Query 011858
Match_columns 476
No_of_seqs 1526 out of 2858
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 16:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 100.0 8.5E-34 2.9E-38 260.1 37.5 341 116-473 4-364 (406)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-34 5.4E-39 263.1 27.5 325 72-471 64-388 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6E-34 2E-38 259.3 29.3 331 69-474 27-357 (388)
4 3sf4_A G-protein-signaling mod 100.0 4.1E-32 1.4E-36 249.0 40.9 346 73-439 7-372 (406)
5 4a1s_A PINS, partner of inscut 100.0 5.1E-32 1.7E-36 248.7 37.3 320 118-452 45-381 (411)
6 3ro2_A PINS homolog, G-protein 100.0 2.8E-31 9.7E-36 236.8 39.3 313 121-448 5-337 (338)
7 2y4t_A DNAJ homolog subfamily 100.0 2.4E-31 8.1E-36 247.3 31.0 317 64-443 15-358 (450)
8 3ieg_A DNAJ homolog subfamily 100.0 9.9E-31 3.4E-35 235.5 31.9 307 74-443 2-335 (359)
9 4a1s_A PINS, partner of inscut 100.0 7.6E-30 2.6E-34 234.2 36.8 316 71-406 44-376 (411)
10 3ro2_A PINS homolog, G-protein 100.0 5.4E-29 1.9E-33 222.0 37.5 312 75-406 5-336 (338)
11 3ulq_A Response regulator aspa 100.0 8.3E-29 2.8E-33 224.7 37.0 352 74-450 11-375 (383)
12 3fp2_A TPR repeat-containing p 100.0 7.7E-30 2.6E-34 242.7 30.5 340 73-474 23-480 (537)
13 2gw1_A Mitochondrial precursor 100.0 3.3E-29 1.1E-33 237.0 30.6 346 74-474 5-433 (514)
14 2xpi_A Anaphase-promoting comp 100.0 2.1E-28 7E-33 236.0 34.7 338 73-467 198-595 (597)
15 3hym_B Cell division cycle pro 100.0 4.5E-29 1.5E-33 222.0 25.7 304 69-431 16-322 (330)
16 2gw1_A Mitochondrial precursor 100.0 6.4E-29 2.2E-33 235.1 27.9 348 74-474 38-467 (514)
17 4g1t_A Interferon-induced prot 100.0 4E-30 1.4E-34 240.5 19.2 359 70-475 46-449 (472)
18 2y4t_A DNAJ homolog subfamily 100.0 9.8E-29 3.3E-33 229.7 27.7 356 69-475 54-444 (450)
19 3fp2_A TPR repeat-containing p 100.0 7.9E-29 2.7E-33 235.8 27.6 327 67-447 51-495 (537)
20 2xpi_A Anaphase-promoting comp 100.0 1.2E-28 4.1E-33 237.6 28.2 350 76-474 118-568 (597)
21 3hym_B Cell division cycle pro 100.0 5.9E-29 2E-33 221.2 23.8 298 121-472 22-321 (330)
22 1fch_A Peroxisomal targeting s 100.0 1.6E-29 5.5E-34 228.4 20.4 319 84-449 34-365 (368)
23 3q15_A PSP28, response regulat 100.0 8.2E-27 2.8E-31 211.0 37.6 338 86-449 23-371 (378)
24 3ieg_A DNAJ homolog subfamily 100.0 5.4E-28 1.9E-32 217.6 27.3 306 121-474 3-324 (359)
25 4eqf_A PEX5-related protein; a 100.0 3.5E-28 1.2E-32 219.3 25.1 289 119-445 63-358 (365)
26 1fch_A Peroxisomal targeting s 100.0 1.9E-28 6.4E-33 221.5 19.5 300 129-474 33-348 (368)
27 4g1t_A Interferon-induced prot 100.0 7.7E-28 2.6E-32 225.0 23.3 331 70-449 89-465 (472)
28 4eqf_A PEX5-related protein; a 100.0 1.4E-27 4.8E-32 215.4 24.1 292 73-406 63-360 (365)
29 3ulq_A Response regulator aspa 100.0 2.7E-26 9.2E-31 208.1 32.3 336 118-475 9-358 (383)
30 1hz4_A MALT regulatory protein 100.0 3.3E-25 1.1E-29 200.4 38.0 315 119-449 12-328 (373)
31 3cv0_A Peroxisome targeting si 100.0 9.9E-27 3.4E-31 206.5 25.8 291 119-449 19-321 (327)
32 3nf1_A KLC 1, kinesin light ch 100.0 6.6E-26 2.2E-30 199.7 29.8 285 65-362 17-310 (311)
33 3nf1_A KLC 1, kinesin light ch 100.0 1.1E-25 3.9E-30 198.2 30.3 275 164-445 27-309 (311)
34 3cv0_A Peroxisome targeting si 99.9 5.2E-26 1.8E-30 201.8 23.9 283 74-408 20-321 (327)
35 3edt_B KLC 2, kinesin light ch 99.9 2.3E-25 7.9E-30 193.3 26.6 269 174-443 11-281 (283)
36 2h6f_A Protein farnesyltransfe 99.9 1.5E-26 5.1E-31 206.3 19.2 258 68-386 90-366 (382)
37 3uq3_A Heat shock protein STI1 99.9 2.2E-24 7.4E-29 184.5 31.7 254 118-422 2-255 (258)
38 3q15_A PSP28, response regulat 99.9 4.1E-24 1.4E-28 193.2 35.1 266 121-406 101-369 (378)
39 1hz4_A MALT regulatory protein 99.9 8.4E-24 2.9E-28 191.2 34.7 313 74-406 13-326 (373)
40 3uq3_A Heat shock protein STI1 99.9 1.5E-24 5.2E-29 185.4 27.9 238 164-449 5-242 (258)
41 3u4t_A TPR repeat-containing p 99.9 7E-25 2.4E-29 189.1 22.2 260 122-425 4-266 (272)
42 3edt_B KLC 2, kinesin light ch 99.9 6.1E-24 2.1E-28 184.3 26.8 268 131-402 11-281 (283)
43 2h6f_A Protein farnesyltransfe 99.9 6.7E-25 2.3E-29 195.6 19.5 256 116-427 92-366 (382)
44 2xm6_A Protein corresponding t 99.9 7E-23 2.4E-27 191.8 32.2 308 72-468 36-411 (490)
45 2xm6_A Protein corresponding t 99.9 6.4E-23 2.2E-27 192.0 31.9 298 73-443 73-432 (490)
46 3u4t_A TPR repeat-containing p 99.9 5.2E-24 1.8E-28 183.7 20.1 244 165-444 4-251 (272)
47 2pl2_A Hypothetical conserved 99.9 3.9E-24 1.3E-28 176.9 17.1 198 120-357 4-212 (217)
48 2pl2_A Hypothetical conserved 99.9 3.1E-24 1.1E-28 177.5 15.8 198 205-441 4-212 (217)
49 3mkr_A Coatomer subunit epsilo 99.9 1E-21 3.5E-26 169.6 28.1 280 83-437 7-288 (291)
50 1qqe_A Vesicular transport pro 99.9 3.7E-22 1.3E-26 173.2 24.2 226 209-442 40-268 (292)
51 1qqe_A Vesicular transport pro 99.9 4.7E-22 1.6E-26 172.5 24.3 230 165-404 38-271 (292)
52 2ifu_A Gamma-SNAP; membrane fu 99.9 2.1E-21 7.3E-26 169.7 27.3 249 133-394 3-253 (307)
53 2ifu_A Gamma-SNAP; membrane fu 99.9 1.3E-21 4.6E-26 171.0 25.3 248 176-435 3-253 (307)
54 1ouv_A Conserved hypothetical 99.9 7.5E-21 2.6E-25 163.7 27.5 227 71-360 2-252 (273)
55 1ouv_A Conserved hypothetical 99.9 7.4E-21 2.5E-25 163.8 26.1 228 118-405 3-254 (273)
56 3mkr_A Coatomer subunit epsilo 99.9 2.9E-21 1E-25 166.8 21.8 256 129-444 7-265 (291)
57 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.3E-21 7.9E-26 167.3 19.7 259 127-437 11-269 (275)
58 2ho1_A Type 4 fimbrial biogene 99.9 1.6E-20 5.6E-25 159.7 24.2 206 164-406 37-242 (252)
59 2q7f_A YRRB protein; TPR, prot 99.9 8.9E-22 3E-26 166.5 15.8 218 164-427 23-240 (243)
60 2q7f_A YRRB protein; TPR, prot 99.9 2.1E-21 7.1E-26 164.3 17.0 206 118-362 20-225 (243)
61 4abn_A Tetratricopeptide repea 99.9 4.1E-21 1.4E-25 178.0 20.1 219 185-440 82-318 (474)
62 4abn_A Tetratricopeptide repea 99.9 3.2E-21 1.1E-25 178.7 19.4 236 78-355 57-317 (474)
63 3vtx_A MAMA; tetratricopeptide 99.9 1.9E-20 6.6E-25 150.8 21.0 168 248-445 5-172 (184)
64 2ho1_A Type 4 fimbrial biogene 99.9 7E-20 2.4E-24 155.7 23.8 208 118-362 33-241 (252)
65 2vq2_A PILW, putative fimbrial 99.9 1.3E-19 4.3E-24 151.3 24.8 205 165-406 9-215 (225)
66 3vtx_A MAMA; tetratricopeptide 99.9 2.2E-20 7.6E-25 150.5 18.3 166 165-360 6-171 (184)
67 4gyw_A UDP-N-acetylglucosamine 99.9 1E-20 3.6E-25 181.7 19.2 174 245-448 6-179 (723)
68 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.9E-20 6.4E-25 161.6 18.8 252 88-396 18-269 (275)
69 2vq2_A PILW, putative fimbrial 99.9 4.7E-19 1.6E-23 147.8 26.1 208 117-361 4-213 (225)
70 3e4b_A ALGK; tetratricopeptide 99.8 2.6E-21 8.9E-26 178.2 11.4 307 79-468 7-366 (452)
71 4gyw_A UDP-N-acetylglucosamine 99.8 2.9E-20 9.8E-25 178.7 18.6 174 202-406 5-178 (723)
72 3gw4_A Uncharacterized protein 99.8 1.1E-18 3.8E-23 143.0 23.0 198 259-469 3-200 (203)
73 3u3w_A Transcriptional activat 99.8 9.8E-19 3.4E-23 151.9 22.4 194 250-451 77-274 (293)
74 3e4b_A ALGK; tetratricopeptide 99.8 1.3E-19 4.5E-24 166.9 17.5 297 75-442 35-386 (452)
75 4i17_A Hypothetical protein; T 99.8 3.2E-19 1.1E-23 149.0 18.2 189 121-340 7-224 (228)
76 3qky_A Outer membrane assembly 99.8 8.5E-19 2.9E-23 149.7 20.3 224 117-393 11-252 (261)
77 2qfc_A PLCR protein; TPR, HTH, 99.8 1.2E-18 4.1E-23 151.4 21.2 195 251-450 78-273 (293)
78 2ooe_A Cleavage stimulation fa 99.8 2E-17 6.7E-22 156.5 30.9 318 69-443 7-454 (530)
79 3gw4_A Uncharacterized protein 99.8 3.8E-18 1.3E-22 139.8 22.7 194 217-424 3-197 (203)
80 4b4t_Q 26S proteasome regulato 99.8 6.7E-18 2.3E-22 155.8 24.5 239 209-452 7-254 (434)
81 4i17_A Hypothetical protein; T 99.8 1.7E-18 5.7E-23 144.7 18.2 171 207-407 8-214 (228)
82 3qky_A Outer membrane assembly 99.8 2.4E-18 8.3E-23 146.9 19.1 211 202-435 11-253 (261)
83 2ooe_A Cleavage stimulation fa 99.8 3.4E-17 1.1E-21 154.9 27.3 227 182-449 256-498 (530)
84 2qfc_A PLCR protein; TPR, HTH, 99.8 8E-18 2.7E-22 146.1 21.2 197 203-406 72-270 (293)
85 2ond_A Cleavage stimulation fa 99.8 1.7E-17 5.7E-22 145.2 22.4 227 138-407 33-275 (308)
86 3u3w_A Transcriptional activat 99.8 4.2E-17 1.5E-21 141.6 24.3 198 118-321 72-270 (293)
87 4b4t_Q 26S proteasome regulato 99.8 1.1E-16 3.8E-21 147.6 28.5 236 123-363 6-249 (434)
88 2ond_A Cleavage stimulation fa 99.8 1.6E-17 5.6E-22 145.2 20.0 226 181-448 33-275 (308)
89 3ro3_A PINS homolog, G-protein 99.8 4.5E-17 1.5E-21 128.1 19.7 161 282-448 3-163 (164)
90 3as5_A MAMA; tetratricopeptide 99.8 5.7E-17 1.9E-21 130.6 19.2 171 246-446 6-176 (186)
91 3ro3_A PINS homolog, G-protein 99.8 2E-16 6.7E-21 124.4 21.2 159 201-363 4-162 (164)
92 1xi4_A Clathrin heavy chain; a 99.8 9.9E-16 3.4E-20 150.7 28.8 297 78-442 988-1344(1630)
93 3as5_A MAMA; tetratricopeptide 99.8 6E-17 2E-21 130.4 17.3 174 202-406 4-177 (186)
94 2pzi_A Probable serine/threoni 99.7 1.8E-17 6.2E-22 160.4 16.0 203 118-363 391-602 (681)
95 4ga2_A E3 SUMO-protein ligase 99.7 9.2E-18 3.2E-22 129.4 11.1 147 253-429 2-149 (150)
96 2pzi_A Probable serine/threoni 99.7 6.3E-18 2.2E-22 163.6 11.4 201 217-448 402-603 (681)
97 4ga2_A E3 SUMO-protein ligase 99.7 3.4E-17 1.2E-21 126.2 12.6 147 211-388 2-149 (150)
98 3urz_A Uncharacterized protein 99.7 1.6E-16 5.4E-21 130.2 17.0 166 249-445 5-188 (208)
99 3n71_A Histone lysine methyltr 99.7 3.5E-16 1.2E-20 143.1 20.8 152 292-444 313-465 (490)
100 3urz_A Uncharacterized protein 99.7 4.2E-17 1.4E-21 133.6 13.1 169 206-406 4-190 (208)
101 2yhc_A BAMD, UPF0169 lipoprote 99.7 2E-16 6.8E-21 131.4 17.1 199 165-406 5-217 (225)
102 3n71_A Histone lysine methyltr 99.7 6.2E-16 2.1E-20 141.4 21.1 154 124-278 312-465 (490)
103 1xi4_A Clathrin heavy chain; a 99.7 1.3E-15 4.6E-20 149.8 24.5 295 81-440 1055-1381(1630)
104 2yhc_A BAMD, UPF0169 lipoprote 99.7 4.9E-15 1.7E-19 123.0 21.9 180 248-442 4-212 (225)
105 1b89_A Protein (clathrin heavy 99.7 5E-17 1.7E-21 143.2 9.0 268 76-439 33-307 (449)
106 4gco_A Protein STI-1; structur 99.7 1.7E-15 5.9E-20 112.5 14.8 117 283-423 8-124 (126)
107 3dra_A Protein farnesyltransfe 99.7 2.5E-14 8.5E-19 122.3 21.3 236 76-358 33-286 (306)
108 1b89_A Protein (clathrin heavy 99.6 5.7E-17 2E-21 142.8 4.5 258 87-445 15-274 (449)
109 3rjv_A Putative SEL1 repeat pr 99.6 1.2E-14 4E-19 119.3 17.2 177 181-402 3-197 (212)
110 2r5s_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 118.6 12.9 169 72-276 3-172 (176)
111 4gcn_A Protein STI-1; structur 99.6 1.6E-14 5.4E-19 107.6 15.6 110 285-404 5-114 (127)
112 3rjv_A Putative SEL1 repeat pr 99.6 2.3E-14 7.8E-19 117.5 17.8 177 223-443 3-197 (212)
113 4f3v_A ESX-1 secretion system 99.6 1.3E-14 4.6E-19 120.8 15.0 210 166-405 9-240 (282)
114 3dra_A Protein farnesyltransfe 99.6 1.2E-13 4.1E-18 118.1 21.2 221 136-401 48-286 (306)
115 4gco_A Protein STI-1; structur 99.6 2.5E-14 8.4E-19 106.2 14.8 115 245-382 10-124 (126)
116 2r5s_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 117.6 11.7 164 251-443 9-173 (176)
117 3qou_A Protein YBBN; thioredox 99.6 2E-14 6.9E-19 123.9 15.9 168 248-443 117-284 (287)
118 4gcn_A Protein STI-1; structur 99.6 2.9E-14 9.8E-19 106.2 14.6 108 327-443 5-112 (127)
119 4f3v_A ESX-1 secretion system 99.6 1.1E-13 3.6E-18 115.4 19.3 222 75-337 7-248 (282)
120 1p5q_A FKBP52, FK506-binding p 99.6 5.1E-16 1.7E-20 137.0 5.7 163 176-360 125-295 (336)
121 3qou_A Protein YBBN; thioredox 99.6 1.8E-14 6.1E-19 124.2 15.3 171 72-277 114-284 (287)
122 3gyz_A Chaperone protein IPGC; 99.6 2.8E-15 9.5E-20 114.6 8.8 103 326-444 32-134 (151)
123 2vsy_A XCC0866; transferase, g 99.6 1.9E-14 6.4E-19 137.2 15.9 154 261-444 2-158 (568)
124 1a17_A Serine/threonine protei 99.6 2.6E-13 9E-18 106.7 19.1 142 286-449 11-152 (166)
125 2vsy_A XCC0866; transferase, g 99.6 2.1E-14 7.1E-19 136.9 14.8 157 219-406 2-161 (568)
126 3gyz_A Chaperone protein IPGC; 99.6 8.1E-14 2.8E-18 106.4 14.5 108 282-406 30-137 (151)
127 2fo7_A Synthetic consensus TPR 99.6 2.4E-13 8.3E-18 102.7 16.7 131 289-443 2-132 (136)
128 2hr2_A Hypothetical protein; a 99.6 3.9E-13 1.3E-17 101.0 16.7 129 287-417 10-146 (159)
129 1p5q_A FKBP52, FK506-binding p 99.6 2.6E-13 8.8E-18 119.7 18.4 148 285-448 144-299 (336)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.1E-13 3.7E-18 114.0 14.1 143 247-406 5-154 (213)
131 3qwp_A SET and MYND domain-con 99.5 4.5E-13 1.5E-17 120.9 18.9 135 126-261 292-426 (429)
132 3qww_A SET and MYND domain-con 99.5 4E-13 1.4E-17 120.9 18.2 124 131-255 308-431 (433)
133 2fo7_A Synthetic consensus TPR 99.5 5.8E-13 2E-17 100.6 16.4 132 250-404 3-134 (136)
134 3upv_A Heat shock protein STI1 99.5 8.9E-13 3E-17 98.3 16.7 121 287-425 3-123 (126)
135 3qww_A SET and MYND domain-con 99.5 3E-13 1E-17 121.7 16.6 121 299-420 309-430 (433)
136 2vgx_A Chaperone SYCD; alterna 99.5 1.4E-13 4.9E-18 105.4 12.3 109 282-407 15-123 (148)
137 2c2l_A CHIP, carboxy terminus 99.5 4.3E-14 1.5E-18 121.4 9.8 196 120-359 3-199 (281)
138 2vgx_A Chaperone SYCD; alterna 99.5 1E-13 3.4E-18 106.3 10.5 114 309-446 8-121 (148)
139 3qwp_A SET and MYND domain-con 99.5 3.8E-13 1.3E-17 121.4 15.8 133 295-428 294-427 (429)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.8E-13 1.6E-17 110.1 15.1 138 288-445 6-152 (213)
141 1a17_A Serine/threonine protei 99.5 2.1E-12 7.3E-17 101.4 17.9 140 246-406 11-150 (166)
142 2fbn_A 70 kDa peptidylprolyl i 99.5 7.5E-14 2.6E-18 113.4 9.7 167 251-441 7-184 (198)
143 3sz7_A HSC70 cochaperone (SGT) 99.5 2E-12 6.9E-17 101.3 16.8 108 283-407 6-113 (164)
144 2xcb_A PCRH, regulatory protei 99.5 2.8E-12 9.5E-17 97.7 16.4 109 282-407 12-120 (142)
145 3upv_A Heat shock protein STI1 99.5 2E-12 6.9E-17 96.3 15.2 121 119-258 2-122 (126)
146 2hr2_A Hypothetical protein; a 99.5 3.8E-12 1.3E-16 95.7 16.3 122 329-450 10-138 (159)
147 2lni_A Stress-induced-phosphop 99.5 1.5E-12 5.3E-17 98.0 13.8 122 284-429 12-133 (133)
148 2fbn_A 70 kDa peptidylprolyl i 99.5 2.7E-13 9.4E-18 110.0 10.2 162 167-350 7-176 (198)
149 2vyi_A SGTA protein; chaperone 99.5 2.5E-12 8.5E-17 96.5 14.6 123 284-430 8-130 (131)
150 3dss_A Geranylgeranyl transfer 99.4 5.2E-11 1.8E-15 102.3 23.7 227 132-406 40-308 (331)
151 3dss_A Geranylgeranyl transfer 99.4 3.4E-11 1.2E-15 103.5 22.4 225 174-444 39-305 (331)
152 3sz7_A HSC70 cochaperone (SGT) 99.4 3.8E-12 1.3E-16 99.7 14.5 109 116-241 6-114 (164)
153 3q49_B STIP1 homology and U bo 99.4 1.3E-11 4.4E-16 93.4 16.7 125 286-429 7-131 (137)
154 2xcb_A PCRH, regulatory protei 99.4 4.8E-12 1.6E-16 96.4 14.0 108 116-240 13-120 (142)
155 3rkv_A Putative peptidylprolyl 99.4 5.7E-12 2E-16 98.5 14.5 108 246-361 9-128 (162)
156 3q7a_A Farnesyltransferase alp 99.4 1E-11 3.5E-16 107.1 16.8 229 133-400 66-329 (349)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 8.2E-13 2.8E-17 121.6 10.6 160 176-357 246-413 (457)
158 2c2l_A CHIP, carboxy terminus 99.4 1.3E-12 4.5E-17 112.1 11.2 171 248-442 4-198 (281)
159 1elr_A TPR2A-domain of HOP; HO 99.4 1.4E-11 4.6E-16 92.4 15.2 125 287-429 3-127 (131)
160 2e2e_A Formate-dependent nitri 99.4 2.6E-12 8.9E-17 102.2 11.7 125 298-446 20-147 (177)
161 2lni_A Stress-induced-phosphop 99.4 1.1E-11 3.6E-16 93.3 14.4 122 71-221 12-133 (133)
162 3rkv_A Putative peptidylprolyl 99.4 1.1E-11 3.7E-16 96.9 14.4 131 285-430 8-148 (162)
163 1na0_A Designed protein CTPR3; 99.4 2.4E-11 8.3E-16 90.1 15.5 118 287-428 8-125 (125)
164 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 8.8E-12 3E-16 114.7 15.4 161 261-443 247-415 (457)
165 2vyi_A SGTA protein; chaperone 99.4 2.3E-11 8E-16 91.0 15.2 122 245-389 9-130 (131)
166 3q7a_A Farnesyltransferase alp 99.4 7.8E-11 2.7E-15 101.6 19.4 237 167-442 57-330 (349)
167 1ihg_A Cyclophilin 40; ppiase 99.3 2.3E-11 8E-16 108.2 16.2 132 289-436 224-363 (370)
168 1hxi_A PEX5, peroxisome target 99.3 1.1E-11 3.7E-16 91.2 11.3 100 290-406 19-118 (121)
169 3q49_B STIP1 homology and U bo 99.3 2.5E-11 8.6E-16 91.8 13.7 107 117-240 5-111 (137)
170 2e2e_A Formate-dependent nitri 99.3 8.4E-12 2.9E-16 99.2 11.5 126 258-406 20-148 (177)
171 1wao_1 Serine/threonine protei 99.3 1.6E-13 5.6E-18 126.7 1.7 128 287-438 5-134 (477)
172 1ihg_A Cyclophilin 40; ppiase 99.3 2.5E-11 8.5E-16 108.1 15.3 129 249-394 224-362 (370)
173 1wao_1 Serine/threonine protei 99.3 4.8E-13 1.6E-17 123.6 3.9 181 72-281 3-201 (477)
174 1hxi_A PEX5, peroxisome target 99.3 2.1E-11 7.1E-16 89.6 11.7 99 331-445 18-116 (121)
175 1elw_A TPR1-domain of HOP; HOP 99.3 8E-11 2.7E-15 86.2 14.3 113 288-424 4-116 (118)
176 2xev_A YBGF; tetratricopeptide 99.3 1.1E-10 3.9E-15 87.1 14.7 106 290-406 4-109 (129)
177 1na0_A Designed protein CTPR3; 99.3 1.8E-10 6.3E-15 85.2 15.6 117 248-387 9-125 (125)
178 2if4_A ATFKBP42; FKBP-like, al 99.3 1E-11 3.5E-16 109.5 9.8 134 289-446 180-331 (338)
179 1elr_A TPR2A-domain of HOP; HO 99.3 1.4E-10 4.7E-15 86.8 14.7 107 328-443 2-108 (131)
180 3mv2_B Coatomer subunit epsilo 99.3 1.2E-09 4E-14 92.4 21.2 251 129-443 21-282 (310)
181 2dba_A Smooth muscle cell asso 99.2 8.9E-11 3E-15 90.1 12.1 104 286-406 26-132 (148)
182 1elw_A TPR1-domain of HOP; HOP 99.2 3.4E-10 1.2E-14 82.8 14.1 113 248-383 4-116 (118)
183 4e6h_A MRNA 3'-END-processing 99.2 3.1E-07 1E-11 87.7 37.3 336 64-443 55-463 (679)
184 2xev_A YBGF; tetratricopeptide 99.2 1.3E-09 4.5E-14 81.2 17.1 104 251-362 5-108 (129)
185 2if4_A ATFKBP42; FKBP-like, al 99.2 3.7E-11 1.3E-15 105.9 8.2 142 248-406 179-332 (338)
186 4e6h_A MRNA 3'-END-processing 99.2 5.6E-09 1.9E-13 99.5 23.6 232 139-406 327-574 (679)
187 2dba_A Smooth muscle cell asso 99.2 8.3E-10 2.8E-14 84.5 14.9 121 70-216 23-143 (148)
188 2kck_A TPR repeat; tetratricop 99.2 4.9E-11 1.7E-15 86.5 6.9 103 288-405 6-109 (112)
189 3mv2_B Coatomer subunit epsilo 99.2 5.9E-09 2E-13 88.1 20.2 179 167-362 103-285 (310)
190 1zu2_A Mitochondrial import re 99.2 1.7E-10 5.8E-15 86.5 9.2 111 299-447 13-144 (158)
191 3k9i_A BH0479 protein; putativ 99.2 1E-10 3.6E-15 85.5 8.0 93 300-406 2-94 (117)
192 3k9i_A BH0479 protein; putativ 99.1 2.5E-10 8.4E-15 83.5 9.8 92 260-362 2-93 (117)
193 1dce_A Protein (RAB geranylger 99.1 5.1E-10 1.7E-14 105.2 13.7 176 134-348 41-244 (567)
194 1dce_A Protein (RAB geranylger 99.1 6.3E-10 2.2E-14 104.6 13.2 179 174-391 38-244 (567)
195 2kck_A TPR repeat; tetratricop 99.1 8.9E-11 3.1E-15 85.1 5.8 103 327-443 3-106 (112)
196 2l6j_A TPR repeat-containing p 99.0 2.8E-10 9.5E-15 82.3 5.6 99 288-397 4-102 (111)
197 1zu2_A Mitochondrial import re 99.0 7.6E-10 2.6E-14 83.0 6.6 89 133-238 14-123 (158)
198 2l6j_A TPR repeat-containing p 99.0 3E-10 1E-14 82.2 3.8 100 329-438 3-102 (111)
199 1na3_A Designed protein CTPR2; 99.0 1.2E-08 4.2E-13 70.4 11.9 86 285-387 6-91 (91)
200 2kat_A Uncharacterized protein 98.9 1.8E-08 6.2E-13 73.2 12.2 84 306-406 3-86 (115)
201 1na3_A Designed protein CTPR2; 98.9 1.3E-08 4.5E-13 70.2 10.9 87 326-428 5-91 (91)
202 2kat_A Uncharacterized protein 98.9 1.9E-08 6.5E-13 73.0 11.6 87 138-241 2-88 (115)
203 1klx_A Cysteine rich protein B 98.9 1.4E-08 4.8E-13 76.2 10.6 110 302-443 9-126 (138)
204 3ma5_A Tetratricopeptide repea 98.9 5.4E-09 1.8E-13 73.6 7.1 73 371-450 5-77 (100)
205 3ma5_A Tetratricopeptide repea 98.8 3.7E-08 1.3E-12 69.3 10.2 72 326-406 3-74 (100)
206 2uy1_A Cleavage stimulation fa 98.8 3E-06 1E-10 78.4 25.7 211 184-447 199-417 (493)
207 1klx_A Cysteine rich protein B 98.8 6.9E-08 2.4E-12 72.4 12.2 110 262-402 9-126 (138)
208 3txn_A 26S proteasome regulato 98.7 3.2E-06 1.1E-10 74.2 21.3 192 250-449 21-216 (394)
209 2kc7_A BFR218_protein; tetratr 98.7 7.7E-08 2.6E-12 67.5 8.6 90 292-406 4-94 (99)
210 3txn_A 26S proteasome regulato 98.7 5.8E-06 2E-10 72.6 21.9 193 207-406 20-214 (394)
211 2uy1_A Cleavage stimulation fa 98.7 1.8E-05 6.2E-10 73.2 25.5 150 267-440 198-380 (493)
212 2kc7_A BFR218_protein; tetratr 98.7 1.5E-07 5E-12 66.1 9.1 89 334-446 4-93 (99)
213 3u64_A Protein TP_0956; tetrat 98.6 1.6E-05 5.4E-10 65.6 19.9 87 304-406 179-273 (301)
214 2v5f_A Prolyl 4-hydroxylase su 98.5 2.3E-06 7.7E-11 60.4 12.2 81 249-337 6-87 (104)
215 3ly7_A Transcriptional activat 98.5 4.1E-06 1.4E-10 72.2 15.7 136 290-444 198-340 (372)
216 4g26_A Pentatricopeptide repea 98.5 1.9E-05 6.6E-10 73.0 19.7 166 251-442 29-203 (501)
217 2v5f_A Prolyl 4-hydroxylase su 98.4 3.1E-06 1.1E-10 59.7 10.8 72 373-444 5-76 (104)
218 4g26_A Pentatricopeptide repea 98.4 1.9E-05 6.7E-10 73.0 18.9 168 208-402 28-204 (501)
219 3ly7_A Transcriptional activat 98.4 2.5E-05 8.7E-10 67.4 16.9 137 208-361 198-341 (372)
220 4b4t_P 26S proteasome regulato 98.3 0.00046 1.6E-08 62.7 24.4 222 219-450 29-254 (445)
221 3ffl_A Anaphase-promoting comp 98.3 2.6E-05 8.7E-10 58.1 13.0 124 250-383 22-165 (167)
222 3u64_A Protein TP_0956; tetrat 98.3 4.3E-05 1.5E-09 63.1 15.5 107 326-446 148-272 (301)
223 3ffl_A Anaphase-promoting comp 98.3 2.4E-05 8.2E-10 58.3 12.3 110 122-231 21-147 (167)
224 3bee_A Putative YFRE protein; 98.2 8.2E-06 2.8E-10 55.8 8.8 72 71-153 2-75 (93)
225 3bee_A Putative YFRE protein; 98.1 2E-05 6.9E-10 53.8 9.1 67 287-361 5-74 (93)
226 1pc2_A Mitochondria fission pr 98.1 7E-05 2.4E-09 55.5 11.8 87 305-406 15-104 (152)
227 1pc2_A Mitochondria fission pr 98.0 0.0004 1.4E-08 51.5 13.6 68 286-361 30-102 (152)
228 4b4t_P 26S proteasome regulato 97.9 0.005 1.7E-07 55.9 22.3 217 178-406 30-251 (445)
229 4h7y_A Dual specificity protei 97.6 0.0017 5.8E-08 47.3 11.5 107 290-406 15-127 (161)
230 4h7y_A Dual specificity protei 97.5 0.0013 4.4E-08 47.9 10.0 109 326-443 9-123 (161)
231 1nzn_A CGI-135 protein, fissio 97.3 0.007 2.4E-07 43.1 11.5 89 304-407 17-108 (126)
232 4b4t_R RPN7, 26S proteasome re 97.1 0.0041 1.4E-07 56.2 11.9 109 328-443 129-237 (429)
233 4b4t_R RPN7, 26S proteasome re 97.1 0.0047 1.6E-07 55.9 11.8 110 285-402 128-237 (429)
234 4b4t_S RPN3, 26S proteasome re 97.1 0.0087 3E-07 54.1 12.9 145 215-362 145-302 (523)
235 4b4t_S RPN3, 26S proteasome re 96.8 0.0062 2.1E-07 55.0 9.7 146 257-406 145-303 (523)
236 3mkq_A Coatomer beta'-subunit; 96.5 0.095 3.2E-06 52.1 17.4 26 207-232 682-707 (814)
237 2wpv_A GET4, UPF0363 protein Y 96.5 0.3 1E-05 41.3 19.7 180 175-360 24-218 (312)
238 4gns_B Protein CSD3, chitin bi 96.4 0.066 2.2E-06 51.5 14.0 121 219-356 261-397 (754)
239 1nzn_A CGI-135 protein, fissio 96.3 0.12 4.3E-06 36.7 11.6 68 119-193 33-103 (126)
240 3lpz_A GET4 (YOR164C homolog); 96.2 0.48 1.6E-05 40.4 25.1 90 308-403 115-217 (336)
241 3spa_A Mtrpol, DNA-directed RN 96.1 0.077 2.6E-06 52.4 13.1 101 288-400 127-228 (1134)
242 3mkq_B Coatomer subunit alpha; 96.1 0.17 5.8E-06 38.5 12.3 102 130-274 14-115 (177)
243 3lpz_A GET4 (YOR164C homolog); 96.1 0.57 2E-05 39.9 25.1 181 175-360 23-217 (336)
244 3mkq_A Coatomer beta'-subunit; 95.9 0.088 3E-06 52.3 13.1 50 129-192 660-709 (814)
245 3mkq_B Coatomer subunit alpha; 95.9 0.19 6.3E-06 38.3 11.6 102 257-399 14-115 (177)
246 3spa_A Mtrpol, DNA-directed RN 95.9 0.26 8.9E-06 48.8 15.4 106 203-317 124-230 (1134)
247 4gns_B Protein CSD3, chitin bi 95.7 0.088 3E-06 50.7 11.6 123 301-440 261-397 (754)
248 3kae_A CDC27, possible protein 95.5 0.41 1.4E-05 35.7 11.8 98 251-359 36-143 (242)
249 2ff4_A Probable regulatory pro 95.3 0.35 1.2E-05 42.9 13.5 108 340-454 125-246 (388)
250 2ff4_A Probable regulatory pro 95.3 0.64 2.2E-05 41.3 15.0 107 125-239 119-238 (388)
251 3o48_A Mitochondria fission 1 95.2 0.53 1.8E-05 33.7 11.2 65 248-317 40-107 (134)
252 1y8m_A FIS1; mitochondria, unk 95.1 0.5 1.7E-05 34.3 10.8 66 247-317 38-106 (144)
253 4fhn_B Nucleoporin NUP120; pro 94.7 0.77 2.6E-05 47.4 15.5 102 251-356 845-964 (1139)
254 2wpv_A GET4, UPF0363 protein Y 94.4 2 6.9E-05 36.4 22.7 170 251-445 36-219 (312)
255 1y8m_A FIS1; mitochondria, unk 94.1 1.2 4E-05 32.4 14.5 69 286-361 37-108 (144)
256 3o48_A Mitochondria fission 1 93.9 1.2 4.2E-05 31.8 12.6 67 288-361 40-109 (134)
257 3re2_A Predicted protein; meni 93.5 2.8 9.7E-05 35.5 13.4 93 274-369 241-335 (472)
258 1ya0_A SMG-7 transcript varian 93.2 0.51 1.8E-05 43.1 9.7 63 288-358 152-214 (497)
259 4b4t_O 26S proteasome regulato 92.5 5.4 0.00019 35.3 17.4 131 226-361 59-200 (393)
260 3u84_A Menin; MLL, JUND, ledgf 92.5 4.3 0.00015 35.3 13.3 84 285-371 274-359 (550)
261 4fhn_B Nucleoporin NUP120; pro 92.4 2.6 8.8E-05 43.6 14.8 103 291-397 845-962 (1139)
262 3ubw_A 14-3-3E, 14-3-3 protein 92.0 4.2 0.00014 33.0 14.3 58 346-404 172-230 (261)
263 1ya0_A SMG-7 transcript varian 91.9 0.46 1.6E-05 43.5 7.7 62 165-234 153-214 (497)
264 1o9d_A 14-3-3-like protein C; 91.8 4.6 0.00016 33.0 14.0 182 207-403 9-208 (260)
265 2br9_A 14-3-3E, 14-3-3 protein 91.5 4.5 0.00016 32.4 14.0 184 208-405 7-205 (234)
266 3uzd_A 14-3-3 protein gamma; s 91.5 4.8 0.00016 32.5 14.5 183 209-405 7-206 (248)
267 3iqu_A 14-3-3 protein sigma; s 91.1 5 0.00017 32.1 12.1 180 208-403 10-206 (236)
268 4b4t_O 26S proteasome regulato 90.7 8.5 0.00029 34.1 16.9 138 92-237 55-200 (393)
269 3kae_A CDC27, possible protein 90.5 4.3 0.00015 30.4 19.0 96 209-317 36-143 (242)
270 4gq4_A Menin; tumor suppressor 89.9 9.3 0.00032 33.3 13.7 88 276-366 250-339 (489)
271 1zbp_A Hypothetical protein VP 89.6 5.1 0.00017 32.8 10.9 58 297-362 6-63 (273)
272 2npm_A 14-3-3 domain containin 89.5 7.5 0.00026 31.7 16.0 184 207-405 29-230 (260)
273 4ady_A RPN2, 26S proteasome re 89.1 19 0.00066 35.8 20.9 212 120-358 375-588 (963)
274 4aez_C MAD3, mitotic spindle c 86.8 10 0.00035 30.0 11.3 83 349-442 96-178 (223)
275 2br9_A 14-3-3E, 14-3-3 protein 86.7 11 0.00037 30.3 19.6 55 305-359 147-202 (234)
276 1zbp_A Hypothetical protein VP 86.5 3.4 0.00012 33.8 8.1 121 173-320 6-132 (273)
277 2crb_A Nuclear receptor bindin 86.3 2.1 7.3E-05 27.9 5.4 36 412-447 13-48 (97)
278 3ubw_A 14-3-3E, 14-3-3 protein 86.2 12 0.00042 30.4 19.8 177 167-359 34-228 (261)
279 2wvi_A Mitotic checkpoint seri 85.2 5.1 0.00018 30.0 8.0 82 350-442 43-124 (164)
280 2o8p_A 14-3-3 domain containin 85.0 13 0.00044 29.5 16.5 181 211-403 11-198 (227)
281 1o9d_A 14-3-3-like protein C; 84.7 15 0.00051 30.0 20.3 179 167-359 11-207 (260)
282 4ady_A RPN2, 26S proteasome re 83.9 37 0.0013 33.9 20.2 282 74-404 412-698 (963)
283 3esl_A Checkpoint serine/threo 83.7 14 0.00047 28.8 15.4 86 351-442 58-143 (202)
284 4aez_C MAD3, mitotic spindle c 83.3 14 0.00049 29.2 10.1 83 308-403 97-180 (223)
285 4a1g_A Mitotic checkpoint seri 82.7 4.6 0.00016 29.8 6.7 83 349-442 47-129 (152)
286 2rpa_A Katanin P60 ATPase-cont 81.4 6.7 0.00023 25.0 6.2 35 76-111 13-47 (78)
287 2npm_A 14-3-3 domain containin 80.9 21 0.00073 29.1 19.9 55 305-360 173-228 (260)
288 3uzd_A 14-3-3 protein gamma; s 80.6 21 0.00072 28.8 21.5 177 167-359 7-203 (248)
289 2crb_A Nuclear receptor bindin 80.3 7.2 0.00025 25.5 6.0 39 368-406 10-48 (97)
290 3efz_A 14-3-3 protein; 14-3-3, 79.9 23 0.0008 28.9 10.6 74 162-235 140-226 (268)
291 2wvi_A Mitotic checkpoint seri 79.5 13 0.00044 27.9 8.2 83 141-235 43-125 (164)
292 3t5v_B Nuclear mRNA export pro 79.4 35 0.0012 30.7 12.6 103 137-239 142-254 (455)
293 3t5v_B Nuclear mRNA export pro 79.2 18 0.00061 32.7 10.6 75 331-406 177-254 (455)
294 4a5x_A MITD1, MIT domain-conta 79.0 11 0.00038 24.6 7.9 37 74-111 15-51 (86)
295 3iqu_A 14-3-3 protein sigma; s 78.3 24 0.00084 28.2 21.0 178 167-359 11-205 (236)
296 4gq2_M Nucleoporin NUP120; bet 77.4 53 0.0018 33.2 14.6 89 291-385 843-948 (950)
297 3re2_A Predicted protein; meni 76.9 35 0.0012 29.2 12.8 60 225-287 276-335 (472)
298 1qsa_A Protein (soluble lytic 76.2 54 0.0018 31.1 19.5 128 294-442 220-347 (618)
299 4a1g_A Mitotic checkpoint seri 75.8 12 0.0004 27.7 7.0 81 268-360 48-131 (152)
300 2w2u_A Hypothetical P60 katani 75.4 12 0.00041 24.2 6.2 37 74-111 18-54 (83)
301 2v6y_A AAA family ATPase, P60 73.9 14 0.00048 23.9 6.3 37 74-111 10-46 (83)
302 3esl_A Checkpoint serine/threo 73.4 30 0.001 26.9 15.7 85 269-360 58-145 (202)
303 2ijq_A Hypothetical protein; s 73.0 7.5 0.00026 29.0 5.4 74 210-283 36-110 (161)
304 2w2u_A Hypothetical P60 katani 72.8 10 0.00034 24.6 5.4 27 421-447 26-52 (83)
305 3u84_A Menin; MLL, JUND, ledgf 72.5 50 0.0017 29.0 14.5 64 225-291 298-361 (550)
306 2rpa_A Katanin P60 ATPase-cont 72.3 6 0.0002 25.2 4.1 31 417-447 15-45 (78)
307 4gq2_M Nucleoporin NUP120; bet 71.5 22 0.00076 35.9 10.2 68 251-318 843-927 (950)
308 2v6y_A AAA family ATPase, P60 71.0 8.9 0.00031 24.8 4.9 27 421-447 18-44 (83)
309 2vkj_A TM1634; membrane protei 70.4 19 0.00065 23.3 6.7 49 73-131 51-100 (106)
310 2cwy_A Hypothetical protein TT 69.4 6.6 0.00022 26.2 4.1 68 379-449 7-74 (94)
311 3efz_A 14-3-3 protein; 14-3-3, 69.4 35 0.0012 27.9 8.9 72 121-193 142-226 (268)
312 2cpt_A SKD1 protein, vacuolar 68.9 22 0.00074 24.9 6.8 38 73-111 16-53 (117)
313 2ijq_A Hypothetical protein; s 68.1 24 0.00081 26.3 7.2 71 334-407 36-109 (161)
314 1wfd_A Hypothetical protein 15 67.5 24 0.00082 23.4 7.9 37 74-111 14-50 (93)
315 2v6x_A Vacuolar protein sortin 67.5 22 0.00077 23.0 7.2 38 73-111 11-48 (85)
316 4gq4_A Menin; tumor suppressor 66.7 67 0.0023 28.2 12.4 60 224-286 282-341 (489)
317 1qsa_A Protein (soluble lytic 63.3 1E+02 0.0035 29.2 23.7 168 254-441 220-408 (618)
318 2cwy_A Hypothetical protein TT 62.2 17 0.00059 24.2 5.0 68 212-283 7-74 (94)
319 3t5x_A PCI domain-containing p 60.3 45 0.0015 26.1 8.0 58 328-389 12-69 (203)
320 1wy6_A Hypothetical protein ST 58.9 47 0.0016 24.1 6.8 55 297-359 100-154 (172)
321 3ax2_A Mitochondrial import re 58.8 12 0.00042 23.4 3.5 31 332-362 19-49 (73)
322 3r9m_A BRO1 domain-containing 58.6 94 0.0032 27.2 11.7 35 413-447 252-286 (376)
323 3t5x_A PCI domain-containing p 58.3 36 0.0012 26.6 7.1 62 117-182 10-71 (203)
324 2r17_C Vacuolar protein sortin 57.9 83 0.0028 26.3 20.8 157 162-321 97-271 (298)
325 2r17_C Vacuolar protein sortin 56.9 87 0.003 26.2 20.4 156 287-447 98-271 (298)
326 1om2_A Protein (mitochondrial 55.5 19 0.00065 23.9 4.2 30 333-362 23-52 (95)
327 2v6x_A Vacuolar protein sortin 55.2 40 0.0014 21.8 6.0 32 374-405 14-45 (85)
328 3ax2_A Mitochondrial import re 54.7 17 0.00059 22.7 3.7 29 124-152 20-48 (73)
329 1om2_A Protein (mitochondrial 51.6 20 0.00069 23.8 3.8 30 377-406 24-53 (95)
330 3myv_A SUSD superfamily protei 50.8 29 0.00099 31.4 6.2 54 224-277 166-219 (454)
331 2qx5_A Nucleoporin NIC96; mRNA 50.8 1.7E+02 0.006 27.9 17.6 28 372-399 535-564 (661)
332 2wb7_A PT26-6P; extra chromoso 50.7 1.4E+02 0.0049 26.9 10.3 40 181-220 449-488 (526)
333 2o8p_A 14-3-3 domain containin 49.4 98 0.0033 24.6 19.9 178 169-360 11-198 (227)
334 3kez_A Putative sugar binding 48.8 33 0.0011 31.1 6.3 53 225-277 173-225 (461)
335 2cpt_A SKD1 protein, vacuolar 47.8 68 0.0023 22.3 7.7 32 167-198 21-52 (117)
336 2wb7_A PT26-6P; extra chromoso 45.8 1E+02 0.0035 27.8 8.4 11 137-147 455-465 (526)
337 3myv_A SUSD superfamily protei 45.8 44 0.0015 30.2 6.6 34 326-359 186-219 (454)
338 3rau_A Tyrosine-protein phosph 45.5 1.5E+02 0.0052 25.7 13.8 32 164-195 117-157 (363)
339 1zb1_A BRO1 protein; AIP1, BRO 45.2 1.6E+02 0.0055 25.9 10.6 59 391-449 217-292 (392)
340 3kez_A Putative sugar binding 43.6 48 0.0017 30.0 6.6 34 326-359 192-225 (461)
341 2vkj_A TM1634; membrane protei 42.1 69 0.0024 20.8 7.6 47 288-340 53-100 (106)
342 4a5x_A MITD1, MIT domain-conta 41.4 71 0.0024 20.7 8.7 32 167-198 19-50 (86)
343 3rau_A Tyrosine-protein phosph 40.8 1.8E+02 0.0062 25.2 13.5 35 413-447 251-285 (363)
344 2wm9_A Dedicator of cytokinesi 40.5 2E+02 0.0068 25.7 10.8 29 206-234 11-39 (428)
345 3mcx_A SUSD superfamily protei 39.4 37 0.0013 31.0 5.1 33 244-276 198-230 (477)
346 2yin_A DOCK2, dedicator of cyt 39.4 2.1E+02 0.0072 25.6 13.7 48 376-423 95-142 (436)
347 3lvg_A Clathrin heavy chain 1; 37.2 0.0005 1.7E-08 60.9 -25.5 244 121-435 54-325 (624)
348 2wm9_A Dedicator of cytokinesi 36.4 2.3E+02 0.008 25.3 11.2 34 160-193 7-40 (428)
349 3lew_A SUSD-like carbohydrate 35.8 84 0.0029 28.8 6.9 33 411-443 200-232 (495)
350 3mcx_A SUSD superfamily protei 34.5 56 0.0019 29.8 5.5 34 326-359 198-231 (477)
351 1zb1_A BRO1 protein; AIP1, BRO 34.0 2.4E+02 0.0083 24.7 12.5 37 285-321 254-290 (392)
352 3snx_A SUSD homolog, putative 32.2 96 0.0033 28.1 6.6 34 326-359 187-220 (460)
353 3hdx_A SUSD homolog, SUSD supe 32.1 1.1E+02 0.0038 27.8 7.1 34 369-402 193-226 (478)
354 3r9m_A BRO1 domain-containing 31.8 2.6E+02 0.0089 24.4 14.5 32 164-195 114-157 (376)
355 3snx_A SUSD homolog, putative 31.1 91 0.0031 28.2 6.2 32 245-276 188-219 (460)
356 3lew_A SUSD-like carbohydrate 30.2 1E+02 0.0035 28.2 6.4 32 245-276 200-231 (495)
357 1wy6_A Hypothetical protein ST 30.1 1.6E+02 0.0054 21.4 8.6 33 202-234 121-153 (172)
358 3mkr_B Coatomer subunit alpha; 29.6 2.6E+02 0.0089 23.7 11.2 31 75-106 102-132 (320)
359 2yin_A DOCK2, dedicator of cyt 28.1 3.3E+02 0.011 24.4 13.5 49 251-299 95-144 (436)
360 3hdx_A SUSD homolog, SUSD supe 27.8 1.3E+02 0.0045 27.3 6.7 34 410-443 193-226 (478)
361 3jq1_A SUSD superfamily protei 27.4 61 0.0021 29.5 4.5 31 245-275 177-207 (481)
362 2xze_A STAM-binding protein; h 24.6 1.5E+02 0.005 21.7 5.1 32 415-446 41-72 (146)
363 3qnk_A Putative lipoprotein; a 23.7 1.4E+02 0.0048 27.5 6.2 32 245-276 179-210 (517)
364 3qnk_A Putative lipoprotein; a 22.6 1.7E+02 0.0059 26.9 6.5 32 411-442 179-210 (517)
365 3jq1_A SUSD superfamily protei 20.9 1.1E+02 0.0038 27.8 4.9 33 326-358 176-208 (481)
366 3l8r_A PTCA, putative PTS syst 20.7 2.2E+02 0.0076 19.9 5.2 31 415-445 38-68 (120)
367 3k1s_A PTS system, cellobiose- 20.3 2.2E+02 0.0074 19.5 5.2 27 418-444 26-52 (109)
368 3i4g_A SUSD-like carbohydrate 20.3 2.4E+02 0.0081 26.1 6.9 32 411-442 195-226 (528)
369 2xze_A STAM-binding protein; h 20.2 2.2E+02 0.0074 20.8 5.3 32 373-404 40-71 (146)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=260.13 Aligned_cols=341 Identities=15% Similarity=0.167 Sum_probs=301.2
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
.....+..+..+|.++...|++++|+.+|++++...+ .++.....++..+|.++...|++++|+.++++++.+..
