599999999999985 455566788999999999999999999999998
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELC 229 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (476)
..+... . +..+|.++...|++++|+..++++++. .|....++..++.++...|..++|+..+
T Consensus 112 ~~P~~~---------~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 112 GAPDKA---------N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred hCCCCH---------H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 865321 4 678899999999999999999999997 5556666777788877777777666555
Q ss_pred HH----------------------------------------------HHHHHHhcCCCCchHHHHHHHH-HHHHHHHhC
Q 011858 230 KK----------------------------------------------TLEIHRAHSEPASLEESADRRL-MALICEAKG 262 (476)
Q Consensus 230 ~~----------------------------------------------al~~~~~~~~~~~~~~~~~~~~-la~~~~~~g 262 (476)
++ +++..+..... .+....+... ++ .+...|
T Consensus 174 ~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~-~~~~~~a~~d~l~-~Ll~~g 251 (765)
T PRK10049 174 DDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA-TADYQRARIDRLG-ALLARD 251 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHH-HHHHhh
Confidence 42 22221111111 1122222222 33 346779
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHHHH
Q 011858 263 DYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH-PSVASVFVRLADLYH 341 (476)
Q Consensus 263 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~ 341 (476)
++++|+..|++++.. ....+..+. ..+|.+|...|++++|+.+|+++++.- +.. .........++.++.
T Consensus 252 ~~~eA~~~~~~ll~~---~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~-----p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 252 RYKDVISEYQRLKAE---GQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHP-----ETIADLSDEELADLFYSLL 321 (765)
T ss_pred hHHHHHHHHHHhhcc---CCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcC-----CCCCCCChHHHHHHHHHHH
Confidence 999999999986542 222233333 336889999999999999999988641 111 112356677888889
Q ss_pred HcCChhHHHHHHHHHHHHHcCCC------CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHH
Q 011858 342 RTGKLRESKSYCENALRIYARPV------PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAG 415 (476)
Q Consensus 342 ~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 415 (476)
..|++++|+.+++++....+... ..........++..++.++...|++++|+..+++++...+.+. .
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~-------~ 394 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ-------G 394 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H
Confidence 99999999999999987643100 0011113356778899999999999999999999998877764 7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccccc
Q 011858 416 IEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDR 473 (476)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 473 (476)
++..+|.++...|++++|++.+++++.+.+.. . ..+..++.++..+|+++
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~---~-----~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRN---I-----NLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---h-----HHHHHHHHHHHHhCCHH
Confidence 88999999999999999999999999754221 1 23445555555555544
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-20 Score=158.07 Aligned_cols=345 Identities=17% Similarity=0.106 Sum_probs=250.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH-------Hhh----------hccC-CChhHHHHHHHHHHHHHhcC
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFER-------CAA----------AEAE-PSLDYAMSLHVLAAIYCSLG 135 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~-------~~~----------~~~~-~~~~~~~~~~~l~~~~~~~g 135 (476)
..-.++..|.++...| +...|+..+..++....- ... ...+ ........-+.++.++....
T Consensus 163 D~fllYL~Gvv~k~~~-~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELG-LLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred hhHHHHHHHHHHHhhc-hHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 3566788899999998 689999998888763110 000 0000 11123333344556666666
Q ss_pred ChhHHHHHHHHhhhh-ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011858 136 KFEEAVPALEKAISV-PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAE 214 (476)
Q Consensus 136 ~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 214 (476)
+.++++.-++..... ++ ... .+-...|.+...+.++++|+..|+..... +|....-+-...+
T Consensus 242 q~~e~~~k~e~l~~~gf~-----~~~----~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN 304 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFP-----NSM----YIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSN 304 (559)
T ss_pred HHHHHHHHHHHHHhccCC-----ccH----HHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhH
Confidence 677777666665554 22 111 22456777888888888888888887653 4444444444455
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 215 AHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
+++-..+-.+---+.+.+..+.+-.. .+...+|+.|...++.++|+.+|++|++ -++....+|..+
T Consensus 305 ~LYv~~~~skLs~LA~~v~~idKyR~--------ETCCiIaNYYSlr~eHEKAv~YFkRALk------LNp~~~~aWTLm 370 (559)
T KOG1155|consen 305 VLYVKNDKSKLSYLAQNVSNIDKYRP--------ETCCIIANYYSLRSEHEKAVMYFKRALK------LNPKYLSAWTLM 370 (559)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCCc--------cceeeehhHHHHHHhHHHHHHHHHHHHh------cCcchhHHHHHh
Confidence 55544443333333333333332222 2256689999999999999999999977 456678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
|.-|..+++...|+..|++|+++ .|....+|+.||+.|.-++-..=|+-+|++|....+. ...
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---------DsR 433 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN---------DSR 433 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC---------chH
Confidence 99999999999999999999999 8888999999999999999999999999999997543 267
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
.|..||.+|.+.++.++|+++|.+++....... .++..||.+|.+.++.++|..+|++.++.....+... ..
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-------~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~-~~ 505 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-------SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID-DE 505 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccch-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-hH
Confidence 899999999999999999999999998765542 7889999999999999999999999999876555543 32
Q ss_pred hhhhhcccccccccccccccC
Q 011858 455 FRSCVEPDGIGLCPVVQDRRG 475 (476)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~~ 475 (476)
...+...|+.-+..++|++++
T Consensus 506 t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHH
Confidence 334444588888888877653
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-20 Score=158.32 Aligned_cols=277 Identities=16% Similarity=0.146 Sum_probs=222.6
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
.....-...|.+.+...++++|+..|+...+..+-..++ .-...++++...+-.+---..+.+..+
T Consensus 260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~d---------mdlySN~LYv~~~~skLs~LA~~v~~i----- 325 (559)
T KOG1155|consen 260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDD---------MDLYSNVLYVKNDKSKLSYLAQNVSNI----- 325 (559)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchh---------HHHHhHHHHHHhhhHHHHHHHHHHHHh-----
Confidence 334455678889999999999999999998875532211 233344444444333222223333333
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
+....++...+|+.|...++.++|+.+|++++++.+. ...+|..+|.-|..+.+...|++.|+.|++
T Consensus 326 ---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~--------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 326 ---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK--------YLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred ---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc--------hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 4455677889999999999999999999999998765 344588999999999999999999999977
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
..|....+|+.+|+.|..++...=|+-+|++|+.. .|.....|..||.+|.+.++.++|+.+|.+++.
T Consensus 393 ----i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 393 ----INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred ----cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 45677889999999999999999999999999998 788899999999999999999999999999998
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
.... ...++..+|.+|.++++.++|..+|++.++..............+...|+..+.+.+++++|-.+..
T Consensus 461 ~~dt---------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 461 LGDT---------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred cccc---------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7432 2678999999999999999999999999997744422334455666779999999999999999888
Q ss_pred HHHHH
Q 011858 439 SAIAK 443 (476)
Q Consensus 439 ~a~~~ 443 (476)
+++.-
T Consensus 532 ~~~~~ 536 (559)
T KOG1155|consen 532 LVLKG 536 (559)
T ss_pred HHhcC
Confidence 77754
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.9e-20 Score=180.48 Aligned_cols=334 Identities=12% Similarity=0.019 Sum_probs=246.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHH
Q 011858 65 TDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPAL 144 (476)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (476)
.......|.....+..++..+...|+ +++|+..++++++. .|+... +..+|.++...|++++|+..+
T Consensus 73 ~~al~~~P~~~~a~~~la~~l~~~g~-~~eA~~~l~~~l~~-----------~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 73 QKALSLEPQNDDYQRGLILTLADAGQ-YDEALVKAKQLVSG-----------APDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh-----------CCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 33345678888889999999999994 99999999999885 455566 889999999999999999999
Q ss_pred HHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHH-----------------------------------
Q 011858 145 EKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEE----------------------------------- 189 (476)
Q Consensus 145 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------------------------- 189 (476)
+++++..+.. . .++..++.++...|..++|+..+++
T Consensus 140 ~~al~~~P~~-----~----~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 140 TQALPRAPQT-----Q----QYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHHhCCCC-----H----HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 9999987632 2 3456678888777777777655552
Q ss_pred ----HHHHHHHHhc---CC---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 011858 190 ----GLKIQIEALG---ET---DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICE 259 (476)
Q Consensus 190 ----al~~~~~~~~---~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 259 (476)
+++.++.... .+ .+....+.......+...|++++|+..|+++++..+. .+ ..+ ...+|.+|.
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~--~P---~~a--~~~la~~yl 283 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI--IP---PWA--QRWVASAYL 283 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--CC---HHH--HHHHHHHHH
Confidence 2222112110 01 1122223333223446779999999999998765211 11 222 233588999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---CC--CCCc--hHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANGQD-NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS---KG--DNHP--SVAS 331 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~--~~~~--~~~~ 331 (476)
..|++++|+.+|++++.. .+.. .........++.++...|++++|+.+++++....... .+ ...| ....
T Consensus 284 ~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 284 KLHQPEKAQSILTELFYH---PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred hcCCcHHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 999999999999987642 1111 1113455677778899999999999999988762100 00 0011 2356
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
++..++.++...|++++|+..+++++...+. ...++..+|.++...|++++|++.+++++.+.|+..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~---------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~---- 427 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPG---------NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI---- 427 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh----
Confidence 7788999999999999999999999988543 257899999999999999999999999999988775
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
.++..+|.++...|++++|...++++++..++
T Consensus 428 ---~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 428 ---NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 78889999999999999999999999875433
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1e-20 Score=184.60 Aligned_cols=265 Identities=12% Similarity=0.021 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
...+++.+|.++.. +++.+|+..+.+++...+. . .....+|.++...|++++|+..|++++..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-----~-----~~~L~lA~al~~~Gr~eeAi~~~rka~~~------ 538 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-----A-----WQHRAVAYQAYQVEDYATALAAWQKISLH------ 538 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-----h-----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------
Confidence 77899999999987 8999999999999988752 1 12566788888999999999999997543
Q ss_pred CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
.+. ...+..+|.++...|++++|+.+++++++..+. ....+..++......|++++|+..+++++..
T Consensus 539 --~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~--------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-- 605 (987)
T PRK09782 539 --DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG--------DNALYWWLHAQRYIPGQPELALNDLTRSLNI-- 605 (987)
T ss_pred --CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 122 234678899999999999999999999876422 1222344555556679999999999999763
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
.+. ...+.++|.++...|++++|+..|++++.+ .|....++.++|.++...|++++|+..|++++++
T Consensus 606 ----~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 606 ----APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred ----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 233 668899999999999999999999999999 7888999999999999999999999999999998
Q ss_pred HcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 360 YARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
.+. ...++.++|.++..+|++++|+.+|++++++.++.. .+....|.+.....+++.|.+.+.+
T Consensus 673 ~P~---------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a-------~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 673 LPD---------DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA-------LITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred CCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc-------hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 543 367899999999999999999999999999887764 7777889999999999999998888
Q ss_pred HHHH
Q 011858 440 AIAK 443 (476)
Q Consensus 440 a~~~ 443 (476)
+..+
T Consensus 737 ~~~~ 740 (987)
T PRK09782 737 RWTF 740 (987)
T ss_pred Hhhc
Confidence 8764
No 27
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=9.8e-21 Score=152.71 Aligned_cols=286 Identities=14% Similarity=0.053 Sum_probs=230.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhH-HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHAL-AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
+|....+++. .+++...+...|-......+++........+.. ...+-...+|.||...|-+.+|...++.+++.
T Consensus 177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-- 252 (478)
T KOG1129|consen 177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-- 252 (478)
T ss_pred ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--
Confidence 4556656554 356667778888777776666543222222211 11233578999999999999999999999975
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
....+++..|+.+|.+..+...|+..+.+.++.++. ....+..++.++..++++++|.++|+.++
T Consensus 253 -------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~--------~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 253 -------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF--------DVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred -------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc--------hhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 245678899999999999999999999999887643 34447889999999999999999999886
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 276 MAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
+ .++....+...+|.-|+..++.+-|+.+|++.+++ .......+.++|.+++..++++-++..|++
T Consensus 318 k------~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--------G~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 318 K------LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM--------GAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred h------cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh--------cCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 6 34444556667788899999999999999999998 556678999999999999999999999999
Q ss_pred HHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHH
Q 011858 356 ALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
++....+ +...+++|+++|.+....|++.-|..+|+-++....+. ..++.+||.+-.+.|+.++|..
T Consensus 384 Alstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-------~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 384 ALSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-------GEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred HHhhccC------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-------HHHHHhHHHHHhhcCchHHHHH
Confidence 9998654 34568999999999999999999999999988765555 4899999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 011858 436 SFESAIAKLRASG 448 (476)
Q Consensus 436 ~~~~a~~~~~~~~ 448 (476)
++..|-...+...
T Consensus 451 ll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 451 LLNAAKSVMPDMA 463 (478)
T ss_pred HHHHhhhhCcccc
Confidence 9999987654443
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-20 Score=160.01 Aligned_cols=279 Identities=16% Similarity=0.158 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
+..+-..|+-++..|+|++|+.+|.+|+++++.. + ..|.+++.+|...|+|++-++...+++++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-----p----iFYsNraAcY~~lgd~~~Vied~TkALEl------- 178 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-----P----IFYSNRAACYESLGDWEKVIEDCTKALEL------- 178 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-----c----hhhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 4457788999999999999999999999998632 2 23899999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHH------------------HHHHH---------HHhcCCCCch--------
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCK------------------KTLEI---------HRAHSEPASL-------- 245 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~---------~~~~~~~~~~-------- 245 (476)
+|....+++..+..+..+|++++|+.-.. +.++. ......+..+
T Consensus 179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 78889999999999999999888865432 11111 0000000000
Q ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHH
Q 011858 246 ------------------------------------------------------------------EESADRRLMALICE 259 (476)
Q Consensus 246 ------------------------------------------------------------------~~~~~~~~la~~~~ 259 (476)
..+.++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00233344444455
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADL 339 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 339 (476)
..|++-.|.+.++.++.+ ++.....|..+|.+|...++.++-...|.+|.++ +|..+.+|+..|++
T Consensus 338 L~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQM 403 (606)
T ss_pred hcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHH
Confidence 555555555555555442 2222333667777777777777777777777777 77888899999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 011858 340 YHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEAR 419 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (476)
++-++++++|+.-|++++.+.++ .+..+..++.+..+++++++++..|+.+...+|+.+ +++..
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe---------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~-------Evy~~ 467 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPE---------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP-------EVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-------hHHHH
Confidence 99999999999999999998543 477889999999999999999999999999999887 89999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 420 MGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
.|.++..+++|++|.+.|..|+.+-+.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999999987655
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1e-20 Score=184.58 Aligned_cols=292 Identities=13% Similarity=0.021 Sum_probs=238.7
Q ss_pred CCCCCCC--chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHH
Q 011858 67 ASLDNPD--LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPAL 144 (476)
Q Consensus 67 ~~~~~~~--~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (476)
.....|. ....++.+|.++.. | .+++|+..+.+++... |... ....+|.++...|++++|+..|
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~-~~~eAi~a~~~Al~~~-----------Pd~~-~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-T-LPGVALYAWLQAEQRQ-----------PDAW-QHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-C-CcHHHHHHHHHHHHhC-----------CchH-HHHHHHHHHHHCCCHHHHHHHH
Confidence 3455677 88899999999987 6 4899999999998752 3222 3666788888999999999999
Q ss_pred HHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHH
Q 011858 145 EKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDK 224 (476)
Q Consensus 145 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 224 (476)
++++...+. . ..+..+|.++...|++++|+.+|+++++. .|.....+..++......|++++
T Consensus 533 rka~~~~p~-----~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 533 QKISLHDMS-----N-----EDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHhccCCC-----c-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHH
Confidence 997655321 1 22678899999999999999999999976 34444555566777777799999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRF 304 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 304 (476)
|+..+++++++.+. ...+.++|.++...|++++|+..+++++. ..|....++.++|.++...|++
T Consensus 595 Al~~~~~AL~l~P~---------~~a~~~LA~~l~~lG~~deA~~~l~~AL~------l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 595 ALNDLTRSLNIAPS---------ANAYVARATIYRQRHNVPAAVSDLRAALE------LEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHHHHHhCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999987642 23588999999999999999999999877 3455667899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Q 011858 305 DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYE 384 (476)
Q Consensus 305 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 384 (476)
++|+..|++++++ .|....++.++|.++...|++++|+.+|++++++.+. .+.+....|.+..
T Consensus 660 eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~---------~a~i~~~~g~~~~ 722 (987)
T PRK09782 660 AQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN---------QALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------CchhhhhhhHHHH
Confidence 9999999999998 7888999999999999999999999999999998544 3677788899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcH
Q 011858 385 SVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRY 430 (476)
Q Consensus 385 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (476)
...+++.|.+.+.++..+.+... +....|.++...+++
T Consensus 723 ~~~~~~~a~~~~~r~~~~~~~~~--------a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWTFSFDSS--------IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHHHHHHHHhhcCccch--------hccccchHhhhcccc
Confidence 99999999999998887765542 444566666666665
No 30
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-19 Score=157.16 Aligned_cols=280 Identities=16% Similarity=0.163 Sum_probs=232.1
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHH-HHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMS-LHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
+....+...+..++..++ +.+..+..+..++. +|-...+ -..+| ++...|+..+=..+-.+.++..
T Consensus 242 ~~~dll~~~ad~~y~~c~-f~~c~kit~~lle~-----------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~y 308 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCR-FKECLKITEELLEK-----------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLY 308 (611)
T ss_pred hcHHHHHHHHHHHHHcCh-HHHHHHHhHHHHhh-----------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhC
Confidence 445677888888888885 77777777776664 2222223 34555 8888888766665555666655
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
|... -.|+..|..|...|++.+|..+|.++..+ ++..+.+|...|..+...|+.++|+..|..
T Consensus 309 P~~a---------~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 309 PSKA---------LSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred CCCC---------cchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 4322 23899999999999999999999999987 788899999999999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSY 311 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 311 (476)
|-++.+....+ ...+|.-|...++++-|.++|.+|+.++ |....++..+|.+.+..+.|.+|..+|
T Consensus 372 Aarl~~G~hlP--------~LYlgmey~~t~n~kLAe~Ff~~A~ai~------P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 372 AARLMPGCHLP--------SLYLGMEYMRTNNLKLAEKFFKQALAIA------PSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred HHHhccCCcch--------HHHHHHHHHHhccHHHHHHHHHHHHhcC------CCcchhhhhhhheeehHhhhHHHHHHH
Confidence 99998877666 6778999999999999999999997754 555677899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHH
Q 011858 312 QKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEE 391 (476)
Q Consensus 312 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 391 (476)
+.++...+....+ .+.....+.+||.++.+++.+++|+.++++++.+.++. ..++..+|.+|..+|+++.
T Consensus 438 ~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 438 QKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------ASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------hhHHHHHHHHHHHhcChHH
Confidence 9999777666432 33567789999999999999999999999999987653 7889999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 011858 392 ALKLLQRAMKLLEDK 406 (476)
Q Consensus 392 A~~~~~~a~~~~~~~ 406 (476)
|+++|.+++.+.+.+
T Consensus 508 Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 508 AIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHhcCCcc
Confidence 999999999987766
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=7.7e-21 Score=160.22 Aligned_cols=211 Identities=19% Similarity=0.224 Sum_probs=116.9
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011858 214 EAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVS 293 (476)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (476)
.+-+..|++++|.+.|++++.-. .....+++++|..+..+|++++|+++|-+.-.++. ..+.++..
T Consensus 498 n~~f~ngd~dka~~~ykeal~nd--------asc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~q 563 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNND--------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQ 563 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCc--------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHH
Confidence 33333445555555555544321 12233455555555555555555555554433321 22445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHH
Q 011858 294 IGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIA 373 (476)
Q Consensus 294 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 373 (476)
++.+|..+.+..+|++++.++..+ .|....++..||.+|-+.|+-.+|.+++-...+.++. ..
T Consensus 564 ianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~---------ni 626 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC---------NI 626 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc---------ch
Confidence 555555555555555555555544 4444555555666666666666665555555444332 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCch
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSA 453 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 453 (476)
.+...+|..|....-+++|+.+|+++.-+.+.. ......++.|+.+.|+|++|.+.|+..-. +....
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaaliqp~~-------~kwqlmiasc~rrsgnyqka~d~yk~~hr---kfped--- 693 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-------SKWQLMIASCFRRSGNYQKAFDLYKDIHR---KFPED--- 693 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-------HHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCccc---
Confidence 455566666666666777777777766554443 25555678888888888888888776553 22221
Q ss_pred hhhhhhccccccccccc
Q 011858 454 FFRSCVEPDGIGLCPVV 470 (476)
Q Consensus 454 ~~~~~~~~l~~~~~~~g 470 (476)
..|+..|.++...+|
T Consensus 694 --ldclkflvri~~dlg 708 (840)
T KOG2003|consen 694 --LDCLKFLVRIAGDLG 708 (840)
T ss_pred --hHHHHHHHHHhcccc
Confidence 256666666665555
No 32
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.86 E-value=4e-18 Score=139.68 Aligned_cols=348 Identities=16% Similarity=0.170 Sum_probs=282.4
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 155 (476)
......|..++... ++++|+..+.+.+...... ......+-.+..+...+|.|++++.+--..+..+..
T Consensus 7 k~q~~~g~~Ly~s~-~~~~al~~w~~~L~~l~~~--------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~-- 75 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSN-QTEKALQVWTKVLEKLSDL--------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE-- 75 (518)
T ss_pred HHHHHHHHhHhcCc-hHHHHHHHHHHHHHHHHHH--------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH--
Confidence 34566777777776 5999999999888876554 345567778888999999999998887777666543
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD-PRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
.++......++.+++..+....++.+++.+-...+.+-.. .. ..-......++..+..++.|+++++.|+++++
T Consensus 76 -~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt----~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 76 -LEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGT----RAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCC----CcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2333344577999999999999999999988877765211 11 12235677799999999999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC----hhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD----NEVAAIDVSIGNIYLSLCRFDEAVFS 310 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 310 (476)
+....+++ .....++..+|.++....++++|+-+..+|.++....+.. .....+++.++..+..+|+.-.|.++
T Consensus 151 ~A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~ 228 (518)
T KOG1941|consen 151 YAHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMEC 228 (518)
T ss_pred HhhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 99888876 3456678899999999999999999999999998877632 24466788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHH
Q 011858 311 YQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPE 390 (476)
Q Consensus 311 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 390 (476)
.+++.++.-.. ++.+..+.....+|.+|...|+.+.|..-|+++..+....+ +......++...+.++....-..
T Consensus 229 C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g---drmgqv~al~g~Akc~~~~r~~~ 303 (518)
T KOG1941|consen 229 CEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG---DRMGQVEALDGAAKCLETLRLQN 303 (518)
T ss_pred HHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998877 67788899999999999999999999999999999988753 45556778888888877655555
Q ss_pred H-----HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 391 E-----ALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 391 ~-----A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
+ |+++-++.+++.... |....+..+...++.+|..+|.-++-...+.++-+...+.
T Consensus 304 k~~~Crale~n~r~levA~~I-G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 304 KICNCRALEFNTRLLEVASSI-GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred cccccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 5 999999999999988 8888888999999999999998888777777766654443
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-19 Score=157.53 Aligned_cols=279 Identities=15% Similarity=0.160 Sum_probs=229.8
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
+...++...+..++..++|.+..+.++..++..+-.. + ..-..+| ++...|+..+= |.-+.++...
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~----~----~~~~~ia-~l~el~~~n~L---f~lsh~LV~~-- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL----P----CLPLHIA-CLYELGKSNKL---FLLSHKLVDL-- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc----c----hHHHHHH-HHHHhcccchH---HHHHHHHHHh--
Confidence 3445677788889999999999999999998876321 1 1235566 77777776554 4444444332
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
.|..+..|+.+|..|...|++.+|.++|.++..+.+..+ .+|...|..+...|+.++|+..|..|-+++
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg--------paWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG--------PAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc--------HHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999988765543 348889999999999999999999997766
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
..... -...+|.-|...++++-|..+|.+|+.+ .|....++..+|.+.+..+.|.+|..+|+.++.
T Consensus 377 ~G~hl------P~LYlgmey~~t~n~kLAe~Ff~~A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 377 PGCHL------PSLYLGMEYMRTNNLKLAEKFFKQALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred cCCcc------hHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 43322 2355888999999999999999999999 788889999999999999999999999999997
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
..+... .........+.+||.++.+++.+++|+.+|++++.+.+++. .++..+|.+|..+|+++.|+++|.
T Consensus 443 ~ik~~~--~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~-------~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 443 VIKSVL--NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA-------STHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred Hhhhcc--ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch-------hHHHHHHHHHHHhcChHHHHHHHH
Confidence 777653 22224566799999999999999999999999999998885 888999999999999999999999
Q ss_pred HHHHHHH
Q 011858 439 SAIAKLR 445 (476)
Q Consensus 439 ~a~~~~~ 445 (476)
+++.+.+
T Consensus 514 KaL~l~p 520 (611)
T KOG1173|consen 514 KALALKP 520 (611)
T ss_pred HHHhcCC
Confidence 9997543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.3e-18 Score=158.72 Aligned_cols=341 Identities=14% Similarity=0.083 Sum_probs=245.3
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcccc
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVT 154 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 154 (476)
...++..|...+..| ++++|...+.++++. +|....+|+.||.+|..+|+.+++...+-.|-.+.++.
T Consensus 139 l~~ll~eAN~lfarg-~~eeA~~i~~EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARG-DLEEAEEILMEVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD 206 (895)
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 678899999999999 599999999999985 57778899999999999999999999999988887533
Q ss_pred CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 155 RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
. ..|..++.....+|++.+|.-+|.+|++. .|......+..+.+|.++|++..|+..|.+++.
T Consensus 207 ~---------e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 207 Y---------ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred h---------HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 2 34899999999999999999999999998 666788899999999999999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
..+.... ...-......+..+...++-+.|++.++.++... ........++.++.++.....++.|......-
T Consensus 270 ~~p~~d~---er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~----~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 270 LDPPVDI---ERIEDLIRRVAHYFITHNERERAAKALEGALSKE----KDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred hCCchhH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc----cccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 8762111 1122223445777888888899999999887621 22222334567888999999999998877665
Q ss_pred HH----------------------HHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHH
Q 011858 315 LT----------------------VFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEI 372 (476)
Q Consensus 315 l~----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 372 (476)
.. ++.-. .+-......+...++.+..+.++..+++..+..--. ....+.
T Consensus 343 ~~r~~e~d~~e~~~~~~~~~~~~~~~~~~-~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n--------~~~~d~ 413 (895)
T KOG2076|consen 343 RNRESEKDDSEWDTDERRREEPNALCEVG-KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN--------VWVSDD 413 (895)
T ss_pred hccccCCChhhhhhhhhccccccccccCC-CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc--------CChhhh
Confidence 54 10000 000112222355555555555555555544432211 123455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCc
Q 011858 373 AGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKS 452 (476)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 452 (476)
...+..++..+...|++.+|+.+|......... ..+.+|..+|.||..+|.+++|+++|++++.+.+..-
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~---- 483 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNREGY------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL---- 483 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----
Confidence 777888888888888888888888776543222 1256778888888888888888888888886543222
Q ss_pred hhhhhhhccccccccccccccc
Q 011858 453 AFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 453 ~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
.+...|+.++..+|++++
T Consensus 484 ----D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 484 ----DARITLASLYQQLGNHEK 501 (895)
T ss_pred ----hhhhhHHHHHHhcCCHHH
Confidence 234556666666666553
No 35
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.86 E-value=1.1e-18 Score=143.05 Aligned_cols=333 Identities=16% Similarity=0.094 Sum_probs=274.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
-...-|.-++...++++|+..+.+.+...... ...+..+-.+..+...+|.|++++.+--..++.+.+. ++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~------~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds 79 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL------MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDS 79 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH------HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 34556677778888999999999888765322 2334567888899999999999998877777776664 445
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
....+++.+++..+....++.+++.+....+.+-...... .-......++..+..++.+++++++|+.|+.+....+
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~---~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ---LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc---ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 5677899999999999999999999988877654333221 1123466789999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN--HPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
+......++..+|.++....++++|..+..+|.++.....-++ ......+++.++..+..+|+.-.|.++.+++.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9888889999999999999999999999999999987764222 22346678899999999999999999999999998
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHH-----HHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEE-----ARS 435 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~ 435 (476)
-..+ +....+..+..+|.+|...|+.+.|..-|++|....... ++......++...+.++....-..+ |++
T Consensus 237 l~~G---dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQHG---DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHhC---ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 8753 667778899999999999999999999999999999887 8888788888889998887766666 999
Q ss_pred HHHHHHHHHHHhcccCchhhhhhhccccccccccccc
Q 011858 436 SFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQD 472 (476)
Q Consensus 436 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 472 (476)
.-++++++..++|.+.... .+...++.+|..+|+-
T Consensus 313 ~n~r~levA~~IG~K~~vl--K~hcrla~iYrs~gl~ 347 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVL--KLHCRLASIYRSKGLQ 347 (518)
T ss_pred HHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhccch
Confidence 9999999999999875544 6778888888777653
No 36
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.85 E-value=3e-17 Score=166.10 Aligned_cols=354 Identities=13% Similarity=0.026 Sum_probs=263.6
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCC
Q 011858 78 LLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGA 157 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 157 (476)
....+..+...| ++++|...+.++......... .+.......+...+|.++...|++++|..++++++...+.
T Consensus 412 ~~~~a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---- 484 (903)
T PRK04841 412 VLLQAWLAQSQH-RYSEVNTLLARAEQELKDRNI--ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---- 484 (903)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhccccCc--ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----
Confidence 345566667787 489999888888766433210 0011224556667899999999999999999999886432
Q ss_pred chhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 011858 158 DHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHR 237 (476)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 237 (476)
........+...+|.++...|++++|...+++++...... ........++..+|.++...|++++|..++++++.+..
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1122223457889999999999999999999999987764 22334456788999999999999999999999999988
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 238 AHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 238 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
.............+..+|.++...|++++|...+.+++......+ ......++..+|.++...|++++|...+.++..+
T Consensus 563 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 563 EQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 765433333445567789999999999999999999988876544 3345667788999999999999999999999887
Q ss_pred HHhcCCCCCchH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 318 FKSSKGDNHPSV-ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLL 396 (476)
Q Consensus 318 ~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (476)
.... ...... ..........+...|+.+.|..++........ + ........+..++.++...|++++|...+
T Consensus 642 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~----~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 714 (903)
T PRK04841 642 LGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF----A-NNHFLQGQWRNIARAQILLGQFDEAEIIL 714 (903)
T ss_pred Hhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC----c-cchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6543 111111 11111123445568899999888766543211 1 11122334567899999999999999999
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 397 QRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
++++...... +.....+.++..+|.++...|+.++|...+.+++++....+-
T Consensus 715 ~~al~~~~~~-g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 715 EELNENARSL-RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHh-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999987776 666677788899999999999999999999999998877654
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=1.1e-20 Score=163.11 Aligned_cols=268 Identities=25% Similarity=0.249 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
..+|.+++..|++++|++.+.+.+..... ..+. ..+..+|.+....++++.|+..|++++.. ++.
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~---~~~~----~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~ 76 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAP---PDDP----EYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---cccc----ccccccccccccccccccccccccccccc--------ccc
Confidence 36699999999999999999776554310 1111 44788999999999999999999999876 333
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
....+..++.+ ...+++++|+.+++++.+.... + ..+..+..++...++++++...++++.. ....
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~---~------~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~ 142 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD---P------RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAA 142 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T--
T ss_pred ccccccccccc-cccccccccccccccccccccc---c------chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCC
Confidence 44556667777 6899999999999988765422 1 1245567788999999999999998653 2223
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
+....++..+|.++...|+.++|+..++++++. .|....+...++.++...|+++++.+.++......+..
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~- 213 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD- 213 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-
Confidence 455778899999999999999999999999999 78888899999999999999999988888887765331
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
...+..+|.++...|++++|+.+|++++...+.++ .++..+|.++...|+.++|..++++++...
T Consensus 214 --------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~-------~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 214 --------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP-------LWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp --------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H-------HHHHHHHHHHT-------------------
T ss_pred --------HHHHHHHHHHhcccccccccccccccccccccccc-------cccccccccccccccccccccccccccccc
Confidence 34567889999999999999999999999888775 788899999999999999999999998754
Q ss_pred H
Q 011858 445 R 445 (476)
Q Consensus 445 ~ 445 (476)
+
T Consensus 279 ~ 279 (280)
T PF13429_consen 279 R 279 (280)
T ss_dssp -
T ss_pred C
Confidence 3
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=6.5e-18 Score=137.53 Aligned_cols=323 Identities=15% Similarity=0.147 Sum_probs=249.3
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
..+|..++-.+.+|..++..| ++..|+..|..|++. +|..-.+++..|.+|..+|+-.-|+.-+.+++
T Consensus 32 ~~~~advekhlElGk~lla~~-Q~sDALt~yHaAve~-----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl 99 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARG-QLSDALTHYHAAVEG-----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVL 99 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHcC-----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHH
Confidence 345567788899999999999 599999999999984 67777899999999999999999999999999
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHhc
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGET--------DPRVGETCRYLAEAHVQAM 220 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g 220 (476)
++-+... .+....|.++.++|++++|+.-|..+++..... +.. ....-+.+......++..|
T Consensus 100 elKpDF~---------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 100 ELKPDFM---------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred hcCccHH---------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 9865322 457889999999999999999999998753210 000 0011123344455566779
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011858 221 QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300 (476)
Q Consensus 221 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (476)
++..|+.+....+++.+ ..+..+...+.+|...|+...|+.-++.+-++ ..+....++.++.+++.
T Consensus 170 D~~~ai~~i~~llEi~~--------Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL------s~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQP--------WDASLRQARAKCYIAEGEPKKAIHDLKQASKL------SQDNTEGHYKISQLLYT 235 (504)
T ss_pred chhhHHHHHHHHHhcCc--------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------cccchHHHHHHHHHHHh
Confidence 99999999999988752 34556778899999999999999999877442 23335678899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH---------HHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 301 LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL---------ADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 301 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
.|+.+.++...++++++- +++......|-.+ +.-....++|.++++..++.++.-+. ..+.
T Consensus 236 vgd~~~sL~~iRECLKld-----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~-----~~~i 305 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLD-----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE-----ETMI 305 (504)
T ss_pred hhhHHHHHHHHHHHHccC-----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc-----ccce
Confidence 999999999999999881 2222222222222 33345667888888888888775433 1233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
.......+..|+..-|++.+|+..+.+++++.+++. .++...+.+|.....|+.|+.-|++|.+.-
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv-------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV-------QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 455667788999999999999999999999888764 899999999999999999999999998753
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.1e-17 Score=141.45 Aligned_cols=285 Identities=17% Similarity=0.133 Sum_probs=228.3
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhhccccC
Q 011858 78 LLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLG--KFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~ 155 (476)
-...+..+...|+ ++.|++.+. .+++. +......+-.+|..+++.+| ++.+|..+...++.+..-.
T Consensus 422 ei~ka~~~lk~~d-~~~aieilk----v~~~k------dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn- 489 (840)
T KOG2003|consen 422 EINKAGELLKNGD-IEGAIEILK----VFEKK------DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN- 489 (840)
T ss_pred hhhHHHHHHhccC-HHHHHHHHH----HHHhc------cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC-
Confidence 3566777888885 888877653 33332 23333345566666666643 7899999999998876421
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEI 235 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (476)
..++.+.|.+.+..|++++|.+.|++++.. +.....+++++|..+..+|++++|+.+|-+.-.+
T Consensus 490 --------~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 490 --------AAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred --------HHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence 145788999999999999999999999864 6677899999999999999999999999998877
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 236 HRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKAL 315 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 315 (476)
... .+.++..++.+|..+.+..+|++++.++.. ..+....++..+|.+|-+.|+-.+|..++-...
T Consensus 554 l~n--------n~evl~qianiye~led~aqaie~~~q~~s------lip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 554 LLN--------NAEVLVQIANIYELLEDPAQAIELLMQANS------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 744 355689999999999999999999998744 335556778999999999999999999998887
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 316 TVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKL 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (476)
.. .|....+...||..|....-+++|+.+|+++.-+.+ ........++.|+.+.|+|++|.+.
T Consensus 620 ry--------fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp---------~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 620 RY--------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP---------NQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cc--------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc---------cHHHHHHHHHHHHHhcccHHHHHHH
Confidence 76 677788888999999999999999999999976532 3456677789999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHhh
Q 011858 396 LQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (476)
|+.....+++.. .++..|.++.-.+|
T Consensus 683 yk~~hrkfpedl-------dclkflvri~~dlg 708 (840)
T KOG2003|consen 683 YKDIHRKFPEDL-------DCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhCccch-------HHHHHHHHHhcccc
Confidence 999888887775 66666666665555
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=6.9e-17 Score=146.57 Aligned_cols=319 Identities=12% Similarity=0.020 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+......|......| +++.|...+.++.+. .+.....+...|.++...|+++.|..++.++.+..+.
T Consensus 83 k~~~~~~~glla~~~g-~~~~A~~~l~~~~~~-----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~ 150 (409)
T TIGR00540 83 KAQKQTEEALLKLAEG-DYAKAEKLIAKNADH-----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN 150 (409)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHhhc-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3455577788888898 599999998877663 2333456678899999999999999999999876542
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
.. +.+....+.++...|++++|...+++.++. .|....++..++.++...|++++|.+.+.+..
T Consensus 151 ~~--------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 151 DN--------ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred Cc--------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 112445689999999999999999998886 56667889999999999999999999998887
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 234 EIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG-QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQ 312 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 312 (476)
+.... +. ............-....+..+++.+.+.++... .+ ..+....++..++..+...|++++|.+.++
T Consensus 215 k~~~~--~~--~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~---~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 215 KAGLF--DD--EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN---QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HcCCC--CH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 65211 11 111111111111223333444444455544331 11 112346678889999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHH--HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHH
Q 011858 313 KALTVFKSSKGDNHPSVASV--FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPE 390 (476)
Q Consensus 313 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 390 (476)
++++. .|+.... ...........++.+.+++.++++++..+. .+. ...+..+|+++...|+++
T Consensus 288 ~~l~~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~------~~~-~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 288 DGLKK--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD------KPK-CCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHHhh--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC------Chh-HHHHHHHHHHHHHcccHH
Confidence 99997 3333221 122223334457888899999999886433 222 367889999999999999
Q ss_pred HHHHHHHH--HHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 391 EALKLLQR--AMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 391 ~A~~~~~~--a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
+|.++|++ +++..++. ..+..+|.++.+.|+.++|.++|++++...-..++.
T Consensus 353 ~A~~~le~a~a~~~~p~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~~ 406 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQDN 406 (409)
T ss_pred HHHHHHHHhHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 99999995 55444433 345689999999999999999999999877666553
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.6e-18 Score=138.94 Aligned_cols=286 Identities=18% Similarity=0.109 Sum_probs=224.5
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCC--hhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPS--LDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
..|.....++.... +... +...|-......+++-..... +.. ......-..+|.||+++|-+.+|...++.+
T Consensus 176 ~~p~l~kaLFey~f--yhen-Dv~~aH~~~~~~~~~~~a~~s---~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlqss 249 (478)
T KOG1129|consen 176 ERPTLVKALFEYLF--YHEN-DVQKAHSLCQAVLEVERAKPS---GSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSS 249 (478)
T ss_pred cChHHHHHHHHHHH--Hhhh-hHHHHHHHHHHHHHHHhcccc---ccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHH
Confidence 34555555555433 3333 366666555555444222211 111 222234457999999999999999999999
Q ss_pred hhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHH
Q 011858 148 ISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEE 227 (476)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 227 (476)
+...+. + +.+..|+.+|....+...|+..|.+.++. .|.....+..++.++..++++++|.+
T Consensus 250 L~q~~~------~----dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~ 311 (478)
T KOG1129|consen 250 LTQFPH------P----DTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQ 311 (478)
T ss_pred hhcCCc------h----hHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHH
Confidence 987642 2 45889999999999999999999999886 56777888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 011858 228 LCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEA 307 (476)
Q Consensus 228 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 307 (476)
+|+.+++..+.+.+. .-.+|.-|+.-++.+-|+.+|++.+.+- ......++++|.+.+..++++-+
T Consensus 312 lYk~vlk~~~~nvEa--------iAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 312 LYKLVLKLHPINVEA--------IACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhcCCcccee--------eeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhh
Confidence 999999876554332 4456788899999999999999887643 23356789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011858 308 VFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD 387 (476)
Q Consensus 308 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (476)
+..|++++....+ ....+.+|+++|.+....||+.-|..+|+-++... .+...+++++|.+-.+.|
T Consensus 378 L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---------~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 378 LPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---------AQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhccC---------cchHHHHHhHHHHHhhcC
Confidence 9999999998643 45568999999999999999999999999888742 345889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 011858 388 EPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 388 ~~~~A~~~~~~a~~~~~~~~ 407 (476)
+.++|..++..+-...+...
T Consensus 444 ~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred chHHHHHHHHHhhhhCcccc
Confidence 99999999999988877654
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2.5e-16 Score=127.36 Aligned_cols=276 Identities=17% Similarity=0.203 Sum_probs=219.7
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCch
Q 011858 80 KLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADH 159 (476)
Q Consensus 80 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 159 (476)
-.|..+.... +.++|++.|...++. ++...++...||+.|.+.|..+.|+...+..++...-..
T Consensus 40 v~GlNfLLs~-Q~dKAvdlF~e~l~~-----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~---- 103 (389)
T COG2956 40 VKGLNFLLSN-QPDKAVDLFLEMLQE-----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF---- 103 (389)
T ss_pred HhHHHHHhhc-CcchHHHHHHHHHhc-----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch----
Confidence 3444455554 699999999888873 678888999999999999999999999887766532111
Q ss_pred hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 160 ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
.....++..||.-|+..|-++.|+..|....+. ......++..|..+|....+|++|++..++..++.++.
T Consensus 104 -~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 104 -EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred -HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 112356899999999999999999999987764 33345688899999999999999999988887766554
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 240 SEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFK 319 (476)
Q Consensus 240 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 319 (476)
. ...++..+..++..+....+++.|...+.+|+. .++....+-..+|.++...|+|+.|++.++.+++.
T Consensus 175 ~---~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-- 243 (389)
T COG2956 175 Y---RVEIAQFYCELAQQALASSDVDRARELLKKALQ------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-- 243 (389)
T ss_pred c---hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--
Confidence 4 457889999999999999999999999999976 45556677788999999999999999999999886
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
|+.....+...|..+|..+|+.++.+.++.++.+.... ......++.+-....-.+.|..++.+-
T Consensus 244 -----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 244 -----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred -----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 45567889999999999999999999999999987644 234445556556666677787777766
Q ss_pred HHHHHhc
Q 011858 400 MKLLEDK 406 (476)
Q Consensus 400 ~~~~~~~ 406 (476)
+...|..
T Consensus 309 l~r~Pt~ 315 (389)
T COG2956 309 LRRKPTM 315 (389)
T ss_pred HhhCCcH
Confidence 6554443
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=6.3e-18 Score=130.26 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=184.5
Q ss_pred HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 162 AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
....+...||.-|...|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++++.+.++.++
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc
Confidence 33467899999999999999999999999998 7888999999999999999999999999999999888776
Q ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 242 PASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 242 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 321 (476)
. ++|.|..++.+|++++|...|++|+. .+.-...+.++.|+|.|..+.|+++.|..+|++++++
T Consensus 105 V--------LNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---- 168 (250)
T COG3063 105 V--------LNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---- 168 (250)
T ss_pred h--------hhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh----
Confidence 5 89999999999999999999999865 4566677889999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 322 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
++........++..+...|++..|..++++...... ..+..+.....+-...|+-+.+-.+=.+...
T Consensus 169 ----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 169 ----DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ----CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 788888999999999999999999999998876532 2366777777888889999999888877777
Q ss_pred HHHhc
Q 011858 402 LLEDK 406 (476)
Q Consensus 402 ~~~~~ 406 (476)
.+|..
T Consensus 236 ~fP~s 240 (250)
T COG3063 236 LFPYS 240 (250)
T ss_pred hCCCc
Confidence 66655
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=2.4e-17 Score=160.61 Aligned_cols=302 Identities=14% Similarity=0.011 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.+......+...| ++++|+..|+...... +..+ ...++..+...+...++++.|..++.......- .
T Consensus 89 ~~~~~i~~l~~~g-~~~~Al~~f~~m~~~~--------~~~~-~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---~ 155 (697)
T PLN03081 89 SLCSQIEKLVACG-RHREALELFEILEAGC--------PFTL-PASTYDALVEACIALKSIRCVKAVYWHVESSGF---E 155 (697)
T ss_pred eHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---C
Confidence 5667777788888 4889988887754310 0111 233566666777777777777777776655421 1
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
++ ..++..+...|...|++++|...|++..+ + ...+|..+...|.+.|++++|+..|++.++..
T Consensus 156 ~~-----~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 156 PD-----QYMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred cc-----hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 11 13366667777777777777777766431 1 23456667777777777777777777765321
Q ss_pred HhcCCC----------------------------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH
Q 011858 237 RAHSEP----------------------------ASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA 288 (476)
Q Consensus 237 ~~~~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 288 (476)
...... .......+++.+...|.+.|++++|.+.|++.. ....
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~ 290 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------EKTT 290 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------CCCh
Confidence 100000 000012235667778888888888888887531 1234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
.+|+.+...|...|++++|+..|++..+. +-.+ ...++..+...+.+.|++++|.+.+..+++..-..
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~----- 358 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL----- 358 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-----
Confidence 56777888888888888888888776543 1122 23466667777777777777777776666542110
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
...++..+...|.+.|++++|.+.|++..+ .+ ..+|..+...|.+.|+.++|++.|++..
T Consensus 359 ---d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d-------~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 359 ---DIVANTALVDLYSKWGRMEDARNVFDRMPR---KN-------LISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred ---CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CC-------eeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 133455556666666666666666655421 01 1345555555666666666666655544
No 45
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=4.4e-16 Score=157.73 Aligned_cols=340 Identities=11% Similarity=0.011 Sum_probs=254.7
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
.......+...+......|++.....+++..-... ...++ ......+.++...|++++|..++..+......
T Consensus 370 ~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~~~~~----~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~ 441 (903)
T PRK04841 370 AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV----LLENP----RLVLLQAWLAQSQHRYSEVNTLLARAEQELKD 441 (903)
T ss_pred HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----HhcCc----chHHHHHHHHHHCCCHHHHHHHHHHHHHhccc
Confidence 34455667777888888899888777765531111 01111 12456778888999999999999988766432
Q ss_pred HhcC-CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 197 ALGE-TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 197 ~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
.... +......+...++.++...|++++|..++++++...+. ........+...+|.++...|++++|...+++++
T Consensus 442 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 442 RNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred cCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1000 11224456667889999999999999999999875322 1122345567889999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 276 MAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
......+.......++.++|.++...|++++|..++++++.+.....+...+....++..+|.++...|++++|...+++
T Consensus 519 ~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 519 QMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 98888777777777889999999999999999999999999988764333344455677889999999999999999999
Q ss_pred HHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCC-------------------------
Q 011858 356 ALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQ------------------------- 410 (476)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------------------------- 410 (476)
++.+.... + .......+..++.++...|++++|...+.++..+.... +..
T Consensus 599 al~~~~~~--~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 599 GLEVLSNY--Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred hHHhhhcc--C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 99987653 1 22345677889999999999999999999997765432 100
Q ss_pred --------------chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccccccccc
Q 011858 411 --------------STIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 411 --------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
......+..++.++...|++++|...+++++...+..+.. .....++..+|.++...|+..+
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~--~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 674 NWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM--SDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHHHcCCHHH
Confidence 0011113568889999999999999999999988777654 3445677888999988888654
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.6e-17 Score=141.38 Aligned_cols=228 Identities=17% Similarity=0.181 Sum_probs=146.0
Q ss_pred hHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 166 GYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
-...+|...+...++..|+..|..++++. .....+.+.+-+|+..|.+.+.+..+.++++......... .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-k 295 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-K 295 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-H
Confidence 35677888888888888888888888873 3445677788888888888888888888776554322211 1
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--------------------CChhHHHHHHHHHHHHHHcCCHH
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANG--------------------QDNEVAAIDVSIGNIYLSLCRFD 305 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~ 305 (476)
.++.++..+|..|...++++.++.+|.+++...+... ..+..+.-...-|+.++..|+|.
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 3455566677788888888888888888765332200 11222233334466666666666
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
.|+.+|.+++.. +|.....|.+.|.+|..+|.+..|+...+.++++. +.....|..-|.++..
T Consensus 376 ~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~---------p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 376 EAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD---------PNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------chHHHHHHHHHHHHHH
Confidence 666666666665 56666666666666666666666666666666652 2345566666666666
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh
Q 011858 386 VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV 427 (476)
Q Consensus 386 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (476)
+.+|++|++.|+++++..++.. .+...+.++...+
T Consensus 439 mk~ydkAleay~eale~dp~~~-------e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNA-------EAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhH-------HHHHHHHHHHHHh
Confidence 6666666666666666654442 4444445554443
No 47
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=2e-16 Score=156.14 Aligned_cols=308 Identities=14% Similarity=0.117 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.+..+-..+...| ++++|...++++.+. |..++ ..++..+...|.+.|++++|..+|++..+... .
T Consensus 439 Tyn~LL~a~~k~g-~~e~A~~lf~~M~~~---------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv---~ 504 (1060)
T PLN03218 439 TFNMLMSVCASSQ-DIDGALRVLRLVQEA---------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV---E 504 (1060)
T ss_pred HHHHHHHHHHhCc-CHHHHHHHHHHHHHc---------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC---C
Confidence 3444455556666 366666666665442 22333 34677788888888888888888888765321 1
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
++ ..+|..+...|...|++++|+..|++..+. .-.| ...+|..+...+.+.|++++|.+.+.+.....
T Consensus 505 Pd-----vvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 505 AN-----VHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred CC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 11 134777888888888888888888776553 1122 24567777888888888888888887775431
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 237 RAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALT 316 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 316 (476)
... .+ ...++..+...|.+.|++++|.+.|++..+ .+..+ ...+|+.+...|.+.|++++|+..|++..+
T Consensus 573 ~gi-~P----D~vTynaLI~ay~k~G~ldeA~elf~~M~e----~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 573 HPI-DP----DHITVGALMKACANAGQVDRAKEVYQMIHE----YNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred CCC-CC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 11 134466677777788888888887776533 22222 234666777777777777777777777654
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 317 VFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLL 396 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (476)
. +-.|+ ..+|..+...|.+.|++++|.++++++.+.... + ...++..+...|.+.|++++|.+.|
T Consensus 643 ~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~------p--d~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 643 K------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK------L--GTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred c------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------C--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 22232 456666777777777777777777776653211 1 1346666777777777777777777
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 397 QRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
++.... +..+. ...|..+...|.+.|++++|.++|++..
T Consensus 708 ~eM~~~-----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 708 EDIKSI-----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHc-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 665432 11111 2456666777777777777777776654
No 48
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.81 E-value=2.8e-16 Score=141.44 Aligned_cols=339 Identities=15% Similarity=0.093 Sum_probs=240.2
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
+|+.+..+..+|..+...| +++.+...+.++.+.... .....+.....+.++...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGG-ERPAAAAKAAAAAQALAA--------RATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6888999999999999998 589988888777765432 2334556778899999999999999999999988
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCK 230 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (476)
.+.. . .++.. +..+...|++..+.....+++.. ....++.....+..+|.++...|++++|+..++
T Consensus 73 ~P~~-----~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 73 YPRD-----L----LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred CCCc-----H----HHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6522 1 12333 66666667666666666665554 234567777888899999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 231 KTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFS 310 (476)
Q Consensus 231 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 310 (476)
+++++.+.. ..++..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..
T Consensus 139 ~al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 139 RALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999976543 344788999999999999999999998764322 2223345677899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHH--HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011858 311 YQKALTVFKSSKGDNHPSVASV--FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 311 ~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (476)
+++++... ......... ...+...+...|....+..+ +.+........ .. ..........+.++...|+
T Consensus 209 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~--~~-~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 209 YDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF--PD-HGLAFNDLHAALALAGAGD 279 (355)
T ss_pred HHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc--Cc-ccchHHHHHHHHHHhcCCC
Confidence 99986441 101111111 11223334445554444433 22222211110 11 1112222357888889999
Q ss_pred HHHHHHHHHHHHHHHHh---ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCc
Q 011858 389 PEEALKLLQRAMKLLED---KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKS 452 (476)
Q Consensus 389 ~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 452 (476)
.++|...++........ . +.......+....+.++...|++++|++.+..++.+...+|+..-
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~a 345 (355)
T cd05804 280 KDALDKLLAALKGRASSADDN-KQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHA 345 (355)
T ss_pred HHHHHHHHHHHHHHHhccCch-hhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 99999999988877765 2 233334566678899999999999999999999999999988643
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1.2e-17 Score=157.11 Aligned_cols=249 Identities=11% Similarity=-0.017 Sum_probs=192.3
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhc---------CChhHHHHHHHHhhhhccccCCCchhHH
Q 011858 92 PSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSL---------GKFEEAVPALEKAISVPDVTRGADHALA 162 (476)
Q Consensus 92 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 162 (476)
+++|+.+|++|+++ +|..+.++..+|.++... +++++|+..+++++++.+. ++
T Consensus 277 ~~~A~~~~~~Al~l-----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-----~~-- 338 (553)
T PRK12370 277 LQQALKLLTQCVNM-----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-----NP-- 338 (553)
T ss_pred HHHHHHHHHHHHhc-----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----CH--
Confidence 45666666666653 677788888999887644 3489999999999998753 22
Q ss_pred HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Q 011858 163 KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 242 (476)
.++..+|.++...|++++|+..|++++++ +|....+++.+|.++...|++++|+..+++++++.+....
T Consensus 339 --~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~- 407 (553)
T PRK12370 339 --QALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA- 407 (553)
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-
Confidence 45889999999999999999999999998 6777888999999999999999999999999998755321
Q ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 011858 243 ASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSK 322 (476)
Q Consensus 243 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 322 (476)
.+..++.++...|++++|+..+++++.. ..+.....+..+|.++...|++++|...+.+....
T Consensus 408 -------~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----- 470 (553)
T PRK12370 408 -------AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ----- 470 (553)
T ss_pred -------hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-----
Confidence 1334555677799999999999987542 12344557788999999999999999999887554
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 323 GDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 323 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
.+........++..|...| ++|...+++.++..... ......+..++.-.|+.+.+..+ +++.+
T Consensus 471 ---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 471 ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred ---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 5666778888898988888 48888888877654431 11122367778888888888776 55543
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=3.5e-17 Score=154.10 Aligned_cols=261 Identities=10% Similarity=0.014 Sum_probs=198.9
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHc---------CChhhHHHHHHHHH
Q 011858 124 LHVLAAIYCS---LGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSML---------GQVDRSIGCYEEGL 191 (476)
Q Consensus 124 ~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al 191 (476)
++..|..+.. .+++++|+.+|++++++.+.. . .++..+|.++... +++++|+..+++++
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-----a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-----I----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-----H----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455554433 345789999999999987532 2 3467777776543 34789999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011858 192 KIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHL 271 (476)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 271 (476)
++ +|....++..+|.++...|++++|+..|++++++.+.. ..+++.+|.++...|++++|+..+
T Consensus 332 ~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 332 EL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS--------ADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87 67778899999999999999999999999999986442 345888999999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHH
Q 011858 272 VLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKS 351 (476)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 351 (476)
++++++ ++.....+..++.+++..|++++|+..+++++.. ..+.....+..+|.++..+|++++|+.
T Consensus 396 ~~Al~l------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 396 NECLKL------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred HHHHhc------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 998764 2222333445566677899999999999998875 135567788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHH
Q 011858 352 YCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYE 431 (476)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (476)
.+++..... +........++.+|...| ++|...+++.++.......+. ..+..+|.-.|+.+
T Consensus 463 ~~~~~~~~~---------~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~-------~~~~~~~~~~g~~~ 524 (553)
T PRK12370 463 LTKEISTQE---------ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNP-------GLLPLVLVAHGEAI 524 (553)
T ss_pred HHHHhhhcc---------chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCc-------hHHHHHHHHHhhhH
Confidence 998865532 223556777888888888 488888888777666553222 23677888889888
Q ss_pred HHHHHHHHHH
Q 011858 432 EARSSFESAI 441 (476)
Q Consensus 432 ~A~~~~~~a~ 441 (476)
.+..+ +++.
T Consensus 525 ~~~~~-~~~~ 533 (553)
T PRK12370 525 AEKMW-NKFK 533 (553)
T ss_pred HHHHH-HHhh
Confidence 88877 5554
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=5.3e-17 Score=148.51 Aligned_cols=326 Identities=16% Similarity=0.164 Sum_probs=247.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHH
Q 011858 64 FTDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPA 143 (476)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (476)
+.++...+|.....+..+|.+|..+|+ .++++.++-.|..+ .|.....|..++.....+|++++|.-+
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL-----------~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHL-----------NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHccc-HHHHHHHHHHHHhc-----------CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 445567889999999999999999995 99999988877664 344447899999999999999999999
Q ss_pred HHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHH
Q 011858 144 LEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFD 223 (476)
Q Consensus 144 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 223 (476)
|.+|++..+... ......+.+|.+.|+...|...|.+++.+.... +....-......+..+...++-+
T Consensus 230 y~rAI~~~p~n~---------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~---d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 230 YSRAIQANPSNW---------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV---DIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HHHHHhcCCcch---------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch---hHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999976432 457889999999999999999999999884311 11223334455688888888889
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------------HHHHc
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM----------------------AMIAN 281 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------~~~~~ 281 (476)
.|++.++.++........ ...++.++.++.....++.+......-.. ++...
T Consensus 298 ~a~~~le~~~s~~~~~~~------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEAS------LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HHHHHHHHHHhhcccccc------ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 999999999883322221 12256788999999999999888765543 11111
Q ss_pred CC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 282 GQ-DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 282 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
.+ ...+..+...++.+..+.++..+++..+..--.. ........+..++.++...|++.+|+.+|......-
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 11 1122223556666666666666666655432221 134567889999999999999999999998887642
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
. .....+|..+|.+|..+|.+++|+++|++++...+.+. .+...|+.++..+|+.++|.+.+++.
