Query 011859
Match_columns 476
No_of_seqs 87 out of 89
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2412 Nuclear-export-signal 100.0 6E-69 1.3E-73 558.9 27.6 428 4-471 3-446 (591)
2 PF07817 GLE1: GLE1-like prote 99.9 1.2E-26 2.6E-31 224.3 8.2 108 365-472 22-146 (256)
3 PTZ00121 MAEBL; Provisional 96.6 0.037 8E-07 66.1 14.5 22 183-204 1113-1134(2084)
4 PTZ00266 NIMA-related protein 96.4 0.064 1.4E-06 62.6 14.9 10 25-34 227-236 (1021)
5 KOG2412 Nuclear-export-signal 96.3 0.028 6.1E-07 61.5 11.1 38 217-257 220-258 (591)
6 KOG1029 Endocytic adaptor prot 94.7 0.24 5.3E-06 56.6 10.9 9 99-107 198-206 (1118)
7 KOG0163 Myosin class VI heavy 94.6 1.1 2.4E-05 51.6 15.8 55 235-289 937-992 (1259)
8 KOG1144 Translation initiation 94.4 0.18 3.8E-06 57.7 9.1 62 205-273 213-274 (1064)
9 KOG1029 Endocytic adaptor prot 93.1 8.6 0.00019 44.8 19.2 11 415-425 543-553 (1118)
10 TIGR02794 tolA_full TolA prote 93.0 2.5 5.5E-05 44.1 14.2 20 446-465 309-328 (346)
11 PTZ00266 NIMA-related protein 92.7 1 2.3E-05 52.9 12.1 39 238-276 473-511 (1021)
12 COG3064 TolA Membrane protein 91.6 1.1 2.4E-05 47.1 9.4 28 260-287 145-174 (387)
13 KOG0163 Myosin class VI heavy 90.0 34 0.00073 40.3 19.5 14 18-31 700-714 (1259)
14 PF05262 Borrelia_P83: Borreli 88.4 13 0.00029 40.9 14.8 12 68-79 49-60 (489)
15 KOG2140 Uncharacterized conser 85.8 1.8 3.8E-05 48.4 6.5 81 365-457 157-240 (739)
16 KOG4364 Chromatin assembly fac 85.3 18 0.00039 41.6 13.9 13 190-202 274-286 (811)
17 KOG3054 Uncharacterized conser 81.5 11 0.00023 38.8 9.5 13 412-424 262-274 (299)
18 KOG2002 TPR-containing nuclear 81.2 54 0.0012 39.2 16.0 15 148-162 773-787 (1018)
19 PF02854 MIF4G: MIF4G domain; 79.5 3.2 7E-05 36.9 4.7 80 374-459 2-82 (209)
20 PLN03086 PRLI-interacting fact 74.3 17 0.00038 40.7 9.4 25 444-468 198-222 (567)
21 PF09726 Macoilin: Transmembra 72.2 1.9E+02 0.0042 33.4 18.6 40 362-401 617-659 (697)
22 KOG3054 Uncharacterized conser 71.1 33 0.00072 35.4 9.7 15 222-238 129-143 (299)
23 PF15236 CCDC66: Coiled-coil d 70.3 1E+02 0.0023 29.5 14.2 36 217-254 63-99 (157)
24 KOG0612 Rho-associated, coiled 67.5 1.5E+02 0.0033 36.5 15.3 89 67-176 352-455 (1317)
25 PRK00247 putative inner membra 67.2 1.1E+02 0.0024 33.4 13.2 12 99-110 194-205 (429)
26 smart00543 MIF4G Middle domain 67.0 22 0.00048 31.8 6.9 79 374-459 2-80 (200)
27 KOG2002 TPR-containing nuclear 66.3 1.8E+02 0.0038 35.1 15.3 47 160-211 752-798 (1018)
28 KOG1144 Translation initiation 64.0 66 0.0014 38.0 11.2 29 197-229 216-244 (1064)
29 KOG2072 Translation initiation 60.1 3.7E+02 0.0081 32.3 17.8 22 24-45 399-420 (988)
30 PF09726 Macoilin: Transmembra 56.8 3.7E+02 0.008 31.2 18.4 51 172-227 417-468 (697)
31 PF15346 ARGLU: Arginine and g 54.7 2E+02 0.0043 27.5 13.8 6 233-238 65-70 (149)
32 KOG2072 Translation initiation 52.7 4.9E+02 0.011 31.4 19.2 25 172-196 702-726 (988)
33 PF05262 Borrelia_P83: Borreli 51.5 2.6E+02 0.0056 31.2 12.9 35 99-133 62-98 (489)
34 KOG2891 Surface glycoprotein [ 50.2 1.1E+02 0.0024 32.4 9.3 79 206-293 268-370 (445)
35 cd06398 PB1_Joka2 The PB1 doma 47.0 25 0.00055 30.3 3.7 35 22-81 22-56 (91)
36 KOG4364 Chromatin assembly fac 46.3 3.9E+02 0.0085 31.4 13.4 10 21-30 49-58 (811)
37 KOG0336 ATP-dependent RNA heli 46.1 22 0.00048 39.3 3.8 34 21-54 215-250 (629)
38 PRK14474 F0F1 ATP synthase sub 44.9 3.3E+02 0.0073 27.2 11.6 21 219-239 32-52 (250)
39 PF15346 ARGLU: Arginine and g 44.9 2.9E+02 0.0062 26.4 14.7 53 145-204 12-64 (149)
40 PF03115 Astro_capsid: Astrovi 43.9 7.6 0.00017 44.9 0.0 12 106-117 693-704 (787)
41 PF05672 MAP7: MAP7 (E-MAP-115 43.7 3.2E+02 0.0069 26.7 14.5 15 243-257 102-116 (171)
42 KOG4661 Hsp27-ERE-TATA-binding 43.6 2.4E+02 0.0051 32.7 11.1 9 344-352 733-741 (940)
43 COG5269 ZUO1 Ribosome-associat 43.1 2.8E+02 0.0062 29.4 10.9 15 410-424 355-369 (379)
44 TIGR03738 PRTRC_C PRTRC system 42.3 16 0.00035 30.5 1.6 18 15-32 12-30 (66)
45 PF07046 CRA_rpt: Cytoplasmic 41.4 1.1E+02 0.0024 23.7 5.7 10 276-285 18-27 (42)
46 PF14454 Prok_Ub: Prokaryotic 39.3 19 0.00042 29.8 1.7 20 15-34 13-33 (65)
47 PRK13428 F0F1 ATP synthase sub 38.5 5.5E+02 0.012 27.9 14.6 10 444-453 305-314 (445)
48 PLN02316 synthase/transferase 37.9 1.1E+02 0.0024 36.9 8.1 28 224-253 255-282 (1036)
49 PF07046 CRA_rpt: Cytoplasmic 37.3 81 0.0017 24.4 4.5 8 261-268 18-25 (42)
50 KOG1363 Predicted regulator of 36.7 2.3E+02 0.0049 31.4 9.6 29 201-229 291-319 (460)
51 PF13904 DUF4207: Domain of un 35.3 4.9E+02 0.011 26.3 15.5 21 233-253 180-200 (264)
52 PLN03086 PRLI-interacting fact 34.9 2.3E+02 0.005 32.2 9.5 13 330-342 90-102 (567)