T Consensus 4 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3445566889999999999999999999999999853 23333346799999999999999999999999999987
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC------------
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD------------ 263 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------ 263 (476)
.. .+.+....++..+|.++...|++++|+.++++++++.+...+. ...+.++..+|.++...|+
T Consensus 79 ~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 79 TI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred hc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 75 4567788999999999999999999999999999999887654 4667789999999999999
Q ss_pred --------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 011858 264 --------YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVR 335 (476)
Q Consensus 264 --------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 335 (476)
+++|+.++++++.+....++.+....++.++|.++...|++++|+.++++++++.... .+......++.+
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 232 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSN 232 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHH
Confidence 9999999999999999998888999999999999999999999999999999998876 445666789999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHH
Q 011858 336 LADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAG 415 (476)
Q Consensus 336 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 415 (476)
+|.++...|++++|+.++++++.+.+.. .+......++..+|.++...|++++|+.++++++.+.+.. +.......
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~ 308 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGR 308 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHH
Confidence 9999999999999999999999998774 3566678899999999999999999999999999999887 66677788
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccccc
Q 011858 416 IEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDR 473 (476)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 473 (476)
++..+|.+|...|++++|+.++++++++.+..+.. .....++..+|.++..+|+..
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK--SGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHHHhhHhH
Confidence 99999999999999999999999999999988764 344577888888888887653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-34 Score=263.10 Aligned_cols=325 Identities=18% Similarity=0.235 Sum_probs=189.3
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
|..+..+..+|..+...|+ +++|+..|++++++ .|....++..+|.++...|++++|+..|++++...
T Consensus 64 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQ-LQEAIEHYRHALRL-----------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHc-----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444444444444442 44444444444443 23333344444555555555555555554444443
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
+.. . .++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++
T Consensus 132 p~~-----~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 132 PDL-----Y----CVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp TTC-----T----HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCc-----H----HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 211 0 22444555555555555555555555543 344445555555555555555555555555
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSY 311 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 311 (476)
++++.+. ...++..+|.++...|++++|+..+++++.. .+....++.++|.++...|++++|+..|
T Consensus 195 al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 195 AVTLDPN--------FLDAYINLGNVLKEARIFDRAVAAYLRALSL------SPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHCTT--------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5554321 1234555666666666666666666655442 2333456667777777777777777777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHH
Q 011858 312 QKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEE 391 (476)
Q Consensus 312 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 391 (476)
++++++ .|....++..+|.++...|++++|+.+|++++++.+. ...++..+|.++...|++++
T Consensus 261 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 261 RRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT---------HADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------cHHHHHHHHHHHHHcCCHHH
Confidence 777765 5555667777777777777777777777777776432 24566777777777777777
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccc
Q 011858 392 ALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQ 471 (476)
Q Consensus 392 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 471 (476)
|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++++. +....++..+|.++..+|+
T Consensus 324 A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 324 AVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS--------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTC-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHhHHHHHHHccC
Confidence 777777776654433 3667778888888888888888888877531 2233566777777766654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6e-34 Score=259.29 Aligned_cols=331 Identities=18% Similarity=0.219 Sum_probs=287.5
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
..+|+....+..++..+...|+ +++|+.+++++++. .|..+.++..+|.++...|++++|+..|++++
T Consensus 27 ~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 27 RQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQ-----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467888899999999999984 99999999999875 46678899999999999999999999999999
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHH
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEEL 228 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 228 (476)
.+.+. . ..++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..
T Consensus 95 ~~~p~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 95 RLKPD-----F----IDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHCTT-----C----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HcCcc-----h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 88642 2 145899999999999999999999999987 567778899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHH
Q 011858 229 CKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAV 308 (476)
Q Consensus 229 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 308 (476)
|+++++..+ ....++..+|.++...|++++|+..|++++.+ .+....++..+|.++...|++++|+
T Consensus 158 ~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 158 YLKAIETQP--------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 999998642 23556899999999999999999999999774 3445678899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011858 309 FSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 309 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (476)
..+++++.+ .|....++..+|.++...|++++|+..|++++++.+. ...++..+|.++...|+
T Consensus 224 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 224 AAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---------FPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCC
Confidence 999999998 6777889999999999999999999999999987433 25678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccc
Q 011858 389 PEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCP 468 (476)
Q Consensus 389 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (476)
+++|+.+|+++++..+... .++..+|.++...|++++|+.+|++++++. +....++..+|.++..
T Consensus 287 ~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHA-------DSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHH
Confidence 9999999999999876653 788899999999999999999999998642 2223567888999988
Q ss_pred cccccc
Q 011858 469 VVQDRR 474 (476)
Q Consensus 469 ~g~~~~ 474 (476)
.|++.+
T Consensus 352 ~g~~~~ 357 (388)
T 1w3b_A 352 QGKLQE 357 (388)
T ss_dssp TTCCHH
T ss_pred cCCHHH
Confidence 888764
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=248.95 Aligned_cols=346 Identities=14% Similarity=0.152 Sum_probs=298.6
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
..+..++.+|..+...| ++++|+.+|++++++.. ......+.++..+|.++...|++++|+.++++++.+..
T Consensus 7 ~~~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 7 ASCLELALEGERLCKSG-DCRAGVSFFEAAVQVGT-------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45778899999999999 59999999999998710 12334578899999999999999999999999999876
Q ss_pred ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc-----------
Q 011858 153 VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ----------- 221 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------- 221 (476)
.... ......++..+|.++...|++++|+.++++++++.+.. .+......++..+|.++...|+
T Consensus 79 ~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 79 TIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153 (406)
T ss_dssp HTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------C
T ss_pred hccc---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhh
Confidence 4421 22234679999999999999999999999999998875 3455677899999999999999
Q ss_pred ---------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 011858 222 ---------FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDV 292 (476)
Q Consensus 222 ---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (476)
+++|+.++++++.+.....+. ...+.++..+|.++...|++++|+.++++++.+....++......++.
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDR--AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999998887543 567788999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHH
Q 011858 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEI 372 (476)
Q Consensus 293 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 372 (476)
++|.++...|++++|+.++++++++.... ++......++..+|.++...|++++|+.++++++++.... .+....
T Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~ 306 (406)
T 3sf4_A 232 NLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---NDRIGE 306 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc---CCcHHH
Confidence 99999999999999999999999998776 4455668899999999999999999999999999998874 356677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 373 AGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
..++..+|.++...|++++|+.++++++++.+.. +.......++..+|.++...|+...+...+.+
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 372 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREV-GDKSGELTARLNLSDLQMVLGLSYSTNNSIMS 372 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 8899999999999999999999999999999888 67777888999999999999987544433333
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=5.1e-32 Score=248.68 Aligned_cols=320 Identities=17% Similarity=0.190 Sum_probs=285.6
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
+..+..+..+|..+...|++++|+.+|++++++.+ .+......++..+|.++...|++++|+.++++++++.+..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGT-----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 56677888999999999999999999999999853 2333334679999999999999999999999999998775
Q ss_pred hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC--------------
Q 011858 198 LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD-------------- 263 (476)
Q Consensus 198 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------- 263 (476)
.+.+....++..+|.++...|++++|+.++++++++.+...+. ...+.++..+|.+|...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR--LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 4567788999999999999999999999999999998887643 5678889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 011858 264 ---YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY 340 (476)
Q Consensus 264 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 340 (476)
+++|+.++++++.+....++.+....++..+|.++...|++++|+.++++++++.... .+......++..+|.+|
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHH
Confidence 9999999999999998888888889999999999999999999999999999998775 34556677999999999
Q ss_pred HHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 011858 341 HRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARM 420 (476)
Q Consensus 341 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (476)
...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 99999999999999999998864 3555668899999999999999999999999999999887 6666777899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcccCc
Q 011858 421 GVMFYMVGRYEEARSSFESAIAKLRASGERKS 452 (476)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 452 (476)
|.+|...|++++|+.+|++++++.++.++...
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 381 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXXXXXXXX 381 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 99999999999999999999999988876543
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=100.00 E-value=2.8e-31 Score=236.85 Aligned_cols=313 Identities=17% Similarity=0.215 Sum_probs=276.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
...+...|..+...|++++|+.+|+++++..+ .++.....++..+|.++...|++++|+.++++++++.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 44678899999999999999999999999853 2333334678999999999999999999999999998775 4
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC-----------------
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD----------------- 263 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 263 (476)
+.+....++..+|.++...|++++|+.++++++++.+...+. ...+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 566778899999999999999999999999999999887654 4567789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 011858 264 ---YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY 340 (476)
Q Consensus 264 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 340 (476)
+++|+.++++++.+....++.+....++..+|.++...|++++|+.++++++++.... .+......++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHH
Confidence 9999999999999998888888889999999999999999999999999999998776 44566678999999999
Q ss_pred HHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 011858 341 HRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARM 420 (476)
Q Consensus 341 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (476)
...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 99999999999999999998773 3566678899999999999999999999999999999887 6666777899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q 011858 421 GVMFYMVGRYEEARSSFESAIAKLRASG 448 (476)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 448 (476)
|.+|...|++++|..++++++++.++.+
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999887654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.4e-31 Score=247.32 Aligned_cols=317 Identities=19% Similarity=0.226 Sum_probs=263.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHH
Q 011858 64 FTDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPA 143 (476)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (476)
+......+|..+..++.+|..+...| ++++|+..|+++++. .|....++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAG-QLADALSQFHAAVDG-----------DPDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566788999999999999999999 599999999999875 355578999999999999999999999
Q ss_pred HHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHH---HH------------
Q 011858 144 LEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVG---ET------------ 208 (476)
Q Consensus 144 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~------------ 208 (476)
|+++++..+. . ..++..+|.++...|++++|+..|+++++. .|... .+
T Consensus 83 ~~~al~~~p~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~ 145 (450)
T 2y4t_A 83 LTKVIQLKMD-----F----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDEMQR 145 (450)
T ss_dssp HHHHHHHCTT-----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-----c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHHHH
Confidence 9999998642 2 256899999999999999999999999875 22222 33
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA 288 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 288 (476)
+..+|.++...|++++|+.+++++++..+. ...++..+|.+|...|++++|+.++++++... +...
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~ 211 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVW--------DAELRELRAECFIKEGEPRKAISDLKAASKLK------NDNT 211 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH------CSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCH
Confidence 445588899999999999999999986432 34568899999999999999999999987752 2336
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH------------HHHHHHcCChhHHHHHHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL------------ADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a 356 (476)
.++..+|.++...|++++|+.+|++++.+ .+.....+..+ |.++...|++++|+.+|+++
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKL--------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78899999999999999999999999987 44444444443 99999999999999999999
Q ss_pred HHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHH
Q 011858 357 LRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSS 436 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (476)
+++.+. +.......+..+|.++...|++++|+.++++++++.+... .++..+|.++...|++++|+.+
T Consensus 284 l~~~p~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 284 MKTEPS-----IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV-------NALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHCCS-----SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCCc-----chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHhcCHHHHHHH
Confidence 997533 3444467899999999999999999999999999866553 8899999999999999999999
Q ss_pred HHHHHHH
Q 011858 437 FESAIAK 443 (476)
Q Consensus 437 ~~~a~~~ 443 (476)
|++++++
T Consensus 352 ~~~al~~ 358 (450)
T 2y4t_A 352 YETAQEH 358 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999974
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=9.9e-31 Score=235.53 Aligned_cols=307 Identities=19% Similarity=0.237 Sum_probs=260.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+..++.+|..+...| ++++|+..|+++++. .|....++..+|.++...|++++|+..+++++...+.
T Consensus 2 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~-----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAG-QLADALSQFHAAVDG-----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69 (359)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh-----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3568899999999999 599999999999985 4556779999999999999999999999999988642
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch---hHHHHHHHH------------HHHHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP---RVGETCRYL------------AEAHVQ 218 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~ 218 (476)
.. .++..+|.++...|++++|+..|+++++. .| ....++..+ |.++..
T Consensus 70 -----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 70 -----FT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp -----CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cc----hHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 45899999999999999999999999876 33 444444444 899999
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
.|++++|+.+++++++..+. ...++..+|.++...|++++|+..+++++.. .+....++..+|.++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW--------DAELRELRAECFIKEGEPRKAISDLKAASKL------KSDNTEAFYKISTLY 198 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CSCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence 99999999999999987543 2456889999999999999999999998652 344567889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH------------HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASV------------FVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
...|++++|+..++++++. .+....+ ...+|.++...|++++|+..++++++..+.
T Consensus 199 ~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---- 266 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKL--------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---- 266 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----
T ss_pred HHcCCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Confidence 9999999999999999987 3332222 235588999999999999999999998643
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
+......++..+|.++...|++++|+.+|+++++..+... .++..+|.++...|++++|+.+|++++++
T Consensus 267 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 267 -VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV-------NALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444556788999999999999999999999999866553 78999999999999999999999999975
No 9
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=7.6e-30 Score=234.22 Aligned_cols=316 Identities=16% Similarity=0.178 Sum_probs=276.5
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.+..+..++.+|..+...| ++++|+.+|++++++.. +.....+.++..+|.++...|++++|+.++++++.+
T Consensus 44 ~~~~~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAG-DCRAGVAFFQAAIQAGT-------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCC-------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhcc-------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566788899999999999 59999999999999621 122345678999999999999999999999999998
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc---------
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ--------- 221 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------- 221 (476)
...... . .....++..+|.++...|++++|+.+|++++++.... .+.+....++..+|.++...|+
T Consensus 116 ~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 116 AKSMND--R-LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHTTC--H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHccC--c-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 764421 2 2234679999999999999999999999999998875 4567788899999999999999
Q ss_pred --------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011858 222 --------FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVS 293 (476)
Q Consensus 222 --------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (476)
+++|+.++++++++.....+. ...+.++..+|.++...|++++|+.++++++.+....++......++..
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDR--GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999998877553 5677889999999999999999999999999999888888888889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHH
Q 011858 294 IGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIA 373 (476)
Q Consensus 294 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 373 (476)
+|.++...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.... .+.....
T Consensus 269 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~ 343 (411)
T 4a1s_A 269 LGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL---GDRIGEA 343 (411)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CChHHHH
Confidence 9999999999999999999999998876 4455668899999999999999999999999999998764 2456678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.++..+|.++...|++++|+.+|++++++.+..
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999987665
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=100.00 E-value=5.4e-29 Score=222.04 Aligned_cols=312 Identities=15% Similarity=0.159 Sum_probs=269.1
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcccc
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVT 154 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 154 (476)
...++..|..+...| ++++|+.+++++++.. . +.....+.++..+|.++...|++++|+.++++++.+....
T Consensus 5 ~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~----~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 5 CLELALEGERLCKSG-DCRAGVSFFEAAVQVG----T---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC----C---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhC----c---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 456788999999999 5999999999999962 1 1233446789999999999999999999999999987644
Q ss_pred CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc-------------
Q 011858 155 RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ------------- 221 (476)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 221 (476)
.. ......++..+|.++...|++++|+.++++++++.+.. .+......++..+|.++...|+
T Consensus 77 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 77 GD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred cc---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 21 22234679999999999999999999999999998874 3455667899999999999999
Q ss_pred -------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 222 -------FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 222 -------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
+++|+.++++++.+.....+. .....++..+|.++...|++++|+.++++++.+....++......++..+
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 229 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDR--AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999999999998877643 46677899999999999999999999999999998888888888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
|.++...|++++|+.++++++++.... .+......++..+|.++...|++++|+.++++++.+.+.. .+......
T Consensus 230 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~ 304 (338)
T 3ro2_A 230 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGR 304 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---CCcHHHHH
Confidence 999999999999999999999998776 4455668899999999999999999999999999998764 24566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
++..+|.++...|++++|..++++++++.++.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987664
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.98 E-value=8.3e-29 Score=224.66 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=276.7
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHH--HHHHHhcCChhHHH----------
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVL--AAIYCSLGKFEEAV---------- 141 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~---------- 141 (476)
.....+.-.......+ ++++|...++++.+...... .+.+.. .++.+ .......++++.+.
T Consensus 11 ~v~~~l~~w~~~i~~~-~~~~A~~l~~~i~~~~~~~~-----~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~ 83 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRF-SIPDAEYLRREIKQELDQME-----EDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL 83 (383)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSC-----CCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCH
T ss_pred HHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhhc-----cchHHH-HHHHHHHHHHHHHHhhcCcccccccccccch
Confidence 3445566666677887 59999999999877665441 233333 22222 22333445555555
Q ss_pred -HHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Q 011858 142 -PALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM 220 (476)
Q Consensus 142 -~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 220 (476)
..+++.-.... ..........++.+|.++...|++++|+.+|++++++.+.. .+.+..+.++..+|.+|...|
T Consensus 84 ~~~~~~i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 84 SDLLLEIDKKQA----RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMK 157 (383)
T ss_dssp HHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHhcCC----CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcC
Confidence 55555433211 11111222346779999999999999999999999986653 445568899999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011858 221 QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300 (476)
Q Consensus 221 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (476)
++++|+.++++++++.+...+. ....+.++.++|.+|...|++++|+.++++++.+....++....+.++.++|.+|..
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999987652 356788999999999999999999999999999999998888999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Q 011858 301 LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEIS 380 (476)
Q Consensus 301 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 380 (476)
.|++++|+.++++++++.+.. .+.+....++.++|.++..+|++++|+.++++++++.+... + +.....+..+|
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~-~~~~~~~~~l~ 310 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---D-VIYLSEFEFLK 310 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---C-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---C-HHHHHHHHHHH
Confidence 999999999999999998876 33377899999999999999999999999999999987642 2 23333477899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 381 AIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
.++...|++ ..+++++....+. +.......++..+|.+|...|++++|..+|++++++.+++...
T Consensus 311 ~~~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~ 375 (383)
T 3ulq_A 311 SLYLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGG 375 (383)
T ss_dssp HHHTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred HHHhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999995 4555555555555 5556667889999999999999999999999999998887664
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=7.7e-30 Score=242.74 Aligned_cols=340 Identities=15% Similarity=0.132 Sum_probs=277.1
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
..+..++.+|..+...| ++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.+.+
T Consensus 23 ~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 90 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAK-NFNEAIKYYQYAIEL-----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90 (537)
T ss_dssp HHHHHHHHHHHHHHHTT-CCC-CHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh-----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 46788999999999999 599999999999986 466678999999999999999999999999999865
Q ss_pred ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHH--------------------------------------------
Q 011858 153 VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYE-------------------------------------------- 188 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------------------- 188 (476)
. + ..++..+|.++...|++++|+..|+
T Consensus 91 ~-----~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 91 D-----H----SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp T-----C----HHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred c-----h----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 2 2 2568999999999999999998763
Q ss_pred ----------------------------------------------------------HHHHHHHHHhcCC--ch----h
Q 011858 189 ----------------------------------------------------------EGLKIQIEALGET--DP----R 204 (476)
Q Consensus 189 ----------------------------------------------------------~al~~~~~~~~~~--~~----~ 204 (476)
+++..+.+.+..+ ++ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 1122222211111 11 1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
.+.++..+|.++...|++++|+.++++++++.+. ..++..+|.++...|++++|+.++++++.. .
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 306 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLADKENSQEFFKFFQKAVDL------N 306 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---------chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------C
Confidence 2457888999999999999999999999886421 455888999999999999999999998764 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
+....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.+++++++..+.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-- 376 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-- 376 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 334667899999999999999999999999998 5666788999999999999999999999999998543
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh----------hcHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV----------GRYEEAR 434 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~ 434 (476)
...++..+|.++...|++++|+.+|+++++..+.... .......+..+|.++... |++++|+
T Consensus 377 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 377 -------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK-IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp -------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS-CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred -------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh-hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 2567889999999999999999999999999988743 333334567889999999 9999999
Q ss_pred HHHHHHHHHHHHhcccCchhhhhhhccccccccccccccc
Q 011858 435 SSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 435 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
.+|++++++.+ ....++..+|.++..+|++.+
T Consensus 449 ~~~~~a~~~~p--------~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 449 KLLTKACELDP--------RSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHH
Confidence 99999997632 112567889999999888754
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=237.03 Aligned_cols=346 Identities=12% Similarity=0.047 Sum_probs=283.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+..+..+|..++..|+ +++|+..|+++++. .|+ ..++..+|.++...|++++|+..++++++..+.
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~-----------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALEL-----------KED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHH-----------CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhc-----------Ccc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 56789999999999994 99999999999996 232 668999999999999999999999999998642
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH-----------------------h------------
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA-----------------------L------------ 198 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~------------ 198 (476)
. ..++..+|.++...|++++|+..|++++...+.. +
T Consensus 72 -----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 72 -----Y----SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp -----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred -----H----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 1568999999999999999999999987653100 0
Q ss_pred ------------cC------------------------CchhHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHhc
Q 011858 199 ------------GE------------------------TDPRVGETCRYLAEAHVQ---AMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 199 ------------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 239 (476)
.. ..+.....+..+|.++.. .|++++|+.+++++++..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 00 002226677888888876 899999999999999955332
Q ss_pred C--CCCc----hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 240 S--EPAS----LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 240 ~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
. .+.. +....++..+|.++...|++++|+.++++++... +. ..++..+|.++...|++++|+.++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF------PR-VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC------CC-HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------cc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 2111 4567789999999999999999999999987642 22 78899999999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
++.. .+....++..+|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+
T Consensus 296 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 296 ALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---------NIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------CSHHHHHHHHHTTTTTCHHHHH
T ss_pred Hhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHHcCCHHHHH
Confidence 9887 5666778999999999999999999999999987543 2458899999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccc---cc
Q 011858 394 KLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCP---VV 470 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g 470 (476)
.+++++++..+... .++..+|.++...|++++|+.+|++++++.+...... ....++..+|.++.. .|
T Consensus 359 ~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 359 TLFSEAKRKFPEAP-------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp HHHHHHHHHSTTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHcccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcC
Confidence 99999998876654 7888999999999999999999999998776554321 112466778888877 77
Q ss_pred cccc
Q 011858 471 QDRR 474 (476)
Q Consensus 471 ~~~~ 474 (476)
++.+
T Consensus 430 ~~~~ 433 (514)
T 2gw1_A 430 NFIE 433 (514)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 7653
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.1e-28 Score=235.97 Aligned_cols=338 Identities=10% Similarity=0.015 Sum_probs=270.0
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh-----------------------------------------
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA----------------------------------------- 111 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~----------------------------------------- 111 (476)
..+..+..+|..+...| ++++|+..|+++++.......
T Consensus 198 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 34889999999999999 499999999999875211000
Q ss_pred ------------------hccC-CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHH
Q 011858 112 ------------------AEAE-PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGD 172 (476)
Q Consensus 112 ------------------~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 172 (476)
.... ..+....++..+|.++...|++++|+.+|++++...+... .++..++.
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~ 347 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL---------DVYPLHLA 347 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC---------TTHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH---------HHHHHHHH
Confidence 0000 1124456777888888888888888888888887654211 34778888
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 011858 173 TCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRR 252 (476)
Q Consensus 173 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 252 (476)
++...|++++|+..+++++.. .+....++..+|.+|...|++++|+.+|++++++.+. ...++.
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~ 411 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ--------FGPAWI 411 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------CHHHHH
Confidence 888888888888888888754 4566788999999999999999999999999886322 245688
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 011858 253 LMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASV 332 (476)
Q Consensus 253 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 332 (476)
.++.+|...|++++|++.|++++.. .+....++..+|.+|...|++++|+.+|+++++. .+....+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ 477 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARL------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLL 477 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHH
Confidence 9999999999999999999998653 2334567889999999999999999999999987 5666788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCch
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 412 (476)
+..+|.++...|++++|+.+|++++++.++. +.++.....++..+|.++...|++++|+..|+++++..+...
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----- 550 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA----- 550 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----
Confidence 9999999999999999999999999987653 223333478999999999999999999999999998865543
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccc
Q 011858 413 IAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLC 467 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (476)
.++..+|.+|...|++++|..+|++++++.++. ..++..|+.+|.
T Consensus 551 --~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--------~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 --NVHTAIALVYLHKKIPGLAITHLHESLAISPNE--------IMASDLLKRALE 595 (597)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHh
Confidence 789999999999999999999999999763221 244556666654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.5e-29 Score=221.97 Aligned_cols=304 Identities=13% Similarity=0.096 Sum_probs=252.7
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
...++....++.+|..++..| ++++|+..++++++. .|....++..++.++...|++++|+.++++++
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~-----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 83 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEK-----------DPFHASCLPVHIGTLVELNKANELFYLSHKLV 83 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc-----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555668899999999999 599999999999875 34445678889999999999999999999999
Q ss_pred hhccccCCCchhHHHHHhHhhHHHHHHHcC-ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHH
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGDTCSMLG-QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEE 227 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 227 (476)
...+.. + .++..+|.++...| ++++|+.+|+++++. .+....++..+|.++...|++++|+.
T Consensus 84 ~~~~~~-----~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 84 DLYPSN-----P----VSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHCTTS-----T----HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCcCC-----H----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHH
Confidence 976532 1 45899999999999 999999999999976 55667789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHH
Q 011858 228 LCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEA 307 (476)
Q Consensus 228 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 307 (476)
.+++++++.+... .++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|
T Consensus 147 ~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 147 AYFTAAQLMKGCH--------LPMLYIGLEYGLTNNSKLAERFFSQALSI------APEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHHHHTTTCS--------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccccH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcccHHHH
Confidence 9999998865422 33677999999999999999999998663 344567899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc
Q 011858 308 VFSYQKALTVFKSSKGDNH-PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV 386 (476)
Q Consensus 308 ~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (476)
+.++++++++......... +....++..+|.++...|++++|+.++++++++.+. ...++..+|.++...
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---------NASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---------chHHHHHHHHHHHHh
Confidence 9999999998765532221 445679999999999999999999999999998543 256889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-HHhhcHH
Q 011858 387 DEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF-YMVGRYE 431 (476)
Q Consensus 387 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 431 (476)
|++++|+.+|++++++.+... .++..++.++ ...|+.+
T Consensus 284 g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDT-------FSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCH-------HHHHHHHHHHHTTTTC--
T ss_pred ccHHHHHHHHHHHHccCCCch-------HHHHHHHHHHHHHhCchh
Confidence 999999999999998766553 7888899988 4566543
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-29 Score=235.05 Aligned_cols=348 Identities=16% Similarity=0.097 Sum_probs=285.1
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
....+..+|.++...| ++++|+..++++++. .|....++..+|.++...|++++|+..|++++...+.
T Consensus 38 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVG-DLKKVVEMSTKALEL-----------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH-----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred cHHHHHhHHHHHHHHh-hHHHHHHHHHHHhcc-----------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3778999999999999 599999999999986 4666789999999999999999999999999877641
Q ss_pred cCCCchh----------------------------------------------------------------------HHH
Q 011858 154 TRGADHA----------------------------------------------------------------------LAK 163 (476)
Q Consensus 154 ~~~~~~~----------------------------------------------------------------------~~~ 163 (476)
....... ...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
T 2gw1_A 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE 185 (514)
T ss_dssp CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcH
Confidence 1100000 000
Q ss_pred HHhHhhHHHHHHH---cCChhhHHHHHHHHHHHHHHHh--cCC----chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 164 FSGYMQLGDTCSM---LGQVDRSIGCYEEGLKIQIEAL--GET----DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 164 ~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
...+..+|.++.. .|++++|+.+|+++++..+... ..+ .+....++..+|.++...|++++|+.+++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2456777887776 8999999999999999654432 111 266788999999999999999999999999998
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
..+ . ..++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+.+++++
T Consensus 266 ~~~--------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 266 LFP--------R-VNSYIYMALIMADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HCC--------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred hCc--------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 642 1 566889999999999999999999998653 3344567899999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 315 LTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALK 394 (476)
Q Consensus 315 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (476)
+++ .+....++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.
T Consensus 331 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 331 KEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE---------APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT---------CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 987 5556779999999999999999999999999988543 24678999999999999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccc
Q 011858 395 LLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM---VGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQ 471 (476)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 471 (476)
+|++++...+... .......++..+|.++.. .|++++|+.+|++++++.+ ....++..+|.++..+|+
T Consensus 394 ~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 394 QYDLAIELENKLD-GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--------RSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHTSS-SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHhcC
Confidence 9999999988873 222223588899999999 9999999999999997531 112567788889888888
Q ss_pred ccc
Q 011858 472 DRR 474 (476)
Q Consensus 472 ~~~ 474 (476)
+.+
T Consensus 465 ~~~ 467 (514)
T 2gw1_A 465 IDE 467 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=240.48 Aligned_cols=359 Identities=15% Similarity=0.077 Sum_probs=265.8
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
+++..+..+..+|.++...|+ +++|+++|++|+++.+..... ..++..+.++.++|.+|..+|++++|+.++++++.
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~--~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHAD--QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGG--GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCcc--ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455567788999999999995 999999999999998877431 13567788999999999999999999999999999
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHc--CChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---hccHHH
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSML--GQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ---AMQFDK 224 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~ 224 (476)
+.+...+..+... ..++..+|.++... +++++|+.+|++++++ +|....++..++.++.. .++.++
T Consensus 123 i~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 123 VCEKFSSPYRIES-PELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHSCCSSCCCC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HhHhcccccchhh-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 8876544433221 24577777776654 5799999999999998 55666777777777554 566788
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALIC----EAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (476)
|+..+++++++.+.. ..++..+|..+ ...|++++|..++++++.. .+....++.++|.+|..
T Consensus 194 al~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRR 259 (472)
T ss_dssp THHHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHH
Confidence 999999999875331 23345555544 4557888999999988663 34456678999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc-------------------CChhHHHHHHHHHHHHHc
Q 011858 301 LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT-------------------GKLRESKSYCENALRIYA 361 (476)
Q Consensus 301 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~a~~~~~ 361 (476)
.|++++|+..+++++++ .|....++..+|.+|... +.+++|+..+++++.+.+
T Consensus 260 ~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp TTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 99999999999999998 788889999999988653 235677888888887743
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-HHhhcHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF-YMVGRYEEARSSFESA 440 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a 440 (476)
. ...++..+|.++...|++++|+.+|++++++.+.. .....++..+|.+. ...|++++|+.+|+++
T Consensus 332 ~---------~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 332 N---------LFRVCSILASLHALADQYEEAEYYFQKEFSKELTP----VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp T---------TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred c---------hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 24568899999999999999999999998763322 22234556667654 5789999999999999
Q ss_pred HHHHHHhcc----------------cCchhhhhhhcccccccccccccccC
Q 011858 441 IAKLRASGE----------------RKSAFFRSCVEPDGIGLCPVVQDRRG 475 (476)
Q Consensus 441 ~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~~ 475 (476)
+++.+.... ...+..+.++..||.+|..+|++.++
T Consensus 399 l~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 875321100 01122346788999999999988764
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=9.8e-29 Score=229.67 Aligned_cols=356 Identities=13% Similarity=0.087 Sum_probs=274.6
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
..+|.....++.+|.++...| ++++|+..++++++. .|....++..+|.++...|++++|+.+|++++
T Consensus 54 ~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 121 (450)
T 2y4t_A 54 DGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQL-----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc-----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 446778999999999999999 599999999999986 35557789999999999999999999999999
Q ss_pred hhccccCCCchhHH------HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccH
Q 011858 149 SVPDVTRGADHALA------KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQF 222 (476)
Q Consensus 149 ~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 222 (476)
...+.......... ....+..+|.++...|++++|+..|+++++. .|....++..+|.+|...|++
T Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCG
T ss_pred hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCH
Confidence 87642110000000 0112456688899999999999999999986 556678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHH---------HHH
Q 011858 223 DKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAI---------DVS 293 (476)
Q Consensus 223 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~---------~~~ 293 (476)
++|+.+|+++++..+. ...++..+|.++...|++++|+.++++++.. .++....... ...
T Consensus 194 ~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 194 RKAISDLKAASKLKND--------NTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp GGGHHHHHHHHHHHCS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999987533 2456899999999999999999999998753 2333322222 244
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHH
Q 011858 294 IGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIA 373 (476)
Q Consensus 294 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 373 (476)
+|.++...|++++|+.+|++++++.. .+.......+..+|.++...|++++|+.++++++++.+. ..
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------~~ 329 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEP----SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---------NV 329 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCC----SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------cH
Confidence 59999999999999999999998721 111122568999999999999999999999999998433 26
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH------------Hhh-----cHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY------------MVG-----RYEEARSS 436 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g-----~~~~A~~~ 436 (476)
.++..+|.++...|++++|+.+|++++++.+... .++..++.+.. ..| +.+++.+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ-------QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-------HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH-------HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 7899999999999999999999999998766653 66677775433 334 45667777
Q ss_pred HHH-HHHHHHHhcccCc--hhhhhhhcccccccccccccccC
Q 011858 437 FES-AIAKLRASGERKS--AFFRSCVEPDGIGLCPVVQDRRG 475 (476)
Q Consensus 437 ~~~-a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~ 475 (476)
|++ ++...+....... ......+..++.+|..+||..+.
T Consensus 403 y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 403 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 876 5543333222111 12335678899999999998763
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=7.9e-29 Score=235.76 Aligned_cols=327 Identities=16% Similarity=0.139 Sum_probs=268.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011858 67 ASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEK 146 (476)
Q Consensus 67 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (476)
....+|+....+..+|.++...| ++++|+..+++++++ .|....++..+|.++...|++++|+..|+
T Consensus 51 al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~- 117 (537)
T 3fp2_A 51 AIELDPNEPVFYSNISACYISTG-DLEKVIEFTTKALEI-----------KPDHSKALLRRASANESLGNFTDAMFDLS- 117 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred HHhhCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-----------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 34456888999999999999999 599999999999986 46667889999999999999999998884
Q ss_pred hhhhccccC-----------------------------------------------------------------------
Q 011858 147 AISVPDVTR----------------------------------------------------------------------- 155 (476)
Q Consensus 147 al~~~~~~~----------------------------------------------------------------------- 155 (476)
++...+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 442221100
Q ss_pred ----------------------------------CCchh---HHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 156 ----------------------------------GADHA---LAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 156 ----------------------------------~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
.+.+. .....++..+|.++...|++++|+..|+++++.
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----- 272 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL----- 272 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----
Confidence 00100 011245888999999999999999999999987
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
.|. ..++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+..+++++...
T Consensus 273 ---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 273 ---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE--------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp ---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445 788999999999999999999999999987543 24558999999999999999999999997742
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
+....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.+|+++++
T Consensus 341 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 341 ------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp ------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233467889999999999999999999999998 566678999999999999999999999999999
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhh
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYESV----------DEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (476)
+.+... ........+..+|.++... |++++|+.+|+++++..+... .++..+|.+|...|
T Consensus 407 ~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 407 LEEVQE---KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE-------QAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHCS---SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTT
T ss_pred cCCcch---hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhc
Confidence 886532 2222334567888999999 999999999999999877654 78899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011858 429 RYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 429 ~~~~A~~~~~~a~~~~~~~ 447 (476)
++++|+.+|++++++.+..
T Consensus 477 ~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 477 KIDEAIELFEDSAILARTM 495 (537)
T ss_dssp CHHHHHHHHHHHHHHC--C
T ss_pred cHHHHHHHHHHHHHhCCCc
Confidence 9999999999999876554
No 20
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-28 Score=237.60 Aligned_cols=350 Identities=12% Similarity=0.071 Sum_probs=268.2
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHH-------------HHH---------HhhhccCCC----------------
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKS-------------FER---------CAAAEAEPS---------------- 117 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~-------------~~~---------~~~~~~~~~---------------- 117 (476)
..++.++..+...| ++++|+..+++++.. +.+ ..+......
T Consensus 118 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 56677888888888 488888888776211 000 000000011
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCC----------------------------------------
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGA---------------------------------------- 157 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------------------- 157 (476)
+....++..+|.+|...|++++|+..|+++++..+.....
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 3357899999999999999999999999998765421100
Q ss_pred -----------------------chhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011858 158 -----------------------DHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAE 214 (476)
Q Consensus 158 -----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 214 (476)
..+ ....++..++.++...|++++|+..|+++++. .+....++..++.
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLA 347 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGG-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHH
Confidence 000 11245677788888888888888888887765 3344556777788
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 215 AHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
++...|++++|+..++++++..+ ....++..+|.+|...|++++|+++|++++.. .+....++..+
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l 413 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRHP--------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTM------DPQFGPAWIGF 413 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence 88888888888888888775422 23456888999999999999999999998763 23345688899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
+.+|...|++++|+..|+++++. .+....++..+|.+|...|++++|+.+|+++++..+. ...
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~ 476 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---------DPL 476 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---------CHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------ChH
Confidence 99999999999999999999876 4556788999999999999999999999999987433 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchh
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAF 454 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 454 (476)
++..+|.++...|++++|+++|+++++..++....+.....++..+|.++...|++++|+.+|++++++. + .
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p---~ 548 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----T---N 548 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----S---C
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C---C
Confidence 7999999999999999999999999999887633444447899999999999999999999999999763 1 1
Q ss_pred hhhhhccccccccccccccc
Q 011858 455 FRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~ 474 (476)
...++..+|.+|...|++++
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHH
T ss_pred ChHHHHHHHHHHHHhCCHHH
Confidence 12577888999999888764
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.9e-29 Score=221.20 Aligned_cols=298 Identities=13% Similarity=0.070 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
..++..+|..++..|++++|+.+|++++...+... .++..++.++...|++++|+..++++++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 85 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA---------SCLPVHIGTLVELNKANELFYLSHKLVDL------- 85 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------TTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh---------hhHHHHHHHHHHhhhHHHHHHHHHHHHHh-------
Confidence 44688899999999999999999999998865322 34778899999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAM-QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
.|....++..+|.++...| ++++|+.++++++++.+. ...++..+|.++...|++++|+..+++++...
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 155 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT--------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM- 155 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT--------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence 5666788999999999999 999999999999876533 23458899999999999999999999987753
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
+.....+..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++++
T Consensus 156 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 156 -----KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp -----TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223445677999999999999999999999987 6677889999999999999999999999999999
Q ss_pred HcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 360 YARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
.+........+....++..+|.++...|++++|+.+|++++++.+... .++..+|.++...|++++|+.+|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-------STYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-------HHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-------HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 876532222244467899999999999999999999999999877664 7889999999999999999999999
Q ss_pred HHHHHHHhcccCchhhhhhhccccccc-cccccc
Q 011858 440 AIAKLRASGERKSAFFRSCVEPDGIGL-CPVVQD 472 (476)
Q Consensus 440 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 472 (476)
++++.+ ....++..++.++ ..+|+.
T Consensus 296 al~~~p--------~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 296 ALGLRR--------DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTCS--------CCHHHHHHHHHHHHTTTTC-
T ss_pred HHccCC--------CchHHHHHHHHHHHHHhCch
Confidence 986421 1124566777766 455553
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.6e-29 Score=228.45 Aligned_cols=319 Identities=14% Similarity=0.103 Sum_probs=249.1
Q ss_pred HHHHcCCCcchHHH-HHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHH
Q 011858 84 DTIASGEGPSKALD-YAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALA 162 (476)
Q Consensus 84 ~~~~~g~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 162 (476)
++...| ++++|+. .|++++.+.. .........++.+|.++...|++++|+.+|++++...+. .
T Consensus 34 ~~~~~~-~~~~a~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~--- 97 (368)
T 1fch_A 34 AHPWLS-DYDDLTSATYDKGYQFEE-------ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-----H--- 97 (368)
T ss_dssp -------------CHHHHCCCCCCS-------SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-----C---
T ss_pred hhHHHH-HHHHHHhhhhhHHHhcCC-------CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---
Confidence 455566 4888888 8888776421 112223456889999999999999999999999988642 2
Q ss_pred HHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Q 011858 163 KFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 163 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 242 (476)
..++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+..+++++.+.+.....
T Consensus 98 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 168 (368)
T 1fch_A 98 -MEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168 (368)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 245899999999999999999999999987 56667899999999999999999999999999876554332
Q ss_pred Cch--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 243 ASL--------EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 243 ~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
... .....+..++.++ ..|++++|+.++++++... +.. ....++..+|.++...|++++|+.+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~---p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 169 VTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD---PTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp CC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS---TTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC---cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 100 0011122466666 9999999999999987642 111 14678899999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 315 LTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALK 394 (476)
Q Consensus 315 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (476)
+.+ .+....++..+|.++...|++++|+.+|++++++.+. ...++..+|.++...|++++|+.
T Consensus 244 l~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 244 LSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---------YIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHH
Confidence 998 6677889999999999999999999999999998433 36789999999999999999999
Q ss_pred HHHHHHHHHHhccC----CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 395 LLQRAMKLLEDKPG----QQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 395 ~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
+|++++.+.+...+ .......++..+|.++..+|++++|..+++++++.+++..+
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 99999999887621 12233578999999999999999999999999998876543
No 23
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.97 E-value=8.2e-27 Score=210.99 Aligned_cols=338 Identities=17% Similarity=0.100 Sum_probs=261.4
Q ss_pred HHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHH--HHhcCChhHHH---------HHHHHhhhhcccc
Q 011858 86 IASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAI--YCSLGKFEEAV---------PALEKAISVPDVT 154 (476)
Q Consensus 86 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~~~~al~~~~~~ 154 (476)
...+ ++++|...++++.+.+.... .+.... .++.+-.. ....+.+..+. ..+++.-....
T Consensus 23 i~~~-~~~~A~~l~~~i~~~~~~~~-----~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-- 93 (378)
T 3q15_A 23 IRQF-SVPDAEILKAEVEQDIQQME-----EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK-- 93 (378)
T ss_dssp HHTT-CHHHHHHHHHHHHHHGGGBC-----CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH--
T ss_pred HHHc-CHHHHHHHHHHHHHHHHHhc-----ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC--
Confidence 5666 59999999998877654431 223322 33333222 22334444444 55554332221
Q ss_pred CCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 155 RGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
..+.......++..|..+...|++++|+.+|++++++.... .+.+..+.++..+|.+|...|++++|+.+++++++
T Consensus 94 --~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 94 --KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11122223457889999999999999999999999987654 44567889999999999999999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 235 IHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA 314 (476)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 314 (476)
+.+...+. ....+.++.++|.+|...|++++|++++++++.+....++....+.++.++|.+|...|++++|+.+++++
T Consensus 170 ~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 170 IYQNHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHTSTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99887653 23578889999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 315 LTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALK 394 (476)
Q Consensus 315 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (476)
+++.+.. .++....++.++|.++..+|++++|+.++++++++..... + +.....+..++.++...++. .
T Consensus 249 l~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~-~~~~~~~~~l~~ly~~~~~~----~ 317 (378)
T 3q15_A 249 AKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS---H-KFYKELFLFLQAVYKETVDE----R 317 (378)
T ss_dssp HHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC---C-SCHHHHHHHHHHHHSSSCCH----H
T ss_pred HHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---C-HHHHHHHHHHHHHHhCCCcH----H
Confidence 9988775 2456689999999999999999999999999999987642 1 22334567888999888883 3
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 395 LLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
.+.+++...... +.......++..+|.+|...|++++|..+|++++++.++...
T Consensus 318 ~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 318 KIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 334444444443 445556678889999999999999999999999999887755
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=5.4e-28 Score=217.60 Aligned_cols=306 Identities=13% Similarity=0.060 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
+..+..+|..+...|++++|+..|++++...+. .+ .++..+|.++...|++++|+..++++++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 567899999999999999999999999998652 22 46899999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---hcCCCC----chHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHR---AHSEPA----SLEESADRRLMALICEAKGDYEAALEHLVL 273 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 273 (476)
.|....++..+|.++...|++++|+..+++++++.+ ...... .......+..+|.++...|++++|+..+++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 556668899999999999999999999999987644 211100 000011223448999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 274 ASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
++.. .+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|++++|+..+
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8764 2334578899999999999999999999999987 6777889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCChHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 011858 354 ENALRIYARPVPGTTAEEIAG---------GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF 424 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (476)
+++++..+. ...... ....+|.++...|++++|+..++++++..+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999998543 222211 23456899999999999999999999876543 233446678899999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccccccccc
Q 011858 425 YMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 425 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
...|++++|+.+|++++++. +....++..+|.++..+|++.+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999862 1113577888999998888764
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=3.5e-28 Score=219.34 Aligned_cols=289 Identities=16% Similarity=0.084 Sum_probs=232.9
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
.....++.+|..+...|++++|+.+|++++...+. . ..++..+|.++...|++++|+..|++++++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 128 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-----D----AEAWQFLGITQAENENEQAAIVALQRCLEL----- 128 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 34556899999999999999999999999998652 2 256899999999999999999999999987
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASL--EESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.|....++..+|.++...|++++|+.++++++++.+........ .....+..+|.++...|++++|+.++++++.
T Consensus 129 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 129 ---QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56667899999999999999999999999999988775543211 1234456779999999999999999999977
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 277 AMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
.. +. .....++..+|.++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|+++
T Consensus 206 ~~---p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 206 QN---GD-MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HS---CS-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hC---cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52 11 114568899999999999999999999999998 6777889999999999999999999999999
Q ss_pred HHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC-----CchHHHHHHHHHHHHHHhhcHH
Q 011858 357 LRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ-----QSTIAGIEARMGVMFYMVGRYE 431 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~ 431 (476)
+++.+. ...++..+|.++...|++++|+.+|++++++.++..+. ......++..++.++..+|+.+
T Consensus 274 l~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 274 LEIQPG---------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHCTT---------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HhcCCC---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 998543 27789999999999999999999999999999886331 1123478889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011858 432 EARSSFESAIAKLR 445 (476)
Q Consensus 432 ~A~~~~~~a~~~~~ 445 (476)
.+..+.++.++.++
T Consensus 345 ~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 345 LFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHTTCCGGGT
T ss_pred HHHHHHHhhHHHHH
Confidence 99888777655443
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.9e-28 Score=221.45 Aligned_cols=300 Identities=16% Similarity=0.131 Sum_probs=231.8
Q ss_pred HHHHhcCChhHHHH-HHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 011858 129 AIYCSLGKFEEAVP-ALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGE 207 (476)
Q Consensus 129 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 207 (476)
.++...|++++|+. .|++++.+.+..... ....++.+|.++...|++++|+.+|+++++. .|....
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 99 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLR-----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME 99 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTT-----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCccc-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 36667899999999 999999876532211 1244789999999999999999999999986 566778
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh-
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE- 286 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~- 286 (476)
++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++|+..+++++...........
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD--------NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 9999999999999999999999999987533 3456899999999999999999999998764321111000
Q ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 287 ---------VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS--VASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 287 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
....+..++.++ ..|++++|+.+++++++. .+. ...++..+|.++...|++++|+.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011122566666 899999999999999998 455 688999999999999999999999999
Q ss_pred HHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHH
Q 011858 356 ALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
++.+.+. ...++..+|.++...|++++|+.+|++++++.+... .++..+|.++...|++++|+.
T Consensus 243 al~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 243 ALSVRPN---------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI-------RSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCcC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHCCCHHHHHH
Confidence 9998433 267899999999999999999999999999866553 788999999999999999999
Q ss_pred HHHHHHHHHHHhcccC---chhhhhhhccccccccccccccc
Q 011858 436 SFESAIAKLRASGERK---SAFFRSCVEPDGIGLCPVVQDRR 474 (476)
Q Consensus 436 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 474 (476)
+|++++++.+...+.. ......++..+|.++..+|++..
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999877663221 12234678889999999998765
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=7.7e-28 Score=225.02 Aligned_cols=331 Identities=14% Similarity=0.030 Sum_probs=238.5
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhc--CChhHHHHHHHHh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSL--GKFEEAVPALEKA 147 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a 147 (476)
.+|..+..+..+|.+|...|+ +++|+.++++++++.+.... ...+..+.++..+|.++... +++++|+.+|+++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~-~~~A~~~~~ka~~i~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka 164 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGR-LSDVQIYVDKVKHVCEKFSS---PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCC---SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhHhccc---ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 467788899999999999995 99999999999999887744 23456677888888877665 4799999999999
Q ss_pred hhhccccCCCchhHHHHHhHhhHHHHH---HHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----hc
Q 011858 148 ISVPDVTRGADHALAKFSGYMQLGDTC---SMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ----AM 220 (476)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 220 (476)
+++.+. ++ .++..+|.++ ...++.++|+..|++++++ +|....++..+|..+.. .|
T Consensus 165 l~~~p~-----~~----~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 165 LEKKPK-----NP----EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp HHHSTT-----CH----HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC----
T ss_pred HHhCCC-----CH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhh
Confidence 998752 22 3356666664 4567889999999999987 45556667777765544 56
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011858 221 QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300 (476)
Q Consensus 221 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (476)
++++|+.++++++.+.+. ...++..+|.+|...|++++|+..+++++.. .|....++.++|.+|..