T Consensus 445 ~--------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~-------D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 445 G--------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL-------DARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred c--------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch-------hhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 2 22377899999999999999999999999999988875 77789999999999999999888774
Q ss_pred H
Q 011858 441 I 441 (476)
Q Consensus 441 ~ 441 (476)
.
T Consensus 510 ~ 510 (895)
T KOG2076|consen 510 I 510 (895)
T ss_pred c
Confidence 4
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.9e-16 Score=128.07 Aligned_cols=272 Identities=17% Similarity=0.159 Sum_probs=217.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
+..|.-+.-..+.++|+..|...++..+.. +++...||.+|...|+.+.|+...+..++.-. -....
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t---------~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd----lT~~q 105 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPET---------FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD----LTFEQ 105 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchh---------hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC----CchHH
Confidence 445667777889999999999998865422 36789999999999999999999887765310 01223
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
...++..||.-|...|-+|.|+..|....+... ..-.++..|..+|....++++|++..++...+ ......
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e--------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~ 176 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE--------FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYR 176 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh--------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccch
Confidence 456889999999999999999999998876332 22344788899999999999999988865432 222345
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
..++..|..++..+....+.+.|...+.+|++. ++....+-..+|.++...|+|++|++.++.+++.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ----- 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ----- 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----
Confidence 678899999999999999999999999999998 7888899999999999999999999999999886
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
++.....+...+..+|..+|+.++.+.++.++.+..... .+...++..-....-.+.|..++.+-+.
T Consensus 244 ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--------~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 244 ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--------DAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred ---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--------cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 455678899999999999999999999999998876554 3444566666666666666666655543
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=1.2e-15 Score=150.56 Aligned_cols=312 Identities=15% Similarity=0.091 Sum_probs=241.6
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
....+..+...|...|+ +++|...|++..+. |..|+ ..+|..+...|.+.|++++|+.+|++.....-
T Consensus 471 D~~tynsLI~~y~k~G~-vd~A~~vf~eM~~~---------Gv~Pd-vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv- 538 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGK-VDAMFEVFHEMVNA---------GVEAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSKNV- 538 (1060)
T ss_pred CHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHc---------CCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC-
Confidence 34567788888999995 99999998887653 33343 45788999999999999999999999865421
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
.++ ..+|..+...|...|++++|.+.|.++...... -.|+ ..++..+...|.+.|++++|.++|+++.
T Consensus 539 --~PD-----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 539 --KPD-----RVVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred --CCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111 145899999999999999999999988753111 1222 4678888899999999999999999886
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 234 EIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
+.. -. ....+|..+...|.+.|++++|++.|++... .+..++ ..++..+...|...|++++|.+++++
T Consensus 607 e~g----i~---p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 607 EYN----IK---GTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKPD-EVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HcC----CC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 532 11 1234588899999999999999999997643 334444 45788899999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
..+. + ......++..+...|.+.|++++|.++|++...... .+ ...+|..+...|.+.|++++|+
T Consensus 675 M~k~------G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~------~P--dvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 675 ARKQ------G-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL------RP--TVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HHHc------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------CC--CHHHHHHHHHHHHHCCCHHHHH
Confidence 8764 2 233467899999999999999999999998865421 11 2567999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 394 KLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
++|++.... +..+. ..+|..+...+.+.|++++|.+++.++++
T Consensus 740 elf~eM~~~-----Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 740 EVLSEMKRL-----GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHc-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999987643 22222 24666777899999999999999998865
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=3.5e-17 Score=138.46 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=170.8
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
.......+..+|.++...|++++|+..++++++..+. ...++..+|.++...|++++|++.+++++...
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD--------DYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3456788999999999999999999999999876432 24567889999999999999999999987642
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+.....+.++|.++...|++++|+.++++++.. ...+.....+..+|.++...|++++|..++++++...+
T Consensus 96 ---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 96 ---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred ---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 233467889999999999999999999999875 22345567788999999999999999999999998743
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
. ....+..+|.++...|++++|+.++++++...+.. ...+..++.++...|+.++|..+.+...
T Consensus 167 ~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 167 Q---------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-------AESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred C---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 24578899999999999999999999999873222 2555678999999999999999887765
Q ss_pred HH
Q 011858 442 AK 443 (476)
Q Consensus 442 ~~ 443 (476)
..
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 43
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=6.6e-19 Score=152.02 Aligned_cols=267 Identities=24% Similarity=0.270 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCc
Q 011858 79 LKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGAD 158 (476)
Q Consensus 79 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 158 (476)
+.+|..++..| ++++|++.+.+.+... ..+.....+..+|.+....+++++|+..|++.+...+...
T Consensus 12 l~~A~~~~~~~-~~~~Al~~L~~~~~~~---------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~--- 78 (280)
T PF13429_consen 12 LRLARLLYQRG-DYEKALEVLKKAAQKI---------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP--- 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-cccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccc---
Confidence 47799999998 5999999997665531 1355567888899999999999999999999988754211
Q ss_pred hhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 159 HALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
..+..++.+ ...+++++|+.+++++.+.. .....+.....++...++++++...++++......
T Consensus 79 ------~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (280)
T PF13429_consen 79 ------QDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA 142 (280)
T ss_dssp -------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--
T ss_pred ------ccccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC
Confidence 235666666 68999999999998887642 12344556677889999999999999997742211
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 239 HSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
......+..+|.++...|+.++|++.+++++.. .|....+...++.++...|+++++...+....+..
T Consensus 143 ------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 143 ------PDSARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp -------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 133556888999999999999999999999774 34556677889999999999999888888877662
Q ss_pred HhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 319 KSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQR 398 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (476)
+.....+..+|.++..+|++++|+.+|++++...+. ...++..+|.++...|+.++|..++++
T Consensus 211 --------~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~---------d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 211 --------PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD---------DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp --------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT----------HHHHHHHHHHHT--------------
T ss_pred --------cCHHHHHHHHHHHhcccccccccccccccccccccc---------ccccccccccccccccccccccccccc
Confidence 333456778899999999999999999999987443 367788999999999999999999999
Q ss_pred HHHHH
Q 011858 399 AMKLL 403 (476)
Q Consensus 399 a~~~~ 403 (476)
++...
T Consensus 274 ~~~~l 278 (280)
T PF13429_consen 274 ALRLL 278 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 87654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=3.8e-17 Score=138.30 Aligned_cols=202 Identities=20% Similarity=0.185 Sum_probs=170.2
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
...+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----
Confidence 356899999999999999999999999876 45667889999999999999999999999999875332
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
...+.++|.++...|++++|+..+++++.. ...+.....+..+|.++...|++++|..++.+++..
T Consensus 99 ----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 164 (234)
T TIGR02521 99 ----GDVLNNYGTFLCQQGKYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI------ 164 (234)
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 245788999999999999999999998753 223344567788999999999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
.+.....+..+|.++...|++++|..++++++...+. ....+..++.++...|+.++|..+.+.....
T Consensus 165 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 165 --DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ---------TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred --CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555778899999999999999999999999987221 2445567889999999999999988776544
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=3.3e-16 Score=141.33 Aligned_cols=309 Identities=13% Similarity=0.040 Sum_probs=215.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+...+..|......| ++++|.....++-+. .+.| ...+...+......|+++.|..+++++.+..+.
T Consensus 83 ~~~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~---------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~ 150 (398)
T PRK10747 83 RARKQTEQALLKLAEG-DYQQVEKLMTRNADH---------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELADN 150 (398)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc---------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 4455677788888888 488888666554331 1122 223444566669999999999999999876542
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
.. . ......+.++...|++++|+..+++..+. .|....++..++.+|...|++++|+..+.+..
T Consensus 151 ~~-----~---~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 151 DQ-----L---PVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred ch-----H---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1 12345589999999999999999999876 56777889999999999999999999998887
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 234 EIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
+...............++..+........+-+...+.++..- . ..+....+...++..+...|+.++|...+++
T Consensus 215 k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp---~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 215 KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS---R---KTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC---H---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653221100000000122222222222222222222222211 1 1233466778899999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
+++. ..++ ......+. ...++.+++++.+++.++..++ ....+..+|.++...+++++|.
T Consensus 289 ~l~~------~~~~---~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~---------~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 289 GLKR------QYDE---RLVLLIPR--LKTNNPEQLEKVLRQQIKQHGD---------TPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHhc------CCCH---HHHHHHhh--ccCCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHCCCHHHHH
Confidence 9874 2232 22222222 2458999999999998876433 3678899999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 394 KLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
++|+++++..++. ..+..++.++.+.|+.++|..+|++++.+.
T Consensus 349 ~~le~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 349 LAFRAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999886665 456689999999999999999999998765
No 58
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.79 E-value=3.1e-16 Score=152.97 Aligned_cols=267 Identities=13% Similarity=0.057 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 155 (476)
..+..+...+...+ +++.+...+....+. |..++ ..++..+...|.+.|++++|..+|++..+-
T Consensus 124 ~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~---------g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~----- 187 (697)
T PLN03081 124 STYDALVEACIALK-SIRCVKAVYWHVESS---------GFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPER----- 187 (697)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHh---------CCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----
Confidence 45556666666676 477777777665553 43444 457888899999999999999999987531
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH----------------------------hcCCchhHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA----------------------------LGETDPRVGE 207 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~~~~~~~~~~ 207 (476)
+ ..+|..+...|...|++++|+..|++.++..... ....-.....
T Consensus 188 --~-----~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 188 --N-----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred --C-----eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 1 1348889999999999999999999986531000 0000001123
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhH
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEV 287 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 287 (476)
++..+...|.+.|++++|.+.|++... . ...+|+.+...|...|++++|++.|++... .+..++
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~----~g~~pd- 324 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-------K----TTVAWNSMLAGYALHGYSEEALCLYYEMRD----SGVSID- 324 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-------C----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-
Confidence 456677888899999999988876521 1 234588888999999999999999987633 233333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
..++..+...+...|++++|.+.+...++. + ......++..|...|.+.|++++|...|++..+.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~------g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-------- 389 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT------G-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-------- 389 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh------C-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------
Confidence 235666777777777777777777666553 1 1222344555555555555555555555543210
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
...+|+.+...|.+.|+.++|++.|++..
T Consensus 390 ----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 390 ----NLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred ----CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 02345555555555555555555555543
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=6.1e-17 Score=124.87 Aligned_cols=208 Identities=15% Similarity=0.064 Sum_probs=176.1
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
......+...||.-|+..|++..|...+++++++.++. ..++..++.+|...|+.+.|.+.|++|+.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~--------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls----- 97 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY--------YLAHLVRAHYYQKLGENDLADESYRKALS----- 97 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--------HHHHHHHHHHHHHcCChhhHHHHHHHHHh-----
Confidence 34566788999999999999999999999999987653 44588999999999999999999999977
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
..+....+++|.|..++.+|++++|..+|++|+.. +..+....++.|+|.|..+.|+++.|..+|++++++.+
T Consensus 98 -l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 98 -LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred -cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 45667889999999999999999999999999987 66677789999999999999999999999999999865
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
+. ......++..+...|++..|..++++...... ..+..+....++-...|+-+.|-+|=.+..
T Consensus 171 ~~---------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 171 QF---------PPALLELARLHYKAGDYAPARLYLERYQQRGG-------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred CC---------ChHHHHHHHHHHhcccchHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 53 55678899999999999999999988765433 224666666777788899988887766655
Q ss_pred HHHH
Q 011858 442 AKLR 445 (476)
Q Consensus 442 ~~~~ 445 (476)
..++
T Consensus 235 r~fP 238 (250)
T COG3063 235 RLFP 238 (250)
T ss_pred HhCC
Confidence 4443
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1e-16 Score=138.41 Aligned_cols=225 Identities=16% Similarity=0.105 Sum_probs=164.2
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHH
Q 011858 92 PSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLG 171 (476)
Q Consensus 92 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~ 171 (476)
.+.++..+.+++.... -.....+..++.+|.++...|++++|+..|++++++.+. .+ .+++.+|
T Consensus 42 ~e~~i~~~~~~l~~~~-------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-----~~----~a~~~lg 105 (296)
T PRK11189 42 QEVILARLNQILASRD-------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-----MA----DAYNYLG 105 (296)
T ss_pred HHHHHHHHHHHHcccc-------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-----CH----HHHHHHH
Confidence 5667777777665321 134566889999999999999999999999999998653 22 5689999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 011858 172 DTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADR 251 (476)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 251 (476)
.++...|++++|+..|++++++ +|....++.++|.++...|++++|+..+++++++.+... . ...+
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~-~~~~ 171 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y-RALW 171 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H-HHHH
Confidence 9999999999999999999997 677788999999999999999999999999998754421 1 1111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 252 RLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 252 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
..+....+++++|+..+.++.... +.... ..+.++...|++.++ ..++.+.+..+... ...+....
T Consensus 172 ---~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~e 237 (296)
T PRK11189 172 ---LYLAESKLDPKQAKENLKQRYEKL----DKEQW-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCE 237 (296)
T ss_pred ---HHHHHccCCHHHHHHHHHHHHhhC----Ccccc-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHH
Confidence 223456789999999998764311 11111 134555556666443 23333332211000 00345678
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
+|+++|.++...|++++|+.+|+++++..
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999873
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=9.2e-16 Score=147.31 Aligned_cols=348 Identities=11% Similarity=0.021 Sum_probs=213.1
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.|..+...+..+...++.|+ ++.|+..++++++. .|........+..++...|+.++|+.++++++.-
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~-----------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p 97 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKA-----------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS 97 (822)
T ss_pred CccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhh-----------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC
Confidence 34455578889999999994 99999999999875 2333212225666666667777777777777611
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCK 230 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (476)
.+ .. ...+..+|.++...|++++|++.|+++++. +|....++..++.++...++.++|+..++
T Consensus 98 ~n-----~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 98 MN-----IS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred CC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 10 01 022344466777777777777777777765 33344555555666666666666666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------------------------
Q 011858 231 KTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM---------------------------------- 276 (476)
Q Consensus 231 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---------------------------------- 276 (476)
++....+... .+..++.++...++..+|++.++++++
T Consensus 161 ~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 161 ELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 5554432200 011122222222333233333333321
Q ss_pred ---------------------------------------------HHHHcCCCh----h---------------------
Q 011858 277 ---------------------------------------------AMIANGQDN----E--------------------- 286 (476)
Q Consensus 277 ---------------------------------------------~~~~~~~~~----~--------------------- 286 (476)
+....+..| .
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 000000000 0
Q ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHH
Q 011858 287 --------------VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352 (476)
Q Consensus 287 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 352 (476)
-..+....|..|...++.++|+..|++++.-.... ...+........|-..|...+++++|..+
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 11233445666777777777777777765531100 00122333346778888999999999999
Q ss_pred HHHHHHHHcC-CC-----CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 011858 353 CENALRIYAR-PV-----PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM 426 (476)
Q Consensus 353 ~~~a~~~~~~-~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (476)
+++..+..+- .. ....+++.......++.++...|++.+|++.+++.+...|.+. .+...+|.++..
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~-------~l~~~~A~v~~~ 462 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ-------NLRIALASIYLA 462 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHh
Confidence 9999874331 00 0134455678888999999999999999999999999988885 788899999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccccc
Q 011858 427 VGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDR 473 (476)
Q Consensus 427 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 473 (476)
.|.+.+|...++.+..+.+ + . ..+...++.++..+|+++
T Consensus 463 Rg~p~~A~~~~k~a~~l~P---~--~---~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 463 RDLPRKAEQELKAVESLAP---R--S---LILERAQAETAMALQEWH 501 (822)
T ss_pred cCCHHHHHHHHHHHhhhCC---c--c---HHHHHHHHHHHHhhhhHH
Confidence 9999999999977765421 1 1 134456666666666654
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-15 Score=136.64 Aligned_cols=332 Identities=19% Similarity=0.123 Sum_probs=244.9
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhc-----------CChhHH
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSL-----------GKFEEA 140 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A 140 (476)
|.....++..+..+...-+..++++++..+++..+.... ....+.++..+|.+|..+ ....++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 555556666666666554579999999999999774442 344566788888887543 224678
Q ss_pred HHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Q 011858 141 VPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM 220 (476)
Q Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 220 (476)
++.++++++..+. ++ .+.+.++.-|..+++.+.|.++.++++++. ......+|..++.++...+
T Consensus 464 lqale~av~~d~~-----dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 464 LQALEEAVQFDPT-----DP----LVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred HHHHHHHHhcCCC-----Cc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhh
Confidence 8888888877642 22 347899999999999999999999999973 3345678999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCch-----------HH-HHHHH-----------------------HHHHHHHHhCCHH
Q 011858 221 QFDKAEELCKKTLEIHRAHSEPASL-----------EE-SADRR-----------------------LMALICEAKGDYE 265 (476)
Q Consensus 221 ~~~~A~~~~~~al~~~~~~~~~~~~-----------~~-~~~~~-----------------------~la~~~~~~g~~~ 265 (476)
++.+|+...+.+++-.+.+....+. .. ..+.. ..+.+....++..
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 9999999999999887764322000 00 00000 0001111122333
Q ss_pred HHHHHHHHHHHHHHHcC------------------C--ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 266 AALEHLVLASMAMIANG------------------Q--DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 266 ~A~~~~~~a~~~~~~~~------------------~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
+|.+...++........ + ....-..+...+..+...++.++|..++.++-.+
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-------- 679 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-------- 679 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------
Confidence 34444443333222100 0 0112345567788889999999999999999888
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALK--LLQRAMKLL 403 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~ 403 (476)
.+.....|+..|.++...|++.+|.+.|..++.+.+. ...+...+|.++.+.|+..-|.. .+..++++.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 6888999999999999999999999999999998543 26678899999999999888888 999999999
Q ss_pred HhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 404 EDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
+.++ .+|+.+|.++..+|+.++|.++|+.|+++-+..+-
T Consensus 751 p~n~-------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNH-------EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCH-------HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8886 99999999999999999999999999998665543
No 63
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.5e-16 Score=134.68 Aligned_cols=323 Identities=22% Similarity=0.240 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.+-..|...+..| +++.|+.+|..|+.+ +|.....+.+...+|..+|+|++|++--.+.+++.+...
T Consensus 4 e~k~kgnaa~s~~-d~~~ai~~~t~ai~l-----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~- 70 (539)
T KOG0548|consen 4 ELKEKGNAAFSSG-DFETAIRLFTEAIML-----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWA- 70 (539)
T ss_pred HHHHHHHhhcccc-cHHHHHHHHHHHHcc-----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchh-
Confidence 4556788889999 599999999999997 444667889999999999999999999999999876321
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc----------------
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM---------------- 220 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------- 220 (476)
..|..+|..+...|+|++|+..|.+.|+. ++.....+..++.++....
T Consensus 71 --------kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~ 134 (539)
T KOG0548|consen 71 --------KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLA 134 (539)
T ss_pred --------hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhh
Confidence 45999999999999999999999999987 4444555555555542110
Q ss_pred -----cHHHHHHHHHHHHHHHHhcC---------------------------------------CC------------C-
Q 011858 221 -----QFDKAEELCKKTLEIHRAHS---------------------------------------EP------------A- 243 (476)
Q Consensus 221 -----~~~~A~~~~~~al~~~~~~~---------------------------------------~~------------~- 243 (476)
++-.....|...++..+... .+ +
T Consensus 135 ~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 135 NLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDN 214 (539)
T ss_pred cChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchh
Confidence 00001111111111111100 00 0
Q ss_pred -----chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 244 -----SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 244 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
....+.-.-.+|.......+++.|++.|..++.+. .....+.+.+.+|+..|.+.+.+....++++.-
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVG 287 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh
Confidence 00124556788999999999999999999998754 335566788889999999998888888877764
Q ss_pred HhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC--C---------------CCChHHHHHHHHHHHH
Q 011858 319 KSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV--P---------------GTTAEEIAGGLTEISA 381 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~---------------~~~~~~~~~~~~~la~ 381 (476)
.+.. .+....+.++..+|..|...++++.|+.+|++++.-.+.-. . ....+..+.-...-|.
T Consensus 288 re~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 288 RELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred HHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 3321 01223456666788899999999999999999987655410 0 0011222344455688
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 382 IYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 382 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.++..|+|..|+.+|.+++...+++. ..|.+.|.||.++|++..|+...+.++++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDA-------RLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 89999999999999999998887764 88999999999999999999998888876
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=9.2e-17 Score=138.60 Aligned_cols=228 Identities=12% Similarity=0.026 Sum_probs=164.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 011858 177 LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL 256 (476)
Q Consensus 177 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 256 (476)
.+..+.++..+.+++...+ .+....+..++.+|.++...|++++|+..|++++++.+. ...+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--------MADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHH
Confidence 3466778888888775422 124456788999999999999999999999999987543 3456899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011858 257 ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL 336 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 336 (476)
++...|++++|+..|++++++ .+....++.++|.++...|++++|+..+++++++ .|...... ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~~~-~~ 171 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPYRA-LW 171 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH-HH
Confidence 999999999999999999763 3555678899999999999999999999999987 34333211 11
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHH
Q 011858 337 ADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGI 416 (476)
Q Consensus 337 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 416 (476)
..+....+++++|+..++++...... .. + ..+.++...|+..++ ..++.+.+..............+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~~-------~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLDK-------EQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCCc-------cc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 22345578899999999887643211 11 1 134455556666544 24444432221111111234578
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 417 EARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
|+.+|.++...|++++|+.+|++++++-
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999653
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.8e-15 Score=124.62 Aligned_cols=272 Identities=13% Similarity=0.102 Sum_probs=216.8
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
-+.....+..+|.+++..|++++|+..|+++..+.+.. +...-..|.++...|++++-...-...+..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~---------i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--- 295 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN---------VEAMDLYAVLLGQEGGCEQDSALMDYLFAK--- 295 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh---------hhhHHHHHHHHHhccCHhhHHHHHHHHHhh---
Confidence 45667788899999999999999999999998876522 234556677788888888777666666554
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
....+.-|+--+...+...++..|+.+-+++++..+.... .+...|.++...|+.++|+-.|+.|+.
T Consensus 296 -----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~--------alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 296 -----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE--------ALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred -----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch--------HHHhccHHHHhccchHHHHHHHHHHHh
Confidence 2233445666778888899999999999999887655433 377789999999999999999998865
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-HHHHH-cCChhHHHHHHH
Q 011858 277 AMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLA-DLYHR-TGKLRESKSYCE 354 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~ 354 (476)
+ .|....+|..+-.+|...|++.+|....+.++..+ +..+.++..+| .++.. ----++|..+++
T Consensus 363 L------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 363 L------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred c------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 3 45667888999999999999999999999998884 44466777775 44432 233578999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHH
Q 011858 355 NALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEAR 434 (476)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 434 (476)
+++.+. |....+-..++.++...|.++.++..+++.+...++. ..+..||.++...+.+++|.
T Consensus 429 k~L~~~---------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--------~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 429 KSLKIN---------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--------NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred hhhccC---------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--------HHHHHHHHHHHHhhhHHHHH
Confidence 998873 3457788889999999999999999999999988876 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 011858 435 SSFESAIAKL 444 (476)
Q Consensus 435 ~~~~~a~~~~ 444 (476)
++|..|+.+-
T Consensus 492 ~~y~~ALr~d 501 (564)
T KOG1174|consen 492 EYYYKALRQD 501 (564)
T ss_pred HHHHHHHhcC
Confidence 9999998753
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=138.70 Aligned_cols=269 Identities=13% Similarity=0.119 Sum_probs=200.3
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCc
Q 011858 79 LKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGAD 158 (476)
Q Consensus 79 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 158 (476)
+..|..+++.|+ ..+|.-.|+.|+. .+|..+++|..||.+....++-..|+..+++++++.+...
T Consensus 289 f~eG~~lm~nG~-L~~A~LafEAAVk-----------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--- 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGD-LSEAALAFEAAVK-----------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL--- 353 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh-----------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH---
Confidence 788999999996 9999999999988 4899999999999999999999999999999999986432
Q ss_pred hhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh--cCC-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 011858 159 HALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL--GET-DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEI 235 (476)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (476)
.++..||..|...|.-.+|+.++.+-+....... ... .... .....-......+..-.++|..+...
T Consensus 354 ------eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~----~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 354 ------EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED----FENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred ------HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc----ccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999998876521100 000 0000 00000001111122333344444333
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 236 HRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKAL 315 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 315 (476)
.+. . ....++..||.+|...|+|++|+++|+.|+. ..|.....|+.||-.+..-.+.++|+..|++|+
T Consensus 424 ~~~---~---~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 424 LPT---K---IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred CCC---C---CChhHHhhhHHHHhcchHHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 222 1 1234588999999999999999999999976 678888999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH-HHHHHHHHHHHHHHHcCCHHHH
Q 011858 316 TVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE-EIAGGLTEISAIYESVDEPEEA 392 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 392 (476)
++ .|...++.++||..+..+|.|.+|.++|-.|+.+.++.......+ ..-.+|..|=.++..+++.+-+
T Consensus 492 qL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 492 QL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 99 899999999999999999999999999999999987732111111 0123444444555555655533
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8e-16 Score=128.59 Aligned_cols=278 Identities=13% Similarity=0.089 Sum_probs=232.0
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
..-++....+..+|.+++..|+ +++|+..|+++..+ +|......-..|..+...|++++-..+-...+
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gd-n~~a~~~Fe~~~~~-----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGD-YFQAEDIFSSTLCA-----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcC-chHHHHHHHHHhhC-----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 4456778889999999999996 89999999998774 78888899999999999999998888777776
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHH
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEEL 228 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 228 (476)
.+..... .-|+.-+...+...+++.|+.+-+++++. ++....++...|.++...|+.++|+-.
T Consensus 294 ~~~~~ta---------~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 294 AKVKYTA---------SHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred hhhhcch---------hhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHH
Confidence 6643111 22677788889999999999999999987 667788899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHH-HHHH-HcCCHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIG-NIYL-SLCRFDE 306 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~ 306 (476)
|+.+..+.+. ...+|..+-.+|...|++.+|.-....++..+.. .+.++..+| .+++ .----++
T Consensus 357 FR~Aq~Lap~--------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~------sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 357 FRTAQMLAPY--------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN------SARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HHHHHhcchh--------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc------chhhhhhhcceeeccCchhHHH
Confidence 9999887744 3456899999999999999999988887765532 244455554 3332 2334588
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc
Q 011858 307 AVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV 386 (476)
Q Consensus 307 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (476)
|.+++++++.+ .|....+-..++.++...|.+..++.++++.+..+.. ...+..+|.++...
T Consensus 423 AKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----------~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 423 AKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD----------VNLHNHLGDIMRAQ 484 (564)
T ss_pred HHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc----------cHHHHHHHHHHHHh
Confidence 99999999998 8999999999999999999999999999999998754 45788899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcc
Q 011858 387 DEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 387 g~~~~A~~~~~~a~~~~~~~~ 407 (476)
+.+++|+++|..|+.+.|++.
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhHHHHHHHHHHHHhcCccch
Confidence 999999999999999988773
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.9e-16 Score=138.22 Aligned_cols=270 Identities=17% Similarity=0.129 Sum_probs=196.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
+..|..+++.|+..+|.-.|+.++...+ .| +++|..||.+....++-..|+..+++++++ +|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP-----~h----aeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~ 351 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP-----QH----AEAWQKLGITQAENENEQNAISALRRCLEL--------DPT 351 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh-----HH----HHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCc
Confidence 4678888999999999999999988754 22 367999999999999999999999999988 788
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
...++..||..|...|.-.+|..++.+-+...+.......... .-......-......+..-.++|-.+ ....+.
T Consensus 352 NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLea---a~~~~~- 426 (579)
T KOG1125|consen 352 NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEA---ARQLPT- 426 (579)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHH---HHhCCC-
Confidence 8889999999999999999999999988765432110000000 00000000000000111112222222 222332
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
...+.+...||.+|...|+|++|+++|+.||.. .|.....|+.||-.+....+.++|+..|.+|+++.+
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--- 495 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP--- 495 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC---
Confidence 234667889999999999999999999999998 899999999999999999999999999999999854
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc---hHHHHHHHHHHHHHHhhcHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS---TIAGIEARMGVMFYMVGRYEEA 433 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 433 (476)
.++++.++||..+..+|.|.+|.++|-.|+.+.+...+... .--.+|..|-.++...++.+-+
T Consensus 496 ------~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 496 ------GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ------CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 35899999999999999999999999999999988532211 1123444455555556665533
No 69
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.1e-14 Score=129.00 Aligned_cols=323 Identities=17% Similarity=0.106 Sum_probs=265.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHH
Q 011858 66 DASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALE 145 (476)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (476)
..+.+..+.-..|+.-+..+...+ .++-|+..|..+++.+. ..-.+|...+..--.-|..++-..+++
T Consensus 507 gigvEeed~~~tw~~da~~~~k~~-~~~carAVya~alqvfp-----------~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 507 GIGVEEEDRKSTWLDDAQSCEKRP-AIECARAVYAHALQVFP-----------CKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhccccchhHhHHhhhHHHHHhcc-hHHHHHHHHHHHHhhcc-----------chhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 446667777888999999999998 48999999999999763 334467777777778899999999999
Q ss_pred HhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHH
Q 011858 146 KAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKA 225 (476)
Q Consensus 146 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 225 (476)
+++...++.. ..|...+..+...|+...|...+.++++. +|..-+++..--.+.+...+++.|
T Consensus 575 kav~~~pkae---------~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 575 KAVEQCPKAE---------ILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHHhCCcch---------hHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHH
Confidence 9999887433 23777888899999999999999999987 556667788888888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 011858 226 EELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFD 305 (476)
Q Consensus 226 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 305 (476)
..+|.++.... ....+|+.-+.+...+++.++|+++++++++. .+.....|..+|+++..+++.+
T Consensus 638 R~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 638 RDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHH
Confidence 99999997633 23455777788899999999999999999874 3666788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
.|...|...++. -|.....|..|+.+-...|+..+|...++++.-..+ .....|.....+-.+
T Consensus 703 ~aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP---------k~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 703 MAREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP---------KNALLWLESIRMELR 765 (913)
T ss_pred HHHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC---------CcchhHHHHHHHHHH
Confidence 999999998887 677788999999999999999999999999876432 235667777788889
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCCc------------------------hHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 386 VDEPEEALKLLQRAMKLLEDKPGQQS------------------------TIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 386 ~g~~~~A~~~~~~a~~~~~~~~~~~~------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
.|+.+.|.....+|++-++.. |..+ .-..++..+|.+++...++++|.++|++++
T Consensus 766 ~gn~~~a~~lmakALQecp~s-g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSS-GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCcc-chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765 3111 012366788999999999999999999999
Q ss_pred HHHHHhccc
Q 011858 442 AKLRASGER 450 (476)
Q Consensus 442 ~~~~~~~~~ 450 (476)
.+....|+.
T Consensus 845 k~d~d~GD~ 853 (913)
T KOG0495|consen 845 KKDPDNGDA 853 (913)
T ss_pred ccCCccchH
Confidence 887777664
No 70
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.4e-14 Score=137.76 Aligned_cols=332 Identities=12% Similarity=-0.040 Sum_probs=224.0
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.+.....+..+|..+...| ++++|++.|+++++. +|....++..++..+...++.++|+..++++...
T Consensus 98 ~n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~-----------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 98 MNISSRGLASAARAYRNEK-RWDQALALWQSSLKK-----------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 3445556666688888888 499999999998885 4555677778889999999999999999998887
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc---------
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ--------- 221 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------- 221 (476)
.+.. ..+..++.++...++..+|+..++++++..+ ....++..+..++...|-
T Consensus 166 dp~~----------~~~l~layL~~~~~~~~~AL~~~ekll~~~P--------~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 166 DPTV----------QNYMTLSYLNRATDRNYDALQASSEAVRLAP--------TSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred Ccch----------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 6531 1134455566557777779999999887632 111111111111111111
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHHhcCCC--------------------
Q 011858 222 ---------------------------------------FDKAEELCKKTLEIHRAHSEP-------------------- 242 (476)
Q Consensus 222 ---------------------------------------~~~A~~~~~~al~~~~~~~~~-------------------- 242 (476)
.+.|+.-+++.+.........
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 111122222221111111100
Q ss_pred --------------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 011858 243 --------------ASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAV 308 (476)
Q Consensus 243 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 308 (476)
....-..+....|..|...++.++|+.+|++++.-.......+........|-..|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 000112345556778888888888888888764421111011222333456788899999999999
Q ss_pred HHHHHHHHHHH-hc--CC----CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q 011858 309 FSYQKALTVFK-SS--KG----DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA 381 (476)
Q Consensus 309 ~~~~~al~~~~-~~--~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 381 (476)
.++++..+... .. ++ ..+++.......++.++...|++.+|.+.+++.+...+. ...+...+|.
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~---------n~~l~~~~A~ 458 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA---------NQNLRIALAS 458 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHH
Confidence 99999887322 00 11 235667788999999999999999999999999888654 2678889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q 011858 382 IYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASG 448 (476)
Q Consensus 382 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 448 (476)
++...|.+.+|+..++.++.+.+... .+...+|.++..+|++++|.......++..++..
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~-------~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSL-------ILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccH-------HHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999888876664 7788999999999999999999988876655443
No 71
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.73 E-value=5.3e-15 Score=120.82 Aligned_cols=290 Identities=10% Similarity=0.042 Sum_probs=228.8
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
.++..+.-.+.+|..++..|++.+|+..|..|++..+.. ..+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 567777788999999999999999999999999987633 256899999999999999999999999998
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHHHHHhCCHHHHH
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA-------SLEESADRRLMALICEAKGDYEAAL 268 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~ 268 (476)
.|+...+....|.++.++|++++|+.-|+++++..+..+... .....+.+......+...|+...++
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 778888999999999999999999999999998665443221 0111223344455566788999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH
Q 011858 269 EHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE 348 (476)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 348 (476)
++....++ ..++.+..+...+.+|...|+...|+.-++.+-++ ..+....++.++.+++..|+.+.
T Consensus 176 ~~i~~llE------i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 176 EMITHLLE------IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHHHh------cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHH
Confidence 99988766 45677888899999999999999999999998887 55667889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCChHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 011858 349 SKSYCENALRIYARPVPGTTAEEIAGGLTEI---------SAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEAR 419 (476)
Q Consensus 349 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (476)
++...++++++.+. +..-...|-.+ +.-....++|.++++..++.++..+... .........
T Consensus 242 sL~~iRECLKldpd------HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~---~ir~~~~r~ 312 (504)
T KOG0624|consen 242 SLKEIRECLKLDPD------HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET---MIRYNGFRV 312 (504)
T ss_pred HHHHHHHHHccCcc------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc---ceeeeeehe
Confidence 99999999998543 32222222222 2334456788888888888776655432 223345566
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 420 MGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 420 l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
+..|+..-|++.+|+....+++++.+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCc
Confidence 78899999999999999999887543
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-15 Score=126.36 Aligned_cols=291 Identities=16% Similarity=0.106 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
+.-....|..++...+|.+|+..+..|++.++.. +..|.+.+.+++..|+|++|.-..++.+++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------- 112 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------ASYYSNRAATLMMLGRFEEALGDARQSVRL------- 112 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------hhhhchhHHHHHHHHhHhhcccchhhheec-------
Confidence 4445667888888999999999999999998643 145889999999999999999999988877
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH--------HHHHhcCCC--CchHHHHHHHHHHHHHHHhCCHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL--------EIHRAHSEP--ASLEESADRRLMALICEAKGDYEAALEH 270 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~ 270 (476)
.+.....+...+.++...++..+|...++..- ......... ..+....+...-+.++...|++++|...
T Consensus 113 -kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 113 -KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred -CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 44555677778888888888887776665211 111111111 1123344455668899999999999876
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHHHHcCCh
Q 011858 271 LVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG----DNHPSVASVFVRLADLYHRTGKL 346 (476)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~ 346 (476)
--..++ .+......+...|.++...++.+.|+.+|++++.+-..... ...+.....+..-|.-.++.|++
T Consensus 192 a~~ilk------ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 192 AIDILK------LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHh------cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 554433 34555677888899999999999999999999987322100 00233455666778888999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 011858 347 RESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM 426 (476)
Q Consensus 347 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (476)
.+|.+.|.+++.+.+. +....+..|.+.+.+...+|+..+|+.-...++.+.+... .++...|.++..
T Consensus 266 ~~A~E~Yteal~idP~-----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi-------kall~ra~c~l~ 333 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPS-----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI-------KALLRRANCHLA 333 (486)
T ss_pred hHHHHHHHHhhcCCcc-----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH-------HHHHHHHHHHHH
Confidence 9999999999999765 3345688899999999999999999999999999887764 899999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHH
Q 011858 427 VGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 427 ~g~~~~A~~~~~~a~~~~~~ 446 (476)
++++++|++.|+++++.-..
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 99999999999999986544
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=3.9e-14 Score=128.70 Aligned_cols=288 Identities=12% Similarity=0.041 Sum_probs=202.6
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
..|+....++..|..+..+| +++.|..++.++.+.. ++.. ..+....+.++...|++++|...+++.++
T Consensus 113 ~~~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~---------p~~~-l~~~~~~a~l~l~~~~~~~Al~~l~~l~~ 181 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELA---------GNDN-ILVEIARTRILLAQNELHAARHGVDKLLE 181 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC---------CcCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555667788899999999 5999999999987642 1111 12344569999999999999999999998
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhccHHHHHHH
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR-VGETCRYLAEAHVQAMQFDKAEEL 228 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 228 (476)
..+ +++ .++..++.++...|++++|+..+.+..+.. ..++. ..........-+...+..+++...
T Consensus 182 ~~P-----~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 182 MAP-----RHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred hCC-----CCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 865 232 458899999999999999999998888652 11222 222222222222344555555566
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAV 308 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 308 (476)
+.++.+..+... ......+..++..+...|++++|.+.++++++.. +++..... ...........++.+.++
T Consensus 248 L~~~~~~~p~~~----~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~-~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 248 LLNWWKNQPRHR----RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISL-PLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHHHHHCCHHH----hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchh-HHHHHhhhcCCCChHHHH
Confidence 666665443211 1124557788999999999999999999986632 22221110 122233334468888999
Q ss_pred HHHHHHHHHHHhcCCCCCchHH--HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc
Q 011858 309 FSYQKALTVFKSSKGDNHPSVA--SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV 386 (476)
Q Consensus 309 ~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (476)
+.++++++. +|... ..+..+|+++.+.|++++|.++|+++...... ++ ...+..+|.++...
T Consensus 320 ~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~----p~----~~~~~~La~ll~~~ 383 (409)
T TIGR00540 320 KLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ----LD----ANDLAMAADAFDQA 383 (409)
T ss_pred HHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC----CC----HHHHHHHHHHHHHc
Confidence 999998877 66666 88899999999999999999999954443221 11 23355899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 011858 387 DEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 387 g~~~~A~~~~~~a~~~~~~~ 406 (476)
|+.++|.+++++++...-..
T Consensus 384 g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 384 GDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 99999999999998776544
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=2e-14 Score=129.46 Aligned_cols=320 Identities=11% Similarity=0.030 Sum_probs=213.7
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
+|+.+.++..+|.++...|+.+++...+.++....+... .. .......+.++...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TE----RERAHVEALSAWIAGDLPKALALLEQLLDD--- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 477788999999999999999999999998888765332 11 133667889999999999999999999986
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
+|....++.. +..+...|++..+.....+++.. .....+.....+..+|.++...|++++|+..+++++.
T Consensus 73 -----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 73 -----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred -----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3443444444 66666666666666666665544 1222344566677889999999999999999999977
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 277 AMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
.. +....++..+|.++...|++++|+.++++++..... +.......+..++.++...|++++|+..++++
T Consensus 143 ~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 LN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred hC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 42 333667889999999999999999999999987321 12233456788999999999999999999998
Q ss_pred HHHHcCCCCCCChHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHhhcHHHH
Q 011858 357 LRIYARPVPGTTAEEIAGG--LTEISAIYESVDEPEEALKLLQRAMKLLEDK-PGQQSTIAGIEARMGVMFYMVGRYEEA 433 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A 433 (476)
+..... ....... ...+...+...|....+..+ +.+....... .+ ......-...+.++...|+.++|
T Consensus 213 ~~~~~~------~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 213 IAPSAE------SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred hccccC------CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHH
Confidence 654221 1111111 11223334445544433333 2222222211 12 11112223678888999999999
Q ss_pred HHHHHHHHHHHHHhccc-Cchhhhhhhccccccccccccccc
Q 011858 434 RSSFESAIAKLRASGER-KSAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 434 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
...++............ .......+....+.++...|++..
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 99999988776652100 011112344555666666666554
No 75
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.67 E-value=3.6e-14 Score=121.68 Aligned_cols=227 Identities=18% Similarity=0.152 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
..+..+...|..|...|++++|...|.++.+...+.++. ...+..+...+.+|... ++++|++++++++.++...+.
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 345677778888999999999999999999999886654 45677788888887666 999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 284 DNEVAAIDVSIGNIYLSL-CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
....+.++..+|.+|... |++++|+++|++|+++++.. +.......++..+|.++...|+|++|++.|++......+
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 99999999999999999886 334556788899999999999999999999999886543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH--hhcHHHHHHHHHH
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM--VGRYEEARSSFES 439 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 439 (476)
. ..........+...+.+++..||...|...+++.....+... . .....+...|-.++.. ...+++|+.-|.+
T Consensus 188 ~--~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~-~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 188 N--NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA-S-SREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp H--CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST-T-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred c--cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-C-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 2 222334556677888999999999999999998877766552 2 3334455555555543 2345555554443
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.4e-13 Score=122.81 Aligned_cols=269 Identities=14% Similarity=0.074 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.+...+......| +++.|..+++++.+.. ++.. .......+.++...|++++|+..+++..+..+.
T Consensus 120 ~~llaA~aA~~~g-~~~~A~~~l~~A~~~~---------~~~~-~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~--- 185 (398)
T PRK10747 120 NYLLAAEAAQQRG-DEARANQHLERAAELA---------DNDQ-LPVEITRVRIQLARNENHAARHGVDKLLEVAPR--- 185 (398)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHhcC---------Ccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence 3444456668888 5999999999998741 1121 223334589999999999999999999988753
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHH-----HHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVG-----ETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
++ .++..++.+|...|++++|+..+.+..+... .++... .++..+........ ....+.+
T Consensus 186 --~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~~~~~~~l~~~a~~~l~~~~~~~~----~~~~l~~ 250 (398)
T PRK10747 186 --HP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GDEEHRAMLEQQAWIGLMDQAMADQ----GSEGLKR 250 (398)
T ss_pred --CH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHH
Confidence 32 4588899999999999999999988876521 112211 12222222111222 2233333
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSY 311 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 311 (476)
..+..+... +....+...++..+...|+.++|.+.+++++. ...++..... .+ ....++.++++..+
T Consensus 251 ~w~~lp~~~----~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~----~~~~~~l~~l---~~--~l~~~~~~~al~~~ 317 (398)
T PRK10747 251 WWKNQSRKT----RHQVALQVAMAEHLIECDDHDTAQQIILDGLK----RQYDERLVLL---IP--RLKTNNPEQLEKVL 317 (398)
T ss_pred HHHhCCHHH----hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHH---Hh--hccCCChHHHHHHH
Confidence 332222111 12244577889999999999999999998865 2223322222 22 23459999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHH
Q 011858 312 QKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEE 391 (476)
Q Consensus 312 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 391 (476)
++.++. +|+....+..+|.++...+++++|.++|+++++..++ ...+..++.++..+|+.++
T Consensus 318 e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~----------~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 318 RQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD----------AYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHH
Confidence 998877 7888999999999999999999999999999997433 3456789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011858 392 ALKLLQRAMKLLED 405 (476)
Q Consensus 392 A~~~~~~a~~~~~~ 405 (476)
|.++|++++.+...
T Consensus 380 A~~~~~~~l~~~~~ 393 (398)
T PRK10747 380 AAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHhhhcc
Confidence 99999999887543
No 77
>PLN03077 Protein ECB2; Provisional
Probab=99.67 E-value=3e-14 Score=142.53 Aligned_cols=261 Identities=15% Similarity=0.045 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
++..+...|.+.|++++|...|++...- + ..+|..+...|...|++++|+..|++..+.. -.
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~--------d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~ 386 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK--------D----AVSWTAMISGYEKNGLPDKALETYALMEQDN------VS 386 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC--------C----eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CC
Confidence 4555566666666666666666654221 0 1235666666666777777766666654321 11
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
|.. .++..+-..+...|++++|.+.+..+.+..- . ....+++.+...|.+.|++++|.+.|++..+
T Consensus 387 Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~----~---~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------ 452 (857)
T PLN03077 387 PDE-ITIASVLSACACLGDLDVGVKLHELAERKGL----I---SYVVVANALIEMYSKCKCIDKALEVFHNIPE------ 452 (857)
T ss_pred CCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCC----C---cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC------
Confidence 111 2333334455556666666666555543211 0 1233466677778888888888887775311
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc-------------------------------hHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP-------------------------------SVAS 331 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~ 331 (476)
+ ...+|+.+...|...|++++|+..|++.+.. . .++.. ....
T Consensus 453 --~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 453 --K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT---L-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred --C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---C-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 1 1335677777788888888888888776531 1 01110 0112
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
++..|...|.+.|+.++|...|++. .. ...+|..+...|...|+.++|++.|++..+. +..+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~P 587 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNP 587 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC
Confidence 2334557777788888887777664 11 1457888888888888888888888887643 1111
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
. ..++..+-..+.+.|+.++|.++|+...
T Consensus 588 d-~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 588 D-EVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred C-cccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 1 1234445566777788888888887765
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.67 E-value=4.7e-13 Score=118.73 Aligned_cols=328 Identities=17% Similarity=0.177 Sum_probs=223.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHH
Q 011858 66 DASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALE 145 (476)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (476)
.+....|+.++.+...|..+...|+ -++|..+.+.++.. ++....+|+.+|.++....+|++|+.+|+
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~-----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRN-----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhcc-----------CcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 3445677777777888888888874 77777777777662 34445578888888888888888888888
Q ss_pred HhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHH
Q 011858 146 KAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKA 225 (476)
Q Consensus 146 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 225 (476)
.|+.+.+.+. .++..++.+..++++++.....-.+.++. .+..-..|...+..+...|++..|
T Consensus 100 nAl~~~~dN~---------qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 100 NALKIEKDNL---------QILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhcCCCcH---------HHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8887754221 45777888888888888777776666665 455566788899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 011858 226 EELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFD 305 (476)
Q Consensus 226 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 305 (476)
....+...+......+........+......+....|.+++|++.+..--. ...+........+.++..+++++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------QIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------HHHHHHHHhhhHHHHHHHHhhHH
Confidence 999988877765434433344455566667778888888888887764311 12233344556788899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHH-----------------------------------
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESK----------------------------------- 350 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~----------------------------------- 350 (476)
+|...|...+.. .|+....+..+-.++..-.+.-+++
T Consensus 237 eA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 237 EAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred hHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence 999988887765 3444333333322221000000000
Q ss_pred ----------------------------HHHHHHHHHHcCCCCC------------CChHHHHHHHHHHHHHHHHcCCHH
Q 011858 351 ----------------------------SYCENALRIYARPVPG------------TTAEEIAGGLTEISAIYESVDEPE 390 (476)
Q Consensus 351 ----------------------------~~~~~a~~~~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~ 390 (476)
.++++.+..+.....+ ..+.....+++.++.-+...|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 0112221111111111 134456778888999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 391 EALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 391 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.|..++..|+...+.. .+.+..-|+++...|++++|..+++++.++
T Consensus 389 ~A~~yId~AIdHTPTl-------iEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTL-------IELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHhccCchH-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 9999999998655544 588889999999999999999999988764
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.7e-15 Score=124.09 Aligned_cols=291 Identities=19% Similarity=0.139 Sum_probs=225.8
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
..+......+..++..- +|..|+..|..|++++ |+.+..|.+.+..++..|+|++|.-..++.+++.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k-~Y~nal~~yt~Ai~~~-----------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQK-TYGNALKNYTFAIDMC-----------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD 114 (486)
T ss_pred HHHHHHHhhcchHHHHh-hHHHHHHHHHHHHHhC-----------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence 45667778888888885 5999999999999974 55577899999999999999999999999998865
Q ss_pred ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHH--------HHHHHHhcC--CchhHHHHHHHHHHHHHHhccH
Q 011858 153 VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGL--------KIQIEALGE--TDPRVGETCRYLAEAHVQAMQF 222 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~ 222 (476)
... ..+...+.++...++..+|...++..- .....+... ..|....+-..-+.++...|++
T Consensus 115 ~~~---------k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 115 GFS---------KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred Ccc---------ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 322 236677777777777777776655211 111111011 1244455666778899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC------CChhHHHHHHHHHH
Q 011858 223 DKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG------QDNEVAAIDVSIGN 296 (476)
Q Consensus 223 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~~l~~ 296 (476)
++|...--..+++.... ..++...|.++...++.+.|+.+|++++.+-.... ..+.....+-.-|+
T Consensus 186 ~~a~~ea~~ilkld~~n--------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDATN--------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhHHHHHHHHHhcccch--------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 99998888777765443 33467779999999999999999999987543222 12344556677899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGL 376 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (476)
-.++.|++.+|.+.|.++|.+-.. +....+.+|.+.+.+..++|+..+|+...+.++.+. +..+.++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---------~syikal 324 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---------SSYIKAL 324 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---------HHHHHHH
Confidence 999999999999999999998332 244568889999999999999999999999999984 3468899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
...|.++..+++|++|++.|+++++....
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999987655
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.65 E-value=9.2e-13 Score=119.95 Aligned_cols=305 Identities=17% Similarity=0.126 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
.+++.....++...|++++|++++++...... + ...++...|.++..+|++++|...|+..++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~-----D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQIL-----D----KLAVLEKRAELLLKLGRKEEAEKIYRELIDR------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCC-----C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 45667777888888999999988877554432 1 1245778888999999999999999888876
Q ss_pred CchhHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHhcCCCCch------------------------HHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAM-----QFDKAEELCKKTLEIHRAHSEPASL------------------------EESADR 251 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~------------------------~~~~~~ 251 (476)
+|.....+..+..+..... +.+.-...|++....++....+... .+....
T Consensus 68 -NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF 146 (517)
T PF12569_consen 68 -NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLF 146 (517)
T ss_pred -CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHH
Confidence 5566666666666653222 3445555555554444332111000 001122
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 252 RLMALICEAKGDYEAALEHLVLASMAMIAN-----------GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320 (476)
Q Consensus 252 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 320 (476)
.++-.+|....+..-....+..-....... ..+....++++.++..|...|++++|+++++++++.
T Consensus 147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--- 223 (517)
T PF12569_consen 147 SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--- 223 (517)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence 233333332222211122222211111111 112334678899999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 321 SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
.|.....+...|.++...|++.+|.+.++.+..+... --.+....+..+.+.|+.++|.+.+....
T Consensus 224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA---------DRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---------hHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 8899999999999999999999999999999887433 12344556788889999999998776553
Q ss_pred HHHHhccCCCc--hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhh
Q 011858 401 KLLEDKPGQQS--TIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCV 459 (476)
Q Consensus 401 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 459 (476)
....+...+.. .-.+.....|.+|.+.|++..|+..|....+.+....+....+...++
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~ 350 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCL 350 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 32211101111 223444567999999999999999999999999998765444433333
No 81
>PLN03077 Protein ECB2; Provisional
Probab=99.64 E-value=9.8e-14 Score=138.92 Aligned_cols=297 Identities=12% Similarity=-0.029 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.+..+...+...| ++++|+..++...+. +..+ ...++..+...+...+.++.|...+..++......
T Consensus 53 ~~n~~i~~l~~~g-~~~~A~~l~~~m~~~---------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 119 (857)
T PLN03077 53 DSNSQLRALCSHG-QLEQALKLLESMQEL---------RVPV-DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL-- 119 (857)
T ss_pred hHHHHHHHHHhCC-CHHHHHHHHHHHHhc---------CCCC-ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--
Confidence 4556666777787 488888777766542 1111 12233444445555566666666666555443210
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
+ ......+-..|...|+.+.|...|++..+ ....+|..+...|.+.|++++|+..|++.....
T Consensus 120 --~----~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 120 --G----VRLGNAMLSMFVRFGELVHAWYVFGKMPE-----------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred --C----chHHHHHHHHHHhCCChHHHHHHHhcCCC-----------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 0 01234444455555555555555544321 112345555555555555555555555543210
Q ss_pred -------------------------------HhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCh
Q 011858 237 -------------------------------RAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDN 285 (476)
Q Consensus 237 -------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 285 (476)
...+-. ....+++.+...|.+.|++++|...|++.. .
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------~- 250 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE---LDVDVVNALITMYVKCGDVVSARLVFDRMP--------R- 250 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC---cccchHhHHHHHHhcCCCHHHHHHHHhcCC--------C-
Confidence 000000 012235667778888888888888887641 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP 365 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 365 (476)
....+|+.+...|.+.|++++|+..|.+.... +-.|+ ..++..+...+...|+.+.|.+.+..+.+..-.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~------g~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--- 320 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMREL------SVDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFA--- 320 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc---
Confidence 12346777788888888888888888876653 11222 334445555555566666666655555443111
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 366 GTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
+ ...++..+...|.+.|++++|.+.|++... .+ ...|..+...|.+.|++++|++.|++.
T Consensus 321 ----~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d-------~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 321 ----V-DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KD-------AVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred ----c-chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC-------eeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1 134555555666666666666665554321 00 124455555566666666666655544
No 82
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.63 E-value=2.7e-14 Score=122.46 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
+...|..|...+++++|.+.|.++.......++....+..+...+.+|... ++++|+.+|+++++++... ++....+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA 114 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHH
Confidence 444488888899999999999999999988888888888999988888776 9999999999999999887 4556668
Q ss_pred HHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 331 SVFVRLADLYHRT-GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 331 ~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
.++..+|.+|... |++++|+++|++|++++... ........++..+|.++...|+|++|++.|++......+....
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999 99999999999999999874 3566678889999999999999999999999988765444223
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.......+...+.+++..|++..|...+++........
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 34455667788889999999999999988877554333
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=1.1e-12 Score=116.59 Aligned_cols=315 Identities=13% Similarity=0.044 Sum_probs=212.7
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
+-.|..-..|...+..--..| ..++-..++++|+.... .....|...+..+...|+...|...+.+++
T Consensus 544 qvfp~k~slWlra~~~ek~hg-t~Esl~Allqkav~~~p-----------kae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHG-TRESLEALLQKAVEQCP-----------KAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred hhccchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCC-----------cchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 344555556666666555666 36666777777776532 223356666677777788888888887777
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHH
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEEL 228 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 228 (476)
+..+... ++++.--.+.+...+++.|..+|.++... .....+++.-+.+...+++.++|+++
T Consensus 612 ~~~pnse---------eiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 612 EANPNSE---------EIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhCCCcH---------HHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 7764321 33555556666777777777777777653 12335566667777777777777777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAV 308 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 308 (476)
++++++.++.. ...|..+|.++..+++.+.|.+.|...++ .-|...-.|..++.+-...|..-.|.
T Consensus 674 lEe~lk~fp~f--------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k------~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 674 LEEALKSFPDF--------HKLWLMLGQIEEQMENIEMAREAYLQGTK------KCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHHHHhCCch--------HHHHHHHhHHHHHHHHHHHHHHHHHhccc------cCCCCchHHHHHHHHHHHhcchhhHH
Confidence 77777776442 23367777777777777777777776544 23444556677777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC-----------CCCh--------
Q 011858 309 FSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP-----------GTTA-------- 369 (476)
Q Consensus 309 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------~~~~-------- 369 (476)
..++++.-. +|.....|.....+-.+.|+.+.|...+.+|++-++.... +...
T Consensus 740 ~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 740 SILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred HHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 777777654 6666677777777777777777777777777766554310 0000
Q ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 370 --EEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 370 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.....++..+|..+....++++|.++|.+++...++.. .++..+-..+...|.-++-.+.+.++..
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G-------D~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG-------DAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc-------hHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 00134677889999999999999999999999988873 6666677778888877777777766654
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=9.7e-12 Score=113.37 Aligned_cols=301 Identities=18% Similarity=0.121 Sum_probs=201.6
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
..+.++-.+.++...|+ +++|+++++..... ..+...++...|.++..+|++++|...|...++..+.
T Consensus 3 ~SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~-----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd 70 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGD-YEEALEHLEKNEKQ-----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD 70 (517)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHhhhhh-----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 35677888889999995 99999988765442 4566778899999999999999999999999998763
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcC-----ChhhHHHHHHHHHHHHHHHh-----------cCC-------------chh
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLG-----QVDRSIGCYEEGLKIQIEAL-----------GET-------------DPR 204 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~-----------~~~-------------~~~ 204 (476)
.. ..+..+..+..... +.+.-..+|++....+++.. |+. ...
T Consensus 71 n~---------~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 71 NY---------DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred cH---------HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 22 23445555542222 23444455554433322100 000 000
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC---------CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE---------PASLEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
+..+..++-.+|....+..-....+...+......+. .......++++.++..|...|++++|++++++++
T Consensus 142 vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 142 VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1112223333333222222222222322222211111 1122346788999999999999999999999997
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 276 MAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
. ..|.....|...|.++-..|++.+|.+.++.|..+ +...-.+-...+..+.+.|+.++|...+..
T Consensus 222 ~------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 222 E------HTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred h------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7 56788899999999999999999999999999887 556666777788889999999999887765
Q ss_pred HHHHHcCCCCCCChH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 356 ALRIYARPVPGTTAE--EIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 356 a~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
..+-... +..+-. ...+.....|.+|.+.|++..|++.|..+.+.+.....+..
T Consensus 288 Ftr~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQf 343 (517)
T PF12569_consen 288 FTREDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQF 343 (517)
T ss_pred hcCCCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 5332211 111222 23444556799999999999999999999999988765544
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.60 E-value=3.6e-12 Score=115.54 Aligned_cols=290 Identities=15% Similarity=0.092 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 75 GPFLLKLARDTIASG---EGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
+..++.+|.+|-.+- ....+-..+..++++.+++... .++....+.+.++.-|..+++.+.|..+.++++++.