53 TIGR01069 mutS2 MutS2 family p 33.8 6.4E+02 0.014 29.4 13.1 8 232-239 538-545 (771)
54 PF00769 ERM: Ezrin/radixin/mo 32.1 5.3E+02 0.012 25.8 14.6 11 182-192 4-14 (246)
55 KOG2185 Predicted RNA-processi 31.4 33 0.00071 37.6 2.3 16 122-137 298-313 (486)
56 PF07946 DUF1682: Protein of u 30.7 2.2E+02 0.0049 29.3 8.1 12 191-202 251-262 (321)
57 PF05672 MAP7: MAP7 (E-MAP-115 30.3 5.3E+02 0.011 25.2 13.3 9 175-183 34-42 (171)
58 PRK12472 hypothetical protein; 29.0 2.4E+02 0.0052 31.7 8.2 20 223-242 232-251 (508)
59 PLN02316 synthase/transferase 28.9 1.4E+02 0.003 36.2 6.9 8 434-441 606-613 (1036)
60 PF10446 DUF2457: Protein of u 28.5 39 0.00084 37.2 2.2 8 104-111 97-104 (458)
61 TIGR00570 cdk7 CDK-activating 27.8 5.5E+02 0.012 27.2 10.3 54 133-189 101-154 (309)
62 PF06098 Radial_spoke_3: Radia 26.5 4.7E+02 0.01 27.3 9.5 95 112-226 119-216 (291)
63 COG4942 Membrane-bound metallo 26.2 9.2E+02 0.02 26.7 17.8 21 25-45 38-58 (420)
64 KOG4691 Uncharacterized conser 26.1 7E+02 0.015 25.3 13.3 16 275-290 155-170 (227)
65 PF11521 TFIIE-A_C-term: C-ter 24.8 19 0.00041 31.2 -0.7 33 75-107 23-55 (86)
66 cd03404 Band_7_HflK Band_7_Hfl 24.4 6.3E+02 0.014 24.6 9.6 6 26-31 28-33 (266)
67 PF11002 RDM: RFPL defining mo 24.2 25 0.00055 27.1 0.0 25 20-44 7-31 (42)
68 PTZ00491 major vault protein; 22.5 1.4E+03 0.031 27.5 13.2 24 214-237 676-699 (850)
69 PF09026 CENP-B_dimeris: Centr 22.3 13 0.00028 33.3 -2.2 22 149-170 65-86 (101)
70 TIGR03086 conserved hypothetic 22.2 65 0.0014 30.1 2.3 22 21-42 25-46 (180)
71 PRK00409 recombination and DNA 21.1 1.4E+03 0.03 26.9 13.0 21 222-242 533-553 (782)
72 PF06991 Prp19_bind: Splicing 21.1 6.1E+02 0.013 26.2 9.0 19 112-130 26-44 (276)
73 PF00769 ERM: Ezrin/radixin/mo 21.0 6.5E+02 0.014 25.2 9.0 6 394-399 225-230 (246)
No 1
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=100.00 E-value=6e-69 Score=558.91 Aligned_cols=428 Identities=35% Similarity=0.490 Sum_probs=370.6
Q ss_pred cccccCCCCccCccccCCCCCCChHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccCcceEEEeccccccc
Q 011859 4 IKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDELEN 82 (476)
Q Consensus 4 ~~~e~~cp~~~~~~~~dp~p~w~~~~l~~el~~le~~~~~~~-~~~p~tk~~s~~~~~~~~~~~~~~~fvmrv~~~~~e~ 82 (476)
+.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.+.-+... ++..|||.|++|+++.
T Consensus 3 ~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d~~-------~~~~~~~~~~e~e~~~ 75 (591)
T KOG2412|consen 3 IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRDGR-------RGGGFVMHVSEDEMES 75 (591)
T ss_pred CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHhhh-------ccCCccchhHHHHHHh
Confidence 568999999999999999999999999999999999999999 99999887755433 5788999999999975
Q ss_pred ccc-----ccccccccccccccccccccccccCCCCCCcccccccCchhhhhhhhhhhhhHHHHhhhcccchhHHHHHHH
Q 011859 83 DNE-----RKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLI 157 (476)
Q Consensus 83 ~~~-----~~~e~~~~~~~~~~~~f~c~~l~ls~~~~~~~~~~~~~~~~lm~~~~~~e~~l~el~~~h~~~v~eeir~~~ 157 (476)
+.+ ...|+.+++.|..|++|+|+.||++|.++.+.++... +.|+++|+..++ .++|++.++.++|+++
T Consensus 76 ~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~~~~e~~---~~l~~L~~~~~~----~~q~~~~~~~~~~~ki 148 (591)
T KOG2412|consen 76 DEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEEFDHENE---QDLNKLGLKESA----INQRQTEIKSDIRAKI 148 (591)
T ss_pred cccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhhhhcchh---hhHHHHHHhhcc----chhhhHhHHhhhhhhh
Confidence 553 3448889999999999999999999988888666655 899999999988 6999999999999999
Q ss_pred HHHHHHHHH-HHhhhhHHHHhhHHhHHhHHHHhhhhcHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 011859 158 STLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236 (476)
Q Consensus 158 s~le~~~~~-E~q~s~sa~arveK~~e~r~e~~~~~~~~~qr~~ae~~~~~~~~~qrd~e~~~q~eer~~r~~aA~EEA~ 236 (476)
+.+..-.++ ++..+++.+..++||.++|.+..+|+ .++|+++...+|+|++.++|.|.+.+||.+|++++++..+||+
T Consensus 149 ~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr~Eae 227 (591)
T KOG2412|consen 149 LNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKREEAE 227 (591)
T ss_pred hcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 999888777 89999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCcCCCCCCcchhhhc
Q 011859 237 RKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAG 316 (476)
Q Consensus 237 Rke~A~~EEk~Rqek~k~EaE~~ak~~aeeak~a~~E~~rkaa~EAa~k~~ae~~~~~~~~~~~~~a~~~~a~~~~~~~~ 316 (476)
|++++.|||+.+++.+.++.++.++.|+++.| +|.++|.+.++++|++....+. .++ .++.+.....