T Consensus 228 ~~~~a~~~~~~al~~~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPG--------VTDVLRSAAKFYRRKDEPDKAIELLKKALEY------IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp --CHHHHHHHHHHHHCSS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh------CCChHHHHHHHHHHHHH
Confidence 788999999999876432 3455889999999999999999999999763 34456678888888764
Q ss_pred c-------------------CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 301 L-------------------CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 301 ~-------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
. +.+++|+.++++++++ .+....++..+|.++...|++++|+.+|++++++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 3 3356777777777777 667777899999999999999999999999998632
Q ss_pred CCCCCCChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhcc-----------------CCCchHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAI-YESVDEPEEALKLLQRAMKLLEDKP-----------------GQQSTIAGIEARMGVM 423 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~l~~~ 423 (476)
.+.....++..+|.+ +...|++++|+.+|++++++.+... ...+..+.++..+|.+
T Consensus 366 ------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 366 ------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333444566677765 4578999999999999987643221 0112223678899999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 424 FYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 424 ~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
|...|++++|+++|++|+++.+..+.
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHCC------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999987655543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.4e-27 Score=215.36 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=230.4
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
..+..++.+|..+...| ++++|+..|+++++. .|....++..+|.++...|++++|+.+|++++.+.+
T Consensus 63 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 130 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEG-DLPVTILFMEAAILQ-----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130 (365)
T ss_dssp TTCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHh-----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45667999999999999 599999999999986 455678999999999999999999999999999864
Q ss_pred ccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHhccHHHHHHHHH
Q 011858 153 VTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP--RVGETCRYLAEAHVQAMQFDKAEELCK 230 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (476)
.. ..++..+|.++...|++++|+.+|++++++.+........ .....+..+|.++...|++++|+.+++
T Consensus 131 ~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 131 NN---------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp TC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH
T ss_pred CC---------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 22 2568999999999999999999999999984442110000 123445567999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 231 KTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFS 310 (476)
Q Consensus 231 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 310 (476)
+++++.+... ...++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+
T Consensus 202 ~al~~~p~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 202 EAAHQNGDMI------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp HHHHHSCSSC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998754321 2456889999999999999999999999774 234466899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC----hHHHHHHHHHHHHHHHHc
Q 011858 311 YQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT----AEEIAGGLTEISAIYESV 386 (476)
Q Consensus 311 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~ 386 (476)
|++++++ .|....++.++|.+|...|++++|+.+|++++++.++.. +.. ......++..++.++..+
T Consensus 270 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 270 YTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR-NQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHH
T ss_pred HHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC-CCcccchhhhHHHHHHHHHHHHHHc
Confidence 9999998 677789999999999999999999999999999987743 111 112357889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 011858 387 DEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 387 g~~~~A~~~~~~a~~~~~~~ 406 (476)
|+.+.+.....+.+......
T Consensus 341 g~~~~a~~~~~~~l~~~~~~ 360 (365)
T 4eqf_A 341 DQPELFQAANLGDLDVLLRA 360 (365)
T ss_dssp TCHHHHHHHHTTCCGGGTTT
T ss_pred CcHHHHHHHHHhhHHHHHHh
Confidence 99999998887766554443
No 29
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=2.7e-26 Score=208.12 Aligned_cols=336 Identities=9% Similarity=-0.028 Sum_probs=260.1
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhh--HHHHHHHcCChhhHH-----------
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQ--LGDTCSMLGQVDRSI----------- 184 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~----------- 184 (476)
++......+-...+...+++++|..+++++.............. .++. ........+++..+.
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~----~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~ 84 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLH----LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHH----HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHH----HHHHHHHHHHHHHHhhcCcccccccccccchh
Confidence 34455566666777889999999999999977765433222221 1222 222333344444444
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCH
Q 011858 185 GCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDY 264 (476)
Q Consensus 185 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 264 (476)
..+++.-...... +.......++.+|.++...|++++|+.++++++++.....+. ...+.++..+|.+|...|++
T Consensus 85 ~~~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 85 DLLLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR--IEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHHcCCH
Confidence 5555433221110 011223356679999999999999999999999987776543 46788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc
Q 011858 265 EAALEHLVLASMAMIANGQ-DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT 343 (476)
Q Consensus 265 ~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 343 (476)
++|+.++++++.+....++ .+..+.++.++|.+|...|++++|+.++++++++.++. ++.+....++.++|.+|..+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHC
Confidence 9999999999999998877 67888999999999999999999999999999998887 55677788999999999999
Q ss_pred CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 011858 344 GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVM 423 (476)
Q Consensus 344 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (476)
|++++|+.++++++++.+... +.+....++..+|.++..+|++++|+.++++++++.+.. ++...... +..+|.+
T Consensus 238 g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~-~~~l~~~ 312 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESN---ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSE-FEFLKSL 312 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHH
Confidence 999999999999999987642 335568899999999999999999999999999999876 44443333 6679999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccccccccC
Q 011858 424 FYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPVVQDRRG 475 (476)
Q Consensus 424 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 475 (476)
+...|++ ..+++++..+++.+. ......++..+|.+|..+|++.++
T Consensus 313 ~~~~~~~----~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A 358 (383)
T 3ulq_A 313 YLSGPDE----EAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKA 358 (383)
T ss_dssp HTSSCCH----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCcH----HHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999996 566666666666643 345557888999999999998653
No 30
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.96 E-value=3.3e-25 Score=200.35 Aligned_cols=315 Identities=12% Similarity=-0.000 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
....++..+|.++...|++++|+.++++++...+. ........++..+|.++...|++++|+..+++++.+.+..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPP----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-
Confidence 34667888999999999999999999999987642 2222334568899999999999999999999999998774
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
.+......++..+|.++...|++++|+.++++++.+.+..++..++....++.++|.++...|++++|..++++++.+.
T Consensus 87 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 87 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2334456778999999999999999999999999999987765445677888999999999999999999999999877
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHHHHHHcCChhHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASV--FVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
...+... ...++..+|.++...|++++|..++++++.+.... . .+..... ...++.++...|++++|..+++++
T Consensus 166 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 166 SSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6554433 55788999999999999999999999999886543 1 1111222 224556688999999999999998
Q ss_pred HHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHH
Q 011858 357 LRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSS 436 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (476)
+..... ........+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|..+
T Consensus 242 ~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 242 AKPEFA-----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp CCCCCT-----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCC-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 764321 111223357889999999999999999999999998876 55555567888999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 011858 437 FESAIAKLRASGE 449 (476)
Q Consensus 437 ~~~a~~~~~~~~~ 449 (476)
+++++.+....+.
T Consensus 316 l~~al~~~~~~g~ 328 (373)
T 1hz4_A 316 LLDALKLANRTGF 328 (373)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHhccccH
Confidence 9999999887654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=9.9e-27 Score=206.50 Aligned_cols=291 Identities=15% Similarity=0.132 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
.....++.+|..+...|++++|+.+|++++...+. . ..++..+|.++...|++++|+.+++++++.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 84 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----R----EEAWRSLGLTQAENEKDGLAIIALNHARML----- 84 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 34456889999999999999999999999987642 2 245889999999999999999999999987
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH-----HHHHHHHH-HH-HHHHhCCHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE-----ESADRRLM-AL-ICEAKGDYEAALEHL 271 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~l-a~-~~~~~g~~~~A~~~~ 271 (476)
.|....++..+|.++...|++++|+..++++++..+......... .......+ +. ++...|++++|+.++
T Consensus 85 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 85 ---DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred ---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 556678899999999999999999999999998765544331000 00001112 44 588899999999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHH
Q 011858 272 VLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKS 351 (476)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 351 (476)
++++... +....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.
T Consensus 162 ~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 162 HAALEMN------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp HHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9987642 334678899999999999999999999999988 66678899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc-----hHHHHHHHHHHHHHH
Q 011858 352 YCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS-----TIAGIEARMGVMFYM 426 (476)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~ 426 (476)
+++++++..+. ...++..+|.++...|++++|+.+|++++.+.+....... ....++..+|.++..
T Consensus 228 ~~~~a~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 228 AYNRALDINPG---------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999998543 2568899999999999999999999999999887422111 146788999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcc
Q 011858 427 VGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 427 ~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
.|++++|...++++++.+++..+
T Consensus 299 ~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 299 MNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp TTCHHHHHHHTTCCSHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999998877654
No 32
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=6.6e-26 Score=199.68 Aligned_cols=285 Identities=19% Similarity=0.212 Sum_probs=229.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHH
Q 011858 65 TDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPAL 144 (476)
Q Consensus 65 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (476)
.....++|..+..+..+|..+...| ++++|+.++++++++...... ...+....++..+|.++...|++++|+.++
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 92 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSG---HDHPDVATMLNILALVYRDQNKYKDAANLL 92 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHC---SSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455678899999999999999999 599999999999999888753 246888999999999999999999999999
Q ss_pred HHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHH
Q 011858 145 EKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDK 224 (476)
Q Consensus 145 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 224 (476)
++++.+.....+.+.+. ...++..+|.++...|++++|+.++++++++.....+.+++....++..+|.++...|++++
T Consensus 93 ~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 93 NDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 99999876543333332 23679999999999999999999999999999888778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CC------hhHHHHHHHHH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG---QD------NEVAAIDVSIG 295 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~------~~~~~~~~~l~ 295 (476)
|+.++++++++.........+....++..+|.++...|++++|+.++++++....... .. ......+..++
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 9999999999988876665677888999999999999999999999999998764321 11 12233444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 296 NIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
..+...+.+.+|...+.++... ++....++..+|.+|...|++++|+.+|++++++.++
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CchhhHHHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 5556666677777777777665 7888999999999999999999999999999998653
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=198.17 Aligned_cols=275 Identities=16% Similarity=0.173 Sum_probs=223.9
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
+.++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.++...|++++|+.++++++.+........
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999999998876667888999999999999999999999999999999988775444
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN--GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 321 (476)
.+....++..+|.++...|++++|+.++++++.+.... ++.+....++..+|.++...|++++|+.++++++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999988766 6778889999999999999999999999999999999988
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC------CCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV------PGTTAEEIAGGLTEISAIYESVDEPEEALKL 395 (476)
Q Consensus 322 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (476)
.+.+.+....++..+|.++...|++++|+.++++++++..... ...........+..++..+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 7778889999999999999999999999999999998754310 0111122334445555556666777777777
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 396 LQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
++++....+ ....++..+|.+|...|++++|+.+|++++++.+
T Consensus 267 ~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 267 YKACKVDSP-------TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -------CH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HhhcCCCCc-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 777665433 3458899999999999999999999999998754
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=5.2e-26 Score=201.83 Aligned_cols=283 Identities=12% Similarity=0.095 Sum_probs=234.3
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
....++.+|..+...| ++++|+..++++++. .|....++..+|.++...|++++|+.++++++...+.
T Consensus 20 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLA-NLAEAALAFEAVCQA-----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp GSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 4567899999999999 599999999999885 3556778999999999999999999999999998642
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHH--------------HH-HHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYL--------------AE-AHVQ 218 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~ 218 (476)
. ..++..+|.++...|++++|+..+++++... +.....+..+ +. ++..
T Consensus 88 -----~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 88 -----D----IAVHAALAVSHTNEHNANAALASLRAWLLSQ--------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp -----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------TTTTTC--------------------CCTTS
T ss_pred -----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 2 2458999999999999999999999999763 2222223333 55 5889
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
.|++++|+.+++++++..+. ...++..+|.++...|++++|+.++++++.. .+....++..+|.++
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPN--------DAQLHASLGVLYNLSNNYDSAAANLRRAVEL------RPDDAQLWNKLGATL 216 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHH
Confidence 99999999999999987533 2456889999999999999999999998764 233466889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCCh----HHHHH
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA----EEIAG 374 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~ 374 (476)
...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++.+.+... .... .....
T Consensus 217 ~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT-TPTGEASREATRS 287 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC-C-----CCTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc-cccccchhhcCHH
Confidence 9999999999999999998 666788999999999999999999999999999976631 1111 11577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG 408 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 408 (476)
++..+|.++...|++++|...++++++..++..+
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 8999999999999999999999999999887644
No 35
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.95 E-value=2.3e-25 Score=193.27 Aligned_cols=269 Identities=16% Similarity=0.159 Sum_probs=221.6
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 011858 174 CSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRL 253 (476)
Q Consensus 174 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 253 (476)
....|++++|+.+|++++++..+..+.+++....++..+|.++...|++++|+.++++++++.....+...+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 35679999999999999999999888888999999999999999999999999999999999988765556788899999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIAN--GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
+|.++...|++++|+.++++++.+.... .+++....++.++|.++...|++++|+.++++++++.+...+.+.+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999987765 44678899999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCc
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQS 411 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 411 (476)
++..+|.++..+|++++|+.++++++++......+.........+..++..+...+....+. .+.++............
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999986542112223333456667777776666555444 35556666555544667
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
....++..+|.+|...|++++|+.+|++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999864
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.5e-26 Score=206.26 Aligned_cols=258 Identities=10% Similarity=0.004 Sum_probs=216.6
Q ss_pred CCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCC-hhHHHHHHHH
Q 011858 68 SLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGK-FEEAVPALEK 146 (476)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~ 146 (476)
..-+|+...++..+|..+...| ++++|+..+++++++ .|....+++.+|.++...|+ +++|+.+|++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g-~~~~Al~~~~~al~l-----------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDE-RSERAFKLTRDAIEL-----------NAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHh-----------CccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 3456778899999999999999 499999999999996 57778899999999999997 9999999999
Q ss_pred hhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHH
Q 011858 147 AISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAE 226 (476)
Q Consensus 147 al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 226 (476)
++.+.+.. ..+|+++|.++..+|++++|+..|++++++ +|....+++++|.++..+|++++|+
T Consensus 158 al~l~P~~---------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 158 IIEEQPKN---------YQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHCTTC---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHH
Confidence 99997632 256999999999999999999999999998 7788899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011858 227 ELCKKTLEIHRAHSEPASLEESADRRLMALICEA-KGDYEAA-----LEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS 300 (476)
Q Consensus 227 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (476)
.+|++++++.+. ...+|+++|.++.. .|.+++| +.++++++.+ .+....+++++|.++..
T Consensus 221 ~~~~~al~l~P~--------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l------~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 221 QYVDQLLKEDVR--------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHc
Confidence 999999998644 34568999999999 5555777 5888888763 34556789999999999
Q ss_pred cC--CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC--------C-hhHHHHHHHHH-HHHHcCCCCCCC
Q 011858 301 LC--RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG--------K-LRESKSYCENA-LRIYARPVPGTT 368 (476)
Q Consensus 301 ~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~ 368 (476)
.| ++++|++.++++ +. .+....++..+|.+|..+| + +++|+.+|+++ +++.
T Consensus 287 ~g~~~~~~a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-------- 349 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-------- 349 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC--------
T ss_pred cCccchHHHHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC--------
Confidence 88 689998888765 32 6677889999999999985 2 58899999988 6652
Q ss_pred hHHHHHHHHHHHHHHHHc
Q 011858 369 AEEIAGGLTEISAIYESV 386 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~ 386 (476)
+.....|..++..+..+
T Consensus 350 -P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 350 -TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp -GGGHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHH
Confidence 33466777777766543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-24 Score=184.45 Aligned_cols=254 Identities=16% Similarity=0.126 Sum_probs=214.9
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
+..+..+..+|.++...|++++|+.+|++++... .. . .++..+|.++...|++++|+.++++++++.+..
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~-----~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 71 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD-----I----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC-----T----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc-----H----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 3457789999999999999999999999999885 11 1 458999999999999999999999999987653
Q ss_pred hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 198 LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
..+.+....++..+|.++...|++++|+.++++++.+.+. +.++...|++++|+..+++++.
T Consensus 72 -~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~a~~~~~~~~~- 133 (258)
T 3uq3_A 72 -RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------ADILTKLRNAEKELKKAEAEAY- 133 (258)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------hHHHHHHhHHHHHHHHHHHHHH-
Confidence 1223344789999999999999999999999999986422 4567788899999999998866
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
..+....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 134 -----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56777889999999999999999999999999998 66678899999999999999999999999999
Q ss_pred HHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 011858 358 RIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGV 422 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (476)
+..+. ...++..+|.++...|++++|+.+|++++++.++. +..+....++..++.
T Consensus 201 ~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EKDPN---------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEV-NNGSSAREIDQLYYK 255 (258)
T ss_dssp HHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHH
T ss_pred HhCHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh-cCCCchHHHHHHHHH
Confidence 98533 26789999999999999999999999999998655 222222345444444
No 38
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.95 E-value=4.1e-24 Score=193.25 Aligned_cols=266 Identities=17% Similarity=0.100 Sum_probs=223.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
...++.+|..+...|++++|+.+|++++.+.....+ ......++..+|.++...|++++|+.++++++++.+.. +.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~ 176 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PL 176 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CC
Confidence 446788999999999999999999999999865432 22334779999999999999999999999999998764 11
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA 280 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 280 (476)
..+..+.++..+|.++...|++++|+.++++++++.+..++. ...+.++.++|.+|..+|++++|+.++++++.+...
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND--RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 134678899999999999999999999999999999887654 467788999999999999999999999999998887
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC---hhHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK---LRESKSYCENAL 357 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~ 357 (476)
.+++.. ..++.++|.++...|++++|+.++++++++.... + ++.....+..++.++...++ +.+|+.++++
T Consensus 255 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-- 328 (378)
T 3q15_A 255 KVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR--S-HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-- 328 (378)
T ss_dssp HCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT--C-CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH--
T ss_pred hCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--
Confidence 766555 8999999999999999999999999999997654 2 34445567888889988888 5555555544
Q ss_pred HHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 358 RIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
....+.....+..+|.+|...|++++|+.+|++++++..+.
T Consensus 329 --------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 329 --------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 22455667888999999999999999999999999987664
No 39
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.94 E-value=8.4e-24 Score=191.15 Aligned_cols=313 Identities=13% Similarity=0.061 Sum_probs=250.2
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccc
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDV 153 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 153 (476)
.+..+..+|..+...| ++++|+.++++++..... ++......++..+|.++...|++++|+.++++++.+.+.
T Consensus 13 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 13 HAEFNALRAQVAINDG-NPDEAERLAKLALEELPP------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCC------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 3567788899999999 599999999999986411 122335668899999999999999999999999998875
Q ss_pred cCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011858 154 TRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTL 233 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 233 (476)
.. .......++..+|.++...|++++|+.++++++++.+...+..++....++..+|.++...|++++|..++++++
T Consensus 86 ~~---~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 86 HD---VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp TT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cC---cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 32 222334668899999999999999999999999998875333346778889999999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 234 EIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDN-EVAAIDVSIGNIYLSLCRFDEAVFSYQ 312 (476)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 312 (476)
.+.+..+.. ....++..+|.++...|++++|..++++++.+....+... ........++.++...|++++|..+++
T Consensus 163 ~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 239 (373)
T 1hz4_A 163 EVLSSYQPQ---QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239 (373)
T ss_dssp HHTTTSCGG---GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhccCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 988765443 2456788999999999999999999999988765544432 122222345667889999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHH
Q 011858 313 KALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEA 392 (476)
Q Consensus 313 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 392 (476)
+++.... .........+..++.++...|++++|...+++++...... ........++..+|.++...|++++|
T Consensus 240 ~a~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 240 HTAKPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL---RLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HSCCCCC----TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hCCCCCC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---cchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 9875421 1112234467889999999999999999999999988763 13445567889999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 011858 393 LKLLQRAMKLLEDK 406 (476)
Q Consensus 393 ~~~~~~a~~~~~~~ 406 (476)
...+++++.+....
T Consensus 313 ~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 313 QRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998765
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-24 Score=185.42 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=209.5
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
...+..+|.++...|++++|+.+|+++++.. ....++..+|.++...|++++|+.++++++++.+.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~- 74 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD- 74 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc-
Confidence 3568999999999999999999999999872 345789999999999999999999999999998876432
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
......++..+|.++...|++++|+.++++++.+. .. +.++...|++++|+..+++++..
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~----------~~~~~~~~~~~~a~~~~~~~~~~------ 134 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH----RT----------ADILTKLRNAEKELKKAEAEAYV------ 134 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC----------HHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----ch----------hHHHHHHhHHHHHHHHHHHHHHc------
Confidence 23447789999999999999999999999987742 11 45678889999999999999887
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+....++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.+++++++..
T Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 135 --NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999999999999999998543 25789999999999999999999999999987
Q ss_pred HhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 404 EDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
+... .++..+|.++...|++++|+.+|++++++.++.+.
T Consensus 204 ~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 242 (258)
T 3uq3_A 204 PNFV-------RAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242 (258)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC
Confidence 6653 78899999999999999999999999999876654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=7e-25 Score=189.13 Aligned_cols=260 Identities=12% Similarity=0.052 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCC
Q 011858 122 MSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGET 201 (476)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 201 (476)
..++..|.+++..|++++|+..|+++++..+... .++..+|.++...|++++|+..++++++. ..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP---------YIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS---------TTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCc
Confidence 4678899999999999999999999999875322 35899999999999999999999999873 122
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
......++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+.++++++..
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 137 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---- 137 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS----
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc----
Confidence 33447789999999999999999999999999975442 345899999999999999999999988653
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHH
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK---LRESKSYCENALR 358 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~ 358 (476)
.+....++..+|......+++++|+.++++++++ .|....++..+|.++...|+ +++|+..++++++
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 4556778899995555566999999999999998 66778899999999999999 9999999999999
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY 425 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (476)
+..... .........++..+|.+|...|++++|+.+|++++++.+++. .+...++.+..
T Consensus 208 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~a~~~l~~~~~ 266 (272)
T 3u4t_A 208 VCAPGG-AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK-------KAIDGLKMKLE 266 (272)
T ss_dssp HHGGGG-GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHC----
T ss_pred HHhccc-ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH-------HHHHHhhhhhc
Confidence 986531 111334568899999999999999999999999999988774 55555554443
No 42
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.93 E-value=6.1e-24 Score=184.27 Aligned_cols=268 Identities=20% Similarity=0.213 Sum_probs=218.5
Q ss_pred HHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 011858 131 YCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCR 210 (476)
Q Consensus 131 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 210 (476)
....|++++|+.+|++++++.....+.+++.. ..++..+|.++...|++++|+.++++++++.....+.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34679999999999999999876655554433 46799999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCChhHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN--GQDNEVA 288 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~ 288 (476)
.+|.++...|++++|+.++++++.+.....+..++....++.++|.++...|++++|+.++++++.+.... ++.+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999999887776667889999999999999999999999999999987654 4477888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS-KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
.++..+|.++...|++++|+.++++++++.... .+...+.....+..++..+...+....+.. +..+....... ..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~ 246 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC--KV 246 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC--CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc--CC
Confidence 999999999999999999999999999986553 222344555667777777776666555544 55555555554 44
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
..+....++..+|.+|..+|++++|+.+|++++++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66778899999999999999999999999999864
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=6.7e-25 Score=195.62 Aligned_cols=256 Identities=11% Similarity=-0.009 Sum_probs=216.4
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCC-hhhHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ-VDRSIGCYEEGLKIQ 194 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 194 (476)
..|....++..+|.++...|++++|+..|++++.+.+.. ..+++.+|.++..+|+ +++|+.+|++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-
Confidence 468888999999999999999999999999999997632 2569999999999997 99999999999998
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011858 195 IEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLA 274 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 274 (476)
+|....+++++|.++..+|++++|+..|++++++.+. ...+|.++|.++..+|++++|+.+++++
T Consensus 162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--------~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------NYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7788899999999999999999999999999997644 3456899999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC--Ch
Q 011858 275 SMAMIANGQDNEVAAIDVSIGNIYLS-LCRFDEA-----VFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG--KL 346 (476)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~ 346 (476)
+.+ ++....+++++|.++.. .|.+++| +.+|++++.+ .|....+|.+++.++...| ++
T Consensus 227 l~l------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 227 LKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHh------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccch
Confidence 873 45567889999999999 5655777 5999999998 7888999999999999988 68
Q ss_pred hHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HHHHHhccCCCchHHHH
Q 011858 347 RESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD--------E-PEEALKLLQRA-MKLLEDKPGQQSTIAGI 416 (476)
Q Consensus 347 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~~~~~ 416 (476)
++|++.++++ +.. +....++..+|.+|..+| + +++|+.+|+++ +++.+.. ...
T Consensus 293 ~~a~~~~~~~-~~~---------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-------~~~ 355 (382)
T 2h6f_A 293 PNLLNQLLDL-QPS---------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR-------KEY 355 (382)
T ss_dssp HHHHHHHHHH-TTT---------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-------HHH
T ss_pred HHHHHHHHHh-ccC---------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh-------HHH
Confidence 9999888775 321 223678889999999875 2 58899999988 6665554 367
Q ss_pred HHHHHHHHHHh
Q 011858 417 EARMGVMFYMV 427 (476)
Q Consensus 417 ~~~l~~~~~~~ 427 (476)
|..++..+..+
T Consensus 356 w~~~~~~l~~~ 366 (382)
T 2h6f_A 356 WRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 44
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=7e-23 Score=191.79 Aligned_cols=308 Identities=14% Similarity=0.116 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHh----cCChhHHHHH
Q 011858 72 PDLGPFLLKLARDTIA----SGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCS----LGKFEEAVPA 143 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 143 (476)
+..+..++.+|..+.. .+ ++++|+.+|+++.+. ..+.+++.+|.+|.. .+++++|+.+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ-------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4467789999999988 77 599999999999763 235588899999998 8999999999
Q ss_pred HHHhhhhccccCCCchhHHHHHhHhhHHHHHHH----cCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-
Q 011858 144 LEKAISVPDVTRGADHALAKFSGYMQLGDTCSM----LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ- 218 (476)
Q Consensus 144 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 218 (476)
|+++.+.. + ..+++.+|.+|.. .+++++|+.+|+++.+. ....++..+|.+|..
T Consensus 102 ~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 102 YKKAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEG 160 (490)
T ss_dssp HHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcC
Confidence 99997642 1 1457889999888 78999999999988763 235678888888887
Q ss_pred ---hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 011858 219 ---AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA----KGDYEAALEHLVLASMAMIANGQDNEVAAID 291 (476)
Q Consensus 219 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 291 (476)
.+++++|+.+|+++.+. + ...++..+|.+|.. .+++++|+.+|+++... + ...++
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~----~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~ 222 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQ----G------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----G----DELGQ 222 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC----C------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----C----CHHHH
Confidence 77888888888888753 1 13456777877777 77888888887776541 1 12345
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCCC--------------------------------CchHHHHHHH
Q 011858 292 VSIGNIYLS----LCRFDEAVFSYQKALTVFKSSKGDN--------------------------------HPSVASVFVR 335 (476)
Q Consensus 292 ~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------~~~~~~~~~~ 335 (476)
..+|.+|.. .+++++|+.+|+++++. ++ ......++..
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~ 296 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYY 296 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555554 55555555555555432 00 0011234444
Q ss_pred HHHHHHHc-----CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcc
Q 011858 336 LADLYHRT-----GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD---EPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 336 la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~ 407 (476)
+|.+|... +++++|+.+|+++.+.. ...++..+|.+|...| ++++|+.+|+++++. ..
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~- 362 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQG-----------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE- 362 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC-
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC-
Confidence 44444444 44444444444444320 1344555555555544 455555555555543 11
Q ss_pred CCCchHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccc
Q 011858 408 GQQSTIAGIEARMGVMFYM----VGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCP 468 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (476)
..+++.+|.+|.. .+++++|+.+|+++++. +. ..++.+||.+|..
T Consensus 363 ------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~------~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 363 ------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GL------SAAQVQLGEIYYY 411 (490)
T ss_dssp ------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHHc
Confidence 2556666666666 66666666666666641 11 2455667776665
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=6.4e-23 Score=192.02 Aligned_cols=298 Identities=14% Similarity=0.107 Sum_probs=217.7
Q ss_pred CchHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHh----cCChhHHHHHH
Q 011858 73 DLGPFLLKLARDTIA----SGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCS----LGKFEEAVPAL 144 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 144 (476)
..+.+++.+|..+.. .+ ++++|+.+|+++.+. ....+++.+|.+|.. .+++++|+.+|
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 138 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK-------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWF 138 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 356788999999998 77 599999999998763 234577889998888 78899999999
Q ss_pred HHhhhhccccCCCchhHHHHHhHhhHHHHHHH----cCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH--
Q 011858 145 EKAISVPDVTRGADHALAKFSGYMQLGDTCSM----LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-- 218 (476)
Q Consensus 145 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-- 218 (476)
+++.+.. + ..++..+|.+|.. .+++++|+.+|+++++. ....++..+|.+|..
T Consensus 139 ~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 139 RLAAEQG-------R----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----------GNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTS
T ss_pred HHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHhcCC
Confidence 9887652 1 1457788888877 77888888888887753 124566677777776
Q ss_pred --hccHHHHHHHHHHHHHHHHh-------------cCCCCc-------------hHHHHHHHHHHHHHHH----hCCHHH
Q 011858 219 --AMQFDKAEELCKKTLEIHRA-------------HSEPAS-------------LEESADRRLMALICEA----KGDYEA 266 (476)
Q Consensus 219 --~g~~~~A~~~~~~al~~~~~-------------~~~~~~-------------~~~~~~~~~la~~~~~----~g~~~~ 266 (476)
.+++++|+.+|+++.+.... .+.... .....++..+|.+|.. .+++++
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 67777777777766542100 000000 0112344555555555 556666
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Q 011858 267 ALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSL-----CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH 341 (476)
Q Consensus 267 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 341 (476)
|+.+|+++.+ .....++..+|.+|... +++++|+.+|+++.+. ....++.++|.+|.
T Consensus 278 A~~~~~~a~~--------~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 278 ALEWYRKSAE--------QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----------GDATAQANLGAIYF 339 (490)
T ss_dssp HHHHHHHHHT--------TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Confidence 6666655532 12244667788888877 7888888888887764 22578899999999
Q ss_pred HcC---ChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhccCCCchHH
Q 011858 342 RTG---KLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKLLEDKPGQQSTIA 414 (476)
Q Consensus 342 ~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 414 (476)
..| ++++|+.+|+++++.. ...+++.+|.+|.. .+++++|+.+|+++++.. . .
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-------~ 399 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKG-----------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--L-------S 399 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-------H
T ss_pred hCCCcccHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C-------H
Confidence 877 8999999999998751 26789999999999 899999999999998741 1 3
Q ss_pred HHHHHHHHHHHH----hhcHHHHHHHHHHHHHH
Q 011858 415 GIEARMGVMFYM----VGRYEEARSSFESAIAK 443 (476)
Q Consensus 415 ~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 443 (476)
.++..+|.+|.. .+++++|..+|+++++.
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 788999999999 89999999999999864
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=5.2e-24 Score=183.65 Aligned_cols=244 Identities=13% Similarity=0.080 Sum_probs=206.7
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..++.+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+.+++++++ .+ .+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~-- 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NAT-- 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--Cch--
Confidence 34789999999999999999999999986 445566899999999999999999999999988 22 222
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
.....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++++
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence 134666899999999999999999999999774 2334568899999999999999999999999887
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE---PEEALKLLQRAMK 401 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~ 401 (476)
.+....++..+|......+++++|+.+|++++++.+. ...++..+|.++...|+ +++|+..|+++++
T Consensus 138 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 138 -TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN---------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 6777889999995555567999999999999998543 26788899999999999 9999999999999
Q ss_pred HHHhccCC-CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 402 LLEDKPGQ-QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 402 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
+....+.. ......++..+|.+|...|++++|+.+|++++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 98665322 23355789999999999999999999999999764
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3.9e-24 Score=176.90 Aligned_cols=198 Identities=22% Similarity=0.215 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
.+.+++.+|.++...|++++|+..|+++++..+.. + .++..+|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~------ 68 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD-----P----EALYWLARTQLKLGLVNPALENGKTLVAR------ 68 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34578999999999999999999999999987532 2 56899999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQA-----------MQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAAL 268 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 268 (476)
+|....++..+|.++... |++++|+..+++++++.+. ...++..+|.++...|++++|+
T Consensus 69 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------YAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHHcCChHHHH
Confidence 677888999999999999 9999999999999998543 3456889999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH
Q 011858 269 EHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE 348 (476)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 348 (476)
..|++++.+. ....++.++|.++...|++++|+..|++++++ .|....++..+|.++...|++++
T Consensus 139 ~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 139 ASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred HHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence 9999998753 23567899999999999999999999999998 78888999999999999999999
Q ss_pred HHHHHHHHH
Q 011858 349 SKSYCENAL 357 (476)
Q Consensus 349 A~~~~~~a~ 357 (476)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999998764
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3.1e-24 Score=177.48 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 011858 205 VGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQD 284 (476)
Q Consensus 205 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 284 (476)
...++..+|.++...|++++|+..|++++++.+. ...++..+|.++...|++++|+..+++++.+ .
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~ 69 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--------DPEALYWLARTQLKLGLVNPALENGKTLVAR------T 69 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence 3467899999999999999999999999876433 3556899999999999999999999999774 3
Q ss_pred hhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 285 NEVAAIDVSIGNIYLSL-----------CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
|....++.++|.++... |++++|+..|++++++ .|....++.++|.++...|++++|+..|
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 55577899999999999 9999999999999999 7888999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHH
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEA 433 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 433 (476)
++++++. . ...++..+|.++...|++++|+..|++++++.+... .++..+|.++...|++++|
T Consensus 142 ~~al~~~-~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~-------~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 142 KQALALE-D---------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL-------DLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHC-C---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHTC-------
T ss_pred HHHHhcc-c---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHccCHHHH
Confidence 9999985 2 267889999999999999999999999999987764 8889999999999999999
Q ss_pred HHHHHHHH
Q 011858 434 RSSFESAI 441 (476)
Q Consensus 434 ~~~~~~a~ 441 (476)
+.+|+++-
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99998865
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1e-21 Score=169.64 Aligned_cols=280 Identities=9% Similarity=0.068 Sum_probs=216.7
Q ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhH-HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhH
Q 011858 83 RDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDY-AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHAL 161 (476)
Q Consensus 83 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 161 (476)
...+..| ++.+|+..+++... ..|+. .+....++.+|...|++++|+..++.. ..+
T Consensus 7 ~~~~~~g-~y~~ai~~~~~~~~-----------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----------~~~- 63 (291)
T 3mkr_A 7 KNAFYIG-SYQQCINEAQRVKP-----------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----------SAP- 63 (291)
T ss_dssp HHHHHTT-CHHHHHHHHHHSCC-----------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----------SCH-
T ss_pred HHHHHHH-HHHHHHHHHHhccc-----------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----------CCh-
Confidence 4556677 58888877766433 24444 457788899999999999999866431 112
Q ss_pred HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 162 AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
...++..++..+...|++++|+..+++++.. ..+|....++..+|.++...|++++|+..+++
T Consensus 64 -~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------- 126 (291)
T 3mkr_A 64 -ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------- 126 (291)
T ss_dssp -HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------
T ss_pred -hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------
Confidence 1356888999999999999999999988763 11466778899999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 242 PASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 242 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 321 (476)
+ ....++..+|.++..+|++++|++.+++++.. .++.. .......+..++...|++++|+..|+++++.
T Consensus 127 ~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---- 195 (291)
T 3mkr_A 127 G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK---- 195 (291)
T ss_dssp C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----
T ss_pred C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----
Confidence 1 12346888999999999999999999998764 22221 1111112224444569999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 011858 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEE-ALKLLQRAM 400 (476)
Q Consensus 322 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~ 400 (476)
.|....+++++|.++..+|++++|+..|++++++.+. ...++.++|.++...|++++ +..++++++
T Consensus 196 ----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~---------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 196 ----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG---------HPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp ----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6777899999999999999999999999999998543 36789999999999999976 578999999
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHH
Q 011858 401 KLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSF 437 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (476)
++.|+.+ .+..+..+.+.|+++..-|
T Consensus 263 ~~~P~~~-----------~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 263 DAHRSHP-----------FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHCTTCH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCh-----------HHHHHHHHHHHHHHHHHHc
Confidence 9988874 3345666777777776654
No 50
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.91 E-value=3.7e-22 Score=173.19 Aligned_cols=226 Identities=12% Similarity=0.073 Sum_probs=181.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA 288 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 288 (476)
+...|.+|...|++++|+.+|++++++.+..++. ...+.++.++|.+|..+|++++|+.+|++++.+....++....+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE--DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3334667888999999999999999999887653 45678899999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 289 AIDVSIGNIYLSL-CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 289 ~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
.++.++|.+|... |++++|+.+|++++++.... ++......++.++|.++..+|++++|+.+|++++++.... ..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 193 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--RL 193 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--TT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--Cc
Confidence 9999999999996 99999999999999997754 2223346789999999999999999999999999987653 11
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH--HhhcHHHHHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY--MVGRYEEARSSFESAIA 442 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~ 442 (476)
.......++.++|.++..+|++++|+.+|++++++.+..... .....+..++..+. ..+++++|+..|++++.
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 122345688999999999999999999999999988876322 12345556676664 45678888888876653
No 51
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.90 E-value=4.7e-22 Score=172.53 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=182.5
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..+...|.+|...|++++|+.+|++++++.... ++.+..+.++.++|.+|..+|++++|+.+|++++++.+..++.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-- 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-- 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH--
Confidence 345555778889999999999999999998774 3445668899999999999999999999999999999887654
Q ss_pred hHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 245 LEESADRRLMALICEAK-GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
...+.++.++|.+|... |++++|+.+|++++.+....+.......++.++|.++..+|++++|+.+|++++++....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-- 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--
Confidence 35577899999999996 999999999999999988777666667889999999999999999999999999874322
Q ss_pred CCC-chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 011858 324 DNH-PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYE--SVDEPEEALKLLQRAM 400 (476)
Q Consensus 324 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~ 400 (476)
... .....++.++|.++..+|++++|+.+|++++++.+... .......+..++..+. ..+++++|+..|++++
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA----DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 111 13345789999999999999999999999998765531 1122345666676665 4567888888887765
Q ss_pred HHHH
Q 011858 401 KLLE 404 (476)
Q Consensus 401 ~~~~ 404 (476)
.+.+
T Consensus 268 ~l~~ 271 (292)
T 1qqe_A 268 RLDK 271 (292)
T ss_dssp CCCH
T ss_pred ccHH
Confidence 5443
No 52
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.90 E-value=2.1e-21 Score=169.71 Aligned_cols=249 Identities=13% Similarity=0.102 Sum_probs=200.6
Q ss_pred hcCChhHHHHHHHHhhhhcccc-CC-CchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 011858 133 SLGKFEEAVPALEKAISVPDVT-RG-ADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCR 210 (476)
Q Consensus 133 ~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 210 (476)
..|++++|..+++++.+..+.. .. .......+..+...|.+|...|++++|+.+|.+++++.... .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 4577888888888887765421 11 12233345667888899999999999999999999998775 34456778999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAI 290 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 290 (476)
++|.+|..+|++++|+.+|++++++....++. ...+.++.++|.+|.. |++++|+.+|++++.+....++......+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~--~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTP--DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 99999999999999999999999999876654 3567889999999999 99999999999999999888777777899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
+.++|.+|..+|++++|+.+|++++.+.... ...+....++..+|.++..+|++++|+.+|++++ +.+.. ...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~----~~~ 230 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF----SGS 230 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS----TTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC----CCC
Confidence 9999999999999999999999999998765 2233456688999999999999999999999999 65442 122
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 371 EIAGGLTEISAIYESVDEPEEALK 394 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~ 394 (476)
.....+..++..+ ..|+.+....
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 3345566666665 5677655544
No 53
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.90 E-value=1.3e-21 Score=170.96 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=202.5
Q ss_pred HcCChhhHHHHHHHHHHHHHH-Hh--cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 011858 176 MLGQVDRSIGCYEEGLKIQIE-AL--GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRR 252 (476)
Q Consensus 176 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 252 (476)
..|++.+|..+++++.+.... .+ +.+.......+...|.+|...|++++|+.+|.+++++.+..++. ...+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL--FHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHH
Confidence 356788888888888876543 12 23334455677778899999999999999999999999887654 46678899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 011858 253 LMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASV 332 (476)
Q Consensus 253 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 332 (476)
++|.+|..+|++++|+.+|++++.+....++....+.++.++|.+|.. |++++|+.+|++++++.... ++......+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~ 157 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHH
Confidence 999999999999999999999999998888877888999999999999 99999999999999998765 333455789
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCch
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 412 (476)
+.++|.+|..+|++++|+.+|++++.+.+... .......++..+|.++..+|++++|+.+|++++ +.+... ...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~--~~~ 231 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEME---NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS--GSE 231 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST--TSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC--CCH
Confidence 99999999999999999999999999987642 344556789999999999999999999999999 766542 233
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHH
Q 011858 413 IAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
....+..++..+ ..|+.+.+..
T Consensus 232 e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 232 DCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHH
Confidence 345566667665 5677655554
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=7.5e-21 Score=163.75 Aligned_cols=227 Identities=17% Similarity=0.196 Sum_probs=195.7
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCS----LGKFEEAVPALEK 146 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 146 (476)
+|..+..++.+|..+...| ++++|+.+|+++++. ....+++.+|.++.. .+++++|+.+|++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~-------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 67 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK-DFTQAKKYFEKACDL-------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 67 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 3566789999999999999 599999999999871 224578999999999 9999999999999
Q ss_pred hhhhccccCCCchhHHHHHhHhhHHHHHHH----cCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH----
Q 011858 147 AISVPDVTRGADHALAKFSGYMQLGDTCSM----LGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ---- 218 (476)
Q Consensus 147 al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---- 218 (476)
+++.. + ..++..+|.++.. .+++++|+.+|+++++. ....++..+|.+|..
T Consensus 68 a~~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 68 ACDLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSS
T ss_pred HHHCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCc
Confidence 98873 1 2568999999999 99999999999999875 245789999999999
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA----KGDYEAALEHLVLASMAMIANGQDNEVAAIDVSI 294 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 294 (476)
.+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+|+++++. ....++..+
T Consensus 127 ~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~l 188 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNA 188 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHH
Confidence 999999999999998742 23458899999999 99999999999998763 125678999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHH
Q 011858 295 GNIYLS----LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR----TGKLRESKSYCENALRIY 360 (476)
Q Consensus 295 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~ 360 (476)
|.+|.. .+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|+++++..
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999 99999999999999986 22 6789999999999 999999999999999873
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=7.4e-21 Score=163.79 Aligned_cols=228 Identities=18% Similarity=0.223 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHH----cCChhhHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSM----LGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~ 193 (476)
+..+.+++.+|.++...|++++|+.+|+++++.. +. .++..+|.++.. .+++++|+.+|+++++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-------EN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-------CH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 3456789999999999999999999999998821 11 458999999999 99999999999999875
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----hCCHH
Q 011858 194 QIEALGETDPRVGETCRYLAEAHVQ----AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA----KGDYE 265 (476)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 265 (476)
....++..+|.+|.. .+++++|+.+|+++++.. ...++..+|.+|.. .++++
T Consensus 72 ----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 72 ----------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ----------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------CccHHHHHHHHHHcCCCcccCHH
Confidence 146789999999999 999999999999998751 24568999999999 99999
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Q 011858 266 AALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS----LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH 341 (476)
Q Consensus 266 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 341 (476)
+|+.+|++++.. + ...++.++|.+|.. .+++++|+.+|+++++. . ...++..+|.+|.
T Consensus 132 ~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 132 KAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------K--DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH
Confidence 999999999762 1 35678899999999 99999999999999875 1 2578899999999
Q ss_pred H----cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHh
Q 011858 342 R----TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 342 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~ 405 (476)
. .+++++|+.+|+++++.. + ..++..+|.+|.. .+++++|+.+|+++++..+.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~--------~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE--------N---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT--------C---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCCccHHHHHHHHHHHHhCC--------C---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 9 999999999999999861 1 5688999999999 99999999999999987544
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=2.9e-21 Score=166.78 Aligned_cols=256 Identities=13% Similarity=0.028 Sum_probs=203.5
Q ss_pred HHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHH
Q 011858 129 AIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGET 208 (476)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 208 (476)
...+..|+|.+|+..+++.....+. ........++.+|...|++++|+..++.. .+....+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHH
Confidence 4456799999999999887655432 11245678899999999999999866441 3346688
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA 288 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 288 (476)
+..++..+...|++++|++.+++.+... ..+ ....++..+|.++...|++++|++.+++ +...
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~---~~P---~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~ 130 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRS---VDV---TNTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSL 130 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSC---CCC---SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcc---cCC---CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCH
Confidence 8999999999999999999999886531 112 2345588999999999999999999985 2345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--HHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLA--DLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.++..+|.++..+|++++|+..++++++. .|.........+ .++...|++++|+..|+++++..+.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~---- 198 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP---- 198 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC----
Confidence 67889999999999999999999999988 333332222222 3334458999999999999998433
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHH-HHHHHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEE-ARSSFESAIAKL 444 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~ 444 (476)
...+++.+|.++..+|++++|+..|+++++..+... .++.++|.++...|++.+ +..++++++++.
T Consensus 199 -----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-------~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 199 -----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-------ETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 367899999999999999999999999999988775 889999999999999976 568889988654
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=2.3e-21 Score=167.27 Aligned_cols=259 Identities=13% Similarity=0.044 Sum_probs=199.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHH
Q 011858 127 LAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVG 206 (476)
Q Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 206 (476)
++......|++++|+..|+++++..+. ..+ ....++..+|.++...|++++|+.+|+++++. .|...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 77 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRAL----TDD-ERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP 77 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCC----CHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccc----cCc-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence 344455678999999999999987421 111 22367999999999999999999999999987 55667
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE 286 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 286 (476)
.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+.++++++... +...
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~- 145 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP- 145 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence 889999999999999999999999999875432 3558899999999999999999999987642 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.....+ .++...|++++|+..+++++... +.... ...++.++...++.++|+..+++++.....
T Consensus 146 --~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---- 209 (275)
T 1xnf_A 146 --FRSLWL-YLAEQKLDEKQAKEVLKQHFEKS--------DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTS---- 209 (275)
T ss_dssp --HHHHHH-HHHHHHHCHHHHHHHHHHHHHHS--------CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred --HHHHHH-HHHHHhcCHHHHHHHHHHHHhcC--------CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence 222222 34467799999999999998872 22222 234777888889999999999998765432
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSF 437 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (476)
..+....++..+|.++...|++++|+.+|++++.+.+... ...+.++...|++++|++.+
T Consensus 210 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 -LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF----------VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC----------HHHHHHHHHHHHHHHC----
T ss_pred -ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH----------HHHHHHHHHHHHHHhhHHHH
Confidence 1233478899999999999999999999999998754432 23477888999999999887
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1.6e-20 Score=159.66 Aligned_cols=206 Identities=18% Similarity=0.168 Sum_probs=181.7
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
..++..+|.++...|++++|+.+|+++++. .+....++..+|.++...|++++|+.+++++++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR----- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----
Confidence 467999999999999999999999999987 4556788999999999999999999999999987432
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
...++..+|.++...|++++|++++++++. .+..+....++..+|.++...|++++|+.+++++++.
T Consensus 104 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 170 (252)
T 2ho1_A 104 ---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------ 170 (252)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 245688999999999999999999998865 3356677889999999999999999999999999988
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+....++..+|.++...|++++|+.+++++++..+. ....+..++.++...|++++|..+++++++..
T Consensus 171 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 171 --NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ---------NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 5666889999999999999999999999999876432 25678899999999999999999999999887
Q ss_pred Hhc
Q 011858 404 EDK 406 (476)
Q Consensus 404 ~~~ 406 (476)
+..
T Consensus 240 p~~ 242 (252)
T 2ho1_A 240 PGS 242 (252)
T ss_dssp TTS
T ss_pred CCC
Confidence 665
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=8.9e-22 Score=166.54 Aligned_cols=218 Identities=14% Similarity=0.090 Sum_probs=167.5
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA 243 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 243 (476)
...++.+|.++...|++++|+.+|+++++. .+....++..+|.++...|++++|+.+++++++..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----- 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS----- 89 (243)
T ss_dssp -------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----
Confidence 456899999999999999999999999875 5566788999999999999999999999999987432
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
...++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.+++++++.
T Consensus 90 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 154 (243)
T 2q7f_A 90 ---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL------ 154 (243)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------
T ss_pred ---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------
Confidence 34568899999999999999999999987642 223557889999999999999999999999988
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+....++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++++.
T Consensus 155 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 155 --NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG---------HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 5666789999999999999999999999999988433 25689999999999999999999999999987
Q ss_pred HhccCCCchHHHHHHHHHHHHHHh
Q 011858 404 EDKPGQQSTIAGIEARMGVMFYMV 427 (476)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~ 427 (476)
+... .++..++.+....
T Consensus 224 p~~~-------~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHM-------LALHAKKLLGHHH 240 (243)
T ss_dssp TTCH-------HHHHHHTC-----
T ss_pred cchH-------HHHHHHHHHHhhc
Confidence 7664 5555555554433
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=2.1e-21 Score=164.26 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
...+..++.+|.++...|++++|+.+|++++...+. . ..++..+|.++...|++++|+..++++++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 86 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-----D----AIPYINFANLLSSVNELERALAFYDKALEL---- 86 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT-----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-----c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Confidence 345678999999999999999999999999987542 1 255899999999999999999999999987
Q ss_pred hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 198 LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
.+....++..+|.++...|++++|+.+++++++..+. ...++..+|.++...|++++|+.++++++..
T Consensus 87 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 87 ----DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--------NGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ----CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999999987532 2345888999999999999999999998764
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
. +....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++
T Consensus 155 ~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 155 N------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp C------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred C------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2 233567899999999999999999999999988 56667899999999999999999999999999
Q ss_pred HHHcC
Q 011858 358 RIYAR 362 (476)
Q Consensus 358 ~~~~~ 362 (476)
++.+.