T Consensus 433 ~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~----~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 433 PRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ----FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445555665553321 1234445555666666666544 345555789999999999999999999999999985
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc----------
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ---------- 221 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------- 221 (476)
.. ++ +.+|..++.++...+++.+|+.....+++-....++. ......+-...++
T Consensus 509 ~~----~~----~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--------~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 509 RG----DS----AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--------MDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred CC----cc----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--------chhhhhhhhhcccHHHHHHHHHH
Confidence 42 22 2569999999999999999999999999876542110 1111111111233
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHhcCC----------------C--CchHHHHH
Q 011858 222 ---------------------------------FDKAEELCKKTLEIHRAHSE----------------P--ASLEESAD 250 (476)
Q Consensus 222 ---------------------------------~~~A~~~~~~al~~~~~~~~----------------~--~~~~~~~~ 250 (476)
..+|++.+.++..+...... + .+......
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 33444444444433321100 0 01112345
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
|...+..+...++.++|..++.++.. ..+..+..|+..|.++...|++.+|...|..++.+ +|+..
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv 718 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHV 718 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCc
Confidence 66778888899999999999888755 44777889999999999999999999999999999 88889
Q ss_pred HHHHHHHHHHHHcCChhHHHH--HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 331 SVFVRLADLYHRTGKLRESKS--YCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
.+...+|.++.+.|+..-|.. ++..++++.+. ...+|+.+|.++..+|+.++|.++|..++++.+..+
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999888877 99999998543 368999999999999999999999999999988775
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=6.4e-13 Score=111.85 Aligned_cols=182 Identities=11% Similarity=0.031 Sum_probs=145.5
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
.......++.+|..+...|++++|+..+++++...+.. +....+++.+|.++...|++++|+..++++++. .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---~ 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---H 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---C
Confidence 44567789999999999999999999999998876532 234456889999999999999999999998754 3
Q ss_pred CCChhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhcCCCCCchHHH--------------HHHHHHHH
Q 011858 282 GQDNEVAAIDVSIGNIYLSL--------CRFDEAVFSYQKALTVFKSSKGDNHPSVAS--------------VFVRLADL 339 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~la~~ 339 (476)
++.+....+++.+|.++... |++++|+..+++++..... +..... ....+|.+
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-----SEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556788899999876 8899999999999887321 111111 12467899
Q ss_pred HHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 340 YHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
|...|++.+|+..++++++..+. .+....++..+|.++...|++++|..+++.....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPD------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999998643 2455789999999999999999999988876543
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=4.3e-13 Score=112.88 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=143.6
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
...++.+|..+...|++++|+..+++++...+ +++....+++.+|.++...|++++|+..++++++..++...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-- 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-----FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD-- 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc--
Confidence 35689999999999999999999999988732 24556678999999999999999999999999988775443
Q ss_pred chHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHcCCChhHH--------------HHHHHHHHHHHHc
Q 011858 244 SLEESADRRLMALICEAK--------GDYEAALEHLVLASMAMIANGQDNEVA--------------AIDVSIGNIYLSL 301 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~ 301 (476)
...+++.+|.++... |++++|++.+++++... ++..... .....+|.+|...
T Consensus 106 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 106 ---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred ---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 234578888888876 88999999999886542 2222111 1224688999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 302 CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 302 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
|++.+|+..++++++.+ ++.+....++..+|.++...|++++|..+++.....
T Consensus 180 g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999874 334667899999999999999999999988776553
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=3.8e-11 Score=106.93 Aligned_cols=345 Identities=12% Similarity=0.091 Sum_probs=227.3
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
...++.....|..+|..+...- .|++|+.+|+.|+.+ .+++..++..++....++++++-....-.+.
T Consensus 68 lr~d~~S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~-----------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 68 LRNDLKSHVCWHVLGLLQRSDK-KYDEAIKCYRNALKI-----------EKDNLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred hccCcccchhHHHHHHHHhhhh-hHHHHHHHHHHHHhc-----------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456667778889998888775 599999999999996 5677789999999999999999999888888
Q ss_pred hhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC---------------------------
Q 011858 148 ISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE--------------------------- 200 (476)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------- 200 (476)
+++.+... ..|...+..+...|++..|....+............
T Consensus 136 Lql~~~~r---------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 136 LQLRPSQR---------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHhhhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88765221 347888888999999999888776665543210000
Q ss_pred ----Cchh---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HH--H----HHHHH------
Q 011858 201 ----TDPR---VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRR-LM--A----LICEA------ 260 (476)
Q Consensus 201 ----~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~l--a----~~~~~------ 260 (476)
..+. ........+.++..++++++|...+...+...+++.... .....++. .. + .+|..
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy-~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY-EGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 0011 111233456778888888888888888887766544321 00111110 00 0 00000
Q ss_pred -------------hC-CHHHHHH-----------------------------HHHHHHHHHH-Hc--------------C
Q 011858 261 -------------KG-DYEAALE-----------------------------HLVLASMAMI-AN--------------G 282 (476)
Q Consensus 261 -------------~g-~~~~A~~-----------------------------~~~~a~~~~~-~~--------------~ 282 (476)
.| ++.+... .+++.+..+. .. .
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 00 0000000 1111111000 00 0
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+....+.++.++.-+...|+++.|..+++.|++. .|.....+..-|+++...|++++|..+++++.++...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 22345667788899999999999999999999876 8899999999999999999999999999999887422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHH--HHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIA--GIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
+ ..+-..-|....+.++.++|.+.+.+.-+......++-..+- +....-|..|.++|++..|++-|...
T Consensus 438 --------D-R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 438 --------D-RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred --------h-HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1 112224677778889999998877654433211111112222 22334589999999999999999988
Q ss_pred HHHHHHhcccC
Q 011858 441 IAKLRASGERK 451 (476)
Q Consensus 441 ~~~~~~~~~~~ 451 (476)
-..+.+..+..
T Consensus 509 ~k~~~~~~~dq 519 (700)
T KOG1156|consen 509 EKHYKTWSEDQ 519 (700)
T ss_pred HHHHHHHhhhh
Confidence 88887775543
No 89
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.2e-10 Score=100.21 Aligned_cols=362 Identities=17% Similarity=0.097 Sum_probs=252.5
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhhcc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLG-KFEEAVPALEKAISVPD 152 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~ 152 (476)
.+...+.+|..++.-.+|++.|..++++|..+.+.... .-.....+...++.+|.... .+..+...+++++++..
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~----fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS----FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc----HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 46678899999888878999999999999999877733 11345667888999998887 88999999999999875
Q ss_pred ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHH------------------------------------HHHH
Q 011858 153 VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLK------------------------------------IQIE 196 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------------------~~~~ 196 (476)
... ...-..++.++.++....++..|++.+.-..+ ....
T Consensus 121 ~~p-----~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~q 195 (629)
T KOG2300|consen 121 SVP-----YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQ 195 (629)
T ss_pred CCc-----hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 322 22234577888888888888877765421100 0000
Q ss_pred ------------------------------------------------------------HhcCCchhHH--------HH
Q 011858 197 ------------------------------------------------------------ALGETDPRVG--------ET 208 (476)
Q Consensus 197 ------------------------------------------------------------~~~~~~~~~~--------~~ 208 (476)
++|.+.+... .+
T Consensus 196 i~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqica 275 (629)
T KOG2300|consen 196 IWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICA 275 (629)
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHh
Confidence 0011111100 00
Q ss_pred HHHHHH--HHHHhccHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 011858 209 CRYLAE--AHVQAMQFDKAEELCKKTLEIHRAHSEPAS------LEESADRRLMALICEAKGDYEAALEHLVLASMAMIA 280 (476)
Q Consensus 209 ~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 280 (476)
+..+-. --...|-+++|.++-++++...++....+. ......+-.+..+-.-.|++.+|++....+.+.+..
T Consensus 276 LV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r 355 (629)
T KOG2300|consen 276 LVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTR 355 (629)
T ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 001100 111246688888888888877666554431 112234455666777899999999999988888876
Q ss_pred cCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 281 NGQ----DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 281 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
.+. ....+.++..+|......+.++.|...|..|.+...+. ...+.+-.++|.+|.+.|+-+.-.+ +
T Consensus 356 ~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~----~ 426 (629)
T KOG2300|consen 356 FPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYK----A 426 (629)
T ss_pred CCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHH----H
Confidence 655 23456777888988899999999999999999886543 3356777889999999887654333 3
Q ss_pred HHHHcCCC--CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHH
Q 011858 357 LRIYARPV--PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEAR 434 (476)
Q Consensus 357 ~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 434 (476)
++.....+ .-........+++..|...+.++++.+|...+.+.+++.... +.....+..+..||.+....|+..++.
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae-d~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE-DLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33322110 011233456678888888999999999999999999998443 455556677888999999999999999
Q ss_pred HHHHHHHHHHHHhcccCchh
Q 011858 435 SSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 435 ~~~~~a~~~~~~~~~~~~~~ 454 (476)
+...-++++..++.+.....
T Consensus 506 nmvrpamqlAkKi~Di~vqL 525 (629)
T KOG2300|consen 506 NMVRPAMQLAKKIPDIPVQL 525 (629)
T ss_pred hccchHHHHHhcCCCchHHH
Confidence 99999999999998764443
No 90
>PLN02789 farnesyltranstransferase
Probab=99.55 E-value=5.4e-12 Score=108.59 Aligned_cols=213 Identities=8% Similarity=0.019 Sum_probs=167.2
Q ss_pred hHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCCCchHH
Q 011858 169 QLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM-QFDKAEELCKKTLEIHRAHSEPASLEE 247 (476)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~ 247 (476)
.+-.++...+++++|+..+.+++++ +|....++...+.++..+| ++++++..++++++..++..
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------- 106 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------- 106 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-------
Confidence 3334455677899999999999988 7788889999999999998 68999999999998765432
Q ss_pred HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 248 SADRRLMALICEAKGDY--EAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
.+|...+.++...|+. ++++.++++++. .++....++...+.++...|+++++++++.++++.
T Consensus 107 -qaW~~R~~~l~~l~~~~~~~el~~~~kal~------~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-------- 171 (320)
T PLN02789 107 -QIWHHRRWLAEKLGPDAANKELEFTRKILS------LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-------- 171 (320)
T ss_pred -HHhHHHHHHHHHcCchhhHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------
Confidence 3477888888888874 677888887765 45666788999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHHHc---CCh----hHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRT---GKL----RESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALK 394 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 394 (476)
++....+|...+.+.... |.+ ++++.+..+++.+.+. ...++..++.++.. .++..+|+.
T Consensus 172 d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~---------N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 172 DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR---------NESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC---------CcCHHHHHHHHHhcCCcccccchhHHH
Confidence 778888999999888766 333 4788888899988554 25677888888877 355677888
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh
Q 011858 395 LLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV 427 (476)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (476)
.+.+++...+.. ..++..|+.+|...
T Consensus 243 ~~~~~~~~~~~s-------~~al~~l~d~~~~~ 268 (320)
T PLN02789 243 VCLEVLSKDSNH-------VFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhhcccCCc-------HHHHHHHHHHHHhh
Confidence 888876643333 25677788888753
No 91
>PLN02789 farnesyltranstransferase
Probab=99.53 E-value=5.2e-12 Score=108.70 Aligned_cols=205 Identities=13% Similarity=0.023 Sum_probs=160.5
Q ss_pred hcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcC-ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 011858 133 SLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG-QVDRSIGCYEEGLKIQIEALGETDPRVGETCRY 211 (476)
Q Consensus 133 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 211 (476)
..+++++|+..+.+++.+.+... .++...+.++...| ++++++.++.+++.. +|....++..
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~y---------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~ 111 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNY---------TVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH 111 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhH---------HHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence 45678899999999999876332 45888899999988 679999999999986 6677778999
Q ss_pred HHHHHHHhccH--HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHH
Q 011858 212 LAEAHVQAMQF--DKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAA 289 (476)
Q Consensus 212 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 289 (476)
.+.++...|+. ++++.++++++++.++ ...+|...+.++...|+++++++++.++++. ++....
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk--------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~s 177 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK--------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNS 177 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchh
Confidence 99888888874 6788888898877644 3455888999999999999999999998763 344466
Q ss_pred HHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHH
Q 011858 290 IDVSIGNIYLSL---CRF----DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR----TGKLRESKSYCENALR 358 (476)
Q Consensus 290 ~~~~l~~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~ 358 (476)
+++..+.+.... |.+ ++++.+..+++.+ .|....+|..++.++.. .++..+|...+.+++.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 788888887665 333 5788888899888 78888999999999987 4556778888888766
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
... ....++..++.+|..
T Consensus 250 ~~~---------~s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KDS---------NHVFALSDLLDLLCE 267 (320)
T ss_pred ccC---------CcHHHHHHHHHHHHh
Confidence 321 235677788888875
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.4e-10 Score=97.52 Aligned_cols=306 Identities=16% Similarity=0.049 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcccc
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVT 154 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 154 (476)
+.....-|..-+..|+ |.+|.....++-+. .+.-..++..-+..-...|+++.+-.++.++-+...+
T Consensus 84 a~~~~~egl~~l~eG~-~~qAEkl~~rnae~-----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~- 150 (400)
T COG3071 84 ARKALNEGLLKLFEGD-FQQAEKLLRRNAEH-----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD- 150 (400)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHhhhc-----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-
Confidence 4445666777777884 88888877775542 2333446777788899999999999999999887431
Q ss_pred CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 155 RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
+. ..+....+.+...+|+++.|.....++++. .|....++.....+|...|++.+...++.+..+
T Consensus 151 ---~~----l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 151 ---DT----LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred ---ch----HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 234788999999999999999999999887 566777888899999999999999888776643
Q ss_pred HHHhcCCCCchHHHHHHHHHHH--HHHHhCCHHHHHH---HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMAL--ICEAKGDYEAALE---HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVF 309 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~---~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 309 (476)
-. -..+ .. ..-+-+.+. ++....+-..+.. +++. .-++...++ .+...++.-+...|+.++|.+
T Consensus 216 a~-~l~~---~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~---~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 216 AG-LLSD---EE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKN---QPRKLRNDP---ELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred cc-CCCh---HH-HHHHHHHHHHHHHHHHhccccchHHHHHHHh---ccHHhhcCh---hHHHHHHHHHHHcCChHHHHH
Confidence 21 1111 11 111122221 1222222222222 2221 112222333 344566788899999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCH
Q 011858 310 SYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP 389 (476)
Q Consensus 310 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 389 (476)
..+++++. .-++. ....++ ...-++...=++..++.++..+. ....+..+|.++.+.+.|
T Consensus 285 ~i~~~Lk~------~~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~---------~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 285 IIEDALKR------QWDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQHPE---------DPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHh------ccChh---HHHHHh--hcCCCCchHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHhhHH
Confidence 99999886 22222 222222 23567777777777777776432 247899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 390 EEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 390 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.+|..+|+.+++..++. ..+..+|.++.++|+..+|.+.+++++.+....
T Consensus 345 ~kA~~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 345 GKASEALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 99999999998876655 567789999999999999999999999655443
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.2e-10 Score=99.38 Aligned_cols=346 Identities=17% Similarity=0.108 Sum_probs=217.3
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
...|+...++.....+....++ |++|+...+.-.. ........+..+.|.++.+..++|+..++-+-
T Consensus 40 ~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~------------~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 40 SIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGA------------LLVINSFFFEKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred hcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcch------------hhhcchhhHHHHHHHHHcccHHHHHHHHhccc
Confidence 3446666666666666776663 6665533322111 11111122678889999999999999888221
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH-----------------------HhcCCchhH
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE-----------------------ALGETDPRV 205 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------------------~~~~~~~~~ 205 (476)
.. +. .++...|.+++.+|+|++|+..|+..++.... .........
T Consensus 107 ~~--------~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 107 RL--------DD----KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred cc--------ch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 11 11 24778899999999999999999887442110 001112224
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC-------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 206 GETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP-------ASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
.+.+++.+.++...|+|.+|++.++++++++.+.... .......+...++.++..+|+.++|...|...+...
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 5678999999999999999999999998887653321 112345667889999999999999999887765411
Q ss_pred HHcCCChh---------------------------------------------HHHHHHHHHHHHHHcCCHHHHHH----
Q 011858 279 IANGQDNE---------------------------------------------VAAIDVSIGNIYLSLCRFDEAVF---- 309 (476)
Q Consensus 279 ~~~~~~~~---------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~---- 309 (476)
..+.+. ...++.+.+.+.+..+.-+.+.+
T Consensus 255 --~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 255 --PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred --CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 001000 11122333333333332222211
Q ss_pred -----------------------HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 310 -----------------------SYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 310 -----------------------~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.+.++.+...............+...++.+...+|+++.|++.+...+.......+
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~- 411 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL- 411 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-
Confidence 12222233332222223334678888899999999999999999855532221110
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
+......+-..+-..+...++.+.|...+.+++............+...+...+..-.+.|+-++|...+++.++.
T Consensus 412 -~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 412 -EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred -hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 0001123334455567778888889999999999888764445555566777888888889999999999998864
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.51 E-value=7.2e-12 Score=116.54 Aligned_cols=329 Identities=17% Similarity=0.120 Sum_probs=220.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC--------------
Q 011858 91 GPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG-------------- 156 (476)
Q Consensus 91 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------- 156 (476)
+...|+..+-+++++ ++..+.++..+|.+|...-+...|..+|++|.++......
T Consensus 473 ~~~~al~ali~alrl-----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 473 NSALALHALIRALRL-----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred hHHHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 456677777777664 4555667777777777776777777777777666521100
Q ss_pred -------------CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHH
Q 011858 157 -------------ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFD 223 (476)
Q Consensus 157 -------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 223 (476)
........+.|..+|..|...+++..|+..|+.++.. +|....++..+|.+|...|++.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCcee
Confidence 0000111234566788888889999999999999876 7788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHcC
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA-NGQDNEVAAIDVSIGNIYLSLC 302 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 302 (476)
.|++.|.++..+.+. .....+..+.+....|+|.+|+..+...+..... .......+.++..++..+...|
T Consensus 614 ~AlKvF~kAs~LrP~--------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPL--------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred hHHHhhhhhHhcCcH--------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999877644 2334667888999999999999999887665542 2234466778888888888899
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc-----------------------CCh---h---HHHHHH
Q 011858 303 RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT-----------------------GKL---R---ESKSYC 353 (476)
Q Consensus 303 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------------------g~~---~---~A~~~~ 353 (476)
-+.+|..+++++++.+.-............|..+|....-. +.. + -+.+++
T Consensus 686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~ 765 (1238)
T KOG1127|consen 686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG 765 (1238)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence 99999999999988765543222122223333333322111 111 0 122222
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYES--------VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY 425 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (476)
-..+.+. .....|+++|.-|.. +.+...|+.++.+++++..++. ..+..||.+ .
T Consensus 766 ~~hlsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~-------~~WnaLGVl-s 827 (1238)
T KOG1127|consen 766 IAHLSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE-------GLWNALGVL-S 827 (1238)
T ss_pred hHHHHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH-------HHHHHHHHh-h
Confidence 2222221 124567777777665 2344589999999999988775 677777777 5
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccccccc
Q 011858 426 MVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQD 472 (476)
Q Consensus 426 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 472 (476)
..|++.-|..+|-+++...+... .++.++|..+....|.
T Consensus 828 g~gnva~aQHCfIks~~sep~~~--------~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSEPTCH--------CQWLNLGVLVLENQDF 866 (1238)
T ss_pred ccchhhhhhhhhhhhhhccccch--------hheeccceeEEecccH
Confidence 56889999999888876433321 3456777777665554
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=3.4e-11 Score=99.45 Aligned_cols=304 Identities=16% Similarity=0.115 Sum_probs=190.5
Q ss_pred CcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhH
Q 011858 91 GPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQL 170 (476)
Q Consensus 91 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 170 (476)
+|..|+.+++-.+.. +..+....-.++|.+++..|+|++|+..|.-+..... .. .+...++
T Consensus 37 DytGAislLefk~~~----------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~----~~-----~el~vnL 97 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNL----------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD----AP-----AELGVNL 97 (557)
T ss_pred cchhHHHHHHHhhcc----------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC----CC-----cccchhH
Confidence 599999998877653 2333445677899999999999999999998766321 11 1457899
Q ss_pred HHHHHHcCChhhHHHHHHHHHH----------HHHHHhcCC---------chhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 171 GDTCSMLGQVDRSIGCYEEGLK----------IQIEALGET---------DPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
+.+++..|.|.+|...-.++-+ +..+. ++. -.+..+-...++.+++..-.|++|++.|.+
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887665422 11111 110 011223345677788888889999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---------------HH---------------Hc
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA---------------MI---------------AN 281 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---------------~~---------------~~ 281 (476)
.+.-.+. .......++.||.++.-++-+.+.+.--+.. ++ ..
T Consensus 177 vL~dn~e--------y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 177 VLQDNPE--------YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHhcChh--------hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 8765433 2233456677888877777666554322110 00 00
Q ss_pred CC------------------------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 282 GQ------------------------------DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 282 ~~------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
.+ -..+..+..++...|..+++.++|....+ .. .|..+.
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K-------dl----~PttP~ 317 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK-------DL----DPTTPY 317 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh-------hc----CCCChH
Confidence 00 00123445666667777777777655443 22 666777
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
-+...|.++...|+-....++++-|.+.+.-.+.....-+.+.....++.+++...++++-+.++......+.++.
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD---- 393 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD---- 393 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----
Confidence 7777888888888766666666555554433221111122233344566666666777777777776666555543
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
...++++.++...|+|.+|.+.|-+.
T Consensus 394 ---~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 394 ---DFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred ---hhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 45567777788888888877776554
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.48 E-value=9.7e-11 Score=109.26 Aligned_cols=234 Identities=17% Similarity=0.159 Sum_probs=192.0
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 011858 177 LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL 256 (476)
Q Consensus 177 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 256 (476)
+.+...|+..|-+++.+ ++..+.++..||.+|...-+...|.++|++|.++.... +.+.-.++.
T Consensus 471 rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd--------aeaaaa~ad 534 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD--------AEAAAASAD 534 (1238)
T ss_pred hhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--------hhhHHHHHH
Confidence 34577788888888877 77889999999999999999999999999999876443 334667799
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011858 257 ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL 336 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 336 (476)
.|....+++.|......+-+.. ........+..+|..|...+++..|+..|+.++.. +|....+|..+
T Consensus 535 tyae~~~we~a~~I~l~~~qka----~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gL 602 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKA----PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGL 602 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhc----hHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHH
Confidence 9999999999988854332211 11222344556899999999999999999999998 89999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHH
Q 011858 337 ADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGI 416 (476)
Q Consensus 337 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 416 (476)
|.+|...|++..|++.|.++..+.+ ......+..+.+....|+|.+|+..+...+............++.+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~LrP---------~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLLRP---------LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhcCc---------HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999988743 3355677788899999999999999999988776654455667788
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 417 EARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
+..++..+...|-+.+|..+++++++.+...
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999876544
No 97
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=7.9e-10 Score=95.27 Aligned_cols=375 Identities=15% Similarity=0.021 Sum_probs=241.1
Q ss_pred chHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH-HhcCChhHHHHHHHHhhhh
Q 011858 74 LGPFLLKLARDTIASG--EGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIY-CSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~ 150 (476)
.+..++.+|..+...| + ..+++.+++.....- -...-.+.+...+|.++ ....+++.|...++++..+
T Consensus 6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~~--------is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i 76 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQFQ--------ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLI 76 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhccC--------ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4677889999888887 3 556666665544321 02234566777788765 5678999999999999988
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcC-ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLG-QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELC 229 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (476)
........ ...+.+...++.+|.... .+..+...+++++++.+.. .-.....++.+++++.-..++..|++.+
T Consensus 77 ~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 77 SKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 76544332 344677899999999887 8999999999999986542 2222334445555555544444444432
Q ss_pred H----------------------------------------HHHHHHHhcCC-CC-------------------------
Q 011858 230 K----------------------------------------KTLEIHRAHSE-PA------------------------- 243 (476)
Q Consensus 230 ~----------------------------------------~al~~~~~~~~-~~------------------------- 243 (476)
. .+-++...... +.
T Consensus 151 avga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt 230 (629)
T KOG2300|consen 151 AVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRT 230 (629)
T ss_pred hccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 1 11111100000 00
Q ss_pred ------------------------------chHH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 244 ------------------------------SLEE----------SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 244 ------------------------------~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
.+.. +.++...-.--...|-+++|.++-++++....+...
T Consensus 231 ~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 231 VKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred hHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 0000 001111111112346678888888888776665554
Q ss_pred ChhH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 284 DNEV--------AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD--NHPSVASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 284 ~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
.+.. ...+-++..+-.-.|++.+|++....+.+.+.+..++ -....+.+...+|......+.++.|...|
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 4322 3344566677778899999999999999998876331 12334677788888888899999999999
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHHhhcH
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP---GQQSTIAGIEARMGVMFYMVGRY 430 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 430 (476)
..+.+...+. ...+.+..++|.+|...|+-+.-.+.++. +.+.+. ......+.+++..|...+.++++
T Consensus 391 ~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l 461 (629)
T KOG2300|consen 391 IEATKLTESI------DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDL 461 (629)
T ss_pred HHHHHhhhHH------HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccH
Confidence 9999886442 23566677899999998876544333332 222211 11234567788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccccccccc
Q 011858 431 EEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 431 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
.||...+.+.+++....+ .....+..+..||.+...+||.+.
T Consensus 462 nEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 462 NEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred HHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHH
Confidence 999999999999873332 234456677788888888887654
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=1.4e-11 Score=93.79 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
+..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+..|++++.+.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-------- 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-------- 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------
Confidence 556899999999999999999999988 7888999999999999999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 011858 371 EIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM 426 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (476)
...+++++|.++...|++++|+..|++++.+.+... ..+..++.+...
T Consensus 91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~-------~~~~~~~~~~~~ 138 (144)
T PRK15359 91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA-------SWSEIRQNAQIM 138 (144)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHH
Confidence 377899999999999999999999999999988775 555555555443
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8.5e-09 Score=91.36 Aligned_cols=332 Identities=14% Similarity=0.084 Sum_probs=216.4
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC---
Q 011858 79 LKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR--- 155 (476)
Q Consensus 79 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--- 155 (476)
+..+.+.++.++ .++|+..++-. ++....++...|.+++++|+|++|+..|+..++......
T Consensus 83 fEKAYc~Yrlnk-~Dealk~~~~~--------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 83 FEKAYCEYRLNK-LDEALKTLKGL--------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred HHHHHHHHHccc-HHHHHHHHhcc--------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 688889999985 88888877611 222344677889999999999999999998854331000
Q ss_pred -------------------CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch-------hHHHHH
Q 011858 156 -------------------GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP-------RVGETC 209 (476)
Q Consensus 156 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~ 209 (476)
.+..+....+.+++.+.++...|+|.+|++.+++++.+.++.+..++. ++..+.
T Consensus 148 ~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 148 RRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred HHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 011111123568999999999999999999999999988876654432 244577
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC---------------C--Cc------------------------hHHH
Q 011858 210 RYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE---------------P--AS------------------------LEES 248 (476)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~--~~------------------------~~~~ 248 (476)
..++.++..+|+..+|...|...+........ . .. ...-
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88999999999999999999888764322110 0 00 0001
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHH---------------------------HHHHHHHHH-cC-CChhHHHHHHHHHHHHH
Q 011858 249 ADRRLMALICEAKGDYEAALEHL---------------------------VLASMAMIA-NG-QDNEVAAIDVSIGNIYL 299 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~---------------------------~~a~~~~~~-~~-~~~~~~~~~~~l~~~~~ 299 (476)
.++.+.+.+.+..+.-+.+.+.. .++...+.. .. .+.....+...++.+..
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 23334444444444444333321 111111111 11 22233557788899999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 300 SLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 300 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
.+|+++.|++.+...+....... .+......+-..+-.++...++-+.|...+.+++....... .........+...
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~-~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~--t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSI-LEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ--TGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhh-hhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc--ccchHHHhHHHHH
Confidence 99999999999995553332221 11122233444455677888888889999999999887753 2234555667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHH
Q 011858 380 SAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSS 436 (476)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (476)
+.+..+.|+-++|...+++.++..+... .++..+...|... +.++|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~-------~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDT-------DLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchH-------HHHHHHHHHHHhc-CHHHHHHH
Confidence 8888889999999999999988766653 5555555555443 45555543
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=9.7e-11 Score=96.82 Aligned_cols=285 Identities=15% Similarity=0.085 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc---
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP--- 151 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 151 (476)
...-..+|.+++..| +|++|+..|.-+.+- +.-.++...+++.+++..|.|.+|...-.++-+..
T Consensus 57 ~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~-----------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~ 124 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLG-DYEEALNVYTFLMNK-----------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCI 124 (557)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHhcc-----------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHH
Confidence 345577889999999 599998888776551 22235678899999999999999998877764321
Q ss_pred -------cccCCCchhHH--------HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011858 152 -------DVTRGADHALA--------KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAH 216 (476)
Q Consensus 152 -------~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 216 (476)
-+. +++.... ..+-...++.+.+....|.+|++.|.+.+.- ++.....-..++.+|
T Consensus 125 RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 125 RLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCY 195 (557)
T ss_pred HHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHH
Confidence 011 1111100 0122466778888888899999999988763 667777777888888
Q ss_pred HHhccHHHHHHHHHHHHHHHHhcC------------------------------CCCc----------------------
Q 011858 217 VQAMQFDKAEELCKKTLEIHRAHS------------------------------EPAS---------------------- 244 (476)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~---------------------- 244 (476)
+++.-++-+.+.+.--++..++.. +...
T Consensus 196 yKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred HhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 888887777666554443221100 0000
Q ss_pred ------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 245 ------LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 245 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
..+..+..++...|..+++..+|..+.+. ..|....-+...|.+....|+--...++++-|-+.+
T Consensus 276 VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 276 VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred hchHHHhhChHhhhhheeeecccccHHHHHHHHhh---------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 00123455666777778888888776653 234445556677888888887766666666655544
Q ss_pred HhcCCCC-CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 319 KSSKGDN-HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 319 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
+-..+.. .-++..-...++.+++-..++++-+.++......+... -...++++.++...|++.+|.+.|-
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd---------D~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND---------DDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------chhhhHHHHHHHHhcChHHHHHHHh
Confidence 4332110 11112223334444444455555555554444433221 1234455555555555555555554
Q ss_pred H
Q 011858 398 R 398 (476)
Q Consensus 398 ~ 398 (476)
+
T Consensus 418 ~ 418 (557)
T KOG3785|consen 418 R 418 (557)
T ss_pred h
Confidence 3
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=2.5e-11 Score=115.01 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=140.0
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 011858 172 DTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADR 251 (476)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 251 (476)
.+....|....+.+.+-+++.+.+. .+....++.+||.+....|.+++|...++.++++.+.. ..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------~~a~ 123 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------SEAF 123 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------HHHH
Confidence 3344445555566666666666655 56678999999999999999999999999999987653 4458
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 252 RLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 252 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
.+++.++.+.+++++|+..+++++. ..+..+..++.+|.++...|++++|+.+|++++.. ++....
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~ 189 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFS------GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFEN 189 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHH
Confidence 8899999999999999999999866 56777889999999999999999999999999985 778889
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
++..+|.++...|+.++|...|+++++....
T Consensus 190 ~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 190 GYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999998643
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.39 E-value=1.9e-11 Score=92.99 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 011858 226 EELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFD 305 (476)
Q Consensus 226 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 305 (476)
..++++++++.+.. +..+|.++...|++++|+.+|++++. ..+....++..+|.++...|+++
T Consensus 13 ~~~~~~al~~~p~~-----------~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSVDPET-----------VYASGYASWQEGDYSRAVIDFSWLVM------AQPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHcCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHhhHH
Confidence 45677887776542 45679999999999999999999865 45667889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
+|+..|++++.+ .|....+++++|.++...|++++|+..|++++++.+.
T Consensus 76 ~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 76 TAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998 7888999999999999999999999999999998644
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=7.7e-11 Score=94.73 Aligned_cols=153 Identities=9% Similarity=0.101 Sum_probs=119.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF 333 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 333 (476)
-+..|...|+++......++.. + +. .-+...++.++++..++++++. +|.....|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-------~-~~---------~~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~w 76 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-------D-PL---------HQFASQQTPEAQLQALQDKIRA--------NPQNSEQW 76 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-------C-cc---------ccccCchhHHHHHHHHHHHHHH--------CCCCHHHH
Confidence 3556888888887644432110 0 00 0111366778888999999888 78889999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHhccCCC
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIY-ESVDE--PEEALKLLQRAMKLLEDKPGQQ 410 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~ 410 (476)
..+|.+|...|++++|+..|++++++.++ ...++..+|.++ ...|+ +++|...++++++..++..
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~--- 144 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGE---------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV--- 144 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh---
Confidence 99999999999999999999999998544 367888889874 67777 5999999999999888775
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.++..+|..+...|++++|+.+|++++++....
T Consensus 145 ----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 145 ----TALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 788999999999999999999999999766553
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=6e-11 Score=112.49 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
+....++.+||.+....|++++|+.+++.++++ .|+...+..+++.++.+.+++++|+..+++++...++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-- 152 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-- 152 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--
Confidence 344677888888888888888888888888888 7888888888888888888888888888888887443
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
....++.+|.++.+.|++++|+.+|++++...+.. ..++..+|.++...|+.++|...|+++++..
T Consensus 153 -------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 153 -------SAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-------ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 36778888888888888888888888888733333 2677788888888888888888888888754
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.38 E-value=2.3e-10 Score=109.47 Aligned_cols=250 Identities=14% Similarity=0.066 Sum_probs=177.9
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
..-.|....++..++..+...+ ++++|+..++.+++. .|+....++.+|.++.+.+++.++... .+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~-----------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~ 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKE-----------HKKSISALYISGILSLSRRPLNDSNLL--NL 89 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh-----------CCcceehHHHHHHHHHhhcchhhhhhh--hh
Confidence 3446778889999999998888 599999999988875 677788999999999999999998877 66
Q ss_pred hhhccccCCCchhHHH----------HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 011858 148 ISVPDVTRGADHALAK----------FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHV 217 (476)
Q Consensus 148 l~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 217 (476)
+..........-.... -.+++.+|.||..+|+.++|...|++++++ ++..+.+++++|..|.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYE 161 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHH
Confidence 6665433211111000 146889999999999999999999999998 6888899999999999
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNI 297 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 297 (476)
.. ++++|+.++.+++...-...... .....|. -.+.....+++.=....++. ...-........+.-+-..
T Consensus 162 e~-dL~KA~~m~~KAV~~~i~~kq~~--~~~e~W~--k~~~~~~~d~d~f~~i~~ki----~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFIKKKQYV--GIEEIWS--KLVHYNSDDFDFFLRIERKV----LGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHHhhhcch--HHHHHHH--HHHhcCcccchHHHHHHHHH----HhhhccchhHHHHHHHHHH
Confidence 99 99999999999998764433221 1111121 22222333333333333322 2121233445566677788
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
|...++|++++.+++.++++ .+....+...++.+|. +.|.. ...+++.+++
T Consensus 233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 99999999999999999998 6667778888998887 33333 4444444444
No 106
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=6.6e-09 Score=89.58 Aligned_cols=337 Identities=16% Similarity=0.077 Sum_probs=234.3
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
.-||+ ...++..+..-...| +..-|...|++|++.+. ++......+...|..-..+..++.|...|+-|+
T Consensus 202 ~~HP~-v~~wikyarFE~k~g-~~~~aR~VyerAie~~~--------~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 202 LVHPK-VSNWIKYARFEEKHG-NVALARSVYERAIEFLG--------DDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred eeccc-HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 457788888888888 69999999999999763 334455556666777777788888888888887
Q ss_pred hhcccc---------------CCCchh-H-------------------HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 149 SVPDVT---------------RGADHA-L-------------------AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 149 ~~~~~~---------------~~~~~~-~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
+..++. .|+... . ...++++..-.+-...|+.+.-.+.|++|+..
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 765422 010000 0 00245666666667778888889999999875
Q ss_pred HHHHhcCCchhHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Q 011858 194 QIEALGETDPRVGETCRYLAEAH---VQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEH 270 (476)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 270 (476)
.+..... .--.-.+|..+-.++ ....+.+.+.+.|+.++++.+... ...+.+|...|.....+.+...|.+.
T Consensus 352 vpp~~ek-r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk----FtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 352 VPPASEK-RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK----FTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred CCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc----chHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3221000 000111222222222 346889999999999999876543 35677788889999999999999999
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 011858 271 LVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESK 350 (476)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 350 (476)
+-.|+-.+.+ ..+.-....+-.++++++....+|++-++. .|....+|...|.+-..+|+.+.|.
T Consensus 427 LG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 427 LGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 9888653311 122333445667889999999999999987 8999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH-----
Q 011858 351 SYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY----- 425 (476)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----- 425 (476)
..|+-|+..-. .+-+ ...+......-...|.+++|..+|++.++..+.. .++...|..-.
T Consensus 492 aifelAi~qp~-----ldmp--ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~--------kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 492 AIFELAISQPA-----LDMP--ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV--------KVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHhcCcc-----cccH--HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc--------hHHHhHHHHhcccccc
Confidence 99998886421 1222 2234445566677899999999999998876554 23333443333
Q ss_pred Hhh-----------cHHHHHHHHHHHHHHHHHhccc
Q 011858 426 MVG-----------RYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 426 ~~g-----------~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
..+ +...|...|++|...+++.++.
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~K 592 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTYLKESTPK 592 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcH
Confidence 444 6788999999999999888764
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=3.6e-10 Score=90.89 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=120.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAI 290 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 290 (476)
.-+..|+..|+++......++.. +.. .-+...++.++++..+++++. ..+.....
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~-------~~~------------~~~~~~~~~~~~i~~l~~~L~------~~P~~~~~ 75 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA-------DPL------------HQFASQQTPEAQLQALQDKIR------ANPQNSEQ 75 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh-------Ccc------------ccccCchhHHHHHHHHHHHHH------HCCCCHHH
Confidence 34567888899887644432111 100 011125667788888887765 44666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH-HHcCC--hhHHHHHHHHHHHHHcCCCCCC
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY-HRTGK--LRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
|..+|.+|...|++++|+..|++++.+ .|....++..+|.++ ...|+ +++|...++++++..++
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~----- 142 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN----- 142 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999999999 788899999999974 67787 59999999999998544
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
...++..+|..+...|++++|+.+++++++..+..
T Consensus 143 ----~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 143 ----EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 36789999999999999999999999999987765
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=1.8e-10 Score=104.26 Aligned_cols=257 Identities=18% Similarity=0.137 Sum_probs=191.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhh----hcc----CCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCch
Q 011858 88 SGEGPSKALDYAIRASKSFERCAA----AEA----EPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADH 159 (476)
Q Consensus 88 ~g~~~~~A~~~~~~al~~~~~~~~----~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 159 (476)
.++..+++....+.+...++.... ..+ ..-|........++..+...|-...|+..|++.
T Consensus 357 ~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl------------ 424 (777)
T KOG1128|consen 357 RSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL------------ 424 (777)
T ss_pred CccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------
Confidence 334456666666665555443321 000 022445556778999999999999999999875
Q ss_pred hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 160 ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
..+-....||...|+..+|.....+-++ .+.....|..+|.+.... .+|+++.++....
T Consensus 425 -----emw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~ 483 (777)
T KOG1128|consen 425 -----EMWDPVILCYLLLGQHGKAEEINRQELE---------KDPDPRLYCLLGDVLHDP-------SLYEKAWELSNYI 483 (777)
T ss_pred -----HHHHHHHHHHHHhcccchHHHHHHHHhc---------CCCcchhHHHhhhhccCh-------HHHHHHHHHhhhh
Confidence 3366778899999999999888777665 233344556666555544 4455555544332
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 240 SEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFK 319 (476)
Q Consensus 240 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 319 (476)
.+.+...+|......++|+++.++++.+++ ..+.....|+.+|.+..+.++++.|.+.|..++.+
T Consensus 484 -------sarA~r~~~~~~~~~~~fs~~~~hle~sl~------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-- 548 (777)
T KOG1128|consen 484 -------SARAQRSLALLILSNKDFSEADKHLERSLE------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-- 548 (777)
T ss_pred -------hHHHHHhhccccccchhHHHHHHHHHHHhh------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--
Confidence 223355667777778999999999998876 45666788999999999999999999999999998
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
.|+...+|++++..|...|+..+|...+.++++...+ ...++.+.-.+....|.+++|++.+.+.
T Consensus 549 ------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 549 ------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred ------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8999999999999999999999999999999987422 2456777777888999999999999999
Q ss_pred HHHHHhcc
Q 011858 400 MKLLEDKP 407 (476)
Q Consensus 400 ~~~~~~~~ 407 (476)
+.+.....
T Consensus 614 l~~~~~~~ 621 (777)
T KOG1128|consen 614 LDLRKKYK 621 (777)
T ss_pred HHhhhhcc
Confidence 98877663
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.33 E-value=4e-10 Score=107.83 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=175.0
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
+.++..|...+...+++++|+..++.+++. +|.....++.+|.++...++++++... .++.+........
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 366899999999999999999999988876 778888999999999999999988877 6666655443210
Q ss_pred -----------chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 244 -----------SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQ 312 (476)
Q Consensus 244 -----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 312 (476)
....-.+++.+|.||..+|+.++|...++++++ .++..+.+++++|..|... +.++|+.++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK------ADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 111224688899999999999999999998876 3367788899999999988 9999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHH
Q 011858 313 KALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEA 392 (476)
Q Consensus 313 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 392 (476)
+|+..+-.. .........|..+ +.....+++.=....++.+... .....+..+.-+-..|...++|+++
T Consensus 174 KAV~~~i~~--kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~~-------~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 174 KAIYRFIKK--KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGHR-------EFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHhh--hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhhh-------ccchhHHHHHHHHHHHhhhhhhhHH
Confidence 998875432 1111122222222 2222233333333333333321 1223466777777899999999999
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 393 LKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
+.+++.++++.+.+. .+...++.+|. +.|.. ...+++.+.+..
T Consensus 243 i~iLK~iL~~~~~n~-------~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 243 IYILKKILEHDNKNN-------KAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHHHHHhcCCcch-------hhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 999999999988875 66778888887 55555 667777776543
No 110
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.31 E-value=3.9e-08 Score=91.84 Aligned_cols=338 Identities=12% Similarity=0.019 Sum_probs=221.9
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
+...+.+..-+..+...| .+.+|+++.-.| ++....+..+...+.-....++..--..+. ...
T Consensus 344 ~~~~~lH~~Aa~w~~~~g-~~~eAI~hAlaA------------~d~~~aa~lle~~~~~L~~~~~lsll~~~~----~~l 406 (894)
T COG2909 344 ARLKELHRAAAEWFAEHG-LPSEAIDHALAA------------GDPEMAADLLEQLEWQLFNGSELSLLLAWL----KAL 406 (894)
T ss_pred CchhHHHHHHHHHHHhCC-ChHHHHHHHHhC------------CCHHHHHHHHHhhhhhhhcccchHHHHHHH----HhC
Confidence 344556667777777777 488888776555 223334445555666666666654433332 222
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA-LGETDPRVGETCRYLAEAHVQAMQFDKAEELCK 230 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (476)
+...-..++ ......++......++.+|.....++....+.- .+......+......|.+....|++++|+++.+
T Consensus 407 P~~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar 482 (894)
T COG2909 407 PAELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLAR 482 (894)
T ss_pred CHHHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 211112222 224667788888999999999998887665431 000122344555667888889999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 231 KTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFS 310 (476)
Q Consensus 231 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 310 (476)
.++...+..... ..+.++..+|.+..-.|++++|..+..++.+..+..+.......+....+.++..+|+...|.
T Consensus 483 ~al~~L~~~~~~---~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~-- 557 (894)
T COG2909 483 LALVQLPEAAYR---SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE-- 557 (894)
T ss_pred HHHHhcccccch---hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--
Confidence 999887765543 456678899999999999999999999999999999888888888999999999999433322
Q ss_pred HHHHHHHHHhcCCCCCch---HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011858 311 YQKALTVFKSSKGDNHPS---VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD 387 (476)
Q Consensus 311 ~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (476)
-.++............+. ...+...+...+.+ ++.+..-....+++.... ...+....-.++.++.++...|
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcC
Confidence 222222221111122222 23333334444433 666666666666665442 2222233334468999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 388 EPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 388 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
++++|...+.+......+........+.++.........+|++.+|..+..+.
T Consensus 633 dl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999999887763233344555555555666889999999888773
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.30 E-value=4.8e-10 Score=89.33 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
.|+...+ ..++..+...|+-+.+..+..++....++ +. ..+..+|......|+|.+|+..++++..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-----d~----~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-----DR----ELLAAQGKNQIRNGNFGEAVSVLRKAARL--- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-----cH----HHHHHHHHHHHHhcchHHHHHHHHHHhcc---
Confidence 5666666 88999999999999999998886655432 11 23556999999999999999999999987
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.|....++..+|.+|.+.|++++|..-|.+++++....... .+|+|..+...|+++.|..++..+..
T Consensus 130 -----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~--------~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 130 -----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI--------ANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred -----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh--------hhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999998765544 89999999999999999999998744
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 277 AMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
.......+..+++.+...+|++++|.....+-
T Consensus 197 ------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 197 ------SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred ------CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 33444667889999999999999998776553
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.30 E-value=1.6e-11 Score=82.87 Aligned_cols=77 Identities=32% Similarity=0.574 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
++..+.++.++|.+|..+|++++|+.+|++++++ .+..|++++..+.++.++|.++..+|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 5555666777899999999999999999999999999999864
No 113
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.30 E-value=3.8e-11 Score=81.08 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
++..+.++.++|.+|..+|++++|+.+|++++++..........++.++.++|.++..+|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 467789999999999999999999999999999966653344567999999999999999999999999999998764
No 114
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=3.4e-08 Score=85.34 Aligned_cols=335 Identities=15% Similarity=0.084 Sum_probs=218.8
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
+..+......++.-+..-+... +...|...+++|+.++.+. -..++....+--.+|+...|.+.|++-
T Consensus 100 Ldvd~r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRV-----------dqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 100 LDVDYRNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRV-----------DQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HhcccccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445566778888888888775 6899999999999986443 335666666666677777777777766
Q ss_pred hhhccccC-------------------------CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc
Q 011858 148 ISVPDVTR-------------------------GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 148 l~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
++..+... ...|| .+..+...+..-...|+...|...|++|++.... +
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP--~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d 240 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP--KVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----D 240 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----H
Confidence 65543110 00111 1245677778888889999999999999987533 3
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc----------------CCCCc--------------------hH
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH----------------SEPAS--------------------LE 246 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~--------------------~~ 246 (476)
......+...|..-..+..++.|.-.|+-+++..++. ++... +.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 3444455556666667777888877777777654332 22111 11
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhcC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ-DNEVAAIDVSIGNIY---LSLCRFDEAVFSYQKALTVFKSSK 322 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~ 322 (476)
.-.+|+..-.+-...|+.+.-.+.|++|+.-...... ....-.+|..+-.++ ....+.+.+.+.|+.++++...
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-- 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-- 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc--
Confidence 1234555556666778999999999988653211111 111222333333332 3568899999999999998432
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 323 GDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 323 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
.....+.+|...|....++.+...|.+.+-.|+..+++ ..++.....+-.++++++....+|++.++.
T Consensus 399 --kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK----------~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 399 --KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK----------DKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred --ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc----------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 25567888888888889999999999998888877765 233444445556677777777777777776
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 403 LEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.|.+. .++...|.+-..+|+.+.|...|+-|++
T Consensus 467 ~Pe~c-------~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 467 SPENC-------YAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred ChHhh-------HHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 66653 5666666666667777777666666653
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=1.9e-10 Score=104.07 Aligned_cols=224 Identities=17% Similarity=0.137 Sum_probs=176.0
Q ss_pred hHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 166 GYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
....++..+...|-...|+..|++.- .+.....+|...|+..+|.....+-++ +..
T Consensus 400 ~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~----- 455 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE---KDP----- 455 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc---CCC-----
Confidence 35678999999999998888887643 345566788889999999888777665 111
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
....|..+|.+.....-|++|.++.+.. .+.+...+|......++|.++.++++.++++
T Consensus 456 -d~~lyc~LGDv~~d~s~yEkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~-------- 514 (777)
T KOG1128|consen 456 -DPRLYCLLGDVLHDPSLYEKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEI-------- 514 (777)
T ss_pred -cchhHHHhhhhccChHHHHHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------
Confidence 1233555565555555555555554431 2335566777777899999999999999999
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.+....+|+.+|.+..+.++++.|.+.|..++.+.+. ...+|++++..|...++-.+|...++++++...+
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 8889999999999999999999999999999987433 4789999999999999999999999999988744
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
+. .++.+...+..+.|.+++|++.|.+.+.+-+...+.
T Consensus 586 ~w-------~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 586 HW-------QIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred CC-------eeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 43 566677788899999999999999999887666543
No 116
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=1.6e-08 Score=90.50 Aligned_cols=336 Identities=15% Similarity=0.071 Sum_probs=217.5
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHH--HHHHHHHHhcC-------------Chh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSL--HVLAAIYCSLG-------------KFE 138 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g-------------~~~ 138 (476)
.+..+..+|..|.+.|. +++|.+.|++++...-...+ -.....+| +.-..+...++ +.+
T Consensus 247 ~g~Lw~SLAdYYIr~g~-~ekarDvyeeai~~v~tvrD-----Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGL-FEKARDVYEEAIQTVMTVRD-----FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhheehhh-----HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 46678999999999995 99999999999886433221 11111111 11111111111 123
Q ss_pred HHHHHHHHhhhhccccCCC----chhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011858 139 EAVPALEKAISVPDVTRGA----DHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAE 214 (476)
Q Consensus 139 ~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 214 (476)
-....|+..+...+...+. .++. .+-..+-.+-...|+..+-+..|.+|+....... ........+..+|.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~---nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPH---NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCc---cHHHHHhhhhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHH
Confidence 3344455544433211100 0000 1122334455667888888999999887542211 12234567889999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH------cCCChh--
Q 011858 215 AHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA------NGQDNE-- 286 (476)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~-- 286 (476)
.|...|+.+.|...|+++.+..=. .....+.+|...|..-....+++.|+++.+.|...-.. .+..+.
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 999999999999999999864322 12246778888899989999999999999887542211 111222
Q ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 287 ----VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 287 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
...+|..++.+....|-++.....|++.+++ ..-.+.+..|.|..+....-++++.+.|++.+.+++-
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL--------riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL--------RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 2345666777777888888888999999888 4556778888999998889999999999999998754
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
. ...++...|.....--..-.+.+.|..+|++|++.++... ...++...+.+-..-|--..|+..|++|-
T Consensus 544 p----~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~-----aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 544 P----NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH-----AKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred c----cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 2333444444444444445678999999999998665321 12344455666666777777777777754
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.3e-08 Score=80.65 Aligned_cols=197 Identities=17% Similarity=0.108 Sum_probs=149.3
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 011858 178 GQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALI 257 (476)
Q Consensus 178 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 257 (476)
.+.++-+++....+...... .-.++...++-.+..+....|+.+.|..++++....++... .+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--------RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--------RVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--------hHHHHHHHH
Confidence 34555556666655544432 12345556677778888889999999999998877663322 224556888
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011858 258 CEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLA 337 (476)
Q Consensus 258 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 337 (476)
+...|++++|+++|+..+. ++|....++-..-.+...+|+--+|++.+.+-++. .+....+|..++
T Consensus 96 lEa~~~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eLa 161 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHELA 161 (289)
T ss_pred HHHhhchhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHHH
Confidence 9999999999999997654 55666667777777788899999999999998888 466689999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcc
Q 011858 338 DLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD---EPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~ 407 (476)
.+|...|+|++|.-++++.+=+.+- ....+..+|.+++-+| +++-|.++|.+++++.+...
T Consensus 162 eiY~~~~~f~kA~fClEE~ll~~P~---------n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 162 EIYLSEGDFEKAAFCLEELLLIQPF---------NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHhHhHHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 9999999999999999999876332 2445666777776665 67789999999999988553
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.3e-09 Score=82.73 Aligned_cols=206 Identities=12% Similarity=-0.003 Sum_probs=159.1
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhh
Q 011858 90 EGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQ 169 (476)
Q Consensus 90 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 169 (476)
++.++-++++.+.+....... ..++...++-.+..+....|+.+.|..++++....++.+. ++...
T Consensus 26 rnseevv~l~~~~~~~~k~~~-----~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~---------RV~~l 91 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGA-----LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK---------RVGKL 91 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcc-----cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh---------hHHHH
Confidence 357777888777776554441 3456677788888888999999999999999888775332 34567
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 011858 170 LGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESA 249 (476)
Q Consensus 170 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 249 (476)
-|..+...|++++|+++|+..++- +|....++-..--+...+|+.-+|++.+.+.++.+... ..
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--------~E 155 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--------QE 155 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--------HH
Confidence 788889999999999999998763 56666667676677778899999999999999887543 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC---RFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
+|..++.+|...|+|++|.-++++.+- ..|.....+..+|.+++-+| ++.-|.++|.+++++ .
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~ 221 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLL------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------N 221 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------C
Confidence 589999999999999999999998755 44566667778888887766 567799999999998 4
Q ss_pred chHHHHHHHHHHH
Q 011858 327 PSVASVFVRLADL 339 (476)
Q Consensus 327 ~~~~~~~~~la~~ 339 (476)
+.....++.+-.+
T Consensus 222 ~~~~ral~GI~lc 234 (289)
T KOG3060|consen 222 PKNLRALFGIYLC 234 (289)
T ss_pred hHhHHHHHHHHHH
Confidence 5455555554433
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=6e-10 Score=82.74 Aligned_cols=105 Identities=12% Similarity=0.056 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
.......+.+|..+...|++++|...|+-...+ ++.....|++||.++..+|++++|+..|.+++.+..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-- 101 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-- 101 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--
Confidence 566777889999999999999999999999988 8899999999999999999999999999999998543
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
....+.++|.+++..|+.+.|++.|+.++......
T Consensus 102 -------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 102 -------APQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred -------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 36789999999999999999999999999998544
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.26 E-value=4.5e-10 Score=89.49 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=133.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 252 RLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 252 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
.+++..+...|+-+.+..+..++.. .++.....+..+|...+..|+|.+|+..++++..+ .|....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChh
Confidence 6678888888998888888876532 33334445556899999999999999999999998 888899
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
.+..+|.+|.+.|++++|..-|.+++++.... ..+..++|..+.-.|+++.|..++..+...-....
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~---- 202 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNE---------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS---- 202 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCC---------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch----
Confidence 99999999999999999999999999997652 56789999999999999999999999876655443
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
.+..+++.+....|++++|.....+
T Consensus 203 ---~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 203 ---RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ---HHHHHHHHHHhhcCChHHHHhhccc
Confidence 7788999999999999999876554
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.25 E-value=1.1e-10 Score=92.09 Aligned_cols=121 Identities=19% Similarity=0.073 Sum_probs=97.2
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
......++..+|.++...|++++|+..|++++.+... +.....++.++|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456788999999999999999999999999988432 3345678999999999999999999999999998666
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCc
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKS 452 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 452 (476)
.......++.++..+|..+...|++++|...+.+++..++......+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 54333444555666666666999999999999999998887744443
No 122
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.3e-09 Score=82.63 Aligned_cols=202 Identities=14% Similarity=0.204 Sum_probs=143.6
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNI 297 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 297 (476)
-.+++++|.++|.++-. .|....+++.|-..|.++-+...+.+...+.+..|...+.+
T Consensus 26 g~~k~eeAadl~~~Aan----------------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c 83 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAAN----------------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC 83 (288)
T ss_pred CCcchHHHHHHHHHHHH----------------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 34578888888888744 44445566666666777766666677777778888888877
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT-GKLRESKSYCENALRIYARPVPGTTAEEIAGGL 376 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (476)
|.+. +..+|..+++++++++... +....-+..+..+|.+|... .++++|+.+|+++-+.+... ......-.++
T Consensus 84 ykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~ 157 (288)
T KOG1586|consen 84 YKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCL 157 (288)
T ss_pred hhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHH
Confidence 7655 9999999999999998876 33334466677899999765 89999999999999998752 2233334567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
...+..-...++|.+|+..|++.....-++.-.....-..++.-|.|++...+.-.+...+++-.++.+..
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 77788888899999999999998776555422233344455566777777677666666555555444433
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.8e-08 Score=92.74 Aligned_cols=251 Identities=17% Similarity=0.183 Sum_probs=154.0
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH---HhcCCchh---------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE---ALGETDPR---------VGETCRYLAEAHVQAMQFDKAEELCKKT 232 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (476)
..|++.+..+...++.+.|+++|+++-....+ .+.++.+. ....|...|......|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 45899999999999999999999986322111 11111111 1245677888888999999999999888
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 233 LEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQ 312 (476)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 312 (476)
.+ |+.+..+.+.+|+.++|....++. ++ -.+.+.+|..|...|++.+|+.+|.
T Consensus 939 ~D----------------~fs~VrI~C~qGk~~kAa~iA~es-------gd----~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 939 KD----------------YFSMVRIKCIQGKTDKAARIAEES-------GD----KAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hh----------------hhhheeeEeeccCchHHHHHHHhc-------cc----HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 65 555667777788888887666543 11 2355678888888888888888876
Q ss_pred HH------HHHHHhcCCCCCchH------HHHHHHHHHHHHHcC-ChhHHHHHHHHH------------------HHHHc
Q 011858 313 KA------LTVFKSSKGDNHPSV------ASVFVRLADLYHRTG-KLRESKSYCENA------------------LRIYA 361 (476)
Q Consensus 313 ~a------l~~~~~~~~~~~~~~------~~~~~~la~~~~~~g-~~~~A~~~~~~a------------------~~~~~ 361 (476)
+| +.++++..-.+.-.. ..-....+..|...| +...|..+|.+| +++..