T Consensus 228 rk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek---qeee~ke~e~~~~k~~q~~~~~-----eek-----~a~qk~~~~~ 294 (591)
T KOG2412|consen 228 RKRRAHQEELRQKEDEEAELQEQEKIRAEEEK---QEEERKEAEEQAEKEVQDPKAH-----EEK-----LAEQKAVIEK 294 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchhc-----ccc-----cccccccccc
Confidence 99999999999999999999999999999888 3446888888888877655433 222 3444444433
Q ss_pred cccCCCCCcccccchhhHhhchHHHHHHHHHHHHHHHHHHhhhhhccCcccchhhhhccccccccccccchHH-HHHHHH
Q 011859 317 AQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VRTKAS 395 (476)
Q Consensus 317 ~~~~g~~~~~~~~~~~~iraa~sAl~~E~~Rlk~LkeL~~~n~~LK~~~nkelkd~rRqInk~VGQIS~Sk~Q-vr~ks~ 395 (476)
.+.... ++.+.---....++.|.+..+..+.++..+|+.++. +++|.||++|||||.+..| ++++++
T Consensus 295 ~~~~~~-~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~-----------~~kr~in~~~~qis~~~~q~L~qI~d 362 (591)
T KOG2412|consen 295 VTTSSA-SDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQ-----------SLKRAINPPFSQISKSNGQVLRQIFD 362 (591)
T ss_pred ccCCch-hHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHHhhcCCChhhhhhccHHHHHHHHH
Confidence 331111 111111113567899999999999888877766544 5678999999999999988 999999
Q ss_pred HHHHHhcCCC---Cch--HHHHHHHHHHHHhhhcC---CCCCcchhHHHHHHHHHhhCccHHHHHHHHhhhhcccccccc
Q 011859 396 ELVKILNNPL---CPQ--SISLATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKH 467 (476)
Q Consensus 396 ELvqLL~~~q---~Pq--~faLN~fAKKIVsQ~Et---e~p~~AFPLA~Viv~I~sQ~Pe~~DILLAkfHK~CPYtVPk~ 467 (476)
.|.++|.+.. .|+ .||+|+|||++|+|+|+ .+|.+|||||+||++||+|||+|+|+|||+|||+|||+||||
T Consensus 363 kl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~ 442 (591)
T KOG2412|consen 363 KLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPYVVPFH 442 (591)
T ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCcccccc
Confidence 9999998774 477 89999999999999999 468899999999999999999999999999999999999999
Q ss_pred cccc
Q 011859 468 IVFS 471 (476)
Q Consensus 468 ~~~k 471 (476)
++++
T Consensus 443 ~~~~ 446 (591)
T KOG2412|consen 443 IVNS 446 (591)
T ss_pred ccCc
Confidence 9986
No 2
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=99.93 E-value=1.2e-26 Score=224.30 Aligned_cols=108 Identities=26% Similarity=0.351 Sum_probs=86.0
Q ss_pred cccchhhhhccccccccccccchHHHHHHHHHHHHHhcCC----------C--Cch--HHHHHHHHHHHHhhhcCC---C
Q 011859 365 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP----------L--CPQ--SISLATFSKKVVSRCETP---D 427 (476)
Q Consensus 365 ~nkelkd~rRqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~----------q--~Pq--~faLN~fAKKIVsQ~Ete---~ 427 (476)
+++.+.+++|+||++|||||++.+|+..++++|.++|++. . .|. .|+||+|||+||+|+|++ +
T Consensus 22 lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~lAk~iv~Q~e~ev~~~ 101 (256)
T PF07817_consen 22 LKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLLNFLAKKIVSQAETEVSAN 101 (256)
T ss_dssp HHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555888999999999999999999999999999995432 1 233 899999999999999995 4
Q ss_pred CCcchhHHHHHHHHHhhCccHHHHHHHHhhhhccccccccccccc
Q 011859 428 DNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSE 472 (476)
Q Consensus 428 p~~AFPLA~Viv~I~sQ~Pe~~DILLAkfHK~CPYtVPk~~~~k~ 472 (476)
|++|||||.|++.||++||+|+|+|||+||++|||+||+|+++..
T Consensus 102 ~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~~ 146 (256)
T PF07817_consen 102 PESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFTC 146 (256)
T ss_dssp GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T---
T ss_pred CchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCcccC
Confidence 789999999999999999999999999999999999999998764
No 3
>PTZ00121 MAEBL; Provisional
Probab=96.58 E-value=0.037 Score=66.11 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=11.3
Q ss_pred HhHHHHhhhhcHHHHHHHHHHH
Q 011859 183 DMRREMDRKNDTVYQRKIAEAL 204 (476)
Q Consensus 183 e~r~e~~~~~~~~~qr~~ae~~ 204 (476)
+.|++.+-+....+||.+-||.