T Consensus 221 ~~~p~ 225 (243)
T 2q7f_A 221 DIQPD 225 (243)
T ss_dssp HHCTT
T ss_pred ccCcc
Confidence 98543
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=4.1e-21 Score=178.05 Aligned_cols=219 Identities=14% Similarity=0.056 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC
Q 011858 185 GCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQF-DKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263 (476)
Q Consensus 185 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 263 (476)
..+++++....... ...+..+.+++.+|.++...|++ ++|+.+|++++++.+. ...++..+|.+|...|+
T Consensus 82 ~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 82 EEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE--------LVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCC
Confidence 33444444443332 23567788999999999999999 9999999999987543 34568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 011858 264 YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSL---------CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFV 334 (476)
Q Consensus 264 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 334 (476)
+++|+.+|++++.+ .+. ..++.++|.++... |++++|+.+|++++++ .|....++.
T Consensus 153 ~~~A~~~~~~al~~------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 217 (474)
T 4abn_A 153 VTSAHTCFSGALTH------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWY 217 (474)
T ss_dssp HHHHHHHHHHHHTT------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHHHHHHHhh------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 99999999999763 233 48899999999999 9999999999999998 777889999
Q ss_pred HHHHHHHHc--------CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 335 RLADLYHRT--------GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 335 ~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
++|.+|... |++++|+.+|++++++.+. ......++.++|.+|...|++++|+.+|++++++.+..
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999 9999999999999998431 11347899999999999999999999999999998776
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
. .++..++.++...|++++|+..+.+.
T Consensus 292 ~-------~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 P-------EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 78899999999999999999877653
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=3.2e-21 Score=178.72 Aligned_cols=236 Identities=12% Similarity=0.084 Sum_probs=195.7
Q ss_pred HHHHHHHHHHcCCCcc-------hHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCCh-hHHHHHHHHhhh
Q 011858 78 LLKLARDTIASGEGPS-------KALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKF-EEAVPALEKAIS 149 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~ 149 (476)
+......|+..+. .. .....+++++..++.... ..+..+.+++.+|.++...|++ ++|+.+|+++++
T Consensus 57 l~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~al~~l~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~ 131 (474)
T 4abn_A 57 LYCFRDSYFETHS-VEDAGRKQQDVQEEMEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131 (474)
T ss_dssp HHHHHHTHHHHSC-GGGGGGHHHHHHHHHHHHHHHHHHHHT----TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 4445555555542 33 445557777777766544 5567788999999999999999 999999999999
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh---------c
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQA---------M 220 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g 220 (476)
+.+.. ..++..+|.+|...|++++|+.+|++++++ .|. ..++..+|.++... |
T Consensus 132 ~~p~~---------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 132 LEPEL---------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp HCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred hCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence 86532 256999999999999999999999999987 344 58999999999999 9
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q 011858 221 QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAK--------GDYEAALEHLVLASMAMIANGQDNEVAAIDV 292 (476)
Q Consensus 221 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (476)
++++|+.+|++++++.+. ...++.++|.+|... |++++|+.+|++++.+. +.......++.
T Consensus 194 ~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~ 262 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVL--------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD---RKASSNPDLHL 262 (474)
T ss_dssp HHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---GGGGGCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---CCcccCHHHHH
Confidence 999999999999997543 345689999999999 99999999999998752 11116678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 293 SIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 293 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
++|.+|...|++++|+.+|++++++ .|....++..++.++...|++++|+..+.+
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998 777889999999999999999988876544
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=1.9e-20 Score=150.81 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
+.+|+++|.+|..+|++++|++.|++++++ +|....++..+|.+|...|++++|+..+.+++.. .+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------~~ 70 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------DT 70 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------Cc
Confidence 567999999999999999999999999874 3455778999999999999999999999999988 67
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
....++..+|.++...++++.|...+.+++.+.+. ...++..+|.++..+|++++|+..|++++++.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV---------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 77889999999999999999999999999998543 267889999999999999999999999999977664
Q ss_pred CCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 408 GQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 142 -------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 142 -------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred -------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 8899999999999999999999999998644
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=7e-20 Score=155.74 Aligned_cols=208 Identities=13% Similarity=0.036 Sum_probs=179.1
Q ss_pred hhH-HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 118 LDY-AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 118 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
+.. +.++..+|.++...|++++|+.+|++++...+. . ..++..+|.++...|++++|+.+++++++.
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 100 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-----S----ADAHAALAVVFQTEMEPKLADEEYRKALAS--- 100 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 443 788999999999999999999999999988542 1 246899999999999999999999999987
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.+....++..+|.++...|++++|+.++++++. . ...+....++..+|.++...|++++|+.++++++.
T Consensus 101 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 101 -----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ----D--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----C--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----C--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455678899999999999999999999999987 1 11234567789999999999999999999999876
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 277 AMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
.. +....++..+|.++...|++++|+.+++++++. .+.....+..++.++...|++++|..+++++
T Consensus 170 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 170 LN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 42 233667899999999999999999999999876 5566788999999999999999999999999
Q ss_pred HHHHcC
Q 011858 357 LRIYAR 362 (476)
Q Consensus 357 ~~~~~~ 362 (476)
++..+.
T Consensus 236 ~~~~p~ 241 (252)
T 2ho1_A 236 KRLYPG 241 (252)
T ss_dssp HHHCTT
T ss_pred HHHCCC
Confidence 998543
No 65
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=1.3e-19 Score=151.25 Aligned_cols=205 Identities=15% Similarity=0.070 Sum_probs=179.8
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
.++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.+++++++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------ 74 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------ 74 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------
Confidence 56899999999999999999999999987 4556788999999999999999999999999987432
Q ss_pred hHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 011858 245 LEESADRRLMALICEAK-GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG 323 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 323 (476)
...++..+|.++... |++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++.
T Consensus 75 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 142 (225)
T 2vq2_A 75 --SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------ 142 (225)
T ss_dssp --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred --ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 245688999999999 999999999999866 3455666788999999999999999999999999988
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc-CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA-RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
.+....++..+|.++...|++++|+.+++++++..+ .. ...+..++.++...|+.++|..+++.+...
T Consensus 143 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 143 --QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ---------ADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 566688999999999999999999999999999865 32 455778889999999999999999998877
Q ss_pred HHhc
Q 011858 403 LEDK 406 (476)
Q Consensus 403 ~~~~ 406 (476)
.+..
T Consensus 212 ~p~~ 215 (225)
T 2vq2_A 212 FPYS 215 (225)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6655
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=2.2e-20 Score=150.45 Aligned_cols=166 Identities=23% Similarity=0.285 Sum_probs=149.6
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
.+|+++|.++..+|++++|+..|++++++ +|....++..+|.++...|++++|+..+.+++...+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------ 71 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------ 71 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------
Confidence 46999999999999999999999999998 6778899999999999999999999999999876433
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
...++..+|.++...++++.|...+.+++.. .+....++..+|.++...|++++|+..|++++++
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------- 136 (184)
T 3vtx_A 72 --SAEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI------- 136 (184)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-------
Confidence 2455788999999999999999999998763 3344667899999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
+|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 137 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 -KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 78889999999999999999999999999999874
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=1e-20 Score=181.69 Aligned_cols=174 Identities=16% Similarity=0.231 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
+..+.+++++|.++..+|++++|+.+|++++++ .+....+++++|.+|..+|++++|+.+|++++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------- 72 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------- 72 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 466788999999999999999999999999874 3555788999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
+|....++.++|.++..+|++++|+++|++++++.+. ...++.++|.+|..+|++++|+.+|++++++.+
T Consensus 73 -~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~---------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 73 -SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---------FADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7888999999999999999999999999999998543 378999999999999999999999999999987
Q ss_pred hccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q 011858 405 DKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASG 448 (476)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 448 (476)
+.. .++.++|.++..+|++++|.+.+++++++.....
T Consensus 143 ~~~-------~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 143 DFP-------DAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp CCH-------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred CCh-------HHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 764 8999999999999999999999999999987653
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.9e-20 Score=161.57 Aligned_cols=252 Identities=15% Similarity=0.020 Sum_probs=194.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhH
Q 011858 88 SGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGY 167 (476)
Q Consensus 88 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 167 (476)
.| ++++|+..++++++... ...+..+.++..+|.++...|++++|+.+|++++...+. . ..++
T Consensus 18 ~~-~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~----~~~~ 80 (275)
T 1xnf_A 18 TL-QQEVILARMEQILASRA-------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-----M----PEVF 80 (275)
T ss_dssp CH-HHHHHHHHHHHHHTSSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----C----HHHH
T ss_pred cc-hHHHHHHHHHHHHhccc-------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-----c----HHHH
Confidence 45 48888888888877410 124678889999999999999999999999999998652 2 2458
Q ss_pred hhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHH
Q 011858 168 MQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEE 247 (476)
Q Consensus 168 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 247 (476)
..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.++++++++.+...
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------- 145 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------- 145 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-------
Confidence 99999999999999999999999987 455678899999999999999999999999998754321
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
.... ...++...|++++|+..+++++... +.... ...++.++...++.++|+..+++++...... .+
T Consensus 146 -~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 212 (275)
T 1xnf_A 146 -FRSL-WLYLAEQKLDEKQAKEVLKQHFEKS---DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTSL----AE 212 (275)
T ss_dssp -HHHH-HHHHHHHHHCHHHHHHHHHHHHHHS---CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HH
T ss_pred -HHHH-HHHHHHHhcCHHHHHHHHHHHHhcC---CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cc
Confidence 1122 2234467799999999999886632 22221 2347778889999999999999988764332 33
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLL 396 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (476)
....++..+|.++...|++++|+.+|++++.+.+. + +...+.++...|++++|++.+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-----N-------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-----T-------CHHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-----h-------HHHHHHHHHHHHHHHhhHHHH
Confidence 45789999999999999999999999999987432 1 122366777888899988877
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=4.7e-19 Score=147.76 Aligned_cols=208 Identities=11% Similarity=0.070 Sum_probs=178.5
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
.+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---------ELAWLVRAEIYQYLKVNDKAQESFRQALSI--- 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Confidence 56778899999999999999999999999999986522 145899999999999999999999999987
Q ss_pred HhcCCchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQA-MQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
.+....++..+|.++... |++++|+.+++++++ . . ..+....++..+|.++...|++++|+.++++++
T Consensus 72 -----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~---~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 72 -----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D---P--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp -----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---T--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---c--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455677899999999999 999999999999987 1 1 122446678999999999999999999999987
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHHHH
Q 011858 276 MAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP-SVASVFVRLADLYHRTGKLRESKSYCE 354 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 354 (476)
... +....++..+|.++...|++++|+.+++++++. .+ .....+..++.++...|+.++|..+++
T Consensus 141 ~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 141 AAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 642 333667899999999999999999999999987 34 556677888999999999999999999
Q ss_pred HHHHHHc
Q 011858 355 NALRIYA 361 (476)
Q Consensus 355 ~a~~~~~ 361 (476)
.+....+
T Consensus 207 ~~~~~~p 213 (225)
T 2vq2_A 207 QLQANFP 213 (225)
T ss_dssp HHHHHCT
T ss_pred HHHHhCC
Confidence 9887743
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=2.6e-21 Score=178.21 Aligned_cols=307 Identities=12% Similarity=0.066 Sum_probs=171.8
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhhccccC
Q 011858 79 LKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKF---EEAVPALEKAISVPDVTR 155 (476)
Q Consensus 79 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~ 155 (476)
..+|..+...| ++++|+.+|+++.+. + ...+++.+|.+|...|+. ++|+.+|+++++..
T Consensus 7 ~~la~~~~~~g-~~~~A~~~~~~aa~~---------g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~---- 68 (452)
T 3e4b_A 7 QRLANEALKRG-DTVTAQQNYQQLAEL---------G----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS---- 68 (452)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH---------T----CCTGGGTCC------------------------------
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHC---------C----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC----
Confidence 56788889998 499999999998763 1 233677888888888888 89999998887551
Q ss_pred CCchhHHHHHhHhhHHHHHHHcC-----ChhhHHHHHHHHHHHHHH---------H-hcCC---------------chhH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLG-----QVDRSIGCYEEGLKIQIE---------A-LGET---------------DPRV 205 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~---------~-~~~~---------------~~~~ 205 (476)
..+++.+|.++...| ++++|+.+|+++++.... . .+.. ....
T Consensus 69 --------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 69 --------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 134788888666665 778888888888763100 0 0000 0001
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcC
Q 011858 206 GETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKG---DYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~ 282 (476)
..+++.+|.+|...+.++++........+.... .++ .+++.+|.+|...| ++++|+++|+++..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------ 207 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTD------ICYVELATVYQKKQQPEQQAELLKQMEAGVS------ 207 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCT------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCH------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------
Confidence 223444455555544444333332222222211 111 14667777777777 77777777776644
Q ss_pred CChhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH-H--HHcCChhHHHHHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLC-----RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADL-Y--HRTGKLRESKSYCE 354 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 354 (476)
..+..+..++++|.+| ..| ++++|+.+|+++. +....+++++|.+ + ...+++++|+.+|+
T Consensus 208 ~g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 208 RGTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp TTCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 2223344456677766 334 5667777777664 1235667777777 3 45677788888888
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH---
Q 011858 355 NALRIYARPVPGTTAEEIAGGLTEISAIYESVD-----EPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM--- 426 (476)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 426 (476)
++.+.. ...+++++|.+|. .| ++++|+.+|+++. +.. ..++++||.+|..
T Consensus 276 ~Aa~~g-----------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-------~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 276 NGRAAD-----------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-------VAADYYLGQIYRRGYL 333 (452)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-------HHHHHHHHHHHHTTTT
T ss_pred HHHHCC-----------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-------HHHHHHHHHHHHCCCC
Confidence 777531 2567777887777 45 7888888888776 333 2677788877776
Q ss_pred -hhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhccccccccc
Q 011858 427 -VGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCP 468 (476)
Q Consensus 427 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (476)
..++++|+.+|+++.+ .+. ..+..+||.+|..
T Consensus 334 ~~~d~~~A~~~~~~Aa~----~g~------~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAAR----NGQ------NSADFAIAQLFSQ 366 (452)
T ss_dssp SSCCHHHHHHHHHHHHT----TTC------TTHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHh----hCh------HHHHHHHHHHHHh
Confidence 3378888888888764 122 2456778877763
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=2.9e-20 Score=178.69 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=158.8
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
.|..+.++.++|.++..+|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+.+|++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRI---- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 6788999999999999999999999999999998543 3566999999999999999999999999874
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.+....+++++|.++..+|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..|++++++.+
T Consensus 73 --~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 73 --SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3556789999999999999999999999999999 788899999999999999999999999999999854
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
. ...++.++|.++..+|++++|++.+++++++.++.
T Consensus 143 ~---------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 143 D---------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp C---------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred C---------ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 3 37789999999999999999999999999998764
No 72
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.84 E-value=1.1e-18 Score=142.98 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=165.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 011858 259 EAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLAD 338 (476)
Q Consensus 259 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 338 (476)
...|++++|.+.++.. .+++.....++..+|.++...|++++|+.++++++++++.. ++.+....++.++|.
T Consensus 3 ~~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHH
Confidence 4678999999855433 22445678899999999999999999999999999998876 456778899999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 011858 339 LYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEA 418 (476)
Q Consensus 339 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (476)
++...|++++|+.++++++++.+.. +.+......++..+|.++...|++++|+.++++++.+.+.. +.....+.++.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~ 151 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFR 151 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 9999999999999999999998864 33444678899999999999999999999999999998877 66667778889
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcccCchhhhhhhcccccccccc
Q 011858 419 RMGVMFYMVGRYEEARSSFESAIAKLRASGERKSAFFRSCVEPDGIGLCPV 469 (476)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 469 (476)
.+|.++...|++++|..++++++++.+..++. ...+.++..++.+....
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~ 200 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDS--EAVNELMTRLNGLEHHH 200 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHhcccchhhcc
Confidence 99999999999999999999999999999876 34457777777665443
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.83 E-value=9.8e-19 Score=151.88 Aligned_cols=194 Identities=10% Similarity=0.041 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE---VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
.+...+..+...|++++|...+++++... ...+. ....+..+|.++...|++++|+.++++++++.... .+.
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~ 151 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDV 151 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccH
Confidence 34556778889999999999999886522 22222 24455679999999999999999999999964332 233
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.....++.++|.+|..+|++++|+.+|+++++..... ..+.+....++.++|.+|..+|++++|+.++++++++.+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 4457789999999999999999999999999988764 34677788899999999999999999999999999999887
Q ss_pred cCCCchHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcccC
Q 011858 407 PGQQSTIAGIEARMGVMFYMVG-RYEEARSSFESAIAKLRASGERK 451 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~ 451 (476)
+.....+.++..+|.+|..+| ++++|+.+|++|+.+++..++..
T Consensus 230 -~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~ 274 (293)
T 3u3w_A 230 -NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp -TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTG
T ss_pred -CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 677778899999999999999 57999999999999999988753
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.83 E-value=1.3e-19 Score=166.87 Aligned_cols=297 Identities=16% Similarity=0.082 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHHHcCCCc---chHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcC-----ChhHHHHHHHH
Q 011858 75 GPFLLKLARDTIASGEGP---SKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLG-----KFEEAVPALEK 146 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 146 (476)
..+++.+|..+...|+ + ++|+.+|+++++. ...+++.+|.++...| ++++|+.+|++
T Consensus 35 ~~A~~~Lg~~y~~~g~-~~d~~~A~~~~~~A~~~--------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~ 99 (452)
T 3e4b_A 35 SEAQVGLADIQVGTRD-PAQIKQAEATYRAAADT--------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKK 99 (452)
T ss_dssp CTGGGTCC-------------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhC--------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Confidence 3456667777776663 6 7777777777653 2346777777665555 67788888888
Q ss_pred hhhhccccC---------------CCchh---------HHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCc
Q 011858 147 AISVPDVTR---------------GADHA---------LAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 147 al~~~~~~~---------------~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
+++...... ..... .....+++.+|.+|...+.++++............ ..+
T Consensus 100 Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~ 175 (452)
T 3e4b_A 100 AFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTT 175 (452)
T ss_dssp HHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTC
T ss_pred HHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCC
Confidence 776421000 00000 00012355666666666666666555333332221 123
Q ss_pred hhHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHH
Q 011858 203 PRVGETCRYLAEAHVQAM---QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAK----GDYEAALEHLVLAS 275 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~ 275 (476)
+ .+++.+|.+|...| ++++|+.+|+++.+.. . ..+..++++|.+|... +++++|+.+|+++.
T Consensus 176 ~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 176 D---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----T----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp T---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----C----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred H---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----C----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3 38899999999999 9999999999997643 1 2244468899999776 79999999999873
Q ss_pred HHHHHcCCChhHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC-----Chh
Q 011858 276 MAMIANGQDNEVAAIDVSIGNI-Y--LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG-----KLR 347 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~ 347 (476)
+....+++++|.+ + ...+++++|+.+|+++.+. ....++++||.+|. .| +++
T Consensus 245 ---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 245 ---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp ---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred ---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHH
Confidence 3456788999998 4 5789999999999999864 24778999999998 66 999
Q ss_pred HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 011858 348 ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVM 423 (476)
Q Consensus 348 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (476)
+|+.+|+++. .. ...+++++|.+|.. ..++++|+.+|+++.+. +. ..+.+.||.+
T Consensus 305 ~A~~~~~~Aa---~g---------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g~----~~A~~~Lg~~ 363 (452)
T 3e4b_A 305 AAEAHFEKAV---GR---------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-----GQ----NSADFAIAQL 363 (452)
T ss_dssp HHHHHHHTTT---TT---------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-----TC----TTHHHHHHHH
T ss_pred HHHHHHHHHh---CC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-----Ch----HHHHHHHHHH
Confidence 9999999998 22 26789999999987 44999999999999763 22 2578899999
Q ss_pred HHH----hhcHHHHHHHHHHHHH
Q 011858 424 FYM----VGRYEEARSSFESAIA 442 (476)
Q Consensus 424 ~~~----~g~~~~A~~~~~~a~~ 442 (476)
|.. ..++.+|..+|++|.+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Confidence 985 4589999999999985
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.83 E-value=3.2e-19 Score=149.04 Aligned_cols=189 Identities=9% Similarity=0.004 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
+..++.+|.+++..|++++|+..|++++.+.+. .+. .+++.+|.++...|++++|+.+|+++++.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKK------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------
Confidence 368999999999999999999999999998741 111 34777999999999999999999999976
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA 280 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 280 (476)
+|....++..+|.++...|++++|+..+++++++.+..... ....+.++..+|.++...|++++|+++|++++.
T Consensus 72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---- 145 (228)
T 4i17_A 72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---- 145 (228)
T ss_dssp -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----
Confidence 67788999999999999999999999999999887553211 123446799999999999999999999999865
Q ss_pred cCCChh--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHhcCCCCCchHHH
Q 011858 281 NGQDNE--VAAIDVSIGNIYLSLCRF---------------------------DEAVFSYQKALTVFKSSKGDNHPSVAS 331 (476)
Q Consensus 281 ~~~~~~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~ 331 (476)
..+. ...++.++|.+|...|+. ++|+.++++++++ .|....
T Consensus 146 --~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~ 215 (228)
T 4i17_A 146 --VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTE 215 (228)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHH
T ss_pred --cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHH
Confidence 4566 788999999999999888 8899999999988 666677
Q ss_pred HHHHHHHHH
Q 011858 332 VFVRLADLY 340 (476)
Q Consensus 332 ~~~~la~~~ 340 (476)
+...++.+.
T Consensus 216 ~~~~l~~i~ 224 (228)
T 4i17_A 216 IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=8.5e-19 Score=149.70 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=175.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
.+..+..++.+|..++..|++++|+..|++++...+... ....+++.+|.++...|++++|+..|+++++..+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p- 83 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ- 83 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-
Confidence 455677899999999999999999999999999875321 1125689999999999999999999999999742
Q ss_pred HhcCCchhHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHH
Q 011858 197 ALGETDPRVGETCRYLAEAHVQ--------AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAAL 268 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 268 (476)
+++....+++.+|.++.. .|++++|+..|+++++..+..... ...+..
T Consensus 84 ----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~a~~~------------ 139 (261)
T 3qky_A 84 ----IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------DDATQK------------ 139 (261)
T ss_dssp ----TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------HHHHHH------------
T ss_pred ----CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------HHHHHH------------
Confidence 355778899999999999 999999999999999887653321 111111
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc-----
Q 011858 269 EHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT----- 343 (476)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----- 343 (476)
+.... ......++.+|.+|...|++++|+..|+++++.. ++.+....++..+|.+|..+
T Consensus 140 --~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~ 203 (261)
T 3qky_A 140 --IRELR---------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSV 203 (261)
T ss_dssp --HHHHH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSC
T ss_pred --HHHHH---------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccch
Confidence 11110 1123347889999999999999999999999872 22344788999999999977
Q ss_pred -----CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 011858 344 -----GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEAL 393 (476)
Q Consensus 344 -----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (476)
|++++|+..|+++++..+. .+....+...++.++...++++++.
T Consensus 204 ~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 204 RARQPERYRRAVELYERLLQIFPD------SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhcccchHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8999999999999998543 4456677888888888777776543
No 77
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.82 E-value=1.2e-18 Score=151.37 Aligned_cols=195 Identities=10% Similarity=0.027 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
+...+..+...|++++|++.+.+++...............+..+|.++...|++++|+.++++++++.... .+.....
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~ 155 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHHH
Confidence 55678888999999999999998876432222222345566789999999999999999999999875443 2344457
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQ 410 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 410 (476)
.++.++|.+|..+|++++|+.+|++++++.... .........++.++|.+|..+|++++|+.++++++++.... +..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~ 232 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSM 232 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcH
Confidence 799999999999999999999999999887664 22333334799999999999999999999999999998765 666
Q ss_pred chHHHHHHHHHHHHHHhhcHHHH-HHHHHHHHHHHHHhccc
Q 011858 411 STIAGIEARMGVMFYMVGRYEEA-RSSFESAIAKLRASGER 450 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~~~~~~~ 450 (476)
...+.++..+|.+|..+|++++| ..+|++|+.+++..++.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~ 273 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcH
Confidence 77789999999999999999999 88899999999888765
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2e-17 Score=156.45 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=212.1
Q ss_pred CCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 69 LDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
..+|.....+..++.. ...| ++++|...|+++++. .|.....|..++..+...|++++|...|++++
T Consensus 7 ~~~P~~~~~w~~l~~~-~~~~-~~~~a~~~~e~al~~-----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 7 EENPYDLDAWSILIRE-AQNQ-PIDKARKTYERLVAQ-----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHCTTCHHHHHHHHHH-HHSS-CHHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhCCCCHHHHHHHHHH-HHhC-CHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4578888999999984 7787 599999999999985 56777899999999999999999999999999
Q ss_pred hhccccCCCchhHHHHHhHhhHHH-HHHHcCChhhHHH----HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-----
Q 011858 149 SVPDVTRGADHALAKFSGYMQLGD-TCSMLGQVDRSIG----CYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ----- 218 (476)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----- 218 (476)
...+. . ..|..++. +....|++++|.+ .|++++.. .|. ++....++...+.....
T Consensus 74 ~~~p~------~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 74 MKVLH------I----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp TTCCC------H----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCS
T ss_pred hcCCC------h----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcc
Confidence 98741 1 23555553 3445677777765 44444432 111 11112223222222222
Q ss_pred ----hccHHHHHHHHHHHHHH------------------------------------------------HHhcC------
Q 011858 219 ----AMQFDKAEELCKKTLEI------------------------------------------------HRAHS------ 240 (476)
Q Consensus 219 ----~g~~~~A~~~~~~al~~------------------------------------------------~~~~~------ 240 (476)
.|++++|..+|+++++. .....
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 33444444444433321 00000
Q ss_pred CCC----------------------------------------------chHHHHHHHHHHHHHHH-------hCCHH--
Q 011858 241 EPA----------------------------------------------SLEESADRRLMALICEA-------KGDYE-- 265 (476)
Q Consensus 241 ~~~----------------------------------------------~~~~~~~~~~la~~~~~-------~g~~~-- 265 (476)
.+. .+....+|..+|..+.. .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 000 00113345566666664 57766
Q ss_pred -----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchH-HHHHHHHHHH
Q 011858 266 -----AALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSV-ASVFVRLADL 339 (476)
Q Consensus 266 -----~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~ 339 (476)
+|+..|++++.. ..+....++..+|.++...|++++|...|++++++ .+.. ..+|..++.+
T Consensus 299 ~~~~~~A~~~~~~Al~~-----~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~ 365 (530)
T 2ooe_A 299 KLFSDEAANIYERAIST-----LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKF 365 (530)
T ss_dssp HHHHHHHHHHHHHHTTT-----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--------cccCchHHHHHHHHH
Confidence 677777766431 13445677888888888899999999999998876 3333 3578888888
Q ss_pred HHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 011858 340 YHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAI-YESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEA 418 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (476)
+.+.|++++|+..|+++++..+. ....+...+.+ +...|++++|..+|+++++..++.. .++.
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~~~~---------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-------~~~~ 429 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKAREDART---------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-------EYVL 429 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTC---------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-------HHHH
T ss_pred HHHhcCHHHHHHHHHHHHhccCC---------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-------HHHH
Confidence 88888899999999888875321 12233333433 3458999999999999999887664 7888
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 419 RMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 419 ~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.++.++...|++++|..+|++++..
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 8999999999999999999999864
No 79
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.82 E-value=3.8e-18 Score=139.76 Aligned_cols=194 Identities=14% Similarity=0.166 Sum_probs=162.5
Q ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011858 217 VQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGN 296 (476)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 296 (476)
+..|++++|.+.++... . ++ ...+.++..+|.++...|++++|+.++++++.+....++.+....++.++|.
T Consensus 3 ~~~g~~~~A~~~~~~~~----~--~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL----A--HP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHH----T--ST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc----C--Ch--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46789999998554431 1 11 2457789999999999999999999999999999999898999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHP-SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGG 375 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 375 (476)
++...|++++|+.++++++++.+.. ++.+ ....++.++|.++...|++++|+.++++++.+.+.. .+......+
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~ 149 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA---DDQVAIACA 149 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHH
Confidence 9999999999999999999998865 3233 678899999999999999999999999999998763 355566788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 011858 376 LTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF 424 (476)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (476)
+..+|.++...|++++|+.++++++++.... ++....+.++..++.+.
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAEL-EDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHhcccchh
Confidence 8999999999999999999999999999988 66666666666665543
No 80
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.7e-18 Score=155.80 Aligned_cols=239 Identities=15% Similarity=0.151 Sum_probs=206.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc---------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS---------LEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
....|..+...|+|++|++.|.++++..+...+... .....++..+|.+|...|++++|.+++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455677888999999999999999987766544211 12345688999999999999999999999999888
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
..+.......+...++.++...|++++|+.++++++.+.... .+......++.++|.+|...|++++|..++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 776666667788889999999999999999999999998877 456677899999999999999999999999999999
Q ss_pred HcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 360 YARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
.... .+.+....++..++.+|...|++++|..++++++.+...........+.++..+|.++...|++++|..+|.+
T Consensus 165 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 165 FKKL---DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTTS---SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHhc---ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8774 3566778999999999999999999999999999999888555566778889999999999999999999999
Q ss_pred HHHHHHHhcccCc
Q 011858 440 AIAKLRASGERKS 452 (476)
Q Consensus 440 a~~~~~~~~~~~~ 452 (476)
+++.+...+....
T Consensus 242 a~~~~~~~~~~~~ 254 (434)
T 4b4t_Q 242 SFESYHNLTTHNS 254 (434)
T ss_dssp HHHHHHHTTTSSC
T ss_pred HHHHhhhhhhhhh
Confidence 9999888776543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=1.7e-18 Score=144.70 Aligned_cols=171 Identities=12% Similarity=0.210 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE 286 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 286 (476)
..++.+|.++...|++++|+..|++++++.+.. ...++..+|.++...|++++|+.++++++. ..+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~ 74 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-------DSVTAYNCGVCADNIKKYKEAADYFDIAIK------KNYN 74 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHH------hCcc
Confidence 789999999999999999999999999886511 124577799999999999999999999975 4566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA-------SVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
...++..+|.++...|++++|+.++++++++ .|... .++..+|.++...|++++|+.+|++++++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKA--------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999998 34433 77999999999999999999999999986
Q ss_pred HcCCCCCCChHH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHhcc
Q 011858 360 YARPVPGTTAEE--IAGGLTEISAIYESVDEP---------------------------EEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 360 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~~~~~ 407 (476)
. +. ...++..+|.++...|+. ++|+.+|++++++.++..
T Consensus 147 ~---------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 147 T---------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp S---------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred C---------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 2 23 478899999999988888 889999999998877764
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=2.4e-18 Score=146.86 Aligned_cols=211 Identities=15% Similarity=0.113 Sum_probs=172.5
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
.+.....++.+|..++..|++++|+..|+++++..+. +.....+++.+|.++...|++++|+..|++++.. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~ 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---Y 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH---C
Confidence 4556788999999999999999999999999876533 2244677999999999999999999999998764 3
Q ss_pred CCChhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH--------------HHHHHH
Q 011858 282 GQDNEVAAIDVSIGNIYLS--------LCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF--------------VRLADL 339 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~~ 339 (476)
+.++....+++.+|.++.. .|++++|+..|+++++.. ++++....++ +.+|.+
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999 999999999999999883 2233334444 889999
Q ss_pred HHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhccCC
Q 011858 340 YHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV----------DEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
|...|++++|+..|+++++..+. .+....++..+|.+|..+ |++++|+..|+++++..++.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--- 228 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPD------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS--- 228 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHccCHHHHHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC---
Confidence 99999999999999999998543 233577899999999977 89999999999999887665
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
.....+...++.++...++++++..
T Consensus 229 -~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 229 -PLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred -hHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 3444667778888888888766543
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3.4e-17 Score=154.86 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------hccHH-------HHHHHHHHHHH-HHHhcCCCCchH
Q 011858 182 RSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-------AMQFD-------KAEELCKKTLE-IHRAHSEPASLE 246 (476)
Q Consensus 182 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~ 246 (476)
+++..|++++.. .|....++..+|..+.. .|+++ +|+..|+++++ +.+ .
T Consensus 256 ~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p--------~ 319 (530)
T 2ooe_A 256 RVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--------K 319 (530)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS--------S
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc--------c
Confidence 455566666665 35567788999998886 79987 88888888875 322 2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
...++..++.++...|++++|...|++++.+ .+. ....++..++.++...|++++|+..|+++++. .
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~ 386 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDI--DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------A 386 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------T
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---ccc--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------c
Confidence 3556889999999999999999999999763 111 12358899999999999999999999999875 3
Q ss_pred chHHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 327 PSVASVFVRLADL-YHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 327 ~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
+.....+...+.+ +...|++++|+.+|+++++..+. ...++..++.++...|+.++|..+|++++...+.
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~---------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 3334444555544 34689999999999999998654 2678899999999999999999999999876432
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
.+ .....++..........|+.+.+..++.++++.+++..+
T Consensus 458 ~~---~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 458 PP---EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp CG---GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred CH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 21 122356777788888899999999999999999886543
No 84
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.80 E-value=8e-18 Score=146.14 Aligned_cols=197 Identities=13% Similarity=0.047 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
+.....+...+..+...|++++|+..+.++++..+.... .......+..+|.++...|++++|+.++++++.......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE--FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH--HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 344556677888999999999999999999876432111 123445567789999999999999999999987665555
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS-VASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+......+++++|.+|...|++++|+.+|++++++.+... +... ...++.++|.+|..+|++++|+.++++++++..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6666788999999999999999999999999999887652 2333 337999999999999999999999999999976
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEA-LKLLQRAMKLLEDK 406 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 406 (476)
.. .+......++.++|.+|..+|++++| ..+|++++.+....
T Consensus 228 ~~---~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 228 RI---NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HT---TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hc---CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 52 24445688999999999999999999 88899999998776
No 85
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.7e-17 Score=145.21 Aligned_cols=227 Identities=11% Similarity=0.065 Sum_probs=182.0
Q ss_pred hHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHH-------cCCh-------hhHHHHHHHHHH-HHHHHhcCCc
Q 011858 138 EEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSM-------LGQV-------DRSIGCYEEGLK-IQIEALGETD 202 (476)
Q Consensus 138 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~ 202 (476)
++|+..|++++...+.. + .+|+.+|..+.. .|++ ++|+..|+++++ + .
T Consensus 33 ~~a~~~~~~al~~~p~~-----~----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH-----P----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L 95 (308)
T ss_dssp HHHHHHHHHHHHHHTTC-----H----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred HHHHHHHHHHHHHcCCC-----H----HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence 78999999999987532 2 458888888763 5886 899999999987 4 5
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
|....++..+|.++...|++++|...|++++++.+.. .. .++..+|.++...|++++|+..|++++...
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---- 164 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA---- 164 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----TH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC-----cc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Confidence 6667889999999999999999999999999853221 11 258889999999999999999999987631
Q ss_pred CChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 283 QDNEVAAIDVSIGNIYL-SLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+....++...+.+.. ..|++++|+..|+++++. .|....++..++.++...|++++|+..|++++....
T Consensus 165 --p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 165 --RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp --TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred --CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 222344555555543 379999999999999998 456688999999999999999999999999998521
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
- .+.....++..++.++...|++++|..+++++++..++..
T Consensus 235 l-----~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 235 L-----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp S-----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred C-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 0 1112467788899999999999999999999999988764
No 86
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.79 E-value=4.2e-17 Score=141.55 Aligned_cols=198 Identities=12% Similarity=-0.008 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEA 197 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 197 (476)
......+...+..+...|++++|+..+++++...+.. ......+..+..+|.++...|++++|+.+|++++.+....
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 4445556667888999999999999999999865321 1111113446679999999999999999999999853321
Q ss_pred hcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 198 LGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
.+....+.++.++|.+|...|++++|+.+|+++++....... .....+.++.++|.+|..+|++++|+.++++++.+
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 223345678999999999999999999999999999887643 34577889999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhc
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSLC-RFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 321 (476)
....++....+.++.++|.+|..+| ++++|+.+|++++.+++..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9998888889999999999999999 5799999999999998876
No 87
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-16 Score=147.60 Aligned_cols=236 Identities=13% Similarity=0.085 Sum_probs=197.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCch--------hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHH
Q 011858 123 SLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADH--------ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQ 194 (476)
Q Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 194 (476)
+....|..+...|++++|++.|.++++..+....... ......++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999988764332111 11122458899999999999999999999999987
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011858 195 IEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLA 274 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 274 (476)
... .+......+...++.++...|++++|+.++++++.+....... ...+.++..+|.+|...|++++|+.+++++
T Consensus 86 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 86 MQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--FLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--SSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 653 1222344567788999999999999999999999999887765 356788999999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 011858 275 SMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCE 354 (476)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 354 (476)
+.......+.+....++..+|.+|...|++++|..++++++.+..... .........+..+|.++...|++++|..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 998888888999999999999999999999999999999999887762 1123457888999999999999999999999
Q ss_pred HHHHHHcCC
Q 011858 355 NALRIYARP 363 (476)
Q Consensus 355 ~a~~~~~~~ 363 (476)
++++.....
T Consensus 241 ~a~~~~~~~ 249 (434)
T 4b4t_Q 241 ESFESYHNL 249 (434)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHhhhh
Confidence 999987765
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.6e-17 Score=145.23 Aligned_cols=226 Identities=13% Similarity=0.042 Sum_probs=180.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------hccH-------HHHHHHHHHHHH-HHHhcCCCCch
Q 011858 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-------AMQF-------DKAEELCKKTLE-IHRAHSEPASL 245 (476)
Q Consensus 181 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 245 (476)
++|+..|++++.. .|....+|..+|.++.. .|++ ++|+..|+++++ +.+
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-------- 96 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--------
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc--------
Confidence 6888999999987 56677888888888764 4775 899999999988 432
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA-AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
....++..+|.++...|++++|...|++++.+ .+... .++..+|.++...|++++|+..|+++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------- 163 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED------- 163 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Confidence 23456889999999999999999999999762 22222 27899999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHR-TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+....++...+.+... .|++++|+..|+++++..+. ...++..++.++...|++++|+..|++++...
T Consensus 164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 33445566666655433 79999999999999998754 26788999999999999999999999999852
Q ss_pred HhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc
Q 011858 404 EDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASG 448 (476)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 448 (476)
.-. ......++..++..+...|++++|...++++++..++..
T Consensus 234 ~l~---p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 234 SLP---PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSC---GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 100 001236788889999999999999999999998876543
No 89
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.77 E-value=4.5e-17 Score=128.15 Aligned_cols=161 Identities=15% Similarity=0.201 Sum_probs=134.6
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
++....+.++..+|.++...|++++|+.++++++++.... .+......++..+|.++...|++++|+.++++++++.+
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455667788899999999999999999999999888775 34455667888999999999999999999999999887
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
.. .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++
T Consensus 81 ~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 81 QL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hh---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 63 3555667888999999999999999999999999998877 5666777888999999999999999999999999
Q ss_pred HHHHHhc
Q 011858 442 AKLRASG 448 (476)
Q Consensus 442 ~~~~~~~ 448 (476)
++.++.+
T Consensus 157 ~~~~~~~ 163 (164)
T 3ro3_A 157 EISREVG 163 (164)
T ss_dssp HHHTTC-
T ss_pred HHHHHhC
Confidence 8876543
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=5.7e-17 Score=130.58 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
.....+..+|.++...|++++|+..+++++. ..+....++..+|.++...|++++|+.+++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------- 71 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYD------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCC------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------
Confidence 3466788999999999999999999998754 23344678899999999999999999999999988
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.+....++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++...+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 5666889999999999999999999999999998533 2568899999999999999999999999988655
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
. ..++..+|.++...|++++|..++++++++.+.
T Consensus 143 ~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 143 E-------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred c-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4 378899999999999999999999999987644
No 91
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.76 E-value=2e-16 Score=124.44 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=143.8
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIA 280 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 280 (476)
+....+.++..+|.++...|++++|+.++++++++.+...+. ...+.++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999886654 456778999999999999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
.++......++.++|.++...|++++|+.++++++++.+.. .+.+....++..+|.++...|++++|+.++++++++.
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999998776 4456678899999999999999999999999999998
Q ss_pred cCC
Q 011858 361 ARP 363 (476)
Q Consensus 361 ~~~ 363 (476)
++.
T Consensus 160 ~~~ 162 (164)
T 3ro3_A 160 REV 162 (164)
T ss_dssp TTC
T ss_pred HHh
Confidence 663
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=9.9e-16 Score=150.68 Aligned_cols=297 Identities=17% Similarity=0.153 Sum_probs=146.9
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHH-----------HhhhccCCChhHHHHH---------HHHHHHHHhcCCh
Q 011858 78 LLKLARDTIASGEGPSKALDYAIRASKSFER-----------CAAAEAEPSLDYAMSL---------HVLAAIYCSLGKF 137 (476)
Q Consensus 78 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~~~~---------~~l~~~~~~~g~~ 137 (476)
.-..++.|...| ++.+|++++++++-- .+ ........+.....-+ ..+|.++...|.+
T Consensus 988 Vs~~vKaf~~ag-lp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 988 VSVTVKAFMTAD-LPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred hHHHHHHHHhCC-CHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 355667788888 599999999998821 11 0000000011111111 1248888889999
Q ss_pred hHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 011858 138 EEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHV 217 (476)
Q Consensus 138 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 217 (476)
++|..+|+++.... ..+...+...+++++|.++++++ ....+|+.+|.++.
T Consensus 1066 EEAf~IYkKa~~~~----------------~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1066 EEAFAIFRKFDVNT----------------SAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHcCCHH----------------HHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHH
Confidence 99998888863221 11112222334444444433322 11334555555555
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------------
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG--------------- 282 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------------- 282 (476)
..|++++|+..|.++ . ....+..++.++...|++++|+++|..++.......
T Consensus 1117 ~~G~~kEAIdsYiKA-------d------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-------D------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 1183 (1630)
T ss_pred hCCCHHHHHHHHHhc-------C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCH
Confidence 555555555555443 0 012244455555555555555555554433210000
Q ss_pred -------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 283 -------QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 283 -------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
..+.. ..+..+|..+...|+|++|..+|.++ ..|..++.++.++|++++|++.+++
T Consensus 1184 eele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1184 AELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 01111 23445777777777777777777664 2456667777777777777777766
Q ss_pred HHHHHcCC------C----------CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 011858 356 ALRIYARP------V----------PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEAR 419 (476)
Q Consensus 356 a~~~~~~~------~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (476)
+.....-. . -+.........+..++..|...|.+++|+.++++++.+.+... ..+..
T Consensus 1247 A~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~-------gmftE 1319 (1630)
T 1xi4_A 1247 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM-------GMFTE 1319 (1630)
T ss_pred hCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh-------HHHHH
Confidence 63321000 0 0000000122333455555555666666666655554443331 34444
Q ss_pred HHHHHH--HhhcHHHHHHHHHHHHH
Q 011858 420 MGVMFY--MVGRYEEARSSFESAIA 442 (476)
Q Consensus 420 l~~~~~--~~g~~~~A~~~~~~a~~ 442 (476)
+|.+|. +-++..+++++|...+.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 444443 23455555555555444
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=6e-17 Score=130.45 Aligned_cols=174 Identities=19% Similarity=0.174 Sum_probs=151.4
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN 281 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 281 (476)
.......+..+|.++...|++++|+..++++++..+ ....++..+|.++...|++++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---- 71 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------FDVDVALHLGIAYVKTGAVDRGTELLERSLAD---- 71 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 345677899999999999999999999999876432 22556889999999999999999999998764
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++..+
T Consensus 72 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 72 --APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 2334667899999999999999999999999988 566678999999999999999999999999999853
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
. ...++..+|.++...|++++|+.+++++++..+..
T Consensus 142 ~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 142 N---------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp T---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred c---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3 26788999999999999999999999999998765
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.8e-17 Score=160.40 Aligned_cols=203 Identities=12% Similarity=0.003 Sum_probs=165.4
Q ss_pred hhHHHHHHHHHHHHHhcCChhHHHHHHHHhh--------hhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHH
Q 011858 118 LDYAMSLHVLAAIYCSLGKFEEAVPALEKAI--------SVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEE 189 (476)
Q Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 189 (476)
|....+++..+ ...|++++|+..+++++ ...+ ++. .++..+|.++...|++++|+..|++
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p-----~~~----~~~~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS-----ESV----ELPLMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT-----TCS----HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc-----cch----hHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33344455555 78999999999999999 3332 121 4589999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHH
Q 011858 190 GLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALE 269 (476)
Q Consensus 190 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 269 (476)
+++. +|....+++.+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++ +.
T Consensus 459 al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--------~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 459 LAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE--------LAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp HHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--------SHHHHHHHHHHHHHTCCCT-TC
T ss_pred Hhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCChHH-HH
Confidence 9987 56678899999999999999999999999999987553 3448899999999999999 99
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHH
Q 011858 270 HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRES 349 (476)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 349 (476)
.|++++++ ++....+++++|.++...|++++|+..|++++++ .|....++.++|.++...++.+++
T Consensus 522 ~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 522 FYQTVWST------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------C
T ss_pred HHHHHHHh------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCC
Confidence 99999773 3445678999999999999999999999999988 788899999999999888876665
Q ss_pred -HHHHHHHHHHHcCC
Q 011858 350 -KSYCENALRIYARP 363 (476)
Q Consensus 350 -~~~~~~a~~~~~~~ 363 (476)
...++++++.....
T Consensus 588 ~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 588 TEEQIRDAARRVEAL 602 (681)
T ss_dssp CHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhhC
Confidence 67777777777664
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=9.2e-18 Score=129.41 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=125.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 011858 253 LMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASV 332 (476)
Q Consensus 253 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 332 (476)
.||.++...|++++|+..+++++. ..+.....++.+|.+|...|++++|+.+|++++++ +|....+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 478888999999999999998743 56677788899999999999999999999999999 7888999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHhccCCCc
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKL-LQRAMKLLEDKPGQQS 411 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~~ 411 (476)
+..+|.+|...|++++|+.+|++++++.+. ...++..+|.++...|++++|... +++++++.|.++
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~---- 134 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPT---------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP---- 134 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH----
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH----
Confidence 999999999999999999999999998543 367899999999999999877665 699999988875
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 011858 412 TIAGIEARMGVMFYMVGR 429 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~ 429 (476)
.++..++.++...|+
T Consensus 135 ---~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 135 ---AVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---HHHHHHHHHHHTCCC
T ss_pred ---HHHHHHHHHHHHhCc
Confidence 777788888877764
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=6.3e-18 Score=163.61 Aligned_cols=201 Identities=10% Similarity=-0.019 Sum_probs=159.5
Q ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011858 217 VQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGN 296 (476)
Q Consensus 217 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 296 (476)
...|++++|+..++++++..-.......+....++..+|.++...|++++|+..|++++... +....+++++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------cchHHHHHHHHH
Confidence 67899999999999998211111111112334568899999999999999999999997742 344678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGL 376 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (476)
++...|++++|+..|++++++ .|....++.++|.++..+|++++ +.+|++++++.+. ...++
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~---------~~~a~ 537 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG---------VISAA 537 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT---------CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc---------hHHHH
Confidence 999999999999999999999 77888999999999999999999 9999999998543 36789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHH-HHHHHHHHHHHHHhc
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEA-RSSFESAIAKLRASG 448 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~~~~~ 448 (476)
+++|.++..+|++++|+..|++++++.+.. ..++.++|.++...++.+++ ...+++|+..+....
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHF-------TTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-------HHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCccc-------HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 999999999999999999999998776655 38889999999887775555 566777776666553
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=3.4e-17 Score=126.24 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=123.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAI 290 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 290 (476)
.||.++...|++++|+..+++++...+.... .++.+|.+|...|++++|+++|++++.+ .+....+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~--------~~~~la~~y~~~~~~~~A~~~~~~al~~------~p~~~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI--------KGFYFAKLYYEAKEYDLAKKYICTYINV------QERDPKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT--------THHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Confidence 5788999999999999999999887665433 3789999999999999999999999874 3555788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHH-HHHHHHHHcCCCCCCCh
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSY-CENALRIYARPVPGTTA 369 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~~~ 369 (476)
+..+|.+|...|++++|+.+|++++++ .|....++.++|.+|...|++++|... +++++++.+.
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~------- 132 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG------- 132 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-------
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-------
Confidence 999999999999999999999999999 788899999999999999999887765 6999998544
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 011858 370 EEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~ 388 (476)
...++...+.++..+|+
T Consensus 133 --~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 --SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --CHHHHHHHHHHHHTCCC
T ss_pred --CHHHHHHHHHHHHHhCc
Confidence 25677888888888775
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=1.6e-16 Score=130.15 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVS----------------IGNIYLSLCRFDEAVFSYQ 312 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~ 312 (476)
..+...|..+...|++++|+..|++++.. .+....+++. +|.++...|++++|+..|+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34677899999999999999999999774 4555666777 9999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCH--H
Q 011858 313 KALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP--E 390 (476)
Q Consensus 313 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~ 390 (476)
+++++ .|....++..+|.++...|++++|+.+|++++++.+. ...++..+|.+|...|+. .
T Consensus 79 ~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---------~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 79 ELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---------NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHhHHHHH
Confidence 99999 7888999999999999999999999999999998543 367899999999877643 4
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 391 EALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 391 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
.+...+++++. .......++.+|.++...|++++|+.+|++++++.+
T Consensus 142 ~~~~~~~~~~~--------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 142 KLETDYKKLSS--------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHC---C--------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhC--------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45555555432 122234677889999999999999999999997654
No 99
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.73 E-value=3.5e-16 Score=143.06 Aligned_cols=152 Identities=10% Similarity=0.040 Sum_probs=141.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEE 371 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 371 (476)
...+..+..+|+|++|+.++++++++.++.+|.+++..+.++.+||.+|..+|+|++|+.++++++++..+.. |.+++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~ 391 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY-HHNNAQ 391 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CTTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc-CCCCHH
Confidence 3445567789999999999999999999999999999999999999999999999999999999999998886 899999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 372 IAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG-QQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
++..+++||.+|..+|++++|+.+|++|+++.....| +++..+.+...++.++..++.+++|...|.++.+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877 667888899999999999999999999999997644
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=4.2e-17 Score=133.60 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH----------------HHHHHHHhCCHHHHHH
Q 011858 206 GETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRL----------------MALICEAKGDYEAALE 269 (476)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 269 (476)
+..+...|..+...|++++|+.+|++++++.+.. ..++.. +|.++...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR--------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH--------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567888999999999999999999999986543 333555 9999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCCh--h
Q 011858 270 HLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKL--R 347 (476)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~ 347 (476)
.|++++.+ .|....++.++|.++...|++++|+.+|++++++ +|....++.++|.+|...|+. .