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 65 344443210000000 001122233444444 455555544332 22222
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHhcc----------------CC--CchHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ------RAMKLLEDKP----------------GQ--QSTIAGIE 417 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~a~~~~~~~~----------------~~--~~~~~~~~ 417 (476)
+.. +.......+..-+..+....+|++|..++- .|+.++.... +. ......++
T Consensus 1072 ~DL---d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1072 KDL---DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred Hhc---CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 111 111124556677888888889999887654 4555544320 01 11345678
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 418 ARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
..+|.++.++|.|..|-+-|.+|=+.++
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence 8899999999999999998887754433
No 124
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=7.3e-08 Score=81.61 Aligned_cols=278 Identities=17% Similarity=0.075 Sum_probs=187.0
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.+.....++.-+...-.+| +++.|=.+..++-+. ............+.+....|+++.|.....++++.
T Consensus 114 ~e~p~l~~l~aA~AA~qrg-d~~~an~yL~eaae~----------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 114 GEQPVLAYLLAAEAAQQRG-DEDRANRYLAEAAEL----------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred CcchHHHHHHHHHHHHhcc-cHHHHHHHHHHHhcc----------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 3344555666677778888 499999999888774 12334457788999999999999999999999988
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHhccHHHHHHH
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEA--HVQAMQFDKAEEL 228 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~ 228 (476)
.+. ++ .++.....+|...|++.+...+..+..+..- -.+++.. -+-+.+.. +...++-..+..
T Consensus 183 ~pr-----~~----~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~----l~~~e~~-~le~~a~~glL~q~~~~~~~~g- 247 (400)
T COG3071 183 TPR-----HP----EVLRLALRAYIRLGAWQALLAILPKLRKAGL----LSDEEAA-RLEQQAWEGLLQQARDDNGSEG- 247 (400)
T ss_pred CcC-----Ch----HHHHHHHHHHHHhccHHHHHHHHHHHHHccC----CChHHHH-HHHHHHHHHHHHHHhccccchH-
Confidence 653 22 4577788999999999999888776554310 0122222 22222211 111122111211
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAV 308 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 308 (476)
+..-.+-.+.... ....+...++.-+...|+.++|.+..+++++.. .++. ....++ ...-++...=+
T Consensus 248 L~~~W~~~pr~lr----~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----~D~~---L~~~~~--~l~~~d~~~l~ 314 (400)
T COG3071 248 LKTWWKNQPRKLR----NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ----WDPR---LCRLIP--RLRPGDPEPLI 314 (400)
T ss_pred HHHHHHhccHHhh----cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cChh---HHHHHh--hcCCCCchHHH
Confidence 1111111111110 012224556778889999999999999886522 2222 111122 23556777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011858 309 FSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 309 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (476)
+..++.++. ++..+..+..||.++.+.+.|.+|..+|+.+++.... ...+..+|.++.++|+
T Consensus 315 k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------~~~~~~la~~~~~~g~ 376 (400)
T COG3071 315 KAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS----------ASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------hhhHHHHHHHHHHcCC
Confidence 777777766 6777799999999999999999999999999887543 5678899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011858 389 PEEALKLLQRAMKLLED 405 (476)
Q Consensus 389 ~~~A~~~~~~a~~~~~~ 405 (476)
..+|.+.+++++.....
T Consensus 377 ~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 377 PEEAEQVRREALLLTRQ 393 (400)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 99999999999966544
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=1.5e-07 Score=84.61 Aligned_cols=327 Identities=11% Similarity=0.085 Sum_probs=216.0
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
....+...|..|...| +.+.|...|++|.+.--+ .-.+.+.+|...|..-....+++.|+.+.++|......
T Consensus 386 ~~~Lw~~faklYe~~~-~l~~aRvifeka~~V~y~-------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNG-DLDDARVIFEKATKVPYK-------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred hhhHHHHHHHHHHhcC-cHHHHHHHHHHhhcCCcc-------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 4567899999999998 599999999999885211 23567889999999999999999999999999876542
Q ss_pred c-----CCCchhHH----HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHH
Q 011858 154 T-----RGADHALA----KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDK 224 (476)
Q Consensus 154 ~-----~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 224 (476)
. .+...... ...+|...+......|-++.....|++.+++.- .......+.|..+....-+++
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------aTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------ATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhHHHHH
Confidence 1 11111111 134566777777788888888888888888732 233456677888888888999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRF 304 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 304 (476)
+.+.|++.+.+++-... ..+-..|......-+.--..+.|..+|++|++.+ .+...-.++...+.+-..-|--
T Consensus 530 sFk~YErgI~LFk~p~v---~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C----pp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNV---YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC----PPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred HHHHHHcCCccCCCccH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999887743221 1222223333333333447899999999998733 2223344556667777777888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchH-HHHHHHH-HHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Q 011858 305 DEAVFSYQKALTVFKSSKGDNHPSV-ASVFVRL-ADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAI 382 (476)
Q Consensus 305 ~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 382 (476)
..|+..|++|-... ++.. ...|... ..+-..-| ...-...|++|++..+. ..........+..
T Consensus 603 r~amsiyerat~~v-------~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~-------~~~r~mclrFAdl 667 (835)
T KOG2047|consen 603 RHAMSIYERATSAV-------KEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPD-------SKAREMCLRFADL 667 (835)
T ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCCh-------HHHHHHHHHHHHH
Confidence 88888888865431 2111 1111111 11111112 34557889999998644 2345667788999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 383 YESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 383 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
-...|..+.|...|.-+-++++-. .....|...-..-.+.|+-+ .++..+.+-+..
T Consensus 668 EtklGEidRARaIya~~sq~~dPr-----~~~~fW~twk~FEvrHGned----T~keMLRikRsv 723 (835)
T KOG2047|consen 668 ETKLGEIDRARAIYAHGSQICDPR-----VTTEFWDTWKEFEVRHGNED----TYKEMLRIKRSV 723 (835)
T ss_pred hhhhhhHHHHHHHHHhhhhcCCCc-----CChHHHHHHHHHHHhcCCHH----HHHHHHHHHHHH
Confidence 999999999999998887765432 22345555566666778733 344444444444
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=9.4e-09 Score=83.51 Aligned_cols=184 Identities=19% Similarity=0.228 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
....++..|..++..|++.+|+..|++.+...+... . ...+.+.+|.+++..|++.+|+..+++.+...+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~--~----a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~--- 74 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP--Y----APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN--- 74 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST--T----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh--H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Confidence 356789999999999999999999999999876322 1 1256899999999999999999999999988654
Q ss_pred CCchhHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAM-----------QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAAL 268 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 268 (476)
++....+++.+|.+++... ...+|+..|+..++.+++..-. .+|.
T Consensus 75 --~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~ 130 (203)
T PF13525_consen 75 --SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAK 130 (203)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHH
T ss_pred --CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHH
Confidence 6778889999999877653 2346777777777666553311 1222
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH
Q 011858 269 EHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE 348 (476)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 348 (476)
..+..... ..+.--..+|..|.+.|.+..|+..++.+++.+ ++.+....++..++..|..+|..+.
T Consensus 131 ~~l~~l~~---------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 131 KRLAELRN---------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 22222111 223334668899999999999999999988875 3456667889999999999998875
Q ss_pred HH
Q 011858 349 SK 350 (476)
Q Consensus 349 A~ 350 (476)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 127
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.9e-08 Score=77.35 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=169.6
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..|..-+.+|....+|++|...+.++.+..+.. ...-..+.++-..+.+...+..+.++..+++++..++.+.+.++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd- 108 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD- 108 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-
Confidence 446777788888999999999999999876652 22334566788888889999999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
.+..-...+--....-++++|+.+|++++.+++..+........+...++++.+..+|++|-..+.+-..+..+. .
T Consensus 109 --tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~--~ 184 (308)
T KOG1585|consen 109 --TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC--D 184 (308)
T ss_pred --hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH--h
Confidence 232223334445567789999999999999998888777778888899999999999999999998877776665 3
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
..+.....+.....+|....+|..|..+++...++- +...++...++.+|-..| ..|+.++....+.
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip-----~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP-----AFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc-----cccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 344555666666777778889999999999877763 334455567777776654 4678777766554
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=5.7e-10 Score=82.85 Aligned_cols=103 Identities=10% Similarity=-0.026 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+......+.+|..+...|++++|...|+-...+.. .....+++||.++..+|++++|+..|.+++.+.++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp---------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA---------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 66788889999999999999999999999988743 347899999999999999999999999999999888
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
+ ..++++|.++...|+.+.|.+.|+.++....
T Consensus 103 p-------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 103 P-------QAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred c-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 6 8999999999999999999999999999884
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.5e-10 Score=91.93 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP 365 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 365 (476)
..+.-+-.-|.-+.+.++|.+|+..|.+||++ .|..+..|.+.+.+|.++|.++.|++.++.++.+.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----- 145 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----- 145 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----
Confidence 34555666788888999999999999999998 88889999999999999999999999999999873
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHH
Q 011858 366 GTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYE 431 (476)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (476)
+....+|..||.+|..+|++++|++.|++++++.+.+. ....+|..+-.++++..
T Consensus 146 ----p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne-------~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 146 ----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE-------SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH-------HHHHHHHHHHHHhcCCC
Confidence 34688999999999999999999999999999988773 34444544444444433
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=4.8e-10 Score=85.29 Aligned_cols=114 Identities=17% Similarity=0.088 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011858 309 FSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 309 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (476)
..+++++.. +|........+|..+...|++++|...+++++...+. ...++..+|.++...|+
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~~~ 66 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---------NSRYWLGLAACCQMLKE 66 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHHHH
Confidence 345666665 6777888999999999999999999999999887432 36788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 389 PEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 389 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
+++|+.++++++...+... ..++.+|.++...|++++|+.+|++++++.+.
T Consensus 67 ~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDP-------RPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 9999999999998876654 78889999999999999999999999987543
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=9e-10 Score=83.78 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.++........+|..+...|++++|...+++++.. .+....++..+|.++...|++++|+.++++++.+.+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555677889999999999999999999999887 6777899999999999999999999999999887433
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
....+..+|.++...|++++|+.+|+++++..+..
T Consensus 84 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 ---------DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 36778899999999999999999999999987665
No 132
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.6e-09 Score=84.58 Aligned_cols=225 Identities=18% Similarity=0.176 Sum_probs=165.3
Q ss_pred HhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 011858 132 CSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRY 211 (476)
Q Consensus 132 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 211 (476)
.+..+|.+|++++..-.+..++.. ..+..+|.||+...+|..|-.+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~r---------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSR---------AGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 566788999998887766654221 34889999999999999999999998776 6677777788
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 011858 212 LAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAID 291 (476)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 291 (476)
.+..++..+.+..|+.......+. + .....+...-+.+....+++..+....++. .....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~-~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN-P-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC-H-------HHHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence 899999999999998877655431 0 122333444566666777777777666542 123456678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC------
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP------ 365 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------ 365 (476)
++.|-+.++.|++++|++-|+.+++. .......-++++.++++.|+++.|+++..+.++..-+..|
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 3334556678999999999999999998888775433211
Q ss_pred ---CCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 366 ---GTT-----------AEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 366 ---~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
+.+ ......+++..+.++.+.|+++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 000 11235567777888999999998887653
No 133
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.6e-08 Score=75.24 Aligned_cols=205 Identities=15% Similarity=0.113 Sum_probs=144.9
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 011858 174 CSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRL 253 (476)
Q Consensus 174 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 253 (476)
+...+.+++|.++|.++-.+++ ...+|+.|-..|.++-+...+.+..+ ..+.+|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~~skh--Daat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKAGSKH--DAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhcCCch--hHHHHHHH
Confidence 3344577778777777655433 33445555555555555555544432 33444555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSL-CRFDEAVFSYQKALTVFKSSKGDNHPSVASV 332 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 332 (476)
.+.+|.+ ++.++|..+++++++++...|.-..-+..+..+|.+|... .++++|+.+|+++-+.++.- ......-.+
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC 156 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKC 156 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHH
Confidence 5666554 4999999999999999988888777788888999999765 99999999999999987643 223334567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
+...+..-...++|.+|+..|++.....-.. ..-....-..+..-|.+++...+.-.+...+++..++.|...
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n--~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDN--NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 7777888888999999999999988765432 111223334566678888888888888888888888877763
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.14 E-value=2.2e-08 Score=83.27 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=133.3
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..++..|..+...|++++|+..|++++...+ ..+....+...+|.+++..+++++|+..+++.++..+.+..
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~--- 104 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--- 104 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---
Confidence 3478899999999999999999999998743 35666778899999999999999999999999999887654
Q ss_pred hHHHHHHHHHHHHHHHhC---------------CH---HHHHHHHHHHHHHHHHcCCChh--------------HHHHHH
Q 011858 245 LEESADRRLMALICEAKG---------------DY---EAALEHLVLASMAMIANGQDNE--------------VAAIDV 292 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~a~~~~~~~~~~~~--------------~~~~~~ 292 (476)
...+++.+|.++...+ +. .+|+..|++.+ ...++... .+.--.
T Consensus 105 --~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 105 --IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---RGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred --hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---HHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3556777787754443 22 34555555544 33343322 223335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 293 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
.+|..|.+.|.|..|+.-++.+++.+ ++.+....++..++..|..+|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 67889999999999999999998875 44577889999999999999999999876543
No 135
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.14 E-value=3.9e-06 Score=80.68 Aligned_cols=348 Identities=14% Similarity=0.022 Sum_probs=230.3
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
..+.+.+.+|..++...+|++.|..++++++.+.++. +-......+.+.++.++.+.+... |...+++.++..+
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-----~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH-----RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 3577889999999988889999999999999988762 223345667778899999988877 9999999999876
Q ss_pred ccCCCchhHHHHHhHhhH-HHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 153 VTRGADHALAKFSGYMQL-GDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
... ..... .++..+ ...+...+++..|++.++......... .+......+....+.++...+..+++++..++
T Consensus 131 ~~~-~~~w~---~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 131 TYG-HSAWY---YAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred ccC-chhHH---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 421 22221 122222 333333379999999999999887642 23333445556667778888888999999999
Q ss_pred HHHHHHhc--CCCCchHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHcCCCh----------------------
Q 011858 232 TLEIHRAH--SEPASLEESADRRLMAL--ICEAKGDYEAALEHLVLASMAMIANGQDN---------------------- 285 (476)
Q Consensus 232 al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------------------- 285 (476)
+....... .+..+.....++..+-. ++...|+++.+...+++.-..+......+
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 97776654 22213344444544444 44567787788777766555444322211
Q ss_pred --------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-CC--Cc---------------hHHHHH
Q 011858 286 --------------EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG-DN--HP---------------SVASVF 333 (476)
Q Consensus 286 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--~~---------------~~~~~~ 333 (476)
..+.+|..-|......+..++|.++++++++..++... .+ .. ....+.
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 12234444566667778888999999999999888651 00 00 113345
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc----CC
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP----GQ 409 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~ 409 (476)
..++.+..-.+++..|...++.+.....+.............++..|..+...|+.+.|+.+|.+..-...... ..
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 56677778899999999999999887765421112334467788889999999999999999985553322211 12
Q ss_pred CchHHHHHHHHHHHHHHhhcHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEE 432 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~ 432 (476)
......+..++..++...+....
T Consensus 445 ~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 445 RELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hHHHHHHHHHHHHHhHhhcccch
Confidence 22333445566777766554333
No 136
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.2e-07 Score=74.65 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
.+..|..-+..|....+|++|...+.++.+..+........+..+-..+.+......+.++..+++++..++.+.. .
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---s 106 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---S 106 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---C
Confidence 3445666688888999999999999999988888877788889999999999999999999999999999998873 3
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
++.+..-...+--..+..+.++|+++|++++.+.+. +.........+...++++.....+++|-..+.+-..+....
T Consensus 107 pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 107 PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 444443334444445778899999999999999987 44455567788889999999999999999988877776665
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.........+.....+|.-..+|..|..+++...+
T Consensus 184 -~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 184 -DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred -hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 33344445555666777778899999999988554
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=4.5e-08 Score=90.24 Aligned_cols=251 Identities=17% Similarity=0.151 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc----cccC-CCchhHH------HHHhHhhHHHHHHHcCChhhHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP----DVTR-GADHALA------KFSGYMQLGDTCSMLGQVDRSIGC 186 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~-~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~ 186 (476)
-..-.+|++.+..+...++.+.|+++|+++-.-. +-.. .+..... .-..|...|......|+.+.|+.+
T Consensus 855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence 3445578999999999999999999999874221 1000 0000000 013477789999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHH
Q 011858 187 YEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEA 266 (476)
Q Consensus 187 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 266 (476)
|..|-+. +.+..+...+|+.++|....++.- + -.+.+.+|+.|...|++.+
T Consensus 935 Y~~A~D~----------------fs~VrI~C~qGk~~kAa~iA~esg-------d------~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 935 YSSAKDY----------------FSMVRIKCIQGKTDKAARIAEESG-------D------KAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HHHhhhh----------------hhheeeEeeccCchHHHHHHHhcc-------c------HHHHHHHHHHhhhhHHHHH
Confidence 9887654 333344445555555544433321 1 1123455666666666666
Q ss_pred HHHHHHHH------HHHHHHcCCChhHHHH--------HHHHH--------------HHHHHcCCHHHHHHHHHH-----
Q 011858 267 ALEHLVLA------SMAMIANGQDNEVAAI--------DVSIG--------------NIYLSLCRFDEAVFSYQK----- 313 (476)
Q Consensus 267 A~~~~~~a------~~~~~~~~~~~~~~~~--------~~~l~--------------~~~~~~g~~~~A~~~~~~----- 313 (476)
|+.+|.+| +++++.++........ ....+ .+|.+.|.+.+|++..-+
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 66555443 2333333222111111 01122 334444555555443321
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH------HHHHHHHcCCC------------C----CCChHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC------ENALRIYARPV------------P----GTTAEE 371 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~------------~----~~~~~~ 371 (476)
++++..+-. +....+..+..-+..+....+|++|..++ +.|+.++...+ + ..+...
T Consensus 1066 aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1066 ALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred HHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 233332221 22334667777888888999999998764 45555554321 1 112234
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
...++..+|.++.++|.|..|-+-|.+|
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 5678889999999999999888877765
No 138
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.13 E-value=8.6e-06 Score=78.33 Aligned_cols=319 Identities=15% Similarity=0.057 Sum_probs=215.3
Q ss_pred CChhHHHHHHHHHHHHH-hcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYC-SLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQ 194 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 194 (476)
.....+.+...+|.+++ ...++++|..++++++.+... ..-....+.+...++.++...+... |...+++.++..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 34567788999999988 789999999999999999875 2223334566778899999988877 999999999987
Q ss_pred HHHhcCCchhHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 195 IEALGETDPRVGETCRYL-AEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
+.. .+.....++..+ ...+...+++..|.+.++.........+++. ....+....+.+....+..+++++.+++
T Consensus 130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~--~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA--VFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 652 122233333333 3333334799999999999999887666652 3444455557777888889999999998
Q ss_pred HHHHHHHc--C--CChhHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhcCCCC-------C--------------
Q 011858 274 ASMAMIAN--G--QDNEVAAIDVSIGN--IYLSLCRFDEAVFSYQKALTVFKSSKGDN-------H-------------- 326 (476)
Q Consensus 274 a~~~~~~~--~--~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~-------------- 326 (476)
+....... + .......++..+-. ++...|+++.+...+++.-+......... +
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 87766643 1 12222333333333 45667887777776665544443331110 0
Q ss_pred ---c----------hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC---CCCCh--------------HHHHHHH
Q 011858 327 ---P----------SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV---PGTTA--------------EEIAGGL 376 (476)
Q Consensus 327 ---~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~--------------~~~~~~~ 376 (476)
+ ....+|..-|......+..++|.++++++++..++.. +.... .....++
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 0 0122334445566677777899999999999877643 00000 0112344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ--QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
..++.+..-.+++..|...++.+.....+.+.. ......+++..|..+...|+.+.|..+|.+..-.
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~ 433 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFL 433 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHh
Confidence 556777788999999999999998887765331 2334567788899999999999999999855533
No 139
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=4.8e-09 Score=82.84 Aligned_cols=123 Identities=15% Similarity=0.005 Sum_probs=92.0
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
....+..++.+|.++...|++++|+..|++++.+.+. +.....++.++|.++...|++++|+.++++++.+....
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 3456778999999999999999999999999988532 12345679999999999999999999999998752111
Q ss_pred CC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchH
Q 011858 282 GQ-DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSV 329 (476)
Q Consensus 282 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 329 (476)
.. ....+.++..+|..+...|++++|+..+.+++..+++..+.++...
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 10 1122333444444444999999999999999998888766655443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.12 E-value=1.7e-08 Score=77.28 Aligned_cols=123 Identities=21% Similarity=0.217 Sum_probs=97.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 300 SLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 300 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
..++...+...+++.+.-. ++.+....+...+|.++...|++++|...|++++... .++.....+...+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence 5788888877777766652 2344557888899999999999999999999999863 2344456678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 380 SAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
+.++...|++++|+..++.. ........++..+|.+|...|++++|+..|++|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998652 2222344677789999999999999999999875
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=4.9e-09 Score=89.35 Aligned_cols=257 Identities=14% Similarity=0.112 Sum_probs=158.3
Q ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHH
Q 011858 83 RDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALA 162 (476)
Q Consensus 83 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 162 (476)
+.++-.| +|.+++.-++ +.. ............+.+++..+|+++..+.-.... ..+..
T Consensus 9 rn~fy~G-~Y~~~i~e~~--~~~---------~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~-------~~~~l--- 66 (290)
T PF04733_consen 9 RNQFYLG-NYQQCINEAS--LKS---------FSPENKLERDFYQYRSYIALGQYDSVLSEIKKS-------SSPEL--- 66 (290)
T ss_dssp HHHHCTT--HHHHCHHHH--CHT---------STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT-------SSCCC---
T ss_pred HHHHHhh-hHHHHHHHhh--ccC---------CCchhHHHHHHHHHHHHHHcCChhHHHHHhccC-------CChhH---
Confidence 4456677 5777775554 110 134556677888999999999988665433221 11111
Q ss_pred HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 163 KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP-RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
.+...++..+...++-+.++.-++..+ ..... .........|.++...|++++|++.+.+.-
T Consensus 67 --~av~~la~y~~~~~~~e~~l~~l~~~~-------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-------- 129 (290)
T PF04733_consen 67 --QAVRLLAEYLSSPSDKESALEELKELL-------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-------- 129 (290)
T ss_dssp --HHHHHHHHHHCTSTTHHCHHHHHHHCC-------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT--------
T ss_pred --HHHHHHHHHHhCccchHHHHHHHHHHH-------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC--------
Confidence 234555555544344444444333222 11211 223455667788888999999998887540
Q ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Q 011858 242 PASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC--RFDEAVFSYQKALTVFK 319 (476)
Q Consensus 242 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~ 319 (476)
..........++..+++++.|.+.++.. ....++... +....+++.+..| .+.+|...|++..+.
T Consensus 130 -----~lE~~al~Vqi~L~~~R~dlA~k~l~~~----~~~~eD~~l--~qLa~awv~l~~g~e~~~~A~y~f~El~~~-- 196 (290)
T PF04733_consen 130 -----SLELLALAVQILLKMNRPDLAEKELKNM----QQIDEDSIL--TQLAEAWVNLATGGEKYQDAFYIFEELSDK-- 196 (290)
T ss_dssp -----CHHHHHHHHHHHHHTT-HHHHHHHHHHH----HCCSCCHHH--HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--
T ss_pred -----cccHHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCcHHH--HHHHHHHHHHHhCchhHHHHHHHHHHHHhc--
Confidence 1122445677899999999999988765 333343332 2333344444444 689999999885432
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP-EEALKLLQR 398 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~ 398 (476)
.+....+++.++.++..+|++++|.+.+++++...+ ....++.+++.+....|+. +.+.+++.+
T Consensus 197 ------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~---------~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 197 ------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP---------NDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp ------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C---------CHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred ------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 345578899999999999999999999999875422 2366888999999999998 666777777
Q ss_pred HHHHHHhc
Q 011858 399 AMKLLEDK 406 (476)
Q Consensus 399 a~~~~~~~ 406 (476)
.....+..
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 66655544
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.2e-09 Score=87.32 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
..++.+-.-|.-+...++|.+|+..|.+|+++.+.. +..|.+.+.+|.++|.++.|++-++.++. .
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n--------AVyycNRAAAy~~Lg~~~~AVkDce~Al~------i 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN--------AVYYCNRAAAYSKLGEYEDAVKDCESALS------I 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc--------chHHHHHHHHHHHhcchHHHHHHHHHHHh------c
Confidence 456667788999999999999999999999987654 34489999999999999999999999977 5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChh
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLR 347 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 347 (476)
++....+|..||.+|..+|++++|++.|++++++ +|.......+|..+-..+++..
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999999999999999 7777788888887777766655
No 143
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=7.2e-07 Score=72.69 Aligned_cols=181 Identities=17% Similarity=0.070 Sum_probs=127.8
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (476)
....|.....+..+|.+|+...+ |..|.++|++.-.++ |......+..+..++..+.+.+|+......
T Consensus 37 ~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~-----------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLH-----------PELEQYRLYQAQSLYKACIYADALRVAFLL 104 (459)
T ss_pred HhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhC-----------hHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 34566666788899999998874 999999999877653 445555566677777777777777665544
Q ss_pred hhh----------------cc-----------ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 148 ISV----------------PD-----------VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 148 l~~----------------~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
.+. .. ...+.+. .....+.|-+.++.|+++.|++-|+.+++. ++
T Consensus 105 ~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~----Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sG 175 (459)
T KOG4340|consen 105 LDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENE----ADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SG 175 (459)
T ss_pred cCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCc----cchhccchheeeccccHHHHHHHHHHHHhh-----cC
Confidence 331 10 0111111 245788999999999999999999999987 22
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC---------------------CchHHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP---------------------ASLEESADRRLMALICE 259 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~la~~~~ 259 (476)
-.| ..-++++.+++..|+++.|+++..+.++..-+.... .......+++..+.+++
T Consensus 176 yqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 176 YQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 233 346789999999999999999999888765432211 01122445667788889
Q ss_pred HhCCHHHHHHHHH
Q 011858 260 AKGDYEAALEHLV 272 (476)
Q Consensus 260 ~~g~~~~A~~~~~ 272 (476)
+.++++.|.+.+.
T Consensus 253 q~~n~eAA~eaLt 265 (459)
T KOG4340|consen 253 QLRNYEAAQEALT 265 (459)
T ss_pred hcccHHHHHHHhh
Confidence 9999998887764
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=8.8e-08 Score=79.70 Aligned_cols=180 Identities=10% Similarity=0.051 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
...++..|..+...|++++|++.|++.+. ..+..+....+...+|.+++..+++++|+..+++.++.. ++++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCC
Confidence 34467789999999999999999998755 445566777788999999999999999999999999985 5578
Q ss_pred hHHHHHHHHHHHHHHcC---------------C---hhHHHHHHHHHHHHHcCCCCCCC--------hHHHHHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTG---------------K---LRESKSYCENALRIYARPVPGTT--------AEEIAGGLTEISA 381 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~la~ 381 (476)
....+++.+|.++...+ | ..+|+..|++.++.+++...... ....+.--..+|.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998865443 1 24677888888888765310000 0112233346788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 382 IYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 382 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
.|.+.|.+..|+.-++.+++..+.. ....+++..++..|..+|..++|..+...
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t----~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDT----QATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCC----chHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8999999999999999999877665 34557888999999999999999876654
No 145
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=1.4e-07 Score=76.77 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=126.5
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..++..|..++..|+|.+|+..|++.+...+. ++....+.+.+|.+++..|++++|+..+++.++..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~---- 76 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP---- 76 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----
Confidence 45899999999999999999999999987543 677888999999999999999999999999999887754
Q ss_pred hHHHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 245 LEESADRRLMALICEAKGD-----------YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
....+++.+|.++..... ..+|+..|+.. +...++.+. ..+|...+..
T Consensus 77 -~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l---i~~yP~S~y-----------------~~~A~~~l~~ 135 (203)
T PF13525_consen 77 -KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL---IKRYPNSEY-----------------AEEAKKRLAE 135 (203)
T ss_dssp -THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH---HHH-TTSTT-----------------HHHHHHHHHH
T ss_pred -chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH---HHHCcCchH-----------------HHHHHHHHHH
Confidence 345667777777665421 12333333322 222222222 2233333332
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
+-+ ..+.--..+|..|.+.|.+..|+..++.+++.++.. .....++..++..|..+|..+.|.
T Consensus 136 l~~-----------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 136 LRN-----------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHH-----------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC------chHHHHHHHHHHHHHHhCChHHHH
Confidence 222 223445668999999999999999999999987653 456678999999999999988553
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=2.3e-09 Score=84.85 Aligned_cols=113 Identities=21% Similarity=0.276 Sum_probs=89.8
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
..+..+..+..+|..+...|++++|+.+|++++++... ......++..+|.++...|++++|+.++++++...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 35667888999999999999999999999999987543 223467899999999999999999999999999876
Q ss_pred hccCCCchHHHHHHHHHHHHHH-------hhcHHHHHHHHHHHHHHHHHhccc
Q 011858 405 DKPGQQSTIAGIEARMGVMFYM-------VGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
... ..+..+|.++.. .|++++|+..++++++.++.....
T Consensus 104 ~~~-------~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 104 KQP-------SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred ccH-------HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 553 445555666655 556788888888888877766443
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.04 E-value=3.3e-08 Score=75.73 Aligned_cols=123 Identities=22% Similarity=0.196 Sum_probs=98.4
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNI 297 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 297 (476)
..++...+...+++.+.-.+. ......+...+|.++...|++++|...|+.++. ...+......+...++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~-----s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~---~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPS-----SPYAALAALQLAKAAYEQGDYDEAKAALEKALA---NAPDPELKPLARLRLARI 94 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHH
Confidence 578888887777776654332 234566788899999999999999999998765 224455567788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
+...|++++|+..++.. .+.+.....+..+|.++...|++++|+..|++++
T Consensus 95 ~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999998662 2345667788899999999999999999999874
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=7.6e-09 Score=91.69 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
+...|..++..|+|++|+.+|++++++ .+....++.++|.+|..+|++++|+..+++++.+.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------- 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-------- 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------
Confidence 455688899999999999999999998 7778899999999999999999999999999998543
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh
Q 011858 371 EIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV 427 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (476)
...+++.+|.++..+|++++|+..|++++.+.+... .+...++.+....
T Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~-------~~~~~l~~~~~kl 117 (356)
T PLN03088 69 -LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS-------RFTKLIKECDEKI 117 (356)
T ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHH
Confidence 367899999999999999999999999999987764 4555556555444
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=3.6e-08 Score=78.07 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=77.4
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
....+..+..++.+|..+...|++++|+.+|++++++.. +.+....++..+|.++...|++++|+.++++++.+.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 334556677889999999999999999999999988732 123346788999999999999999999999999874
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLL 396 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (476)
+. ....+..+|.++...|+...+...+
T Consensus 103 p~---------~~~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 103 PK---------QPSALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred cc---------cHHHHHHHHHHHHHcCChHhHhhCH
Confidence 33 2556677788887776654444333
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.5e-08 Score=75.11 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
.+++.+|..+...|++++|+..|.+++... ++++....+++.+|.++...|++++|+.+|++++...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------ 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK------ 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC------
Confidence 467889999999999999999999998762 223444678899999999999999999999999987543
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+....++..+|.++...|++++|+.+++++++..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 22346678999999999999999999999999987765
No 151
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=9e-09 Score=87.77 Aligned_cols=252 Identities=20% Similarity=0.151 Sum_probs=155.9
Q ss_pred HHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHH
Q 011858 129 AIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGET 208 (476)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 208 (476)
+-++..|+|..++.-++ ..... .. ........+.+++..+|+++..+.-... ..+|. ..+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~-----~~---~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~a 68 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS-----PE---NKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQA 68 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST-----CH---HHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC-----ch---hHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHH
Confidence 44567899999997666 11111 11 1234567888999999987765533211 12222 334
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA 288 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 288 (476)
...++..+...++-+.++..+++.+ .+........+....|.++...|++++|++.+.+. ...
T Consensus 69 v~~la~y~~~~~~~e~~l~~l~~~~------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~l 131 (290)
T PF04733_consen 69 VRLLAEYLSSPSDKESALEELKELL------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSL 131 (290)
T ss_dssp HHHHHHHHCTSTTHHCHHHHHHHCC------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHH------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------Ccc
Confidence 4555555544344444443332221 11111112233556678888899999999888642 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHcCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG--KLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.+......++...++++.|.+.++.+.++ ..+...+....+++....| .+.+|...|++..+.+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~----- 198 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG----- 198 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC-----
Confidence 44455778999999999999888776544 3344444445555555555 58999999999654321
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcH-HHHHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRY-EEARSSFESAI 441 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~ 441 (476)
....+++.++.++..+|++++|...+++++...+.. ..++.+++.+....|+. +.+.+++.+..
T Consensus 199 ----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-------~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 199 ----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND-------PDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-------HHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 236778999999999999999999999987654443 37888999999999998 44555655543
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=8.4e-09 Score=70.53 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=67.8
Q ss_pred HcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 011858 342 RTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMG 421 (476)
Q Consensus 342 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (476)
.+|++++|+.+++++++..+. + + ....+..+|.++...|++++|+.++++ ....+.. ..+...+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-------~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----N-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-------PDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----T-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-------HHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----C-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-------HHHHHHHH
Confidence 368999999999999998643 1 1 355777799999999999999999999 5555544 26667789
Q ss_pred HHHHHhhcHHHHHHHHHHH
Q 011858 422 VMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~a 440 (476)
.++..+|++++|++.|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=8.8e-08 Score=83.46 Aligned_cols=148 Identities=23% Similarity=0.205 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
.+++..+..++..|++++|+..+...+. ..|.....+...+.++...|+.++|.+.+++++.. .|.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~ 372 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPN 372 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Confidence 3466677777788888888887776433 33444556667788888888888888888888877 666
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC
Q 011858 329 VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG 408 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 408 (476)
......++|..+.+.|++.+|+..++..+.-.+ +....|..|+..|..+|+..+|...+
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p---------~dp~~w~~LAqay~~~g~~~~a~~A~------------ 431 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP---------EDPNGWDLLAQAYAELGNRAEALLAR------------ 431 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC---------CCchHHHHHHHHHHHhCchHHHHHHH------------
Confidence 677778888888888888888877777765432 23567777888888877776665433
Q ss_pred CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 409 QQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
++.|...|++++|+..+..+.+.
T Consensus 432 ------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 ------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 44455566666666666666543
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.92 E-value=9.8e-09 Score=67.30 Aligned_cols=65 Identities=26% Similarity=0.439 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHH
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG-KLRESKSYCENALRIY 360 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~ 360 (476)
+.++..+|.+++..|++++|+.+|++++++ +|....++.++|.++..+| ++++|+..+++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999 8889999999999999999 7999999999999873
No 155
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1.3e-07 Score=82.50 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
....+.+..+..++..|++++|+..++..+...+ +++ ..+...+.++...++..+|.+.+++++.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-----~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-----DNP----YYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-----CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 4455788888888899999999999988777665 222 34677888899999999999999998887
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
.|.......++|.++...|++.+|+..++..+.-.+.. ...|..|+..|..+|+-.++...
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d--------p~~w~~LAqay~~~g~~~~a~~A-------- 430 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED--------PNGWDLLAQAYAELGNRAEALLA-------- 430 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--------chHHHHHHHHHHHhCchHHHHHH--------
Confidence 55556778888999999999998888888876644333 33388888888888887766543
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
.+..|...|++++|+..+..+.+..
T Consensus 431 ---------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 ---------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ---------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3456777888999988888887763
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.91 E-value=4.3e-08 Score=86.95 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
+...|..++..|++++|+.+|++++.. .+....++.++|.++...|++++|+..+++++.+ .+...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPSLA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCH
Confidence 456688899999999999999999773 3445678899999999999999999999999998 77888
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+++.+|.++..+|++++|+..|++++.+...
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999998543
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=3.1e-08 Score=73.48 Aligned_cols=105 Identities=14% Similarity=0.227 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQ 410 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 410 (476)
.+++.+|..+...|++++|+..|++++...+. .+....+++.+|.++...|++++|+.+|++++...+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--- 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP--- 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---
Confidence 56788999999999999999999999987432 223466788999999999999999999999998765531
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
....++..+|.++...|++++|..+++++++..+
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 74 -KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred -cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 2236788999999999999999999999997643
No 158
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.90 E-value=1.6e-05 Score=74.97 Aligned_cols=266 Identities=11% Similarity=-0.008 Sum_probs=171.0
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCC
Q 011858 78 LLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGA 157 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 157 (476)
.+..+....... .+.+|.....++......... .......+......|.+....|++++|+.+.+.++...+...
T Consensus 418 vll~aW~~~s~~-r~~ea~~li~~l~~~l~~~~~--~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 418 VLLQAWLLASQH-RLAEAETLIARLEHFLKAPMH--SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred HHHHHHHHHHcc-ChHHHHHHHHHHHHHhCcCcc--cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 345555556666 499999988888776544211 012234455666678888999999999999999998876432
Q ss_pred chhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHH
Q 011858 158 DHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAE--ELCKKTLEI 235 (476)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~al~~ 235 (476)
....+.++..+|.+....|++++|..+...+.++.+.. +.......+....+.++..+|+...+. ..+...-..
T Consensus 493 --~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 493 --YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred --chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 22334668999999999999999999999999998875 223344556777888999999433333 333322222
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 236 HRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAA-IDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
....... +-.. ....+.++...-+++.+..-....+.+.......+.... .++.++.+++..|++++|...+.+.
T Consensus 569 ~l~q~~~-~~f~---~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 569 HLEQKPR-HEFL---VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred Hhhhccc-chhH---HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111111 1111 222333333333467776666666665544444443333 3358999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 315 LTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 315 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
........ ......+.++.........+|+.++|.....+..
T Consensus 645 ~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 645 ERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 88876542 1122223334444445567899999988877743
No 159
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=3e-06 Score=83.15 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=167.8
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
+|+.+..|...-..+...++.++|.+.+++|+.........+. ..+|..+-++...-|.-+.-.+.|++|.+.+.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEK----LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEK----LNIWIAYLNLENAYGTEESLKKVFERACQYCD- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHH----HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-
Confidence 6777778888888889999999999999999987632222211 13344444455555666777788888888742
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
-..++..|..+|...+++++|.++++..++.+.+. ..+|...+..+..+++-+.|...+.+|+.
T Consensus 1529 --------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 --------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred --------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 23578889999999999999999999999887632 34488889999999999999999999988
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 277 AMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
...+ ..........+.+-++.|+.+.+...|+..+.. +|.....|.-+...-.+.|+.+..+..|+++
T Consensus 1593 ~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1593 SLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6644 233455677889999999999999999998877 7777889999999999999999999999999
Q ss_pred HHHH
Q 011858 357 LRIY 360 (476)
Q Consensus 357 ~~~~ 360 (476)
+.+.
T Consensus 1661 i~l~ 1664 (1710)
T KOG1070|consen 1661 IELK 1664 (1710)
T ss_pred HhcC
Confidence 9873
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=5.7e-07 Score=87.93 Aligned_cols=210 Identities=16% Similarity=0.146 Sum_probs=163.1
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
+|.....|...-..+...++.++|.+.+++|+....-.... ....+|..+-++...-|.-+.-.+.|++|.+++
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---EKLNIWIAYLNLENAYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---
Confidence 67777777777788889999999999999998765222222 222333333344444566677778888886654
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+-..++..|..+|...+++++|.++++..++.+. ....+|..++..++++++-+.|...+.+|+...+
T Consensus 1528 ----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1528 ----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred ----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 2245778889999999999999999999988853 3467899999999999999999999999999876
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
+. .........|.+-++.|+.+.+...|+..+...|+.. ..|......-.+.|+.+.++..|++++
T Consensus 1596 k~-------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt-------DlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1596 KQ-------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT-------DLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hh-------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch-------hHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 52 3467788889999999999999999999988877664 677777788888888888888888887
Q ss_pred HH
Q 011858 442 AK 443 (476)
Q Consensus 442 ~~ 443 (476)
.+
T Consensus 1662 ~l 1663 (1710)
T KOG1070|consen 1662 EL 1663 (1710)
T ss_pred hc
Confidence 64
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.87 E-value=6.7e-08 Score=69.68 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQ 410 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 410 (476)
.+.+.+|.++...|+.++|+.+|++++.. +........++..+|..+..+|++++|+..+++++...+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---
Confidence 46788999999999999999999999985 444556678999999999999999999999999987655421
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
....+...++.++...|++++|+..+-.++.
T Consensus 73 -~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 -LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred -ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1124445678899999999999999988774
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.86 E-value=1.5e-08 Score=66.47 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=59.9
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM-QFDKAEELCKKTLEIH 236 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 236 (476)
.++..+|.++...|++++|+.+|++++++ +|....+++++|.++..+| ++++|+..+++++++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45899999999999999999999999998 6788899999999999999 8999999999999864
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=2.5e-08 Score=68.22 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=66.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADL 339 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 339 (476)
..|++++|+.++++.+..... .+ ....++.+|.+++..|++++|+.++++ .+. .+........+|.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLARC 67 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHHH
Confidence 368999999999998764422 22 455777799999999999999999999 444 44556777788999
Q ss_pred HHHcCChhHHHHHHHHH
Q 011858 340 YHRTGKLRESKSYCENA 356 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a 356 (476)
+..+|++++|+..++++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.85 E-value=3.1e-08 Score=70.41 Aligned_cols=97 Identities=31% Similarity=0.459 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCCh
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA 369 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 369 (476)
++..+|.++...|++++|+..++++++. .+....++..+|.++...|++++|+.++++++......
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------ 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------
Confidence 4678899999999999999999999887 44445788999999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 370 EEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
..++..+|.++...|++++|..++.+++...
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 68 ---AKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ---hhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 3678899999999999999999999887653
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.84 E-value=3.4e-07 Score=66.03 Aligned_cols=102 Identities=24% Similarity=0.239 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
.+.+.+|.++-..|+.++|+.+|++++.. |.+......++..+|..+..+|++++|+..+++++...+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD------ 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------
Confidence 35788999999999999999999999885 2334556789999999999999999999999999876433
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
.+........++.++...|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112344556678899999999999998877664
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-07 Score=79.39 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
..++.|++.++.++++|.+|+..+.+++.+-+. ...+++..|.++..+|+++.|+..|++++++.|.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-- 325 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN---------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-- 325 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC---------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--
Confidence 467899999999999999999999999998544 378999999999999999999999999999998884
Q ss_pred CchHHHHHHHHHHHHHHhhcHHH-HHHHHHHHHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEE-ARSSFESAIAKLRA 446 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~ 446 (476)
.+...+..+..+..++.+ ..+.|...+.....
T Consensus 326 -----a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 326 -----AARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 566667777666555544 36777777765443
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=6.2e-08 Score=68.77 Aligned_cols=96 Identities=29% Similarity=0.500 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.++++++...+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----
Confidence 57789999999999999999999999875331 36788999999999999999999999998766553
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.++..+|.++...|++++|..++.++++.
T Consensus 69 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 69 ---KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred ---hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 67889999999999999999999998754
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.3e-07 Score=79.30 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQ---------DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 321 (476)
...-|..|++.|+|..|...|++++..+..... ......+++|++.++.++++|.+|+.+..++|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---- 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---- 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 445689999999999999999999887763221 1234568899999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Q 011858 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPE-EALKLLQRAM 400 (476)
Q Consensus 322 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~ 400 (476)
.+....+++..|.++..+|+++.|+..|++++++.+.. -.+...+..+..+..++. +..+.|..+.
T Consensus 287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N---------ka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN---------KAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999986542 334445555544444333 3466777666
Q ss_pred HHHH
Q 011858 401 KLLE 404 (476)
Q Consensus 401 ~~~~ 404 (476)
....
T Consensus 354 ~k~~ 357 (397)
T KOG0543|consen 354 AKLA 357 (397)
T ss_pred hccc
Confidence 5544
No 169
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=2.5e-05 Score=72.02 Aligned_cols=272 Identities=14% Similarity=0.150 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
....-...|.-+...|+++.|+..|-++-.+. .-........+|.+|+..++....
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~~~-----------------kaieaai~akew~kai~ildniqd------- 760 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-----------------KAIEAAIGAKEWKKAISILDNIQD------- 760 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-----------------HHHHHHhhhhhhhhhHhHHHHhhh-------
Confidence 33344456667777777777777776653332 111222233445555554443221
Q ss_pred CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
.......|-.++.-|...|+|+.|.++|.++-. ...-...|.+.|++++|.++-++.
T Consensus 761 --qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------------~~dai~my~k~~kw~da~kla~e~----- 817 (1636)
T KOG3616|consen 761 --QKTASGYYGEIADHYANKGDFEIAEELFTEADL----------------FKDAIDMYGKAGKWEDAFKLAEEC----- 817 (1636)
T ss_pred --hccccccchHHHHHhccchhHHHHHHHHHhcch----------------hHHHHHHHhccccHHHHHHHHHHh-----
Confidence 112223455677777888888888887776522 122244566777777776665543
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhcCCCC---------Cc-hHHHHHHHHHHHHHHc
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSY------QKALTVFKSSKGDN---------HP-SVASVFVRLADLYHRT 343 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~---------~~-~~~~~~~~la~~~~~~ 343 (476)
..+......|...+.-+-..|+|.+|.+.| .+++.++.+..-.+ ++ ........+|.-+...
T Consensus 818 --~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 818 --HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAE 895 (1636)
T ss_pred --cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhc
Confidence 123334445555566666666666665554 34444444332111 11 2345666777777788
Q ss_pred CChhHHHHHHHHHH-------------------HHHcCCCCCCChHHHHH-HHHH------HHHHHHHcCCHHHHHHH--
Q 011858 344 GKLRESKSYCENAL-------------------RIYARPVPGTTAEEIAG-GLTE------ISAIYESVDEPEEALKL-- 395 (476)
Q Consensus 344 g~~~~A~~~~~~a~-------------------~~~~~~~~~~~~~~~~~-~~~~------la~~~~~~g~~~~A~~~-- 395 (476)
|+...|...|-++- ++.+..+ |.+...... .|.. -..++.+.|-.+.|+.+
T Consensus 896 g~lkaae~~flea~d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~ 974 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAA 974 (1636)
T ss_pred cChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhh
Confidence 88877776665443 2332221 111111111 1100 11233344555555443
Q ss_pred ----HHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 396 ----LQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 396 ----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
|+-+.++.+- +....+..++..++..+...|++++|-+.|-+++++
T Consensus 975 d~~afd~afdlari--~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 975 DNCAFDFAFDLARI--AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred cccchhhHHHHHHH--hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 2222222221 111223356778888999999999999999988864
No 170
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.77 E-value=8.7e-07 Score=62.51 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
..+-..|..+...|+.+.|++.|.+++.+ .|..+.+|++.+..+.-+|+.++|+.-+++++++. +..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~ 110 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQ 110 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Ccc
Confidence 34455678888999999999999999999 67789999999999999999999999999999997 334
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
......++...|.+|..+|+.+.|..-|+.+.++-.
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 555677899999999999999999999999987643
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.75 E-value=3e-07 Score=77.00 Aligned_cols=107 Identities=15% Similarity=0.253 Sum_probs=89.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 289 AIDVSIGNIY-LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 289 ~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
...+..+..+ ...|+|++|+..|++.++.+ ++......+++.+|.+|...|++++|+..|+++++.++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 3445555554 66799999999999999884 234455789999999999999999999999999998654
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
++....+++.+|.++..+|++++|...|+++++..++.
T Consensus 213 -s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 213 -SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred -CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34568899999999999999999999999999888765
No 172
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=8.9e-06 Score=71.12 Aligned_cols=299 Identities=16% Similarity=0.099 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchh-HHHHHhHhhHHHHHHHcCChhhHHHHHHHHHH-HHHH
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHA-LAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLK-IQIE 196 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~ 196 (476)
+.+.++...+..++..|++.+|.+.+...--... ..+...+ ......++++|.+++..|.|.-+..+|.++++ ....
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~-~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKE-AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccc-cCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999998876432221 1111111 11123468999999999999999999999996 3333
Q ss_pred HhcCC---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhC-----
Q 011858 197 ALGET---------DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKG----- 262 (476)
Q Consensus 197 ~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----- 262 (476)
+..+- ......++++.|..|...|+.-.|.++|.++...+..... .|..++.++....
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr--------lWLRlAEcCima~~~~l~ 388 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR--------LWLRLAECCIMALQKGLL 388 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHHhhhhhh
Confidence 21110 1224568999999999999999999999999998866443 2666666654310
Q ss_pred --------------------------------------------CHHHHHHHHHHHHHHHHH----------------cC
Q 011858 263 --------------------------------------------DYEAALEHLVLASMAMIA----------------NG 282 (476)
Q Consensus 263 --------------------------------------------~~~~A~~~~~~a~~~~~~----------------~~ 282 (476)
..+-|.-+++.++-+... .+
T Consensus 389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g 468 (696)
T KOG2471|consen 389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG 468 (696)
T ss_pred hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence 022233334444332200 00
Q ss_pred -------------------C--------Ch--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 283 -------------------Q--------DN--------EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 283 -------------------~--------~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
+ .+ ....++.+.+.+-..+|+.-.|+....+.++. +
T Consensus 469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~ 539 (696)
T KOG2471|consen 469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------A 539 (696)
T ss_pred CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------h
Confidence 0 00 12345667788888999999999999998886 3
Q ss_pred hHHHHHHHHHHHH-----HHcCChhHHHHHHHHHH------HH-------------HcCCCC--C--------CChHHHH
Q 011858 328 SVASVFVRLADLY-----HRTGKLRESKSYCENAL------RI-------------YARPVP--G--------TTAEEIA 373 (476)
Q Consensus 328 ~~~~~~~~la~~~-----~~~g~~~~A~~~~~~a~------~~-------------~~~~~~--~--------~~~~~~~ 373 (476)
....++..||.+| ..+.+..+|..++.--+ .+ .+...+ + .......
T Consensus 540 ~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~ 619 (696)
T KOG2471|consen 540 DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARG 619 (696)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhH
Confidence 4455555565555 45677777766554311 00 000000 0 0111234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
..++++|.++..+|++++|..++..+..+....... .+...--.+-..+|+...|...+++.
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~-----~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNV-----QATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccH-----HHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 567899999999999999999999999888743211 12112222334678888888776654
No 173
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.73 E-value=6e-06 Score=66.52 Aligned_cols=241 Identities=11% Similarity=0.091 Sum_probs=167.9
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 011858 178 GQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALI 257 (476)
Q Consensus 178 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 257 (476)
.+.++|+..|++++++-. +....-..++-.+..+++.+|+|++-+..|.+.+...+........ -.+.+.+-..
T Consensus 41 ~~p~~Al~sF~kVlelEg----EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEG----EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhccc----ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHH
Confidence 478899999999998842 2233445688889999999999999999999999877654432211 1112222222
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc----hHHHHH
Q 011858 258 CEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP----SVASVF 333 (476)
Q Consensus 258 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 333 (476)
-....+.+--.++|+..+...+...+.......-..+|.+|+..++|.+-.+.+++.-..++.-.|.++. ....+|
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 2344455555666777777666666666666677789999999999999888888877777665554432 335566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCch
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGG-LTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 412 (476)
..-..+|..+.+-.+-...|++++.+-..+ .+|.+..+ ...=|..+.+.|++++|-.-|-+|.+-..+.......
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 666778888888888889999999886553 34444333 3334677888999999999988888877776333344
Q ss_pred HHHHHHHHHHHHHHhh
Q 011858 413 IAGIEARMGVMFYMVG 428 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g 428 (476)
...-|..|+..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4445666777776654
No 174
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=1.3e-06 Score=67.79 Aligned_cols=206 Identities=15% Similarity=0.108 Sum_probs=137.6
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
.+.+.+..++..|..|-..|-..-|.--|.+++.+.++.. .+++.+|..+...|+|+.|.+.|...+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~---------~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP---------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL-- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH---------HHHHHHHHHHHhcccchHHHHHhhhHhcc--
Confidence 4567788899999999999999999999999999986432 56899999999999999999999999998
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+..++ .+..+. |. .+-...-+..+|...+.+-
T Consensus 129 ------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-----DPfR~L-WL---Yl~E~k~dP~~A~tnL~qR- 192 (297)
T COG4785 129 ------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-----DPFRSL-WL---YLNEQKLDPKQAKTNLKQR- 192 (297)
T ss_pred ------CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-----ChHHHH-HH---HHHHhhCCHHHHHHHHHHH-
Confidence 6777788899999999999999998887766543322 121111 11 1112344667776655432
Q ss_pred HHHHHcC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 011858 276 MAMIANG-QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCE 354 (476)
Q Consensus 276 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 354 (476)
.+... .......+-+.+| +..+ ...++++..-.+... .-......+++.+|..+...|+.++|...|+
T Consensus 193 --~~~~d~e~WG~~iV~~yLg-------kiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 193 --AEKSDKEQWGWNIVEFYLG-------KISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred --HHhccHhhhhHHHHHHHHh-------hccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 12221 1111111222222 2211 122333322211100 0022346789999999999999999999999
Q ss_pred HHHHH
Q 011858 355 NALRI 359 (476)
Q Consensus 355 ~a~~~ 359 (476)
-++.-
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 88764
No 175
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.71 E-value=5.4e-07 Score=88.07 Aligned_cols=202 Identities=18% Similarity=0.137 Sum_probs=180.0
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE 246 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 246 (476)
....|......|.+.+|.+ .-+++.+.....+.-++..+..+..++.++...|++++|+.+-.++.-+.+...+.+++.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 4566777788889999999 888888888888888999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMI--ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
....+.+++...+..++...|+..+.++..+.. ...++|..+.+..+++.++...++++.|+.+.+.|+.+.+...++
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 999999999999999999999999998877654 334678888888999999999999999999999999999999888
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
.....+.++..+++++...+++..|....+....++.... +.++.
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql-g~~hs 1138 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL-GPDHS 1138 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh-CCCcc
Confidence 8888899999999999999999999999999999888765 44443
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.71 E-value=0.00013 Score=62.36 Aligned_cols=302 Identities=16% Similarity=0.097 Sum_probs=200.6
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCch
Q 011858 80 KLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADH 159 (476)
Q Consensus 80 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 159 (476)
..|.+..-.|+ -..|...-.++-+++... ....+...-+..-...|++++|.+-|+..+..-+
T Consensus 89 StGliAagAGd-a~lARkmt~~~~~llssD---------qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE------- 151 (531)
T COG3898 89 STGLIAAGAGD-ASLARKMTARASKLLSSD---------QEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE------- 151 (531)
T ss_pred hhhhhhhccCc-hHHHHHHHHHHHhhhhcc---------chHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-------
Confidence 34444555563 666666666665543221 2233455567777889999999999998766432
Q ss_pred hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 160 ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
...--+..|-.--...|..+.|..+-+++-.. -|...++....-......|+++.|+++.+.......-.
T Consensus 152 --tRllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 152 --TRLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred --HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 11111223333345679999999999998877 45566667767777888999999999998877654333
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 240 SEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFK 319 (476)
Q Consensus 240 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 319 (476)
.+......+..+...+... ...+...|...-.++.+ ..+...-.-..-+..++..|+..++-..++.+-+.
T Consensus 222 ~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~K------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-- 292 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSL-LDADPASARDDALEANK------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-- 292 (531)
T ss_pred hhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhh------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence 3221112222222222222 22346666666666544 33444555566788999999999999999888776
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
..||... .+|....--+.++.-++++..+..- .++.......++..-+..|++..|..--+.+
T Consensus 293 ----ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 293 ----EPHPDIA-------LLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred ----CCChHHH-------HHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4466543 4444444445666667776665322 2334777888899999999999999988888
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHH
Q 011858 400 MKLLEDKPGQQSTIAGIEARMGVMFYMV-GRYEEARSSFESAIA 442 (476)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~ 442 (476)
....+.. .++..|+.+-... |+-.++..++-+++.
T Consensus 356 ~r~~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 356 AREAPRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhhCchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 8877765 6778889988766 999999999999985
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.69 E-value=1e-05 Score=61.26 Aligned_cols=159 Identities=15% Similarity=0.128 Sum_probs=119.9
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNI 297 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 297 (476)
..=+.+....-..+.+++.+.. .-.+.++......|++.+|...|++++. +........+..+++.
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~A 133 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQA 133 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHH
Confidence 3334455544445555544332 2257889999999999999999999864 3333446678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLT 377 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 377 (476)
.+..+++..|...+++..+. +.....+.....+|..+..+|.+.+|...|+.++..++. .....
T Consensus 134 qfa~~~~A~a~~tLe~l~e~------~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~ar~ 197 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEY------NPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQARI 197 (251)
T ss_pred HHhhccHHHHHHHHHHHhhc------CCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHHHH
Confidence 99999999999999998876 223334566778899999999999999999999998754 34555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 378 EISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..+..+..+|+.++|...+....+...+.
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 66788889999999988888777666554
No 178
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=7.5e-07 Score=69.03 Aligned_cols=204 Identities=15% Similarity=0.060 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
+...+..++..|..|-..|-+.-|.--|.+++.+.++ .+.+++.+|..+...|+++.|.+.|...++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~--------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----- 127 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD--------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----- 127 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC--------cHHHHHHHHHHHHhcccchHHHHHhhhHhc-----
Confidence 4456778888999999999999999999999988755 345589999999999999999999997755
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH-HHHHHHH
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC-ENALRIY 360 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~a~~~~ 360 (476)
-++..-.+..+.|..+.--|++.-|.+-+.+-.+. - +++|.. ..|..+- ...-+..+|...+ +++....
T Consensus 128 -LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D--~~DPfR-~LWLYl~---E~k~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 128 -LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---D--PNDPFR-SLWLYLN---EQKLDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred -cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---C--CCChHH-HHHHHHH---HhhCCHHHHHHHHHHHHHhcc
Confidence 45666677889999999999999998877765553 1 223322 1222221 1233556665544 3333321
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
...+....+-+.+|.+-. ...++++..-..++..-...+.++++.+|..+...|+.++|...|+-+
T Consensus 198 ------~e~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 198 ------KEQWGWNIVEFYLGKISE--------ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred ------HhhhhHHHHHHHHhhccH--------HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 112222222223333211 123333333333221122345678999999999999999999999988
Q ss_pred HH
Q 011858 441 IA 442 (476)
Q Consensus 441 ~~ 442 (476)
+.