T Consensus 1113 e~r~~ee~~~r~e~arr~eeAR 1134 (2084)
T PTZ00121 1113 EARKAEEAKKKAEDARKAEEAR 1134 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555554
No 4
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.39 E-value=0.064 Score=62.58 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=7.5
Q ss_pred CChHHHHHHH
Q 011859 25 WSFDALLSEL 34 (476)
Q Consensus 25 w~~~~l~~el 34 (476)
||||-++-||
T Consensus 227 WSLG~ILYEL 236 (1021)
T PTZ00266 227 WALGCIIYEL 236 (1021)
T ss_pred HHHHHHHHHH
Confidence 7777777766
No 5
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=96.35 E-value=0.028 Score=61.47 Aligned_cols=38 Identities=37% Similarity=0.446 Sum_probs=22.1
Q ss_pred HHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011859 217 LKSQIE-ERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAE 257 (476)
Q Consensus 217 ~~~q~e-er~~r~~aA~EEA~Rke~A~~EEk~Rqek~k~EaE 257 (476)
-++++| ||+.+.+ +|++|+..-++.++..||+.|++.+
T Consensus 220 e~kr~Eaerk~~~~---qEe~Rqk~d~~~~~~eqekiR~~ee 258 (591)
T KOG2412|consen 220 EEKREEAERKRRAH---QEELRQKEDEEAELQEQEKIRAEEE 258 (591)
T ss_pred HhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345555 4444433 6666665566666666777777555
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.24 Score=56.58 Aligned_cols=9 Identities=11% Similarity=-0.038 Sum_probs=5.5
Q ss_pred ccccccccc
Q 011859 99 VKRFTCDAL 107 (476)
Q Consensus 99 ~~~f~c~~l 107 (476)
.+.|++.|-
T Consensus 198 ~QlFNa~Dk 206 (1118)
T KOG1029|consen 198 RQLFNALDK 206 (1118)
T ss_pred HHHhhhccc
Confidence 456666664
No 7
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.60 E-value=1.1 Score=51.61 Aligned_cols=55 Identities=40% Similarity=0.482 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011859 235 AKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK-RAALEAEKRAAKEAAEREAAE 289 (476)
Q Consensus 235 A~Rke~A~~EEk~Rqek~k~EaE~~ak~~aeeak-~a~~E~~rkaa~EAa~k~~ae 289 (476)
-+|+|.-.++.++--|+.++++||..|.++||++ ++.+|.+++.+.|-.++-+.|
T Consensus 937 R~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e 992 (1259)
T KOG0163|consen 937 RKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKE 992 (1259)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3344433333344455667777888888887655 565666666665554444433
No 8
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.18 Score=57.72 Aligned_cols=62 Identities=31% Similarity=0.392 Sum_probs=48.3
Q ss_pred HhhhhHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011859 205 DNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALE 273 (476)
Q Consensus 205 ~~~~~~~qrd~e~~~q~eer~~r~~aA~EEA~Rke~A~~EEk~Rqek~k~EaE~~ak~~aeeak~a~~E 273 (476)
-+|++++|+--+.+.+.|||+.|.+ ||-.|+ ..+|++.|.++++++.| +|.+..+.++.+.|
T Consensus 213 ~Kgv~~~qe~La~~qe~eE~qkree---EE~~r~--eeEEer~~ee~E~~~eE--ak~kkKekekek~e 274 (1064)
T KOG1144|consen 213 PKGVRAMQEALAKRQEEEERQKREE---EERLRR--EEEEERRREEEEAQEEE--AKEKKKEKEKEKKE 274 (1064)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4688999999999999999999987 655455 57788888888888888 66666666655555
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=8.6 Score=44.76 Aligned_cols=11 Identities=0% Similarity=0.196 Sum_probs=5.2
Q ss_pred HHHHHHhhhcC
Q 011859 415 FSKKVVSRCET 425 (476)
Q Consensus 415 fAKKIVsQ~Et 425 (476)
+.+.|=.|++.
T Consensus 543 irq~ikdqlde 553 (1118)
T KOG1029|consen 543 IRQAIKDQLDE 553 (1118)
T ss_pred HHHHHHHHHHH
Confidence 44445555443
No 10
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=93.02 E-value=2.5 Score=44.06 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=8.5
Q ss_pred ccHHHHHHHHhhhhcccccc
Q 011859 446 PQVMDILLGEFHRACIYTVP 465 (476)
Q Consensus 446 Pe~~DILLAkfHK~CPYtVP 465 (476)
|.|-+-.+.-+.+..||-+|
T Consensus 309 ~~lD~AAl~AV~ka~p~P~P 328 (346)
T TIGR02794 309 PALCQAALAAVAKAAKLPMP 328 (346)
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 44444444444444444333
No 11
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.75 E-value=1 Score=52.92 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011859 238 KERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEK 276 (476)
Q Consensus 238 ke~A~~EEk~Rqek~k~EaE~~ak~~aeeak~a~~E~~r 276 (476)
+|+..++||+|.|++++|.|...+++.|.++..++|.+|
T Consensus 473 rer~er~erer~Erer~erEr~erer~erer~~r~e~er 511 (1021)
T PTZ00266 473 RERMERIERERLERERLERERLERDRLERDRLDRLERER 511 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666655554444444444433334333
No 12
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=91.61 E-value=1.1 Score=47.06 Aligned_cols=28 Identities=46% Similarity=0.521 Sum_probs=14.1
Q ss_pred HHHHHHHH-HHHHHHHHH-HHHHHHHHHHH
Q 011859 260 AKLRAEEA-KRAALEAEK-RAAKEAAEREA 287 (476)
Q Consensus 260 ak~~aeea-k~a~~E~~r-kaa~EAa~k~~ 287 (476)
+++++|++ .++..|+++ ++++||++++.
T Consensus 145 ~kk~aE~a~aka~aEA~k~Ka~aeAkkkAe 174 (387)
T COG3064 145 QKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444444 355555555 55555555544
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=89.97 E-value=34 Score=40.27 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=6.7
Q ss_pred ccCCCCCC-ChHHHH
Q 011859 18 AIDPEPDW-SFDALL 31 (476)
Q Consensus 18 ~~dp~p~w-~~~~l~ 31 (476)
|-+--|+. +|+||-
T Consensus 700 Mq~GyPSR~~F~dLY 714 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLY 714 (1259)
T ss_pred HhcCCCccccHHHHH
Confidence 33444554 355554
No 14
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=88.41 E-value=13 Score=40.89 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=7.4
Q ss_pred CcceEEEecccc
Q 011859 68 ARAFVIRVSDDE 79 (476)
Q Consensus 68 ~~~fvmrv~~~~ 79 (476)
++-||+|+=|..
T Consensus 49 ~~y~ii~~vd~~ 60 (489)
T PF05262_consen 49 GRYYIIHAVDPE 60 (489)
T ss_pred CcEEEEEecCcc
Confidence 666777765443
No 15
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=85.83 E-value=1.8 Score=48.37 Aligned_cols=81 Identities=19% Similarity=0.406 Sum_probs=58.8
Q ss_pred cccchhhhhccccccccccccchHHHHHHHHHHH--HHhcCCCCchHHHHHHHHHHHHh-hhcCCCCCcchhHHHHHHHH
Q 011859 365 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELV--KILNNPLCPQSISLATFSKKVVS-RCETPDDNVAMSCGYVIVLV 441 (476)
Q Consensus 365 ~nkelkd~rRqInk~VGQIS~Sk~Qvr~ks~ELv--qLL~~~q~Pq~faLN~fAKKIVs-Q~Ete~p~~AFPLA~Viv~I 441 (476)
.+.+|-.+++.|++.||.+.. +++..++.+|. |+|.| -++||+.||. |+-+|. +.-.+|.+++.|
T Consensus 157 QRmnWEalkksInglInkvn~--sNi~~ii~eLfqeNiirg--------Rgl~crsv~~aq~asp~--ft~vyaALvAvi 224 (739)
T KOG2140|consen 157 QRMNWEALKKSINGLINKVNA--SNIQEIIRELFQENIIRG--------RGLLCRSVMQAQAASPG--FTPVYAALVAVI 224 (739)
T ss_pred HHHHHHHHHHHhHHHHhhhhH--HHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHhcCCC--CcHHHHHHHHHH
Confidence 355688899999999988754 45666777764 44544 3457777775 333333 455689999999
Q ss_pred HhhCccHHHHHHHHhh
Q 011859 442 ASQVPQVMDILLGEFH 457 (476)
Q Consensus 442 ~sQ~Pe~~DILLAkfH 457 (476)
-+.||++|.+||-++.