T Consensus 76 ~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 76 FYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 99999774 3455778999999999999999999999999999 788899999999999877643 3
Q ss_pred HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 348 ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 348 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+...+++++. ..+ ....++.+|.++...|++++|+.+|++++++.|+.
T Consensus 142 ~~~~~~~~~~~--------~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 142 KLETDYKKLSS--------PTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHC---C--------CCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHhC--------CCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 44555554431 122 23467788999999999999999999999887653
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=2e-16 Score=131.45 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=144.7
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPAS 244 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 244 (476)
..++.+|..+...|++++|+..|++++... .+++....+++.+|.++...|++++|+..|+++++..+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---- 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---- 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence 458899999999999999999999999863 22455667899999999999999999999999998776533
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
....+++.+|.++...|.. . ...+..++..+...|++++|+..|+++++...
T Consensus 76 -~~~~a~~~~g~~~~~~~~~-----~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P----- 127 (225)
T 2yhc_A 76 -NIDYVMYMRGLTNMALDDS-----A-----------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP----- 127 (225)
T ss_dssp -THHHHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTCT-----
T ss_pred -cHHHHHHHHHHHHHhhhhh-----h-----------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-----
Confidence 3345678888888775421 0 11123445555666777777777777666521
Q ss_pred CCchH--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHH
Q 011858 325 NHPSV--------------ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPE 390 (476)
Q Consensus 325 ~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 390 (476)
+++.. ......+|.+|...|++++|+..|+++++..+. .+....++..+|.++..+|+++
T Consensus 128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD------TQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC------CCccHHHHHHHHHHHHHcCCcH
Confidence 11111 122367899999999999999999999998644 3455688999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 011858 391 EALKLLQRAMKLLEDK 406 (476)
Q Consensus 391 ~A~~~~~~a~~~~~~~ 406 (476)
+|+..++++....+..
T Consensus 202 ~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 202 QAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhhCCCc
Confidence 9999999877655544
No 102
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.72 E-value=6.2e-16 Score=141.43 Aligned_cols=154 Identities=8% Similarity=-0.055 Sum_probs=144.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCch
Q 011858 124 LHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDP 203 (476)
Q Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 203 (476)
....+..+..+|+|++|+.++++++++.....+.+|+... .++.+||.+|..+|+|++|+.++++++++.++.+|.++|
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVL-RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3345566778999999999999999999999999999764 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 011858 204 RVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAM 278 (476)
Q Consensus 204 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 278 (476)
..+..+++||.+|..+|++++|+.++++++++.....+++|+..+....+++.++..++.+++|...|.++.+.+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654
No 103
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.3e-15 Score=149.77 Aligned_cols=295 Identities=17% Similarity=0.121 Sum_probs=173.2
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHHH-------Hhhhcc----CCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 81 LARDTIASGEGPSKALDYAIRASKSFER-------CAAAEA----EPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 81 ~a~~~~~~g~~~~~A~~~~~~al~~~~~-------~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
.|..+...| .+++|...|+++...... ...++. -.......+|+.+|.++...|++++|+..|.++-
T Consensus 1055 IA~Iai~lg-lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd- 1132 (1630)
T 1xi4_A 1055 IANIAISNE-LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD- 1132 (1630)
T ss_pred HHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-
Confidence 478888888 488888888775322111 000000 0123345678888888888888888888887761
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELC 229 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 229 (476)
++ ..+..+|.++...|++++|+++|..+.+..+. + .+...+|.+|.+++++++ ++.|
T Consensus 1133 ---------D~----say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------~---~Idt~LafaYAKl~rlee-le~f 1189 (1630)
T 1xi4_A 1133 ---------DP----SSYMEVVQAANTSGNWEELVKYLQMARKKARE------S---YVETELIFALAKTNRLAE-LEEF 1189 (1630)
T ss_pred ---------Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------c---cccHHHHHHHHhhcCHHH-HHHH
Confidence 11 34788888888888888888888887765311 0 111135555555555553 2222
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 230 KKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVF 309 (476)
Q Consensus 230 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 309 (476)
.+ .. .. ..+..+|..+...|+|++|..+|.++ ..|..+|.++..+|++++|++
T Consensus 1190 I~---------~~---n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1190 IN---------GP---NN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred Hh---------CC---CH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHH
Confidence 11 00 01 12445677777777777777776653 245666666666677777776
Q ss_pred HHHHHHHHHH--h---------------cCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHH
Q 011858 310 SYQKALTVFK--S---------------SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEI 372 (476)
Q Consensus 310 ~~~~al~~~~--~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 372 (476)
.++++..... + ..+......+..+..++..|...|.+++|+.+++.++.+-+ ..
T Consensus 1243 aarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler---------aH 1313 (1630)
T 1xi4_A 1243 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER---------AH 1313 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh---------hH
Confidence 6666533210 0 00000111234556888899999999999999999998732 34
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH--HhhcHHHHHHHHHHH
Q 011858 373 AGGLTEISAIYES--VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY--MVGRYEEARSSFESA 440 (476)
Q Consensus 373 ~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a 440 (476)
...+..+|.+|.+ .++..+++++|...+.+.+-. ..--..+...-.++. +-|+++.|+...-+.
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~----r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL----RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 6677778877765 455666666666554432211 001123333333444 236677666544433
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=4.9e-15 Score=123.00 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
...++.+|..+...|++++|+..|++++.. .+..+....+++.+|.++...|++++|+..|+++++.. ++++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence 345788999999999999999999988653 34555667789999999999999999999999999873 3344
Q ss_pred hHHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcCCCCCCChHH-----------HHHHHHH
Q 011858 328 SVASVFVRLADLYHR------------------TGKLRESKSYCENALRIYARPVPGTTAEE-----------IAGGLTE 378 (476)
Q Consensus 328 ~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~ 378 (476)
....+++.+|.++.. .|++++|+..|+++++..+... .... .......
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~---~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ---YTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT---THHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 556688899998876 5789999999999998865531 1111 1122357
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
+|.+|...|++++|+..|+++++..++.+ ....++..+|.+|..+|++++|+..++++..
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 89999999999999999999999876642 3447889999999999999999999987764
No 105
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=5e-17 Score=143.17 Aligned_cols=268 Identities=17% Similarity=0.168 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccC
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTR 155 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 155 (476)
.+|..+|..+...|+ +++|++.|.++-. ...+..++..+...|++++|+.+++.+++..+.
T Consensus 33 ~vWs~La~A~l~~g~-~~eAIdsfika~D----------------~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-- 93 (449)
T 1b89_A 33 AVWSQLAKAQLQKGM-VKEAIDSYIKADD----------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc--
Confidence 488999999999984 9999999966411 226777888888899999999999888774321
Q ss_pred CCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 011858 156 GADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEI 235 (476)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 235 (476)
+ .+...++.+|.+.|++.++.++++. |. ..++..+|..+...|+|++|..+|.++
T Consensus 94 ----~----~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 94 ----S----YVETELIFALAKTNRLAELEEFING-------------PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT---
T ss_pred ----c----hhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 1 2367788899999999998877742 22 238999999999999999999999977
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 236 HRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKAL 315 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 315 (476)
.. +..++.++..+|++++|++.++++ . ...+|...+.++...|+++.|..+....+
T Consensus 149 -----~n--------~~~LA~~L~~Lg~yq~AVea~~KA--------~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~ 204 (449)
T 1b89_A 149 -----SN--------FGRLASTLVHLGEYQAAVDGARKA--------N---STRTWKEVCFACVDGKEFRLAQMCGLHIV 204 (449)
T ss_dssp -----TC--------HHHHHHHHHTTTCHHHHHHHHHHH--------T---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT
T ss_pred -----hh--------HHHHHHHHHHhccHHHHHHHHHHc--------C---CchhHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 11 789999999999999999999987 1 25677888899999999999976665411
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH--cCCHHHHH
Q 011858 316 TVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES--VDEPEEAL 393 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~ 393 (476)
.++.. ...+..+|.+.|++++|+.++++++.+-+. ...++..+|.+|.+ .++..+.+
T Consensus 205 ---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~a---------h~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 205 ---------VHADE---LEELINYYQDRGYFEELITMLEAALGLERA---------HMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp ---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC---------CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH---------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 14443 446888999999999999999999987433 26677778877765 45666777
Q ss_pred HHHHHHHHHHH-----hccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 011858 394 KLLQRAMKLLE-----DKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFES 439 (476)
Q Consensus 394 ~~~~~a~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 439 (476)
+.|...+.+.+ ... ..|..+..+|...++++.|+...-+
T Consensus 264 ~~~~~~ini~k~~~~~~~~-------~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQA-------HLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTT-------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH-------HHHHHHHHHHHhhchHHHHHHHHHh
Confidence 77766555554 332 5677899999999999999875443
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=1.7e-15 Score=112.53 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+|..+..+.++|..++..|+|++|+.+|++++++ .|....++.++|.++..+|++++|+..|++++++.+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 46788889999999999999999999999999998 7888899999999999999999999999999998443
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVM 423 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (476)
...++..+|.++..+|++++|+..|++++++.|++. .++..++.+
T Consensus 80 ---------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-------~a~~~l~~~ 124 (126)
T 4gco_A 80 ---------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE-------EAREGVRNC 124 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH-------HHHHHHHHh
Confidence 367899999999999999999999999999988774 666666665
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=2.5e-14 Score=122.30 Aligned_cols=236 Identities=11% Similarity=-0.030 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhhccc
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLG--KFEEAVPALEKAISVPDV 153 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~ 153 (476)
.............|+..++|+..+.+++.+ .|+...+++..+.++...| ++++++.++++++...++
T Consensus 33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~-----------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINE-----------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 344555556667776567999999999997 6788889999999999999 999999999999998765
Q ss_pred cCCCchhHHHHHhHhhHHHHH----HHc---CChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHH--H
Q 011858 154 TRGADHALAKFSGYMQLGDTC----SML---GQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFD--K 224 (476)
Q Consensus 154 ~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~ 224 (476)
.. .+++..+.++ ... +++++++.++.++++. +|....++...+.+....|.++ +
T Consensus 102 ~y---------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~ 164 (306)
T 3dra_A 102 NY---------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAK 164 (306)
T ss_dssp CC---------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHH
T ss_pred cH---------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHH
Confidence 43 4577888887 666 7899999999999987 7788899999999999999998 9
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD------YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
++++++++++..+. ...++...+.+....++ ++++++++.+++. .++....+++.++.++
T Consensus 165 EL~~~~~~i~~d~~--------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~------~~p~n~SaW~y~~~ll 230 (306)
T 3dra_A 165 ELSFVDKVIDTDLK--------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV------KCPQNPSTWNYLLGIH 230 (306)
T ss_dssp HHHHHHHHHHHCTT--------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH------HCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH------hCCCCccHHHHHHHHH
Confidence 99999999976533 24457888888888887 8999999998876 3455567888999999
Q ss_pred HHcCCHHH-HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 299 LSLCRFDE-AVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 299 ~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
...|+..+ ...++.+++++- ...+....++..++.++.+.|+.++|+++|+.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99988554 444555555431 11356678999999999999999999999999876
No 108
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=5.7e-17 Score=142.79 Aligned_cols=258 Identities=18% Similarity=0.168 Sum_probs=116.1
Q ss_pred HcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHh
Q 011858 87 ASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSG 166 (476)
Q Consensus 87 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 166 (476)
..| +.++|.+++++.- ++ .+|..+|.++...|++++|++.|.++-. + ..
T Consensus 15 ~~~-~ld~A~~fae~~~-------------~~---~vWs~La~A~l~~g~~~eAIdsfika~D----------~----~~ 63 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCN-------------EP---AVWSQLAKAQLQKGMVKEAIDSYIKADD----------P----SS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCC-------------Ch---HHHHHHHHHHHHcCCHHHHHHHHHcCCC----------H----HH
Confidence 455 4777777777651 22 4899999999999999999999977421 1 24
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE 246 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 246 (476)
+..++..+...|++++|+.+++.+++.. +. ..+...++.+|.+.|++.++.++++. + .
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------p---n 121 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING----------P---N 121 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTC----------C----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC----------C---c
Confidence 7888889999999999999999888741 12 45677899999999999999888752 1 1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
..++..+|..+...|+|++|..+|.++ ..+..+|.++..+|++++|++.++++.
T Consensus 122 -~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------- 175 (449)
T 1b89_A 122 -NAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN----------- 175 (449)
T ss_dssp ----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----------
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----------
Confidence 125899999999999999999999965 357889999999999999999999982
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
...+|..++.++...|+++.|..+... +. .+ +.-+..+..+|.+.|++++|+.++++++.+.+..
T Consensus 176 --~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~-------~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 176 --STRTWKEVCFACVDGKEFRLAQMCGLH---IV-------VH---ADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT-------TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred --CchhHHHHHHHHHHcCcHHHHHHHHHH---HH-------hC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 256788899999999999999665553 11 12 2224468889999999999999999998765433
Q ss_pred cCCCchHHHHHHHHHHHHH--HhhcHHHHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFY--MVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~ 445 (476)
..++..+|.+|. +-++..+.++.|...+.+-+
T Consensus 241 -------~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 241 -------MGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 367777777776 56788888888877766554
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=1.2e-14 Score=119.26 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=146.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 011858 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA 260 (476)
Q Consensus 181 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 260 (476)
.+|+.+|+++.+. ....+++.+|.+|...+++++|+.+|+++.+. ....+++++|.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 4577888888763 34678999999999999999999999999763 124568899999998
Q ss_pred hC----CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 011858 261 KG----DYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS----LCRFDEAVFSYQKALTVFKSSKGDNHPSVASV 332 (476)
Q Consensus 261 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 332 (476)
+ ++++|+.+|+++.+ .....+++++|.+|.. .+++++|+.+|+++.+. ++......+
T Consensus 63 -~g~~~~~~~A~~~~~~A~~--------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a 127 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVE--------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDA 127 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHH
Confidence 7 99999999999854 2346688999999998 89999999999999876 211145889
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 011858 333 FVRLADLYHR----TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV-D-----EPEEALKLLQRAMKL 402 (476)
Q Consensus 333 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a~~~ 402 (476)
+.+||.+|.. .+++++|+.+|+++.+. .. ...+++.+|.+|... | ++++|+.+|+++.+.
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~---------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR---------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC---------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999999999 88999999999999986 11 134789999999864 3 899999999999876
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=3.5e-15 Score=118.64 Aligned_cols=169 Identities=17% Similarity=0.034 Sum_probs=134.8
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
|.....++.+|..+...|+ +++|+..|+++++. +|....+++.+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDE-----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp ---CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHH-----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred CCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH-----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 3445578999999999994 99999999999986 46667899999999999999999999999998875
Q ss_pred cccCCCchhHHHHHhHhhHHHHH-HHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTC-SMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCK 230 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (476)
+ . +. ....++.+. ...++..+|+..++++++. +|....+++.+|.++...|++++|+..|+
T Consensus 71 p-~-----~~----~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 71 Q-D-----NS----YKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp C-C-----HH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-C-----hH----HHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4 1 11 122333332 2334556689999999987 67778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 231 KTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 231 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
++++..+...+ ..++..++.++...|+.++|+..|++++.
T Consensus 133 ~~l~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 133 NILKVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99887544322 23478899999999999999999998865
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=1.6e-14 Score=107.59 Aligned_cols=110 Identities=19% Similarity=0.365 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
.+.+.++.++|..++..|+|++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 345778889999999999999999999999998 78889999999999999999999999999999998764
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
.......+.++..+|.++..+|++++|+++|++++...+
T Consensus 76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 445666788999999999999999999999999998644
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=2.3e-14 Score=117.53 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC
Q 011858 223 DKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC 302 (476)
Q Consensus 223 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 302 (476)
.+|+.+|+++.+. ....+++.+|.+|...+++++|+.+|+++.+. ....+++++|.+|.. +
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------g~~~a~~~lg~~y~~-~ 63 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------GDGDALALLAQLKIR-N 63 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHTTS-S
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc-C
Confidence 3567777777653 22456889999999999999999999998652 235788999999998 7
Q ss_pred ----CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 303 ----RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR----TGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 303 ----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+... ......
T Consensus 64 g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-------~~~~~~ 126 (212)
T 3rjv_A 64 PQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-------SDAAVD 126 (212)
T ss_dssp TTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-------SHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-------CcchHH
Confidence 999999999999653 346789999999988 8999999999999987521 113478
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh-h-----cHHHHHHHHHHHHHH
Q 011858 375 GLTEISAIYES----VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV-G-----RYEEARSSFESAIAK 443 (476)
Q Consensus 375 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~ 443 (476)
+++.+|.+|.. .+++++|+.+|+++.+. +... .+++.||.+|... | ++++|+.+|+++.+.
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~-------~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG-------YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT-------HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH-------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 89999999999 88999999999999876 2222 5788999999865 3 899999999999864
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=1.3e-14 Score=120.75 Aligned_cols=210 Identities=12% Similarity=0.012 Sum_probs=170.1
Q ss_pred hHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHH-------HHHHHHhccHHHHHHHHHHHHHHHHh
Q 011858 166 GYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYL-------AEAHVQAMQFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 166 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~ 238 (476)
.++..|.-+ ..+++..|...|.+++++ +|..+++|..+ +.++...+++.+++..+.+.+.+.+.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~ 79 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 356666665 589999999999999998 88999999999 89999999999999999999987766
Q ss_pred cCCCCch-------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH
Q 011858 239 HSEPASL-------------EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFD 305 (476)
Q Consensus 239 ~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 305 (476)
....... ....+...++.++...|++++|.+.|...+. ..+... ..+.+|.++...++++
T Consensus 80 ~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~------~~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV------AGSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp GGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC------TTCHHH-HHHHHHHHHHHTTCHH
T ss_pred hhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCchH-HHHHHHHHHHHcCCHH
Confidence 5443111 1134456678999999999999999986532 345555 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC-hHHHHHHHHHHHHHH
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPS-VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT-AEEIAGGLTEISAIY 383 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~la~~~ 383 (476)
+|+.+|+++... . ++. ...+++++|.++..+|++++|+.+|++++. +.. +.....+.+.+|.++
T Consensus 153 dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-------g~~~P~~~~da~~~~glaL 218 (282)
T 4f3v_A 153 DVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-------SPAGEACARAIAWYLAMAR 218 (282)
T ss_dssp HHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------STTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-------CCCCccccHHHHHHHHHHH
Confidence 999999866543 1 222 256899999999999999999999999984 222 222577899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHh
Q 011858 384 ESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 384 ~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
..+|+.++|...|++++...+.
T Consensus 219 ~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 219 RSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999987654
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.61 E-value=1.2e-13 Score=118.09 Aligned_cols=221 Identities=10% Similarity=-0.016 Sum_probs=182.9
Q ss_pred ChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcC--ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011858 136 KFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG--QVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLA 213 (476)
Q Consensus 136 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 213 (476)
..++|+..+.+++.+.+... .+++..+.++...| ++++++.++.+++.. +|....+++..+
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~---------taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~ 110 (306)
T 3dra_A 48 YSERALHITELGINELASHY---------TIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQ 110 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcHHH---------HHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHH
Confidence 34689999999999976332 56899999999999 999999999999987 677778888888
Q ss_pred HHH----HHh---ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHcCCC
Q 011858 214 EAH----VQA---MQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYE--AALEHLVLASMAMIANGQD 284 (476)
Q Consensus 214 ~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~ 284 (476)
.++ ... +++++++.++.++++..++ ...++...+.+....|.++ +++++++++++ .+
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk--------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~------~d 176 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK--------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID------TD 176 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH------HC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH------hC
Confidence 888 666 7899999999999986544 3455888899999999998 99999998876 34
Q ss_pred hhHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH-HHHHHHHHH
Q 011858 285 NEVAAIDVSIGNIYLSLCR------FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE-SKSYCENAL 357 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~ 357 (476)
+....++...+.++...++ ++++++++.+++.. +|....+|+.++.++...|+..+ ...++++++
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5556788999999999887 99999999999998 88899999999999999998655 445666666
Q ss_pred HHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 358 RIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
.+.. ..+....++..++.++.+.|+.++|+++|+.+.+
T Consensus 249 ~~~~------~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEK------DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGG------TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccC------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5421 1123366899999999999999999999999875
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.61 E-value=2.5e-14 Score=106.25 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
+..+..+.++|..++..|++++|++.|++++.+ .+....++.++|.++..+|++++|+..+++++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL------- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-------
Confidence 567888999999999999999999999999874 3455778999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAI 382 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 382 (476)
++....++.++|.++..+|++++|+..|++++++.+. ...++..++.+
T Consensus 77 -~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---------~~~a~~~l~~~ 124 (126)
T 4gco_A 77 -DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS---------NEEAREGVRNC 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC---------CHHHHHHHHHh
Confidence 7888999999999999999999999999999998543 24566666654
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=5.3e-15 Score=117.64 Aligned_cols=164 Identities=15% Similarity=0.065 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.. .| ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--------YQ-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--------GC-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--------cC-Ch
Confidence 678899999999999999999998763 3455778999999999999999999999998776 33 33
Q ss_pred HHHHHHHHHH-HHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC
Q 011858 331 SVFVRLADLY-HRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ 409 (476)
Q Consensus 331 ~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 409 (476)
.....++.+. ...++..+|+..+++++++.+. ...++..+|.++...|++++|+..|+++++..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-- 142 (176)
T 2r5s_A 74 SYKSLIAKLELHQQAAESPELKRLEQELAANPD---------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-- 142 (176)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--
Confidence 4444445443 2334556689999999998543 367899999999999999999999999998765431
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
...++..+|.++...|+.++|+..|++++..
T Consensus 143 ---~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 143 ---DGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ---TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1257889999999999999999999999864
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.60 E-value=2e-14 Score=123.89 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
...+..+|..+...|++++|+..|++++.. .+....++..+|.++...|++++|+..+++++.. .|
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--------~p 182 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--------DQ 182 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------GC
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------hc
Confidence 445788999999999999999999998763 3445678999999999999999999999999876 45
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
.........+..+...++.++|+..+++++...+. ...++..+|.++...|++++|+..|+++++..+...
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~---------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE---------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc---------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 66667777788888999999999999999998543 377899999999999999999999999999876651
Q ss_pred CCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 408 GQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
...++..++.++...|+.++|...|++++..
T Consensus 254 -----~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 -----DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp -----GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 1278889999999999999999999999864
No 118
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=2.9e-14 Score=106.19 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+.+.++.++|..+...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 456788899999999999999999999999998543 36789999999999999999999999999999998
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.......+.++..+|.++..+|++++|+++|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677778889999999999999999999999999874
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.60 E-value=1.1e-13 Score=115.37 Aligned_cols=222 Identities=13% Similarity=-0.016 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHH-------HHHHHhcCChhHHHHHHHHh
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVL-------AAIYCSLGKFEEAVPALEKA 147 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~a 147 (476)
...++..|.-+ ..+ ++..|...|.+++++ +|..+.+|..+ +.++...+++.+++..+++.
T Consensus 7 ~~~~~~~~~~~-~~~-d~~~A~~~F~~a~~~-----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~ 73 (282)
T 4f3v_A 7 LASLFESAVSM-LPM-SEARSLDLFTEITNY-----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS 73 (282)
T ss_dssp HHHHHHHHHHH-TTT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT
T ss_pred HHHHHHHHhcc-cCC-CHHHHHHHHHHHHHh-----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44567777776 466 599999999999997 68888899999 89999999999999999999
Q ss_pred hhhccccCCCchh-H-----------HHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 011858 148 ISVPDVTRGADHA-L-----------AKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEA 215 (476)
Q Consensus 148 l~~~~~~~~~~~~-~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 215 (476)
+.+.+........ . ..-.+...++.++...|+|++|.+.|..++.. .|... ..+.+|.+
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l 144 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVV 144 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHH
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHH
Confidence 9987644332221 0 01244667899999999999999999887753 45555 88999999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh-HHHHHHHH
Q 011858 216 HVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE-VAAIDVSI 294 (476)
Q Consensus 216 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~l 294 (476)
+...++|++|+.+|+++.... .......+++++|.++..+|++++|+.+|++++. ....+. ...+.+++
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYL 214 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHH
Confidence 999999999999998653321 1112345789999999999999999999998852 222133 67789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLA 337 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 337 (476)
|.++..+|+.++|...|++++.. +|. ..+...|.
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL~ 248 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTT--------HPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence 99999999999999999999998 666 55555543
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=5.1e-16 Score=136.95 Aligned_cols=163 Identities=16% Similarity=0.084 Sum_probs=138.1
Q ss_pred HcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC-------chHHH
Q 011858 176 MLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA-------SLEES 248 (476)
Q Consensus 176 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~ 248 (476)
..+++++|+..++++++. .+..+.++..+|.+++..|++++|+.+|++++.+.+...... .....
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 467788899888888776 567788999999999999999999999999999887653211 11235
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
.++.++|.++..+|++++|+.++++++.+ .+....+++++|.+|..+|++++|+.+|++++++ .|.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 262 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPN 262 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCC
Confidence 77999999999999999999999999875 3445778999999999999999999999999999 777
Q ss_pred HHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHH
Q 011858 329 VASVFVRLADLYHRTGKLRES-KSYCENALRIY 360 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~ 360 (476)
...++..++.++..+|++++| ...|++++...
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999998 55677766543
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.60 E-value=1.8e-14 Score=124.21 Aligned_cols=171 Identities=16% Similarity=0.016 Sum_probs=148.1
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
|.....++.+|..+...|+ +++|+..|+++++. +|+...+++.+|.++...|++++|+..+++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQL-----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHh-----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 6677889999999999995 99999999999986 56778899999999999999999999999998876
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
+. .. ......+..+...++.++|+..+++++.. +|....+++.+|.++...|++++|+..|++
T Consensus 182 p~-----~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 182 QD-----TR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp CS-----HH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cc-----hH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 41 11 23566777788899999999999999987 778889999999999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 232 TLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 232 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
+++..+... ...++..++.++...|+.++|...|++++..
T Consensus 245 ~l~~~p~~~------~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 245 HLRXDLTAA------DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHCTTGG------GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhcccccc------cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 999865532 2455889999999999999999999988654
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=2.8e-15 Score=114.58 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=96.2
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
+|....+++.+|.++...|++++|+.+|++++.+.+. ...++..+|.++..+|++++|+..|++++++.+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 7888999999999999999999999999999998543 3778999999999999999999999999999988
Q ss_pred ccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
.+ .+++++|.+|..+|++++|+.+|++++++.
T Consensus 103 ~~-------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 DY-------TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CC-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Cc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 76 899999999999999999999999999875
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.59 E-value=1.9e-14 Score=137.23 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=101.8
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 011858 261 KGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLY 340 (476)
Q Consensus 261 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 340 (476)
.|++++|+..+++++.. .+....++..+|.++...|++++|+.+|++++++ .+....++.++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVR 67 (568)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 36777777777777552 3334567777888888888888888888888776 566677788888888
Q ss_pred HHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 011858 341 HRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARM 420 (476)
Q Consensus 341 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (476)
..+|++++|+.+|++++++.+. ...++..+|.++...|++++|+.+|++++++.+... .++..+
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l 131 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE---------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP-------YITAQL 131 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHH
Confidence 8888888888888888876432 256777788888888888888888888877765543 677778
Q ss_pred HHHHHHh---hcHHHHHHHHHHHHHHH
Q 011858 421 GVMFYMV---GRYEEARSSFESAIAKL 444 (476)
Q Consensus 421 ~~~~~~~---g~~~~A~~~~~~a~~~~ 444 (476)
|.++... |++++|.+.++++++..
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8888888 88888888888877653
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=2.6e-13 Score=106.72 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP 365 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 365 (476)
..+..+..+|.++...|++++|+.+|+++++. .+....++..+|.++...|++++|+.++++++++.+.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 34677889999999999999999999999998 6667889999999999999999999999999998543
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 366 GTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
...++..+|.++...|++++|+.+|++++++.+... .......++..+...|++++|+.+++++..++.
T Consensus 80 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 80 ------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-----DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 267899999999999999999999999998866543 122335566668899999999999999998887
Q ss_pred Hhcc
Q 011858 446 ASGE 449 (476)
Q Consensus 446 ~~~~ 449 (476)
....
T Consensus 149 ~~~~ 152 (166)
T 1a17_A 149 SLDI 152 (166)
T ss_dssp HCCC
T ss_pred ccch
Confidence 7654
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.58 E-value=2.1e-14 Score=136.90 Aligned_cols=157 Identities=10% Similarity=0.006 Sum_probs=123.2
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
.|++++|+..++++++..+. ...++..+|.++...|++++|++++++++. ..+....++.++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--------DFVAWLMLADAELGMGDTTAGEMAVQRGLA------LHPGHPEAVARLGRVR 67 (568)
T ss_dssp -------------------C--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------TSTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHH
Confidence 47899999999999887543 245689999999999999999999999876 3455577899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTE 378 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (476)
...|++++|+.++++++++ .+....++.++|.++...|++++|+.+|++++++.+. ...++..
T Consensus 68 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~ 130 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE---------EPYITAQ 130 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHH
Confidence 9999999999999999998 6777899999999999999999999999999998543 2578899
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHHHHhc
Q 011858 379 ISAIYESV---DEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 379 la~~~~~~---g~~~~A~~~~~~a~~~~~~~ 406 (476)
+|.++..+ |++++|+..++++++..+..
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999999 99999999999999987765
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.57 E-value=8.1e-14 Score=106.43 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=99.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
..+|....+++.+|.++...|++++|+.+|++++.+ +|....+|.++|.++..+|++++|+..|++++++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 357788899999999999999999999999999999 888899999999999999999999999999999965
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.. ..+++++|.+|..+|++++|+.+|++++++.++.
T Consensus 102 ~~---------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 102 ND---------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp SC---------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred CC---------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 42 5689999999999999999999999999986543
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=2.4e-13 Score=102.73 Aligned_cols=131 Identities=27% Similarity=0.434 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCC
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
.++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------ 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------
Confidence 35778999999999999999999999887 4556788999999999999999999999999987432
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++..
T Consensus 68 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 ---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 25678899999999999999999999999876554 267889999999999999999999999864
No 128
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=3.9e-13 Score=101.00 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD----NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.+..+.++|..++..|+|++|+..|++++++....... ..+....+|.++|.++..+|++++|+..|+++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 46677899999999999999999999999995431000 01124559999999999999999999999999998333
Q ss_pred CCCCCChHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHH
Q 011858 363 PVPGTTAEEIAGGL----TEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIE 417 (476)
Q Consensus 363 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (476)
. +.-.+....+| +++|.++..+|++++|+..|++++++.++..+....+..+.
T Consensus 90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2 22233456777 99999999999999999999999999999876665554443
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=2.6e-13 Score=119.68 Aligned_cols=148 Identities=15% Similarity=0.213 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-------CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD-------NHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
+..+.++..+|.+++..|++++|+.+|++++++....... ..+....++.++|.+|..+|++++|+.+|++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677888888888888888888888888873211000 011226899999999999999999999999999
Q ss_pred HHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHH-HHH
Q 011858 358 RIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEA-RSS 436 (476)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~ 436 (476)
++.+. ...+++.+|.++..+|++++|+.+|++++++.+... .++..++.++..+|++++| ...
T Consensus 224 ~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-------~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 224 ELDSN---------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK-------AAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 98543 367899999999999999999999999999977664 7889999999999999999 567
Q ss_pred HHHHHHHHHHhc
Q 011858 437 FESAIAKLRASG 448 (476)
Q Consensus 437 ~~~a~~~~~~~~ 448 (476)
|++++..+....
T Consensus 288 ~~~~~~~~~~~~ 299 (336)
T 1p5q_A 288 YANMFERLAEEE 299 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc
Confidence 888877665543
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=1.1e-13 Score=113.97 Aligned_cols=143 Identities=18% Similarity=0.166 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 247 ESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
.+..++.+|.++...|++++|+..|++++ .. ...++.++|.++...|++++|+.+|++++.+ .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34457889999999999999999999873 11 3568999999999999999999999999998 6
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC-------CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV-------PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
+....++.++|.++...|++++|+.+|++++++.+... .....+....++..+|.++...|++++|+.+|+++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77789999999999999999999999999999765420 00023345688999999999999999999999999
Q ss_pred HHHHHhc
Q 011858 400 MKLLEDK 406 (476)
Q Consensus 400 ~~~~~~~ 406 (476)
+++.+..
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9876543
No 131
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.54 E-value=4.5e-13 Score=120.93 Aligned_cols=135 Identities=11% Similarity=-0.001 Sum_probs=124.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhH
Q 011858 126 VLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRV 205 (476)
Q Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 205 (476)
....-+..+|++++|+..+++++++.....+++|+.. +.++.++|.+|..+|+|++|+.++++++++.++.+|.++|..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~-~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQ-LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 3344566789999999999999999998999999876 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 011858 206 GETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAK 261 (476)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 261 (476)
+..+++||.+|..+|++++|+.++++++++.....+++|+....++.+|+.+...+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888877544
No 132
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.53 E-value=4e-13 Score=120.91 Aligned_cols=124 Identities=10% Similarity=-0.054 Sum_probs=115.2
Q ss_pred HHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 011858 131 YCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCR 210 (476)
Q Consensus 131 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 210 (476)
....|+|++|+.++++++++.....+++|+... .++.++|.+|..+|+|++|+.++++++++.++.+|.++|..+..++
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYML-HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 345789999999999999999999999999764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMA 255 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 255 (476)
+||.+|..+|++++|+.+|++++++.....+++|+....+..+|.
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999988877666553
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.53 E-value=5.8e-13 Score=100.63 Aligned_cols=132 Identities=27% Similarity=0.377 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchH
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSV 329 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 329 (476)
++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.. .+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCc
Confidence 4788999999999999999999998763 2233567888999999999999999999999987 5556
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 330 ASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 330 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++...+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 778999999999999999999999999987433 256788999999999999999999999987654
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.9e-13 Score=98.25 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.+..+..+|..++..|++++|+.+|++++++ .|....++.++|.++..+|++++|+..+++++++.+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---- 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----
Confidence 4667889999999999999999999999998 6777899999999999999999999999999998543
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY 425 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (476)
...++..+|.++..+|++++|+..|++++++.++. ...+....++..++.+..
T Consensus 71 -----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 71 -----FVRAYIRKATAQIAVKEYASALETLDAARTKDAEV-NNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc-CCchhHHHHHHHHHHHHH
Confidence 26789999999999999999999999999999654 222222355555555543
No 135
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.52 E-value=3e-13 Score=121.74 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=110.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTE 378 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (476)
...|+|++|+..+++++++.++.+|++++..+.++.+||.+|..+|+|++|+.++++++++.++.. |.+++.++..+++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-PVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999886 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHH
Q 011858 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQ-QSTIAGIEARM 420 (476)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~l 420 (476)
+|.+|..+|++++|+.+|++|+++.....|. ++....+..+|
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9999999999999999999999999988774 45555554443
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.52 E-value=1.4e-13 Score=105.43 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=98.3
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
...+.....++.+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++.+.+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356777889999999999999999999999999998 778889999999999999999999999999999854
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
. ...+++.+|.++..+|++++|+.+|++++++.+..+
T Consensus 87 ~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 87 X---------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp T---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred C---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3 256789999999999999999999999999988754
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.51 E-value=4.3e-14 Score=121.37 Aligned_cols=196 Identities=10% Similarity=0.070 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
.+..+..+|..++..|++++|+..|++++...+. +. .++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VA----VYYTNRALCYLKMQQPEQALADCRRALEL------ 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 3567899999999999999999999999998652 22 56899999999999999999999999986
Q ss_pred CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 011858 200 ETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 279 (476)
+|....+++.+|.++...|++++|+..|++++++.+........ .. +..+ . ..++..+..... .
T Consensus 68 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-~~--~~~~--~------~~~~~~~~~~~~---~ 131 (281)
T 2c2l_A 68 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD-DI--PSAL--R------IAKKKRWNSIEE---R 131 (281)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS-HH--HHHH--H------HHHHHHHHHHHH---T
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH-HH--HHHH--H------HHHHHHHHHHHH---H
Confidence 66778899999999999999999999999999999876543211 11 1111 1 111111111110 1
Q ss_pred HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT-GKLRESKSYCENALR 358 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 358 (476)
........ ...++.++ .|++++|++.++++++. .+........++.++... +.+++|...|.++.+
T Consensus 132 ~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 132 RIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 12223332 33344443 68999999999998876 566667777777777665 678889999988765
Q ss_pred H
Q 011858 359 I 359 (476)
Q Consensus 359 ~ 359 (476)
.
T Consensus 199 ~ 199 (281)
T 2c2l_A 199 K 199 (281)
T ss_dssp T
T ss_pred c
Confidence 4
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=1e-13 Score=106.29 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011858 309 FSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 309 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (476)
..|++++.+ .|.....++.+|.++...|++++|+..|++++.+.+. ...++..+|.++...|+
T Consensus 8 ~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 8 GTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---------DSRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---------cHHHHHHHHHHHHHHhh
Confidence 345666655 7888999999999999999999999999999998543 26788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 389 PEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 389 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
+++|+.+|++++.+.+..+ .+++.+|.+|...|++++|+.+|++++++.+.
T Consensus 71 ~~~A~~~~~~al~l~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 71 YDLAIHSYSYGAVMDIXEP-------RFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHHSTTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 9999999999999988775 78999999999999999999999999988754
No 139
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.50 E-value=3.8e-13 Score=121.40 Aligned_cols=133 Identities=12% Similarity=0.036 Sum_probs=121.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
..-+..+|++++|+..+++++++.++..|.+++..+.++.++|.+|..+|+|++|+.++++++.+.++.. +.+++..+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CCCChHHHH
Confidence 3445678999999999999999999999999999999999999999999999999999999999999876 889999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHhh
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG-QQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 428 (476)
.++++|.+|..+|++++|+.+|++|+++.....| +++....++.+|+.+...++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877 56777788888888776543
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.50 E-value=4.8e-13 Score=110.12 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
...++.+|.++...|++++|+..|++++. + ...++.++|.++...|++++|+.+|++++.+.+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----- 69 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----- 69 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 44578899999999999999999998841 1 3579999999999999999999999999998533
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC---------CCchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG---------QQSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
...++..+|.++...|++++|+.+|+++++..+.... .......++..+|.++...|++++|+.+|+
T Consensus 70 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 70 ----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3678999999999999999999999999998776520 334456889999999999999999999999
Q ss_pred HHHHHHH
Q 011858 439 SAIAKLR 445 (476)
Q Consensus 439 ~a~~~~~ 445 (476)
+++++.+
T Consensus 146 ~al~~~p 152 (213)
T 1hh8_A 146 LATSMKS 152 (213)
T ss_dssp HHHTTCC
T ss_pred HHHHcCc
Confidence 9997654
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=2.1e-12 Score=101.44 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN 325 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 325 (476)
..+..+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 34566889999999999999999999999774 2334678899999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.+....++..+|.++...|++++|+.++++++++.+.. . .......++..+...|++++|+..+.++..+...
T Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD------K-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 66778899999999999999999999999999985431 1 2334456666688899999999999999888876
Q ss_pred c
Q 011858 406 K 406 (476)
Q Consensus 406 ~ 406 (476)
.
T Consensus 150 ~ 150 (166)
T 1a17_A 150 L 150 (166)
T ss_dssp C
T ss_pred c
Confidence 5
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=7.5e-14 Score=113.37 Aligned_cols=167 Identities=16% Similarity=0.097 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch--
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS-- 328 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 328 (476)
....+......|+++++.+.+..... .....+..+..+|..++..|++++|+.+|++++.+.... .+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~ 78 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDE------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQI 78 (198)
T ss_dssp ---------------CCCSGGGCCHH------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHH------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhh
Confidence 34456667777888888877764422 234557788999999999999999999999999874321 00000
Q ss_pred --------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 329 --------VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 329 --------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
...++.++|.++...|++++|+.++++++.+.+. ...+++.+|.++..+|++++|+.+|++++
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---------NVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1378999999999999999999999999998533 36789999999999999999999999999
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHH-HHHHHHH
Q 011858 401 KLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEAR-SSFESAI 441 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~ 441 (476)
++.+... .++..++.++...++..++. ..|.+..
T Consensus 150 ~~~p~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 150 SLNPNNL-------DIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHSTTCH-------HHHHHHHHHHHHHHHHHC----------
T ss_pred HHCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9977664 78889999999999988877 4444443
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=2e-12 Score=101.32 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=97.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.....+..+..+|.++...|++++|+.+|++++++ .+....++.++|.+|...|++++|+.+|++++++.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 45567888999999999999999999999999998 6777899999999999999999999999999998543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
...++..+|.++..+|++++|+.+|++++++.+...
T Consensus 78 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 78 ---------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred ---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 367899999999999999999999999999988764
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=2.8e-12 Score=97.71 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
...+.....++.+|..+...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+.+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356777888999999999999999999999999998 778889999999999999999999999999999854
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
. ...++..+|.++..+|++++|+.+|++++++.+..+
T Consensus 84 ~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 84 N---------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp T---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred C---------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 3 256789999999999999999999999999998764
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2e-12 Score=96.29 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 119 DYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
..+..+..+|..++..|++++|+..|++++.+.+.. ..++..+|.++...|++++|+..|++++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------ARGYSNRAAALAKLMSFPEAIADCNKAIEK----- 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 456789999999999999999999999999987532 156899999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 011858 199 GETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALIC 258 (476)
Q Consensus 199 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 258 (476)
+|....++..+|.++...|++++|+..|++++++.+...... ....++..++.+.
T Consensus 68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~ 122 (126)
T 3upv_A 68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKAS 122 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHH
Confidence 667788999999999999999999999999999986654421 2233344444443
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.47 E-value=3.8e-12 Score=95.66 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 329 VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG---TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.+..+.++|..+...|++++|+..|++++++.+..... ...+....+|.++|.++..+|++++|+..|+++++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 46678899999999999999999999999998762100 112234569999999999999999999999999999544
Q ss_pred ccCCCchHHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 406 KPGQQSTIAGIE----ARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 406 ~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
.....+....+| +++|.++..+|++++|+.+|++++++.++....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 433444556788 999999999999999999999999998776543
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-12 Score=97.96 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
.+.....+..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~- 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT- 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-
Confidence 4556777888888888888888888888888776 5555778888888888888888888888888887432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhc
Q 011858 364 VPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGR 429 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (476)
...++..+|.++...|++++|+.+|++++...+... .++..++.++..+|+
T Consensus 83 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 --------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK-------EAADGYQRCMMAQYN 133 (133)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT-------HHHHHHHHHHHHHTC
T ss_pred --------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch-------HHHHHHHHHHHHhcC
Confidence 256778888888888888888888888888766654 667777887777664
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.46 E-value=2.7e-13 Score=110.03 Aligned_cols=162 Identities=12% Similarity=0.034 Sum_probs=120.4
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCch-
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASL- 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 245 (476)
....+......|+++++.+.+...... .+..+..+..+|..++..|++++|+.+|++++.+.+...+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp ---------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 445666777888899988888766543 35567889999999999999999999999999987664432110
Q ss_pred -------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 246 -------EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 246 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
....++.++|.++...|++++|+.++++++.+ .+....+++.+|.++...|++++|+.+|++++++
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 151 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence 11367899999999999999999999999875 3445678899999999999999999999999998
Q ss_pred HhcCCCCCchHHHHHHHHHHHHHHcCChhHHH
Q 011858 319 KSSKGDNHPSVASVFVRLADLYHRTGKLRESK 350 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 350 (476)
.|....++..++.++...++..++.
T Consensus 152 -------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 -------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6777889999999999888877776
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=2.5e-12 Score=96.46 Aligned_cols=123 Identities=21% Similarity=0.286 Sum_probs=99.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 284 DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
.+.....+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence 4556677888888888899999999999888887 5556778888899998999999999999988887432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcH
Q 011858 364 VPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRY 430 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (476)
...++..+|.++...|++++|+.+|+++++..+... .++..++.++...|++
T Consensus 79 --------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 --------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE-------TYKSNLKIAELKLREA 130 (131)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHTTC
T ss_pred --------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch-------HHHHHHHHHHHHHhcC
Confidence 256788888889999999999999998888766553 6777888888887764
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.44 E-value=5.2e-11 Score=102.30 Aligned_cols=227 Identities=11% Similarity=0.056 Sum_probs=174.4
Q ss_pred HhcCChh-HHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCC----------hhhHHHHHHHHHHHHHHHhcC
Q 011858 132 CSLGKFE-EAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ----------VDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 132 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 200 (476)
...|+++ +|+.++.+++.+.+... .+++..+.++...+. +++++.++..++..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~y---------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFA---------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCH---------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH---------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-------
Confidence 4567776 79999999999976432 457777777776665 57788888888775
Q ss_pred CchhHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH
Q 011858 201 TDPRVGETCRYLAEAHVQAMQ--FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD-YEAALEHLVLASMA 277 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~ 277 (476)
+|....++...+.++...|+ +++++.++.++++..+. ...+|...+.+....|. ++++++++.+++.
T Consensus 104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr--------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~- 173 (331)
T 3dss_A 104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--------NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT- 173 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-
Confidence 77888899999999999994 99999999999987644 24558888999999998 6999999998876
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSL--------------CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT 343 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 343 (476)
.++....+++.++.++... +.++++++++.+++.+ +|....+|+.+..++...
T Consensus 174 -----~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 174 -----RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp -----HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHSS
T ss_pred -----HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence 3445566788888888776 5689999999999998 788888888776666555
Q ss_pred -----------CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhc
Q 011858 344 -----------GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIY---ESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 344 -----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+.++++++++++++++.+. . ..++..++.+. ...|..++...++.+.+++.|..
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle~~pd------~---~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQELEPE------N---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHCTT------C---HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhhCcc------c---chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 3578999999999998543 1 22333333322 23577889999999998887765
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.44 E-value=3.4e-11 Score=103.49 Aligned_cols=225 Identities=10% Similarity=-0.051 Sum_probs=174.2
Q ss_pred HHHcCChh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHhcCCC
Q 011858 174 CSMLGQVD-RSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ----------FDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 174 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 242 (476)
....|+++ +|+.++.+++.+ +|....+++..+.++...+. +++++.+++.++...++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---- 106 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---- 106 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC----
Confidence 34567777 789999999887 78888889999988888776 68888888888876543
Q ss_pred CchHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 011858 243 ASLEESADRRLMALICEAKGD--YEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCR-FDEAVFSYQKALTVFK 319 (476)
Q Consensus 243 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~ 319 (476)
...+|...+.++...++ +++++.++.+++. .++....++...+.+....|. ++++++++.++++.
T Consensus 107 ----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-- 174 (331)
T 3dss_A 107 ----SYGTWHHRCWLLSRLPEPNWARELELCARFLE------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 174 (331)
T ss_dssp ----CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred ----CHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence 34558888999999994 8999999999876 345557788999999999998 69999999999998
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRT--------------GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
++....+|...+.++... +.++++++++.+++.+.+.. ..+++.+..++..
T Consensus 175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d---------~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND---------QSAWFYHRWLLGA 239 (331)
T ss_dssp ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHS
T ss_pred ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHh
Confidence 888899999999998887 45889999999999985442 4556555444444
Q ss_pred c-----------CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHHH
Q 011858 386 V-----------DEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFY---MVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 386 ~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~ 444 (476)
. +.++++++++++++++.+++. .++..++.+.. ..|..++...++.+.+++-
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~-------w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQELEPENK-------WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhhCcccc-------hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3 457899999999998887652 34444433322 3567788888888887653
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.43 E-value=3.8e-12 Score=99.75 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
..+..+..++.+|.+++..|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------PIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 567788899999999999999999999999999987532 256899999999999999999999999998
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
+|....+++.+|.++...|++++|+.+|++++++.+....
T Consensus 75 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 ------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 5677889999999999999999999999999999866543
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=1.3e-11 Score=93.43 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP 365 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 365 (476)
..+..+..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++|+.++++++.+.+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--- 75 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--- 75 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---
Confidence 44678899999999999999999999999998 6777899999999999999999999999999998543
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhc
Q 011858 366 GTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGR 429 (476)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (476)
...++..+|.++...|++++|+.+|++++.+.+....... ..+...+..+......
T Consensus 76 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~--~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 76 ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG--DDIPSALRIAKKKRWN 131 (137)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT--THHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999988422111 2444455555444433
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.42 E-value=4.8e-12 Score=96.37 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH
Q 011858 116 PSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 195 (476)
.+|.....++.+|..+...|++++|+..|++++...+. +. .++..+|.++...|++++|+.+|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-----DA----RYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-----cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 46888889999999999999999999999999998652 22 45899999999999999999999999998
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Q 011858 196 EALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHS 240 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 240 (476)
+|....+++.+|.++...|++++|+.+|++++++.+...
T Consensus 82 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 82 ------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 566677899999999999999999999999999987543
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=5.7e-12 Score=98.48 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ------------DNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
..+..+...|..++..|++++|+..|.+++.+...... .+....++.++|.+|...|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45667899999999999999999999999988654321 455678999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 314 ALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 314 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
++++ +|....+++.+|.+|..+|++++|+..|++++.+.+
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 9999 788899999999999999999999999999999854
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.41 E-value=1e-11 Score=107.10 Aligned_cols=229 Identities=9% Similarity=-0.049 Sum_probs=171.2
Q ss_pred hcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcC-ChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 011858 133 SLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLG-QVDRSIGCYEEGLKIQIEALGETDPRVGETCRY 211 (476)
Q Consensus 133 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 211 (476)
..+..++|+.++++++.+.+... .+++..+.++...| .+++++.++.+++.. +|....++..