T Consensus 264 ia 265 (297)
T COG4785 264 VA 265 (297)
T ss_pred HH
Confidence 75
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=8.5e-07 Score=74.34 Aligned_cols=106 Identities=10% Similarity=0.193 Sum_probs=89.3
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 249 ADRRLMALIC-EAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 249 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
...+..+..+ ...|+|++|+..|+..+. ..++......+++.+|.+|+..|++++|+..|+++++.+ ++++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~---~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK---KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCc
Confidence 3455566655 567999999999997654 445566667889999999999999999999999999874 4467
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
....+++.+|.++..+|++++|...|+++++.++.
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 78999999999999999999999999999998765
No 180
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.67 E-value=0.00015 Score=62.27 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=147.9
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhc---CC---CCchH
Q 011858 174 CSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM-QFDKAEELCKKTLEIHRAH---SE---PASLE 246 (476)
Q Consensus 174 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~---~~---~~~~~ 246 (476)
...+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.... .. .....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999887643211223456788999999999999 9999999999999997541 11 11134
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAM-IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
...++..++.+|...+.++...+..+ ++... ...++++... ...-.+....++.+++.+.+.+.+....-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~-~l~~l~~e~~~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALN-ALRLLESEYGNKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHhCCCCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 56788899999999988765554332 33333 2334444332 22223333478889998888888776321
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEA--LKLLQRAMKLL 403 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~a~~~~ 403 (476)
.............-+.. .....+...+...+...-.. ..+. .........-......++.... ++..+..+...
T Consensus 154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~--~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS--SEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC--ChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 11112222222212222 33456667776666543321 2221 1222222222222222222222 44444444433
Q ss_pred HhccCCC------chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 404 EDKPGQQ------STIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 404 ~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
....+.. .....++.+.|...++.++|++|..+|+-++.
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3222211 12234566779999999999999999998873
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.66 E-value=1.1e-07 Score=61.36 Aligned_cols=61 Identities=21% Similarity=0.415 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 293 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.+|..++..|++++|+..|+++++. .|....++..+|.++..+|++++|+.+|++++++.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5789999999999999999999987 788999999999999999999999999999998854
No 182
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=0.00012 Score=67.70 Aligned_cols=205 Identities=18% Similarity=0.164 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH------HHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKT------LEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLAS----- 275 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----- 275 (476)
..|-.-|.+|.+..++++|+++|++. +++..-.... .....-...|.-+...|+++.|+..|-++-
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~---evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPE---EVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcH---HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 45666777888888888888887753 4433322211 223333445677778888888888775442
Q ss_pred --------------HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Q 011858 276 --------------MAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH 341 (476)
Q Consensus 276 --------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 341 (476)
.+.....+.......|-.++.-|...|+|+.|.+.|.++-.. ..-...|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence 222222233333344556677778888888888777664221 11234566
Q ss_pred HcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHhccC-------
Q 011858 342 RTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLL------QRAMKLLEDKPG------- 408 (476)
Q Consensus 342 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~~------- 408 (476)
+.|+++.|..+-+++.. +......|...+.-+...|++.+|.+.| .++++++.+..-
T Consensus 803 k~~kw~da~kla~e~~~----------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECHG----------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred ccccHHHHHHHHHHhcC----------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence 67777777665554432 2334555666666666667766666554 344444443311
Q ss_pred ----CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 409 ----QQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 409 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
....+......+|.-|...|+.+.|...|-++
T Consensus 873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 11234456677888888888888887776554
No 183
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.63 E-value=0.00016 Score=66.84 Aligned_cols=170 Identities=19% Similarity=0.089 Sum_probs=117.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCChhHH----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANGQDNEVA----AIDVSIGNIYL----SLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
-.|+-+.+++.+.++.+ ..+.....+ ..|+.....+. ...+.+.|.+.++...+. .|....
T Consensus 200 F~gdR~~GL~~L~~~~~---~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~l 268 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK---SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSAL 268 (468)
T ss_pred cCCcHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHH
Confidence 35888888888887643 111111111 11111111111 234556677777777666 677788
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
.+...|+++...|+.++|++.|++++....+ -.......++.++.++..+.+|++|..++.+..+... +
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-----~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~------W 337 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-----WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK------W 337 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-----HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc------c
Confidence 8999999999999999999999998853322 2223456788999999999999999999998876322 3
Q ss_pred hHHHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHHHHHhcccC
Q 011858 412 TIAGIEARMGVMFYMVGRY-------EEARSSFESAIAKLRASGERK 451 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~ 451 (476)
..+...+..|.++...|+. ++|.+++.++-.+..+...+.
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~ 384 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKS 384 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCC
Confidence 3456667789999999999 888888888877776643333
No 184
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.63 E-value=2.5e-06 Score=83.70 Aligned_cols=201 Identities=17% Similarity=0.158 Sum_probs=170.7
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
..+......+......|. +.+|.+ ..+++.++..... -.+++.+..+..++.++...|++++|+.+-.++.-+..
T Consensus 930 ~~a~~~~e~gq~~~~e~~-~~~~~~-~~~slnl~~~v~~---~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~e 1004 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDG-FSEAYE-LPESLNLLNNVMG---VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISE 1004 (1236)
T ss_pred chhhhhhhhhhhhhcccc-hhhhhh-hhhhhhHHHHhhh---hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeec
Confidence 445667888888888884 899999 8888888886655 46899999999999999999999999999999999988
Q ss_pred ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011858 153 VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKT 232 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 232 (476)
...+.+++... ..+.+++...+..++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+++.+.|
T Consensus 1005 R~~g~ds~~t~-~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1005 RVLGKDSPNTK-LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred hhccCCCHHHH-HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888887664 56899999999999999999999999998887888889999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 233 LEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
+.+......+.....+.++..+++.+...+++..|+...+....++.
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 99888877766666777777777777777777777777666655554
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.61 E-value=3e-05 Score=62.79 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
+..+++-|......|++++|.+.|+... ...+..+..-.+...++..+.+.+++++|+...++-+..+ +.++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~---~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALD---SRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTHP 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCCC
Confidence 4457888888999999999999999753 4556666778889999999999999999999999999885 5578
Q ss_pred hHHHHHHHHHHHHHHcC-----C---hhHHHHHHHHHHHHHcCCCCCCChH--------HHHHHHHHHHHHHHHcCCHHH
Q 011858 328 SVASVFVRLADLYHRTG-----K---LRESKSYCENALRIYARPVPGTTAE--------EIAGGLTEISAIYESVDEPEE 391 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g-----~---~~~A~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~ 391 (476)
+...+++..|.++...= | ..+|+.-|++.+..++......+-. ..+.--..+|..|.+.|.+..
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 88888888888876532 2 3456667777777665532111111 112233457899999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHH
Q 011858 392 ALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSS 436 (476)
Q Consensus 392 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (476)
|+..++.+++..++. .....++..+..+|..+|-.++|...
T Consensus 186 A~nR~~~v~e~y~~t----~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 186 AINRFEEVLENYPDT----SAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHhccccc----cchHHHHHHHHHHHHHhCChHHHHHH
Confidence 999999998876554 34457888899999999999988754
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.61 E-value=1.1e-07 Score=61.31 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=56.6
Q ss_pred hhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
+.+|..+...|++++|+..|+++++. .|....+++.+|.++..+|++++|+.+|++++++.+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 35789999999999999999999975 6889999999999999999999999999999987654
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.60 E-value=8.2e-06 Score=65.93 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=131.3
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..++.-|......|++++|+..|+...... ...+..-.+...++.++++.+++++|+...++-+.+.+.+.+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-- 107 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-- 107 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh--
Confidence 448899999999999999999999887553 2245567789999999999999999999999999998886654
Q ss_pred hHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHcCCChhH--------------HHHHHHHHHHHHHcCCHH
Q 011858 245 LEESADRRLMALICEA-----KGDYEAALEHLVLASMAMIANGQDNEV--------------AAIDVSIGNIYLSLCRFD 305 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~ 305 (476)
..+++..|.++.. ..+...+...+...-.+....++.... +.--..+|..|.+.|.+-
T Consensus 108 ---dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 108 ---DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ---hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 4446666666553 234455555555554555555554322 223356789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHH
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY 352 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 352 (476)
.|+..++..++-+. +.+..-.++..+..+|..+|-.++|...
T Consensus 185 AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 185 AAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999988753 3466678899999999999999988654
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.59 E-value=0.00022 Score=60.60 Aligned_cols=231 Identities=29% Similarity=0.372 Sum_probs=173.7
Q ss_pred cCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011858 134 LGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLA 213 (476)
Q Consensus 134 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 213 (476)
.+.+..+...+...+...... . ........+..+...+++..+...+...+.. ...+.....+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 102 (291)
T COG0457 36 LGELAEALELLEEALELLPNS---D----LAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLG 102 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc---c----chHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHH
Confidence 456677777777776665321 0 0134788889999999999999999988864 11456677888999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 011858 214 EAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL-ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDV 292 (476)
Q Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (476)
..+...+++..++..+.+++........ . ....+. ++...|++++|...+.+++. . ..........+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~~ 171 (291)
T COG0457 103 LLLEALGKYEEALELLEKALALDPDPDL------A--EALLALGALYELGDYEEALELYEKALE-L--DPELNELAEALL 171 (291)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCCcch------H--HHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCCccchHHHHH
Confidence 9999999999999999998875544311 1 233344 89999999999999999843 1 110134455566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS-VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 293 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
..+..+...++++.|+..+.+++.. .+. ....+..++..+...+++++|...+..++...+.
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 234 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------- 234 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---------
Confidence 6677788999999999999999988 444 5778899999999999999999999999987543
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
....+..++..+...+.++++...+.+++...+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 235 NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2455666777777777899999999998877654
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.58 E-value=1.5e-06 Score=65.20 Aligned_cols=104 Identities=9% Similarity=-0.001 Sum_probs=87.3
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
.+.+.......+..|.-++..|++++|...|+-..-. ++.....+..||.++..+++|++|+..|..+..+.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455666777788899999999999999999887765 66667889999999999999999999999998875
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
... ....+..|.++..+|+.+.|+..|+.++.
T Consensus 102 ~~d---------p~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KND---------YRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cCC---------CCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 432 23467889999999999999999998887
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=3.2e-06 Score=74.82 Aligned_cols=119 Identities=21% Similarity=0.181 Sum_probs=98.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHH
Q 011858 294 IGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIA 373 (476)
Q Consensus 294 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 373 (476)
+-.++...++++.|+..+++..+. .|. +...++.++...++..+|++.+.+++...+. ..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------d~ 234 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQ---------DS 234 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---------CH
Confidence 345556678899999998887654 343 4556899999999999999999999965432 27
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
..+...+..+...++++.|+...++++.+.|... ..|..|+.+|...|++++|+..++.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f-------~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF-------ETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH-------HHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 7888899999999999999999999999998886 8999999999999999999977663
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.56 E-value=1.1e-05 Score=57.10 Aligned_cols=100 Identities=24% Similarity=0.158 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhH
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEV 287 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 287 (476)
.+-..|......|+.+.|++.|.+++.+.++. +.+|++.+..+..+|+.++|++-+++++++. .+.....
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r--------aSayNNRAQa~RLq~~~e~ALdDLn~AleLa--g~~trta 114 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPER--------ASAYNNRAQALRLQGDDEEALDDLNKALELA--GDQTRTA 114 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccc--------hHhhccHHHHHHHcCChHHHHHHHHHHHHhc--CccchHH
Confidence 34456778888999999999999999998653 4559999999999999999999999998865 3335566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
..++...|.+|..+|+.+.|..-|+.+-++
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 778899999999999999999999998876
No 192
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.56 E-value=0.00019 Score=61.73 Aligned_cols=258 Identities=13% Similarity=0.063 Sum_probs=144.9
Q ss_pred HHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhhccc-----cCCCch
Q 011858 86 IASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLG-KFEEAVPALEKAISVPDV-----TRGADH 159 (476)
Q Consensus 86 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~ 159 (476)
..+| +++.|..++.++-........ ......+..+++.|......+ ++++|..+++++.++... ....+.
T Consensus 4 ~~~~-~~~~A~~~~~K~~~~~~~~~~---~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 4 WKQG-DLDLAEHMYSKAKDLLNSLDP---DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG 79 (278)
T ss_pred hhhC-CHHHHHHHHHHhhhHHhcCCc---HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence 4567 599999999998877642111 133567788999999999999 999999999999999643 222333
Q ss_pred hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 160 ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
....+.++..++.+|...+.++.... ..++++.....+ +.....+..--.+....++.+++.+.+.+++....-.
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~ 154 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS 154 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc
Confidence 34556789999999999887764444 444555554432 2223333222333333788888888888887654311
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHH
Q 011858 240 SEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEA--VFSYQKALTV 317 (476)
Q Consensus 240 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~al~~ 317 (476)
... .-.+...+ .-+ .......+...+...+...-....+..........-......++.... ++.....++.
T Consensus 155 e~~----~~~~l~~i-~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 155 ESN----FDSILHHI-KQL-AEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred cch----HHHHHHHH-HHH-HhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 111 01111111 111 122345566666655432221111111222222221111222222222 4444444443
Q ss_pred HHhcCCCC-Cch----HHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 318 FKSSKGDN-HPS----VASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 318 ~~~~~~~~-~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
..+..+.. ... ....+.+.|...++.++|++|..+|+-++.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33322221 111 124556678888999999999999998774
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.56 E-value=4e-06 Score=77.79 Aligned_cols=136 Identities=12% Similarity=0.043 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChh--------HHHHHHHH
Q 011858 287 VAAIDVSIGNIYLSLCR---FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLR--------ESKSYCEN 355 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~ 355 (476)
.+.-++..|.-+...++ ...|+.+|++++++ +|+.+.++..++.++.....+. .+....++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34445556666655544 77999999999999 8898999998888776543332 33333333
Q ss_pred HHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHH
Q 011858 356 ALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
++.+.. .+....++..+|..+...|++++|...+++++.+.+. +..|..+|.++...|++++|++
T Consensus 410 a~al~~-------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--------~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVALPE-------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--------WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhccc-------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHcCCHHHHHH
Confidence 333211 1112467888888888999999999999999998752 2788999999999999999999
Q ss_pred HHHHHHHHHH
Q 011858 436 SFESAIAKLR 445 (476)
Q Consensus 436 ~~~~a~~~~~ 445 (476)
.|++|+.+..
T Consensus 475 ~~~~A~~L~P 484 (517)
T PRK10153 475 AYSTAFNLRP 484 (517)
T ss_pred HHHHHHhcCC
Confidence 9999997643
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.53 E-value=3.4e-06 Score=78.26 Aligned_cols=139 Identities=12% Similarity=0.020 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHH
Q 011858 247 ESADRRLMALICEAKGD---YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRF--------DEAVFSYQKAL 315 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~al 315 (476)
.+.-++..|.-+...++ +.+|+.+|+++++ .+|..+.++..++.++.....+ ..+....++++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~------ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILK------SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34445555665555444 7789999999877 4566677777777766554222 23333333333
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 316 TVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKL 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (476)
.+ ...+....++..+|..+...|++++|...+++++.+.. ...+|..+|.++...|++++|++.
T Consensus 412 al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p----------s~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 412 AL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM----------SWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred hc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 32 12344467888899999999999999999999999842 156899999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 011858 396 LQRAMKLLEDKP 407 (476)
Q Consensus 396 ~~~a~~~~~~~~ 407 (476)
|++|+.+.+..+
T Consensus 476 ~~~A~~L~P~~p 487 (517)
T PRK10153 476 YSTAFNLRPGEN 487 (517)
T ss_pred HHHHHhcCCCCc
Confidence 999999987764
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=98.53 E-value=2.1e-06 Score=64.45 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=83.8
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
++..+..|.-++..|++++|..+|+-..-. ++...+.+..||.++..+++|++|+..|..+..+......+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p- 107 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP- 107 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-
Confidence 355789999999999999999999877664 45556778999999999999999999999999887655544
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.+..|.||..+|+.+.|...|+.++.
T Consensus 108 -------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 -------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 67889999999999999999998765
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00014 Score=58.60 Aligned_cols=229 Identities=16% Similarity=0.095 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcccc----------CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHH
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVT----------RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYE 188 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 188 (476)
+....|...-.++.+...+++|..-+...-++.... .+......-+.....-|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344455555666777777787777665544433110 0111111112334556777788898888877665
Q ss_pred HHHHHHHHHhc----CC---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 011858 189 EGLKIQIEALG----ET---------DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMA 255 (476)
Q Consensus 189 ~al~~~~~~~~----~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 255 (476)
......+++.. .. ......+.+.+..++.-.|+|.-.+..+.+.++..+. ........+|
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-------~~p~L~s~Lg 219 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-------QEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-------ccHHHHHHHH
Confidence 55544333211 01 1123446778888899999999999999999884322 2233467889
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011858 256 LICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVR 335 (476)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 335 (476)
.+..+.|+.+.|..+++..-+.......-.....+..+.+.+|...+++.+|...+.+++.. ++..+.+.++
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~Nn 291 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNN 291 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhch
Confidence 99999999999999999876666666666666778889999999999999999999998887 6777888999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 336 LADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 336 la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.|.|....|+...|++.++.++.+.+.
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999988665
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=3.2e-06 Score=74.77 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=99.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 011858 212 LAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAID 291 (476)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 291 (476)
+-.++...++++.|+..+++..+..+. +...++.++...++..+|++.+.+++. ..+.....+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-----------v~~~LA~v~l~~~~E~~AI~ll~~aL~------~~p~d~~LL 237 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-----------VAVLLARVYLLMNEEVEAIRLLNEALK------ENPQDSELL 237 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHhcCcHHHHHHHHHHHHH------hCCCCHHHH
Confidence 344555678899999999987654311 245689999999999999999999874 333447788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
...+..+...++++.|+...+++.++ .|.....|..|+.+|...|++++|+..+..+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88999999999999999999999999 8999999999999999999999999776543
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.5e-06 Score=69.63 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=93.1
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcC---ChhhHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG---QVDRSIGCYEEGLK 192 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~ 192 (476)
.+|..++-|..||.+|+.+|++..|...|.+++++.++.. +.+..+|.+++.+. ...++...+++++.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---------EILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 4788889999999999999999999999999999975332 45778888777654 35678899999998
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 193 IQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
. ++....+++.||..++..|+|.+|...++..++..+....
T Consensus 222 ~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 222 L--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred c--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7 7788899999999999999999999999999988766544
No 199
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.8e-05 Score=68.13 Aligned_cols=303 Identities=13% Similarity=0.062 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHH-HHHcCChhhHHHHHHHHHHHHHHH----
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDT-CSMLGQVDRSIGCYEEGLKIQIEA---- 197 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~---- 197 (476)
.+...+...+..+.|+...++++..-.+..... .++++.+.+ |+..|.+. -....++...+....
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~---------~v~~n~av~~~~kt~~tq-~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSG---------PVLHNRAVVSYYKTGCTQ-HSVLLKELEALTADADAPG 88 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhcccccc---------ceeeehhhHHHHhcccch-hHHHHHHHHHHHHhhcccc
Confidence 344555566778889999988887766643221 123444443 44444433 333333333332221
Q ss_pred ---hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011858 198 ---LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLA 274 (476)
Q Consensus 198 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 274 (476)
-|-+.......+++.|.+++...++..|++.....+...+..... ..+.+-...-..+....+.++|+.++.-.
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~---~aa~v~~l~~~l~~~t~q~e~al~~l~vL 165 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESS---SAASVTLLSDLLAAETSQCEEALDYLNVL 165 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223334577889999999999999999888777665543322 22333344455666677778887776533
Q ss_pred HHHHHH-----cCCC-----------hhH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 275 SMAMIA-----NGQD-----------NEV-----------AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 275 ~~~~~~-----~~~~-----------~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
.++... .++. +.. ..+.......|....+...+..-.+.++.+ ..
T Consensus 166 ~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--------a~ 237 (696)
T KOG2471|consen 166 AEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--------AQ 237 (696)
T ss_pred HHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--------cC
Confidence 222211 1100 000 111122223334444444444444444444 22
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE--IAGGLTEISAIYESVDEPEEALKLLQRAMK-LLE 404 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~ 404 (476)
+....+...+..++..|++.+|.+.+... .+.+... +...+. ....++++|.++++.|.|.-+..+|.+|++ .+.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g-~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAG-GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccC-ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 44667778889999999999999877543 2222221 111111 234568999999999999999999999996 332
Q ss_pred hcc-C---------CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q 011858 405 DKP-G---------QQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASG 448 (476)
Q Consensus 405 ~~~-~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 448 (476)
+.. | .......++++.|..|...|++-.|.++|.+++..+...+
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 221 1 1123457889999999999999999999999999886653
No 200
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.50 E-value=0.00033 Score=64.84 Aligned_cols=168 Identities=16% Similarity=-0.002 Sum_probs=116.8
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHH---HHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEES---ADRRLMALICE----AKGDYEAALEHLVLASMAMIANGQDNEVAAID 291 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 291 (476)
.||-+.+++.+.++.+ ..+...+... ..|+.....+. ...+.+.|.+.+..... ..|.-...+
T Consensus 201 ~gdR~~GL~~L~~~~~----~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~------~yP~s~lfl 270 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK----SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK------RYPNSALFL 270 (468)
T ss_pred CCcHHHHHHHHHHHhc----cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH------hCCCcHHHH
Confidence 5888888888888754 2222111111 11111111111 13355666666665543 335556678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
...|.++...|+.++|++.|++++....+. ......+++.++.++..+++|++|..++.+..+.. .+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--------~WS 338 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--------KWS 338 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------ccH
Confidence 889999999999999999999988543332 33446788999999999999999999999988752 334
Q ss_pred HHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHhccC
Q 011858 372 IAGGLTEISAIYESVDEP-------EEALKLLQRAMKLLEDKPG 408 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~ 408 (476)
.+...+..|.++...|+. ++|.++|.++-....+..+
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 566777889999999999 8888888888887776434
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=0.00047 Score=59.06 Aligned_cols=267 Identities=14% Similarity=0.058 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhH-HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDY-AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 155 (476)
..+.-++.....|+ ++.|..-|+..+. +|+. ..-+..|-.--...|..+.|+.+.+++....+...
T Consensus 122 IhlLeAQaal~eG~-~~~Ar~kfeAMl~------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~ 188 (531)
T COG3898 122 IHLLEAQAALLEGD-YEDARKKFEAMLD------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP 188 (531)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHhc------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence 44555666777885 9999999887766 2332 22233333444678999999999999998876432
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGE--TCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
++....-...+..|+++.|+++.+...+... .+.+..+... .+...+.... ..+...|.....+++
T Consensus 189 ---------WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~ 256 (531)
T COG3898 189 ---------WAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEAN 256 (531)
T ss_pred ---------hHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHh
Confidence 3344555667789999999999887665422 1222222222 2222222222 345777888888887
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 234 EIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
++.+.... .-..-+..++..|+..++-..++.+-+ ...++.+...| ++.+.| +.++.-+++
T Consensus 257 KL~pdlvP--------aav~AAralf~d~~~rKg~~ilE~aWK----~ePHP~ia~lY-----~~ar~g--dta~dRlkR 317 (531)
T COG3898 257 KLAPDLVP--------AAVVAARALFRDGNLRKGSKILETAWK----AEPHPDIALLY-----VRARSG--DTALDRLKR 317 (531)
T ss_pred hcCCccch--------HHHHHHHHHHhccchhhhhhHHHHHHh----cCCChHHHHHH-----HHhcCC--CcHHHHHHH
Confidence 77654332 234458889999999999998887643 34455544332 333444 456666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc-CCHHHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV-DEPEEA 392 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A 392 (476)
+-.+. .. .++........+..-+.-|++..|..-.+.+..+.+. ..++..++.+-... |+-.+.
T Consensus 318 a~~L~-sl----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr----------es~~lLlAdIeeAetGDqg~v 382 (531)
T COG3898 318 AKKLE-SL----KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR----------ESAYLLLADIEEAETGDQGKV 382 (531)
T ss_pred HHHHH-hc----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch----------hhHHHHHHHHHhhccCchHHH
Confidence 65542 22 5677888899999999999999999988888877544 45778888888776 999999
Q ss_pred HHHHHHHHHH
Q 011858 393 LKLLQRAMKL 402 (476)
Q Consensus 393 ~~~~~~a~~~ 402 (476)
..++.+++.-
T Consensus 383 R~wlAqav~A 392 (531)
T COG3898 383 RQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.50 E-value=4.2e-05 Score=58.10 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
.-.+.+|..+...|++.+|..+|++++.- -.......+..+++..+..+++..|...+++..+.-+.-
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~----- 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF----- 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-----
Confidence 34577999999999999999999999863 234557788999999999999999999999988764321
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
........+|.++..+|++.+|...|+.++...+.. ..-...+..+.++|+.++|..-+....+....
T Consensus 158 --r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 158 --RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP--------QARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred --CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 224456778999999999999999999999987765 34445688889999999888877666654443
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=1.7e-06 Score=70.56 Aligned_cols=106 Identities=12% Similarity=0.176 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
.++.+.-++..|+|..|...|..-++.+ ++......+++.||++++.+|+++.|...|..+.+-+++ .+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------SP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------CC
Confidence 6778888899999999999999988874 556778999999999999999999999999999997665 34
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 371 EIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
...+.++.+|.+...+|+.++|...|+++++.++...
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 4578999999999999999999999999999887763
No 204
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.49 E-value=2.8e-05 Score=62.77 Aligned_cols=241 Identities=13% Similarity=0.080 Sum_probs=165.5
Q ss_pred CcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhH
Q 011858 91 GPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQL 170 (476)
Q Consensus 91 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 170 (476)
.+++|+.-|++.+++-.. ....-..++-.+..+++.+|+|++-...|.+.+.........+...- +...+
T Consensus 42 ~p~~Al~sF~kVlelEgE-------KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK---sIN~I 111 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGE-------KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK---SINSI 111 (440)
T ss_pred CHHHHHHHHHHHHhcccc-------cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH---HHHHH
Confidence 488999999999886311 23445678889999999999999999999999877654332222221 12222
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc----hH
Q 011858 171 GDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS----LE 246 (476)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~ 246 (476)
-..-....+.+--..+|+..++..+.. .+......+-..+|.+|+..|+|.+-.+.+.+.-..+....+.+. ..
T Consensus 112 lDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 112 LDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 222233445555566777777766553 334444556678999999999999988888887777765544322 22
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
...+|..-...|..+.+-.+-..+|++++.+-...+.+.....+.-.=|..+.+.|+|++|-.-|-+|.+-+.+...+ .
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-R 268 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-R 268 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-c
Confidence 334455556778888888888889999988777777666666666677888999999999999999988887765311 2
Q ss_pred chHHHHHHHHHHHHHHcC
Q 011858 327 PSVASVFVRLADLYHRTG 344 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g 344 (476)
.....-|..|+..+.+.|
T Consensus 269 RttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 269 RTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 223344556677776654
No 205
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.00057 Score=57.33 Aligned_cols=300 Identities=14% Similarity=0.133 Sum_probs=192.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCC-CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRG-ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
...+.......+.++++..+.+.+........ +......-.....+|..+...|+..+-..........+... ..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~Ka 84 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKA 84 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhH
Confidence 34455555666778888888888775321111 11111112457899999999999988777766665554432 122
Q ss_pred hHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 204 RVGETCRYLAEAHV-QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 204 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
..+.....+-.... ..+..+.-+..+..+++........ ...-..-..+..+|...++|.+|+......+.-+++.+
T Consensus 85 kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt--FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD 162 (411)
T KOG1463|consen 85 KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT--FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD 162 (411)
T ss_pred HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 33334444433333 3345667777788887776654432 22233345678899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSV-ASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+......++..-...|+...+..+|...+..|-......+. +|.. +..-..=|.++....+|..|..||-+|.+-+.
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 99988889999999999999999999998888776555432 2222 23333346666777899999999999999877
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHhccCCCchHHHHHHHHHHHHHH--hhcHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ--RAMKLLEDKPGQQSTIAGIEARMGVMFYM--VGRYEEARSSF 437 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~ 437 (476)
.. .++.....++..+-.+-...+..++--..+. .+++.. +.. ..+...++..+.. +.+|+.|+.-|
T Consensus 241 s~---~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~----g~~---i~AmkavAeA~~nRSLkdF~~AL~~y 310 (411)
T KOG1463|consen 241 SL---DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA----GRD---IDAMKAVAEAFGNRSLKDFEKALADY 310 (411)
T ss_pred cc---CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc----Ccc---hHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 64 2333444455555555555666665544443 233311 211 2555666666653 45777777766
Q ss_pred HHHH
Q 011858 438 ESAI 441 (476)
Q Consensus 438 ~~a~ 441 (476)
..-+
T Consensus 311 k~eL 314 (411)
T KOG1463|consen 311 KKEL 314 (411)
T ss_pred HHHH
Confidence 6544
No 206
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=6.3e-06 Score=63.17 Aligned_cols=139 Identities=18% Similarity=0.209 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCCh
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA 369 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 369 (476)
.+-.-|+-++..|+|++|..-|..|++++.... ......+|.+.|.++.+++.++.|+..+.+++++.+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-------- 165 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-------- 165 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc--------
Confidence 344567888999999999999999999976552 244577889999999999999999999999999843
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 370 EEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
....++...+.+|.++.++++|++-|++.++..+... .+...++++--...+..++ +-+.++..++.+|+
T Consensus 166 -ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-------ear~~i~rl~~~i~ernEk--mKee~m~kLKdlGN 235 (271)
T KOG4234|consen 166 -TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-------EAREAIARLPPKINERNEK--MKEEMMEKLKDLGN 235 (271)
T ss_pred -hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-------HHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHhhh
Confidence 3467788899999999999999999999999887763 3333333333333333332 23445555555554
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=1.6e-06 Score=70.68 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 124 LHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
++..+.-++..|+|.+|...|..-++..+...-. ..+++.||.+++.+|+|++|...|..+.+-++ +++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-----~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-----KSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC-----CCC
Confidence 7899999999999999999999999988743311 25699999999999999999999999988654 367
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
...++++.+|.+...+|+.++|...++++++.++..
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 788999999999999999999999999999877653
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.46 E-value=0.00046 Score=58.61 Aligned_cols=232 Identities=25% Similarity=0.310 Sum_probs=169.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 011858 177 LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL 256 (476)
Q Consensus 177 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 256 (476)
.+.+..+...+...+..... ..........+..+...+++..+...+...+.. .........+..++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 34555555555555544111 023567788889999999999999999998875 011234556788899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011858 257 ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGN-IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVR 335 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 335 (476)
.+...+++..++..+.+++..... . .......+. ++...|+++.|...+.+++.... ........+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~ 172 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPD----P--DLAEALLALGALYELGDYEEALELYEKALELDP-----ELNELAEALLA 172 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCC----c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CccchHHHHHH
Confidence 999999999999999887542211 1 222233334 89999999999999999965310 01245666777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHH
Q 011858 336 LADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAG 415 (476)
Q Consensus 336 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 415 (476)
.+..+...++++.|+..+.+++...... ....+..++..+...+++++|+..+..++...+.. ..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~ 237 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-------AE 237 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-------HH
Confidence 7777889999999999999999986441 36678899999999999999999999999887762 25
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 416 IEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
.+..++..+...++++++...+.+++.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5667777777777899999999998876543
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00025 Score=57.45 Aligned_cols=145 Identities=21% Similarity=0.205 Sum_probs=70.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF 333 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 333 (476)
-+.+|..-|++++|++...... ...+...--.++.++.+++-|...+++..++.+ -.++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~-----------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~tL 172 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE-----------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE----------DATL 172 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHH
Confidence 3555666666666666554321 111122223455555556666655555555411 1223
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 334 VRLADLYHR----TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 334 ~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
..||..+.. .+++.+|.-+|++.-+... .....+..++.++..+|++++|...++.++....+.+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~---------~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-- 241 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTP---------PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP-- 241 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccC---------CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH--
Confidence 333333322 2234555555554433211 1234555566666666666666666666665444443
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
.++.++-.+-...|...++..
T Consensus 242 -----etL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 242 -----ETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred -----HHHHHHHHHHHHhCCChHHHH
Confidence 555555555555555544443
No 210
>PRK11906 transcriptional regulator; Provisional
Probab=98.41 E-value=9.4e-06 Score=71.57 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=116.4
Q ss_pred HHHHHHHHHHcCC--CcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhc---------CChhHHHHHHHH
Q 011858 78 LLKLARDTIASGE--GPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSL---------GKFEEAVPALEK 146 (476)
Q Consensus 78 ~~~~a~~~~~~g~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~ 146 (476)
++..|...+..+- ..+.|+.+|.+|+... ..+|+.+.++..++.+++.. .+..+|.+..++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~--------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS--------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc--------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 3555655554441 2345555666665210 14688888999999988754 234577788888
Q ss_pred hhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHH
Q 011858 147 AISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAE 226 (476)
Q Consensus 147 al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 226 (476)
|+++.+ .++ .++..+|.+....++++.|+..|++|+.+ +|..+.+++..|.+....|+.++|.
T Consensus 330 Aveld~-----~Da----~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 330 VSDITT-----VDG----KILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHhcCC-----CCH----HHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 888764 232 45899999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 227 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
+.+++++++.+..- +.....+-.-.+.....++|+.+|-+
T Consensus 393 ~~i~~alrLsP~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 393 ICIDKSLQLEPRRR-------KAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHhccCchhh-------HHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999998875522 11122222212334566777776643
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1e-05 Score=66.96 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=91.1
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD---EPEEALKLLQRAMKL 402 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~ 402 (476)
+|....-|..||.+|..+|+++.|...|.+++++..+. ...+..+|.++..+. ...++...|++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n---------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN---------PEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999996542 556777777776543 467899999999998
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 403 LEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.+.+. .+++.||..++..|+|.+|...++..++.....
T Consensus 223 D~~~i-------ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 223 DPANI-------RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 87775 888999999999999999999999998765444
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=4.3e-06 Score=64.05 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
+..+-.-|.-++..|+|.+|..-|..|+.+++...... ...+|.+.|.++.+++.++.|+..+.+++++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~----rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEE----RSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHH----HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 44566678899999999999999999999998554322 2245899999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
+|....++...|.+|..+..|++|+.-|.+.++..+.
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 6777888999999999999999999999999987765
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.39 E-value=1.1e-05 Score=59.29 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
...++.-|.-.+..|+|++|++.|+.....+ +..+....+...|+.+|...+++++|+..+++.+++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP------ 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP------ 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------
Confidence 4556788889999999999999998876653 33455678899999999999999999999999999854
Q ss_pred ChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHHHhc
Q 011858 368 TAEEIAGGLTEISAIYESVDE---------------PEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~~~~~ 406 (476)
.++.+..+++..|.++..+.. ..+|...|++.+...|++
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 456677788888888888766 778888888888877765
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00071 Score=54.92 Aligned_cols=250 Identities=14% Similarity=0.099 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.++.+- .++-.| +|.+++...++.-. .+...+....+.+.|..+|++..-+.-...+
T Consensus 11 ~LF~iR-n~fY~G-nyq~~ine~~~~~~------------~~~~~e~d~y~~raylAlg~~~~~~~eI~~~--------- 67 (299)
T KOG3081|consen 11 ELFNIR-NYFYLG-NYQQCINEAEKFSS------------SKTDVELDVYMYRAYLALGQYQIVISEIKEG--------- 67 (299)
T ss_pred hHHHHH-HHHHhh-HHHHHHHHHHhhcc------------ccchhHHHHHHHHHHHHcccccccccccccc---------
Confidence 344443 344456 56666555444322 2244556677888888888876554433222
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
...+. .+...++.....-++.++-+.-..+-+.. ............-|.++...|++++|++.......+-
T Consensus 68 ~~~~l---qAvr~~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE 138 (299)
T KOG3081|consen 68 KATPL---QAVRLLAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE 138 (299)
T ss_pred cCChH---HHHHHHHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH
Confidence 11111 23455555555555555444433333222 1122233445566788999999999998887743221
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 011858 237 RAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS----LCRFDEAVFSYQ 312 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 312 (476)
+. ..--.++.++.+++-|.+.+++..++. + -.++..||..+.. .+++.+|.-+|+
T Consensus 139 -----------~~--Al~VqI~lk~~r~d~A~~~lk~mq~id----e----d~tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 139 -----------AA--ALNVQILLKMHRFDLAEKELKKMQQID----E----DATLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred -----------HH--HHHHHHHHHHHHHHHHHHHHHHHHccc----h----HHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 22 222567778888888888888764422 2 1233444444433 345677777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHH
Q 011858 313 KALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEA 392 (476)
Q Consensus 313 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 392 (476)
+.-+. .+.....+..++.++..+|++++|...++.++....+ ...++.++..+-...|...++
T Consensus 198 E~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---------dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 198 ELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---------DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---------CHHHHHHHHHHHHHhCCChHH
Confidence 65443 4556788999999999999999999999999986433 267788888888888888776
Q ss_pred HHHH
Q 011858 393 LKLL 396 (476)
Q Consensus 393 ~~~~ 396 (476)
..-+
T Consensus 261 ~~r~ 264 (299)
T KOG3081|consen 261 TERN 264 (299)
T ss_pred HHHH
Confidence 5544
No 215
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00046 Score=56.45 Aligned_cols=231 Identities=12% Similarity=0.062 Sum_probs=161.2
Q ss_pred hhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHH
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEE 247 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 247 (476)
..+++-....+++++|+..|.+.+...-..-.....+.-.+...++.+|...|++..-.+......+...+...+ ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~---k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP---KI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch---hH
Confidence 456777778889999999998887641110000012334577899999999999988777777666666555443 22
Q ss_pred HHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 248 SADRRLMAL-ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 248 ~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
..+...+-. .-.....++.-++.+...++.+............-..+..+++..|.|.+|+....-.+..+++. ++.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCc
Confidence 222222222 22334567888888888877776555545555566778899999999999999999999888887 667
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE-IAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
+....++..-..+|....+..++...+..|...+.... -++. .+..-..-|..+..-.+|..|..+|-++++-+..
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 77788888889999999999999988888877765542 2332 2333333456666778899999999888876554
Q ss_pred c
Q 011858 406 K 406 (476)
Q Consensus 406 ~ 406 (476)
.
T Consensus 239 l 239 (421)
T COG5159 239 L 239 (421)
T ss_pred c
Confidence 3
No 216
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00086 Score=54.93 Aligned_cols=230 Identities=12% Similarity=0.069 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
..+++-....+++++|+..|.+.+.-.-... .......-.+...++.+|...|++..--+......+..... ..+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~d-ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKD-EKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChh-hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchh
Confidence 3466667788899999999999887621111 11111111347899999999999987777766666655543 2344
Q ss_pred HHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 205 VGETCRYLAEAH-VQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 205 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
...+...+-.-+ .....++.-+..+...++...+.... ......-..+..++...|+|.+|+....-.+.-+++.++
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~--fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK--FLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 444444443332 33456777888888887776554332 122233456788899999999999999999888899999
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS-VASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+....++..-..+|....+..++...+..|-..+...+. +|. .+..-..-|..++...+|..|..+|-++++-+..
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 9999999999999999999999999888888777665542 122 1222233355667778999999999999987665
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=98.36 E-value=1.4e-05 Score=70.51 Aligned_cols=162 Identities=16% Similarity=0.134 Sum_probs=117.6
Q ss_pred HhhHHHHHHHcCC---hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHH
Q 011858 167 YMQLGDTCSMLGQ---VDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQA---------MQFDKAEELCKKTLE 234 (476)
Q Consensus 167 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~ 234 (476)
++..|......+. .+.|+.+|.+++... .-+|..+.+|..++.+++.. .+..+|.+..+++++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 4666666655543 456778888888321 12788899999999988764 234566666666666
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
+.+ ..+.++..+|.+....++++.|...|++|+. -.|..+.+++..|.+....|+.++|.+.++++
T Consensus 333 ld~--------~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 333 ITT--------VDGKILAIMGLITGLSGQAKVSHILFEQAKI------HSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cCC--------CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543 2356688999999999999999999999966 56788899999999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 011858 315 LTVFKSSKGDNHPSVASVFVRLADL-YHRTGKLRESKSYCEN 355 (476)
Q Consensus 315 l~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 355 (476)
+++ +|....+-...-.+ .+-....++|+.+|-+
T Consensus 399 lrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 399 LQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred hcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 998 55544333222222 2334556777777654
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.33 E-value=9.3e-06 Score=59.63 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
...++.-|...+..|+|++|++.|+......+... -. -.+.+.++.+|+..+++++|+..+++-+++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~--ya----~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP----- 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE--YA----EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP----- 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc--cc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----
Confidence 45688899999999999999999999988876322 11 14589999999999999999999999999854
Q ss_pred CchhHHHHHHHHHHHHHHhcc---------------HHHHHHHHHHHHHHHHhc
Q 011858 201 TDPRVGETCRYLAEAHVQAMQ---------------FDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~ 239 (476)
.++....+++..|.+++.+.. ..+|...|++.++.+++.
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 478888899999999998876 777888888887776653
No 219
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.30 E-value=0.0035 Score=59.83 Aligned_cols=229 Identities=18% Similarity=0.103 Sum_probs=139.0
Q ss_pred HcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHh
Q 011858 87 ASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSG 166 (476)
Q Consensus 87 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 166 (476)
..+ ++.+|+....+.++ .+|+..-+...-|..+.++|+.++|..+++..-.... .+. ..
T Consensus 21 d~~-qfkkal~~~~kllk-----------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~-----~t 79 (932)
T KOG2053|consen 21 DSS-QFKKALAKLGKLLK-----------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDD-----LT 79 (932)
T ss_pred hhH-HHHHHHHHHHHHHH-----------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC----Cch-----HH
Confidence 344 46666666666555 3566666777888999999999999966665433322 111 34
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE 246 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 246 (476)
+..+-.+|..+|++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+. ++++++..+...
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~--- 144 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRA--- 144 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCccc---
Confidence 778889999999999999999999986 444 45666777788888887765444 344444433321
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 247 ESADRRLMALICEAKGDYEAALE-----HLVLASMAM-IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~-----~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 320 (476)
...|..+..+.......++... +-++..... ...|.-...+.+.. .-.++..+|++++|.+.+..-+.- .
T Consensus 145 -yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k~~eal~~l~~~la~--~ 220 (932)
T KOG2053|consen 145 -YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGKYQEALEFLAITLAE--K 220 (932)
T ss_pred -chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHH--h
Confidence 1224444555555544444443 112222111 12222222222222 234667789999999998544332 2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 321 SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
. ..........-...+...+++.+-.+...+.+..
T Consensus 221 l----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 221 L----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred c----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 1 2333344445567777888888888777777765
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00026 Score=57.16 Aligned_cols=179 Identities=15% Similarity=0.042 Sum_probs=130.3
Q ss_pred HHHHHHHhccHHHHHHHHHH-------HHHHHHhcCCCCc------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 212 LAEAHVQAMQFDKAEELCKK-------TLEIHRAHSEPAS------LEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~-------al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
.|.+....|+..+.+.-+.. .+...+....+.+ .....+.+.+..++.-.|+|.-....+.+.++
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~-- 205 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK-- 205 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH--
Confidence 34555566666655544433 3333333332211 12244567778888889999999999988765
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
.+++........+|.+..+.|+.+.|..++++.-+..... ++......+..+.+.+|.-.+++.+|...+.+++.
T Consensus 206 ---~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 206 ---YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred ---hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 2344556667889999999999999999999877665555 33445567788889999999999999999999887
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
...+ .+.+.++.|.|..-.|+..+|++.++.++...|..
T Consensus 281 ~D~~---------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 281 MDPR---------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred cCCC---------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 6433 25677888999999999999999999998887665
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=4.3e-06 Score=73.51 Aligned_cols=68 Identities=15% Similarity=-0.005 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAA---IDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
.+.....++++|.+|...|++++|+..|+++++ ..+.... +++++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455566666666666666666666665544 4555442 3556666666666666666666665554
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.24 E-value=8.3e-06 Score=71.78 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=63.3
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
.|.....++++|.+|..+|++++|+..|++++++.+. +.....+++++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999998543 3333367999999999999999999999999997
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=1.1e-05 Score=53.33 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=56.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 294 IGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 294 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
|..+|...+++++|+.++++++.+ +|.....+...|.++..+|++++|+..++++++..++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356899999999999999999999 7888999999999999999999999999999988543
No 224
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.20 E-value=7.6e-06 Score=68.24 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
-..|+-|+.+|.|++|+.+|.+++.. .|.....+.+.+..|+++..|..|...+..++.+.+ .
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---------~ 163 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---------L 163 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---------H
Confidence 45788999999999999999999988 777888999999999999999999999999998853 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+..+|...+.+-..+|+..+|.+-++.++++-++.
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 57889999999999999999999999999987765
No 225
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=5.9e-06 Score=53.79 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=50.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
++..|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++...+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999998 788899999999999999999999999999988743
No 226
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0018 Score=54.55 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=162.0
Q ss_pred hhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP----RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
...+.......++++++..+.+.+...... ..++ ..-.+...++..+...|+..+-.................
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka- 84 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA- 84 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH-
Confidence 344444555666788888888777642211 0111 223467889999999999988877777776666554433
Q ss_pred chHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 011858 244 SLEESADRRLMALIC-EAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSK 322 (476)
Q Consensus 244 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 322 (476)
..+.....+-... ..-+..+.-++.+..+++...........-..-..+..+|...++|.+|+......+...++.
T Consensus 85 --kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl- 161 (411)
T KOG1463|consen 85 --KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL- 161 (411)
T ss_pred --HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence 2233333333332 233456677778888877776665555555566778999999999999999999999988888
Q ss_pred CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 323 GDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 323 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
++......++..-..+|....+..+|...+..|........ -.+...+..-..-|.++....+|..|..||-+|.+-
T Consensus 162 -DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 162 -DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred -ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 66667777888888999999999999999988887766543 122223344444567777779999999999999988
Q ss_pred HHhccCCC
Q 011858 403 LEDKPGQQ 410 (476)
Q Consensus 403 ~~~~~~~~ 410 (476)
+... +++
T Consensus 239 f~s~-~~~ 245 (411)
T KOG1463|consen 239 FDSL-DDD 245 (411)
T ss_pred cccc-CCc
Confidence 7766 444
No 227
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.17 E-value=0.0049 Score=55.61 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=151.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHH
Q 011858 127 LAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVG 206 (476)
Q Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 206 (476)
.+.+..+.|+++.-..+....-.. .. ...+..+......++++++..+.+++.......+........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--------~~----~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~ 71 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--------SP----EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESY 71 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--------Ch----hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 356677889998833333322111 11 123444455558899999999999988776543222111111
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE 286 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 286 (476)
...+..-..+....+.+++..+.......... .......|.. +.-....+++--...+.-=..++........
T Consensus 72 ~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~-----~~~l~~~W~~--Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~ 144 (352)
T PF02259_consen 72 QRAYPSLVKLQQLVELEEIIELKSNLSQNPQD-----LKSLLKRWRS--RLPNMQDDFSVWEPILSLRRLVLSLILLPEE 144 (352)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcccHHH-----HHHHHHHHHH--HHHHhccchHHHHHHHHHHHHHHhcccchhH
Confidence 11111112222333444444443221100000 0000011111 1111122222222222111111111233566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCCC-
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR-IYARPV- 364 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~- 364 (476)
....+...+.+..+.|+++.|...+.++....... ......+....+.+....|+..+|+..++..+. ......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 77889999999999999999999999887752111 122466777889999999999999999988888 222210
Q ss_pred -----------------------CCCChHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhccCCCchHHH
Q 011858 365 -----------------------PGTTAEEIAGGLTEISAIYESV------DEPEEALKLLQRAMKLLEDKPGQQSTIAG 415 (476)
Q Consensus 365 -----------------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 415 (476)
........+.++..+|...... ++.++++..|.++.++.+... .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------k 293 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE-------K 293 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH-------H
Confidence 1222345567788888887777 889999999999999887764 5
Q ss_pred HHHHHHHHHHHh
Q 011858 416 IEARMGVMFYMV 427 (476)
Q Consensus 416 ~~~~l~~~~~~~ 427 (476)
++..+|..+...
T Consensus 294 ~~~~~a~~~~~~ 305 (352)
T PF02259_consen 294 AWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 228
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.16 E-value=0.00082 Score=46.93 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=87.3
Q ss_pred HHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 205 VGETCRYLAEA--HVQAMQFDKAEELCKKTLEIHRAHSEPASL----EESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 205 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
++.+|..|+.. ...-|-|++|...+++++++.......... ..+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45556555544 445688999999999999998877654322 346778889999999999999999999999988
Q ss_pred HHcCCC-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 279 IANGQD-----NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 279 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
...+.- ..+..+.++.+..+...|+.++|+..|+.+-++..+..|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 765442 2344556788999999999999999999999987766443
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00072 Score=56.75 Aligned_cols=166 Identities=11% Similarity=-0.037 Sum_probs=117.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 011858 212 LAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAID 291 (476)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 291 (476)
-+.+.+..|++.+|....++.++-++... .++..--..++..|+.+.-...+++.+.. -..+.|....+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVH 178 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHH
Confidence 34455667888888888888887665422 22344455677778887777777765331 144555666777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
..++..+...|-|++|++..++++++ ++....+...++.++...|++.++.++..+.-...+. ....
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~ml 245 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWML 245 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHH
Confidence 77888888899999999999999888 6777888888888888889999998888776655432 1122
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
...-|...+.++...+.|+.|++.|..-+
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 23345567778888888999988887543
No 230
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.13 E-value=1.1e-05 Score=53.36 Aligned_cols=60 Identities=33% Similarity=0.517 Sum_probs=54.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
|..+|...+++++|++++++++.+.+..+ ..+...|.++..+|++++|+..++++++..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDP-------ELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35688999999999999999999988875 7888999999999999999999999996544
No 231
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.1e-05 Score=52.47 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=52.2
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 011858 259 EAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLAD 338 (476)
Q Consensus 259 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 338 (476)
...|++++|++.|++++.. .|....++..+|.+|...|++++|...+++++.. .+.....+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHHhc
Confidence 5689999999999998763 3455777889999999999999999999998877 5555555555544
No 232
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.0029 Score=49.01 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQ 410 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 410 (476)
.....++..+...|++++|+..++.++.... +......+-..++.+...+|++++|+..+.... ..
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTK------DENLKALAALRLARVQLQQKKADAALKTLDTIK--------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccch------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------cc
Confidence 4456678888999999999999999986532 333445677889999999999999998877542 22
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
..........|.++...|+.++|+..|+++++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 2233455678999999999999999999999865
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0055 Score=51.67 Aligned_cols=168 Identities=11% Similarity=-0.049 Sum_probs=126.9
Q ss_pred hhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHH
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEE 247 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 247 (476)
..-+.+....|++.+|-...++.++- .|....++..--.+++..|+.+.-...+++.+.... .+.+..
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn----~dlp~~ 174 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN----ADLPCY 174 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC----CCCcHH
Confidence 34456677889999998888888875 455555566666778888998888888887764321 122345
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
..+...++..+...|-|++|.+..+++++ .++....+....+.++...|++.++.++..+.-...+.. .-
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralq------iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~m 244 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQ------INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WM 244 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhcc------CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hH
Confidence 66677788889999999999999998866 345567777889999999999999999988876655432 33
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
....-|...+.++...+.|+.|++.|+.-+
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 334556777888999999999999998654
No 234
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.01 E-value=0.00082 Score=52.95 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChh
Q 011858 268 LEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLR 347 (476)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 347 (476)
++-++.-++..+..........++..+|..|...|++++|++.|.++.+.+. ........+.++..+....+++.
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHH
Confidence 3344444444455556677888999999999999999999999999887642 23456788889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 348 ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 348 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
....++.++..+... +.+..........-|..+...++|.+|-..|-.+...+
T Consensus 91 ~v~~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 999999999998876 33444444555666777788999999999988776544
No 235
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.01 E-value=7.4e-05 Score=62.57 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 124 LHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
+-..|+-|+.+|.|++|+.+|.+++...+... ..+.+.+..|+.+..|..|..-+..++.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---------V~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---------VYHINRALAYLKQKSFAQAEEDCEAAIAL--------DK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCc---------cchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hH
Confidence 44678999999999999999999999876322 23789999999999999999999999998 55
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
....+|...+..-..+|...+|.+-++.++++-+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 67889999999999999999999999999998766
No 236
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.00 E-value=0.00058 Score=53.78 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011858 308 VFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD 387 (476)
Q Consensus 308 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (476)
++-++.-++-++... .......++..+|..|.+.|+.++|++.|.++.+... ........+..+..+....+
T Consensus 16 ~~~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~------~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 16 LEKLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT------SPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC------CHHHHHHHHHHHHHHHHHhC
Confidence 344444444444432 2456678899999999999999999999999887643 34567888999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 388 EPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 388 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
++.....++.++..+.... ++..........-|..+...++|.+|...|-.+..-+
T Consensus 88 d~~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 88 DWSHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred CHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999999988775 5555555555667788888999999999988877544
No 237
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.95 E-value=2.5e-05 Score=44.93 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
+.++.++|.+|...|++++|+.++++++.+.++.+|.++|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46788999999999999999999999999999998888763
No 238
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.94 E-value=0.0028 Score=44.39 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=85.9
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 288 AAIDVSI--GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH----PSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 288 ~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+.+|..| |.-.+.-|-|++|...+++++++.+.+..... -..+.++..|+..+..+|+|++++...++++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3344444 34455678999999999999999877643321 13467888999999999999999999999998876
Q ss_pred CCCC--CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 362 RPVP--GTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 362 ~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
+-.. .+.-...+.+.++.+..+...|+.++|+..|+.+-++..+..|.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 5320 12223345566778899999999999999999999988766443
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.93 E-value=0.004 Score=54.63 Aligned_cols=207 Identities=15% Similarity=0.099 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 011858 179 QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALIC 258 (476)
Q Consensus 179 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 258 (476)
.+..+.....+.+...+..++.......++..++-..|....+|+.-+++.+..-.+- .... .....+....|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-~~~~---~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-TCDV---ANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-ccch---hcchHHHHHHHHHH
Confidence 3344444555555555554443333445667778888999999998888877664441 1111 12334456678888
Q ss_pred HH---hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 259 EA---KGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSL---------CRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 259 ~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
.+ .|+.++|+..+..++.. .....+.++..+|.+|-.. ...++|+.+|.++.++ .
T Consensus 190 nRrn~~gdre~Al~il~~~l~~-----~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~ 256 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLES-----DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------E 256 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------C
Confidence 88 89999999999876431 2233355677777777542 2356777777777776 2
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HH---HcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENAL-RI---YARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
.....-.|++.++...|...+...-+++.. .+ ..+.. ..........+..++.+..-.|++++|.+.+++++.+
T Consensus 257 -~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg-~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 257 -PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG-SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred -ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 233455667777777776444433333322 11 11110 1122223445566777788899999999999999977
Q ss_pred HH
Q 011858 403 LE 404 (476)
Q Consensus 403 ~~ 404 (476)
.+
T Consensus 335 ~~ 336 (374)
T PF13281_consen 335 KP 336 (374)
T ss_pred CC
Confidence 43
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.92 E-value=0.0016 Score=58.14 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=129.8
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 011858 174 CSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRL 253 (476)
Q Consensus 174 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 253 (476)
.....+...-++.-++|+++ +++.+.+|..|+.-. ..-..+|+++++++++..+......
T Consensus 178 AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s---------- 237 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKS---------- 237 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchh----------
Confidence 34556777888888899988 567777887776532 3347899999999998876643321
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF 333 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 333 (476)
......|..-+.. . ..+......+...+|.+..++|+.++|++.++..++.. ...+...+.
T Consensus 238 --~~~~~~g~~~e~~--~---------~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~Ir 298 (539)
T PF04184_consen 238 --QFLQHHGHFWEAW--H---------RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIR 298 (539)
T ss_pred --hhhhcccchhhhh--h---------ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHH
Confidence 0011111111110 0 11222234455678888889999999999888887762 122456788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH-cCC---------------HHHHHHHHH
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES-VDE---------------PEEALKLLQ 397 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~ 397 (476)
.+|..++...+.|.++...+.+--++. -+..+.+.+.-+.+-.+ .++ -..|.+.+.
T Consensus 299 enLie~LLelq~Yad~q~lL~kYdDi~--------lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~ 370 (539)
T PF04184_consen 299 ENLIEALLELQAYADVQALLAKYDDIS--------LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIH 370 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccc--------CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHH
Confidence 888888999999888887777643221 11223333333332221 111 124667788
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 398 RAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
+|++..+..+..-... ..+..-=.-+.+.|+ .||+.|---.++..+...+
T Consensus 371 RAvefNPHVp~YLLe~-K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veG 420 (539)
T PF04184_consen 371 RAVEFNPHVPKYLLEM-KSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEG 420 (539)
T ss_pred HHHHhCCCCchhhhcc-CCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHh
Confidence 8887766554200000 000001123445555 6777776666666555433
No 241
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.91 E-value=0.00028 Score=57.28 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=83.0
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC-----CchHHHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANG-QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN-----HPSVASVF 333 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 333 (476)
....+++|++.|..|+......+ .+...+.++..+|++|...|+.+....++++|++.+.+.+... ..+...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34578889999998888777554 4557789999999999999999888888888888887765332 23456788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+.+|.++.+.|++++|..+|.+++..-.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999988643
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.87 E-value=0.0096 Score=53.35 Aligned_cols=138 Identities=15% Similarity=0.063 Sum_probs=83.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhH
Q 011858 91 GPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQL 170 (476)
Q Consensus 91 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 170 (476)
++++-++...+|+++ .++.+.+|..|+.-. .....+|+.+|+++++..+...+...