T Consensus 225 NskfP~IgElLlkrLi 240 (739)
T KOG2140|consen 225 NSKFPQIGELLLKRLI 240 (739)
T ss_pred ccCCchHHHHHHHHHH
Confidence 9999999999998874
No 16
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=85.32 E-value=18 Score=41.55 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=5.5
Q ss_pred hhhcHHHHHHHHH
Q 011859 190 RKNDTVYQRKIAE 202 (476)
Q Consensus 190 ~~~~~~~qr~~ae 202 (476)
+||..+.|+.-.+
T Consensus 274 Krlk~~~~~eek~ 286 (811)
T KOG4364|consen 274 KRLKEKEQKEEKK 286 (811)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 17
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.54 E-value=11 Score=38.81 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhc
Q 011859 412 LATFSKKVVSRCE 424 (476)
Q Consensus 412 LN~fAKKIVsQ~E 424 (476)
|+.+||=|=.++-
T Consensus 262 l~AVAkfIkqrGR 274 (299)
T KOG3054|consen 262 LAAVAKFIKQRGR 274 (299)
T ss_pred HHHHHHHHHHcCc
Confidence 7778876666553
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=81.21 E-value=54 Score=39.17 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHHH
Q 011859 148 GVKEEIRNLISTLET 162 (476)
Q Consensus 148 ~v~eeir~~~s~le~ 162 (476)
+.-|+|+..+-.||.
T Consensus 773 ~t~eev~~a~~~le~ 787 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEE 787 (1018)
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 19
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=79.46 E-value=3.2 Score=36.88 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=57.4
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCc-cHHHHH
Q 011859 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-QVMDIL 452 (476)
Q Consensus 374 RqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~q~Pq~faLN~fAKKIVsQ~Ete~p~~AFPLA~Viv~I~sQ~P-e~~DIL 452 (476)
|+|+..+|+|+ .+++...+.+|.++.... .| ..+..+++.|++.+... |.+...+|.++..+...+| .|+..|
T Consensus 2 r~v~~~lnklt--~~n~~~~~~~l~~~~~~~-~~--~~~~~i~~~i~~~a~~~-~~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 2 RKVRGILNKLT--PSNFESIIDELIKLNWSD-DP--ETLKEIVKLIFEKAVEE-PNFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHHHCS--STTHHHHHHHHHHHHHHS-CH--HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHCC--HHHHHHHHHHHHHHHhhc-cH--HHHHHHHHHHhhhhhcC-chHHHHHHHHHHHHhccchhhHHHHH
Confidence 56777788888 445667777777776644 22 45666666666665442 2467789999999999999 999999
Q ss_pred HHHhhhh
Q 011859 453 LGEFHRA 459 (476)
Q Consensus 453 LAkfHK~ 459 (476)
+.++++.
T Consensus 76 l~~~~~~ 82 (209)
T PF02854_consen 76 LNRCQEE 82 (209)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 20
>PLN03086 PRLI-interacting factor K; Provisional
Probab=74.33 E-value=17 Score=40.67 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=15.7
Q ss_pred hCccHHHHHHHHhhhhccccccccc
Q 011859 444 QVPQVMDILLGEFHRACIYTVPKHI 468 (476)
Q Consensus 444 Q~Pe~~DILLAkfHK~CPYtVPk~~ 468 (476)
..++.-.+|=-.|..-+..|++-.+
T Consensus 198 di~npKavLE~~Lr~~stLT~Gd~i 222 (567)
T PLN03086 198 DLPNHKAVLETALRQHATLSEDDVL 222 (567)
T ss_pred CcccHHHHHHHHhhcCccccCCCEE
Confidence 3455666676777766777666543
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.23 E-value=1.9e+02 Score=33.36 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccCcccchhhhhccccccccccccchHH---HHHHHHHHHHHh
Q 011859 362 KLSSNEDFSGYEKDISRLIRQIRGLKDN---VRTKASELVKIL 401 (476)
Q Consensus 362 K~~~nkelkd~rRqInk~VGQIS~Sk~Q---vr~ks~ELvqLL 401 (476)
|+.+=.-||+-+|+|...-+||..--.. ++.++-+|.-++
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444445788899999999999654433 466666665554
No 22
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=33 Score=35.41 Aligned_cols=15 Identities=73% Similarity=1.039 Sum_probs=8.2
Q ss_pred HHHHhhhHHHHHHHHHH
Q 011859 222 EERKIRSDAAYEEAKRK 238 (476)
Q Consensus 222 eer~~r~~aA~EEA~Rk 238 (476)
|+||-+.+ ++||+||
T Consensus 129 EeRk~ke~--~eE~erK 143 (299)
T KOG3054|consen 129 EERKRKED--YEEAERK 143 (299)
T ss_pred HHHhHHHH--HHHHHHh
Confidence 34444444 6666665
No 23
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=70.27 E-value=1e+02 Score=29.49 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011859 217 LKSQIEERKIRSDAAYEEAKRK-ERALQEEKIRQEKVKA 254 (476)
Q Consensus 217 ~~~q~eer~~r~~aA~EEA~Rk-e~A~~EEk~Rqek~k~ 254 (476)
++.||+|++-... .|+++|+ |-...|+++..+++..
T Consensus 63 i~~QieEk~r~k~--~E~err~~EE~~EE~Rl~rere~~ 99 (157)
T PF15236_consen 63 IKQQIEEKRRQKQ--EEEERRRREEEEEEERLAREREEL 99 (157)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556665544433 1233222 3344444444444433
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.50 E-value=1.5e+02 Score=36.46 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=46.5
Q ss_pred cCcceEEEeccccccccc-----cccccccccccc----------cccccccccccccCCCCCCcccccccCchhhhhhh
Q 011859 67 NARAFVIRVSDDELENDN-----ERKGEEVHNGSL----------VAVKRFTCDALYLSESDDSDDDVALGGESYLMDEV 131 (476)
Q Consensus 67 ~~~~fvmrv~~~~~e~~~-----~~~~e~~~~~~~----------~~~~~f~c~~l~ls~~~~~~~~~~~~~~~~lm~~~ 131 (476)
..-|||=-|+-|+|.+.= |..+.+.+.-.. --|=.||| ..++|++..++....... ..