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~y---------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~h 128 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHY---------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHH 128 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhH---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence 34556789999999999976432 56888999999999 599999999999876 6778889999
Q ss_pred HHHHHHHh-c-cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHc
Q 011858 212 LAEAHVQA-M-QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYE--------AALEHLVLASMAMIAN 281 (476)
Q Consensus 212 la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a~~~~~~~ 281 (476)
.+.++... + ++++++.++.++++..++ ...++...+.+....|.++ +++++++++++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk--------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~----- 195 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK--------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR----- 195 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT--------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-----
Confidence 99999888 7 889999999998864433 3455778888888888777 88998888766
Q ss_pred CCChhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH------
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCR-------FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE------ 348 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------ 348 (476)
.++....+++..+.++...++ ++++++++++++.+ +|....+|+.+..++...|+...
T Consensus 196 -~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 196 -VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp -HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred -hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 345556789999999999887 79999999999998 88889999999999988776511
Q ss_pred ------HHH-HHHHHHHHHcCCCCC----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011858 349 ------SKS-YCENALRIYARPVPG----TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAM 400 (476)
Q Consensus 349 ------A~~-~~~~a~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 400 (476)
.+. .+....+.+.+.... ........++..++.+|...|+.++|.+.++...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 000 011222222222101 0112346688899999999999999999998764
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=8.2e-13 Score=121.60 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=130.1
Q ss_pred HcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCC-------chHHH
Q 011858 176 MLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPA-------SLEES 248 (476)
Q Consensus 176 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~ 248 (476)
..+++++|+..|+++++. .+..+..+..+|.+++..|+|++|+..|++++++.+...... .....
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 556788888888887776 567788999999999999999999999999999887643210 11236
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
.++.++|.+|..+|++++|+.++++++.+ .+....+++++|.+|..+|++++|+..|++++++ .|.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~ 383 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQ 383 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence 77999999999999999999999999874 2445778999999999999999999999999988 777
Q ss_pred HHHHHHHHHHHHHHcCChhHHHH-HHHHHH
Q 011858 329 VASVFVRLADLYHRTGKLRESKS-YCENAL 357 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A~~-~~~~a~ 357 (476)
...++..++.++...+++++|.. .+.+++
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988764 344433
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=1.3e-12 Score=112.06 Aligned_cols=171 Identities=14% Similarity=0.054 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
+..+..+|..+...|++++|+..|++++.. .+....++.++|.+|...|++++|+..+++++++ .+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p 69 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------DG 69 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Confidence 456889999999999999999999999774 3445678999999999999999999999999987 67
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHH-----------------------HHHHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIA-----------------------GGLTEISAIYE 384 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-----------------------~~~~~la~~~~ 384 (476)
....+++.+|.++..+|++++|+.+|++++++.+........ ... .+...++.+
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD-DIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS-HHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--
Confidence 788999999999999999999999999999987653100000 000 011112222
Q ss_pred HcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHH
Q 011858 385 SVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMV-GRYEEARSSFESAIA 442 (476)
Q Consensus 385 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~ 442 (476)
..|++++|++.++++++..+.. ......++.++... +.+++|.+.|.++.+
T Consensus 147 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGHEDD-------GHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTTSCH-------HHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhhccccch-------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2567777777777776654332 24444556666655 678888888888765
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=1.4e-11 Score=92.38 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.+..+..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++...+.. .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~ 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--R 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--c
Confidence 4567889999999999999999999999998 56668899999999999999999999999999997653 2
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhc
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGR 429 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (476)
........++..+|.++...|++++|+.+|+++++..++ ......++.+....++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLKKCQQAEKILKE 127 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHH
Confidence 344445788999999999999999999999999987542 1555666666655543
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.39 E-value=2.6e-12 Score=102.17 Aligned_cols=125 Identities=12% Similarity=0.184 Sum_probs=107.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 011858 298 YLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLT 377 (476)
Q Consensus 298 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 377 (476)
+...|++++|+..++++++. .+....++..+|.++...|++++|+.+|++++.+.+.. ..++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~ 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------AELYA 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------HHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------HHHHH
Confidence 35678999999999999998 67778999999999999999999999999999987542 66889
Q ss_pred HHHHH-HHHcCCH--HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 378 EISAI-YESVDEP--EEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 378 ~la~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
.+|.+ +...|++ ++|+.+|++++...+... .++..+|.++...|++++|+.+|++++++.+.
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALDSNEI-------TALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999 8899999 999999999999876653 78899999999999999999999999976443
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-11 Score=93.31 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=105.3
Q ss_pred CCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 71 NPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.|.....++.+|..+...| ++++|+..++++++. .+....++..+|.++...|++++|+.++++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG-DYPQAMKHYTEAIKR-----------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT-CSHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc-----------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567889999999999999 599999999999874 4555778999999999999999999999999998
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ 221 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 221 (476)
.+. . ..++..+|.++...|++++|+.+|+++++. .+....++..++.++...|+
T Consensus 80 ~~~-----~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 EPT-----F----IKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CTT-----C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred CCC-----c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 642 2 245899999999999999999999999987 56667788899999887764
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.38 E-value=1.1e-11 Score=96.88 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCC----------CchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDN----------HPSVASVFVRLADLYHRTGKLRESKSYCE 354 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 354 (476)
...+..+...|..++..|+|++|+.+|.+++.+.......+ .+....++.++|.+|..+|++++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45577889999999999999999999999999865432111 34567899999999999999999999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcH
Q 011858 355 NALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRY 430 (476)
Q Consensus 355 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (476)
+++.+.+. ...+++.+|.++..+|++++|+..|++++.+.+.+. ..+...++.+....++.
T Consensus 88 ~al~~~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 88 EVLKREET---------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA------SVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH------HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCc---------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHHH
Confidence 99998543 377999999999999999999999999999977752 13344555555544443
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=2.4e-11 Score=90.09 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
...++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---- 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---- 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----
Confidence 3567888999999999999999999999887 4556778899999999999999999999999887432
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhh
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (476)
...++..+|.++...|++++|+.++++++...+... .++..++.++...|
T Consensus 76 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 -----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-------EAKQNLGNAKQKQG 125 (125)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHC
T ss_pred -----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhcc
Confidence 256788899999999999999999999988766553 66777787776654
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=8.8e-12 Score=114.75 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=121.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-------CCchHHHHH
Q 011858 261 KGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD-------NHPSVASVF 333 (476)
Q Consensus 261 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~ 333 (476)
++++++|+..+++++. ..+..+..+.++|..++..|+|++|+.+|++++++....... ..+....++
T Consensus 247 l~~~~~A~~~~~~~~~------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTK------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHH------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHH------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 3445555555554433 134567788899999999999999999999999884321000 011236899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchH
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTI 413 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 413 (476)
.++|.+|..+|++++|+.+|++++++.+. ...+++.+|.+|..+|++++|+..|++++++.+.+.
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~------ 385 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGLDSA---------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK------ 385 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------
Confidence 99999999999999999999999998543 378899999999999999999999999999877664
Q ss_pred HHHHHHHHHHHHHhhcHHHHHH-HHHHHHHH
Q 011858 414 AGIEARMGVMFYMVGRYEEARS-SFESAIAK 443 (476)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~ 443 (476)
.++..++.++...|++++|.. .|.+.+..
T Consensus 386 -~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 386 -AARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688899999999999998874 44444443
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.37 E-value=2.3e-11 Score=91.05 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
+.....+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-------
Confidence 355677899999999999999999999998764 2333678899999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCH
Q 011858 325 NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP 389 (476)
Q Consensus 325 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 389 (476)
.+....++..+|.++...|++++|+.++++++++.+. ...++..++.++...|++
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 -DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHHTTC
T ss_pred -CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---------chHHHHHHHHHHHHHhcC
Confidence 5666889999999999999999999999999998543 256788999999988875
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.36 E-value=7.8e-11 Score=101.64 Aligned_cols=237 Identities=10% Similarity=0.032 Sum_probs=178.1
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM-QFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..+..+....+..++|+..+.+++.+ +|....+++..+.++...| .+++++.++++++...++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------- 121 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------- 121 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-------
Confidence 444445555566667899999999998 7888899999999999999 599999999999876543
Q ss_pred HHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Q 011858 246 EESADRRLMALICEAK-G-DYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFD--------EAVFSYQKAL 315 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al 315 (476)
...+++..+.++... + +++++++++.+++. .++....++...+.++...|.++ ++++++++++
T Consensus 122 -ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 122 -SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp -CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 345588889999888 7 89999999998754 55666778899999998888887 9999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011858 316 TVFKSSKGDNHPSVASVFVRLADLYHRTGK-------LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDE 388 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (476)
+. ++....+|...+.++...++ ++++++++++++.+... ...++..+..++...|+
T Consensus 195 ~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~---------n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 195 RV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH---------NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTC
T ss_pred Hh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCC
Confidence 98 88889999999999999887 68999999999998544 25677777777777765
Q ss_pred HHH------------HHH-HHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 389 PEE------------ALK-LLQRAMKLLEDKPG------QQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 389 ~~~------------A~~-~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
... .+. .+....+.+.+..+ ....-..++..++.+|...|+.++|.++++...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 400 000 01111122211111 1123346778899999999999999998888653
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=2.3e-11 Score=108.24 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--------CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSK--------GDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
..+..+|..+...|++++|+..|++++++..... ....+....++.++|.+|..+|++++|+.++++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3455666666666666666666666666433210 00156778999999999999999999999999999874
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSS 436 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 436 (476)
+. ...+++.+|.+|..+|++++|+.+|++++++.+... .++..++.++...++++++...
T Consensus 304 p~---------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~-------~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PS---------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-------AIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred ch---------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 32 378899999999999999999999999999977664 7888899999999998887653
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.34 E-value=1.1e-11 Score=91.20 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCCh
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA 369 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 369 (476)
.++.+|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++++.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------- 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------- 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Confidence 4678899999999999999999999998 7888999999999999999999999999999998543
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 370 EEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
...++..+|.++...|++++|+..|++++++.+..
T Consensus 84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 84 --DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 26689999999999999999999999999887654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.34 E-value=2.5e-11 Score=91.81 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=95.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIE 196 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 196 (476)
.+..+..+..+|.+++..|++++|+.+|++++...+.. ..++..+|.++...|++++|+..+++++.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 72 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------AVYYTNRALCYLKMQQPEQALADCRRALEL--- 72 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 34557789999999999999999999999999987532 256899999999999999999999999997
Q ss_pred HhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Q 011858 197 ALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHS 240 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 240 (476)
.|....++..+|.++...|++++|+.+|++++++.+...
T Consensus 73 -----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 111 (137)
T 3q49_B 73 -----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111 (137)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHH
Confidence 566778999999999999999999999999999998844
No 170
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=8.4e-12 Score=99.20 Aligned_cols=126 Identities=18% Similarity=0.253 Sum_probs=104.9
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 011858 258 CEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLA 337 (476)
Q Consensus 258 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 337 (476)
+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+|++++++ .+....++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHH------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Confidence 35678999999999988763 2344678899999999999999999999999998 455678999999
Q ss_pred HH-HHHcCCh--hHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 338 DL-YHRTGKL--RESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 338 ~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+ +...|++ ++|+.++++++.+.+. ...++..+|.++...|++++|+.+|++++++.+..
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSN---------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99 8899999 9999999999998543 25788999999999999999999999999887665
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.34 E-value=1.6e-13 Score=126.71 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCC
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPG 366 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 366 (476)
.+..+..+|.++...|++++|+.+|++++++ .+....++.++|.+|..+|++++|+.++++++++.+.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---- 72 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---- 72 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----
Confidence 3445666778888888899999999988888 6677888888999999999999999999888887432
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH--HHHhhcHHHHHHHHH
Q 011858 367 TTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVM--FYMVGRYEEARSSFE 438 (476)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 438 (476)
...++.++|.+|..+|++++|+.+|++++++.+... .++..++.+ +..+|++++|++.++
T Consensus 73 -----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 -----YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 366788888889899999999999998888866553 455566666 778888888888888
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.33 E-value=2.5e-11 Score=108.07 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANG----------QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVF 318 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 318 (476)
..+..+|..+...|++++|+..|++++.+..... ..+....++.++|.+|..+|++++|+.++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 3478899999999999999999999998665431 45677889999999999999999999999999987
Q ss_pred HhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 011858 319 KSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALK 394 (476)
Q Consensus 319 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (476)
.+....+++.+|.+|..+|++++|+..|++++++.+. ...++..++.++..+++++++.+
T Consensus 303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999998543 25678888888888888877754
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=4.8e-13 Score=123.60 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhc
Q 011858 72 PDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVP 151 (476)
Q Consensus 72 ~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (476)
++.+..+..+|..+...| ++++|+..|++|+++ .|....++..+|.++..+|++++|+..+++++++.
T Consensus 3 ~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 70 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAK-DYENAIKFYSQAIEL-----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70 (477)
T ss_dssp HHHHTTSSSSSSSTTTTT-CHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345566778888888998 599999999999996 46668899999999999999999999999999986
Q ss_pred cccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHhccHHHHHHHH
Q 011858 152 DVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEA--HVQAMQFDKAEELC 229 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~ 229 (476)
+. . ..++.++|.++..+|++++|+..|++++++ .|....++..++.+ +...|++++|+..+
T Consensus 71 p~-----~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 71 KK-----Y----IKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp TT-----C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred CC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 42 2 256899999999999999999999999987 44445567777777 88899999999999
Q ss_pred H-----------HHHHHHHhcCCCCchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHc
Q 011858 230 K-----------KTLEIHRAHSEPASLE---ESADRRLMALICEAKGD--YEAALEHLVLASMAMIAN 281 (476)
Q Consensus 230 ~-----------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~ 281 (476)
+ +++.+.+......... ....+..+...+...+. .......+.++.+++...
T Consensus 134 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 134 EHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp --CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred cccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 9 6665555444432221 11222223333333333 334445666666665543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.32 E-value=2.1e-11 Score=89.64 Aligned_cols=99 Identities=11% Similarity=-0.018 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQ 410 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 410 (476)
..++.+|..+...|++++|+..|+++++..+. ...++..+|.++...|++++|+..|++++++.+...
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--- 85 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE---------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--- 85 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Confidence 35788999999999999999999999998543 377899999999999999999999999999988774
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
.++..+|.++...|++++|+.+|++++++.+
T Consensus 86 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 86 ----AVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 7889999999999999999999999997644
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=8e-11 Score=86.24 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
+..+..+|..+...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-----
Confidence 567888999999999999999999999988 5666889999999999999999999999999998433
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF 424 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (476)
...++..+|.++...|++++|+.+++++++..+... .++..++.+.
T Consensus 71 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~ 116 (118)
T 1elw_A 71 ----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP-------QLKEGLQNME 116 (118)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-------HHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-------HHHHHHHHhh
Confidence 267889999999999999999999999998766543 5555555543
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=1.1e-10 Score=87.10 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCCh
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTA 369 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 369 (476)
.++.+|.++...|++++|+..|+++++.. ++++....++..+|.++...|++++|+.+|++++...+. .
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~------~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT------H 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------S
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC------C
Confidence 46788999999999999999999999872 233444589999999999999999999999999998543 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 370 EEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.....++..+|.++..+|++++|+.+|++++...+..
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3346789999999999999999999999999987655
No 177
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=1.8e-10 Score=85.24 Aligned_cols=117 Identities=24% Similarity=0.307 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
..++..+|.++...|++++|++++++++... +....++..+|.++...|++++|+.+++++++. .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CC
Confidence 5668899999999999999999999987642 233567889999999999999999999999987 55
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD 387 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (476)
....++..+|.++...|++++|+.++++++.+.+. ...++..++.++...|
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHhcc
Confidence 66788999999999999999999999999988533 2557778888876654
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.28 E-value=1e-11 Score=109.45 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH-----------------HHHHHHHHHHHHcCChhHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA-----------------SVFVRLADLYHRTGKLRESKS 351 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~ 351 (476)
..+..+|..++..|++++|+.+|++++.+ .+... .++.++|.+|..+|++++|+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455566666666666666666666655 22222 488999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-HHhhcH
Q 011858 352 YCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMF-YMVGRY 430 (476)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 430 (476)
+|++++++.+. ...+++++|.+|..+|++++|+.+|++++++.+.+. .++..++.+. ...+..
T Consensus 252 ~~~~al~~~p~---------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~-------~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 252 HCNIVLTEEEK---------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK-------AIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHHHHCTT---------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHH
Confidence 99999998543 367899999999999999999999999999988764 5666777774 456778
Q ss_pred HHHHHHHHHHHHHHHH
Q 011858 431 EEARSSFESAIAKLRA 446 (476)
Q Consensus 431 ~~A~~~~~~a~~~~~~ 446 (476)
+++...|.+++...+.
T Consensus 316 ~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDE 331 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHhhCCCCC
Confidence 8888999998876544
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.28 E-value=1.4e-10 Score=86.79 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
..+..+..+|.++...|++++|+.+|++++...+. ...++..+|.++...|++++|+.++++++...+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 34678899999999999999999999999998533 267889999999999999999999999999998864
Q ss_pred CCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 408 GQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
........++..+|.++...|++++|+.+|++++++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 444444688999999999999999999999999975
No 180
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.2e-09 Score=92.38 Aligned_cols=251 Identities=13% Similarity=0.038 Sum_probs=165.1
Q ss_pred HHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHH
Q 011858 129 AIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGET 208 (476)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 208 (476)
.-.+..|+|..++.-.. .+.+ .... .....+.++|..+|++.... .+.+. ..+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~-----~~~~---~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a 73 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSK-----VTDN---TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKV 73 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSC-----CCCH---HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHH
T ss_pred HHHHHhhHHHHHHHHHH---hcCc-----cchH---HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHH
Confidence 34567899999998433 2221 1111 23566778888999987521 12232 223
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVA 288 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 288 (476)
...++..+. ++ |+..+++.+... .. . ..++..+|.++...|++++|++++.+.+. .+......
T Consensus 74 ~~~la~~~~--~~---a~~~l~~l~~~~----~~---~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~l 136 (310)
T 3mv2_B 74 LDLYVQFLD--TK---NIEELENLLKDK----QN---S-PYELYLLATAQAILGDLDKSLETCVEGID----NDEAEGTT 136 (310)
T ss_dssp HHHHHHHHT--TT---CCHHHHHTTTTS----CC---C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHH
T ss_pred HHHHHHHhc--cc---HHHHHHHHHhcC----CC---C-cHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcH
Confidence 344444332 22 666666654321 11 1 22356899999999999999999998743 22224677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHH
Q 011858 289 AIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP------SVASVFVRLADLYHRTG--KLRESKSYCENALRIY 360 (476)
Q Consensus 289 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~ 360 (476)
.++..++.++..+|+.+.|.+.+++..+. ++ +...+...-+++....| ++.+|..+|+++.+..
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 88889999999999999999999998777 44 23333333355566667 9999999999976542
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCC---CchHHHHHHHHHHHHHHhhcHHHHHHHH
Q 011858 361 ARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQ---QSTIAGIEARMGVMFYMVGRYEEARSSF 437 (476)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (476)
. + ......+.+ ++..+|++++|...++.+++..++.... .+.-..++.+++.+...+|+ +|.+++
T Consensus 209 p------~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 209 P------T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp C------S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred C------C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 1 1 112223333 8999999999999999888876553110 12235778888888888997 888888
Q ss_pred HHHHHH
Q 011858 438 ESAIAK 443 (476)
Q Consensus 438 ~~a~~~ 443 (476)
+++.+.
T Consensus 277 ~qL~~~ 282 (310)
T 3mv2_B 277 NQLVKL 282 (310)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887753
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.9e-11 Score=90.05 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchH---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSV---ASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.....+..+|..+...|++++|+.+|+++++. .+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 44566777788888888888888888887765 3333 677788888888888888888888888776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
...++..+|.++...|++++|+.+|++++.+.+..
T Consensus 98 ---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 ---------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 15667778888888888888888888887775554
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.23 E-value=3.4e-10 Score=82.81 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
+..+..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+.+++++++. .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 69 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP 69 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------Cc
Confidence 456888999999999999999999998764 2333668899999999999999999999999998 66
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIY 383 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (476)
....++..+|.++...|++++|+.++++++++.+. ...++..++.+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN---------NPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---------CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---------CHHHHHHHHHhh
Confidence 67889999999999999999999999999986432 244555555543
No 183
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=3.1e-07 Score=87.71 Aligned_cols=336 Identities=10% Similarity=-0.023 Sum_probs=207.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCC---hhHH
Q 011858 64 FTDASLDNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGK---FEEA 140 (476)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A 140 (476)
++.....+|.....|..++......+ .++.+...|++++..+ |.....|......-...|+ ++.+
T Consensus 55 lE~~l~~np~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~f-----------P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 55 LNDMIEEQPTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRF-----------PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 45556788999999999999998888 5999999999999975 4455577778888888888 9999
Q ss_pred HHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCCh----hhHH----HHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 011858 141 VPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQV----DRSI----GCYEEGLKIQIEALGETDPRVGETCRYL 212 (476)
Q Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~l 212 (476)
..+|++++...+.. .+. .+|..........++. +++. ..|++|+.. .|.-++....+|...
T Consensus 123 ~~lfeRal~~~~~~---~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 123 EPVLARCLSKELGN---NDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEY 191 (679)
T ss_dssp HHHHHHHTCSSSCC---CCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHhcCCC---CCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHH
Confidence 99999999987311 111 2244444434444443 3444 555555543 333012222233322
Q ss_pred HHHH---------HHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----------HHHHhCCHHHHHHHHHH
Q 011858 213 AEAH---------VQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMAL----------ICEAKGDYEAALEHLVL 273 (476)
Q Consensus 213 a~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~----------~~~~~g~~~~A~~~~~~ 273 (476)
.... ...++++.+..+|++++.+ +..........|...-. +-....+|+.|...+.+
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e 267 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQD 267 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHH
Confidence 2221 2345678888888888742 11100001000111100 01112234444444433
Q ss_pred HHHHHHHcCC--------------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhcCCCCC
Q 011858 274 ASMAMIANGQ--------------------DNEVAAIDVSIGNIYLSLC-------RFDEAVFSYQKALTVFKSSKGDNH 326 (476)
Q Consensus 274 a~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~ 326 (476)
...+...... .......|..........+ ..+.....|++++.. .
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~ 339 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--------V 339 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--------c
Confidence 2221111110 1122334444433322221 134456789999887 6
Q ss_pred chHHHHHHHHHHHHHHcCChhHHH-HHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 327 PSVASVFVRLADLYHRTGKLRESK-SYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
+....+|...+..+...|+.++|. ..|++++...+. ....+...+.+....|++++|...|++++...+.
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999997 999999987543 2566788899999999999999999999987531
Q ss_pred --------ccCC-------CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 406 --------KPGQ-------QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 406 --------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.+.. ......+|...+.+..+.|+.+.|...|.+|++.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1100 0123457778888888899999999999999864
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.22 E-value=1.3e-09 Score=81.18 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
++.+|.++...|++++|+..|++++.. .++.+....+++.+|.++...|++++|+.+|+++++.. ++++...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccH
Confidence 678899999999999999999987653 44555556789999999999999999999999999872 2233348
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.++..+|.++..+|++++|+.+|++++...+.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 88999999999999999999999999998543
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.19 E-value=3.7e-11 Score=105.86 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CC--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 248 SADRRLMALICEAKGDYEAALEHLVLASMAMIANG---QD--------NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALT 316 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 316 (476)
+..+..+|..+...|++++|+..|++++.+..... .. .....+++++|.+|..+|++++|+.+++++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34477889999999999999999999987532110 00 00113889999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH-HHHcCCHHHHHHH
Q 011858 317 VFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAI-YESVDEPEEALKL 395 (476)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~ 395 (476)
+ ++....+++++|.+|..+|++++|+.+|++++++.+. ...++..++.+ ....+..+++...
T Consensus 259 ~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---------~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 259 E--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---------DKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp H--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6778899999999999999999999999999987543 25567777777 4456778888999
Q ss_pred HHHHHHHHHhc
Q 011858 396 LQRAMKLLEDK 406 (476)
Q Consensus 396 ~~~a~~~~~~~ 406 (476)
|.+++...+..
T Consensus 322 ~~~~l~~~p~~ 332 (338)
T 2if4_A 322 YKGIFKGKDEG 332 (338)
T ss_dssp -----------
T ss_pred HHHhhCCCCCC
Confidence 99998877665
No 186
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=5.6e-09 Score=99.54 Aligned_cols=232 Identities=9% Similarity=-0.001 Sum_probs=176.1
Q ss_pred HHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 011858 139 EAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSI-GCYEEGLKIQIEALGETDPRVGETCRYLAEAHV 217 (476)
Q Consensus 139 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 217 (476)
.....|++++..++.. + .+|+..+..+...|+.++|. ..|++++.. .|.....+...+....
T Consensus 327 Rv~~~Ye~aL~~~p~~-----~----~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFA-----P----EIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHTTTC-----H----HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-----H----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence 3456788888876531 1 45888999999999999997 999999875 4455567888899999
Q ss_pred HhccHHHHHHHHHHHHHHHHhcC------CCC--------chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHS------EPA--------SLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~------~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
..|++++|...|++++....... .+. ......+|...+.+....|+.+.|...|.+|+...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----- 464 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----- 464 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----
Confidence 99999999999999998653110 010 01234467777888888999999999999997631
Q ss_pred ChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 284 DNEVAAIDVSIGNIYLSLC-RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
......++...+.+....+ +++.|...|+++++.+ +.....+...+......|+.+.|..+|++++.....
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 1111334556676766665 4899999999999984 334556677788888899999999999999986431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
......++..........|+.+.+....+++.+..++.
T Consensus 537 ------~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 537 ------SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp ------TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred ------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 22456778888888889999999999999999988775
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=8.3e-10 Score=84.54 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=97.2
Q ss_pred CCCCchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 011858 70 DNPDLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAIS 149 (476)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (476)
.++..+..++.+|..+...| ++++|+.+|+++++.. ...+....++..+|.++...|++++|+.++++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCG-DYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34567889999999999999 5999999999998751 11122478999999999999999999999999999
Q ss_pred hccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011858 150 VPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAH 216 (476)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 216 (476)
..+. +. .++..+|.++...|++++|+.+|++++++ .|....++..++.+.
T Consensus 94 ~~~~-----~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 94 KDGG-----DV----KALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS 143 (148)
T ss_dssp HTSC-----CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred hCcc-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 8642 22 45899999999999999999999999987 344444555555543
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.17 E-value=4.9e-11 Score=86.50 Aligned_cols=103 Identities=11% Similarity=0.063 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
..++..+|.++...|++++|+.++++++++ .+....++..+|.++...|++++|+.++++++++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----- 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence 345678899999999999999999999988 5666788999999999999999999999999987432
Q ss_pred ChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Q 011858 368 TAEEIAGGLTEISAIYESV-DEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~ 405 (476)
.....++..+|.++... |++++|++++++++...+.
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 01256889999999999 9999999999998765443
No 189
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=5.9e-09 Score=88.15 Aligned_cols=179 Identities=12% Similarity=0.030 Sum_probs=127.4
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchH
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLE 246 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 246 (476)
+..+|.++...|++++|+.++.+.+.. ........++..++.++..+|+.+.|.+.++++.+..+.... .-.
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~--~~d 174 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS--GDN 174 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH--HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc--cch
Confidence 579999999999999999999998653 111367888999999999999999999999998765431000 001
Q ss_pred HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 011858 247 ESADRRLMALICEAKG--DYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD 324 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 324 (476)
...+...-+++....| ++.+|..+|++... ..++ ......+.+ ++..+|++++|...++.+++..-.....
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 2222333355566667 99999999998633 1111 112233333 8999999999999999777664221000
Q ss_pred C--CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 325 N--HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 325 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
+ .+..+.++.+++.+...+|+ +|.++++++.+..+.
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 25678899999999999997 889999999987543
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.15 E-value=1.7e-10 Score=86.46 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=91.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHHHcCCCCCCC
Q 011858 299 LSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKL----------RESKSYCENALRIYARPVPGTT 368 (476)
Q Consensus 299 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~ 368 (476)
.+.+.|++|+..+++++++ .|....+++++|.++...+++ ++|+..|++++++.++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------ 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------
Confidence 3456789999999999999 889999999999999999876 4999999999999544
Q ss_pred hHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVD-----------EPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSF 437 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 437 (476)
...+++++|.+|..+| ++++|+.+|++|+++.++. ..|..+++..
T Consensus 79 ---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~---------------------~~y~~al~~~ 134 (158)
T 1zu2_A 79 ---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN---------------------THYLKSLEMT 134 (158)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC---------------------HHHHHHHHHH
Confidence 3789999999999875 8999999999999998765 2456666666
Q ss_pred HHHHHHHHHh
Q 011858 438 ESAIAKLRAS 447 (476)
Q Consensus 438 ~~a~~~~~~~ 447 (476)
.++.++.-..
T Consensus 135 ~ka~el~~~~ 144 (158)
T 1zu2_A 135 AKAPQLHAEA 144 (158)
T ss_dssp HTHHHHHHHH
T ss_pred HhCHhccCcc
Confidence 6666654433
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.15 E-value=1e-10 Score=85.48 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=77.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Q 011858 300 SLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEI 379 (476)
Q Consensus 300 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 379 (476)
.+|++++|+.+|++++++. .++|....++.++|.+|..+|++++|+.+|++++++.+. ...++..+
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l 67 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---------HQALRVFY 67 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------chHHHHHH
Confidence 4689999999999999851 124778899999999999999999999999999998543 26789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 380 SAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
|.++...|++++|+.+|++++...+..
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999987765
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.15 E-value=2.5e-10 Score=83.48 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=77.9
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Q 011858 260 AKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADL 339 (476)
Q Consensus 260 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 339 (476)
.+|++++|+.+|++++.. ....+....++.++|.++...|++++|+.+|++++++ .|....++.++|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHH
Confidence 468999999999998762 1124778899999999999999999999999999998 77778999999999
Q ss_pred HHHcCChhHHHHHHHHHHHHHcC
Q 011858 340 YHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
+...|++++|+.++++++...+.
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998654
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=5.1e-10 Score=105.19 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=149.5
Q ss_pred cCC-hhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCC----------hhhHHHHHHHHHHHHHHHhcCCc
Q 011858 134 LGK-FEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQ----------VDRSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 134 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 202 (476)
.|+ .++|+..+++++.+.++.. .+|+..+.++...|+ +++++.+++++++. +
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~---------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~ 103 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFA---------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 103 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred cCCCCHHHHHHHHHHHHHCchhH---------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence 344 4678999999999976332 568999999999988 99999999999987 7
Q ss_pred hhHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Q 011858 203 PRVGETCRYLAEAHVQAM--QFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKG-DYEAALEHLVLASMAMI 279 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~ 279 (476)
|....+|...+.++...| ++++++.++++++++.++ ...+|...+.+....| .++++++++.++++
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~--------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--- 172 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--------NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--- 172 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc--------cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---
Confidence 888899999999999999 779999999999997644 3455888899999999 89999999998754
Q ss_pred HcCCChhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC
Q 011858 280 ANGQDNEVAAIDVSIGNIYLSL--------------CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK 345 (476)
Q Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 345 (476)
.++....+|+..+.++... +.++++++++.+++.+ .|....+|+.++.++...++
T Consensus 173 ---~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 ---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp ---TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCC
T ss_pred ---HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCC
Confidence 4566677899999998875 6689999999999998 78888999999999998888
Q ss_pred hhH
Q 011858 346 LRE 348 (476)
Q Consensus 346 ~~~ 348 (476)
+++
T Consensus 242 ~~~ 244 (567)
T 1dce_A 242 HDV 244 (567)
T ss_dssp CSC
T ss_pred ccc
Confidence 665
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=6.3e-10 Score=104.55 Aligned_cols=179 Identities=9% Similarity=-0.038 Sum_probs=150.8
Q ss_pred HHHcCCh-hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHhcCCC
Q 011858 174 CSMLGQV-DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQ----------FDKAEELCKKTLEIHRAHSEP 242 (476)
Q Consensus 174 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 242 (476)
....|++ ++|+..+.+++.+ +|....+|+..+.++...|+ +++++..++++++..++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---- 105 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---- 105 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----
Confidence 3445555 4679999999988 78888999999999999998 99999999999986644
Q ss_pred CchHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 011858 243 ASLEESADRRLMALICEAKG--DYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC-RFDEAVFSYQKALTVFK 319 (476)
Q Consensus 243 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~ 319 (476)
...+|...+.++...+ +++++++++.++++. ++....+|...+.+....| .++++++++.++++.
T Consensus 106 ----~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 106 ----SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ----CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ----CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 3455888999999999 779999999999773 4555778999999999999 999999999999887
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYHRT--------------GKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
++....+|...+.++... +.++++++++.+++.+.+.. ..+|+.++.++..
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~---------~saW~y~~~ll~~ 238 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND---------QSAWFYHRWLLGR 238 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC---------SHHHHHHHHHHSC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC---------ccHHHHHHHHHhc
Confidence 788899999999998885 55789999999999986542 5678889999988
Q ss_pred cCCHHH
Q 011858 386 VDEPEE 391 (476)
Q Consensus 386 ~g~~~~ 391 (476)
.+++++
T Consensus 239 ~~~~~~ 244 (567)
T 1dce_A 239 AEPHDV 244 (567)
T ss_dssp CCCCSC
T ss_pred CCCccc
Confidence 888655
No 195
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.11 E-value=8.9e-11 Score=85.07 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 327 PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 327 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
|....++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++|+.+++++++..+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~- 72 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED- 72 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-
Confidence 344567889999999999999999999999998543 2568899999999999999999999999987655
Q ss_pred cCCCchHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHH
Q 011858 407 PGQQSTIAGIEARMGVMFYMV-GRYEEARSSFESAIAK 443 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 443 (476)
.....++..+|.++... |++++|++++++++..
T Consensus 73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 ----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 01137889999999999 9999999999998853
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.8e-10 Score=82.33 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
+..+..+|.++...|++++|+.+|++++++ .|....++.++|.++..+|++++|+..+++++++.+.. .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA---E 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST---T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---c
Confidence 567889999999999999999999999998 67778999999999999999999999999999886542 1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
.......++..+|.++...|+++.|+..++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 333457788999999999998877766544
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.99 E-value=7.6e-10 Score=82.98 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=77.5
Q ss_pred hcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChh----------hHHHHHHHHHHHHHHHhcCCc
Q 011858 133 SLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVD----------RSIGCYEEGLKIQIEALGETD 202 (476)
Q Consensus 133 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~ 202 (476)
+.+.|++|+..+++++++.+.. ..+++++|.++...++++ +|+..|++++++ +
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~---------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLD---------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHhHHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 4567899999999999997632 256899999999998765 999999999998 7
Q ss_pred hhHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHh
Q 011858 203 PRVGETCRYLAEAHVQAM-----------QFDKAEELCKKTLEIHRA 238 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~ 238 (476)
|....+++++|.+|..+| ++++|+.+|++++++.+.
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 888999999999999885 899999999999998765
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=3e-10 Score=82.16 Aligned_cols=100 Identities=10% Similarity=0.116 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccC
Q 011858 329 VASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPG 408 (476)
Q Consensus 329 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 408 (476)
....+..+|.++...|++++|+..|++++++.+. ...++.++|.++..+|++++|+..|++++++.+.. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA-E 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST-T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-c
Confidence 3578899999999999999999999999998543 26789999999999999999999999999887665 2
Q ss_pred CCchHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 011858 409 QQSTIAGIEARMGVMFYMVGRYEEARSSFE 438 (476)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 438 (476)
.......++..+|.++...|++++|+..++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 333345788889999998888777665544
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=1.2e-08 Score=70.40 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
+....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++++.+.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-- 75 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-- 75 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--
Confidence 445677888999999999999999999999987 5666788899999999999999999999999987433
Q ss_pred CCCChHHHHHHHHHHHHHHHHcC
Q 011858 365 PGTTAEEIAGGLTEISAIYESVD 387 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g 387 (476)
...++..+|.++...|
T Consensus 76 -------~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 -------NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -------CHHHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHHHhcC
Confidence 2567788888877654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.93 E-value=1.8e-08 Score=73.16 Aligned_cols=84 Identities=7% Similarity=0.035 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 306 EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 306 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
+|+..|+++++. .|....++..+|.++...|++++|+.+|++++.+.+. ...++..+|.++..
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~ 65 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---------YSVAWKWLGKTLQG 65 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---------cHHHHHHHHHHHHH
Confidence 577888888876 6777899999999999999999999999999998543 26788999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhc
Q 011858 386 VDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 386 ~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.|++++|+.+|++++++.+..
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999998875
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.93 E-value=1.3e-08 Score=70.24 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=74.6
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
.+....++..+|.++...|++++|+.+|++++++.+. ...++..+|.++...|++++|+.+|++++++.+.
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566789999999999999999999999999998433 2578899999999999999999999999998766
Q ss_pred ccCCCchHHHHHHHHHHHHHHhh
Q 011858 406 KPGQQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~g 428 (476)
.. .++..+|.++...|
T Consensus 76 ~~-------~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NA-------EAKQNLGNAKQKQG 91 (91)
T ss_dssp CH-------HHHHHHHHHHHHHC
T ss_pred CH-------HHHHHHHHHHHhcC
Confidence 53 77888998887664
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.91 E-value=1.9e-08 Score=73.05 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 011858 138 EEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHV 217 (476)
Q Consensus 138 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 217 (476)
++|+..|++++...+. +. .+++.+|.++...|++++|+.+|++++++ .|....++..+|.++.
T Consensus 2 ~~a~~~~~~al~~~p~-----~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-----NM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTTCC-----CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-----cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence 4688999999987652 22 45899999999999999999999999987 5667788999999999
Q ss_pred HhccHHHHHHHHHHHHHHHHhcCC
Q 011858 218 QAMQFDKAEELCKKTLEIHRAHSE 241 (476)
Q Consensus 218 ~~g~~~~A~~~~~~al~~~~~~~~ 241 (476)
..|++++|+..|++++++.+...+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999877554
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=1.4e-08 Score=76.24 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q 011858 302 CRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA 381 (476)
Q Consensus 302 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 381 (476)
+++++|+.+|+++.+. + ++. +. +|.+|...+..++|+.+|+++.+.- ...+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~------g-~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----------~~~a~~~Lg~ 65 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL------N-EMF---GC--LSLVSNSQINKQKLFQYLSKACELN-----------SGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHT------T-CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHTT-----------CHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC------C-CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcCC-----------CHHHHHHHHH
Confidence 4688999999999876 2 222 22 9999999999999999999998851 2678999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHH
Q 011858 382 IYES----VDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYM----VGRYEEARSSFESAIAK 443 (476)
Q Consensus 382 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 443 (476)
+|.. .+++++|+.+|+++.+. .. ..++++||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL--ND-------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC--CC-------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999 89999999999999864 22 3788999999999 89999999999999863
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.87 E-value=5.4e-09 Score=73.65 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 371 EIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
....+++.+|.++...|++++|+.+|++++++.+... .++..+|.+|...|++++|+.+|++++++.+..++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-------GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 3467899999999999999999999999999988775 789999999999999999999999999998877664
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.82 E-value=3.7e-08 Score=69.29 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=63.8
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
+|....+++.+|.++...|++++|+.+|++++++.+. ...++..+|.+|...|++++|+..|++++++.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD---------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4667889999999999999999999999999998544 2568999999999999999999999999999877
Q ss_pred c
Q 011858 406 K 406 (476)
Q Consensus 406 ~ 406 (476)
.
T Consensus 74 ~ 74 (100)
T 3ma5_A 74 E 74 (100)
T ss_dssp H
T ss_pred C
Confidence 6
No 206
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=3e-06 Score=78.44 Aligned_cols=211 Identities=14% Similarity=0.016 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCC
Q 011858 184 IGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGD 263 (476)
Q Consensus 184 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 263 (476)
...|++++.. .|....++...+..+...|+.++|...|++++.. +... .. +...+.. .+
T Consensus 199 ~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-----~l---~~~y~~~----~e 257 (493)
T 2uy1_A 199 HFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-----FL---SLYYGLV----MD 257 (493)
T ss_dssp HHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-----HH---HHHHHHH----TT
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-----HH---HHHHHhh----cc
Confidence 4455555544 2334567777888888888999999999999887 3211 11 1111111 11
Q ss_pred HHHHHHHHHHHHHHHHHc-------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011858 264 YEAALEHLVLASMAMIAN-------GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL 336 (476)
Q Consensus 264 ~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 336 (476)
.++. ++......... ........++...+......++.+.|...|+++ .. + .....++...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v~i~~ 325 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHVFIYC 325 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHHHHHH
Confidence 1111 22111110000 011223456777777777888899999999998 31 1 1234566666
Q ss_pred HHHHHHcC-ChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHH
Q 011858 337 ADLYHRTG-KLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAG 415 (476)
Q Consensus 337 a~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 415 (476)
+.+-...+ +.+.|...|+.+++...+ .+ ..+...+......|+.+.|...|+++. .. ..
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~~------~~---~~~~~yid~e~~~~~~~~aR~l~er~~----k~-------~~ 385 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHPD------ST---LLKEEFFLFLLRIGDEENARALFKRLE----KT-------SR 385 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCTT------CH---HHHHHHHHHHHHHTCHHHHHHHHHHSC----CB-------HH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCCC------CH---HHHHHHHHHHHHcCCHHHHHHHHHHHH----HH-------HH
Confidence 66666555 699999999999997533 12 234445677788999999999999872 11 25
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 416 IEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 416 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
++......-...|+.+.+...++++++.++..
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~ 417 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDAIKAD 417 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhccc
Confidence 66666677777899999999999999877643
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=6.9e-08 Score=72.44 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Q 011858 262 GDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH 341 (476)
Q Consensus 262 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 341 (476)
+++++|+++|+++.+ .++.. +. +|.+|...+..++|+.+|+++.+. ....++++||.+|.
T Consensus 9 ~d~~~A~~~~~~aa~----~g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACE----LNEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHH----TTCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHc----CCCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHH
Confidence 478899999998854 22222 22 899999999999999999999875 23678999999999
Q ss_pred H----cCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 011858 342 R----TGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES----VDEPEEALKLLQRAMKL 402 (476)
Q Consensus 342 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 402 (476)
. .+++++|+.+|+++.+.- ...++.++|.+|.. .+++++|+.+|+++.+.
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~g-----------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGLN-----------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 8 899999999999998751 26789999999999 89999999999999875
No 208
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.72 E-value=3.2e-06 Score=74.23 Aligned_cols=192 Identities=13% Similarity=0.087 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCCCCCch
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLS-LCRFDEAVFSYQKALTVFKSSKGDNHPS 328 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 328 (476)
+...+|.+|...|++++-.+++......+.... ....+.+...+-..+.. -+..+.-++...++++.++.. ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~ 95 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT 95 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence 367899999999999999998887644333221 12223333344444433 355666777888888877643 333
Q ss_pred HHH--HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 329 VAS--VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 329 ~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
... .-..+|.+|...|+|.+|...+.+..+-.++. ++.....+++.....+|...+++.++...+.++.......
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 333 44589999999999999999999999988874 3456788899999999999999999999999999988776
Q ss_pred cCCCchHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 407 PGQQSTIAGIEARMGVMFY-MVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
+.++...+.+...-|.++. ..++|.+|..+|-++..-+.+.+.
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~ 216 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS 216 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc
Confidence 4455566777777888999 899999999999999876655543
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.70 E-value=7.7e-08 Score=67.54 Aligned_cols=90 Identities=9% Similarity=0.165 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChH
Q 011858 292 VSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVAS-VFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAE 370 (476)
Q Consensus 292 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 370 (476)
+..|..+...|++++|+..|+++++. .+.... ++..+|.++...|++++|+.+|++++++.+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------- 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS------- 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------
Confidence 56788999999999999999999998 677778 99999999999999999999999999985442
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 371 EIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..++.. +.+.+++..|+++....+..
T Consensus 69 --~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 69 --PALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp --THHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred --HHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 122211 56778888888888777765
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.69 E-value=5.8e-06 Score=72.62 Aligned_cols=193 Identities=10% Similarity=0.013 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCCh
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIANGQDN 285 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 285 (476)
.+...+|..|...|+.++-..++............. ..+.+...+-..+.. -+..+.-++.+.++++.+.......
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988888776655443322 333434444444433 3556666777777777666543333
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCC
Q 011858 286 EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVP 365 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 365 (476)
....+-..+|.+|+..|+|.+|...+.+.++.++.. ++......++..-..+|...+++.++...+.++.......
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai-- 172 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI-- 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC--
Confidence 334455689999999999999999999999988876 4456778889999999999999999999999999887653
Q ss_pred CCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhc
Q 011858 366 GTTAEEIAGGLTEISAIYE-SVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..++...+.....-|.++. ..++|.+|..+|-++..-+...
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~ 214 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV 214 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc
Confidence 1345556777777888999 8999999999999997666543
No 211
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=1.8e-05 Score=73.20 Aligned_cols=150 Identities=7% Similarity=0.022 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------------------------
Q 011858 267 ALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSK------------------------ 322 (476)
Q Consensus 267 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------ 322 (476)
....|++++... +....++...+..+...|+.++|...|++++.. ....
T Consensus 198 v~~~ye~al~~~------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 198 MHFIHNYILDSF------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 445566554422 222566777777788888888888888887765 1110
Q ss_pred -CC-------CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcC-CHHHHH
Q 011858 323 -GD-------NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVD-EPEEAL 393 (476)
Q Consensus 323 -~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~ 393 (476)
.. .......+|...+....+.++.+.|...|+++ . .. + . ...++...+.+....+ +.+.|.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~----~-~---~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE----G-V---GPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS----C-C---CHHHHHHHHHHHHHHHCCSHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC----C-C---ChHHHHHHHHHHHHHCCChHHHH
Confidence 00 00112234555566666678889999999988 2 11 1 1 1335555566666555 699999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 394 KLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
..|+.+++..++.+ ..+...+......|+.+.|...|+++
T Consensus 341 ~ife~al~~~~~~~-------~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLLKHPDST-------LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998765432 34445667778889999998877764
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.66 E-value=1.5e-07 Score=66.08 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCch
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG-GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQST 412 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 412 (476)
+..|.++...|++++|+..|+++++..+. ... ++..+|.++...|++++|+.+|++++++.+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV---------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP----- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS---------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----
Confidence 56789999999999999999999998543 255 899999999999999999999999999877664
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 413 IAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
.++.. +.+.+++.+|+++....+.
T Consensus 70 --~~~~~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 70 --ALQAR--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp --HHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred --HHHHH--------HHHHHHHHHHHHHhccCcc
Confidence 33211 7788888888888766543
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.58 E-value=1.6e-05 Score=65.64 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHHHcCCCCCCChHHHHHHH
Q 011858 304 FDEAVFSYQKALTVFKSSKGDNHPS--VASVFVRLADLYHRT-----GKLRESKSYCENALRIYARPVPGTTAEEIAGGL 376 (476)
Q Consensus 304 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (476)
..+|...+++++++ +|. ...++..+|.+|... |+.++|.++|++++++.+.. ...++
T Consensus 179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~--------~id~~ 242 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH--------DPDHH 242 (301)
T ss_dssp HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT--------CSHHH
T ss_pred HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC--------CchHH
Confidence 47889999999999 565 677999999999995 99999999999999996531 25678
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhc
Q 011858 377 TEISAIYES-VDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 377 ~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+..|..+.. +|++++|..++++++...+..
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 888998888 599999999999999987764
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.52 E-value=2.3e-06 Score=60.36 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCc
Q 011858 249 ADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ-DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHP 327 (476)
Q Consensus 249 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 327 (476)
.-.+.+|..+...|+|..|+.+|++|+........ ......++..+|.++..+|++++|+.++++++++ .|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence 34788999999999999999999999987754432 3456788999999999999999999999999998 66
Q ss_pred hHHHHHHHHH
Q 011858 328 SVASVFVRLA 337 (476)
Q Consensus 328 ~~~~~~~~la 337 (476)
....+..+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 6677777766
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.52 E-value=4.1e-06 Score=72.23 Aligned_cols=136 Identities=10% Similarity=-0.012 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHc---C-ChhHHHHHHHHHHHHHcC
Q 011858 290 IDVSIGNIYLSLC---RFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRT---G-KLRESKSYCENALRIYAR 362 (476)
Q Consensus 290 ~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~a~~~~~~ 362 (476)
-++..|..+...+ .+.+|+.+|++++++ +|..+.++..++.+|... + .......-+..++.....
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3344455555444 358899999999999 888888888888877532 1 112222333344433222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 363 PVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
. ...+....++..++..+...|++++|+..+++++.+.+. ...+..+|.++...|++++|++.|++|+.