T Consensus 183 np~aRIkaA~eALei-----------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~----------- 238 (539)
T PF04184_consen 183 NPQARIKAAKEALEI-----------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQ----------- 238 (539)
T ss_pred CHHHHHHHHHHHHHh-----------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhh-----------
Confidence 689999999999997 455666777777532 23468899999999887653322111
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 011858 171 GDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESAD 250 (476)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 250 (476)
.....|..-+.. .. .+......+-..+|.+..++|+.++|++.++..++..+.. ....+
T Consensus 239 --~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------~~l~I 297 (539)
T PF04184_consen 239 --FLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------DNLNI 297 (539)
T ss_pred --hhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------chhhH
Confidence 111111111110 00 1122234455667777777888888887777777655321 22345
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
+.++..++...+.|.++...+.+
T Consensus 298 renLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 298 RENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 67777777777777777776664
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00026 Score=56.32 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
+.-+..-|..++....|+.|+..|.+++.+.+.. +..+.+.+.++++..+++....-.++++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------~~Y~tnralchlk~~~~~~v~~dcrralql------- 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------ASYYTNRALCHLKLKHWEPVEEDCRRALQL------- 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------chhhhhHHHHHHHhhhhhhhhhhHHHHHhc-------
Confidence 3345567888888899999999999999987632 245889999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 242 (476)
.+..+..++.+|.+......|++|+..+.++..+.......
T Consensus 74 -~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 74 -DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred -ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 78889999999999999999999999999999988876654
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00014 Score=57.72 Aligned_cols=99 Identities=25% Similarity=0.364 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
..-|..++...+|+.|+.+|.+++.+ +|..+..+.+.+.+|++..+++....-..+++++.. .
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~---------N 76 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP---------N 76 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh---------H
Confidence 44566777888999999999999998 888899999999999999999999999999999854 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
.+...+.+|........+++|+..++++..+....+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 588999999999999999999999999998887653
No 245
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0084 Score=46.57 Aligned_cols=138 Identities=22% Similarity=0.161 Sum_probs=97.2
Q ss_pred hhHHHHHHHcCChh---hHHHHHHHHHHHHHHH-----------hcCC--chhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 168 MQLGDTCSMLGQVD---RSIGCYEEGLKIQIEA-----------LGET--DPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 168 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~-----------~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
...|+-|+...+.+ +|-..|+++++....- ...+ ...-..+...++..+...|++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455555544444 6666777776654221 0111 111223456788899999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSY 311 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 311 (476)
++....+. .....+-.+|+.+...+|.+++|+..+... .++...+......|.++...|+-++|+..|
T Consensus 115 ~l~~t~De-----~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~elrGDill~kg~k~~Ar~ay 182 (207)
T COG2976 115 ALAQTKDE-----NLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAELRGDILLAKGDKQEARAAY 182 (207)
T ss_pred HHccchhH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHHhhhHHHHcCchHHHHHHH
Confidence 88644331 244556788999999999999999888642 234455666778899999999999999999
Q ss_pred HHHHHH
Q 011858 312 QKALTV 317 (476)
Q Consensus 312 ~~al~~ 317 (476)
+++++.
T Consensus 183 ~kAl~~ 188 (207)
T COG2976 183 EKALES 188 (207)
T ss_pred HHHHHc
Confidence 999987
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.0074 Score=53.05 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-
Q 011858 222 FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS- 300 (476)
Q Consensus 222 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~- 300 (476)
+..+...+.+.+.......+........+..++-..|....+|+.-+++.+..-.+-. .+......+....|.++.+
T Consensus 115 ~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~--~~~~~~~~i~~~yafALnRr 192 (374)
T PF13281_consen 115 YSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPT--CDVANQHNIKFQYAFALNRR 192 (374)
T ss_pred HhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc--cchhcchHHHHHHHHHHhhc
Confidence 3334444444444444433322233444566777789999999998888875432200 0122334456677888888
Q ss_pred --cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHHHcCCCCCCCh
Q 011858 301 --LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT---------GKLRESKSYCENALRIYARPVPGTTA 369 (476)
Q Consensus 301 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~ 369 (476)
.|+.++|+..+..++.. .......++..+|.+|... ...++|+.+|.++.++.+..
T Consensus 193 n~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~------ 259 (374)
T PF13281_consen 193 NKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY------ 259 (374)
T ss_pred ccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc------
Confidence 89999999999987654 2344567888888887542 23678888888888875332
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHhc-cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 370 EEIAGGLTEISAIYESVDEPEEALKLLQRAM----KLLEDK-PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
..-.+++.++...|...+...-+++.. .+..+. .-....-.+.+..++.+..-.|++++|.+++++++.+
T Consensus 260 ----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 260 ----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 223455555666665444433333332 111111 0122223345557788888999999999999999865
No 247
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.80 E-value=0.0009 Score=46.50 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=69.1
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 216 HVQAMQFDKAEELCKKTLEIHRAHSEPA-SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++++.+.+..++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4568999999999999999987776643 123456688899999999999999999999999999999988888777776
Q ss_pred HHHH
Q 011858 295 GNIY 298 (476)
Q Consensus 295 ~~~~ 298 (476)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6554
No 248
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.78 E-value=0.00048 Score=55.94 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=78.7
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC------CCchHHHH
Q 011858 343 TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG------QQSTIAGI 416 (476)
Q Consensus 343 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~ 416 (476)
...+++|++.|.-|+-...-. +..+...+..+..+|++|..+|+.+....++++|++.+..... .......+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~--~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK--KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 446788888888888776543 4456678899999999999999988888888887777655432 23345678
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 417 EARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
++.+|.+..+.|++++|..+|.+.+..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999999864
No 249
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.77 E-value=5.7e-05 Score=43.41 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=27.8
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
.++.++|.+|..+|++++|+.++++++.+.++.+|.++|+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 5689999999999999999999999999999998888763
No 250
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.77 E-value=0.00072 Score=46.98 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=64.1
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011858 258 CEAKGDYEAALEHLVLASMAMIANGQDN---EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFV 334 (476)
Q Consensus 258 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 334 (476)
....|++.+|++.+.+..+......... ....+..++|.++...|++++|+..+++++++.++. +|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999988877766655 567788899999999999999999999999999987 44444455555
Q ss_pred HHHHH
Q 011858 335 RLADL 339 (476)
Q Consensus 335 ~la~~ 339 (476)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 54443
No 251
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00034 Score=58.51 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
..+..+..-|+-|++..+|..|...|.+++. ...++....+.+|.|.+-+....|+|..|+.-..+++.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-------- 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-------- 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 3566677779999999999999999999865 667788888999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.|....+++.=+.++..+.++.+|..++++.+.+..
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 889999999999999999999999999999887753
No 252
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.034 Score=50.42 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=140.2
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE 246 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 246 (476)
...-+..+...|+.+.|+..++.+++..- .....-.++.+|.++..+.+|..|...+....+...- .
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-------S 336 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW-------S 336 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-------h
Confidence 56677888888888889999998887211 2234557888999999999999999998887765422 2
Q ss_pred HHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 247 ESADRRLMALICE--------AKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 247 ~~~~~~~la~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
.+..-+..|-|+. ..|+-++|-.+++.........+.....-. -..+++-+..
T Consensus 337 ~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~-------------------f~~RKverf~ 397 (546)
T KOG3783|consen 337 HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK-------------------FIVRKVERFV 397 (546)
T ss_pred HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH-------------------HHHHHHHHHh
Confidence 2221222223332 133555555555555444433221111100 1111211111
Q ss_pred HhcCCCCCchH--HHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 319 KSSKGDNHPSV--ASVFVRLADLYHRT--GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALK 394 (476)
Q Consensus 319 ~~~~~~~~~~~--~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (476)
... +-.+.. +.-+..++.++..- ...++.. ++........ -++..+...-+..+|.++..+|+...|..
T Consensus 398 ~~~--~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~-~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~ 470 (546)
T KOG3783|consen 398 KRG--PLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPK-IDDSDDEGLKYLLKGVILRNLGDSEVAPK 470 (546)
T ss_pred ccc--cccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccC-CCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 111 000000 11123333333222 1222222 2222222111 11444556667788999999999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHH
Q 011858 395 LLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGR-YEEARSSFESAIAKL 444 (476)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~ 444 (476)
+|...++.......+.+....+++.+|.+|..+|. ..++..++.+|-+..
T Consensus 471 ~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 471 CFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 99998876555545677778999999999999999 999999999997654
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.72 E-value=0.0021 Score=49.34 Aligned_cols=115 Identities=27% Similarity=0.242 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC-Ch------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPGT-TA------------EEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
+...|......++.+.++..+++++.++....... .. .....++..++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445556677888888888888888876432111 10 123456667888889999999999999999
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH-hcccCchh
Q 011858 400 MKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA-SGERKSAF 454 (476)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~ 454 (476)
+...|-+. .++..+..+|...|+..+|+..|++....+.+ .|...++.
T Consensus 89 l~~dP~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 89 LALDPYDE-------EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHSTT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HhcCCCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99988774 78889999999999999999999999988875 45544443
No 254
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.70 E-value=0.03 Score=53.45 Aligned_cols=267 Identities=16% Similarity=0.091 Sum_probs=161.5
Q ss_pred hHHHHHHHHHHHHHhc-----CChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcC-----ChhhHHHHHH
Q 011858 119 DYAMSLHVLAAIYCSL-----GKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG-----QVDRSIGCYE 188 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 188 (476)
....+...+|.+|..- .+.+.|+.+|+.+............+ .+.+.+|.+|.... ++..|+.+|.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~----~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~ 317 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP----PAQYGLGRLYLQGLGVEKIDYEKALKLYT 317 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC----ccccHHHHHHhcCCCCccccHHHHHHHHH
Confidence 3455677788887654 68999999999998721110001111 24788999998854 5677888888
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----h
Q 011858 189 EGLKIQIEALGETDPRVGETCRYLAEAHVQAM---QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA----K 261 (476)
Q Consensus 189 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 261 (476)
++-+. ....+.+.+|.++..-. ++..|.++|..|... ....+.+.++.+|.. .
T Consensus 318 ~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 318 KAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVE 377 (552)
T ss_pred HHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcC
Confidence 88765 34466788888887655 567888888888643 223446777777764 3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 011858 262 GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSL-CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY 340 (476)
Q Consensus 262 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 340 (476)
-+...|..+++++.+. + . ..+...++.++... ++++.+...+....+.--+. .......+.......
T Consensus 378 r~~~~A~~~~k~aA~~----g-~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~----~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEK----G-N---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV----AQSNAAYLLDQSEED 445 (552)
T ss_pred CCHHHHHHHHHHHHHc----c-C---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH----HhhHHHHHHHhcccc
Confidence 4788999999987542 1 1 22223333333222 77777666665554442111 111111111111111
Q ss_pred HHc----CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhccCCCch
Q 011858 341 HRT----GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV----DEPEEALKLLQRAMKLLEDKPGQQST 412 (476)
Q Consensus 341 ~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~ 412 (476)
... .+.+.+...+.++... ....+...+|.+|..- .+++.|...|.++....
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--------- 505 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--------- 505 (552)
T ss_pred ccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---------
Confidence 111 1334455555444432 1255677788877654 46899999999887654
Q ss_pred HHHHHHHHHHHHHHh---hcHHHHHHHHHHHHH
Q 011858 413 IAGIEARMGVMFYMV---GRYEEARSSFESAIA 442 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~ 442 (476)
+...+++|.++..- .....|.++|.++.+
T Consensus 506 -~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 506 -AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred -hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 26777889888742 126788888887764
No 255
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0015 Score=56.21 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS-LCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
+|..+.....+.+..+.|...|.+|+. .......+|...|.+.+. .++.+.|...|+.+++.+ +.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------PS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------TT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CC
Confidence 355666777777789999999998842 333445667788888666 566666999999999884 44
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 329 VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
....+......+...|+.+.|..+|++++..... ......+|......-...|+.+....+.+++.+..+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5666777778889999999999999999876322 1114567888888888999999999999999888765
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.67 E-value=0.00014 Score=39.89 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 416 IEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
++..||.+|..+|++++|+++|++++.+..+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 4678999999999999999999999977665543
No 257
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00055 Score=57.33 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
...+.+.-+-.-|+-|+...+|..|+..|.+++..-- .++...+.+|.+.+.+....|+|..|+.-..+++.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-----~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC-----ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-----CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3445777788899999999999999999999998642 223333467999999999999999999999999987
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
+|....+++.-+.+++.+.++++|..+++..+.+...
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7888899999999999999999999999998876644
No 258
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.016 Score=56.43 Aligned_cols=216 Identities=16% Similarity=0.159 Sum_probs=110.4
Q ss_pred hHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 166 GYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+|..+|......|...+|++.|-++- +| ..|.....+..+.|.|++-++++.-+.+..+...-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i---- 1168 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI---- 1168 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc----
Confidence 46677777777777777776665531 22 23455555666667777777766666554433211
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
-..+-..|.+.++..+-.+++. . +..+ -....|.-++..|.|+.|.-+|...
T Consensus 1169 -----d~eLi~AyAkt~rl~elE~fi~--------g---pN~A-~i~~vGdrcf~~~~y~aAkl~y~~v----------- 1220 (1666)
T KOG0985|consen 1169 -----DSELIFAYAKTNRLTELEEFIA--------G---PNVA-NIQQVGDRCFEEKMYEAAKLLYSNV----------- 1220 (1666)
T ss_pred -----hHHHHHHHHHhchHHHHHHHhc--------C---CCch-hHHHHhHHHhhhhhhHHHHHHHHHh-----------
Confidence 1223334444454444333321 1 1111 1123455555555555554443321
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cCC----C----------CCCChHHHHHHHHHHHHHHHHcCCH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIY--ARP----V----------PGTTAEEIAGGLTEISAIYESVDEP 389 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~----~----------~~~~~~~~~~~~~~la~~~~~~g~~ 389 (476)
.-+..|+..+..+|+|+.|....++|-.+- +.. . =|-+-.-.++-+-.+...|...|-+
T Consensus 1221 -----SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1221 -----SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcH
Confidence 223445555555666666655555443210 000 0 0111111234455667778888888
Q ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 390 EEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 390 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
++-+..++.++.+-+... ..+..||.+|.+- ++++-.++++-
T Consensus 1296 eElIsl~Ea~LGLERAHM-------gmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1296 EELISLLEAGLGLERAHM-------GMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHhhhchhHHHH-------HHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 888888888776655542 4566777766543 45555554443
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.64 E-value=0.0079 Score=46.12 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchh-------------HHHHHhHhhHHHHHHHcCChhhHHHHHHH
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHA-------------LAKFSGYMQLGDTCSMLGQVDRSIGCYEE 189 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 189 (476)
.+...|......|+...++..+++++.+.....-.+.. ...+.+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445666677888899999999999887532211110 11135677788889999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 190 GLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 190 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
++.. +|..-.++..+..+|...|+..+|+..|++......+.
T Consensus 88 ~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 88 ALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 9998 78888899999999999999999999999998887754
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00024 Score=41.14 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLAD 338 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 338 (476)
.++..+|.+|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999998 7888888888875
No 261
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.60 E-value=0.0011 Score=56.98 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
+|..+.....+.+..+.|...|.+|++. ......+|...|.+-.. .++.+.|...|+.+++.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~----- 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD----- 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----
Confidence 5666667777777799999999999732 34456778888998666 566666999999999998652
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
...+......+...|+.+.|..+|++++...... .....+|......-...|+.+......+++.+.+.+
T Consensus 70 ----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 ----PDFWLEYLDFLIKLNDINNARALFERAISSLPKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 4556666678889999999999999998763322 112357777888888999999999999999887655
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.59 E-value=0.053 Score=48.94 Aligned_cols=240 Identities=16% Similarity=0.100 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 155 (476)
...+..+......| +++++..+.+++...+-...... ........+-.+.. +....+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~-~~~~~~~~i~~~r~~~~~~l~~~--~~~s~~~~y~~l~~-lq~L~Elee~~~~~~~~~~~----- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQG-DYDEAKKYIEKARQLLLDELSAL--SSESYQRAYPSLVK-LQQLVELEEIIELKSNLSQN----- 100 (352)
T ss_pred hHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhccc-----
Confidence 44555666666777 49999999998888765443300 01111112222211 11223334444433221110
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG--ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
..........|.. ............+..+.....++. .........+...+.+..+.|+++.|...+.++.
T Consensus 101 -~~~~~~l~~~W~~------Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~ 173 (352)
T PF02259_consen 101 -PQDLKSLLKRWRS------RLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLF 173 (352)
T ss_pred -HHHHHHHHHHHHH------HHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHh
Confidence 0000000011111 111112333344444444333322 1134677889999999999999999999999987
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHc---------------------------CCCh
Q 011858 234 EIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM-AMIAN---------------------------GQDN 285 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~---------------------------~~~~ 285 (476)
......... ...+....+.+.+..|+..+|+..++..+. ..... ....
T Consensus 174 ~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T PF02259_consen 174 QLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKE 249 (352)
T ss_pred ccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHH
Confidence 655332221 223356678999999999999999988776 22211 1124
Q ss_pred hHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc
Q 011858 286 EVAAIDVSIGNIYLSL------CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT 343 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 343 (476)
..+.++..+|...... +..+++...|.++.++ .+....++..+|..+...
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 5567788888888887 8889999999999988 666677888888776543
No 263
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.57 E-value=0.0023 Score=48.99 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHHHcCCCCCCChHHHH
Q 011858 304 FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKL----------RESKSYCENALRIYARPVPGTTAEEIA 373 (476)
Q Consensus 304 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~ 373 (476)
|+.|.+.++..... +|.....+++.|.++..+.++ ++|+.-|++++.+.+ ...
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P---------~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP---------NKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T---------T-H
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC---------chH
Confidence 45666666666665 778888888888888776543 445556666666643 346
Q ss_pred HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhc
Q 011858 374 GGLTEISAIYESVDE-----------PEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 374 ~~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~~~~~ 406 (476)
.+++.+|.+|..++. |++|..+|++|....|.+
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788888888877553 445555555555554444
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.56 E-value=0.00029 Score=38.59 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHS 240 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 240 (476)
++.+||.+|...|++++|+.+|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478999999999999999999999998776543
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.55 E-value=0.00015 Score=39.22 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 373 AGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
+.++..+|.++..+|++++|+.+|++++++.++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999998764
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.029 Score=52.41 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=54.3
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHH-----HHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH------H
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKI-----QIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKT------L 233 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l 233 (476)
+.|..++......-.++-|...|-++-.. .+++ .....--...+.+-..-|+|++|.+.|..+ +
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAi 767 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAI 767 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhH
Confidence 34777888777777777777777665322 1111 000001123344445567777777777543 2
Q ss_pred HHHHhcC--------------CCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 234 EIHRAHS--------------EPASLEESADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 234 ~~~~~~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
++..+.+ +.+....-.++.++|..+..+..+++|.++|.+
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211111 122233445566666666666666666666654
No 267
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.54 E-value=0.025 Score=52.28 Aligned_cols=189 Identities=12% Similarity=0.037 Sum_probs=99.8
Q ss_pred HHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH---------HHHHhc
Q 011858 129 AIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI---------QIEALG 199 (476)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~~~~~ 199 (476)
..|...|.+++|...---.+.. .-|..++.-....=+++-|.+.|.++..+ .+....
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv~--------------~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVTD--------------TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred hhhhhccchhhhhcccccceec--------------chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3566777777775432111111 11555666555666677777666654322 111101
Q ss_pred CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH------HHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKT------LEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
...|. -..+|.++...|+|.+|.+.|.+. ++++... -++..+.-+...|..++-..+.++
T Consensus 630 ge~P~----~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl----------RMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 630 GETPN----DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL----------RMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred CCCch----HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHH
Confidence 11122 235677888889999998888653 3333221 134455556666666655555554
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChh
Q 011858 274 ASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFS------YQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLR 347 (476)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 347 (476)
-.+.+.....+.. -+.++...|+.++|+.. .+-++++.++. +......+..++..+.....+.
T Consensus 696 RA~WAr~~kePka-------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 696 RADWARNIKEPKA-------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred HHHHhhhcCCcHH-------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccc
Confidence 4333333333222 35667777888887764 34455665554 3334445555555555555555
Q ss_pred HHHHHHHHH
Q 011858 348 ESKSYCENA 356 (476)
Q Consensus 348 ~A~~~~~~a 356 (476)
-|.+.|.+.
T Consensus 765 LAaeIF~k~ 773 (1081)
T KOG1538|consen 765 LAAEIFLKM 773 (1081)
T ss_pred hHHHHHHHh
Confidence 555555443
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.52 E-value=0.0001 Score=39.68 Aligned_cols=34 Identities=32% Similarity=0.617 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHH
Q 011858 310 SYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKS 351 (476)
Q Consensus 310 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 351 (476)
+|++++++ +|....+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37888888 89999999999999999999999863
No 269
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.52 E-value=0.0048 Score=56.05 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=77.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGL 376 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (476)
.+...|+...|+.++..|+... .......+.+|+.+....|-...|-.++.+++.+... ....+
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---------epl~~ 679 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---------EPLTF 679 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------CchHH
Confidence 3446799999999999998762 2233456788999999999999999999999998632 24567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
+.+|..+..+.+.+.|++.|++|++..++.+
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 8899999999999999999999999877765
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.52 E-value=0.00023 Score=38.51 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
+.+++.+|.++..+|++++|+..|++++++.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35799999999999999999999999999875
No 271
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0011 Score=53.09 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC---CchhH------HHHHhHhhHHHHHHHcCChhhHHHHHHHH
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG---ADHAL------AKFSGYMQLGDTCSMLGQVDRSIGCYEEG 190 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 190 (476)
...++..-|+-++..|+|.+|...|+.|+.......- +..+. .....+.+.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999876542211 11111 11245789999999999999999999998
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 191 LKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
+.. ++....+|+..|.++...-+.++|..-|.+++++.+.
T Consensus 257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 876 7788999999999999999999999999999987755
No 272
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.12 Score=50.92 Aligned_cols=218 Identities=22% Similarity=0.199 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
+...+|..+|.+....|...+|++.|-++-+ + ..|.....+....|.|++-+.++..+.+..++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikadD----------p----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-- 1165 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADD----------P----SNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-- 1165 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcCC----------c----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC--
Confidence 3456799999999999999999999877622 1 23778888889999999999998887765433
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
+ .+-..+..+|.+.++..+-.+++. ++ ..+. ....|.-++..|.|+.|.-+|..
T Consensus 1166 ----~---~id~eLi~AyAkt~rl~elE~fi~----------gp---N~A~-i~~vGdrcf~~~~y~aAkl~y~~----- 1219 (1666)
T KOG0985|consen 1166 ----P---YIDSELIFAYAKTNRLTELEEFIA----------GP---NVAN-IQQVGDRCFEEKMYEAAKLLYSN----- 1219 (1666)
T ss_pred ----c---cchHHHHHHHHHhchHHHHHHHhc----------CC---Cchh-HHHHhHHHhhhhhhHHHHHHHHH-----
Confidence 1 112233344555555544333221 11 0111 23446666666666666555542
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HH---------------hcCCCCCchHHHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV--FK---------------SSKGDNHPSVASVFVRLADLYH 341 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~---------------~~~~~~~~~~~~~~~~la~~~~ 341 (476)
..-+..++..+..+|+|+.|....++|-.. ++ +..|-+-...+.-+-.+...|.
T Consensus 1220 ---------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1220 ---------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence 122344555666666666666665554321 11 1112222223455667788888
Q ss_pred HcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 342 RTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 342 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
..|-|++-+.+++.++.+-+. ....+..+|.+|.+- ++++-.++++
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 999999999999888876433 245666777776543 4455554443
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.50 E-value=0.057 Score=51.59 Aligned_cols=266 Identities=18% Similarity=0.111 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcC-----ChhHHHHHHHH
Q 011858 76 PFLLKLARDTIAS----GEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLG-----KFEEAVPALEK 146 (476)
Q Consensus 76 ~~~~~~a~~~~~~----g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 146 (476)
.....+|.++..- .+|++.|+.+++.+...+.+... .....+.+.+|.+|.... ++..|..+|.+
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~------~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~ 318 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT------KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTK 318 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh------hcCCccccHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 3445556555443 14689999999999884333321 113346888999998754 67889999999
Q ss_pred hhhhccccCCCchhHHHHHhHhhHHHHHHHcC---ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----h
Q 011858 147 AISVPDVTRGADHALAKFSGYMQLGDTCSMLG---QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ----A 219 (476)
Q Consensus 147 al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 219 (476)
+.+... + .+.+.+|.++.... ++..|..+|..|... ....+.+.++.+|.. .
T Consensus 319 aA~~g~-------~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 319 AAELGN-------P----DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----------GHILAIYRLALCYELGLGVE 377 (552)
T ss_pred HHhcCC-------c----hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhCCCcC
Confidence 877642 1 34788898888765 567899999888764 345677888888764 3
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 220 MQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAK-GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 220 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
-+...|..++.++.+... ..+...++..+..- +.++.+.-.+.......... ....+..+.......
T Consensus 378 r~~~~A~~~~k~aA~~g~----------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~--~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN----------PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV--AQSNAAYLLDQSEED 445 (552)
T ss_pred CCHHHHHHHHHHHHHccC----------hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH--HhhHHHHHHHhcccc
Confidence 578899999999876541 11123333333322 66666666555433221111 111111111111111
Q ss_pred HHc----CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 299 LSL----CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT----GKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 299 ~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
... .+...+...+.++.. .....+...||.+|..- .+++.|...|..+....
T Consensus 446 ~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---------- 505 (552)
T KOG1550|consen 446 LFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---------- 505 (552)
T ss_pred ccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----------
Confidence 111 234455555555433 34466778888888654 35888999998887641
Q ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Q 011858 371 EIAGGLTEISAIYESV---DEPEEALKLLQRAMKL 402 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~ 402 (476)
....+++|.++..- ..+..|.+++.++.+.
T Consensus 506 --~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 506 --AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred --hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 67788899888751 1267888888877654
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.088 Score=49.40 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHH------HHHHH
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEE------GLKIQ 194 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~ 194 (476)
.+.|..++......-.++-|...|-+.-....-.. .........--...+.+-..-|+|++|...|-. |+++.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr 770 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELR 770 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHH
Confidence 34677788877777777788777766543321000 000000000013345555556777777776643 23322
Q ss_pred HHH--------------hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 195 IEA--------------LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 195 ~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
.++ .+.++.....++.++|..+..+..|++|.++|.+.-
T Consensus 771 ~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 771 KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 221 022345566789999999999999999999998764
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.48 E-value=0.00027 Score=40.89 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGV 422 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (476)
.++..+|.+|..+|++++|++.|+++++..+++. .++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-------~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP-------EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-------HHHHHhhh
Confidence 4678899999999999999999999999998875 66666654
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.46 E-value=0.00029 Score=38.11 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.++..+|.++..+|++++|+++|++++++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999998765
No 277
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.45 E-value=0.039 Score=53.15 Aligned_cols=187 Identities=14% Similarity=0.065 Sum_probs=111.1
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 011858 175 SMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLM 254 (476)
Q Consensus 175 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 254 (476)
...+++.+|+....+.++. +|....+...-|.++.++|+.++|..+++. +...... .-.++..+
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~~-------D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLKGT-------DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCCCC-------chHHHHHH
Confidence 3567888888888877765 667777777888899999999999955543 3332222 12346778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011858 255 ALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFV 334 (476)
Q Consensus 255 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 334 (476)
-.+|..+|++++|..+|++++. ..|. -..+..+-.+|.+.+.|.+-.+ -++++++.. +..+ ...|.
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~------~~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~~--pk~~--yyfWs 149 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQ------KYPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKNF--PKRA--YYFWS 149 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh------hCCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--Cccc--chHHH
Confidence 8999999999999999998855 2233 3444555567777777754332 234444432 2222 23334
Q ss_pred HHHHHHHHcCChhHHHH---------HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 335 RLADLYHRTGKLRESKS---------YCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQR 398 (476)
Q Consensus 335 ~la~~~~~~g~~~~A~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (476)
.+..+.......++... .+++.++.- | .-...+++.. .-.++..+|++++|.+.+..
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~-----g-k~~s~aE~~L-yl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKK-----G-KIESEAEIIL-YLLILELQGKYQEALEFLAI 215 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccC-----C-ccchHHHHHH-HHHHHHhcccHHHHHHHHHH
Confidence 44444444444443332 233322211 1 1111222222 23456678999999998843
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.44 E-value=0.00034 Score=37.83 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
+.+++.+|.+++..|++++|+.+|++++.+.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999875
No 279
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.023 Score=49.78 Aligned_cols=189 Identities=12% Similarity=-0.030 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
....+..+.++....++..|...+.+..-.+...........++..++.++.+.+.--.+..+.-.++....+. ..+.
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldy 350 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDY 350 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccch
Confidence 44456678889999999999999988766665666666777888888888888888888888887777776665 3344
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIY------ESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~a~~ 401 (476)
..+..-..++..+...|..++|...+..++....-.+ + -.+.+.++...++++ ....+.+.+.++++++-.
T Consensus 351 l~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~G-g--L~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~ 427 (482)
T KOG4322|consen 351 LEANENLDLALEHLALGSPKAALPLLHTAVHLILVQG-G--LDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQS 427 (482)
T ss_pred hhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhcc-c--hhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHH
Confidence 4566677888888999999999999999987654422 1 111122222111111 145678889999999999
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHhhcHHH---HHHHHHHHHH
Q 011858 402 LLEDKPGQQSTIAGIEARMGVMFYMVGRYEE---ARSSFESAIA 442 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~ 442 (476)
...+. +.+..+.++.+.++..|-..|+.++ +...|++++.
T Consensus 428 ~f~kL-~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 428 IFYKL-GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHc-cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 98887 7777788899999999999998654 4445555553
No 280
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0037 Score=50.21 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----CCh-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANG-----QDN-------EVAAIDVSIGNIYLSLCRFDEAVFSYQKALT 316 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 316 (476)
.++..-|+-++..|+|.+|...|..|+...+... ..+ .....+.|+++++...|+|-+++++....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3466678889999999999999999987665321 111 2345678999999999999999999999998
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 317 VFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
. ++....+|+..|.++...=+.++|..-|.+++++.+
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 7 888999999999999999999999999999998743
No 281
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.11 Score=47.35 Aligned_cols=247 Identities=13% Similarity=0.024 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
|..+..+..-+..+...|+.+.|+..++..+... . .....-+++.+|.++..+.+|.+|-..+....+..
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~--~-----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des--- 333 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIPIR--M-----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES--- 333 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh---
Confidence 4455567778888888888888999998887721 1 11112457889999999999999999988877652
Q ss_pred hcCCchhHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHH
Q 011858 198 LGETDPRVGETCRYLAEAHVQ--------AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALE 269 (476)
Q Consensus 198 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 269 (476)
+...+..-+..|-++.. .|+-+.|..+++....+....+... +.... .. .++.+
T Consensus 334 ----dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~-P~E~f-~~------------RKver 395 (546)
T KOG3783|consen 334 ----DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNL-PLEKF-IV------------RKVER 395 (546)
T ss_pred ----hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccC-chhHH-HH------------HHHHH
Confidence 11222212223233322 3455666666655555544422111 10000 01 11111
Q ss_pred HHHHHHHHHHHcCCChh--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC
Q 011858 270 HLVLASMAMIANGQDNE--VAAIDVSIGNIYLSL--CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK 345 (476)
Q Consensus 270 ~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 345 (476)
+-. ..+.... .+.-+..++.++..- ...++.. +.....+...-++..+...-+..+|.++..+|+
T Consensus 396 f~~-------~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~ 464 (546)
T KOG3783|consen 396 FVK-------RGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD 464 (546)
T ss_pred Hhc-------cccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC
Confidence 111 1100000 000122233222221 1222222 222222221112344556667788999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q 011858 346 LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE-PEEALKLLQRAMKLLED 405 (476)
Q Consensus 346 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~ 405 (476)
...|..+|...++..... ..+......+++.+|.++..+|. ..++..++.+|-+...+
T Consensus 465 ~~~a~~~f~i~~~~e~~~--~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 465 SEVAPKCFKIQVEKESKR--TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHHHHHhh--ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 999999999988653332 45667778899999999999999 99999999999776543
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.28 E-value=0.00025 Score=38.12 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHH
Q 011858 186 CYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEE 227 (476)
Q Consensus 186 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 227 (476)
+|++++++ +|....+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788887 78899999999999999999999863
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00097 Score=35.97 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999876
No 284
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.12 Score=45.48 Aligned_cols=199 Identities=15% Similarity=0.035 Sum_probs=144.9
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
|.+-....+..+..+.++....++..|...+.+.+-.+...... .....++..++.++.+-+..-.+..+.-.++...
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~--em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNE--EMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 33444566777889999999999999999999987655443332 3566778888888888888888888888887777
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS-----VASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
.....+...+..-..++..+...|..+.|+..+..++....-..|-++.. .+.++..-+..+ ...+.+.+..++
T Consensus 344 sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 344 SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 77777777788888899999999999999999999988765443222111 111111112222 556788889999
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHH
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEE---ALKLLQRAMKLL 403 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~ 403 (476)
+++-.++.+.. -+..+.++.+.++..|-..|+.++ +-..|+++....
T Consensus 423 ~~A~~~f~kL~---~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~l 472 (482)
T KOG4322|consen 423 DLAQSIFYKLG---CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYL 472 (482)
T ss_pred HHHHHHHHHcc---chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Confidence 99999888853 566678899999999999998654 455566655443
No 285
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.23 E-value=0.0011 Score=61.86 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.2
Q ss_pred HHHHhh
Q 011858 143 ALEKAI 148 (476)
Q Consensus 143 ~~~~al 148 (476)
++++.+
T Consensus 734 ~iqnLi 739 (1102)
T KOG1924|consen 734 MIQNLI 739 (1102)
T ss_pred HHHHHH
Confidence 333333
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.18 E-value=0.0011 Score=35.83 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 415 GIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
.++..+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999998754
No 287
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.18 Score=47.07 Aligned_cols=182 Identities=15% Similarity=0.077 Sum_probs=95.4
Q ss_pred hhHHHHHHHcCChhhHHHHHHHH------HHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEG------LKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
..++.++...|+|.+|...|.+. ++++.. .-.+..++-+...|.-++-..+.++--+-......
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 56788888899999999888753 333211 12345566666666666666665555555544444
Q ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHH------HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 242 PASLEESADRRLMALICEAKGDYEAALEHL------VLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKAL 315 (476)
Q Consensus 242 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 315 (476)
+ ..-+..+...|+.++|+... +-++++.++... .....+..++..+.....+.-|.+.|++.-
T Consensus 706 P---------kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~--~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 706 P---------KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK--AEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred c---------HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch--hhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 4 12366677788888887654 233333333221 112233344444444555555554444432
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 316 TVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKL 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (476)
+. ..+..++...+++++|....++--+.. ..+++..|+-+.+..++++|.+.
T Consensus 775 D~----------------ksiVqlHve~~~W~eAFalAe~hPe~~------------~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 775 DL----------------KSLVQLHVETQRWDEAFALAEKHPEFK------------DDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred cH----------------HHHhhheeecccchHhHhhhhhCcccc------------ccccchHHHHhhhhhhHHHHHHH
Confidence 21 123345556677777765544433222 23344444444444444444444
Q ss_pred HHH
Q 011858 396 LQR 398 (476)
Q Consensus 396 ~~~ 398 (476)
|.+
T Consensus 827 fhk 829 (1081)
T KOG1538|consen 827 FHK 829 (1081)
T ss_pred HHH
Confidence 433
No 288
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.10 E-value=0.0085 Score=46.01 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC----hhHH
Q 011858 284 DNEVAAIDVSIGNIYLSLCR----------FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK----LRES 349 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A 349 (476)
+|..+..+++.|.++..+.+ +++|+.-|++|+.+ +|....++.++|.+|..++. ..+|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A 92 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEA 92 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHH
Confidence 44556667777777766543 34555666666666 78889999999999987653 3455
Q ss_pred HHHHHHHHHHH
Q 011858 350 KSYCENALRIY 360 (476)
Q Consensus 350 ~~~~~~a~~~~ 360 (476)
..+|++|...+
T Consensus 93 ~~~F~kA~~~F 103 (186)
T PF06552_consen 93 EEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 289
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.97 E-value=0.22 Score=43.58 Aligned_cols=182 Identities=18% Similarity=0.208 Sum_probs=123.1
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 011858 215 AHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA----KGDYEAALEHLVLASMAMIANGQDNEVAAI 290 (476)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 290 (476)
.....+++..+...+.++-.. . .......++.+|.. ..+..+|.++|..+.. ......
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~----~------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a 111 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL----G------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEA 111 (292)
T ss_pred cccccccHHHHHHHHHHhhhc----C------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHH
Confidence 334566777888877777551 1 11335666777664 3467888888885422 233456
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHH
Q 011858 291 DVSIGNIYLS----LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG-------KLRESKSYCENALRI 359 (476)
Q Consensus 291 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~ 359 (476)
.+.+|.+|.. ..+..+|..+|+++.+. ++.+. ..+...++.+|..-. +...|..+|.++...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~------g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL------GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc------CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 6778988887 45899999999999886 22211 445777888776542 233688888887765
Q ss_pred HcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhh-------
Q 011858 360 YARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVG------- 428 (476)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 428 (476)
. ...+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 185 ~-----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---------~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 185 G-----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---------GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred c-----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---------HHHHHHHH-HHHhcCCCchhhh
Confidence 3 35678888888765 3488999999999976532 25666777 666655
Q ss_pred --------cHHHHHHHHHHHHH
Q 011858 429 --------RYEEARSSFESAIA 442 (476)
Q Consensus 429 --------~~~~A~~~~~~a~~ 442 (476)
+...|..++..+..
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHH
Confidence 77777877777664
No 290
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.32 Score=45.35 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
-.++.+-|.-.++..+|..++++|...+..... +......+.....++.+|..+.+.++|.+++++|-+..++++
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~---D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-- 428 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS---DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-- 428 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH--
Confidence 345666677788899999999999999988765 334445578889999999999999999999999988877764
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
.....+-.+....|+-++|+.+.........+
T Consensus 429 -----l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 429 -----LCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -----HHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 45556667777889999999998887776554
No 291
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.8 Score=49.85 Aligned_cols=91 Identities=11% Similarity=0.037 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 011858 346 LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY 425 (476)
Q Consensus 346 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (476)
..+-+-.+++++-..... ..-....+.+|...|++....|+++.|..++-+|.+.. . ..++...|..++
T Consensus 1645 ~~epILa~RRs~l~~~~~--~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~-------~~i~~E~AK~lW 1713 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR--SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--L-------PEIVLERAKLLW 1713 (2382)
T ss_pred HHhHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--c-------chHHHHHHHHHH
Confidence 344444455554433221 12355678999999999999999999999988887654 1 267889999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHHh
Q 011858 426 MVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 426 ~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
..|+-..|+..+++.++.....
T Consensus 1714 ~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1714 QTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhccHHHHHHHHHHHHHhhccc
Confidence 9999999999999999654433
No 292
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.24 Score=43.38 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=106.9
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 216 HVQAMQFDKAEELCKKTLEIHRAHS-EPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
++...++.+|...-+..+.-....+ ..-....+.+|+.+..+|...|+...-...+..-+.......+....+...+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 3445788888887777664432211 111234567788899999999998888777777777666666777888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
-..|...+.|+.|.....++.--- . ..+...+..++.+|.+..-+++|..|.+++-.|+...++
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe--~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPE--A--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCcc--c--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 999999999999988777654210 0 113366888899999999999999999999999998765
No 293
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.17 Score=42.47 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=83.2
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE 246 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 246 (476)
-+..+.-....|++.+|...|..++.. .+....+...++.+|...|+.+.|...+...=.-... ....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~----~~~~ 204 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD----KAAH 204 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh----hHHH
Confidence 456667778899999999999999987 4555788899999999999999998877653211111 0000
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
.......+..-....++......- ...++.....-+.++..+...|+.++|.+.+-..+..
T Consensus 205 ~l~a~i~ll~qaa~~~~~~~l~~~----------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 205 GLQAQIELLEQAAATPEIQDLQRR----------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHH----------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011111111111222222222221 2234555667788999999999999999888776665
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.84 E-value=0.31 Score=43.59 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=109.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------------------CCCchHHHHHHHHHHHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG---------------------DNHPSVASVFVRLADLYH 341 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~ 341 (476)
..|....++..++.++..+|+.+.|.+++++|+-.++.... ..+.....+++.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999877663221 012334566777788889
Q ss_pred HcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 011858 342 RTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMG 421 (476)
Q Consensus 342 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (476)
+.|-+..|.++.+-.+.+.... ++ ..++..+-....+.++++--++.++......... ....+....+.++
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~----DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~--~~~~lPn~a~S~a 185 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDE----DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN--WLSLLPNFAFSIA 185 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCC----Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh--hhhhCccHHHHHH
Confidence 9999999999999999886431 22 3455555566667788877777777655421111 0001114556777
Q ss_pred HHHHHhhcH---------------HHHHHHHHHHHHHHHHh
Q 011858 422 VMFYMVGRY---------------EEARSSFESAIAKLRAS 447 (476)
Q Consensus 422 ~~~~~~g~~---------------~~A~~~~~~a~~~~~~~ 447 (476)
.++...++. ++|...+.+|+..++..
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888888887 89999999999876544
No 295
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.84 E-value=0.24 Score=41.85 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=118.8
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCC---c-------hhHHHHHHHHHHHHHHhc--------------cH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGET---D-------PRVGETCRYLAEAHVQAM--------------QF 222 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~ 222 (476)
-+.+..+++..|+..+|+..+++=+..+.+..+.. . .-.+.-+..+|.+..... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 46677899999999999999999998887775541 1 011112233444433322 13
Q ss_pred HHHHHHHHHHHHHHHhcC---CCCc-----------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 223 DKAEELCKKTLEIHRAHS---EPAS-----------------LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 223 ~~A~~~~~~al~~~~~~~---~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
..|..+...-.+...... .... +.....+................++++.+|...+...+
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~ 172 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG 172 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence 334333333333333331 1000 00000000001001122344567889999999999888
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
.......+...+|..|+..|++++|+.+|+.+...+++. +-......++..+..|+...|+.+..+.+.-+.
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888899999999999999999999999998777654 223445677888899999999988877665443
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.75 E-value=0.32 Score=42.51 Aligned_cols=170 Identities=17% Similarity=0.132 Sum_probs=112.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHc----CChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 128 AAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSML----GQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 128 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
+......+++..+...+..+-.... . .....++.+|... .+..+|..+|+.+.+ .
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~~-------~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~ 106 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELGD-------A----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------D 106 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcCC-------h----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------c
Confidence 3344466778888888888766321 1 2366777776553 356778888885443 2
Q ss_pred hHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhC-------CHHHHHHHHH
Q 011858 204 RVGETCRYLAEAHVQ----AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKG-------DYEAALEHLV 272 (476)
Q Consensus 204 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~ 272 (476)
....+.+.+|.+|.. ..+..+|..+|+++.+...... ..+...++..|..-. +...|..+|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 445677889998887 4589999999999876532111 333566677666542 2336777777
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC
Q 011858 273 LASMAMIANGQDNEVAAIDVSIGNIYLS----LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG 344 (476)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 344 (476)
++.... ...+...+|.+|.. ..++.+|..+|.++-+. ++ ......++ ++...|
T Consensus 180 ~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~------g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ------GD----GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CC----HHHHHHHH-HHHhcC
Confidence 764422 45567788877755 35889999999999886 22 66777788 666555
No 297
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.61 Score=44.61 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHc
Q 011858 75 GPFLLKLARDTIAS 88 (476)
Q Consensus 75 ~~~~~~~a~~~~~~ 88 (476)
...+..++..+..+
T Consensus 656 ~dlfakL~~~Fatq 669 (1102)
T KOG1924|consen 656 DDLFAKLALKFATQ 669 (1102)
T ss_pred hHHHHHHHHHhhcc
Confidence 34455555555444
No 298
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=96.65 E-value=0.43 Score=43.92 Aligned_cols=177 Identities=16% Similarity=0.032 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHhcC
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRF-------DEAVFSYQKALTVFKSSK 322 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~ 322 (476)
....+|.+++..++|+-|...|+.+..-+.........+.+....|.+++..+.. ++...+++.|+..+....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 3677999999999999999999988776655555556666777777777776643 477788888888777621
Q ss_pred C---CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 323 G---DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY--ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 323 ~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
. ........+....+.++...|.+.+|...+-+..... ... .....+..+..+|.++
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l----~~~~~alllE~~a~~~-------------- 351 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL----RPFGSALLLEQAAYCY-------------- 351 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHhh--------------
Confidence 1 1123556677788888889999888877766666542 111 1111344444555555
Q ss_pred HHHHHHHhcc---C-C-CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 398 RAMKLLEDKP---G-Q-QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 398 ~a~~~~~~~~---~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
...+... + . ....+.-+..-|.-|.+.|+...|..+|.+++.++...
T Consensus 352 ---~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 352 ---ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ---cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 0011100 0 0 11122233344778889999999999999999887643
No 299
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.33 Score=40.53 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=99.2
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNI 297 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 297 (476)
.....++-++-+.+.++-.+..++. ...+.++.++|..|.+.++.+.+.+++.+.++-....+...+...+...+|.+
T Consensus 87 l~kkneeki~Elde~i~~~eedngE--~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~ 164 (412)
T COG5187 87 LLKKNEEKIEELDERIREKEEDNGE--TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLI 164 (412)
T ss_pred HHHhhHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHh
Confidence 3444556677777777666655543 46788899999999999999999999999988888888887877788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
|..+.-.++.++..+..++. |.+....-......|.......+|.+|-.++-..+..+...
T Consensus 165 y~d~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 165 YGDRKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred hccHHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 87766666665555555443 23333333344445666666778999988888888776553
No 300
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.34 Score=40.48 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=92.8
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 011858 261 KGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY 340 (476)
Q Consensus 261 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 340 (476)
...-++-++-+.+.++-.+..+.......++.++|..|.+.++.+.+.++..+.+.-.... +-..+...+...+|.+|
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y 165 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIY 165 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhh
Confidence 3444556666766666555555566778899999999999999999999999988765544 33445566677778777
Q ss_pred HHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 341 HRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 341 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..+.-.++.++.....+ ++ |.+....-..-...|.......++.+|-..+...+..+...
T Consensus 166 ~d~~vV~e~lE~~~~~i---Ek---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 166 GDRKVVEESLEVADDII---EK---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ccHHHHHHHHHHHHHHH---Hh---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 65554555544444444 33 44443334444455666677788899988888777665554
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.60 E-value=0.0035 Score=33.41 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.+++.+|.++...|++++|+..|++.++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999987664
No 302
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.26 Score=41.84 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC
Q 011858 223 DKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC 302 (476)
Q Consensus 223 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 302 (476)
++=++-+++.++-.+++.+. .....++.+.+..|++.|+-+.|++.+.+..+.....+...+.......+|..|....
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHH
Confidence 33445555555555555433 3667789999999999999999999999988877788888888888888888886654
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 303 RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 303 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
-..+.+ +++-.+.++- ++....-.....-|.......+|.+|-.+|-.++..+..
T Consensus 159 lV~~~i---ekak~liE~G--gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 159 LVTESI---EKAKSLIEEG--GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHH---HHHHHHHHhC--CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 444443 3444444332 333333344444566666778899999999888876654
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.55 E-value=0.0046 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
++++.+|.++...|++++|+..|++.++..++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36889999999999999999999999887653
No 304
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.54 E-value=0.62 Score=42.71 Aligned_cols=213 Identities=14% Similarity=0.089 Sum_probs=128.6
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHhcCCCC
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM---QFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
+...+.++...|+...|-..-.++.++.+.............++.++..-...- .++....++++.+.+......
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-- 366 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-- 366 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc--
Confidence 444556666667766555555555544443211112222333333333322222 255666667777665544332
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
.++..+-..-.+..-...|...|.++.+ .+.......+...+- -|...++..-|...|+-.+..+
T Consensus 367 -----Lv~~~~mn~irR~eGlkaaR~iF~kaR~----~~r~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf----- 431 (656)
T KOG1914|consen 367 -----LVYCQYMNFIRRAEGLKAARKIFKKARE----DKRTRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKF----- 431 (656)
T ss_pred -----eehhHHHHHHHHhhhHHHHHHHHHHHhh----ccCCcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhc-----
Confidence 2244455555566667778888887744 222222222222222 2556789999999999998873
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+....-......+...++-..+..+|++++... ........+|..+-..-..-|+....++.-++-...+
T Consensus 432 ---~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~------l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 432 ---GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV------LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred ---CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc------CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 3334444445566788999999999999999861 1234456788888888888999998888887777766
Q ss_pred Hh
Q 011858 404 ED 405 (476)
Q Consensus 404 ~~ 405 (476)
+.
T Consensus 503 ~~ 504 (656)
T KOG1914|consen 503 PA 504 (656)
T ss_pred ch
Confidence 63
No 305
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.54 E-value=0.4 Score=40.48 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Q 011858 303 RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAI 382 (476)
Q Consensus 303 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 382 (476)
.....++.+.+|++.++.. +.......+...+|..|...|++++|+.+|+.+...+++. .-......++..+..|
T Consensus 153 hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWWSLLTEVLWRLLEC 227 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHH
Confidence 3456788899999988876 3355667778899999999999999999999998888763 3445567788889999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 011858 383 YESVDEPEEALKLLQRA 399 (476)
Q Consensus 383 ~~~~g~~~~A~~~~~~a 399 (476)
+...|+.+..+.+.-+.
T Consensus 228 a~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 99999998877765443
No 306
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.53 E-value=0.034 Score=36.04 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=59.0
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 242 (476)
...-|.-++...+.++|+..++++++... +.+....++..+..+|...|+|.+.+.+..+=+++.....++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44556566788899999999999998753 356778899999999999999999999999988888776654
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=2 Score=47.12 Aligned_cols=141 Identities=11% Similarity=0.066 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Q 011858 264 YEAALEHLVLASMAMIAN-GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR 342 (476)
Q Consensus 264 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 342 (476)
..+-+-.+++++...... +.....+.+|...|++....|+++.|..++-+|.+. . ...++...|..+..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r--~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------R--LPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------c--cchHHHHHHHHHHh
Confidence 334444455554433333 446788999999999999999999999999888765 2 56788999999999
Q ss_pred cCChhHHHHHHHHHHHHHcCCCC--------CCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhccCCCch
Q 011858 343 TGKLRESKSYCENALRIYARPVP--------GTTAEEIAGGLTEISAIYESVDEP--EEALKLLQRAMKLLEDKPGQQST 412 (476)
Q Consensus 343 ~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~ 412 (476)
+|+-..|+..+++.++....... +.+......+...++......+++ ..-+++|+.+.++.++..+.+..
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 99999999999999977654310 111111223445555555556654 35678888888888866444444
Q ss_pred HH
Q 011858 413 IA 414 (476)
Q Consensus 413 ~~ 414 (476)
++
T Consensus 1795 l~ 1796 (2382)
T KOG0890|consen 1795 LG 1796 (2382)
T ss_pred HH
Confidence 44
No 308
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.41 E-value=0.0055 Score=54.48 Aligned_cols=99 Identities=21% Similarity=0.164 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
-+-+.-.+..++|+.|+..|.+++++ ++..+..+.+.+..+.+.+++..|+.-+.++++.. +.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---------P~ 70 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD---------PT 70 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC---------ch
Confidence 34566777889999999999999999 88888899999999999999999999999999874 44
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
...+|...|.+....+.+.+|...|+....+.++.+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 688999999999999999999999999998887764
No 309
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=96.41 E-value=0.77 Score=42.28 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHH
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDY-------EAALEHLVLASMAMI 279 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~ 279 (476)
.....+|...+.+|+|+.|...|+.+.+-+..... ....+.++-..|.+....+.. ++...+++.|...+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dka--w~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKA--WKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchh--HHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 35678999999999999999999999887654333 234555666666666666643 467778888877776
Q ss_pred Hc-----CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHHHH--HHcCChhHH
Q 011858 280 AN-----GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS---VASVFVRLADLY--HRTGKLRES 349 (476)
Q Consensus 280 ~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A 349 (476)
.. ........+....+.++...|.+.+|...+-+.....-. +... .+..+..+|.+| ........-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 62 222355667777888888999988887776666544210 0112 444555555555 111000000
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 350 KSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+......+.-+..-|.-|...|+...|+.+|.+++.++...
T Consensus 363 ----------------~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 363 ----------------LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ----------------chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 00022234444455788999999999999999999998754
No 310
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.40 E-value=0.0011 Score=55.82 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=79.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
+.-.+..|.+++|++.|..++.+ ++..+..+...+.+++++++...|+.-+..++.+-.. .+.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---------sa~ 183 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---------SAK 183 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcc---------ccc
Confidence 34455678899999999999998 8899999999999999999999999999999987433 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
-|-..+.....+|++++|...+..+.++.
T Consensus 184 ~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 184 GYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 67777888889999999999999998764
No 311
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.31 E-value=0.0035 Score=53.02 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+.-....+...+..|+ ++.|++.|..++.+ .|..+..+...+.++..+++...|+.-+..++.+.+.
T Consensus 113 qa~e~k~~A~eAln~G~-~~~ai~~~t~ai~l-----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGE-FDTAIELFTSAIEL-----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred HHHHHHHHHHHHhcCcc-hhhhhccccccccc-----------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence 34455666777888885 99999999999885 6777888999999999999999999999999999763
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
.. .-|-..|.....+|++++|...+..+.++
T Consensus 181 sa---------~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 181 SA---------KGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cc---------cccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 32 23677888899999999999999999886
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.26 E-value=0.39 Score=38.11 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=61.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011858 256 LICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVR 335 (476)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 335 (476)
..++.+-.-++|...|-++ + .......+.....+|..|. ..+.++++..+.+++++... ++.....++..
T Consensus 114 Yy~Wsr~~d~~A~~~fL~~----E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~s 183 (203)
T PF11207_consen 114 YYHWSRFGDQEALRRFLQL----E-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKS 183 (203)
T ss_pred HHHhhccCcHHHHHHHHHH----c-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHH
Confidence 3444554456677666543 1 1222345777788887776 67889999999999999543 24566889999
Q ss_pred HHHHHHHcCChhHHH
Q 011858 336 LADLYHRTGKLRESK 350 (476)
Q Consensus 336 la~~~~~~g~~~~A~ 350 (476)
|+.++..+|+++.|-
T Consensus 184 Las~~~~~~~~e~AY 198 (203)
T PF11207_consen 184 LASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHhcchhhhh
Confidence 999999999999885
No 313
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=96.18 E-value=0.3 Score=40.68 Aligned_cols=184 Identities=21% Similarity=0.233 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCChhH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICE-AKGDYEAALEHLVLASMAMIANGQDNEV 287 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 287 (476)
+..++.+....|+|++.+.+.++++...+.... .-.+.++.+|- ..|....+...+..........+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~-------eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~ 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTE-------EERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCH-------HHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH
Confidence 567889999999999999999999887322211 11333444442 2333444444443332222111111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHHHHHHc-----C-----ChhHHHHHHH
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD---NHPSVASVFVRLADLYHRT-----G-----KLRESKSYCE 354 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~~~ 354 (476)
..+-...-. =-++=......++.+.....-+ +.......+-..|..|.-. | -.++|...|+
T Consensus 77 ~~i~~yk~k------ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~ 150 (236)
T PF00244_consen 77 KLIKDYKKK------IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYE 150 (236)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhh
Confidence 111111111 1123334455555555443211 1112233333445555422 1 2367899999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhc
Q 011858 355 NALRIYARPVPGTTAEEIAGGLTEISAIY-ESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+|+.++.... .+.+|.......+.+..| .-.|+.++|+...++++...-..
T Consensus 151 ~A~~~a~~~L-~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 151 EALEIAKKEL-PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHS-CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHhccc-CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999998854 445555555555555555 55899999999999988776544
No 314
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.16 E-value=0.16 Score=33.03 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 378 EISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
.-|.-+....+.++|+..++++++...+. .....++-.+..+|...|+|.+.+++..+-+++.++..++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~----~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDR----EDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33444557788899999999999876654 2445777788999999999999999999999998887664
No 315
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.15 E-value=1.1 Score=41.33 Aligned_cols=110 Identities=10% Similarity=-0.006 Sum_probs=77.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHH
Q 011858 65 TDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPAL 144 (476)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (476)
.+...++|....+|+.+.+.+..+ . +++..+.|++.+..+ |..+.+|.......+...+|+.-..+|
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F-----------P~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF-----------PSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC-----------CCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455678999999999999988777 3 899999999888754 555667888888888899999999999
Q ss_pred HHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 145 EKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 145 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
.+++.-.-.. + ++ ...+..+....|+...+....-++.+....
T Consensus 77 ~RCLvkvLnl----D----LW-~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~ 119 (656)
T KOG1914|consen 77 SRCLVKVLNL----D----LW-KLYLSYVRETKGKLFGYREKMVQAYDFALE 119 (656)
T ss_pred HHHHHHHhhH----h----HH-HHHHHHHHHHccCcchHHHHHHHHHHHHHH
Confidence 9987653210 0 01 122334445556666655555555555444
No 316
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.93 E-value=0.029 Score=30.77 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 415 GIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
.++..||.+-...++|++|+.-|++++++.++.-.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57788999999999999999999999999887644
No 317
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.89 E-value=0.86 Score=38.06 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=101.2
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHV-QAMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..++.+....|+|++.+.+.++++.... .....-...++.+|- ..|....+...+..........+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~-------eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-- 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP-------ELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEK-- 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhH--
Confidence 67889999999999999999999998722 122223334444442 23444445555444443333322110
Q ss_pred HHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 011858 246 EESADRRLMALICEAKGDY-EAALEHLVLASMAMIA-----NGQDNEVAAIDVSIGNIYLSL-----C-----RFDEAVF 309 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~l~~~~~~~-----g-----~~~~A~~ 309 (476)
....+-....+. ++-.......+.++.. ..+.......+-..|..|... | -.+.|..
T Consensus 75 -------~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 75 -------QVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 011111111111 1222333333333332 112223333344455555432 1 2378999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHH
Q 011858 310 SYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRIY 360 (476)
Q Consensus 310 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 360 (476)
.|++|++++.....+.+|.......+.+..|.. .|+.++|+...+++++..