T Consensus 352 ~~pP~vPevssd~DTsnFd~~~dd~~~~e~~p~~~~~~f~Gn~LPFIGfTy~~-~~~~ss~~~~~~~~~~~~------~~ 424 (1317)
T KOG0612|consen 352 SVPPVVPEVSSDDDTSNFDVDEDDLRDAETFPPRIPKAFSGNHLPFIGFTYTH-ESLLSSSTPLKNEKEANA------ER 424 (1317)
T ss_pred cCCCCCCcCCCCCccccccccccccchhhccCCCCCCCCcCCcCCeeeeeecc-chhhccCCcccchhhccc------cc
Confidence 456888889888885322 222233333101 11556677 666666655554333311 11
Q ss_pred hhhhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 011859 132 GLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALA 176 (476)
Q Consensus 132 ~~~e~~l~el~~~h~~~v~eeir~~~s~le~~~~~E~q~s~sa~a 176 (476)
+-+.+ -|+-+.+..||-.+.|+.+..-.-.+
T Consensus 425 ~~~~~--------------~e~~~~~~~le~~l~~~~~~~~~~~~ 455 (1317)
T KOG0612|consen 425 SDVDS--------------QEIHKTLQILEQSLVNEMQEKEKLDE 455 (1317)
T ss_pred cchhh--------------hccccchhhcccchhhHHHHhhhHHH
Confidence 11111 34556677777778887766544433
No 25
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=67.24 E-value=1.1e+02 Score=33.43 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=5.9
Q ss_pred cccccccccccC
Q 011859 99 VKRFTCDALYLS 110 (476)
Q Consensus 99 ~~~f~c~~l~ls 110 (476)
..-||.---++|
T Consensus 194 a~vft~i~~~~s 205 (429)
T PRK00247 194 AAVFTAINMAMS 205 (429)
T ss_pred HHHHHHHHHHHH
Confidence 445555444444
No 26
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=66.98 E-value=22 Score=31.83 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=54.4
Q ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCccHHHHHH
Q 011859 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 453 (476)
Q Consensus 374 RqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~q~Pq~faLN~fAKKIVsQ~Ete~p~~AFPLA~Viv~I~sQ~Pe~~DILL 453 (476)
++|+..++.|+ .+++...+.+|..+..+. | -....+++.|+..+..+ |.....+|.++..+...+|+|+..|+
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~--~--~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~~f~~~ll 74 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD--K--NLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNPDFGSLLL 74 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778887 467888888998888653 3 24444444444444432 24567789999999999999988888
Q ss_pred HHhhhh
Q 011859 454 GEFHRA 459 (476)
Q Consensus 454 AkfHK~ 459 (476)
..+...
T Consensus 75 ~~~~~~ 80 (200)
T smart00543 75 ERLQEE 80 (200)
T ss_pred HHHHHH
Confidence 776643
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=66.33 E-value=1.8e+02 Score=35.15 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhHHHHhhHHhHHhHHHHhhhhcHHHHHHHHHHHHhhhhHh
Q 011859 160 LETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAV 211 (476)
Q Consensus 160 le~~~~~E~q~s~sa~arveK~~e~r~e~~~~~~~~~qr~~ae~~~~~~~~~ 211 (476)
|.--+--.++++.+.+.|.+| .-+++-+....+++.|-=+=+||+.+
T Consensus 752 v~FN~a~v~kkla~s~lr~~k-----~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 752 VKFNLALVLKKLAESILRLEK-----RTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHhHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445567777777777766 44555555555555554444555443
No 28
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=64.00 E-value=66 Score=38.04 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhHhhhhHHHHHHHHHHHhhhH
Q 011859 197 QRKIAEALDNHLTAVQRDHELKSQIEERKIRSD 229 (476)
Q Consensus 197 qr~~ae~~~~~~~~~qrd~e~~~q~eer~~r~~ 229 (476)
=|.+.|+|.+. |-..|.++.++|-++|.+
T Consensus 216 v~~~qe~La~~----qe~eE~qkreeEE~~r~e 244 (1064)
T KOG1144|consen 216 VRAMQEALAKR----QEEEERQKREEEERLRRE 244 (1064)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35666666433 334455555666666655
No 29
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=60.08 E-value=3.7e+02 Score=32.27 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHHHHhccCC
Q 011859 24 DWSFDALLSELNSLETRLNASS 45 (476)
Q Consensus 24 ~w~~~~l~~el~~le~~~~~~~ 45 (476)
+++-..|-.-|.++=.+++.++
T Consensus 399 eF~PL~l~k~lq~ll~~ls~~~ 420 (988)
T KOG2072|consen 399 EFHPLKLCKKLQPLLDKLSESP 420 (988)
T ss_pred cCCHHHHHHHHHHHHHHHHcCC
Confidence 3444566666677777777665
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.79 E-value=3.7e+02 Score=31.18 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=28.0
Q ss_pred hHHHHhhHHhHHhHHHHhhhhcHHHHHHHHHHHHhhhhHhhhh-HHHHHHHHHHHhh
Q 011859 172 NSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRD-HELKSQIEERKIR 227 (476)
Q Consensus 172 ~sa~arveK~~e~r~e~~~~~~~~~qr~~ae~~~~~~~~~qrd-~e~~~q~eer~~r 227 (476)
.+++.|+|...+. -|-|.+.-|.+-+-|-.|++.+.-+ ..+|+.+..-+..