T Consensus 270 ~---~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--------~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 L---PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--------WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp C---GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c---ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 122344678888888888899999999999999999521 35677899999999999999999999998
Q ss_pred HH
Q 011858 443 KL 444 (476)
Q Consensus 443 ~~ 444 (476)
+-
T Consensus 339 L~ 340 (372)
T 3ly7_A 339 LR 340 (372)
T ss_dssp HS
T ss_pred cC
Confidence 64
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.45 E-value=1.9e-05 Score=73.00 Aligned_cols=166 Identities=9% Similarity=-0.031 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHhc
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLC---------RFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~~~ 321 (476)
+..+-..+.+.|+.++|+++|++... .+..++ ..+|+.+-.++...+ ..++|.+.|++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~----~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARR----NGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHH----HTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----
Confidence 45556788899999999999998744 344443 335555555665443 367788888776543
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011858 322 KGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMK 401 (476)
Q Consensus 322 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 401 (476)
+-.| ...+|..+...|.+.|++++|.++|++..+.--. + ...+|..+-..|.+.|+.++|.+.|++..+
T Consensus 100 --G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~------P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 100 --KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ------P--RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp --TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------C--ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2233 4668899999999999999999999998764211 1 256788889999999999999999998764
Q ss_pred HHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 402 LLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
. |..+. ..+|..+-..|.+.|+.++|.+++++..+
T Consensus 169 ~-----G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 169 S-----EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp T-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-----CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3 32222 25778899999999999999999988654
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.43 E-value=3.1e-06 Score=59.65 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 373 AGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
+.-++.+|..+...|+|..|+.+|++|++..+...........++..+|.++.++|++++|+.++++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999998866533345567899999999999999999999999999753
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.42 E-value=1.9e-05 Score=72.99 Aligned_cols=168 Identities=8% Similarity=0.005 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHH
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKG---------DYEAALEHLVLASMAM 278 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a~~~~ 278 (476)
.+..+-..+.+.|++++|+++|++..+.. ..+ ...+|+.+-.++...+ ..++|.+.|++..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G---v~p----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~--- 97 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG---VQL----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI--- 97 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT---CCC----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH---
Confidence 35556678889999999999999987531 112 1334555555555443 3678888887653
Q ss_pred HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 279 IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
..+..++ ..+|+.+...|.+.|++++|..++++..+. +-.| ...+|..+-..|.+.|+.++|.++|++..+
T Consensus 98 -~~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 98 -VDKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp -HTTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HhCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444 457888999999999999999999987653 2233 367888999999999999999999999876
Q ss_pred HHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 359 IYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
.--. + ...+|..+-..+.+.|+.++|.+++++..+.
T Consensus 169 ~G~~------P--d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 SEVV------P--EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCC------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCC------C--CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 5221 1 1567888999999999999999999987654
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.37 E-value=2.5e-05 Score=67.39 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHHHHHH
Q 011858 208 TCRYLAEAHVQA---MQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAK---G-DYEAALEHLVLASMAMIA 280 (476)
Q Consensus 208 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~a~~~~~~ 280 (476)
-++..|..+... .++.+|+.+|++++++.+.. +.++..++.+|... + ........+.+++.....
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~--------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF--------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 344455555544 45689999999999987543 23344444444321 1 112233334444443334
Q ss_pred cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 281 NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
....+..+.++..++..+...|++++|+..+++++.+ ++. ...+..+|.++...|++++|++.|++|+.+.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4455666778888898899899999999999999999 343 5678899999999999999999999999984
Q ss_pred c
Q 011858 361 A 361 (476)
Q Consensus 361 ~ 361 (476)
+
T Consensus 341 P 341 (372)
T 3ly7_A 341 P 341 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 220
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=0.00046 Score=62.66 Aligned_cols=222 Identities=12% Similarity=0.013 Sum_probs=146.0
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011858 219 AMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIY 298 (476)
Q Consensus 219 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 298 (476)
.|+++.|++.+....+......+. .....+...+..++...|+++...+++... ....+..............-+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L---skkr~qlk~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLL---SKKHGQLKLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHH---HTTTTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHH
Confidence 367888887665544444333333 244566778888999999999887766432 222333222222222222222
Q ss_pred H-HcCCHHHHHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHH
Q 011858 299 L-SLCRFDEAVFSYQKALTVFKSSKGDNH---PSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAG 374 (476)
Q Consensus 299 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (476)
. .....+. ......++.......+.. ...+.....|+.+|...|++.+|...+.....-... ..+......
T Consensus 104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve 178 (445)
T 4b4t_P 104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQ 178 (445)
T ss_dssp HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHH
T ss_pred HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHH
Confidence 2 2222221 111222222222211111 125677788999999999999999999988765443 335667788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhccc
Q 011858 375 GLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGER 450 (476)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 450 (476)
.+.....++...+++.+|...+.++.................+...|.++...++|.+|..+|.++.......++.
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 8999999999999999999999998765555544555667788889999999999999999999999877766554
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.29 E-value=2.6e-05 Score=58.11 Aligned_cols=124 Identities=15% Similarity=-0.001 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC--
Q 011858 250 DRRLMALICEAKGDYEAALEHLVLASMAMIANGQ---DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGD-- 324 (476)
Q Consensus 250 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 324 (476)
++..-...+...|.|+.|+-....++.+.....+ ......++..+|..++..++|..|...|+++++..+.....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566677788899999999999988887665444 34667888999999999999999999999999988754211
Q ss_pred ---------------CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Q 011858 325 ---------------NHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIY 383 (476)
Q Consensus 325 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 383 (476)
+.....++.+.++.||..++++++|+..++..-...+ ...+...||.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R----------t~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR----------TPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC----------CHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc----------CHHHHHHHHHHh
Confidence 1123347889999999999999999998765422221 245566666654
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.28 E-value=4.3e-05 Score=63.11 Aligned_cols=107 Identities=8% Similarity=0.074 Sum_probs=83.5
Q ss_pred CchHHHHHHHHHHHHHH-----cCC------hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc-----CCH
Q 011858 326 HPSVASVFVRLADLYHR-----TGK------LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV-----DEP 389 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~-----~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~ 389 (476)
.+.....++..|.+... .|+ ..+|...+++++++.++ .....++..+|.+|... |+.
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~-------~~~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS-------YQEGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT-------HHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC-------cccCHHHHHHHHHHHhCCCccCCCH
Confidence 45566666666655533 233 46788899999998543 23477999999999995 999
Q ss_pred HHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHH
Q 011858 390 EEALKLLQRAMKLLEDK-PGQQSTIAGIEARMGVMFYM-VGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 390 ~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~ 446 (476)
++|.++|++++++.+.. . .++...|..+.. .|++++|..+++++++.-..
T Consensus 221 ekA~~~ferAL~LnP~~~i-------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 221 EKAHTAFEHLTRYCSAHDP-------DHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCTTCS-------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999998854 4 778889999987 59999999999999975433
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.26 E-value=2.4e-05 Score=58.27 Aligned_cols=110 Identities=12% Similarity=-0.020 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCC
Q 011858 122 MSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGET 201 (476)
Q Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 201 (476)
.+++.....++..|.|+.|+-....++.+.......-.+...+.++..+|..++..++|..|...|+++++..+.+....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677778888999999999999999888755444445666678899999999999999999999999999876431111
Q ss_pred -----------------chhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011858 202 -----------------DPRVGETCRYLAEAHVQAMQFDKAEELCKK 231 (476)
Q Consensus 202 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 231 (476)
.....++.+.++.||..++++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 112346889999999999999999988665
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.23 E-value=8.2e-06 Score=55.75 Aligned_cols=72 Identities=14% Similarity=-0.027 Sum_probs=63.7
Q ss_pred CCCchHHHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 011858 71 NPDLGPFLLKLARDTIASGEG--PSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAI 148 (476)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~g~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (476)
+|+.+..+..+|..++..++. .++|..++++++++ +|....+++.+|..++..|+|++|+.+|++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----------EPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577888999999999766532 68999999999996 68888999999999999999999999999999
Q ss_pred hhccc
Q 011858 149 SVPDV 153 (476)
Q Consensus 149 ~~~~~ 153 (476)
+..+.
T Consensus 71 ~~~p~ 75 (93)
T 3bee_A 71 DSNDP 75 (93)
T ss_dssp TCCCT
T ss_pred hhCCC
Confidence 98764
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.13 E-value=2e-05 Score=53.78 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 287 VAAIDVSIGNIYLSLCR---FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.+.++..+|.+++..++ .++|..++++++++ +|....++..+|..++..|+|++|+.+++++++..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35677888888876665 79999999999999 899999999999999999999999999999988643
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=7e-05 Score=55.49 Aligned_cols=87 Identities=16% Similarity=0.044 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Q 011858 305 DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG---KLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISA 381 (476)
Q Consensus 305 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 381 (476)
..+.+.|.+.++. .+....+.+++|+++.+.+ +.++++.++++.++.. .+....++++++|.
T Consensus 15 ~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 15 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAV 79 (152)
T ss_dssp HHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHH
Confidence 3445555555442 3456889999999999988 6779999999998862 12255789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 382 IYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 382 ~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+.+.|+|++|++++++++++.|.+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998876
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.0004 Score=51.48 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCCCC-c-hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 011858 286 EVAAIDVSIGNIYLSLC---RFDEAVFSYQKALTVFKSSKGDNH-P-SVASVFVRLADLYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
....+.+++|.++.+.+ +.++++.++++.++. + | ....+++++|..+.+.|+|++|+.+++.++++-
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34677899999999988 677999999998886 3 4 568899999999999999999999999999985
Q ss_pred c
Q 011858 361 A 361 (476)
Q Consensus 361 ~ 361 (476)
+
T Consensus 102 P 102 (152)
T 1pc2_A 102 P 102 (152)
T ss_dssp T
T ss_pred C
Confidence 4
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.005 Score=55.86 Aligned_cols=217 Identities=10% Similarity=-0.029 Sum_probs=133.9
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 011858 178 GQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALI 257 (476)
Q Consensus 178 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 257 (476)
|++.+|++.+....+..+ .+.+......++..+..++...|+++...+++.-. ....+... .........+-..
T Consensus 30 ~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L---skkr~qlk-~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL---SKKHGQLK-LSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH---HTTTTTSH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHhhhhH-HHHHHHHHHHHHH
Confidence 567777765543333222 23445556677888889999999998876655432 22222211 1111111111111
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Q 011858 258 CEAKGDYEAALEHLVLASMAMIANGQ-----DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASV 332 (476)
Q Consensus 258 ~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 332 (476)
.......+... ....+........ ....+.+...++.+|...|++.+|...+.....-.... .+.......
T Consensus 104 l~~~~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~~~~kve~ 179 (445)
T 4b4t_P 104 LKSSKSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--MEMSEKIQF 179 (445)
T ss_dssp HHHHCTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SCHHHHHHH
T ss_pred HhcCCchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--ccHHHHHHH
Confidence 11122222111 1111111111111 22356777889999999999999999999876443222 233455778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
+.....+|...+++.+|...+.++....... ...+......+...|.++...++|.+|-.+|.++.......
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 8889999999999999999999986543332 23444567788889999999999999999999998876554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.58 E-value=0.0017 Score=47.31 Aligned_cols=107 Identities=17% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC
Q 011858 290 IDVSIGNIYLSLCRF------DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARP 363 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 363 (476)
.+..........|+. ++-++.|++|+..............+..|...|.. ...++.++|.+.|+.++.+.++
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk- 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK- 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH-
Confidence 344444455555666 67778888887764332222345567778888865 5679999999999999997222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 364 VPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+.++...|....++|+..+|.+.+.+++.+.+..
T Consensus 93 --------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 93 --------FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp --------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred --------HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 28899999999999999999999999999876554
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.50 E-value=0.0013 Score=47.90 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKL------RESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
.+.....|..........|+. ++-++.|++|+...+... .......+..+...|.. ...++.++|.+.|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 344566677777777777888 888899999998765432 23444567777777765 6679999999999999
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 400 MKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
+.+.++ .+.++...|..-.++|+..+|.+.+.+|+.+
T Consensus 87 ~~~hKk-------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 87 RANCKK-------FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHCTT-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 987211 1789999999999999999999999999973
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.28 E-value=0.007 Score=43.08 Aligned_cols=89 Identities=16% Similarity=0.017 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Q 011858 304 FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRE---SKSYCENALRIYARPVPGTTAEEIAGGLTEIS 380 (476)
Q Consensus 304 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 380 (476)
...+...|.+.+.. ......+.+++|+++.+..+... ++.+++..+.. ..+...-..++.+|
T Consensus 17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHH
Confidence 34455555555543 33567889999999998887665 66666665542 12336678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 381 AIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
..+.+.|+|++|..+++..+++.|.+.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999987763
No 232
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0041 Score=56.20 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
....++..+|..|...|++++|.+.|.++....... ......+..+..++...+++..+..++.++..+....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~- 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG- 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence 345678899999999999999999999998876542 2357888889999999999999999999998887765
Q ss_pred CCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 408 GQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
+++..........|.++...++|.+|..+|-.+...
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 566556666667788888999999999999887654
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0047 Score=55.86 Aligned_cols=110 Identities=21% Similarity=0.098 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCC
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
.....++..+|..|...|++++|.+.|.++...+.. .......+..+..++...+++..+..++.++..+...
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-- 200 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence 344556788999999999999999999998776532 3456778888888899999999999999999888766
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
+.+...........|.++...++|.+|-.+|-.+...
T Consensus 201 -~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 -GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3344445556666778888889999998888877544
No 234
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0087 Score=54.10 Aligned_cols=145 Identities=12% Similarity=0.007 Sum_probs=66.4
Q ss_pred HHHHhccHHHHHHHHHHHH--HHHHhcCC-CCchHHHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHHHHHc
Q 011858 215 AHVQAMQFDKAEELCKKTL--EIHRAHSE-PASLEESADRRLMALICEAKGDYEAAL----------EHLVLASMAMIAN 281 (476)
Q Consensus 215 ~~~~~g~~~~A~~~~~~al--~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~----------~~~~~a~~~~~~~ 281 (476)
.+...+++++|..+....+ +.....+. .-....+.+|+..+.++...|+..... ..+-.+++.....
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456788999988887665 22222211 112345677888888888888776532 2333333333344
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 282 GQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
.+....+.+++.+-..|...+.+++|..+..++.-. ... ..+...+..++.+|.++.-+++|.+|.+++..|+..++
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--ccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 556677889999999999999999999999887411 100 11234577788899999999999999999999998765
Q ss_pred C
Q 011858 362 R 362 (476)
Q Consensus 362 ~ 362 (476)
.
T Consensus 302 ~ 302 (523)
T 4b4t_S 302 H 302 (523)
T ss_dssp C
T ss_pred c
Confidence 4
No 235
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0062 Score=55.04 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=66.9
Q ss_pred HHHHhCCHHHHHHHHHHHH--HHHHH---cCCChhHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHhc-CC
Q 011858 257 ICEAKGDYEAALEHLVLAS--MAMIA---NGQDNEVAAIDVSIGNIYLSLCRFDEAVFS-------YQKALTVFKSS-KG 323 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~--~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~~~-~~ 323 (476)
.+...+++++|.++-...+ ..... ..-+...+.+|+..+.++...|+....... -...+...+.. ..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888888776554 22221 122445577777777777777776553221 11222222222 22
Q ss_pred CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 324 DNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 324 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+....+..++.+-+.|...+.+++|..+..++. ++.. .......+..++.+|.++.-+++|.+|.+++..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3455678888999999999999999999998874 2221 22455668889999999999999999999999998765
Q ss_pred Hhc
Q 011858 404 EDK 406 (476)
Q Consensus 404 ~~~ 406 (476)
+..
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 543
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.095 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKT 232 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~a 232 (476)
..|..+|..+...|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35666777777777777777777665
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.53 E-value=0.3 Score=41.33 Aligned_cols=180 Identities=11% Similarity=-0.047 Sum_probs=110.9
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 011858 175 SMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLM 254 (476)
Q Consensus 175 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 254 (476)
...|+|-+|.+.|+.......+. .......+.++.-+..+.+.|++..|.++..-.++.+.+...... ......+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~---~~~~~rl 98 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD---DISVARL 98 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS---HHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 44567777777666665554442 234455556666677777778888888887777777777655432 2223444
Q ss_pred HHHHHHhCCHH-HHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHHHHh
Q 011858 255 ALICEAKGDYE-AALEHLVLASMAMIANGQ-DNEVAAIDVSIGNIYLSLCRFDEAVFSYQKA------------LTVFKS 320 (476)
Q Consensus 255 a~~~~~~g~~~-~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------l~~~~~ 320 (476)
..++.....-+ .=.++.++++......+. .......+..+|..|...|++.+|..+|-.. .+...+
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 45544432211 234666777776665544 4556778899999999999999999887321 112221
Q ss_pred cCCCCCchHHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHH
Q 011858 321 SKGDNHPSVASVFVRLAD-LYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
. ..+.+.....+...+. .|...|+...|...++...+..
T Consensus 179 ~-~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 179 V-DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp T-TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred c-CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 1 0124444555544443 4677899999999888777654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.066 Score=51.53 Aligned_cols=121 Identities=11% Similarity=-0.024 Sum_probs=81.6
Q ss_pred hcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHH----HcCC-C-----
Q 011858 219 AMQ-FDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICE---AKGDYEAALEHLVLASMAMI----ANGQ-D----- 284 (476)
Q Consensus 219 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~----~~~~-~----- 284 (476)
.++ ++.|+.++++.....+.. .++...+.+.. ...+--+|+..+.++++... .... +
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~---------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH---------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG---------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch---------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 577888888865543221 11222222211 12344567777777764321 1111 1
Q ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 285 --NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 285 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
+.....+...+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 222345666788888999999999999999999 8889999999999999999999999777655
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.28 E-value=0.12 Score=36.68 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHhcCChhH---HHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 119 DYAMSLHVLAAIYCSLGKFEE---AVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 119 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
....+.+.+|+++....+..+ ++.+++..+... .+...-++++.+|..+++.|+|++|..+++..++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-------~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 445688999999999887766 888888876642 12222367999999999999999999999999998
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=96.23 E-value=0.48 Score=40.39 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHH------------HHHHHHcCCCCCCChHHHHHH
Q 011858 308 VFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCE------------NALRIYARPVPGTTAEEIAGG 375 (476)
Q Consensus 308 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------~a~~~~~~~~~~~~~~~~~~~ 375 (476)
..+.++++....+. |.........+..+|..|.+.+++.+|..+|- -..+...+. . +.....
T Consensus 115 ~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~----~-~~e~dl 188 (336)
T 3lpz_A 115 KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD----E-SHTAPL 188 (336)
T ss_dssp HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS----C-GGGHHH
T ss_pred HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc----C-CccHHH
Confidence 45667777766653 23345567888899999999999999887762 111222221 1 222333
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 011858 376 LT-EISAIYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 376 ~~-~la~~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
+. .....|...++...|...+....+..
T Consensus 189 fiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 189 YCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33 33445677899999999888777655
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.15 E-value=0.077 Score=52.41 Aligned_cols=101 Identities=7% Similarity=-0.106 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCC
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGT 367 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 367 (476)
-..++.+-..|.+.|+.++|...|.+..+...+- ......+|+.|...|.+.|+.++|.++|++..+..-.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG----~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~----- 197 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR----KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT----- 197 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH----TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC----CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----
Confidence 3345555556666666666666665543322111 1112345555666666666666666666655543111
Q ss_pred ChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 011858 368 TAEEIAGGLTEISAIYESVDEP-EEALKLLQRAM 400 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~ 400 (476)
+ + ..+|..+-..+.+.|+. ++|.++|++..
T Consensus 198 -P-D-vvTYntLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 198 -P-D-LLSYAAALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp -C-C-HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred -C-c-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 1 1 34455555555555553 45555555544
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.17 Score=38.53 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=67.8
Q ss_pred HHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 011858 130 IYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETC 209 (476)
Q Consensus 130 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 209 (476)
.....|+++.|.+..++.-. . ..|..+|......|+++-|+.+|.++-+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~~----------~----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------- 63 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLND----------S----ITWERLIQEALAQGNASLAEMIYQTQHSF---------------- 63 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHCC----------H----HHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------
T ss_pred HHHhcCCHHHHHHHHHHhCC----------H----HHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------
Confidence 34578999999988765411 1 34899999999999999999999886432
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011858 210 RYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLA 274 (476)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 274 (476)
..+..+|...|+.+.-. +..++....++ ++....++...|+++++++.|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~----kla~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLS----KMQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHH----HHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHH----HHHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 23344555566664433 33333333332 344456677889999998888653
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=96.09 E-value=0.57 Score=39.95 Aligned_cols=181 Identities=9% Similarity=-0.046 Sum_probs=101.2
Q ss_pred HHcCCh---hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 011858 175 SMLGQV---DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADR 251 (476)
Q Consensus 175 ~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 251 (476)
...|+| -+|.+.|+.....+.+. .......++++.=+..+.+.|++..|.++..-.++.+.+....... ...
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~---~~~ 97 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG---ASR 97 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHH
Confidence 344555 55555555444433221 2333444555555666666677777766666666666655433211 223
Q ss_pred HHHHHHHHHhCCHH-HHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHHHhc
Q 011858 252 RLMALICEAKGDYE-AALEHLVLASMAMIANG-QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQ--------KALTVFKSS 321 (476)
Q Consensus 252 ~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~~~~ 321 (476)
..+..++.....-+ .=..+.++++......+ ........+..+|..|+..+++.+|..+|- ...++.-+.
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34444444433211 22445666666665543 344556778889999999999999988862 111221111
Q ss_pred CCCCCchHHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHH
Q 011858 322 KGDNHPSVASVFVRLAD-LYHRTGKLRESKSYCENALRIY 360 (476)
Q Consensus 322 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~ 360 (476)
.....+.....+...+. .|...++...|...++...+..
T Consensus 178 ~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 178 YKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11223444555554444 4678999999998877776654
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.88 E-value=0.088 Score=52.31 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHH
Q 011858 129 AIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLK 192 (476)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 192 (476)
......|++++|.+..+.. +++ ..|..+|..+...|+++.|+.+|.++-+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~----------~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE----------SAE----MKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC----------CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ehhhhcCCHHHHHHHHHhh----------CcH----hHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3456678888887765322 111 3489999999999999999999998643
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.19 Score=38.34 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=67.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 011858 257 ICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRL 336 (476)
Q Consensus 257 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 336 (476)
+....|+++.|.+..++. .....|..+|......|+++-|+.+|+++-+. ..+
T Consensus 14 LAL~lg~l~~A~e~a~~l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~L 66 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DKL 66 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HHH
T ss_pred HHHhcCCHHHHHHHHHHh-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HHH
Confidence 446789999998887643 12457889999999999999999999886433 234
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011858 337 ADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA 399 (476)
Q Consensus 337 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (476)
..+|...|+.+.-....+.+... + -+.....++..+|+++++++.|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~~------g--------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQTR------E--------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT------T--------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHC------c--------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44566677765544433333221 1 1223345567789999998888654
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.87 E-value=0.26 Score=48.82 Aligned_cols=106 Identities=7% Similarity=-0.083 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 011858 203 PRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 203 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
.....++..+-..|.+.|+.++|..+|.+..+.......+ ...+|+.+-..|.+.|++++|.++|++. ...+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM----~~~G 195 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----TLDMYNAVMLGWARQGAFKELVYVLFMV----KDAG 195 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----CHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHTT
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----CHhHHHHHHHHHHhCCCHHHHHHHHHHH----HHcC
Confidence 3455678899999999999999999998876554332222 2456899999999999999999999976 3455
Q ss_pred CChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCR-FDEAVFSYQKALTV 317 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~ 317 (476)
..++. .+|+.+-..+.+.|+ .++|.+++++..+.
T Consensus 196 ~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 66654 467777778888887 57888999887664
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.088 Score=50.65 Aligned_cols=123 Identities=12% Similarity=-0.002 Sum_probs=82.1
Q ss_pred cCC-HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH--Hc-CChhHHHHHHHHHHHHH----cCCCCCCC----
Q 011858 301 LCR-FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH--RT-GKLRESKSYCENALRIY----ARPVPGTT---- 368 (476)
Q Consensus 301 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~a~~~~----~~~~~~~~---- 368 (476)
.++ ++.|+.++++.... .|... ++...+.+.. .. .+--+|+..+.++++.. .... ..+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~-~~~~~~~ 330 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP-PRDADSA 330 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS-SCCHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc-ccccccc
Confidence 444 57788888886665 44332 2222222222 11 22345777777776432 1110 011
Q ss_pred --hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 011858 369 --AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESA 440 (476)
Q Consensus 369 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 440 (476)
.+.....+...+..+...|+++-|+++.++|+...+..+ ..|..|+.+|..+|+|+.|+-.+..+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF-------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSF-------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh-------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112234566678888899999999999999999999887 89999999999999999999877665
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.54 E-value=0.41 Score=35.66 Aligned_cols=98 Identities=18% Similarity=0.093 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------h
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFK----------S 320 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------~ 320 (476)
-..++.++...|++..++-.+.. ...+.+.+.-+.+|...++|..|+..++..++--- +
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 34568888899999998877753 12345556678899999999999999999883211 1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 321 SKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
.+--+..+.-..+..+|.++...|+.++|+.++......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111123445567888999999999999999999988765
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.33 E-value=0.35 Score=42.92 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=77.7
Q ss_pred HHHcCChhHHHHHHHHHHHHHcCCCCCC---Ch----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 340 YHRTGKLRESKSYCENALRIYARPVPGT---TA----------EEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 340 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
....|+.+.|...+++++.+++-..... .. .....+...++..+...|++.+++..+...+...+-.
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3456788888888888888765321110 00 0123455567788889999999999999998776655
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH-hcccCchh
Q 011858 407 PGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRA-SGERKSAF 454 (476)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~ 454 (476)
. .++..+..++...|+..+|++.|+++...+.+ ++....+.
T Consensus 205 E-------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 205 E-------PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp H-------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3 67888999999999999999999999887654 45444443
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.29 E-value=0.64 Score=41.27 Aligned_cols=107 Identities=14% Similarity=-0.007 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhccccCCCch---h----------HHHHHhHhhHHHHHHHcCChhhHHHHHHHHH
Q 011858 125 HVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADH---A----------LAKFSGYMQLGDTCSMLGQVDRSIGCYEEGL 191 (476)
Q Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 191 (476)
...|......|+.+.|...+++|+.+..-..-.+. . .....+...++..+...|++.+++..+..++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445678999999999999998742211111 0 1112455667788889999999999999988
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Q 011858 192 KIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAH 239 (476)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 239 (476)
.. +|..-.++..+..++...|+..+|+..|++..+.....
T Consensus 199 ~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~e 238 (388)
T 2ff4_A 199 FE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 238 (388)
T ss_dssp HH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 76 67777789999999999999999999999998876553
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.20 E-value=0.53 Score=33.67 Aligned_cols=65 Identities=9% Similarity=-0.119 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 248 SADRRLMALICEAKGDYE---AALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
..+.+++|+++....+.+ +++..++..+. . .......+++.+|..+.+.|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~---~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---H--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456788888888877654 56666665433 2 23356788999999999999999999999999987
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.06 E-value=0.5 Score=34.30 Aligned_cols=66 Identities=9% Similarity=-0.122 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 247 ESADRRLMALICEAKGDYE---AALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 247 ~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
...+.+++|+++....+.+ +++..++..+ ... ....-.+++.+|..+++.|+|++|..+.+..+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~---~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIY---KEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH---HHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3556788899998887665 5666666543 332 2346678899999999999999999999999998
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.65 E-value=0.77 Score=47.45 Aligned_cols=102 Identities=11% Similarity=0.010 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------------HHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAM-----------------IANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
.+.+|.++...|++++|.++|+++-.-+ ............|..+..++...+.++.++++.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4778999999999999999998762111 11111222345677888899999999999999999
Q ss_pred HHHHHHhcCCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011858 314 ALTVFKSSKGDNHPS-VASVFVRLADLYHRTGKLRESKSYCENA 356 (476)
Q Consensus 314 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 356 (476)
|++... .+.+. ....|.++-..+...|+|++|...+...
T Consensus 925 Ai~~~~----~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASKE----TDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHCC----SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhcc----CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 988632 22332 3346788888899999999997776443
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.44 E-value=2 Score=36.38 Aligned_cols=170 Identities=12% Similarity=-0.052 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVA 330 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 330 (476)
+..+..=|..++++++|++.+.. -+..+.+.|++..|.+...-.++.+.+.. .+...
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~--------------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~ 92 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ--------------------GALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDD 92 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH--------------------HHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCH
Confidence 44445555566666666665544 34555666777777776666666665542 22233
Q ss_pred HHHHHHHHHHHHcCChh-HHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Q 011858 331 SVFVRLADLYHRTGKLR-ESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRA---------- 399 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------- 399 (476)
.....+..++.....-+ .=..+.++++....+. +.........+..+|..|...|++.+|..+|-..
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~ 170 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVD 170 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHH
Confidence 44555555554433222 3356777888777654 2223344678889999999999999999977321
Q ss_pred --HHHHHhccCCCchHHHHHHHHH-HHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 400 --MKLLEDKPGQQSTIAGIEARMG-VMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 400 --~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
.+.....++........+...+ ..|...|+...|...++...+...
T Consensus 171 ~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 171 LLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 1122221112222233333333 356678999999999998877653
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.10 E-value=1.2 Score=32.39 Aligned_cols=69 Identities=7% Similarity=-0.025 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 286 EVAAIDVSIGNIYLSLCRFD---EAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 286 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
....+.+++|+++....+.+ +++.+++..+.. +....-.+++.||..+.++|+|++|+.+.+..+++-+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 44667788999999887664 566666665553 1335778999999999999999999999999999843
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.89 E-value=1.2 Score=31.83 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 288 AAIDVSIGNIYLSLCRF---DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
..+.+++|+++.+..+. .+++..++..+.. +....-.+++.||..+.+.|+|++|+.+.+..+++-+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 46778888888887765 4577777666654 1235688999999999999999999999999998743
No 257
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=93.46 E-value=2.8 Score=35.55 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=65.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHH
Q 011858 274 ASMAMIANGQDNEVAAIDVSIGNIYLSLCR--FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKS 351 (476)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 351 (476)
.+-++-..+.-.....++.+||.+-...-- ...++..|.+++...+..+++.+ ..-|..+|..+.+.+++.+|+.
T Consensus 241 LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~ 317 (472)
T 3re2_A 241 LLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIA 317 (472)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHH
Confidence 333333444444556667777776554322 23489999999999999886544 4567788999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCh
Q 011858 352 YCENALRIYARPVPGTTA 369 (476)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~ 369 (476)
.+-++-...+.-+...++
T Consensus 318 ~WA~Aa~Vi~~YNY~reD 335 (472)
T 3re2_A 318 SWVDAGYVAGKYNYSKDD 335 (472)
T ss_dssp HHHHHHHHHTTSCCCGGG
T ss_pred HHHHHHHHHHHcCCCccH
Confidence 999999988775433333
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.16 E-value=0.51 Score=43.15 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
..++..+|.+......++.|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|-+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 446788999999999999999999999999 888899999999999999999999988888764
No 259
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.49 E-value=5.4 Score=35.33 Aligned_cols=131 Identities=10% Similarity=0.031 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----------CCChhHHHHHHHH
Q 011858 226 EELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIAN-----------GQDNEVAAIDVSI 294 (476)
Q Consensus 226 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~~l 294 (476)
++.|+..+.-+...-++ ...+ ..+..+.....+.++|++++++........ ........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~lv---~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LSVV---KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHH---HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHHH---HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45556655555543333 1111 112345566788999999988653322211 0123345667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q 011858 295 GNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYA 361 (476)
Q Consensus 295 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 361 (476)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+....-..+....
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998888765444445667777788888899999988877777776654
No 260
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=92.45 E-value=4.3 Score=35.26 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 285 NEVAAIDVSIGNIYLSLCRF--DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
.....++.+||.+-...--. ..++..|.+++...+..+++.+ ..-|..+|..+++.+++.+|+..+-++-...+.
T Consensus 274 ~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 274 ERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 33455566666655432211 2488999999999998875544 456778899999999999999999999988877
Q ss_pred CCCCCChHH
Q 011858 363 PVPGTTAEE 371 (476)
Q Consensus 363 ~~~~~~~~~ 371 (476)
-+...++.+
T Consensus 351 YNY~reDeE 359 (550)
T 3u84_A 351 YNYCREDEE 359 (550)
T ss_dssp SCCCGGGHH
T ss_pred cCCCcchHH
Confidence 543333333
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.39 E-value=2.6 Score=43.60 Aligned_cols=103 Identities=13% Similarity=0.008 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---------------CCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVFKSS---------------KGDNHPSVASVFVRLADLYHRTGKLRESKSYCEN 355 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 355 (476)
.+.+|.++...|++++|..+|+++-.-.... ...........|..+..++.+.+.++.++++.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4779999999999999999998863211000 0001122345677888899999999999999999
Q ss_pred HHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011858 356 ALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQ 397 (476)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (476)
|++.... .+.......+.++-..+...|+|++|...+.
T Consensus 925 Ai~~~~~----~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 925 ADASKET----DDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHCCS----CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHhccC----CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9987543 1232334467888888999999999977664
No 262
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=92.02 E-value=4.2 Score=33.03 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Q 011858 346 LRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES-VDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 346 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~ 404 (476)
.+.|...|++|.++..... .+.+|.......+.+..|.. +++.++|....+++..-.-
T Consensus 172 ~e~a~~aY~~A~~iA~~~L-~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3578899999999876544 44455555555555555554 7999999988888776543
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.88 E-value=0.46 Score=43.45 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=57.2
Q ss_pred HhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 165 SGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 165 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
.++..||.+......+..|..+|.+|..+ .|..+..++.||.+....|+.-+|+-+|.+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 46788999999999999999999999998 788899999999999999999999999999874
No 264
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=91.78 E-value=4.6 Score=32.95 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH--HhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHH-cC
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIH--RAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIA-NG 282 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~-~~ 282 (476)
.-+..++.+..+.++|++...+.+++.+.. ..... .-.+.+..+|-. .|....+.+.+... +.-.. .+
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~-------EERnLLSvaYKNvig~rR~swRiissi-eqke~~k~ 80 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTV-------EERNLLSVAYKNVIGARRASWRIISSI-EQKEESRG 80 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCH-------HHHHHHHHHHHHhhcchHHHHHHHHHH-HHHhhccC
Confidence 345677888888999999999999987743 11111 112333333321 22223333333221 11111 11
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHHHHcCC----------hhHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG---DNHPSVASVFVRLADLYHRTGK----------LRES 349 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~----------~~~A 349 (476)
+... ..+..-|.. .--.+=...+...+.+.....- .+.......+-..|..|...-. .+.|
T Consensus 81 ~~~~-----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 154 (260)
T 1o9d_A 81 NEEH-----VNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 154 (260)
T ss_dssp CHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHH-----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 1111 111111111 1112223444555555444321 1111223333445555543222 3578
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 011858 350 KSYCENALRIYARPVPGTTAEEIAGGLTEISAIYE-SVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 403 (476)
...|++|.++..... .+.+|.......+.+..|. -+++.++|....+++..-.
T Consensus 155 ~~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 155 LTAYKAAQDIATTEL-APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 889999999987543 4445555555555555555 4899999988877776543
No 265
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=91.54 E-value=4.5 Score=32.44 Aligned_cols=184 Identities=16% Similarity=0.111 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCChh
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIANGQDNE 286 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 286 (476)
-+..++.+..+.++|++...+.+++.+....... .-.+.++.+|-. .|....+...+......-...++...
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~-------EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~ 79 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTV-------EERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDK 79 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHH
Confidence 3456788888899999999999988774322111 112333333321 12222233333221110000111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHHHHcC----------ChhHHHHHH
Q 011858 287 VAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG---DNHPSVASVFVRLADLYHRTG----------KLRESKSYC 353 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~ 353 (476)
..+..-|.. .=-++=.......+.+.....- .+.......+-..|..|.-.- -.+.|...|
T Consensus 80 -----~~~i~~yr~-kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY 153 (234)
T 2br9_A 80 -----LKMIREYRQ-MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAY 153 (234)
T ss_dssp -----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHH-HHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 111111111 1112223344445554443211 111122333334455554322 235788899
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHh
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYE-SVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 405 (476)
++|.++..... .+.+|.......+.+..|. -+++.++|....+++..-.-.
T Consensus 154 ~~A~~iA~~~L-~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 154 KAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999987543 4445555555555555555 489999999988887765544
No 266
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=91.47 E-value=4.8 Score=32.53 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCChhH
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIANGQDNEV 287 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~ 287 (476)
+..++.+....++|++...+.+++.+....... .-.+.++.+|-. .|....+...+....+.-...+.....
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~-------EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~ 79 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSN-------EERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKI 79 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCH-------HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHH
Confidence 556788888999999999998888764222111 112333333321 222333333332111110001111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---CCC--chHHHHHHHHHHHHHHcCC----------hhHHHHH
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG---DNH--PSVASVFVRLADLYHRTGK----------LRESKSY 352 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~--~~~~~~~~~la~~~~~~g~----------~~~A~~~ 352 (476)
..+-.....+- .+=...+...+.+.....- .+. ......+-..|..|.-.-. .+.|...
T Consensus 80 ~~i~~yr~kie------~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~a 153 (248)
T 3uzd_A 80 EMVRAYREKIE------KELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKA 153 (248)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHH
Confidence 11111111111 1222334444444333211 112 2333344445666543221 3578889
Q ss_pred HHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHh
Q 011858 353 CENALRIYARPVPGTTAEEIAGGLTEISAIYE-SVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 405 (476)
|++|.++..... .+.+|.......+.+..|. -+++.++|....+++..-.-.
T Consensus 154 Y~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 154 YSEAHEISKEHM-QPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999886544 4445555555555555555 489999999988887765433
No 267
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=91.12 E-value=5 Score=32.15 Aligned_cols=180 Identities=18% Similarity=0.144 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCCh-
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIANGQDN- 285 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~- 285 (476)
-+..+|.+..+.++|++...+.+++.+....... .-.+.++.+|-. .|....+...+....+.-...+...
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~-------EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~ 82 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSC-------EERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEK 82 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCH-------HHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHH
Confidence 3566788888999999999999888764322111 113333444322 2333333333322111110011111
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHHHH-----cCC-----hhHHHH
Q 011858 286 -EVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG---DNHPSVASVFVRLADLYHR-----TGK-----LRESKS 351 (476)
Q Consensus 286 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 351 (476)
....-+ ...+ -.+=...+...+.+.....- .+.......+-..|..|.- .|+ .+.|..
T Consensus 83 ~~~i~~y--r~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREY--REKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHH--HHHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHH--HHHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 111111 0011 01222334444444433210 1111223333445665543 233 367888
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 011858 352 YCENALRIYARPVPGTTAEEIAGGLTEISAIYE-SVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 403 (476)
.|++|.++..... .+.+|.......+.+..|. -+++.++|....+++..-.
T Consensus 155 aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 155 AYQEAMDISKKEM-PPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999886544 4445555555555555554 5799999998888776544
No 268
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.70 E-value=8.5 Score=34.07 Aligned_cols=138 Identities=10% Similarity=-0.066 Sum_probs=91.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCC--------CchhHHH
Q 011858 92 PSKALDYAIRASKSFERCAAAEAEPSLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRG--------ADHALAK 163 (476)
Q Consensus 92 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~ 163 (476)
.+.-+.+|+..+.-++...+ ....+. .+..+.....+.++|++++++.......... .......
T Consensus 55 ~~~~~~ly~~fi~~f~~kin-----~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~ 126 (393)
T 4b4t_O 55 TPLRLRLYDNFVSKFYDKIN-----QLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGI 126 (393)
T ss_dssp CCCCHHHHHHHHHHHHHHSC-----SHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSH
T ss_pred chHHHHHHHHHHHHHHHhcC-----HHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhH
Confidence 44556788888777765533 122221 2344556678899999999987654421110 1111223
Q ss_pred HHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 011858 164 FSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHR 237 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 237 (476)
+.+...++..|...|+.++|..+++++-......-+.+.......+...+..+...+++..+....-..+....
T Consensus 127 l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 127 LLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 35577889999999999999999999988877653333345566677778888889999887777777666554
No 269
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.50 E-value=4.3 Score=30.39 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------
Q 011858 209 CRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMI--------- 279 (476)
Q Consensus 209 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------- 279 (476)
-..++.+++..|+|..++-.+... ..+.+.+.-+.||....++..|+..++..+.--.
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~l-------------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHKL-------------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTC-------------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHhc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 455677888899998877655432 2344466678899999999999999998762110
Q ss_pred ---HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 280 ---ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTV 317 (476)
Q Consensus 280 ---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 317 (476)
-.-+..+.-..+..+|.++...|+.++|+.++......
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 11123445667888999999999999999999988775
No 270
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=89.94 E-value=9.3 Score=33.32 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=63.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 276 MAMIANGQDNEVAAIDVSIGNIYLSLCR--FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
-++-..+.-.....++.+||.+-...-. ...++..|++|+...+..+.+.+ ..-|..+|-.+.+.+++.+|+..+
T Consensus 250 WlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~w 326 (489)
T 4gq4_A 250 WLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAW 326 (489)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHh
Confidence 3333444444556666777766543322 23478899999999999886554 566788899999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 011858 354 ENALRIYARPVPG 366 (476)
Q Consensus 354 ~~a~~~~~~~~~~ 366 (476)
-++-.....-...
T Consensus 327 a~aa~Vi~~YnY~ 339 (489)
T 4gq4_A 327 ADTATVIQDYNYC 339 (489)
T ss_dssp HHHHHHHTTSCCC
T ss_pred hhhhhhhhhcccc
Confidence 9999888775433
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.60 E-value=5.1 Score=32.84 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=49.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
-+++.|+.++|+......++. .|..+.....+.++++-.|+++.|...++.+.++.+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 456788999999999888876 7888999999999999999999999998888877543
No 272
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=89.54 E-value=7.5 Score=31.69 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH---HhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcC
Q 011858 207 ETCRYLAEAHVQAMQFDKAEELCKKTLEIH---RAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIANG 282 (476)
Q Consensus 207 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~ 282 (476)
.-+..++.+..+.++|++...+.+++.+.. ..... .-.+.++.+|-. .|....+...+... +.-....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~-------EERnLLSvAyKNvIg~rR~swRiissi-eqke~~k 100 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTV-------EERNLLSVAYKNAVGSRRSSWRIISSV-EQKEHSR 100 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCH-------HHHHHHHHHHHHHhccchHHHHHHHHH-HHHhhcc
Confidence 345567888888999999999999988743 22111 112333333322 22222333333221 1111111
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHHHHcC----------ChhHH
Q 011858 283 QDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKG---DNHPSVASVFVRLADLYHRTG----------KLRES 349 (476)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g----------~~~~A 349 (476)
..... ..+..-|.. .=-++=...+...+.+.....- .+.......+-..|..|...- -.+.|
T Consensus 101 ~~~~~----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 101 NAEDA----SKMCGKYRS-KVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp TCHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 11111 111111111 1112223344455554443221 111122333334455554322 23578
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh
Q 011858 350 KSYCENALRIYARPVPGTTAEEIAGGLTEISAIYES-VDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 405 (476)
...|++|.++. ... .+.+|.......+.+..|.. +++.++|....+++..-.-.
T Consensus 176 ~~aY~~A~~iA-~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 176 LKAYKDATVVA-KDL-EPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHH-TTS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88999999999 544 44555555555555555554 89999999988888766544
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.10 E-value=19 Score=35.81 Aligned_cols=212 Identities=17% Similarity=0.085 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhc
Q 011858 120 YAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALG 199 (476)
Q Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 199 (476)
...+...+|.++ .|+.++++..+.+.+... +...+....-+++.+|.++...+ .+++.++...+.-.....+
T Consensus 375 k~sA~aSLGlIh--~g~~~~gl~~L~~yL~~~----~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~ 446 (963)
T 4ady_A 375 KFTATASLGVIH--KGNLLEGKKVMAPYLPGS----RASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSG 446 (963)
T ss_dssp HHHHHHHHHHHT--SSCTTTHHHHHTTTSTTS----CCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHhhhhc--cCchHHHHHHHHHhcccc----CCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCcccccc
Confidence 344455555554 477778887777655421 12233334456788888877665 3677766666543210000
Q ss_pred C--CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 200 E--TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 200 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
+ .......+...||.++.-.++ +++...+...+. ... ......+-..+|.++.-.|+-+-....+..+.
T Consensus 447 ~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~---dd~---~~~~~~AalALGli~vGTgn~~ai~~LL~~~~-- 517 (963)
T 4ady_A 447 DEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY---NDS---ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ-- 517 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH---TCC---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh---cCC---HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh--
Confidence 0 012233456678888776665 345555555443 111 11122345667888888888765555555432
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011858 278 MIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENAL 357 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 357 (476)
...+.. ..-...+|..+...|+.+.+....+..... .+......+-..+|..|...|+...-..++..+.
T Consensus 518 --e~~~e~--vrR~aalgLGll~~g~~e~~~~li~~L~~~------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 518 --ETQHGN--ITRGLAVGLALINYGRQELADDLITKMLAS------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp --HCSCHH--HHHHHHHHHHHHTTTCGGGGHHHHHHHHHC------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred --ccCcHH--HHHHHHHHHHhhhCCChHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 222222 222234444455667766655554443322 1222223345567888888999654444665555
Q ss_pred H
Q 011858 358 R 358 (476)
Q Consensus 358 ~ 358 (476)
.
T Consensus 588 ~ 588 (963)
T 4ady_A 588 S 588 (963)
T ss_dssp H
T ss_pred c
Confidence 3
No 274
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.78 E-value=10 Score=30.04 Aligned_cols=83 Identities=10% Similarity=0.052 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhh
Q 011858 349 SKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 349 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (476)
=..++++++..+.....-.+++....+|...+.. . +++...|..... . +.....+..|...|..+...|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~----~-~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAH----H-HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHH----T-TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHH----C-CcchhHHHHHHHHHHHHHHcC
Confidence 4678888888876542223445566666666653 2 345555554332 2 455566788889999999999
Q ss_pred cHHHHHHHHHHHHH
Q 011858 429 RYEEARSSFESAIA 442 (476)
Q Consensus 429 ~~~~A~~~~~~a~~ 442 (476)
++.+|...|+.+++
T Consensus 165 ~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 165 LFQKADEVYQKGKR 178 (223)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999986
No 275
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=86.71 E-value=11 Score=30.26 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHH
Q 011858 305 DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRI 359 (476)
Q Consensus 305 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 359 (476)
+.|...|++|.+++.....+.+|.......+.+..|.. .++.++|....+++++-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999877777888877777777777766 79999998887777654
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.46 E-value=3.4 Score=33.85 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 011858 173 TCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRR 252 (476)
Q Consensus 173 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 252 (476)
.....|+.++|+......++. .|..+.....+..++.-.|+++.|.+.++.+.++.+... ..+..|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~-----~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-----PGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-----HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh-----HHHHHHH
Confidence 345678999999988888765 778888888999999999999999999999888775521 1111122
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 253 LMALICEAKGDYEAALEHLVLASMAMIA------NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKS 320 (476)
Q Consensus 253 ~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 320 (476)
.+-.+- . ++. +.+.. .+. +........-+......|+.++|...-.++++....
T Consensus 73 ~lI~aE-------~----~R~--~vfaG~~~P~~~g~-~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 73 HLVKAA-------Q----ARK--DFAQGAATAKVLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHH-------H----HHH--HHTTSCCCEECCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-------H----HHH--HHHcCCCCCCCCCC-CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111110 0 010 11110 111 222333444566677789999999999999887533
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=86.31 E-value=2.1 Score=27.88 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 412 TIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
..+..+...+..+...|+|++|+++.++|...+.+.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999877655
No 278
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=86.17 E-value=12 Score=30.37 Aligned_cols=177 Identities=8% Similarity=-0.027 Sum_probs=93.6
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-AMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..++.+....++|++...+.+++.+.. .....+-.+.++.+|-. .|....+...+....+.....+..
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~-------~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~--- 103 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMD-------VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE--- 103 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH---
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccH---
Confidence 5677888889999999999888877641 11222223333443321 233333333332221111111111
Q ss_pred HHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHH-----HcCCChhHHHHHHHHHHHHHHc-----CC-----HHHHHH
Q 011858 246 EESADRRLMALICEAKGDYE-AALEHLVLASMAMI-----ANGQDNEVAAIDVSIGNIYLSL-----CR-----FDEAVF 309 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~l~~~~~~~-----g~-----~~~A~~ 309 (476)
. ...+..-|. .+.+ +-...+...+.++. ...........+-..|..|... |+ .+.|..
T Consensus 104 ~----~~~~i~~yr--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~ 177 (261)
T 3ubw_A 104 D----KLKMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV 177 (261)
T ss_dssp H----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 0 011111111 1111 11222233333322 1222223333344456665432 21 367889
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHH
Q 011858 310 SYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRI 359 (476)
Q Consensus 310 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 359 (476)
.|++|.+++.....+.+|.......+.+..|.. +++.++|....+++++-
T Consensus 178 aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 178 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999877777888887777788777766 68999998887777654
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=85.22 E-value=5.1 Score=30.02 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhc
Q 011858 350 KSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGR 429 (476)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (476)
..++++++..+.....-.+.+....++...+... ++ +.++|.... .. +.....+..|...|..+...|+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~----~~-~IG~~~AlfY~~wA~~lE~~~~ 111 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLH----NQ-GIGVSLAQFYISWAEEYEAREN 111 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHH----HT-TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHH----HC-CcchhhHHHHHHHHHHHHHcCC
Confidence 5567788777655322234555667777777653 33 444554432 22 4555667888899999999999
Q ss_pred HHHHHHHHHHHHH
Q 011858 430 YEEARSSFESAIA 442 (476)
Q Consensus 430 ~~~A~~~~~~a~~ 442 (476)
+.+|.+.|+.+++
T Consensus 112 ~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 112 FRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 280
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=84.99 E-value=13 Score=29.54 Aligned_cols=181 Identities=16% Similarity=0.138 Sum_probs=96.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCChhHHH
Q 011858 211 YLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEA-KGDYEAALEHLVLASMAMIANGQDNEVAA 289 (476)
Q Consensus 211 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 289 (476)
.++.+....++|++...+.+++.+.....+..- ...-.+.++.+|-. .|....+.+.+... -.+......
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eL---t~EERnLLSvAYKNvig~rR~swRiissi---Eqkek~~~~--- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEF---DDEERHLLTLCIKHKISDYRTMTSQVLQE---QTKQLNNDE--- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHSCSCHH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCC---CHHHHHHHHHHHHHhhcccHHHHHHHHHH---HHHHcCCHH---
Confidence 678888899999999999999887321111110 11112333333321 22222333333221 111111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH-----HcCChhHHHHHHHHHHHHHcCCC
Q 011858 290 IDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH-----RTGKLRESKSYCENALRIYARPV 364 (476)
Q Consensus 290 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~~~~~~~~ 364 (476)
...+..-|... --.+=.......+.+.....-+........+-..|..|. ..|+.+.|...|+.|.++.....