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999997778888888888888877654 899999999888887754
No 318
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.89 E-value=1.2 Score=40.00 Aligned_cols=188 Identities=13% Similarity=0.007 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----------------------CCChhHHHHHHHHHHHHHHc
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN-----------------------GQDNEVAAIDVSIGNIYLSL 301 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~ 301 (476)
+..+.++..++.++..+|+.+.|.+++++|+-.++.. ..+.....++......+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3456678999999999999999999999998665411 01223445666777888899
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q 011858 302 CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA 381 (476)
Q Consensus 302 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 381 (476)
|-+..|+++.+-.+.+ +...+-..++..+-....+.++++--+.+++.......+. .........+.++.
T Consensus 117 G~~rTAlE~~KlLlsL------dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~----~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSL------DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN----WLSLLPNFAFSIAL 186 (360)
T ss_pred CcHHHHHHHHHHHHhc------CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh----hhhhCccHHHHHHH
Confidence 9999999999998887 1111223445555555667788877777777655421110 00112345667777
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHHHHhccC-------------------------CCchHHHHHHHHH
Q 011858 382 IYESVDEP---------------EEALKLLQRAMKLLEDKPG-------------------------QQSTIAGIEARMG 421 (476)
Q Consensus 382 ~~~~~g~~---------------~~A~~~~~~a~~~~~~~~~-------------------------~~~~~~~~~~~l~ 421 (476)
++...++- ++|...+.+|+...|.... ...........+.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 266 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKLGISPDSSVSNHPHFSPSSWSSEPPSDSLKLLT 266 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHhccccchhhhcCCCCcccccccCCchhHHHHHH
Confidence 77777777 8999999998876543210 0011112445566
Q ss_pred HHHHHhh----cHHHHHHHHHHHHH
Q 011858 422 VMFYMVG----RYEEARSSFESAIA 442 (476)
Q Consensus 422 ~~~~~~g----~~~~A~~~~~~a~~ 442 (476)
.+|.... +-.+.+.+++.++.
T Consensus 267 ~lYv~R~~~LWk~~~~l~wL~~~~~ 291 (360)
T PF04910_consen 267 ELYVERSKDLWKEPEVLSWLEDNAE 291 (360)
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHH
Confidence 6666443 23677788887764
No 319
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.86 E-value=0.14 Score=36.05 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=60.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhcCCCCCchH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC----RFDEAVFSYQKALTVFKSSKGDNHPSV 329 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~ 329 (476)
.+.-++..|++-+|++..+..+.. .+........+...|.++..+. +.+-=..++.-+++-+.+.. .-.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~---h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR---HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH---ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccChhH
Confidence 366788999999999999987553 3333333355666677765543 33333333443443333221 116666
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
+..++.+|.-+.....|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777777665555566666666665544
No 320
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.97 Score=38.22 Aligned_cols=135 Identities=16% Similarity=0.022 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC
Q 011858 77 FLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG 156 (476)
Q Consensus 77 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 156 (476)
.-+..+......| ++.+|...+..++.. .++...+...++.+|...|+.+.|...+...-....
T Consensus 136 ~~~~~~~~~~~~e-~~~~a~~~~~~al~~-----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~---- 199 (304)
T COG3118 136 EALAEAKELIEAE-DFGEAAPLLKQALQA-----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ---- 199 (304)
T ss_pred HHHHHhhhhhhcc-chhhHHHHHHHHHHh-----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----
Confidence 3456667778888 489999999998886 345567888999999999999999888876422211
Q ss_pred CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 157 ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 157 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
.+.... +...-..+.......+....-+++ . .+|....+-+.+|..+...|+.+.|.+.+-..+...
T Consensus 200 ~~~~~~----l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 200 DKAAHG----LQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred hhHHHH----HHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 111110 111122333333444333332222 2 167777888999999999999999998887777655
Q ss_pred HhcC
Q 011858 237 RAHS 240 (476)
Q Consensus 237 ~~~~ 240 (476)
....
T Consensus 267 ~~~~ 270 (304)
T COG3118 267 RGFE 270 (304)
T ss_pred cccc
Confidence 4433
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.61 Score=35.84 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=90.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 011858 213 AEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDV 292 (476)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (476)
|.-|+..+.-+++-..|..++++... +..++|+..|... ++.+....-..+..
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~-----------------------~k~d~Alaaf~~l----ektg~g~YpvLA~m 98 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQE-----------------------NKTDDALAAFTDL----EKTGYGSYPVLARM 98 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHc-----------------------CCchHHHHHHHHH----HhcCCCcchHHHHH
Confidence 33455555666666666666655433 4455566555543 33444444455667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchH--HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSV--ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 293 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
..+.+....|+...|+..|.++-.. ...|.. -.+...-+.++...|.|+.-....+. +. ++.++
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep---La-----~d~n~ 164 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP---LA-----GDGNP 164 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh---cc-----CCCCh
Confidence 7888888888888888888876543 112222 22344445666777777665443322 11 34455
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 371 EIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
....+...||..-.+.|++.+|...|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5666777788888888888888888887665
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.59 E-value=1.5 Score=38.76 Aligned_cols=150 Identities=9% Similarity=0.041 Sum_probs=98.0
Q ss_pred cCCChhHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCR------------FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE 348 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 348 (476)
...+|....++..+....-..-. .+.-+.+|++|++. ++.....+..+-.+..+..+.++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHH
Confidence 33555555566655554433322 34556677777776 56666777777777777778888
Q ss_pred HHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC-----------CchHHHHH
Q 011858 349 SKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ-----------QSTIAGIE 417 (476)
Q Consensus 349 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~ 417 (476)
..+-+++++..... ...+-..|...-......-.++.....|.+++......... ...+..++
T Consensus 84 l~~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 84 LAKKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 88888888876332 22333333333333334456889999999998887665332 12455667
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 418 ARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
..+.......|-.+.|+..++-.+++.
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 778888889999999999999988864
No 323
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.59 E-value=0.049 Score=29.89 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSK 322 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 322 (476)
.++..+|.+-...++|++|+.-|++++++.++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888876653
No 324
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.58 E-value=0.015 Score=51.88 Aligned_cols=99 Identities=15% Similarity=0.028 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 124 LHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
+-..+...+..+.|+.|+..|.+++++.+... ..+.+.+..+...+++..|+.-+.++++. +|
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca---------~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP 69 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCA---------IYFANRALAHLKVESFGGALHDALKAIEL--------DP 69 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcce---------eeechhhhhheeechhhhHHHHHHhhhhc--------Cc
Confidence 34556677788899999999999999875321 23667778889999999999999999987 68
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
....+|+..|.+....+++.+|...|+....+.+..
T Consensus 70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 888999999999999999999999999988776553
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=1.1 Score=43.57 Aligned_cols=51 Identities=14% Similarity=0.013 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 98 YAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 98 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
.|.-|+.+++.... +......++...|..++..|++++|...|-+.+...+
T Consensus 349 ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 349 LYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred hHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 46667777776643 4556778889999999999999999999999987653
No 326
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=1.5 Score=37.59 Aligned_cols=134 Identities=20% Similarity=0.165 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 011858 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA 260 (476)
Q Consensus 181 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 260 (476)
++-++-+.+.++-.++.+| .....+++.+.|..|.+.|+-+.|.+.+.+..+..-..+.. .........+|..|..
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhcc
Confidence 4445556666666555433 34677899999999999999999999999988876665544 3444555566666654
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 261 KGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 261 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 321 (476)
.+--.+..+++-.++++.++....-..-...|.......+|.+|-..|-.++..+...
T Consensus 157 ---~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 157 ---HDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred ---HHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 4444555666667777788766666666667778888889999999998888765443
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.91 Score=34.93 Aligned_cols=134 Identities=14% Similarity=0.059 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCc
Q 011858 79 LKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGAD 158 (476)
Q Consensus 79 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 158 (476)
+..+..+...++ .++|+..|...-+- |-...-..+....+.+....|+...|+..|.++-...+......
T Consensus 62 flaAL~lA~~~k-~d~Alaaf~~lekt---------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r 131 (221)
T COG4649 62 FLAALKLAQENK-TDDALAAFTDLEKT---------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR 131 (221)
T ss_pred HHHHHHHHHcCC-chHHHHHHHHHHhc---------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh
Confidence 344445555664 77777776654332 22223344678899999999999999999999866543211111
Q ss_pred hhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 159 HALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
+ .+...-+.++...|.|++-.... +.+.++.++....+.-.||..-++.|++..|.+.|.+...
T Consensus 132 d-----~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 D-----LARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred H-----HHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 23456677778888877654433 3334566788888889999999999999999999998865
No 328
>PRK14707 hypothetical protein; Provisional
Probab=95.36 E-value=5.2 Score=43.73 Aligned_cols=365 Identities=10% Similarity=0.019 Sum_probs=194.7
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHH--HHHHHHHHHhcCChhHHHHHHHHhhhhccccCCC
Q 011858 80 KLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMS--LHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGA 157 (476)
Q Consensus 80 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 157 (476)
.++.++-..++ |..+..+-..+..+...... ++..... -..++.++-..+++.+...+-.-+..+.......
T Consensus 836 ~VANaLNALSK-WPd~~~Cr~AA~aLA~RLa~-----e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d 909 (2710)
T PRK14707 836 HVATVLNAMSK-WPDNAVCAAAAGAMAERLAD-----EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADE 909 (2710)
T ss_pred HHHHHHHHhcc-CCCchHHHHHHHHHHHHHhc-----ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcC
Confidence 34445555554 77776666666666665533 2322222 3346777777788877666666666555433222
Q ss_pred chhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 011858 158 DHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGE--TCRYLAEAHVQAMQFDKAEELCKKTLEI 235 (476)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (476)
...... -.-..++.++....+|.++-.+-.-+..+...+.. ++.... .-..+++++..+++|.+...+-.-+..+
T Consensus 910 ~~Lrqa-l~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aL 986 (2710)
T PRK14707 910 PELRKA-LSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDAL 986 (2710)
T ss_pred HHHHhh-ccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 222111 12457788888999999877776666666666522 233333 3345777778888888777766666666
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 236 HRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAA--IDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
...............-..+++++..+.++.+.-.+-.-+..+.......+.... --..+++++....+|.+.-.+-.-
T Consensus 987 A~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707 987 AERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred HHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence 655433211222222345677777777776655555555555555444443322 234567777777777665555555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
+..+...+..+..-.....-..++.++...-++.+.-.+-+-++.+...+. .............++.+.....++....
T Consensus 1067 a~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~-~~~~l~~~fd~q~vA~~LNALSKWp~~~ 1145 (2710)
T PRK14707 1067 ASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLT-DDAGLRHVFDPINVSQALNALSKWPGTQ 1145 (2710)
T ss_pred HHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc-cccchhccCCHHHHHHHHHHHhcCCCch
Confidence 555544432111111222334556666666667666666666666655543 1122222222333444444444443322
Q ss_pred HHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 394 KLLQRAMKLLEDKPGQQS-TIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
.+=.-+..+......+.. ..+..-..++..+-...++-+.-.+-+-++.+....|....++
T Consensus 1146 ~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~ 1207 (2710)
T PRK14707 1146 ACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPW 1207 (2710)
T ss_pred HHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCc
Confidence 222222333322211110 0111223456666666667676777777777777777766555
No 329
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.31 E-value=0.43 Score=41.98 Aligned_cols=117 Identities=17% Similarity=0.074 Sum_probs=79.6
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
.+........-.++..+|.-|...|+++.|++.|-++-+.+.. .......+.++..+-...|+|..-..+..++.
T Consensus 140 yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 140 YKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3333444556778889999999999999999999998887754 35567788888888888999988888877776
Q ss_pred HHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 358 RIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
....... .........+...-|.+.+.+++|..|..+|-.+.
T Consensus 215 st~~~~~-~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 215 STPDANE-NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hCchhhh-hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6521000 00011112344445555666678888888876553
No 330
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.12 E-value=0.69 Score=35.30 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
......+..+..+-...++.+++...+...--+ .|.....-..-|.++...|++.+|+..++...+-..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--- 75 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP--- 75 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC---
Confidence 344556666777777788888887777665555 677788888888888889999999888888654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPE 390 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~ 390 (476)
....+--.++.|+..+|+.+
T Consensus 76 ------~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 76 ------GFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ------CChHHHHHHHHHHHHcCChH
Confidence 22344555677777777753
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.11 E-value=0.068 Score=49.01 Aligned_cols=102 Identities=17% Similarity=0.087 Sum_probs=79.5
Q ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011858 217 VQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGN 296 (476)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 296 (476)
...|+...|+.++..++...+...+.. ..+++.+....|-...|-.++.+++.+. ......++.+|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~-------~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~g~ 684 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVP-------LVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSLGN 684 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhccc-------HHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhcch
Confidence 347899999999999998777655542 6788999999999999999999987765 122345678999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADL 339 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 339 (476)
.+..+.+.+.|++.+++|++. .+....+-..|-.+
T Consensus 685 ~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 685 AYLALKNISGALEAFRQALKL--------TTKCPECENSLKLI 719 (886)
T ss_pred hHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHH
Confidence 999999999999999999987 45545444444433
No 332
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.04 E-value=2.6 Score=38.10 Aligned_cols=139 Identities=9% Similarity=-0.060 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHH-----HHHHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCR-FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESK-----SYCENA 356 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-----~~~~~a 356 (476)
+....+.-+..-|.-+.+.|. -++|+..++.+++.. +....+.+.. .... ...|.+|+ ..+-+.
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--------~yD~ec~n~v-~~fv-Kq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--------NYDIECENIV-FLFV-KQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--------cccHHHHHHH-HHHH-HHHHHHHHhhhhHHHHHHH
Confidence 344556666777888888887 788999988888762 2222221111 1111 11122222 222222
Q ss_pred HHHHcCCCCCCChHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHH
Q 011858 357 LRIYARPVPGTTAEEIAGGLT--EISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEAR 434 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 434 (476)
.....+.+..+-.......-+ .=|..+..+|+|.++.-+-.=..++.|.. .++..+|.+.....+|++|.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~--------~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSP--------QAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcH--------HHHHHHHHHHHHHhhHHHHH
Confidence 222222110111111122223 33566778999999998888777887743 88999999999999999999
Q ss_pred HHHHH
Q 011858 435 SSFES 439 (476)
Q Consensus 435 ~~~~~ 439 (476)
.++..
T Consensus 516 ~~l~~ 520 (549)
T PF07079_consen 516 EYLQK 520 (549)
T ss_pred HHHHh
Confidence 88765
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.83 E-value=0.065 Score=27.81 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 415 GIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.++..+|.++...|++++|..++++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778999999999999999999999864
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.80 E-value=1.7 Score=34.73 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 300 SLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 300 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
....-++|...|-++-. ...-..+.....||..|. ..+.++++.++-+++++.... ......++..|
T Consensus 118 sr~~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~-----~~~n~eil~sL 184 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD-----DNFNPEILKSL 184 (203)
T ss_pred hccCcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC-----CCCCHHHHHHH
Confidence 33334566665544322 234466888899998887 678999999999999997652 12336789999
Q ss_pred HHHHHHcCCHHHHHH
Q 011858 380 SAIYESVDEPEEALK 394 (476)
Q Consensus 380 a~~~~~~g~~~~A~~ 394 (476)
+.++..+|+++.|--
T Consensus 185 as~~~~~~~~e~AYi 199 (203)
T PF11207_consen 185 ASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHhcchhhhhh
Confidence 999999999998853
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.79 E-value=0.041 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
.++..+|.++...|++++|+..+++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3578899999999999999999999987643
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.75 E-value=1.6 Score=38.80 Aligned_cols=109 Identities=8% Similarity=-0.024 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCC--------ch-hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGA--------DH-ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
..=|..++++++|..|..-|..+++++.+.... ++ ......+...+..||..+++.+-|+....+.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 344556667777777777777777766432111 11 1122244677899999999999999999999887
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
+|....-+...|.++..+.+|.+|.+.+.-+.-++--.++
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~ 297 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG 297 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6777788899999999999999999888877766655543
No 337
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=3 Score=37.03 Aligned_cols=219 Identities=15% Similarity=0.033 Sum_probs=139.0
Q ss_pred HHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC---------
Q 011858 86 IASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG--------- 156 (476)
Q Consensus 86 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 156 (476)
...| -+.+-..+.-++++....... ......++.+...++..|. ++...+.+-+........
T Consensus 41 i~kg-~~tke~r~I~R~lr~l~~~r~------kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t 111 (493)
T KOG2581|consen 41 IDKG-VYTKEPRFILRALRLLPSTRR------KLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNT 111 (493)
T ss_pred Hhcc-ccccchHHHHHHHHhhhhhHh------hhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCccccccccc
Confidence 4455 366667777788887766633 3455666677666666653 555555444322211000
Q ss_pred ----C-chhHHHHHhHhhHHHH--HHHcCChhhHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHhccHHHHHH
Q 011858 157 ----A-DHALAKFSGYMQLGDT--CSMLGQVDRSIGCYEEGLKIQIEALGE--TDPRVGETCRYLAEAHVQAMQFDKAEE 227 (476)
Q Consensus 157 ----~-~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 227 (476)
. .+....+.+|..+-.. ++.+.++.+|..+-+..+.-.... .. -+-..+.+|+.+..+|...|+...-..
T Consensus 112 ~~a~~~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs 190 (493)
T KOG2581|consen 112 QSALKRKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRS 190 (493)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 0 1111123444443333 344588888888777665432110 00 023356688889999999999887777
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 011858 228 LCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEA 307 (476)
Q Consensus 228 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 307 (476)
.+...+....-..+. ...+...+.+-..|...+.|+.|.....++.- -........+..++.+|.+..-+++|..|
T Consensus 191 ~l~~~lrtAtLrhd~--e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 191 FLHALLRTATLRHDE--EGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred HHHHHHHHhhhcCcc--hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHH
Confidence 777777665444343 35666677888899999999999888776521 12223347788899999999999999999
Q ss_pred HHHHHHHHHHH
Q 011858 308 VFSYQKALTVF 318 (476)
Q Consensus 308 ~~~~~~al~~~ 318 (476)
.+++-.|+...
T Consensus 267 ~~~~~qa~rka 277 (493)
T KOG2581|consen 267 LEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHhC
Confidence 99999998873
No 338
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.65 E-value=1.1 Score=39.88 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHH
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ-----DNEVAAIDVSIGNIYLSLCRF---DEAVFSYQKALTVF 318 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~ 318 (476)
.+..+...|.+......|++|+.++-.|-+.+...+. ....+..-..+.++|+.+.+. ..|..-+..+-+-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3445666778888888889888888777665543221 122344445567778877654 45655555555555
Q ss_pred HhcCCC-----------CCchH---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH---
Q 011858 319 KSSKGD-----------NHPSV---ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA--- 381 (476)
Q Consensus 319 ~~~~~~-----------~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~--- 381 (476)
...+|+ ..|.. ...+..-|.+.+.+|+-++|.++++.+.....+.. .++ .....+..+|.
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk--i~d-~~lsllv~mGfees 318 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK--IND-ETLSLLVGMGFEES 318 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee--ccc-hHHHHHHHcCCCch
Confidence 544443 33433 34455668899999999999999999988776642 111 12223333321
Q ss_pred -----HHHHcCCHHHHHHHHHH
Q 011858 382 -----IYESVDEPEEALKLLQR 398 (476)
Q Consensus 382 -----~~~~~g~~~~A~~~~~~ 398 (476)
+-...|+.+.|.+++.+
T Consensus 319 daRlaLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 319 DARLALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHHHHHhccccHHHHHHHHHH
Confidence 12235777888777643
No 339
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.57 E-value=4.1 Score=38.23 Aligned_cols=176 Identities=10% Similarity=0.016 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
....|......-...|+++...-.+++++.-+. .....|...+......|+.+-|...+..+.++. .
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-------~ 362 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCA------LYDEFWIKYARWMESSGDVSLANNVLARACKIH-------V 362 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------C
Confidence 344566666677788999999999998866442 234567777888888899999999999888885 3
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+....+...-+.+-...|+++.|...++....-.. ....+-..-......+|+.+.+.. +..........
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p---------g~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~ 432 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP---------GLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEG 432 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC---------chhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccc
Confidence 44556666677778889999999999999887652 234444455556677888888775 33333333222
Q ss_pred cCCCchHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFY-MVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~ 445 (476)
..........+...++... -.++.+.|...+.+++++..
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 1333444455556666544 46788888888888877543
No 340
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.57 E-value=1.1 Score=31.66 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=60.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 336 LADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 336 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
.+.-++..|++-+|++..+..+....+. . .....+..-|.++.. ..+.+-=..++.-+++.+.....-.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~---~---~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED---E---SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC---C---chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 4667889999999999999999876542 1 112445555666544 34555555556666665555544334
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.-+..++.+|.-+-....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3356666666655555555555555555543
No 341
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.47 E-value=3.6 Score=37.15 Aligned_cols=236 Identities=11% Similarity=0.087 Sum_probs=131.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
+...++|+.....+...++-+.|+...++++...+. ....++.+|....+-+.-..+|+++.+...+.
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------------hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 445667888888888999999999999999888762 25778888888888777778888877654332
Q ss_pred hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 198 LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
+........ -...|+++...+++-+-.. ....++..+-....+..-.+.|...|.++..
T Consensus 367 ys~~~s~~~---------s~~D~N~e~~~Ell~kr~~-----------k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk- 425 (660)
T COG5107 367 YSMGESESA---------SKVDNNFEYSKELLLKRIN-----------KLTFVFCVHLNYVLRKRGLEAARKLFIKLRK- 425 (660)
T ss_pred Hhhhhhhhh---------ccccCCccccHHHHHHHHh-----------hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc-
Confidence 111100000 0002333222222211111 0111122223333344445566666665532
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
.+.......+++.+ .-|...|++.-|...|+-.+.. .++........-..+...++-+.|..+|+.++
T Consensus 426 ---~~~~~h~vyi~~A~-~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 426 ---EGIVGHHVYIYCAF-IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred ---cCCCCcceeeeHHH-HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 22111111111111 2245678888888888877766 33333333334445567788888888888887
Q ss_pred HHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 358 RIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
....+. ....+|..+-..-..-|+...+...-++..+..++
T Consensus 494 ~r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 494 ERLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 765432 23455666666666667776666655555555444
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.46 E-value=3 Score=38.62 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=84.3
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 011858 172 DTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADR 251 (476)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 251 (476)
......++++++....+.. ++.+.+ | ..-...++..+...|..+.|+...+.--. .
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i-----~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------------r 324 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNI-----P--KDQGQSIARFLEKKGYPELALQFVTDPDH----------------R 324 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------------H
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccC-----C--hhHHHHHHHHHHHCCCHHHHHhhcCChHH----------------H
Confidence 3445567777766655311 111110 1 12355667777788888887766544321 2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 252 RLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 252 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
=.+..+.|+++.|.+..++. .....|..||.....+|+++-|+++|+++-+.
T Consensus 325 ---FeLAl~lg~L~~A~~~a~~~-----------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~-------------- 376 (443)
T PF04053_consen 325 ---FELALQLGNLDIALEIAKEL-----------DDPEKWKQLGDEALRQGNIELAEECYQKAKDF-------------- 376 (443)
T ss_dssp ---HHHHHHCT-HHHHHHHCCCC-----------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------
T ss_pred ---hHHHHhcCCHHHHHHHHHhc-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------
Confidence 23446788888887766432 12447888999999999999999998886433
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
..|..+|...|+.+.=.++.+.+... + -++..-.++...|+.++.++.+.++
T Consensus 377 --~~L~lLy~~~g~~~~L~kl~~~a~~~------~--------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 --SGLLLLYSSTGDREKLSKLAKIAEER------G--------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHCT-HHHHHHHHHHHHHT------T---------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --cccHHHHHHhCCHHHHHHHHHHHHHc------c--------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556677778765544444333321 1 0111223344567777766666543
No 343
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.41 E-value=0.37 Score=28.90 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFV 334 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 334 (476)
+++.+|..+.+.|+|++|..+.+.++++ .|....+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHH
Confidence 5678899999999999999999999998 565554443
No 344
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.32 E-value=3 Score=35.67 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
..+.+...||.+|...++|..|...+.-. .........+.-.....+..+|.+|...++..+|..+..++--......+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 45667889999999999999987765432 11110111111234556788999999999999999999888554444444
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKAL 315 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 315 (476)
+......-...|.++-..++|-+|-..|.+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556777777788877766665543
No 345
>PRK14707 hypothetical protein; Provisional
Probab=94.26 E-value=10 Score=41.65 Aligned_cols=325 Identities=9% Similarity=0.015 Sum_probs=179.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhH
Q 011858 126 VLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRV 205 (476)
Q Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 205 (476)
.++.++-...++.+...+-.-+..+............. .--..+++++...++|.++..+-.-+..+...+.. ++..
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~a-f~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~L 870 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREA-FDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPEL 870 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHh-cCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--Chhh
Confidence 34455555555555444444444443322211111111 11356788888999999888888887777766522 3333
Q ss_pred HHH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 206 GET--CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 206 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
... -..+++++..+++|.+...+-.-+..+............+..-..+++++..+.++.++-.+-.-+..+......
T Consensus 871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~ 950 (2710)
T PRK14707 871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD 950 (2710)
T ss_pred hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc
Confidence 222 345677777888888777777777777666544333333334456777777777777665555555555555555
Q ss_pred ChhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 284 DNEVAAID--VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 284 ~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
++.....+ ..+++++..+++|.+.-.+-.-+..+...+..+..-.....-..++.++..+.++.+.-.+-+-+..+..
T Consensus 951 d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~ 1030 (2710)
T PRK14707 951 DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAA 1030 (2710)
T ss_pred ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 54443333 4567777888888776666666666655442111111122234556666667777665555555555544
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS-TIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
.+. ++.......--..++.++....+|.+.-.+-.-+..+......+.. ..+..-..++.++....++-+.-.+-+.+
T Consensus 1031 rLa-~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707 1031 RLS-NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred Hhc-cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 431 1101111122344666666677776555544444444443311111 01122235677777777777777777788
Q ss_pred HHHHHHhcccCchh
Q 011858 441 IAKLRASGERKSAF 454 (476)
Q Consensus 441 ~~~~~~~~~~~~~~ 454 (476)
+.+...++.....+
T Consensus 1110 ~~LA~rL~~~~~l~ 1123 (2710)
T PRK14707 1110 SALAKRLTDDAGLR 1123 (2710)
T ss_pred HHHHHHhccccchh
Confidence 88877776554443
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.25 E-value=3.7 Score=36.38 Aligned_cols=164 Identities=15% Similarity=-0.008 Sum_probs=102.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHcCC--C--cchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhH
Q 011858 64 FTDASLDNPDLGPFLLKLARDTIASGE--G--PSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEE 139 (476)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~g~--~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (476)
+.....++|.....++.++...-..-. . -.......++-+.++++... .+|.....+..+-.......+.++
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~----~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK----HNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCCHHH
Confidence 344567899999999998876554421 0 12233444455555555443 134444455555555566667788
Q ss_pred HHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCC----------chhHHHHH
Q 011858 140 AVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGET----------DPRVGETC 209 (476)
Q Consensus 140 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~ 209 (476)
...-+++++...+.. .... ..|...-...+..-.++.....|.+++.......... ......++
T Consensus 84 l~~~we~~l~~~~~~----~~LW--~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 84 LAKKWEELLFKNPGS----PELW--REYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHHHCCCC----hHHH--HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 888888888875421 1111 1122222222334467899999999998877654332 23455677
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 011858 210 RYLAEAHVQAMQFDKAEELCKKTLEIHR 237 (476)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 237 (476)
..+.......|..+.|+..++-.+++.-
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 7888888899999999999999998764
No 347
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=94.22 E-value=2.4 Score=45.05 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHh
Q 011858 346 LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD--------------------EPEEALKLLQRAMKLLED 405 (476)
Q Consensus 346 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~a~~~~~~ 405 (476)
+++++.+|.++.....+.. ...-..++...++.++.... .-.++..++.+++.....
T Consensus 361 ~~~~l~~Y~~~~~~~~~~~---p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 361 YEKALSLYSRSTNDTSEYV---PQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred HHHHHHHHHHhhccccccC---cchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence 4667777777654433321 22234567777777777777 778888888888877654
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
. -.......++..++.+|...|-..++.-+++.++..+-
T Consensus 438 ~-l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 438 D-LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred h-CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 3 24455678899999999999998888888888776653
No 348
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.18 E-value=1.3 Score=33.84 Aligned_cols=87 Identities=15% Similarity=0.019 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
....+..+..+-...++.+++...+.-. .. -.|.....-..-|.++...|+|.+|+..++...+- .
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~AL-rv-----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--------~ 74 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDAL-RV-----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--------A 74 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHH-HH-----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--------C
Confidence 4445667777778888999888877643 32 24555666777899999999999999999997544 6
Q ss_pred chHHHHHHHHHHHHHHcCChh
Q 011858 327 PSVASVFVRLADLYHRTGKLR 347 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~ 347 (476)
+....+.-.++.|+..+|+.+
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred CCChHHHHHHHHHHHHcCChH
Confidence 667777888888988888754
No 349
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.03 E-value=4.2 Score=36.20 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK- 406 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~- 406 (476)
..-.++..+|.-|...|+++.|++.|-++...+.. ....+..+.++-.+-...|+|..-..+..++.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 44678899999999999999999999998887654 34567888888899999999998888888887663111
Q ss_pred --cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 407 --PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 407 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
..... ..+...-|.+...+++|+.|..+|-.+.
T Consensus 222 ~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 222 NLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 01111 2344455666677779999988876653
No 350
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=94.02 E-value=2.3 Score=33.14 Aligned_cols=156 Identities=10% Similarity=0.162 Sum_probs=90.0
Q ss_pred ccHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011858 220 MQFDKAE-ELCKKTLEIHRAHSEPASLEESADRRLMALICE-----AKGDYEAALEHLVLASMAMIANGQDNEVAAIDVS 293 (476)
Q Consensus 220 g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (476)
|+|-+++ +.|+.+..+++.+-+.. ....+.+.+|..+. ..+++..|++.+..+-. .....+..+
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~ 110 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRY 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhh
Confidence 3444443 34666666666655542 22333445554443 34578889999887743 233445566
Q ss_pred HHHHHHHc-----C--CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH------------------------
Q 011858 294 IGNIYLSL-----C--RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR------------------------ 342 (476)
Q Consensus 294 l~~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------ 342 (476)
+|.++..- + +..+|++++.++-++ + ...+.++|...|..
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl------~----~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~ 180 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDL------E----DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL 180 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccC------C----CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence 67666542 2 367888888888765 1 13334444444432
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhc
Q 011858 343 TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 343 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..+.++|.++.-+|.++ ....+..++.+.|.. -.+-++|..+-.+|.++..+.
T Consensus 181 ~kDMdka~qfa~kACel-----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACEL-----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hHhHHHHHHHHHHHHhc-----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 24456666666666554 135566677776654 236778888888888877654
No 351
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.94 E-value=3.6 Score=35.21 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
....+...||.+|.+.++|..|-..+.-. ...... ...+.......+..+|.+|...++..+|..+..++--+....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~-~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQ-KAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-Ccccch-hhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 45677889999999999999887765322 111100 011233456778899999999999999999998876554443
Q ss_pred CCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 408 GQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.+.......-.--|+++-..++|-+|...|-+...
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333457777788888888777765543
No 352
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.86 E-value=8.7 Score=39.29 Aligned_cols=102 Identities=17% Similarity=0.061 Sum_probs=59.3
Q ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHH
Q 011858 83 RDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALA 162 (476)
Q Consensus 83 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 162 (476)
.++.... .|++|+..|++....+. | ..+--++.+.+|.....+-.-..--+.|.+|+..+....+......
T Consensus 483 ~~~~~~~-~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (932)
T PRK13184 483 DAFLAEK-LYDQALIFYRRIRESFP-------G-RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPL 553 (932)
T ss_pred HHHHhhH-HHHHHHHHHHHHhhcCC-------C-cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCch
Confidence 3344442 45666665555444321 1 2233457778887776543322222445555554443332222211
Q ss_pred HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 163 KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
+ |...|.+|..+|++++-++.|.-|++.+..
T Consensus 554 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 554 --E-YLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred --H-HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 1 788889999999999999999999987644
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.81 E-value=0.088 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHH
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCE 354 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~ 354 (476)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.74 E-value=0.091 Score=26.02 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 011858 122 MSLHVLAAIYCSLGKFEEAVPALEK 146 (476)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (476)
.+...+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999998763
No 355
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=6.6 Score=37.29 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
...++.+-|.-.++..+|..++++|...+.....- ..+...+....+++.+|..+.+.+.|.+++++|-+..++.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--- 427 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--- 427 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc---
Confidence 34556677778888999999999999988764322 2234457788889999999999999999999998875442
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
......+-.+....|+-++|+...........+
T Consensus 428 ------~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 428 ------PLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ------HHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 334444555666778888999888877766544
No 356
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.66 E-value=1.9 Score=30.96 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc-------hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP-------SVASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
+..+|...++.+++-.++-+|++|+.+.++....+.. -......+||..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888888887776311111 123456789999999999999999998776655443
No 357
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=93.55 E-value=2.2 Score=31.48 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 011858 344 GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVM 423 (476)
Q Consensus 344 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (476)
+.-..-...+++++..+.....-.+......++...+... ..+.+.|...... +.....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 4556667789999988865321223444455555555432 2777777755432 4445567889999999
Q ss_pred HHHhhcHHHHHHHHHHHH
Q 011858 424 FYMVGRYEEARSSFESAI 441 (476)
Q Consensus 424 ~~~~g~~~~A~~~~~~a~ 441 (476)
+...|++++|.+.|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999999875
No 358
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.47 E-value=13 Score=39.93 Aligned_cols=228 Identities=15% Similarity=0.055 Sum_probs=128.4
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh------------------------
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQA------------------------ 219 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------ 219 (476)
.+....+|..+...|++.+|+..|..|+...+.. .|.-..+.++-.++.+....
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 3557889999999999999999999999998874 44444444444443322211
Q ss_pred ---------------------------------------ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 011858 220 ---------------------------------------MQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA 260 (476)
Q Consensus 220 ---------------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 260 (476)
..+++++.+|.++.....+. .+ ......+...++.++..
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~-~p-~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY-VP-QLVYSEACLRFARFLVA 397 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc-Cc-chHHHHHHHHHHHHHHH
Confidence 11334444444443222111 11 22345556666777776
Q ss_pred hC--------------------CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 261 KG--------------------DYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320 (476)
Q Consensus 261 ~g--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 320 (476)
.. .-.++.+++.++.......-...+...++..++.+|...|-..++--+++.++..+-.
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 66 6777888888877655433345667889999999999999998888888887776533
Q ss_pred cCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC-CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 321 SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV-PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
............+..+...|.-..+.+. ........ .+........++..+-.+....+|+..+.++....
T Consensus 478 ~l~~~~~s~~~lL~~~~~~Ygi~~~~~~--------~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~L 549 (1185)
T PF08626_consen 478 GLIHWHQSYRSLLEELCKGYGISLDPES--------SSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLL 549 (1185)
T ss_pred ccCCcchHHHHHHHHHhccCcccCCccc--------cccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2100011111122222222221111110 00000000 00122233455666666677788888877777666
Q ss_pred HHHH
Q 011858 400 MKLL 403 (476)
Q Consensus 400 ~~~~ 403 (476)
+...
T Consensus 550 L~~~ 553 (1185)
T PF08626_consen 550 LRTY 553 (1185)
T ss_pred HHHH
Confidence 6544
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.38 E-value=4.8 Score=37.36 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=21.2
Q ss_pred HHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHH
Q 011858 131 YCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGC 186 (476)
Q Consensus 131 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 186 (476)
....++++++.+..+.. ++.+... . .-...++..+..+|..+.|+.+
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~--~------~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIP--K------DQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG----H------HHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCC--h------hHHHHHHHHHHHCCCHHHHHhh
Confidence 34567788876666421 1111111 0 1256677777888877777664
No 360
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.12 E-value=5 Score=34.23 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=91.1
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADL 339 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 339 (476)
.+++|++|++.+... +..+.+.|++..|.+...-.++.+.+.. .+.......+++.+
T Consensus 2 ~~kky~eAidLL~~G--------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------------ALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 457788887777655 3455566666666666655555555531 22223344566666
Q ss_pred HHHcCChh-HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHhcc
Q 011858 340 YHRTGKLR-ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA-----------MKLLEDKP 407 (476)
Q Consensus 340 ~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------~~~~~~~~ 407 (476)
....+.-+ +-..+.+++++..+. +.........+..+|..+.+.|++.+|..+|-.. +......
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~- 134 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK- 134 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-
Confidence 66554332 456677788877722 4445556788999999999999999999987322 1111111
Q ss_pred CCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 408 GQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
+..............-|...++...|...+..-.+.+
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2333333333334455667899999999888877763
No 361
>PRK10941 hypothetical protein; Provisional
Probab=92.81 E-value=2.1 Score=36.43 Aligned_cols=70 Identities=7% Similarity=-0.017 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
......+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.++|.+..|..-++..++.+++
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 345677788899999999999999999999998 7777888888999999999999999999999998754
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.79 E-value=2.6 Score=37.63 Aligned_cols=108 Identities=10% Similarity=0.099 Sum_probs=79.7
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc----------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD----------PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
-..=|..++.+++|..|..-|..+++++.+...-.. .....+...+..||..+++.+.|+....+.+.+.
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 344466778889999999999999998766321111 1112345678999999999999999999998776
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 237 RAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
+..... +...+.++..+.+|.+|-+.+--+.-++-..+
T Consensus 259 P~~frn--------HLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 259 PSYFRN--------HLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred cchhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 554332 66778899999999999988877766665555
No 363
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.76 E-value=2.5 Score=31.81 Aligned_cols=85 Identities=9% Similarity=-0.035 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
...+..+...-...++.+++...+...--+ .|.....-..-|.++...|++++|+..++...+-...
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~----- 76 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA----- 76 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-----
Confidence 344445555555677888877776655444 6677777777888888888888888888877653211
Q ss_pred ChHHHHHHHHHHHHHHHHcCCH
Q 011858 368 TAEEIAGGLTEISAIYESVDEP 389 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~ 389 (476)
.....-.++.|+..+||.
T Consensus 77 ----~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 77 ----PPYGKALLALCLNAKGDA 94 (153)
T ss_pred ----chHHHHHHHHHHHhcCCh
Confidence 133344456666666664
No 364
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.69 E-value=3.9 Score=31.91 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc-
Q 011858 270 HLVLASMAMIANGQDNEVAAIDVSIGNIYLS-----LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT- 343 (476)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 343 (476)
.|+.|..++...-+....+...+.+|..++. .++...|++.+..+-+. ....+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 4555555555555555556666777765543 45778888888887663 2345566667666532
Q ss_pred ----CC--hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH------------------------cCCHHHHH
Q 011858 344 ----GK--LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES------------------------VDEPEEAL 393 (476)
Q Consensus 344 ----g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------~g~~~~A~ 393 (476)
++ .++|++++.++.++-. ..+.+.|...|.. ..+.++|.
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~~-----------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~ 188 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLED-----------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL 188 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCCC-----------chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence 23 6788999988876521 2333344333332 24556666
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHHHHHhccc
Q 011858 394 KLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV----GRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
++-.+|-++. + ..+..++.+.|..- .+.++|..+-.+|.++.++....
T Consensus 189 qfa~kACel~--~-------~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k~ 240 (248)
T KOG4014|consen 189 QFAIKACELD--I-------PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRKN 240 (248)
T ss_pred HHHHHHHhcC--C-------hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 6655554431 1 14555667766532 36889999999999999887554
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.61 E-value=1.4 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+++.+|..+.+.|+|++|..+.+.++++-+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 35788999999999999999999999998543
No 366
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.33 E-value=2.9 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS-------LEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
+..+|...+..+++-.++-.|++|+.+..+...... ........+||..+..+|+.+-.++|++-|-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 567888889999999999999999998877642211 11123345667777777777777777666544
No 367
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=92.23 E-value=6.8 Score=36.65 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 011858 273 LASMAMIANGQDNEVAAIDVSIGNIYLSL--CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESK 350 (476)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 350 (476)
+.+-++-..+.-.....++.+||.+-... ..-..++.+|.+|+...+..+++.+ ..-|..+|..|.+.+++.+|+
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHH
Confidence 33344444555555666777777765432 3346789999999999999875433 556778899999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 011858 351 SYCENALRIYARPV 364 (476)
Q Consensus 351 ~~~~~a~~~~~~~~ 364 (476)
..+-++-.....-+
T Consensus 339 ~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 339 RSWAEAADVIRKYN 352 (618)
T ss_dssp HHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHcc
Confidence 99999988877654
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.14 E-value=6.4 Score=33.65 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
....++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++..+...+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e 219 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE 219 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence 34567888999999999999999999999988 8888899999999999999999999999998885443
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.06 E-value=2.4 Score=38.27 Aligned_cols=76 Identities=12% Similarity=0.006 Sum_probs=56.6
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHS 240 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 240 (476)
-++..|.+++...|+|..|++.++..---....+....+-...+++.+|.+|..+++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467778899999999999988765322111222233455667899999999999999999999999987665533
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.84 E-value=0.92 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 334 VRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
..+|..|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 371
>PRK10941 hypothetical protein; Provisional
Probab=91.72 E-value=0.91 Score=38.60 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
+.......+.++-.+|...++++.|+.+.+..+.+.++.+ .-+...|.+|.++|.+..|..-++..++.+++
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP-------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3445677888899999999999999999999999998876 55667899999999999999999998876543
No 372
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.62 E-value=1.5 Score=39.13 Aligned_cols=122 Identities=22% Similarity=0.115 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC--CChHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhcc
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPG--TTAEEIAGGLTEISAIYESVDEP---EEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~ 407 (476)
+...|.+......|++|+.++-.|-+.+....+. ..-..++..-..+.+||+.+.+. ..|..-+..+-+-+...+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 4444555556666666666665555544332100 00011233334466777776643 345554444444443333
Q ss_pred CCC---------------chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 408 GQQ---------------STIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 408 ~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
|.. ..+...+..-|.+.+.+|+-++|.++++.+...+.+..-.+..+
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~l 307 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETL 307 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHH
Confidence 321 12445556679999999999999999999999888876655444
No 373
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.39 E-value=3.4 Score=31.11 Aligned_cols=87 Identities=13% Similarity=-0.132 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
.....+..+...-...++.+++...+...--+.++.. ..-..-|.++...|+|.+|+..++...+-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~---------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~----- 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK---------ELDMFDGWLLIARGNYDEAARILRELLSS----- 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc---------ccchhHHHHHHHcCCHHHHHHHHHhhhcc-----
Confidence 3444566666666679999999999887766665432 33567789999999999999999887653
Q ss_pred cCCchhHHHHHHHHHHHHHHhccH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQF 222 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~ 222 (476)
.+......-.++.|+.-+|+.
T Consensus 74 ---~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 ---AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred ---CCCchHHHHHHHHHHHhcCCh
Confidence 233344455667777777764
No 374
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.25 E-value=5 Score=36.38 Aligned_cols=75 Identities=8% Similarity=0.074 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.++..|.+++.-+|||..|++.++.. ++.++........-...+++.+|-+|..+++|.+|++.|...+-...+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999887653 2211111123344567889999999999999999999999998776655
No 375
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=91.18 E-value=8.1 Score=32.38 Aligned_cols=181 Identities=17% Similarity=0.114 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH-H-hcCCCCchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH-HcCCC
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIH-R-AHSEPASLEESADRRLMALICE-AKGDYEAALEHLVLASMAMI-ANGQD 284 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~-~~~~~ 284 (476)
+..++.+....++|++.+.+..++++.. + ...... .+.++.+|- ..|....+...+.. ++.-. ..+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EE-------RnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEE-------RNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNE 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHH-------HHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCch
Confidence 4557788888999999999999987752 1 222111 334444443 34555666665554 22111 11111
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHHHHHc-----CC-----hhHHHH
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH---PSVASVFVRLADLYHRT-----GK-----LRESKS 351 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~ 351 (476)
.... +..-|. ..=-++=.......+.+.....-+.. ......+-..|..|.-. |+ .++|.+
T Consensus 76 ~~~~-----~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 76 DHVA-----SIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred HHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1111 111111 11123444566667776655433221 22233334445555432 22 458899
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Q 011858 352 YCENALRIYARPVPGTTAEEIAGGLTEISAIY-ESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~ 404 (476)
.|++|+++..... .+.+|.......+.+..| .-+++.++|....+++..-.-
T Consensus 150 aY~~A~e~a~~~L-~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 150 AYKSAQDIALAEL-PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999987644 344444444555555544 457999999988777766543
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.94 E-value=0.77 Score=26.25 Aligned_cols=25 Identities=8% Similarity=0.274 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALT 316 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~ 316 (476)
+.++..|...|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4677788888888888888887774
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.92 E-value=8 Score=33.07 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
.....++..++..+...|+++.++..+++.+...+... ..+..+-..|...|+...|+..|++.-.....-
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E---------~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ed 220 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE---------PAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch---------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Confidence 45667899999999999999999999999999876322 348888899999999999999999988865544
Q ss_pred hcCCc
Q 011858 198 LGETD 202 (476)
Q Consensus 198 ~~~~~ 202 (476)
+|-+.
T Consensus 221 lgi~P 225 (280)
T COG3629 221 LGIDP 225 (280)
T ss_pred cCCCc
Confidence 44443
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.87 E-value=12 Score=33.98 Aligned_cols=66 Identities=12% Similarity=-0.030 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
......+.-.+..++|..|...+...... ..+... .........|..++..-++.+|.+.++....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566777888999999999999998764 222111 1222233345666778899999999998655
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=15 Score=34.62 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=101.8
Q ss_pred cCChhHHHHHHHHhhhhccccCC----CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCC--------
Q 011858 134 LGKFEEAVPALEKAISVPDVTRG----ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGET-------- 201 (476)
Q Consensus 134 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 201 (476)
...|++|...|.-+....+...- ..+| ..+..+..++.++..+|+.+-|-...++++=.....+...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssP-YHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSP-YHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCC-cchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 45578888888888776542110 1111 2246789999999999999999999999987776643211
Q ss_pred --------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 202 --------DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 202 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
+.....+++..-..+...|-+..|.++++-.+.+.+....... .+.+-.......+|.=-++.++.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~------l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI------LYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 2223334555556667789999999999988887655332211 12222222233344433333332
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 011858 274 ASMAMIANGQDNEVAAIDVSIGNIYLSLCR---FDEAVFSYQKALTV 317 (476)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~ 317 (476)
. +........+.... -..++..|..... -+.|...+.+|+..
T Consensus 404 ~-e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 404 P-ENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred H-HhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 2 11111112222221 2345566666555 56778888888776
No 380
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=19 Score=35.63 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
..+....|..++..|++++|...|-+++..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 366788899999999999999999888865
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.35 E-value=1.8 Score=29.64 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 308 VFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 308 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...+.
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3455666665 7888899999999999999999999988887776443
No 382
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=90.33 E-value=1.1 Score=42.94 Aligned_cols=15 Identities=7% Similarity=0.397 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHHH
Q 011858 346 LRESKSYCENALRIY 360 (476)
Q Consensus 346 ~~~A~~~~~~a~~~~ 360 (476)
+..|...|+.....+
T Consensus 689 ~k~A~~af~~~~~y~ 703 (830)
T KOG1923|consen 689 FKDAAEAFEDVVEYF 703 (830)
T ss_pred HHHHHHHHHhHhHhh
Confidence 333444444444433
No 383
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.31 E-value=17 Score=34.48 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
....|......-...|+++...-.|++++--+.. .-..|...+......|+.+-|...+..+.++...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k---- 363 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIHVK---- 363 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC----
Confidence 4455666666777889999999999998765533 2334777788888889999998888887665422
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
....+...-+.+--..|+++.|...+++..+- -|....+-..-.....++|+.+.+.. +..........
T Consensus 364 -~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~- 432 (577)
T KOG1258|consen 364 -KTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEG- 432 (577)
T ss_pred -CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccc-
Confidence 22344555677778899999999999998776 35666666666677778898888875 22222222221
Q ss_pred CCCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhc
Q 011858 365 PGTTAEEIAGGLTEISAIYE-SVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..+.......+...++... -.++.+.|...+.+++++.+..
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 1122233444555555443 4678899999999988877665
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.14 E-value=6.1 Score=29.21 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 248 SADRRLMALICEAKGD---YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
..+.+++++++....+ ..+.+..++..++ ...+...-.+.+.++.-+.+.++|++++.+.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3446778888876554 4456666665433 2344455667788999999999999999999999887
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=90.02 E-value=6.2 Score=29.15 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHHHHc---CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 011858 262 GDYEAALEHLVLASMAMIAN---GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLAD 338 (476)
Q Consensus 262 g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 338 (476)
+.-..-...+++++..+... .+++....++...+... + .+.+.|...... +-....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----~--~~~~if~~l~~~------~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----S--DPREIFKFLYSK------GIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----S--HHHHHHHHHHHH------TTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----c--CHHHHHHHHHHc------CccHHHHHHHHHHHH
Confidence 44555567788887777533 34455555555544422 2 777777766554 224566888999999
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 011858 339 LYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 339 ~~~~~g~~~~A~~~~~~a~ 357 (476)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.70 E-value=0.96 Score=38.29 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 378 EISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
..+.-....|+.++|...|+.|+.+.+.++ .++..+|......++.-+|-.+|-+|+.+.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p-------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNP-------QILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCH-------HHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 334445678999999999999999999987 889999999999999999999999988754
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=14 Score=32.16 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=66.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLT 377 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 377 (476)
....++.++|++++++..+..+.. ........+...+|.++...|+..++.+.+...-....... .-.+.+-..++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~--~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~--~v~~~Vh~~fY 160 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEY--KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD--GVTSNVHSSFY 160 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc--CCChhhhhhHH
Confidence 345568999999999998887765 22235667778889999999999999999998888776652 23332333444
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHH
Q 011858 378 EI-SAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 378 ~l-a~~~~~~g~~~~A~~~~~~a~ 400 (476)
.+ +..|...|++.......-+.+
T Consensus 161 ~lssqYyk~~~d~a~yYr~~L~YL 184 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRHALLYL 184 (380)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44 455556777765544443333
No 388
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.13 E-value=25 Score=34.84 Aligned_cols=229 Identities=13% Similarity=-0.007 Sum_probs=127.9
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
++.....+..|-.++...|++++-...-.++.++++-.. .....|..--......++-.++...|++++.-....
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-----~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-----HLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 344455677777888888998877666666655554321 111111111111122367778888888886533322
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.............+..+...++++.-...|.+++...-.... ........+..+-..|...-..++-+.++...+..-
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~- 261 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP- 261 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-
Confidence 222333334444455556678888999999999876543321 122334555556666666555566777777766652
Q ss_pred CCCCCCChHHHHHHHHHHH--H-HHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEIS--A-IYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
.+......-+.... . ......+++.|...+.+.+................+..+-......|....-...++
T Consensus 262 -----~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~e 336 (881)
T KOG0128|consen 262 -----LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEE 336 (881)
T ss_pred -----chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 12222333333333 2 223456777777777776666655543333333455555666666777666666666
Q ss_pred HHHH
Q 011858 439 SAIA 442 (476)
Q Consensus 439 ~a~~ 442 (476)
+++.
T Consensus 337 R~~~ 340 (881)
T KOG0128|consen 337 RAVA 340 (881)
T ss_pred HHHH
Confidence 6654
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.13 E-value=13 Score=31.69 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=77.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHcCCChhHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYE-AALEHLVLASMAMIANGQDNEVAA 289 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~ 289 (476)
.=+..+.+.|++..|.+...-.++.+.+....... .....+..+....+.-+ +-.++.++++......+.......
T Consensus 15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~ 91 (260)
T PF04190_consen 15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHH
Confidence 33444455556666666665555555554433211 11234455555444332 344556666666644445567788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHhcCCCCCchHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHH
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALT--------VFKSSKGDNHPSVASVFVRLA-DLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
.+..+|..+.+.|++.+|..+|-.+-+ +.........+.....+...+ .-|...++...|...+....+.
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 899999999999999999988742211 111000011223333444333 4467789999999888777765
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.00 E-value=0.88 Score=36.81 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=52.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 296 NIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
......++.+.|.+.|.+++++ .|.....|+.+|....+.|+++.|...|++.+++...
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456788999999999999998 7888999999999999999999999999999998654
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.90 E-value=13 Score=31.44 Aligned_cols=140 Identities=20% Similarity=0.129 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhc--cCCChhHHHHHHHHH-HHHHhcCChhHHHHHHHHhhhhcccc
Q 011858 78 LLKLARDTIASGEGPSKALDYAIRASKSFERCAAAE--AEPSLDYAMSLHVLA-AIYCSLGKFEEAVPALEKAISVPDVT 154 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~ 154 (476)
+-..++.+...- +|..|++..+++++......... .+...+.--.+..+| .++..++++.+.+.+.-+-....++.
T Consensus 38 Le~Aad~LvV~r-dF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 38 LEEAADLLVVHR-DFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 334445555554 69999999999999874432200 011223333344444 45678899999999887776654432
Q ss_pred CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHhccHHHHHHHH
Q 011858 155 RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRV-GETCRYLAEAHVQAMQFDKAEELC 229 (476)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 229 (476)
. ..++-.-...|.+.++.....+.-..-+.--.. ..-+.. ..+-..+-.++.-+|.+++|+++.
T Consensus 117 P--------pkIleLCILLysKv~Ep~amlev~~~WL~~p~N---q~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 P--------PKILELCILLYSKVQEPAAMLEVASAWLQDPSN---QSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred C--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc---CCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 133455556778888888777665555442100 111111 112233444555689999998877
No 392
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.51 E-value=2.1 Score=36.40 Aligned_cols=71 Identities=24% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF 333 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 333 (476)
.+.-....|+.++|...|+.|+.+ .+....++..+|.+....++.-+|-.+|-+|+.+ +|....++
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nseAL 187 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSEAL 187 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchHHH
Confidence 344456779999999999998774 4566778899999999999999999999999988 66666666
Q ss_pred HHHHH
Q 011858 334 VRLAD 338 (476)
Q Consensus 334 ~~la~ 338 (476)
.+.+.
T Consensus 188 vnR~R 192 (472)
T KOG3824|consen 188 VNRAR 192 (472)
T ss_pred hhhhc
Confidence 55543
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.16 E-value=5.1 Score=26.17 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|..+-..|+ +++|+.+|+++++++.+...
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999995 99999999999999888866
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.13 E-value=6.8 Score=28.95 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 373 AGGLTEISAIYESVDE---PEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 373 ~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
....+++++++....+ ..+.+..++..++ . ..+...-...+.|+..+++.++|++++.+.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~---~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--S---AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--h---cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5677888888877654 4566777776665 1 222233467788999999999999999999888764
No 395
>PF12854 PPR_1: PPR repeat
Probab=88.03 E-value=1.3 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 329 VASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
...+|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356889999999999999999999876
No 396
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.96 E-value=2.5 Score=36.89 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=58.2
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELC 229 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (476)
.-+...|+-.+.++++++|...|..|..+...++|..+.....+++..|..++..+++....-..
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44788899999999999999999999999999999999999999999999999998887665443
No 397
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=87.62 E-value=7.4 Score=32.14 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=68.9
Q ss_pred HHhcCChhHHHHHHHHhhhhcccc---CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 011858 131 YCSLGKFEEAVPALEKAISVPDVT---RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGE 207 (476)
Q Consensus 131 ~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 207 (476)
.+..|+++.|+++.+-+++..... ...+.+...++-....+......|+.-+. .++.....+... ..-.+...+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~-~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTE-WDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhc-CCCChHHHHH
Confidence 457899999999999999875432 22233434344455566666666763322 123333333221 1222344566
Q ss_pred HHHHHHHHHH---------HhccHHHHHHHHHHHHHHHHhcCCC
Q 011858 208 TCRYLAEAHV---------QAMQFDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 208 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~ 242 (476)
.+-..|..+. ..++...|+.++++|+++.++.+..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK 214 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVK 214 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChH
Confidence 7777888773 4568889999999999998776654
No 398
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.48 E-value=1.7 Score=37.88 Aligned_cols=63 Identities=16% Similarity=0.059 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKS 351 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 351 (476)
.-+...|+-.+.++++++|...|..|..++...+|..+.....+++..|..++..++++..+-
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888999999999999999999999999999999999999999999998887766543
No 399
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.06 E-value=0.77 Score=37.12 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Q 011858 172 DTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHS 240 (476)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 240 (476)
......++.+.+.+.|.+++++ -|.....|+.+|....+.|+++.|.+.|++.+++.+...
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778999999999999998 567788999999999999999999999999999876543
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=28 Score=32.95 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=104.7
Q ss_pred hccHHHHHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----------
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSE----PASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ----------- 283 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------- 283 (476)
...|++|...|.-+......+.- ..++.....+..++.++..+|+.+-|....++++-.+...-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577888888888776654332 234566777899999999999999999999998876653210
Q ss_pred -------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHH-HHcCChhHHHHHHH
Q 011858 284 -------DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS-VASVFVRLADLY-HRTGKLRESKSYCE 354 (476)
Q Consensus 284 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~ 354 (476)
......+++..-..+...|-+..|.++.+-.+.+ ++. .+.+...+..+| .+..+|+=-+++++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--------dp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--------DPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1122223334445566788899999999888877 332 333333333333 44556665555555
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 011858 355 NALRIYARPVPGTTAEEIAGGLTEISAIYESVDE---PEEALKLLQRAMKLLE 404 (476)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 404 (476)
..-.. .+.. ..+. ...-..+|..|..... .+.|...+.+|+...+
T Consensus 403 ~~e~~-n~l~---~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 403 EPENM-NKLS---QLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhh-ccHh---hcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 44222 1110 0001 1122345666666555 5678888888887766
No 401
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.77 E-value=43 Score=34.88 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 418 ARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
...+.+.....+..+-+.-|.+=+...++
T Consensus 1068 e~~~~~~~~L~~~k~~f~~yk~RLl~vRe 1096 (1265)
T KOG1920|consen 1068 EAFGEVLEFLEDVKEQFVKYKKRLLVVRE 1096 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555533333333333333333
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.57 E-value=10 Score=32.33 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
.+...+..|...|.+.+|+++.++++.+.+-.. ..+..+-.++...|+--.++..|++.-+..+..+|-+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e---------~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE---------QDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh---------HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 355567788899999999999999998875322 33677788889999999999999888777666555443
Q ss_pred hh
Q 011858 203 PR 204 (476)
Q Consensus 203 ~~ 204 (476)
..