T Consensus 417 ~~a~~rLE~dvkk-----LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~e 468 (697)
T PF09726_consen 417 PDAISRLEADVKK-----LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQE 468 (697)
T ss_pred hHHHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 3455666655443 3455666677766666665555543 4455555443333
No 31
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=54.69 E-value=2e+02 Score=27.45 Aligned_cols=6 Identities=83% Similarity=1.121 Sum_probs=2.9
Q ss_pred HHHHHH
Q 011859 233 EEAKRK 238 (476)
Q Consensus 233 EEA~Rk 238 (476)
++++++
T Consensus 65 ~e~r~k 70 (149)
T PF15346_consen 65 EEARRK 70 (149)
T ss_pred HHHHhh
Confidence 455444
No 32
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=52.67 E-value=4.9e+02 Score=31.37 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=18.3
Q ss_pred hHHHHhhHHhHHhHHHHhhhhcHHH
Q 011859 172 NSALAQVEKDRDMRREMDRKNDTVY 196 (476)
Q Consensus 172 ~sa~arveK~~e~r~e~~~~~~~~~ 196 (476)
..+|--.+++-..|.+-|+.+=-.+
T Consensus 702 ~EeiPL~e~~~~~~~~~d~e~~e~~ 726 (988)
T KOG2072|consen 702 LEEIPLIEKAYDERQEEDRELYEAR 726 (988)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 4467778888888888888776533
No 33
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=51.53 E-value=2.6e+02 Score=31.20 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=15.8
Q ss_pred cccccccccccCCCCCCccccccc--Cchhhhhhhhh
Q 011859 99 VKRFTCDALYLSESDDSDDDVALG--GESYLMDEVGL 133 (476)
Q Consensus 99 ~~~f~c~~l~ls~~~~~~~~~~~~--~~~~lm~~~~~ 133 (476)
+..|.+|=++|.+..+.|.=.+++ ...|||...||
T Consensus 62 ~~~~~ADi~~ig~~a~vdhI~nlrrIiagyl~~aygY 98 (489)
T PF05262_consen 62 KKKLDADIFIIGENARVDHINNLRRIIAGYLEAAYGY 98 (489)
T ss_pred ccCCCCcEEEEcCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 344555555555544444433332 11255555554
No 34
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.21 E-value=1.1e+02 Score=32.43 Aligned_cols=79 Identities=37% Similarity=0.519 Sum_probs=0.0
Q ss_pred hhhhHhh--hhHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011859 206 NHLTAVQ--RDHELKSQIEERKIR----------------------SDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAK 261 (476)
Q Consensus 206 ~~~~~~q--rd~e~~~q~eer~~r----------------------~~aA~EEA~Rke~A~~EEk~Rqek~k~EaE~~ak 261 (476)
+|||.|| .-+|-+.|||-.+.| +|.-.+-|.+|.+.+.-.+.+.-..-+|.+ |
T Consensus 268 rhlsevqiakraeerrqieterlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeee---k 344 (445)
T KOG2891|consen 268 RHLSEVQIAKRAEERRQIETERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEE---K 344 (445)
T ss_pred hhhhHHHHHHHHHHHhhhhHHHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011859 262 LRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293 (476)
Q Consensus 262 ~~aeeak~a~~E~~rkaa~EAa~k~~ae~~~~ 293 (476)
++.+++. +|+.|.|-.++++.+.+.+
T Consensus 345 kr~eeae------erqraeekeq~eaee~~ra 370 (445)
T KOG2891|consen 345 KREEEAE------ERQRAEEKEQKEAEELERA 370 (445)
T ss_pred HHHHHHH------HhhhhHHHHHHHHHHHHHH
No 35
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=47.05 E-value=25 Score=30.31 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHHHHHHHHhccCCCCcccccccccccccCccccccCcceEEEecccccc
Q 011859 22 EPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELE 81 (476)
Q Consensus 22 ~p~w~~~~l~~el~~le~~~~~~~~~~p~tk~~s~~~~~~~~~~~~~~~fvmrv~~~~~e 81 (476)
.|+|+|..|..++..+ |++| ....|+++-.|||-|
T Consensus 22 ~~d~~~~~L~~kI~~~--------f~l~-----------------~~~~~~l~Y~Dedgd 56 (91)
T cd06398 22 QLDLNMDGLREKVEEL--------FSLS-----------------PDADLSLTYTDEDGD 56 (91)
T ss_pred cCCCCHHHHHHHHHHH--------hCCC-----------------CCCcEEEEEECCCCC
Confidence 4899999999998764 2222 145788888887554
No 36
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=46.35 E-value=3.9e+02 Score=31.39 Aligned_cols=10 Identities=40% Similarity=0.364 Sum_probs=4.7
Q ss_pred CCCCCChHHH
Q 011859 21 PEPDWSFDAL 30 (476)
Q Consensus 21 p~p~w~~~~l 30 (476)
-+||-.|+++
T Consensus 49 ~~~d~~~~d~ 58 (811)
T KOG4364|consen 49 LEMDGLFDDF 58 (811)
T ss_pred cccchhHHHH
Confidence 3445455444
No 37
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.10 E-value=22 Score=39.30 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHHHHHHH--HhccCCCCccccccc
Q 011859 21 PEPDWSFDALLSELNSLET--RLNASSKPVPFTKTK 54 (476)
Q Consensus 21 p~p~w~~~~l~~el~~le~--~~~~~~~~~p~tk~~ 54 (476)
|.|.|||++-...--++=. +-+++.+|+|++-+.
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQa 250 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQA 250 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcc
Confidence 9999999998877666533 567899999997664
No 38
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=44.95 E-value=3.3e+02 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=10.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 011859 219 SQIEERKIRSDAAYEEAKRKE 239 (476)
Q Consensus 219 ~q~eer~~r~~aA~EEA~Rke 239 (476)
+=+++|+.+.....++|+...
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~ 52 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQ 52 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555554443
No 39
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=44.91 E-value=2.9e+02 Score=26.43 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=32.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHHHhhhhcHHHHHHHHHHH
Q 011859 145 HQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEAL 204 (476)
Q Consensus 145 h~~~v~eeir~~~s~le~~~~~E~q~s~sa~arveK~~e~r~e~~~~~~~~~qr~~ae~~ 204 (476)
-.-+|-+.|+.++-..=. ..||+..+.. .+.+.|+.|...+..+..+.-..++
T Consensus 12 ~akRvEe~V~krVee~l~--~eei~~ei~r-----Rvee~r~~me~~v~~ele~ek~~~l 64 (149)
T PF15346_consen 12 TAKRVEEAVRKRVEEELN--SEEIEKEIQR-----RVEEERKKMEKQVAEELEREKEEAL 64 (149)
T ss_pred HHHHHHHHHHHHHHHHHh--hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777654222 4455554432 3456778888888777777666655
No 40
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=43.88 E-value=7.6 Score=44.92 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred ccccCCCCCCcc
Q 011859 106 ALYLSESDDSDD 117 (476)
Q Consensus 106 ~l~ls~~~~~~~ 117 (476)
||.-++++|+||
T Consensus 693 DL~~~seSe~eD 704 (787)
T PF03115_consen 693 DLHPSSESEDED 704 (787)
T ss_dssp ------------
T ss_pred ccCccccccccc
Confidence 555554444444
No 41
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=43.74 E-value=3.2e+02 Score=26.67 Aligned_cols=15 Identities=60% Similarity=0.623 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 011859 243 QEEKIRQEKVKAEAE 257 (476)
Q Consensus 243 ~EEk~Rqek~k~EaE 257 (476)
+++..+..+.+-+|+
T Consensus 102 ~Ee~e~~~kQkeeae 116 (171)
T PF05672_consen 102 QEEQERLQKQKEEAE 116 (171)
T ss_pred HHHHHHHHHhHHHHH
Confidence 444444444444444
No 42
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=43.65 E-value=2.4e+02 Score=32.72 Aligned_cols=9 Identities=44% Similarity=0.453 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 011859 344 EQKRLQKLK 352 (476)
Q Consensus 344 E~~Rlk~Lk 352 (476)
|..|..++.