T Consensus 82 -~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L 159 (227)
T 2o8p_A 82 -LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP 159 (227)
T ss_dssp -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence 11122222111 112334566677777766543332223334444555554 35668899999999999987543
Q ss_pred CCCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHH
Q 011858 365 PGTTAEEIAGGLTEISA-IYESVDEPEEALKLLQRAMKLL 403 (476)
Q Consensus 365 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~ 403 (476)
.+.+|.......+.+. .|.-+++.++|....++++.+.
T Consensus 160 -~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 160 -DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp -GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3344444444444444 4556899999999999997764
No 281
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=84.73 E-value=15 Score=30.01 Aligned_cols=179 Identities=8% Similarity=-0.005 Sum_probs=94.8
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-AMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..++.+..+.++|++...+.+++.+.. ........-...+..+|-. .|....+.+.+....+.....+..
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~-----~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~--- 82 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSL-----GSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE--- 82 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTC-----SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-----CCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcH---
Confidence 5678888999999999999999988742 0011122222333333321 233333333333221111111111
Q ss_pred HHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHcCC----------HHHHHH
Q 011858 246 EESADRRLMALICEAKGDYE-AALEHLVLASMAMIA-----NGQDNEVAAIDVSIGNIYLSLCR----------FDEAVF 309 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~ 309 (476)
. ...+..-|. .+.+ +-...+...+.++.. ..+.......+-..|..|...-. .+.|..
T Consensus 83 ~----~~~~i~~yr--~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~ 156 (260)
T 1o9d_A 83 E----HVNSIREYR--SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT 156 (260)
T ss_dssp H----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred H----HHHHHHHHH--HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHH
Confidence 0 111111111 1111 112223333333321 22222334444445665553322 257889
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHH
Q 011858 310 SYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRI 359 (476)
Q Consensus 310 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 359 (476)
.|++|.+++.....+.+|.......+.+..|.. +++.++|....++++.-
T Consensus 157 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 157 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999877777888877777777777766 79999998887777654
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.93 E-value=37 Score=33.91 Aligned_cols=282 Identities=13% Similarity=0.065 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCC---ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEP---SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISV 150 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (476)
.+.+++.+|..+...+ .+++.++...+.--... .|. ......+...||.++.-.++ +++.+.+...+.-
T Consensus 412 k~GAllaLGli~ag~~---~~~~~lL~~~L~~~~~~----~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d 483 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFG---RDTTDYLKNIIVENSGT----SGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN 483 (963)
T ss_dssp HHHHHHHHHHHTTTTT---HHHHHHHHHHHHHHSSC----CSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHcCcccc----ccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc
Confidence 4556677776665443 35666555554421100 000 12233455678888776665 5666666666543
Q ss_pred ccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHHHHHHHHH
Q 011858 151 PDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFDKAEELCK 230 (476)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 230 (476)
.. ......+-+.+|.++...|+-+-....+..+.+ ..+.. ..-...+|..+...|+.+.+....+
T Consensus 484 d~-------~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~-vrR~aalgLGll~~g~~e~~~~li~ 548 (963)
T 4ady_A 484 DS-------ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGN-ITRGLAVGLALINYGRQELADDLIT 548 (963)
T ss_dssp CC-------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHH-HHHHHHHHHHHHTTTCGGGGHHHHH
T ss_pred CC-------HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHH-HHHHHHHHHHhhhCCChHHHHHHHH
Confidence 21 111123457788888888886655554444432 12222 2222334444445666665554444
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011858 231 KTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFS 310 (476)
Q Consensus 231 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 310 (476)
... ...++ .....+-..+|..|...|+...-..++..+. ...++.....+...+|.+ ..|+.+.+...
T Consensus 549 ~L~----~~~dp--~vRygaa~alglAyaGTGn~~aIq~LL~~~~----~d~~d~VRraAViaLGlI--~~g~~e~v~rl 616 (963)
T 4ady_A 549 KML----ASDES--LLRYGGAFTIALAYAGTGNNSAVKRLLHVAV----SDSNDDVRRAAVIALGFV--LLRDYTTVPRI 616 (963)
T ss_dssp HHH----HCSCH--HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHH--TSSSCSSHHHH
T ss_pred HHH----hCCCH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc----cCCcHHHHHHHHHHHHhh--ccCCHHHHHHH
Confidence 332 22222 2233334567778888999655544665543 222222223333444443 44443322222
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCH-
Q 011858 311 YQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP- 389 (476)
Q Consensus 311 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 389 (476)
+ ....+. .+......+-..+|.+....++ .+++..+..... +.+......+...||.+.....+-
T Consensus 617 v----~~L~~~--~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-------D~d~~Vrq~Ai~ALG~Ig~gtnna~ 682 (963)
T 4ady_A 617 V----QLLSKS--HNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-------DPVDFVRQAAMIALSMILIQQTEKL 682 (963)
T ss_dssp T----TTGGGC--SCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHSTTCCTTT
T ss_pred H----HHHHhc--CCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHhcCCcccc
Confidence 2 222111 1111112222333433322232 567776666542 233444445666677665544432
Q ss_pred -HHHHHHHHHHHHHHH
Q 011858 390 -EEALKLLQRAMKLLE 404 (476)
Q Consensus 390 -~~A~~~~~~a~~~~~ 404 (476)
.+.....++......
T Consensus 683 ~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 683 NPQVADINKNFLSVIT 698 (963)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 123334444444443
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.66 E-value=14 Score=28.78 Aligned_cols=86 Identities=9% Similarity=-0.002 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcH
Q 011858 351 SYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRY 430 (476)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (476)
..+++++..+.....=.+++....+|...+..+ ..++..++.+.|.-.... +.....+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 678888888776432235566677777777765 234466888888765543 44455678889999999999999
Q ss_pred HHHHHHHHHHHH
Q 011858 431 EEARSSFESAIA 442 (476)
Q Consensus 431 ~~A~~~~~~a~~ 442 (476)
++|.+.|+.+++
T Consensus 132 ~~A~~Vy~~GI~ 143 (202)
T 3esl_A 132 LEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=83.26 E-value=14 Score=29.22 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHc
Q 011858 308 VFSYQKALTVFKSSK-GDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESV 386 (476)
Q Consensus 308 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (476)
...+++++..+.... -.+++....+|..++.. .+.+..+|.-....- + | ...+..|...|..+...
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~--I--G---~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHH--I--G---QESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTT--C--S---TTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCC--c--c---hhHHHHHHHHHHHHHHc
Confidence 456677766654321 13466667777777763 246667776655431 1 2 23477888999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011858 387 DEPEEALKLLQRAMKLL 403 (476)
Q Consensus 387 g~~~~A~~~~~~a~~~~ 403 (476)
|++.+|...|+..++..
T Consensus 164 g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 164 GLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999998754
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.67 E-value=4.6 Score=29.79 Aligned_cols=83 Identities=6% Similarity=0.044 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhh
Q 011858 349 SKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVG 428 (476)
Q Consensus 349 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (476)
=..++++++..+.....=.+++....++...+... +++.+.|.... .. +.....+..|...|..+...|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~----~~-~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLY----NH-GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHH----TT-TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHH----HC-CCcHHHHHHHHHHHHHHHHcC
Confidence 34566777776654321234455566666666542 23555555433 22 455566788899999999999
Q ss_pred cHHHHHHHHHHHHH
Q 011858 429 RYEEARSSFESAIA 442 (476)
Q Consensus 429 ~~~~A~~~~~~a~~ 442 (476)
++++|.+.|+.+++
T Consensus 116 ~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 116 ELQHASAVLQRGIQ 129 (152)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999986
No 286
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=81.42 E-value=6.7 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 76 PFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 76 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.....+|+.+...| ||+.|+.+|+.+++...+...
T Consensus 13 ~e~~k~ARe~Al~G-nYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 13 VENVKLAREYALLG-NYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999 699999999999999888765
No 287
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=80.91 E-value=21 Score=29.08 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHH
Q 011858 305 DEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRIY 360 (476)
Q Consensus 305 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 360 (476)
+.|...|++|.+++ ....+.+|.......+.+..|.. +++.++|....+++++-.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57889999999999 76677788777777777777766 799999998888887654
No 288
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=80.60 E-value=21 Score=28.84 Aligned_cols=177 Identities=10% Similarity=0.041 Sum_probs=95.6
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-AMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..++.+....++|++...+.+++.+.. ......-.+.++.+|-. .|....+...+....+.....+.....
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~-------~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~ 79 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELN-------EPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKI 79 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHH
Confidence 5678889999999999999888887641 11222223334444422 233333333332222211111222111
Q ss_pred HHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH-----HcCCC--hhHHHHHHHHHHHHHHcCC----------HHHH
Q 011858 246 EESADRRLMALICEAKGDY-EAALEHLVLASMAMI-----ANGQD--NEVAAIDVSIGNIYLSLCR----------FDEA 307 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~-----~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A 307 (476)
.. ..-|. .+. .+-...+...+.++. ..... ......+-..|..|...-. .+.|
T Consensus 80 ~~-------i~~yr--~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a 150 (248)
T 3uzd_A 80 EM-------VRAYR--EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS 150 (248)
T ss_dssp HH-------HHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HH-------HHHHH--HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 11 11111 111 111222233333222 22233 3444445556666654321 3678
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHH
Q 011858 308 VFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRI 359 (476)
Q Consensus 308 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 359 (476)
...|++|.+++.....+.+|.......+.+..|.. +++.++|....+++++-
T Consensus 151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999877777888887777778777666 78999998887777654
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=80.33 E-value=7.2 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 368 TAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
.+...+..+...+..+...|+|++|+++.+++.....+.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 344556777888999999999999999999998877655
No 290
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=79.91 E-value=23 Score=28.91 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=56.1
Q ss_pred HHHHhHhhHHHHHHHcCC----------hhhHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHH-HhccHHHHHHH
Q 011858 162 AKFSGYMQLGDTCSMLGQ----------VDRSIGCYEEGLKIQIEAL--GETDPRVGETCRYLAEAHV-QAMQFDKAEEL 228 (476)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 228 (476)
..+..+...|..|..... .+.|...|+.|.++....+ ...+|.......+.+..|+ -+++.++|...
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334456666887766544 3567889999999988777 6778877777777777766 57999999999
Q ss_pred HHHHHHH
Q 011858 229 CKKTLEI 235 (476)
Q Consensus 229 ~~~al~~ 235 (476)
.+++++-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.52 E-value=13 Score=27.89 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=52.0
Q ss_pred HHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Q 011858 141 VPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM 220 (476)
Q Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 220 (476)
..++++++..+.......+....+.+|...+.. .+++..+|...... +-....+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~~p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRL------CNEPLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH------CSCHHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh------cCCHHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcC
Confidence 446666666654322222222223444444443 24566677665543 223456777888999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 011858 221 QFDKAEELCKKTLEI 235 (476)
Q Consensus 221 ~~~~A~~~~~~al~~ 235 (476)
++.+|.++|+.+++.
T Consensus 111 ~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999874
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.45 E-value=35 Score=30.74 Aligned_cols=103 Identities=8% Similarity=-0.054 Sum_probs=67.0
Q ss_pred hhHHHHHHHHhhhhccccCC----Cc---hhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHH--HHhcCCchhHHH
Q 011858 137 FEEAVPALEKAISVPDVTRG----AD---HALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQI--EALGETDPRVGE 207 (476)
Q Consensus 137 ~~~A~~~~~~al~~~~~~~~----~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~ 207 (476)
.+++...+.++...+..... .. .....+.....+-.+|++.++..-+...++..-.... ..-.-.....+.
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 45566666666665432111 11 2222334456667899999999999988855433210 000011235677
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH-HHhc
Q 011858 208 TCRYLAEAHVQAMQFDKAEELCKKTLEI-HRAH 239 (476)
Q Consensus 208 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 239 (476)
.++.+|.++...++|.+|.+.+..|+.. ++..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 8899999999999999999999999998 7654
No 293
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=79.16 E-value=18 Score=32.66 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCC--CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhc
Q 011858 331 SVFVRLADLYHRTGKLRESKSYCENALRIYARP--VPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL-LEDK 406 (476)
Q Consensus 331 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~ 406 (476)
.....+-.+|++.++..-+...++..-.. ... ...-...+.+..++.+|.++...++|.+|.+.+..|+.. ++..
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34456678899999999998888654442 210 001234467888999999999999999999999999999 7754
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=78.98 E-value=11 Score=24.60 Aligned_cols=37 Identities=14% Similarity=-0.023 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|..+++.+-....
T Consensus 15 ~A~~lv~~Ave~D~~g-~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 15 AAATVLKRAVELDSES-RYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHh
Confidence 3566788888888898 599999999999999877755
No 295
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=78.31 E-value=24 Score=28.24 Aligned_cols=178 Identities=11% Similarity=0.014 Sum_probs=97.0
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCch
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-AMQFDKAEELCKKTLEIHRAHSEPASL 245 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 245 (476)
+..++.+..+.++|++...+.+++.+.. .....+-.+.++.+|-. .|....+...+....+.....+.....
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~~-------~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~ 83 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEKG-------EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKG 83 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHH
Confidence 6778899999999999999998887651 12222333444444432 233334444443322221111222111
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----HcCCChhHHHHHHHHHHHHHH-----cCC-----HHHHHHH
Q 011858 246 EESADRRLMALICEAKGDYEAALEHLVLASMAMI-----ANGQDNEVAAIDVSIGNIYLS-----LCR-----FDEAVFS 310 (476)
Q Consensus 246 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~l~~~~~~-----~g~-----~~~A~~~ 310 (476)
....-+. ..+- .+-.......+.++. ...........+-..|..|.. .|+ .+.|...
T Consensus 84 ~~i~~yr--~kie------~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~a 155 (236)
T 3iqu_A 84 PEVREYR--EKVE------TELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSA 155 (236)
T ss_dssp SHHHHHH--HHHH------HHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHHH--HHHH------HHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1111111 1110 111222233333322 122223334444455666543 333 3678899
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHH
Q 011858 311 YQKALTVFKSSKGDNHPSVASVFVRLADLYHR-TGKLRESKSYCENALRI 359 (476)
Q Consensus 311 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~ 359 (476)
|++|.++......+.+|.......+.+..|.. +++.++|....+++++-
T Consensus 156 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 156 YQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999877777888887777777777664 68999988877776653
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.38 E-value=53 Score=33.16 Aligned_cols=89 Identities=10% Similarity=0.007 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 011858 291 DVSIGNIYLSLCRFDEAVFSYQKALTVF-----------------KSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYC 353 (476)
Q Consensus 291 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 353 (476)
-+.+|.+|...|++++|..+|++|-.-. ... +........|..+..++...+-++-++++.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4779999999999999999998764211 000 011223446778888888889999999999
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Q 011858 354 ENALRIYARPVPGTTAEEIAGGLTEISAIYES 385 (476)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (476)
+.|++.... ++.......+..+-.....
T Consensus 921 ~lAI~~~~~----dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 921 LLADASKET----DDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHTCCS----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccc----CCccchHHHHHHHHHHHhh
Confidence 988886543 2333334445444444433
No 297
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=76.86 E-value=35 Score=29.25 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEV 287 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 287 (476)
++.+|.+++..........+. .-|..+|..+++.+++.+|+..+.++-..++..+.....
T Consensus 276 ~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reD 335 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDD 335 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred HHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccH
Confidence 788999999988887766443 236778889999999999999999887777665544433
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.23 E-value=54 Score=31.09 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=76.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHH
Q 011858 294 IGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIA 373 (476)
Q Consensus 294 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 373 (476)
++.......+.+.|...+....... . -+..........++.-....+...++...+.+..... ......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 288 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ-Q---LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-------QSTSLI 288 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT-T---CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-------CCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc-C---CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-------CChHHH
Confidence 3444445568888888887755421 1 1122223344444444444554567777777654321 112222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
. ...+ .....|+++.|..+|...-. .........+.+|..+...|+.++|..+|+++..
T Consensus 289 e--~~~r-~Alr~~d~~~a~~~~~~l~~-------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 E--RRVR-MALGTGDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H--HHHH-HHHHHTCHHHHHHHHHHSCT-------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H--HHHH-HHHHCCCHHHHHHHHHHccc-------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 2223 34467999999998865432 1112346778899999999999999999998864
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.85 E-value=12 Score=27.68 Aligned_cols=81 Identities=6% Similarity=0.070 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHH---HcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcC
Q 011858 268 LEHLVLASMAMI---ANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTG 344 (476)
Q Consensus 268 ~~~~~~a~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 344 (476)
..++++++..+. ...+++....++...+... +++.+.|.-.... +-....+..|...|..+...|
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH------GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT------TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcC
Confidence 345555555553 3345666666666666542 2355666554432 224456788889999999999
Q ss_pred ChhHHHHHHHHHHHHH
Q 011858 345 KLRESKSYCENALRIY 360 (476)
Q Consensus 345 ~~~~A~~~~~~a~~~~ 360 (476)
++.+|.+.|+.+++..
T Consensus 116 ~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 116 ELQHASAVLQRGIQNQ 131 (152)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999999863
No 300
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.43 E-value=12 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|.++++.+.....
T Consensus 18 ~Ai~lv~~Ave~D~~g-~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 18 MARKYAINAVKADKEG-NAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH
Confidence 4666788888888898 599999999999999877654
No 301
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.90 E-value=14 Score=23.89 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|.++++.+.....
T Consensus 10 ~Ai~lv~~Ave~D~~g-~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 10 MARKYAILAVKADKEG-KVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888898 599999999999999877654
No 302
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.44 E-value=30 Score=26.91 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHH---cCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCC
Q 011858 269 EHLVLASMAMIA---NGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGK 345 (476)
Q Consensus 269 ~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 345 (476)
..+++++..+.. ..+++....+|...+..+ ..+...++...|.-.... +-....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK------GIGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH------TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCC
Confidence 577777776653 345677777777777765 234466888888776654 2245668889999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 011858 346 LRESKSYCENALRIY 360 (476)
Q Consensus 346 ~~~A~~~~~~a~~~~ 360 (476)
+.+|.+.|+.+++..
T Consensus 131 ~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 131 FLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999864
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.03 E-value=7.5 Score=28.99 Aligned_cols=74 Identities=4% Similarity=-0.145 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 210 RYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADR-RLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 210 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
+..+..++..|+|-+|-+.++..-.......+........+. ...|..+...|+..-|...+.+++..+.....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~ 110 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN 110 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 445667777899999999888876543221111223445555 66677788899999999999999887765543
No 304
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.83 E-value=10 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 421 GVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
|.-.-..|++++|+.+|.++++.+...
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 444566789999999999999887654
No 305
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=72.52 E-value=50 Score=28.98 Aligned_cols=64 Identities=11% Similarity=-0.019 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAID 291 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 291 (476)
++.+|.+++..........+. .-|..+|..+++.+++.+|+..+..+-..++..+.......+|
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIY 361 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIY 361 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHH
Confidence 788899999888887766443 2377789999999999999999999887777665544444333
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.28 E-value=6 Score=25.19 Aligned_cols=31 Identities=10% Similarity=0.410 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 417 EARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 417 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
...+|+=|...|+|+.|+.+|+.+++.....
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999877665
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.53 E-value=22 Score=35.86 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-----------------HHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMA-----------------MIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQK 313 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 313 (476)
-+.+|.+|...|++++|..+|++|-.- .............|..+..++...+-++-++.+.+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 477899999999999999999876311 111112223344667777788888888888888888
Q ss_pred HHHHH
Q 011858 314 ALTVF 318 (476)
Q Consensus 314 al~~~ 318 (476)
|++..
T Consensus 923 AI~~~ 927 (950)
T 4gq2_M 923 ADASK 927 (950)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 87753
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.02 E-value=8.9 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 421 GVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 421 ~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
|.-.-..|+|++|+.+|.++++.+...
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334456789999999999999877654
No 309
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=70.36 E-value=19 Score=23.27 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhhhccCCChhHHHHH-HHHHHHH
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAAAEAEPSLDYAMSL-HVLAAIY 131 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 131 (476)
..+..++..|..++..| +|.+|+.+|+++..+ ...++.-.+. +.++.|-
T Consensus 51 ~~~r~~i~eak~~y~~~-ny~ea~~l~~k~~n~---------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETA-NYGEALVFFEKALNL---------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc-chhHHHHHHHHHHcc---------ccCHHHHHHHHHHHHHHH
Confidence 35678888999999999 799999999998865 3556655555 5555543
No 310
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=69.43 E-value=6.6 Score=26.20 Aligned_cols=68 Identities=12% Similarity=-0.069 Sum_probs=46.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 379 ISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
.|..++..|+|=+|-+.++..-...+.. ........+....|......|+. |...+.+++..+.....
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~-~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~ 74 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGE-ERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC 74 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence 4556677799999999999887665221 11122333444556666678888 99999999998877654
No 311
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=69.40 E-value=35 Score=27.87 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCC----------hhHHHHHHHHhhhhccccC--CCchhHHHHHhHhhHHHHHH-HcCChhhHHHHH
Q 011858 121 AMSLHVLAAIYCSLGK----------FEEAVPALEKAISVPDVTR--GADHALAKFSGYMQLGDTCS-MLGQVDRSIGCY 187 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 187 (476)
.-.+-..|..|...-. .+.|...|++|.++..... .+.+|... ....+.+..|+ ..++.++|....
T Consensus 142 VFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRL-GLaLNfSVFyYEIln~p~~Ac~lA 220 (268)
T 3efz_A 142 AFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYL-ATILNYTILKYDLLGNPEGAMKFA 220 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHH-HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344556777765433 3678889999998886555 56676543 33445555554 579999999999
Q ss_pred HHHHHH
Q 011858 188 EEGLKI 193 (476)
Q Consensus 188 ~~al~~ 193 (476)
+++++-
T Consensus 221 k~AFde 226 (268)
T 3efz_A 221 NRAIQA 226 (268)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998876
No 312
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=68.94 E-value=22 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
+.+..+...|...-..| ++++|+.+|..|++++.....
T Consensus 16 ~kAi~lv~~Ave~D~ag-~y~eAl~lY~~Aie~l~~alk 53 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAG-NYEEALQLYQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888 599999999999999887754
No 313
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=68.08 E-value=24 Score=26.34 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLT---EISAIYESVDEPEEALKLLQRAMKLLEDKP 407 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 407 (476)
+.-+..++..|+|=+|-+.++........ ..+.......+. ..|..+...|+...|...+.+++.......
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~---~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGR---GNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCS---SSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 44566677789999999999988765432 101223333333 345566778999999999999999887664
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=67.54 E-value=24 Score=23.39 Aligned_cols=37 Identities=16% Similarity=-0.026 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 74 LGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 74 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
.+..+...|...-..| ++++|+.+|..+++.+.....
T Consensus 14 ~Ai~lv~~Ave~D~~g-~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 14 AAVAVLKRAVELDAES-RYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888998 599999999999999887755
No 315
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=67.48 E-value=22 Score=23.00 Aligned_cols=38 Identities=13% Similarity=-0.067 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHhh
Q 011858 73 DLGPFLLKLARDTIASGEGPSKALDYAIRASKSFERCAA 111 (476)
Q Consensus 73 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 111 (476)
+.+..+...|...-..| ++++|+.+|..+++.+.....
T Consensus 11 ~~A~~l~~~Av~~D~~g-~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTAT-QYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888 599999999999998877654
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=66.74 E-value=67 Score=28.23 Aligned_cols=60 Identities=10% Similarity=-0.033 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChh
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNE 286 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 286 (476)
.++.+|++++...+......+ ..-|..+|-.+.+.+++.+|+..+.++-..+........
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 467888999888887766543 233677788899999999999999888776665544333
No 317
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.34 E-value=1e+02 Score=29.18 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=91.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 011858 254 MALICEAKGDYEAALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF 333 (476)
Q Consensus 254 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 333 (476)
++.......+.+.|...+....... .-...........++.-+...+...++...+.+.... ..+... .-
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~e 289 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSL--IE 289 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHH--HH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc--CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHH--HH
Confidence 3444445557888888776543211 1122233334444554445555355666677664322 112222 22
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------HHhc
Q 011858 334 VRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL-------LEDK 406 (476)
Q Consensus 334 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~ 406 (476)
. ++......|+++.|..+|+..-. .........+.+|..+...|+.++|..+|+++... ....
T Consensus 290 ~-~~r~Alr~~d~~~a~~~~~~l~~---------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~ 359 (618)
T 1qsa_A 290 R-RVRMALGTGDRRGLNTWLARLPM---------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR 359 (618)
T ss_dssp H-HHHHHHHHTCHHHHHHHHHHSCT---------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred H-HHHHHHHCCCHHHHHHHHHHccc---------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 2 22334467999999888865432 12234667888899999999999999988886541 0000
Q ss_pred cCCC------------ch--HHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 011858 407 PGQQ------------ST--IAGIEARMGVMFYMVGRYEEARSSFESAI 441 (476)
Q Consensus 407 ~~~~------------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 441 (476)
.|.. .. ...-....+..+...|....|...+...+
T Consensus 360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~ 408 (618)
T 1qsa_A 360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV 408 (618)
T ss_dssp TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 0100 00 11122345666777888888877666544
No 318
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=62.25 E-value=17 Score=24.17 Aligned_cols=68 Identities=15% Similarity=-0.036 Sum_probs=42.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 011858 212 LAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMAMIANGQ 283 (476)
Q Consensus 212 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 283 (476)
.|..++..|+|-+|-+.++..-...+. .........+....|..+...|+. |...+.+++..+...+.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~ 74 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPC 74 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCC
Confidence 455666778888888888777654411 111223444455556666677777 88888888776655443
No 319
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=60.27 E-value=45 Score=26.10 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCH
Q 011858 328 SVASVFVRLADLYHRTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEP 389 (476)
Q Consensus 328 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 389 (476)
......+.+|.++...++|.+|.+.+.+|+..+.+. .......++..+.-+-.-+|+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~----~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS----SQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh----HHHHHHHHHHHHHHHHHHcCCC
Confidence 346678899999999999999999999999987653 2233344444454444455654
No 320
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=58.92 E-value=47 Score=24.06 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 297 IYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 297 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
.+..+|+-++-.+.+...+. +.+..+..+..+|.+|.+.|+..+|.+++.+|.+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34566776665554444322 24555788999999999999999999999998764
No 321
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.78 E-value=12 Score=23.39 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 332 VFVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 332 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
--..+|+.+...|++++|..+|-+|+..+.+
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3456899999999999999999999998754
No 322
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=58.57 E-value=94 Score=27.18 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 413 IAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.+.+++..|..+...+++.+|+.+++.|.+.+.+.
T Consensus 252 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 286 (376)
T 3r9m_A 252 TAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKA 286 (376)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 34566677777788888988888888888776644
No 323
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=58.27 E-value=36 Score=26.62 Aligned_cols=62 Identities=13% Similarity=-0.044 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhh
Q 011858 117 SLDYAMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDR 182 (476)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 182 (476)
..+.+...+.+|.++...++|.+|.+.+..|+..++... ......++..+--+-..+|++..
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~----~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS----QKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH----HHHHHHHHHHHHHHHHHcCCCCC
Confidence 456777899999999999999999999999999876321 11112334555555566787654
No 324
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=57.92 E-value=83 Score=26.34 Aligned_cols=157 Identities=6% Similarity=-0.043 Sum_probs=93.6
Q ss_pred HHHHhHhhHHHHHHHcCC---hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHH
Q 011858 162 AKFSGYMQLGDTCSMLGQ---VDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAMQFD--KAEELCKKTLEIH 236 (476)
Q Consensus 162 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~ 236 (476)
..+..+..-|.+....|- -+-|-++|.+|+.++++...+ ......++..+...+.....+. .-..+..++-...
T Consensus 97 lalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Isd-Sk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~a 175 (298)
T 2r17_C 97 LPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISD-SKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAA 175 (298)
T ss_dssp HHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHH
Confidence 334556666666666655 567788999999999885433 3344455555555555554432 2222223333333
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHcCCChhHHHHHH---HHHHHHHHcCC
Q 011858 237 RAHSEPASLEESADRRLMALICEA----------KGDYEAALEHLVLASMAMIANGQDNEVAAIDV---SIGNIYLSLCR 303 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~ 303 (476)
.+... .+....+...-+.+++. ..+-+..+++++++++++...-+.......+. +.-..|+..|+
T Consensus 176 skLLK--K~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~ylyff~~g~ 253 (298)
T 2r17_C 176 SKLLK--KPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKEN 253 (298)
T ss_dssp HTCSS--HHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccC--cHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhhhCCC
Confidence 33322 24566667777777774 24788999999999999887755443333332 33344566666
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 011858 304 FDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 304 ~~~A~~~~~~al~~~~~~ 321 (476)
..-..++++..+++.++.
T Consensus 254 ~~Vt~~~in~LI~lI~~~ 271 (298)
T 2r17_C 254 DAVTIQVLNQLIQKIRED 271 (298)
T ss_dssp TTSCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 555566677777776654
No 325
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=56.88 E-value=87 Score=26.24 Aligned_cols=156 Identities=8% Similarity=0.071 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHcCChh--HHHHHHHHHHHHHc
Q 011858 287 VAAIDVSIGNIYLSLCR---FDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLR--ESKSYCENALRIYA 361 (476)
Q Consensus 287 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~ 361 (476)
....+..-|.+.-..|- -+-|-+++.+|+.++++... +......+...+...+.+...+. .-..+..++.....
T Consensus 98 alrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Is-dSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~as 176 (298)
T 2r17_C 98 PLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIS-DSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAAS 176 (298)
T ss_dssp HHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHH
Confidence 33444444444444554 56788899999999988532 23344556666666665665543 22222333333334
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhccCCCchHHHH---HHHHHHHHHHhh
Q 011858 362 RPVPGTTAEEIAGGLTEISAIYES----------VDEPEEALKLLQRAMKLLEDKPGQQSTIAGI---EARMGVMFYMVG 428 (476)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g 428 (476)
+.. ..++...+.+.-+.++.. ..+-+..++++++++++..... +....... ..+.-..|+..|
T Consensus 177 kLL---KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~-d~~~~v~LfveILn~ylyff~~g 252 (298)
T 2r17_C 177 KLL---KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM-DPSLQVQLFIEILNRYIYFYEKE 252 (298)
T ss_dssp TCS---SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcc---CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHHhhhhCC
Confidence 432 445667777777777764 2577899999999999998873 22211111 123344566677
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 011858 429 RYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 429 ~~~~A~~~~~~a~~~~~~~ 447 (476)
+..=..++.+..+++.++.
T Consensus 253 ~~~Vt~~~in~LI~lI~~~ 271 (298)
T 2r17_C 253 NDAVTIQVLNQLIQKIRED 271 (298)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 7555667777777777653
No 326
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.47 E-value=19 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Q 011858 333 FVRLADLYHRTGKLRESKSYCENALRIYAR 362 (476)
Q Consensus 333 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 362 (476)
-..+|..+...|+++.|+.+|-+|+.++.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999999998754
No 327
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=55.16 E-value=40 Score=21.79 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 011858 374 GGLTEISAIYESVDEPEEALKLLQRAMKLLED 405 (476)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 405 (476)
..+...|.-.-..|++++|+.+|..+++.+-.
T Consensus 14 ~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 14 IELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33444455556789999999999999987654
No 328
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.66 E-value=17 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhhcc
Q 011858 124 LHVLAAIYCSLGKFEEAVPALEKAISVPD 152 (476)
Q Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 152 (476)
-..+|..+...|++++|..+|-+|+..++
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999875
No 329
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.55 E-value=20 Score=23.79 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 377 TEISAIYESVDEPEEALKLLQRAMKLLEDK 406 (476)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 406 (476)
..+|..+...|+++.|+.+|-+|+.++++-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 457888999999999999999999887654
No 330
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=50.83 E-value=29 Score=31.43 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 224 KAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 224 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
..+.-++.|+...+............++..++++|...|++++|.++.++++..
T Consensus 166 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 166 FIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 334444444444433223334455667788899999999999999999888754
No 331
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.76 E-value=1.7e+02 Score=27.91 Aligned_cols=28 Identities=25% Similarity=0.106 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 011858 372 IAGGLTEISAIY--ESVDEPEEALKLLQRA 399 (476)
Q Consensus 372 ~~~~~~~la~~~--~~~g~~~~A~~~~~~a 399 (476)
....+..+..++ ...|+++.|++.+++.
T Consensus 535 t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 535 ICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 345556666665 7799999999988863
No 332
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=50.69 E-value=1.4e+02 Score=26.93 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Q 011858 181 DRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQAM 220 (476)
Q Consensus 181 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 220 (476)
++|+++|+++++..++....+++.....+..++..|...|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aG 488 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhcc
Confidence 4577777777777777765667666666666665544333
No 333
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=49.44 E-value=98 Score=24.63 Aligned_cols=178 Identities=9% Similarity=-0.036 Sum_probs=95.7
Q ss_pred hHHHHHHHcCChhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCchHH
Q 011858 169 QLGDTCSMLGQVDRSIGCYEEGLKIQIEALGETDPRVGETCRYLAEAHVQ-AMQFDKAEELCKKTLEIHRAHSEPASLEE 247 (476)
Q Consensus 169 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 247 (476)
.++.+....++|++...+.+++.+..... + ......-.+.++.+|-. .|....+.+.+... -.+..+. ..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~--~eLt~EERnLLSvAYKNvig~rR~swRiissi---Eqkek~~--~~- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-N--SEFDDEERHLLTLCIKHKISDYRTMTSQVLQE---QTKQLNN--DE- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-T--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHSCSC--HH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-C--CCCCHHHHHHHHHHHHHhhcccHHHHHHHHHH---HHHHcCC--HH-
Confidence 67888999999999999999988721111 1 11122223333333321 12222222222221 1111111 00
Q ss_pred HHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHH
Q 011858 248 SADRRLMALICEAKGDYE-AALEHLVLASMAMIANGQD--NEVAAIDVSIGNIYL-----SLCRFDEAVFSYQKALTVFK 319 (476)
Q Consensus 248 ~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~ 319 (476)
...+..-|. .+.+ +-.......+.+....-.+ ......+-..|..|. ..|+.+.|...|+.|.+++.
T Consensus 82 ---~~~~i~~yr--~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~ 156 (227)
T 2o8p_A 82 ---LVKICSEYV--FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC 156 (227)
T ss_dssp ---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH--HHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 111111111 1121 2223344444444432221 223333444555544 35678999999999999998
Q ss_pred hcCCCCCchHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHH
Q 011858 320 SSKGDNHPSVASVFVRLADLYH-RTGKLRESKSYCENALRIY 360 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 360 (476)
....+.+|.......+.+..|. -+++.++|....++++.+.
T Consensus 157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 7665667766666666666655 5789999999999997763
No 334
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=48.80 E-value=33 Score=31.12 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 011858 225 AEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLASMA 277 (476)
Q Consensus 225 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 277 (476)
.+.-++.|+...+............++..+|++|...|++++|.++.++++..
T Consensus 173 I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 173 IISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33344444444433223334456667888899999999999999999888764
No 335
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.80 E-value=68 Score=22.35 Aligned_cols=32 Identities=6% Similarity=0.197 Sum_probs=24.7
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
+...|.-.-..|+|++|+.+|..+++++...+
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 34445555677999999999999999877654
No 336
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=45.79 E-value=1e+02 Score=27.81 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=5.2
Q ss_pred hhHHHHHHHHh
Q 011858 137 FEEAVPALEKA 147 (476)
Q Consensus 137 ~~~A~~~~~~a 147 (476)
|++|+.+++++
T Consensus 455 Y~~Ai~~L~k~ 465 (526)
T 2wb7_A 455 YKAAINDLQKA 465 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34455555444
No 337
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=45.79 E-value=44 Score=30.20 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
......++..++++|+..|++++|..+.++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4566778899999999999999999999999875
No 338
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=45.48 E-value=1.5e+02 Score=25.71 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHhHhhHHHHHHHcC---------ChhhHHHHHHHHHHHHH
Q 011858 164 FSGYMQLGDTCSMLG---------QVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~ 195 (476)
+.+++++|.++...| ....|..+|++|--++.
T Consensus 117 a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~ 157 (363)
T 3rau_A 117 ACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFA 157 (363)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 466888888886654 24567777777766554
No 339
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=45.24 E-value=1.6e+02 Score=25.90 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhccCC-----C------------chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcc
Q 011858 391 EALKLLQRAMKLLEDKPGQ-----Q------------STIAGIEARMGVMFYMVGRYEEARSSFESAIAKLRASGE 449 (476)
Q Consensus 391 ~A~~~~~~a~~~~~~~~~~-----~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 449 (476)
++.++|+++.+........ . ...+.+++..|......+++-+|+.+++.|.+.+.+...
T Consensus 217 ~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~ 292 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSLP 292 (392)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 4556788888877765311 0 123345556677777788999999999999988777643
No 340
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=43.63 E-value=48 Score=30.02 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
......++..+|++|+..|++++|..+.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5566788899999999999999999999999875
No 341
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.08 E-value=69 Score=20.77 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHH-HHHHHHH
Q 011858 288 AAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVF-VRLADLY 340 (476)
Q Consensus 288 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 340 (476)
+.....-|.-++..++|.+|...|+++... .+++..-.++ +.++.|-
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 455666777888999999999999999877 4456555554 5555553
No 342
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=41.41 E-value=71 Score=20.73 Aligned_cols=32 Identities=16% Similarity=0.416 Sum_probs=26.0
Q ss_pred HhhHHHHHHHcCChhhHHHHHHHHHHHHHHHh
Q 011858 167 YMQLGDTCSMLGQVDRSIGCYEEGLKIQIEAL 198 (476)
Q Consensus 167 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 198 (476)
+...|.-.-..|+|++|+.+|..+++.+....
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 55666666788999999999999999876654
No 343
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=40.84 E-value=1.8e+02 Score=25.25 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 011858 413 IAGIEARMGVMFYMVGRYEEARSSFESAIAKLRAS 447 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 447 (476)
.+.+++..|......+++-+|+.+++.|.+.+.+.
T Consensus 251 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 285 (363)
T 3rau_A 251 AAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEA 285 (363)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888999999888888776654
No 344
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=40.54 E-value=2e+02 Score=25.68 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 206 GETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 206 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
...+..|+..+...|+|.+|..++..+..
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567799999999999999888864443
No 345
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=39.44 E-value=37 Score=30.99 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 244 SLEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 244 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
......++..++++|...|++++|.++.++++.
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345566788889999999999999999888765
No 346
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=39.43 E-value=2.1e+02 Score=25.62 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 011858 376 LTEISAIYESVDEPEEALKLLQRAMKLLEDKPGQQSTIAGIEARMGVM 423 (476)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (476)
+......+.+-+.|+.|+..++..+........+...++.++..++.+
T Consensus 95 ~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~ 142 (436)
T 2yin_A 95 YETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKF 142 (436)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666777777777777777666422333333333333333
No 347
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=37.18 E-value=0.0005 Score=60.92 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhhccccCCCchhHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHHHHHHhcC
Q 011858 121 AMSLHVLAAIYCSLGKFEEAVPALEKAISVPDVTRGADHALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKIQIEALGE 200 (476)
Q Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 200 (476)
..+|..+|.++...+...+|++.|-++-+-. .+.....+....|+|++=+.+++.+.+..+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps--------------~y~eVi~~A~~~~~~edLv~yL~MaRk~~k----- 114 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKADDPS--------------SYMEVVQAANTSGNWEELVKYLQMARKKAR----- 114 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCSCCC--------------SSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-----
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCCChH--------------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-----
Confidence 4478899999999999999988776543221 155566666788889888888877654321
Q ss_pred CchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------
Q 011858 201 TDPRVGETCRYLAEAHVQAMQFDKAEELCKKTLEIHRAHSEPASLEESADRRLMALICEAKGDYEAALEHLVLA------ 274 (476)
Q Consensus 201 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------ 274 (476)
.+ .+-..|..+|.+.++..+-.+++.. .+..+ ....|.-++..|.|+.|.-+|...
T Consensus 115 -e~---~IDteLi~ayAk~~rL~elEefl~~-------~N~A~-------iq~VGDrcf~e~lYeAAKilys~isN~akL 176 (624)
T 3lvg_A 115 -ES---YVETELIFALAKTNRLAELEEFING-------PNNAH-------IQQVGDRCYDEKMYDAAKLLYNNVSNFGRL 176 (624)
T ss_dssp -ST---TTTHHHHHHHHTSCSSSTTTSTTSC-------CSSSC-------THHHHHHHHHSCCSTTSSTTGGGSCCCTTT
T ss_pred -cc---ccHHHHHHHHHhhCcHHHHHHHHcC-------CCccc-------HHHHHHHHHHccCHHHHHHHHHhCccHHHH
Confidence 11 1223445555566654432221110 00000 233455555555555554433211
Q ss_pred -------------HHHHHHcCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Q 011858 275 -------------SMAMIANGQDNEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYH 341 (476)
Q Consensus 275 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 341 (476)
++.+++.++ ..+|-.....+...+++.-|..+--..+-. ++ -+..+...|.
T Consensus 177 AstLV~L~~yq~AVdaArKAns----~ktWKeV~~ACvd~~EfrLAqicGLniIvh---------ad---eL~elv~~YE 240 (624)
T 3lvg_A 177 ASTLVHLGEYQAAVDGARKANS----TRTWKEVCFACVDGKEFRLAQMCGLHIVVH---------AD---ELEELINYYQ 240 (624)
T ss_dssp SSSSSSCSGGGSSTTTTTTCCS----SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---------SS---CCSGGGSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHhCchHHHHHHHhcchhccc---------HH---HHHHHHHHHH
Confidence 000000011 112222333344444444433332222111 00 0112344566
Q ss_pred HcCChhHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHhccCCCch
Q 011858 342 RTGKLRESKSYCENALRIYARPVPGTTAEEIAGGLTEISAIYESVDEPEEALKLLQR---------AMKLLEDKPGQQST 412 (476)
Q Consensus 342 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------a~~~~~~~~~~~~~ 412 (476)
..|-+++-+.+++.++.+-+. ....+..||.+|.+- +.++-.++++. .++.+.+
T Consensus 241 ~~G~f~ELIsLlEaglglErA---------HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~------- 303 (624)
T 3lvg_A 241 DRGYFEELITMLEAALGLERA---------HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQ------- 303 (624)
T ss_dssp TTCCCTTSTTTHHHHTTSTTC---------CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTT-------
T ss_pred hCCCHHHHHHHHHHHhCCCch---------hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHH-------
Confidence 788888888888888865333 266778888877653 55666665543 1222221
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHH
Q 011858 413 IAGIEARMGVMFYMVGRYEEARS 435 (476)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~A~~ 435 (476)
+..|..+.-+|..-.+++.|..
T Consensus 304 -ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 304 -AHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -TTCHHHHHHHHHHHTCHHHHHH
T ss_pred -HhhHHHHHHHHhcchhHHHHHH
Confidence 2356667777888888887653
No 348
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=36.37 E-value=2.3e+02 Score=25.25 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=25.8
Q ss_pred hHHHHHhHhhHHHHHHHcCChhhHHHHHHHHHHH
Q 011858 160 ALAKFSGYMQLGDTCSMLGQVDRSIGCYEEGLKI 193 (476)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 193 (476)
+...+..+..|+..+...|+|.+|--++..+..+
T Consensus 7 pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 7 PELRKTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344456789999999999999999888755543
No 349
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=35.83 E-value=84 Score=28.79 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.....++..+|++|+-.|++++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445567788999999999999999999999864
No 350
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=34.53 E-value=56 Score=29.77 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
......++..+|++|+..|++++|..+.++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4566778899999999999999999999999875
No 351
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=33.96 E-value=2.4e+02 Score=24.74 Aligned_cols=37 Identities=16% Similarity=-0.065 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 011858 285 NEVAAIDVSIGNIYLSLCRFDEAVFSYQKALTVFKSS 321 (476)
Q Consensus 285 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 321 (476)
...+.+++..|......+++-+|+.+++.+.+...+.
T Consensus 254 ~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 254 FYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 3446677778888888999999999999888877775
No 352
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.24 E-value=96 Score=28.07 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALRI 359 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 359 (476)
......++..+|++|+.++++++|..+.++++..
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4556788999999999999999999999998853
No 353
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.14 E-value=1.1e+02 Score=27.81 Aligned_cols=34 Identities=9% Similarity=-0.087 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011858 369 AEEIAGGLTEISAIYESVDEPEEALKLLQRAMKL 402 (476)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 402 (476)
......++..+|++|+..|++++|..+.++++..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3345668888999999999999999999999875
No 354
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=31.76 E-value=2.6e+02 Score=24.39 Aligned_cols=32 Identities=6% Similarity=-0.127 Sum_probs=20.5
Q ss_pred HHhHhhHHHHHHHcC------------ChhhHHHHHHHHHHHHH
Q 011858 164 FSGYMQLGDTCSMLG------------QVDRSIGCYEEGLKIQI 195 (476)
Q Consensus 164 ~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~ 195 (476)
+.+++++|.++...+ ....|..+|++|-.++.
T Consensus 114 a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 114 ISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 456788887776543 24567777777765543
No 355
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=31.10 E-value=91 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.083 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.....++..++++|...+++++|..+.++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44566788889999999999999999988764
No 356
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=30.18 E-value=1e+02 Score=28.24 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.....++..+|++|...+++++|..+.++++.
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45566788899999999999999999998865
No 357
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.14 E-value=1.6e+02 Score=21.43 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011858 202 DPRVGETCRYLAEAHVQAMQFDKAEELCKKTLE 234 (476)
Q Consensus 202 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 234 (476)
.+..+..+..+|.+|.+.|+..+|.+++.+|-+
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 334467889999999999999999999998865
No 358
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.57 E-value=2.6e+02 Score=23.69 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Q 011858 75 GPFLLKLARDTIASGEGPSKALDYAIRASKSF 106 (476)
Q Consensus 75 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~ 106 (476)
....+..|..+...|+ +++|+..|+..+...
T Consensus 102 l~~~Lk~gyk~~t~gK-f~eAl~~Fr~iL~~i 132 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGK-FEEAVEKFRSILLSV 132 (320)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHh
Confidence 3346788999999996 999999999988865
No 359
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=28.11 E-value=3.3e+02 Score=24.40 Aligned_cols=49 Identities=6% Similarity=-0.092 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHH
Q 011858 251 RRLMALICEAKGDYEAALEHLVLASMAMIAN-GQDNEVAAIDVSIGNIYL 299 (476)
Q Consensus 251 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~ 299 (476)
+......+.+-+.|+.|+.+++..+..++.. -+-...+.++..++.+|.
T Consensus 95 ~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~ 144 (436)
T 2yin_A 95 YETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE 144 (436)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677888888888777777664 555566666666666665
No 360
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.77 E-value=1.3e+02 Score=27.34 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 011858 410 QSTIAGIEARMGVMFYMVGRYEEARSSFESAIAK 443 (476)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 443 (476)
.....-++..+|++|+-.|++++|..+.++++..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4445667888999999999999999999999864
No 361
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=27.38 E-value=61 Score=29.55 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLAS 275 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 275 (476)
.....++..++.+|...+++++|....++.+
T Consensus 177 ~tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 177 PTQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455677889999999999999999888765
No 362
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.61 E-value=1.5e+02 Score=21.69 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 011858 415 GIEARMGVMFYMVGRYEEARSSFESAIAKLRA 446 (476)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 446 (476)
..+...|.+|...|+.+.|.-+|-+...++-+
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e 72 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIE 72 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44556799999999999999999999988853
No 363
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=23.73 E-value=1.4e+02 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 011858 245 LEESADRRLMALICEAKGDYEAALEHLVLASM 276 (476)
Q Consensus 245 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 276 (476)
.....++..++.+|...+++++|....++++.
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999999999998764
No 364
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=22.57 E-value=1.7e+02 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.....++..++++|+-.+++++|..+.+++++
T Consensus 179 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 179 ATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778899999999999999999999885
No 365
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=20.91 E-value=1.1e+02 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011858 326 HPSVASVFVRLADLYHRTGKLRESKSYCENALR 358 (476)
Q Consensus 326 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 358 (476)
......++..++++|+..+++++|....++++.
T Consensus 176 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 176 KPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred cccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 445567888999999999999999999988874
No 366
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=20.74 E-value=2.2e+02 Score=19.88 Aligned_cols=31 Identities=13% Similarity=-0.046 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 011858 415 GIEARMGVMFYMVGRYEEARSSFESAIAKLR 445 (476)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 445 (476)
+.+..-+.-..+.|+|++|.+.++++-+.+.
T Consensus 38 RS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 68 (120)
T 3l8r_A 38 RSIVHEAFDAMREKNYILAEQKLQEANDELL 68 (120)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3334445555667888888888777755443
No 367
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.27 E-value=2.2e+02 Score=19.53 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 011858 418 ARMGVMFYMVGRYEEARSSFESAIAKL 444 (476)
Q Consensus 418 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 444 (476)
..-+.-..+.|+|++|.+.++++-+.+
T Consensus 26 ~~eAl~~Ak~gdfe~A~~~l~eA~~~l 52 (109)
T 3k1s_A 26 AMEALQFAKQGKMAEADEAMVKAKEAI 52 (109)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444556677777777777775543
No 368
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=20.26 E-value=2.4e+02 Score=26.09 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 011858 411 STIAGIEARMGVMFYMVGRYEEARSSFESAIA 442 (476)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 442 (476)
.....++..+|++|+-.+++++|..+.+++++
T Consensus 195 ~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 195 ACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34456777899999999999999999999886
No 369
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=20.20 E-value=2.2e+02 Score=20.76 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 011858 373 AGGLTEISAIYESVDEPEEALKLLQRAMKLLE 404 (476)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 404 (476)
+..+...|.+|...|+.+.|.-.|-+...+.-
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45566779999999999999999999888775
Done!