T Consensus 352 dd 353 (361)
T COG3947 352 DD 353 (361)
T ss_pred ch
Confidence 33
No 403
>PF12854 PPR_1: PPR repeat
Probab=86.45 E-value=2.1 Score=22.79 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
..+|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34577778888888888888887764
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.38 E-value=8.5 Score=26.37 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
+|....+.+.+|..+...|++++|++.+-.++...+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 677788999999999999999999999999888765
No 405
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.26 E-value=27 Score=32.00 Aligned_cols=122 Identities=18% Similarity=0.090 Sum_probs=71.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLAD-LYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLT 377 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 377 (476)
.+..-.+.|...|-++-+. + .....++..-|. -|...|++.-|...|+-.+..+... . ....
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~------~--~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~-----~----~y~~ 470 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKE------G--IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDS-----T----LYKE 470 (660)
T ss_pred HHHhhHHHHHHHHHHHhcc------C--CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCc-----h----HHHH
Confidence 3444456666666665543 1 111122222222 2457899999999999999876542 1 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 378 EISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
..-..+...++-+.|...|++++...... .+..+|..+-..-..-|+...+...-++...
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~-----q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKT-----QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHh-----hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 23344567899999999999988776654 2235555555555566666665554444433
No 406
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.25 E-value=44 Score=34.53 Aligned_cols=110 Identities=9% Similarity=-0.017 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchh
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPR 204 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 204 (476)
.....++.....|+.|+..|++...-++... .. .++.+.+|.....+-.-..--..|.+|+..+..+.+ .+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 550 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRK---EG---YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVG 550 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcc---cc---hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCC
Confidence 3455677778889999999999887765221 11 245778887776654444444677777777777632 344
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 242 (476)
..--|...|.+|.++|++++-++++.-+++.+++....
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 551 APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 44557788899999999999999999999998887654
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.17 E-value=7.6 Score=33.00 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
..+...+..|...|.+.+|+.+.++++.+ +|.....+..+..++...|+--.+...|++.-+...
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 34455677889999999999999999998 888888999999999999999999998888766544
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.80 E-value=28 Score=31.79 Aligned_cols=66 Identities=14% Similarity=-0.042 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
.....+..++..++|..|...++......+ +... .........|..++...++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLP---GREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---chhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445567777889999999999998877522 1111 11112333455566778888888888887664
No 409
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=85.29 E-value=21 Score=29.97 Aligned_cols=180 Identities=8% Similarity=-0.025 Sum_probs=97.2
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHV-QAMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..++.+....++|++.+.+.+++++.... ......-...++.+|- ..|....+...+...-+.....+...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~-----~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~-- 76 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDS-----EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNED-- 76 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchH--
Confidence 456888888999999999999988774210 0112222333444443 23555555555544211111111110
Q ss_pred HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHc-----CCChhHHHHHHHHHHHHHHc-----CC-----HHHHHH
Q 011858 246 EESADRRLMALICEAKGD-YEAALEHLVLASMAMIAN-----GQDNEVAAIDVSIGNIYLSL-----CR-----FDEAVF 309 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~~~~~-----g~-----~~~A~~ 309 (476)
...+..-|. ++ -++-.......+.++... .+.......+-..|..|... |+ .+.|..
T Consensus 77 -----~~~~~~~yr--~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 77 -----HVASIKEYR--GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred -----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 001111111 11 122233444444444321 11223344444455555432 22 458899
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHH
Q 011858 310 SYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRIY 360 (476)
Q Consensus 310 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 360 (476)
.|++|++++.....+.+|.......+.+..|.. +++.++|....+++++-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999998876667777777777777766655 689999988777776643
No 410
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.06 E-value=3.4 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQ--RAMKL 402 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~ 402 (476)
+.+..+|..+..+|++++|++.|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 356778999999999999999954 54443
No 411
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=29 Score=30.38 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=72.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011858 257 ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL 336 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 336 (476)
+....++.++|++++++.++.......+.....+...+|.++...|+..++.+.+...-+......+- .+.....++.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~l 162 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSL 162 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHH
Confidence 44566799999999999998888877777788888999999999999999999999988877665322 23244445555
Q ss_pred H-HHHHHcCChhHHHHHHHH
Q 011858 337 A-DLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 337 a-~~~~~~g~~~~A~~~~~~ 355 (476)
+ ..|...|++.......-+
T Consensus 163 ssqYyk~~~d~a~yYr~~L~ 182 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALL 182 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 5 445567777655443333
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.63 E-value=11 Score=35.77 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=38.3
Q ss_pred HHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 130 IYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 130 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
+..+.|+++.|.++..++-... -|..||.+....|++..|.+++.++..+
T Consensus 646 lal~lgrl~iA~~la~e~~s~~--------------Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANSEV--------------KWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcchH--------------HHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3456677777777666654332 2889999999999999999999988764
No 413
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.31 E-value=4.4 Score=21.96 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH--Hhhhh
Q 011858 122 MSLHVLAAIYCSLGKFEEAVPALE--KAISV 150 (476)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~--~al~~ 150 (476)
+.+..+|..+...|++++|+.+|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 357788999999999999999954 54443
No 414
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.07 E-value=17 Score=30.09 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=69.7
Q ss_pred HHHHcCChhHHHHHHHHHHHHHcCCCC---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHH
Q 011858 339 LYHRTGKLRESKSYCENALRIYARPVP---GTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAG 415 (476)
Q Consensus 339 ~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 415 (476)
-.+..|+++.|+++.+-+++....... ......+++-...-+......|+.-+. .++.....+.....-.....+.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHH
Confidence 346789999999999999987544310 011222334444455555566653222 1234444443333223344567
Q ss_pred HHHHHHHHHH---------HhhcHHHHHHHHHHHHHHHHHhcccC
Q 011858 416 IEARMGVMFY---------MVGRYEEARSSFESAIAKLRASGERK 451 (476)
Q Consensus 416 ~~~~l~~~~~---------~~g~~~~A~~~~~~a~~~~~~~~~~~ 451 (476)
.+...|..+. ..++...|+.++++|+++..+.|.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~ 215 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKK 215 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHH
Confidence 7777888774 45688999999999999988877653
No 415
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.56 E-value=7.2 Score=32.36 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHHHHHH
Q 011858 91 GPSKALDYAIRASKSFE 107 (476)
Q Consensus 91 ~~~~A~~~~~~al~~~~ 107 (476)
+..-|++.+.+||+++.
T Consensus 318 dVstavenL~KaL~lLt 334 (338)
T KOG0917|consen 318 DVSTAVENLQKALKLLT 334 (338)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35678888888888764
No 416
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.15 E-value=2.4 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
+|..+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999988765
No 417
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.51 E-value=11 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
+..+...|.-+-..|++++|+.+|+++++...+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4445556666778899999999999999876553
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.47 E-value=33 Score=29.27 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC--CCc---hHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD--NHP---SVASVFVRLA-DLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~---~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
.+-.-+..+.-..||..|++..+++++........ +.. ..-..+..+| +++.+++++.+.+.+.-+-.+.-+++
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 33445666677778889999999988876332111 111 1112222222 46778899988887766655543332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 364 VPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
++ .++..-..+|.+.+++....+.-..-+.. +.+.+....-..+-..+-.++.=+|.+++|.++..
T Consensus 117 -----Pp---kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 -----PP---KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred -----CH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 33 33444445678888888777766655543 22212222222333345556666788888887764
No 419
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=81.27 E-value=3.2 Score=21.03 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998754
No 420
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.17 E-value=11 Score=34.64 Aligned_cols=124 Identities=8% Similarity=-0.020 Sum_probs=76.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTE 378 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (476)
...|+.-.|-.-...++.. .+..+......+.+...+|+|+.+...+..+-.+.... ..+...
T Consensus 300 ~~~gd~~aas~~~~~~lr~--------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~---------~~~~~~ 362 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN--------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT---------DSTLRC 362 (831)
T ss_pred hhccCHHHHHHHHHHHHHh--------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC---------chHHHH
Confidence 3567777777666666655 33444455567888899999999998887776665331 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
+-.....+|++++|...-+..+.---+. .++...-+.....+|-++++..++++.+.+...
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~-------~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIED-------EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCC-------hhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 4455667888888877665544221111 133333344455667788888888887765443
No 421
>PF13041 PPR_2: PPR repeat family
Probab=81.05 E-value=8.8 Score=22.48 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
..+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 457888899999999999999999999875
No 422
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.73 E-value=1.7 Score=43.89 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCCC
Q 011858 1 MPGLVSVKTPPDAPP 15 (476)
Q Consensus 1 ~~~~~~~~~p~~~~~ 15 (476)
|.++...-+|||+||
T Consensus 1 ma~lppg~ppppppp 15 (2365)
T COG5178 1 MASLPPGNPPPPPPP 15 (2365)
T ss_pred CCCCCCCCCcccccC
Confidence 555644333333333
No 423
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.71 E-value=7.4 Score=36.07 Aligned_cols=86 Identities=12% Similarity=0.005 Sum_probs=50.0
Q ss_pred cCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHc---CChhhHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 011858 134 LGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSML---GQVDRSIGCYEEGLKIQIEALGETDPRVGETCR 210 (476)
Q Consensus 134 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 210 (476)
.+....|+..|.+++...+.. ...+.+.+.++++. |+.-.|+.-...++++ ++....+++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~---------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~ 449 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDA---------IYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHF 449 (758)
T ss_pred hHHHHHHHHHHHHHhhhccch---------hHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHH
Confidence 344556666666666554311 13355555555544 3334444444444444 566677788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIH 236 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~ 236 (476)
.|+.++..++++.+|+.+...+....
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~ 475 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSF 475 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcC
Confidence 88888888888888877766554433
No 424
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=79.56 E-value=41 Score=29.26 Aligned_cols=192 Identities=15% Similarity=0.054 Sum_probs=97.5
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.|+..+.++..|...+..| ||..|-.++-.-..+.. ..+++...++...-..-....+++.|.+-+.+..+.
T Consensus 125 ~~e~i~~lykyakfqyeCG-NY~gAs~yLY~~r~l~~-------~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECG-NYSGASDYLYFYRALVS-------DPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CHHHHHHHHHHHHHHHhcc-CcccHHHHHHHHHHhcC-------CcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677889999999999999 79999887654433321 234444445444433445567899999998888776
Q ss_pred ccccCCCchh-HHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh-ccHHHHHHH
Q 011858 151 PDVTRGADHA-LAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQA-MQFDKAEEL 228 (476)
Q Consensus 151 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 228 (476)
.....-.... ...-++|. +-+..+-.-++.++....-.+.-..+..+..-.......+..++.+..-. .+...+++-
T Consensus 197 IDs~~f~~~~~~l~qRtWL-iHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkd 275 (432)
T KOG2758|consen 197 IDSKSFSTSAQQLQQRTWL-IHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKD 275 (432)
T ss_pred HcccccccHHHHHHHHHHH-HHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHH
Confidence 5432222211 11111111 11122222233333332222211000000000112233455555544433 455666666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
+-+.++.-.-... .+ ....-.+.+-.-+++.|...++++-+..
T Consensus 276 lvkVIqqE~ysYk--DP-----iteFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 276 LVKVIQQESYSYK--DP-----ITEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HHHHHHHhccccC--Cc-----HHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 6666554322111 12 2233445566679999999998876544
No 425
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=79.15 E-value=4.8 Score=20.92 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
+|..+-..|.+.|++++|.+.|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466778889999999999999998765
No 426
>PF13041 PPR_2: PPR repeat family
Probab=79.03 E-value=11 Score=22.15 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
.+|+.+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 46777888899999999999999988764
No 427
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=78.74 E-value=16 Score=24.11 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|.++++.+.....
T Consensus 5 ~a~~l~~~Ave~D~~g-~y~eAl~~Y~~aie~l~~~lk 41 (77)
T cd02683 5 AAKEVLKRAVELDQEG-RFQEALVCYQEGIDLLMQVLK 41 (77)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888888998 599999999999999888765
No 428
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.70 E-value=15 Score=23.58 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
+..+...|...-..| ++++|+.+|.++++.+.....
T Consensus 5 A~~~~~~Av~~D~~g-~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 5 AIELIKKAVEADEAG-NYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 556778888899999 599999999999999877755
No 429
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=78.17 E-value=13 Score=36.12 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 386 VDEPEEALKLLQRAMKLLEDKPG--QQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 386 ~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
..++..|...|+.....+.+.+. ........+...-.+|.....-.++..-+++|++
T Consensus 686 ~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~A~q 744 (830)
T KOG1923|consen 686 RKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEAALQ 744 (830)
T ss_pred HHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Confidence 34455566666666666554432 2222233333444444444433344444444444
No 430
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=77.67 E-value=66 Score=30.59 Aligned_cols=79 Identities=13% Similarity=-0.004 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 205 VGETCRYLAEAHVQ--AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 205 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
...++.+||.+-.. ...-..++.+|.+++...+...+..| ..-|..+|..+++.+++.+|+..+-++-..++..+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455555554432 22345678899999998888776533 23377789999999999999999988877666554
Q ss_pred CChh
Q 011858 283 QDNE 286 (476)
Q Consensus 283 ~~~~ 286 (476)
...+
T Consensus 353 Y~re 356 (618)
T PF05053_consen 353 YSRE 356 (618)
T ss_dssp --GG
T ss_pred cCcc
Confidence 4333
No 431
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.66 E-value=6.2 Score=20.49 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
+|..+-..|.+.|++++|.+.|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466777889999999999999998754
No 432
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.16 E-value=79 Score=31.23 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
...-.+....|.-....|++++|+.+|.-+-+.
T Consensus 411 ~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~ 443 (613)
T PF04097_consen 411 DFLREIIEQAAREAEERGRFEDAILLYHLAEEY 443 (613)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH
Confidence 344556666777778888888888887766443
No 433
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.00 E-value=28 Score=30.05 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (476)
|+.+|.+|..+.+..+.+ ++.+|.++...|+.-.|+-+|-+++.. ..|. ..+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p--------~nQLAvl~~~~~~~l~avy~y~Rsl~~-----~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP--------YNQLAVLASYQGDDLDAVYYYIRSLAV-----RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH--------HHHHHHHHHHTT-HHHHHHHHHHHHSS-----SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc--------ccchhhhhccccchHHHHHHHHHHHhc-----CCCc-HHHHHHHHHHHHH
Confidence 688999999999887765 999999999999999999999887531 2222 5556667666666
No 434
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.74 E-value=9.7 Score=34.85 Aligned_cols=124 Identities=20% Similarity=0.153 Sum_probs=71.2
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 011858 259 EAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLAD 338 (476)
Q Consensus 259 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 338 (476)
+..|+.-.|-.-+..++. ..+..|. .....+.+...+|+|+.+...+..+-.+.- ....+...+-.
T Consensus 300 ~~~gd~~aas~~~~~~lr---~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--------s~~~~~~~~~r 365 (831)
T PRK15180 300 LADGDIIAASQQLFAALR---NQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKIIG--------TTDSTLRCRLR 365 (831)
T ss_pred hhccCHHHHHHHHHHHHH---hCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhhhc--------CCchHHHHHHH
Confidence 345666666555554433 2233333 234467788889999998888776655521 12234444556
Q ss_pred HHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 339 LYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 339 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
....+|++++|....+-.+.- ....++ +...-+.....+|-++++..++++.+.+.+.
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~------eie~~e---i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSN------EIEDEE---VLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hhhchhhHHHHHHHHHHHhcc------ccCChh---heeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 667788888887766655432 111222 2222233334566778888888887776554
No 435
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=12 Score=35.44 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 256 LICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
.+..+.|+++.|.+...++ + ...-|-.||.+....+++..|.+++.++.+.
T Consensus 645 elal~lgrl~iA~~la~e~--------~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--------N---SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--------c---chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3456778888888777665 1 1334677999999999999999999998665
No 436
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=75.40 E-value=8.6 Score=19.91 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
.+|..+...+.+.|+++.|...++...+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3577888899999999999999988765
No 437
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.02 E-value=21 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHH
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERC 109 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~ 109 (476)
.+..+...|...-..| ++++|+.+|..+++.+...
T Consensus 5 ~Ai~~a~~Ave~D~~g-~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 5 DAVQFARLAVQRDQEG-RYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999 5999999999999998764
No 438
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=73.79 E-value=23 Score=23.48 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 376 LTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
+...|..+-..|+.++|+.+|++++....+-.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 33444445566899999999999999887754
No 439
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.66 E-value=7.2 Score=33.70 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 307 AVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 307 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
|+.+|.+|..+ .|.....++.||.++...|+.-.|+-+|-+++-
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 67899999999 788899999999999999999999888888773
No 440
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.44 E-value=30 Score=32.37 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 303 RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLR---ESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 303 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
....|+..|.+++.. .+.....+.+.+.++.+.+-.. .|+.-...++++ .+....+++.|
T Consensus 389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---------n~s~~kah~~l 451 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---------ChHHHHHHHHH
Confidence 445667777777766 5666777777787777654333 344444444443 33457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 380 SAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
+.++...+++.+|+.+...+....+
T Consensus 452 a~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 8988889998888888776655544
No 441
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.23 E-value=1e+02 Score=30.55 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC-------hhHHHHHHHHH
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK-------LRESKSYCENA 356 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a 356 (476)
....-.+....|.-....|++++|+.+|.-+-+. +......-..|+.+...... -+.-...-...
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~--------d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i 481 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLAEEY--------DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEI 481 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H--------HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHH
Confidence 3444555556666666777777777766655433 11112222334444433332 12222333333
Q ss_pred HHHHcCCC-----CCCChHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 011858 357 LRIYARPV-----PGTTAEEIAGGLTEISAI--YESVDEPEEALKLLQRA 399 (476)
Q Consensus 357 ~~~~~~~~-----~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a 399 (476)
.+.+.... ...........+..+..+ +...|++++|++.+++.
T Consensus 482 ~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 482 LERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 33332210 001111223334444443 45689999999988753
No 442
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.94 E-value=64 Score=30.82 Aligned_cols=109 Identities=16% Similarity=0.036 Sum_probs=57.7
Q ss_pred CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVL-ASMAM 278 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~ 278 (476)
+.++......+ +...+...+....+...+..++...+. .+.+..+++......|....+...+.. +....
T Consensus 62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPE--------NCPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcc--------cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 33455444444 666666677776666666666554322 233356666666666655555544443 22211
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
............++.++......|+..++.....++.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~ 171 (620)
T COG3914 133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL 171 (620)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111111111112223677777778888887777777776
No 443
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.74 E-value=1.2e+02 Score=31.17 Aligned_cols=189 Identities=15% Similarity=0.055 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCCh--hhHHHHHHHHHHHHHH----
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQV--DRSIGCYEEGLKIQIE---- 196 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~---- 196 (476)
-+..|+..|...|++++|++++.+...-.... +... ...+-.+-..+...+.- +-..++-.-.++..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~--d~~~---~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDT--DSFQ---LDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccc--ccch---hhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 37788999999999999999999987754200 0100 01122233333333332 2222222222211000
Q ss_pred HhcCCchhHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HHHHhCCHHHHHHH--HH
Q 011858 197 ALGETDPRVGET-CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL-ICEAKGDYEAALEH--LV 272 (476)
Q Consensus 197 ~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~--~~ 272 (476)
++..++...... -...-.-|......+-++.|++.++.........-+...+..|..... .-...++-+++.+. .+
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~re 660 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVRE 660 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHH
Confidence 001111111111 111222345666778888999988876655443322222222221111 11112233455555 33
Q ss_pred HHHHHHHHcCC--------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 273 LASMAMIANGQ--------DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALT 316 (476)
Q Consensus 273 ~a~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 316 (476)
+.......... .......|...+.++.+.|+.++|+..|-..+.
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33332222111 111245667788888899999999988876654
No 444
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.50 E-value=93 Score=29.83 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH-HHHHHcC
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN-ALRIYAR 362 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~~~ 362 (476)
++....... +...+...++...+.-.+..++.. ++..+.+..+|+......|....+...+.. +......
T Consensus 64 ~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~ 134 (620)
T COG3914 64 NPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPD 134 (620)
T ss_pred CHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 344433444 677777888888888777777776 777888899999888777776666555544 4444322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
. . ........++.++.....+|+..++...++++..+.+...
T Consensus 135 ~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 135 N--A-EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred h--H-HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 1 0 0111122233378888899999999999999998887764
No 445
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=72.37 E-value=17 Score=30.47 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 262 GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320 (476)
Q Consensus 262 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 320 (476)
-..+.|.+++..|+..++..++...+..+....+..|+...+|+.|..+|..|+.++..
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 35678899999999999988888888888888899999999999999999999998653
No 446
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=72.23 E-value=68 Score=28.13 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhH
Q 011858 91 GPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQL 170 (476)
Q Consensus 91 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 170 (476)
+..+-+.....|+++ +++-+.++..++.--. --..+|..+++++++..+. .++.
T Consensus 199 np~~RI~~A~~ALeI-----------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~-------------~yr~ 252 (556)
T KOG3807|consen 199 NPPARIKAAYQALEI-----------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET-------------IYRQ 252 (556)
T ss_pred CcHHHHHHHHHHHhc-----------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH-------------HHhh
Confidence 588888888888886 4666667777765432 2357788888888876531 2222
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 171 GDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 171 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
.......|...+|.. ..|......+-..++.+..++|+..+|++.++...+
T Consensus 253 sqq~qh~~~~~da~~-------------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQL-------------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHhhhccchhhhh-------------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 222222332222211 012333445566778888888888888887776654
No 447
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.57 E-value=75 Score=28.36 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=70.8
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHhcCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL-EIHRAHSEP 242 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 242 (476)
+.....++......+.....+....+++...... ......++..+-.+....++|.-+..+++.-+ ++.......
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~ 177 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL 177 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC
Confidence 3456677777778888888888888888876543 22445566666677777888877776665433 333332222
Q ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 243 ASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 243 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
+.......++.-|.++...++++.|+.+|+.++-
T Consensus 178 ~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 178 DPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred CHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 2122233344456778889999999999987754
No 448
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.57 E-value=72 Score=28.16 Aligned_cols=202 Identities=10% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHH
Q 011858 95 ALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTC 174 (476)
Q Consensus 95 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (476)
+-..|+++.+..++. ......-..-|.+++..++|.+....+..+-.......+..........+..--.+-
T Consensus 40 ~~~~y~Q~~q~~kk~--------~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vN 111 (449)
T COG3014 40 PKKAYEQSKQFTKKK--------KNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIN 111 (449)
T ss_pred chhHHHHHHHhhhhh--------hHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhc
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 011858 175 SMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLM 254 (476)
Q Consensus 175 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 254 (476)
-...+|+-+ .-+...+...+|.-|....+++.|.-.+.++....
T Consensus 112 DNi~~Y~g~------------------~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ------------------ 155 (449)
T COG3014 112 DNVRAYGGN------------------IYEGVLINYYKALNYMLLNDSAKARVEFNRANERQ------------------ 155 (449)
T ss_pred cchhhcCch------------------hHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHH------------------
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH----HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 255 ALICEAKGDYEAALEHLVLASMAMI----ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 255 a~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
+.|.+++.+.++..+ ..+.++.....+.. ..-.-...|..=...|+. .+....+
T Consensus 156 ----------~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae--~s~~i~n~Y~ny~~~yea----------~~~l~np 213 (449)
T COG3014 156 ----------RRAKEFYYEEVQKAIKEIDSSKHNINMERSRAE--VSEILNNTYSNYLDKYEA----------YQGLLNP 213 (449)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH--HHHHHHHHHHHHHHHHHh----------hcccchH
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+-+.-+..+.-.|++.++..++.++.-+.++
T Consensus 214 Yv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 214 YVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHHHHHHhcccCccHhHHHHHHHHHhccCch
No 449
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=71.50 E-value=13 Score=24.67 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 419 RMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
..|..+...|+.++|+.+|++++..+.+...
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 4444555668889999999999988776533
No 450
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=71.44 E-value=26 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.096 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|.++++.+-....
T Consensus 5 ~A~~l~~~Av~~D~~g-~y~eA~~~Y~~aie~l~~~~k 41 (75)
T cd02678 5 KAIELVKKAIEEDNAG-NYEEALRLYQHALEYFMHALK 41 (75)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHh
Confidence 3566778888888898 599999999999999877654
No 451
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=70.85 E-value=47 Score=25.69 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccC----------------------------CChhHHHHHHHHHH
Q 011858 78 LLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAE----------------------------PSLDYAMSLHVLAA 129 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~~ 129 (476)
....+...+..| +.++|+..+.+|...+.......+. ............++
T Consensus 5 ~i~~Ar~aL~~g-~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 5 DIQKARLALFQG-DTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 456788888898 5999999999998887543221000 02334456778888
Q ss_pred HHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHH
Q 011858 130 IYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLK 192 (476)
Q Consensus 130 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 192 (476)
-....|+...|.+.++.+-.-..... ..-|......-...+..+...|++.+|...+..+++
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~-~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITT-ALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEE-EEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeee-eeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999999999987754322111 112223334467888899999999999999988875
No 452
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=70.75 E-value=13 Score=33.90 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHhc-CChhHHHHHHHHhhhhccccC---CCchhHHHHHhHhhHHHHHHHcCChhhHH--------HH
Q 011858 119 DYAMSLHVLAAIYCSL-GKFEEAVPALEKAISVPDVTR---GADHALAKFSGYMQLGDTCSMLGQVDRSI--------GC 186 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--------~~ 186 (476)
...+++-.+|..|... .+.-.|..++.++++...... ....+. --.++.-|...-+..+-+ .+
T Consensus 243 ~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-----~p~~ay~~~re~~~~~elE~lv~D~d~~ 317 (615)
T KOG0508|consen 243 SRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-----EPVLAYGYGREVNNREELEELVEDPDEM 317 (615)
T ss_pred hHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-----CchhhhhhhhhcCCHHHHHHHhcChHHH
Confidence 3455666677666533 356678888888887653200 000000 011111121111111111 12
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 011858 187 YEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA 260 (476)
Q Consensus 187 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 260 (476)
--+++-+.++++|..+++........|-+|...|+++..++.+.-|+.+.+++..+-.+..+..+...+.++..
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 23456667778888888887777788999999999999999999999999998888777777777777776653
No 453
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=70.68 E-value=90 Score=28.91 Aligned_cols=147 Identities=8% Similarity=-0.130 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 155 (476)
-.+...|..+..++ ++.+|...|.+..+-.+.. ...-.-+++.+.-...+-+.+.+.-...+-..-+. .
T Consensus 7 ~llc~Qgf~Lqkq~-~~~esEkifskI~~e~~~~------~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~----~ 75 (549)
T PF07079_consen 7 YLLCFQGFILQKQK-KFQESEKIFSKIYDEKESS------PFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ----F 75 (549)
T ss_pred HHHHHhhHHHHHHh-hhhHHHHHHHHHHHHhhcc------hHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh----c
Confidence 34567788888887 5999998888776643322 11111123333322233344444433333332222 2
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc----CCchh-H--HHHHHHHHHHHHHhccHHHHHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG----ETDPR-V--GETCRYLAEAHVQAMQFDKAEEL 228 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~ 228 (476)
+. .+ ......|...++.++|.+|++.+..-.+....... .+-.. . ...-...+.++...|++.++...
T Consensus 76 ~~-s~----~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 76 GK-SA----YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred CC-ch----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 21 11 33567788899999999999877665443222100 00000 0 11223467888999999999999
Q ss_pred HHHHHHHHHh
Q 011858 229 CKKTLEIHRA 238 (476)
Q Consensus 229 ~~~al~~~~~ 238 (476)
+++.+...-.
T Consensus 151 Ln~i~~~llk 160 (549)
T PF07079_consen 151 LNRIIERLLK 160 (549)
T ss_pred HHHHHHHHhh
Confidence 9998876543
No 454
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=68.81 E-value=70 Score=27.28 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
........++=..+...++++.|..+.++.+.+ .|....-+...|.+|.++|.+.-|++.++..++.+++
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 345666677778899999999999999999998 6777777888999999999999999999998887654
No 455
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.78 E-value=16 Score=23.97 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 414 AGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
+..+..-|.---..|+|++|+.+|..+++.+
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
No 456
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.22 E-value=77 Score=27.17 Aligned_cols=134 Identities=16% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHH
Q 011858 86 IASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFS 165 (476)
Q Consensus 86 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 165 (476)
...|+ +=+|...++..+-..-+... +....+..+.-+.++++.++..-|..+.-..++..++....++...
T Consensus 17 ~~~~d-~Yeahqm~RTl~fR~~~~K~-----~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~--- 87 (312)
T KOG3024|consen 17 IELGD-YYEAHQMYRTLVFRYTRQKA-----HEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLK--- 87 (312)
T ss_pred ccccc-HHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHH---
Q ss_pred hHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q 011858 166 GYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELC 229 (476)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (476)
.-+++.+....+.-+.....+-+..-.+....+...-.....+..+|..++..+++.+|..+|
T Consensus 88 -~anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HF 150 (312)
T KOG3024|consen 88 -VANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHF 150 (312)
T ss_pred -HHHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHh
No 457
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.89 E-value=25 Score=31.13 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCCh
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA 369 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 369 (476)
....++......+.....+....+++...... ......++..+-.+..+.++|.-+..+++.-+.-.....+..+.
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~ 179 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDP 179 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCH
Confidence 34556666667777777778888888776544 22445566666777778888877766665433222221223344
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 370 EEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
......++.-|.++...++++.|+.+|+.++.
T Consensus 180 k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 180 KYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 44555566678888999999999999987764
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.78 E-value=1e+02 Score=30.56 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=93.5
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHH---HcCChhhHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCS---MLGQVDRSIGCYEEGLK 192 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~ 192 (476)
.+...+++-.++-..|....+|+.-+++.+..-.+-....-.++.. +.+..+-++. .-|+-++|+...-.+++
T Consensus 196 p~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~n----v~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 196 PDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHN----VRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred ccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCc----eEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 3444556677777888888999988888777655532111111111 1223333333 34667777776666655
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHH---------HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC
Q 011858 193 IQIEALGETDPRVGETCRYLAEAHV---------QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263 (476)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 263 (476)
. +.+...+.+...|.+|. ..+..+.|+++|+++.+..+....- .+++.++...|+
T Consensus 272 ~-------eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG---------IN~atLL~aaG~ 335 (1226)
T KOG4279|consen 272 K-------EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG---------INLATLLRAAGE 335 (1226)
T ss_pred h-------cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc---------ccHHHHHHHhhh
Confidence 3 12333344555555554 3466788999999998876553322 344555555553
Q ss_pred -HHHHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHH
Q 011858 264 -YEAALEHLVLASMAMIANGQD--NEVAAIDVSIGNI---YLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 264 -~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~ 317 (476)
|+...+.-.-+..+-...+.. -.....|...|.. -...+++.+|+...+...++
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 333333333222222211111 1111122222222 22346777777766666555
No 459
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.62 E-value=33 Score=22.67 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=25.7
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
+...|.-.-..|++++|+.+|.++++.+...+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45566667788999999999999999877643
No 460
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=67.51 E-value=99 Score=28.17 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHcCCC----C----CCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcc
Q 011858 347 RESKSYCENALRIYARPV----P----GTTAEEIAGGLTEISAIYESV---------DEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 347 ~~A~~~~~~a~~~~~~~~----~----~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~ 407 (476)
..|+.+|+..++.+.... + .+.......+++.+|++|.+. ++...++.+|+.+++....++
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~ 343 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHP 343 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 467888888888776421 0 112233567888899988775 345566666666666666553
No 461
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.37 E-value=32 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|.++++.+-....
T Consensus 5 ~Ai~lv~~Av~~D~~g-~y~eA~~lY~~ale~~~~~~k 41 (75)
T cd02684 5 KAIALVVQAVKKDQRG-DAAAALSLYCSALQYFVPALH 41 (75)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888888888 599999999999999887654
No 462
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=66.80 E-value=89 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
..-+..|..-...|+ |..|++.+-.|+++.+...-
T Consensus 374 SSAIsrAvsdASaGD-y~~AiETllTAI~lIKqSrv 408 (498)
T KOG4849|consen 374 SSAISRAVSDASAGD-YKGAIETLLTAIQLIKQSRV 408 (498)
T ss_pred HHHHHHHhccccccc-chhHHHHHHHHHHHHHhhcc
Confidence 334445555566784 99999999999998877643
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.64 E-value=1.8e+02 Score=30.79 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhcccc------------------CC--CchhHHHHHhHhhHHHHHHHcCCh
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVT------------------RG--ADHALAKFSGYMQLGDTCSMLGQV 180 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~--~~~~~~~~~~~~~l~~~~~~~g~~ 180 (476)
...-+.+|.+|...|+..+|+.+|.+|..-..+. .| ...+......|...-+++..-+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 3346678889999999999999999987644210 00 001111122233333344444444
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 011858 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA 260 (476)
Q Consensus 181 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 260 (476)
+.+++...+|++. .+.++|..+..+..+-.-+..+|.+.+|...+-+ +.+ ....-.++..+-.+++.
T Consensus 1000 E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npd--serrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPD--SERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCc--HHHHHHHHHHHHHHHHh
Confidence 4444444444443 3455677777777777777778887777654432 222 12334456677777777
Q ss_pred hCCHHH
Q 011858 261 KGDYEA 266 (476)
Q Consensus 261 ~g~~~~ 266 (476)
.|+++.
T Consensus 1067 cg~l~~ 1072 (1480)
T KOG4521|consen 1067 CGELEA 1072 (1480)
T ss_pred ccchHH
Confidence 776653
No 464
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.44 E-value=1.9e+02 Score=30.66 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKAL 315 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al 315 (476)
..|+.-+..++++-+|-+...+.+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 445555666666666655555544
No 465
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.33 E-value=1.6e+02 Score=29.89 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred hhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHH
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEE 247 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 247 (476)
..+-.+|...|+|++|+++.+..-+..+.. +...|..++..++|..|.++|-+..+-++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~V-----------l~~qAdf~f~~k~y~~AA~~yA~t~~~FEE--------- 421 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETV-----------LLKQADFLFQDKEYLRAAEIYAETLSSFEE--------- 421 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHhhhhHHH---------
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
.+.-+....+.+.-..++.+-++...........+.+...+-..+.+.++.+ .--+.+++..... ..
T Consensus 422 ------VaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~---~~de~~~en~~~~----~~ 488 (911)
T KOG2034|consen 422 ------VALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLD---STDEEALENWRLE----YD 488 (911)
T ss_pred ------HHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhccc---ccChhHHHHHHHH----HH
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQR 398 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (476)
....-....-..+...-+.+...+.+..--+...-. .-.....-+..+-..+..+++|++|++.+..
T Consensus 489 ~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll----~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 489 EVQREFSKFLVLHKDELNRETVYQLLASHGRQEELL----QFANLIKDYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 466
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.85 E-value=37 Score=22.26 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|.++++.+.....
T Consensus 7 ~A~~li~~Av~~d~~g-~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 7 KAKELISKALKADEAG-DYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 4556777888888888 599999999999999887654
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.77 E-value=38 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 320 (476)
+...|.-+-..|+|++|+.+|.++++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 334455566778888888888888887654
No 468
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=64.49 E-value=37 Score=22.15 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
+..+...|...-..| ++++|+.+|..|++.+.....
T Consensus 6 a~~l~~~Av~~D~~g-~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 6 AKELIKQAVKEDEDG-NYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 455677777788888 599999999999999887754
No 469
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.60 E-value=1.8e+02 Score=29.91 Aligned_cols=187 Identities=13% Similarity=-0.008 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHh----cCCC
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRF--DEAVFSYQKALTVFKS----SKGD 324 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~----~~~~ 324 (476)
+..|+.+|...|++++|++.+.+...-.. ..+......+-.+-..+...+.- +-..++-.-.++.... ++-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~--~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS--DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc--ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 77899999999999999999987644221 11222222333333344444433 3333333333221100 0000
Q ss_pred CCchHHHHH-HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH---HHcCCHHHHHHH--HHH
Q 011858 325 NHPSVASVF-VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIY---ESVDEPEEALKL--LQR 398 (476)
Q Consensus 325 ~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~--~~~ 398 (476)
++....... -....-|......+-++.|++.++...+... ..-+......| +..+. ...++-+++.+. .++
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~-~~lht~ll~ly--~e~v~~~~~~~~kg~e~~E~~~rek 661 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTS-TLLHTVLLKLY--LEKVLEQASTDGKGEEAPETTVREK 661 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccc-hHHHHHHHHHH--HHHHhhccCchhccccchhhhHHHH
Confidence 011011111 1112224566778888999999988765421 00111111111 12222 112233455555 444
Q ss_pred HHHHHHhccCC-------CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 399 AMKLLEDKPGQ-------QSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 399 a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.....+..... .......|...+.++.++|+.++|+..|-.-+.
T Consensus 662 l~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 662 LLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 44433333111 112245677788888899999999988876665
No 470
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=62.74 E-value=20 Score=30.06 Aligned_cols=61 Identities=30% Similarity=0.345 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 386 VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 386 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.-....|.+++..|+-..... ++...+..+.+..+..|+...+|+-|..||..|..++...
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r-~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 52 DATMENAKELLDKALMTAEGR-GDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred ccChhhHHHHHHHHHHhhhcc-CCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 345678999999999888877 7777777777888999999999999999999999886543
No 471
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.25 E-value=42 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..++..|...-..| ++++|+.+|..+++.+.....
T Consensus 5 ~A~~l~~~Ave~d~~~-~y~eA~~~Y~~~i~~~~~~~k 41 (75)
T cd02677 5 QAAELIRLALEKEEEG-DYEAAFEFYRAGVDLLLKGVQ 41 (75)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhc
Confidence 4566778888888888 599999999999999887654
No 472
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.07 E-value=1.1e+02 Score=26.88 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=34.8
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 172 DTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
.......+..+-+.....++++ ++..+.+|..++.-- .--..+|.+.++++++..+.
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~ 248 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET 248 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH
Confidence 3334445556666666777776 566667776666532 23456777778877765543
No 473
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=61.23 E-value=75 Score=24.58 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-----------------------------CC--CchHHHHHHHHHHHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG-----------------------------DN--HPSVASVFVRLADLY 340 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~--~~~~~~~~~~la~~~ 340 (476)
...+......|+.++|...+.++...+..... ++ ...........+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 44566667777888888777777665542110 00 112344556677788
Q ss_pred HHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 341 HRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 341 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
.+.|+...|.+.++.+-.-..-.. ..-+-.........+..+...|++.+|...+..+++
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~-~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITT-ALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEE-EEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeee-eeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999888776533111000 011223345566778889999999999999998875
No 474
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=61.21 E-value=85 Score=25.21 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHH
Q 011858 188 EEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAA 267 (476)
Q Consensus 188 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 267 (476)
++++.+.+++ .-+...+......|++++|...++++.+........ .....-.+.-|.+-..+..|-+|
T Consensus 20 EE~l~lsRei---------~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~--l~~~pel~~ag~~~~a~QEyvEA 88 (204)
T COG2178 20 EEALKLSREI---------VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRL--LAGFPELYFAGFVTTALQEYVEA 88 (204)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHhhcchHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 268 LEHLVLASMAMIANGQDNEVAAIDVSIGNI------------YLSLCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
.-++.-...-.....+.-......+.+|.+ ....|++++|..+++-.-+++.....-+.|.
T Consensus 89 ~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP~ 161 (204)
T COG2178 89 TLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYPK 161 (204)
T ss_pred HHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCch
No 475
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.99 E-value=44 Score=21.88 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=21.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 335 RLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 335 ~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
..|.-+-..|++++|+.+|.++++.+..
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455689999999999999987654
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.64 E-value=41 Score=21.45 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
+...|.-+-..|++++|+.+|.+++..+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44556667778999999999999987654
No 477
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=60.56 E-value=31 Score=22.65 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=20.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 421 GVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
|.-.-..|+|++|..+|..+++.+...
T Consensus 13 Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 13 ALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444589999999999999987664
No 478
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.38 E-value=8.1 Score=39.45 Aligned_cols=7 Identities=43% Similarity=0.548 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 011858 95 ALDYAIR 101 (476)
Q Consensus 95 A~~~~~~ 101 (476)
|+.++-.
T Consensus 114 alkylPh 120 (2365)
T COG5178 114 ALKYLPH 120 (2365)
T ss_pred hhhhchH
Confidence 4444433
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=59.60 E-value=1.4e+02 Score=27.35 Aligned_cols=215 Identities=13% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
.+.......-+..|...+..|+ ..++...+...... ...+...-.+....-..+...+..+|+.+|+.+.
T Consensus 106 ~d~~~~~d~~L~~g~laY~~Gr-~~~a~~~La~i~~~---------~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 106 RDKLGNFDQRLADGALAYLSGR-GREARKLLAGVAPE---------YLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCCChhhHHHHHHHHHHHcCC-HHHHHHHhhcCChh---------hcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHH
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEEL 228 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 228 (476)
-+.+-..-++-. +..--.+....|+.++...+-.+-+..+.. ++................+ ...-
T Consensus 176 LlaPGTLvEEAA------LRRsi~la~~~g~~~rf~~la~~Y~rRF~~-----S~YA~~F~~~F~~~~~~~~----d~~~ 240 (421)
T PRK12798 176 LLAPGTLVEEAA------LRRSLFIAAQLGDADKFEALARNYLRRFRH-----SPYASQFAQRFVDLVVRLD----DEIR 240 (421)
T ss_pred HhCCchHHHHHH------HHHhhHHHHhcCcHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHhcc----cccc
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAV 308 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 308 (476)
+.+...+....... ....+|..++..-...|+.+-|.-.-++++.+. .........+....+..-.-..++++++
T Consensus 241 ~~~l~~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~--~~~~~~~~ra~LY~aaa~v~s~~~~~al 315 (421)
T PRK12798 241 DARLVEILSFMDPE---RQRELYLRIARAALIDGKTELARFASERALKLA--DPDSADAARARLYRGAALVASDDAESAL 315 (421)
T ss_pred HHHHHHHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc--cCCCcchHHHHHHHHHHccCcccHHHHH
Q ss_pred HHHHH
Q 011858 309 FSYQK 313 (476)
Q Consensus 309 ~~~~~ 313 (476)
+.+..
T Consensus 316 ~~L~~ 320 (421)
T PRK12798 316 EELSQ 320 (421)
T ss_pred HHHhc
No 480
>PRK09169 hypothetical protein; Validated
Probab=58.47 E-value=3.5e+02 Score=31.42 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 419 RMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
.++..+..+.++-+.-.+-+-++.+....+....++
T Consensus 752 ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~ 787 (2316)
T PRK09169 752 GLANSLNALSKWPQEPACQQAALLLAERLGSAGLPF 787 (2316)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCch
Confidence 455555555566666666677777777776554444
No 481
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.16 E-value=18 Score=31.80 Aligned_cols=101 Identities=16% Similarity=0.037 Sum_probs=73.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-------------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 253 LMALICEAKGDYEAALEHLVLASMAMIANG-------------QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFK 319 (476)
Q Consensus 253 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 319 (476)
..+.-.+..++++.|..-+.+++....... .......+..+++.+-...+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 346667788888888888888776554111 11122345566777888888888887776666653
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.+.....++..+..+....++++|++.++.+....+
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 667788899999999999999999999999877643
No 482
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.90 E-value=1.4e+02 Score=26.49 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
-..|......+...++|++-..+... ++. ...|.-...++...|+..+|..+..++-.
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~s-----kKs---------PIGyepFv~~~~~~~~~~eA~~yI~k~~~-------- 265 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAKS-----KKS---------PIGYEPFVEACLKYGNKKEASKYIPKIPD-------- 265 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC-----CCC---------CCChHHHHHHHHHCCCHHHHHHHHHhCCh--------
Confidence 45566667778888888766554321 221 12344455667778888888888877111
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
......|.+.|++.+|.+..-
T Consensus 266 --------~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 266 --------EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred --------HHHHHHHHHCCCHHHHHHHHH
Confidence 245677889999999887643
No 483
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.89 E-value=1.8e+02 Score=27.42 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHc
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK-LRESKSYCENALRIYA 361 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~ 361 (476)
..|........+.+.+.+--..|.+++.. ||..+..|..-|.-.+..+. .+.|...|.++++..+
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 34444444444555566666777777766 66667777666666555554 6777777777777643
No 484
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=55.33 E-value=29 Score=18.11 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh----cHHHHHHHHHHHHH
Q 011858 415 GIEARMGVMFYMVG----RYEEARSSFESAIA 442 (476)
Q Consensus 415 ~~~~~l~~~~~~~g----~~~~A~~~~~~a~~ 442 (476)
.+.+.+|.+|..-. +..+|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
No 485
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=55.29 E-value=21 Score=31.45 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 213 AEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESA-----------DRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 213 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
+.-.+..++++.|..-+.+++................ ...+++.+-...+.+..|+..-..+++
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~----- 303 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR----- 303 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc-----
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE 348 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 348 (476)
........++..+..+....++++|++.+..+... .|....+...+..+-....++.+
T Consensus 304 -~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 304 -DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred -cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHHHHH
No 486
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=54.57 E-value=58 Score=21.28 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHh
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL-GETDPRVGETCRYLAEAHVQA 219 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 219 (476)
+...|.-.-..|++++|+.+|.++++.+.... ...++.....+.....-|...
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~R 62 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDR 62 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
No 487
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=54.46 E-value=2.5e+02 Score=28.48 Aligned_cols=406 Identities=9% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhh
Q 011858 33 PRPKPPSPSPSSRSKATPSPTQSRNKKPPPDFTDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAA 112 (476)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~ 112 (476)
+....++.++.+.-+..-....+.....+..+.+....++........+...+...|+ +++-...-.++.+++
T Consensus 71 ~~~s~~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~------ 143 (881)
T KOG0128|consen 71 EGSSLESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIA------ 143 (881)
T ss_pred ccccCCccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc------
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHH
Q 011858 113 EAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLK 192 (476)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 192 (476)
...+....-|..-=......++-.++...|++++.- ..........+......+..+...++++.-...|.+++.
T Consensus 144 --pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d---y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 144 --PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD---YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred --CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc---cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH---HHHHHhCCHHHHHH
Q 011858 193 IQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMA---LICEAKGDYEAALE 269 (476)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~ 269 (476)
....... ........+...-..|...-..++-+.++...+... .+.......+.... .......+++.|..
T Consensus 219 s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-----~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~ 292 (881)
T KOG0128|consen 219 SLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-----LDEDTRGWDLSEQSKAHVYDVETKKLDDALK 292 (881)
T ss_pred hhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-----chhhhhHHHHHHHHhcchHHHHhccHHHHHH
Q ss_pred HHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH-HHcCChh
Q 011858 270 HLVLASMAMIANGQ-DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY-HRTGKLR 347 (476)
Q Consensus 270 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 347 (476)
-+.+.+..+..... .+..-..+..+-......|+...-...+++++.- .......|...+... ..++-.+
T Consensus 293 ~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~ 364 (881)
T KOG0128|consen 293 NLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQ 364 (881)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh--------ccccHHHHhhhhhhccccccccc
Q ss_pred HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh
Q 011858 348 ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV 427 (476)
Q Consensus 348 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (476)
.+...+-+++..+ ..+........+.+.+..+-.+.+-.-+...-+..-........+.....-....
T Consensus 365 ~~~~~~~ra~R~c------------p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s 432 (881)
T KOG0128|consen 365 RGVSVHPRAVRSC------------PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDS 432 (881)
T ss_pred ccccccchhhcCC------------chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q ss_pred hcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccccccCC
Q 011858 428 GRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDRRGC 476 (476)
Q Consensus 428 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 476 (476)
.+++.=.+.|+.|...+....+.........+...+..+..++..-..|
T Consensus 433 ~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~ 481 (881)
T KOG0128|consen 433 QDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKA 481 (881)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhh
No 488
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=54.37 E-value=1.9e+02 Score=27.06 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----------HcCCChhH
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI----------ANGQDNEV 287 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----------~~~~~~~~ 287 (476)
+..+.-.|+.++.++++......+........ --.++.-|...-+..+-++.+..-....+ ..+.+++.
T Consensus 258 kk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~ 336 (615)
T KOG0508|consen 258 KKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDV 336 (615)
T ss_pred hhHHHHHHHHHHHHHHHhhhhccccccccCCC-CchhhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC--------------------hh
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK--------------------LR 347 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~ 347 (476)
.......|-+|...|+++..++.+.-|+++.++.+.+-.+.....+...++++..+=+ +.
T Consensus 337 sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d~~~~g~~~~~i~~~~~~~Vl~ 416 (615)
T KOG0508|consen 337 SYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQDFAAKGSLGTQIGFDDLMGVLT 416 (615)
T ss_pred eeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhhhhhcCCCCCccchHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 348 ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 348 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
++..-.++++.................+...+..++.+....++-...-.+.+
T Consensus 417 k~vlEvEra~~~t~~p~d~~~~~k~l~~~lhLv~llek~~ct~e~~~~k~~~i 469 (615)
T KOG0508|consen 417 KSVLEVERALALTREPLDPAQYNKALYIILHLVCLLEKVECTPEQDHLKHQTI 469 (615)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
No 489
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=54.02 E-value=62 Score=30.02 Aligned_cols=61 Identities=28% Similarity=0.583 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011858 1 MPGLVSVKTPPDAPPPRITVPEPRPEPPTTPVPRPKPPSPSPSSRSKATPSPTQSRNKKPPP 62 (476)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (476)
||......-|++++.-..+....+|.|++++.+...+++.+++ .|.+++.|+.+.+....+
T Consensus 387 ~p~~Pgr~aPp~PP~~~ps~~p~~PpPPPPs~~g~~Pp~apPp-pPPPPPmPs~gagppPPP 447 (569)
T KOG3671|consen 387 PPAPPGRPAPPPPPLGNPSAVPVPPPPPPPSLPGSAPPSAPPP-PPPPPPMPSTGAGPPPPP 447 (569)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC-CCcCCCCCccCCCCCCCC
No 490
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.97 E-value=91 Score=23.33 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 381 AIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.+...+|+-++-.+.+.....-....+ .++..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p-------~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINP-------EFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCH-------HHHHHHHHHHHHhcchhhHHHHHHHHHH
No 491
>PRK15313 autotransport protein MisL; Provisional
Probab=53.51 E-value=72 Score=32.60 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 011858 2 PGLVSVKTPPDAPPPRITVPEPRPEPPTTPVPRPKPP---SPSPSSRSKATPSPTQSRNKKPPPDFTDASLDNPDLGPFL 78 (476)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (476)
|-......|++..|.++..+...|..|++++|.|.+| .|.|..++.|.|..+........|............-..-
T Consensus 566 p~p~~P~~p~p~~~~P~d~~p~~p~~p~p~~p~P~~p~~~~p~P~~p~~P~p~~P~~~~~~~Pp~~~~~yRPEvgsY~AN 645 (955)
T PRK15313 566 PDPVDPVIPDPVIPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTPPITEHQFRPEVGSYLAN 645 (955)
T ss_pred CCCCCcccccccCCCCCccccccccCCccccCCccCccccCCCCccccCCCCCcccccccCCCcccccccCcchHHHHHH
Q ss_pred HHHHHHHH
Q 011858 79 LKLARDTI 86 (476)
Q Consensus 79 ~~~a~~~~ 86 (476)
...+..++
T Consensus 646 l~AAn~LF 653 (955)
T PRK15313 646 NYAANTLF 653 (955)
T ss_pred HHHHHHHh
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.33 E-value=1.8e+02 Score=26.55 Aligned_cols=117 Identities=12% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHH-----------
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYE----------- 188 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------- 188 (476)
....-...+..++..++|..|...|+++... ...+..............|..++..-++++|.+.++
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r--~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~ 206 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRR--LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQ 206 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhh
Q ss_pred ----HHHHHHHHHhcCCchh------------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 189 ----EGLKIQIEALGETDPR------------------VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 189 ----~al~~~~~~~~~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
...+...+....-.+. ...-+..=|..-...|+|+.|...+-+++++..+
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 207 VTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred hhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
No 493
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=53.18 E-value=93 Score=23.85 Aligned_cols=77 Identities=23% Similarity=0.540 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 011858 1 MPGLVSVKTPPDAPPPRITVPEPRPEPPTTPVPRPKPPSPSPSSRSKATPSPTQSRNKKPPPDFTDASLDNPDLGPFLLK 80 (476)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (476)
|||+-.++.....+++....+.....+++++.....++.+++. ....+...........-.....++|..+..+-.
T Consensus 47 IpgLe~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~dP~y~kYfKM 122 (148)
T PF10152_consen 47 IPGLEDVTDEASVPPPPVPAPSSGGPPPPPPAAAEAPAPPPPA----PSAADPAEPEPEAPAEGGVTVKDDPRYAKYFKM 122 (148)
T ss_pred ccccccccccccCCCCCccccccCCCCCCccccccCCCCCccc----ccCCCcccCCCcccccccccccCCccHHHHHHH
Q ss_pred H
Q 011858 81 L 81 (476)
Q Consensus 81 ~ 81 (476)
+
T Consensus 123 l 123 (148)
T PF10152_consen 123 L 123 (148)
T ss_pred H
No 494
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.15 E-value=43 Score=32.78 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011858 1 MPGLVSVKTPPDAPPPRITVPEPRPEPPTTPVPRPKPPSPSPSSRSKATPSPTQSRNKKPP 61 (476)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (476)
.|......+++++.+...+++.+.|.+|+.|.+.+..+.|.+.++..+.|.|.........
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (585)
T PRK14950 398 PPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALI 458 (585)
T ss_pred CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCcCCCCCCCCCCcccccCCC
No 495
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=53.07 E-value=1.8e+02 Score=26.42 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHhcCC-------CCCchHHHHHHHHHHHHHHcCChhHH
Q 011858 286 EVAAIDVSIGNIYLSLC---------RFDEAVFSYQKALTVFKSSKG-------DNHPSVASVFVRLADLYHRTGKLRES 349 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A 349 (476)
..+.+++++|.++...+ ...+|..+|++|-.++.-+.. ........++..+..+... +.=
T Consensus 104 Eka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLA----QAQ 179 (355)
T cd09241 104 ERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLA----QAQ 179 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHH----HHH
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhc
Q 011858 350 KSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGR 429 (476)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (476)
.-.+++++.- +.....++......+..|....+.-.....+.......-.. ......+.+++..|......++
T Consensus 180 E~~~~Kai~~------~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~i~~~W~~~v~~-K~~~f~A~A~y~~a~~~~e~~k 252 (355)
T cd09241 180 ECFWQKAISD------GTKDSLIAKLAAQVSDYYQEALKYANKSDLIRSDWINHLKV-KKHHFKAAAHYRMALVALEKSK 252 (355)
T ss_pred HHHHHHHHhc------CCcchHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011858 430 YEEARSSFESAIAKLRA 446 (476)
Q Consensus 430 ~~~A~~~~~~a~~~~~~ 446 (476)
+-+++..++.|.....+
T Consensus 253 ~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 253 YGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHHH
No 496
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=52.78 E-value=40 Score=29.71 Aligned_cols=50 Identities=28% Similarity=0.641 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011858 2 PGLVSVKTPPDAPPPRITVPEP-RPEPPTTPVPRPKPPSPSPSSRSKATPS 51 (476)
Q Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 51 (476)
|...+.+.|.+.+++....|-+ +|.+|.++.|.+.++..++..++.++|+
T Consensus 169 ~a~~a~p~~~s~~~p~~~apv~e~p~~p~~~~P~~~~a~k~~v~~~~~~p~ 219 (457)
T KOG0559|consen 169 PAAAAPPKPSSKPPPKEAAPVAESPPAPSSPEPVPASAKKPSVAQPKPPPS 219 (457)
T ss_pred CCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCccccCccccCCCCCcc
No 497
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.76 E-value=34 Score=29.06 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
...+.........++=..+...++++.|..+.++.+.+.+..+ .-....|.+|.++|-+.-|++-++..++.+
T Consensus 173 ~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp-------~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 173 QASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDP-------YEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh-------hhccCcHHHHHhcCCchhhHHHHHHHHHhC
Q ss_pred HH
Q 011858 445 RA 446 (476)
Q Consensus 445 ~~ 446 (476)
.+
T Consensus 246 P~ 247 (269)
T COG2912 246 PD 247 (269)
T ss_pred CC
No 498
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=52.40 E-value=1.3e+02 Score=24.80 Aligned_cols=131 Identities=12% Similarity=-0.028 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 166 GYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
.+.....-+...+...+++...+.-++. .|........+-.++.-.|+|++|...++-+-++.++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~------- 67 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ------- 67 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc-------
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALT 316 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 316 (476)
+...+.+|..+=+-+.+....-..-..-...+.+.........-+..+..-|.-+.+..+-+.+++
T Consensus 68 -----~t~~a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~ 133 (273)
T COG4455 68 -----DTVGASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALK 133 (273)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHh
No 499
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.34 E-value=98 Score=23.19 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 296 NIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
.++..+|+-++-.+.+....+- ....+..+..+|.+|.+.|+..++-+.+.+|-+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn--------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN--------EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 500
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=52.27 E-value=15 Score=33.69 Aligned_cols=26 Identities=42% Similarity=0.977 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011858 25 PEPPTTPVPRPKPPSPSPSSRSKATPS 51 (476)
Q Consensus 25 ~~~~~~p~~~~~~~~~~~~~~~~~~~~ 51 (476)
..|+++|.|.|.|+++|++ .|.|+|.
T Consensus 3 ~~p~P~P~P~P~P~P~P~P-~PePtP~ 28 (465)
T PF01690_consen 3 DEPPPSPGPSPTPPPPPAP-TPEPTPA 28 (465)
T ss_pred CCCCCCCCCCCCCCCCCcc-cCCCccc
Done!