T Consensus 733 e~kr~a~~d 741 (940)
T KOG4661|consen 733 ESKRKAVLD 741 (940)
T ss_pred hhhhhhHhh
Confidence 444544443
No 43
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=43.06 E-value=2.8e+02 Score=29.43 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhc
Q 011859 410 ISLATFSKKVVSRCE 424 (476)
Q Consensus 410 faLN~fAKKIVsQ~E 424 (476)
-++.-|||-||..+-
T Consensus 355 ~v~~~~ak~~id~g~ 369 (379)
T COG5269 355 AVFDEFAKMFIDRGK 369 (379)
T ss_pred HHHHHHHHHHHhcCC
Confidence 456677777776664
No 44
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=42.26 E-value=16 Score=30.52 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.2
Q ss_pred Ccc-ccCCCCCCChHHHHH
Q 011859 15 DGI-AIDPEPDWSFDALLS 32 (476)
Q Consensus 15 ~~~-~~dp~p~w~~~~l~~ 32 (476)
+|| --||+|.||.+++++
T Consensus 12 ~gi~L~DP~p~~spe~V~d 30 (66)
T TIGR03738 12 NGVRLADPSPAMSPEQVRD 30 (66)
T ss_pred CCeEcCCCCCCCCHHHHHH
Confidence 453 359999999999875
No 45
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=41.39 E-value=1.1e+02 Score=23.69 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 011859 276 KRAAKEAAER 285 (476)
Q Consensus 276 rkaa~EAa~k 285 (476)
.+.++||.+.
T Consensus 18 KqraAEA~k~ 27 (42)
T PF07046_consen 18 KQRAAEATKA 27 (42)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 46
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=39.28 E-value=19 Score=29.77 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.3
Q ss_pred Cccc-cCCCCCCChHHHHHHH
Q 011859 15 DGIA-IDPEPDWSFDALLSEL 34 (476)
Q Consensus 15 ~~~~-~dp~p~w~~~~l~~el 34 (476)
+|+- -||.|.||.+++++=.
T Consensus 13 ~g~~L~DP~p~~spe~V~~~y 33 (65)
T PF14454_consen 13 NGITLPDPNPSLSPEEVRDFY 33 (65)
T ss_pred CCEECCCCCCCCCHHHHHHHH
Confidence 5643 4899999999987633
No 47
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=38.48 E-value=5.5e+02 Score=27.87 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.8
Q ss_pred hCccHHHHHH
Q 011859 444 QVPQVMDILL 453 (476)
Q Consensus 444 Q~Pe~~DILL 453 (476)
..|+|..+|.
T Consensus 305 ~~~el~~~L~ 314 (445)
T PRK13428 305 AQPRLAILLS 314 (445)
T ss_pred cCHHHHHHHh
Confidence 4455555443
No 48
>PLN02316 synthase/transferase
Probab=37.91 E-value=1.1e+02 Score=36.88 Aligned_cols=28 Identities=43% Similarity=0.500 Sum_probs=13.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011859 224 RKIRSDAAYEEAKRKERALQEEKIRQEKVK 253 (476)
Q Consensus 224 r~~r~~aA~EEA~Rke~A~~EEk~Rqek~k 253 (476)
+++-.+.|.|||.|++++ ||..|.+.+|
T Consensus 255 ~~e~~~la~e~ae~~~~~--ee~~r~~~~k 282 (1036)
T PLN02316 255 RRELEKLAKEEAERERQA--EEQRRREEEK 282 (1036)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 333355666777666422 2444444333
No 49
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=37.31 E-value=81 Score=24.37 Aligned_cols=8 Identities=63% Similarity=0.617 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 011859 261 KLRAEEAK 268 (476)
Q Consensus 261 k~~aeeak 268 (476)
|+++.|+.
T Consensus 18 KqraAEA~ 25 (42)
T PF07046_consen 18 KQRAAEAT 25 (42)
T ss_pred HHHHHHHH
Confidence 44444444
No 50
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=36.72 E-value=2.3e+02 Score=31.36 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=14.7
Q ss_pred HHHHHhhhhHhhhhHHHHHHHHHHHhhhH
Q 011859 201 AEALDNHLTAVQRDHELKSQIEERKIRSD 229 (476)
Q Consensus 201 ae~~~~~~~~~qrd~e~~~q~eer~~r~~ 229 (476)
..+...++...|+....++--++|.++.+
T Consensus 291 ~~~~~~~~~~~q~~~~~~~er~~r~~~~~ 319 (460)
T KOG1363|consen 291 LVAFEEEERRLQMRRSEQDEREARLALEQ 319 (460)
T ss_pred HhhhhhhhHHHhhcccchhHHHHHHHHHH
Confidence 34444555555555444444455555554
No 51
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=35.33 E-value=4.9e+02 Score=26.32 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011859 233 EEAKRKERALQEEKIRQEKVK 253 (476)
Q Consensus 233 EEA~Rke~A~~EEk~Rqek~k 253 (476)
|+|+++-+.=...|..+++.+
T Consensus 180 e~a~~~~q~W~~kK~~e~~~~ 200 (264)
T PF13904_consen 180 EEAKQRYQEWERKKKEEQQQK 200 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555444433444443333
No 52
>PLN03086 PRLI-interacting factor K; Provisional
Probab=34.94 E-value=2.3e+02 Score=32.19 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=7.1
Q ss_pred chhhHhhchHHHH
Q 011859 330 LQSAVRATESALN 342 (476)
Q Consensus 330 ~~~~iraa~sAl~ 342 (476)
.|.+|.-=.|||.
T Consensus 90 ~GdKI~LPpSaL~ 102 (567)
T PLN03086 90 NGDKIKLPPSCFT 102 (567)
T ss_pred CCCeEEcCHHHHH
Confidence 3345555666665
No 53
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.84 E-value=6.4e+02 Score=29.43 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 011859 232 YEEAKRKE 239 (476)
Q Consensus 232 ~EEA~Rke 239 (476)
.+|+++..
T Consensus 538 ~~e~~~~~ 545 (771)
T TIGR01069 538 LKEQEKLK 545 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 54
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.07 E-value=5.3e+02 Score=25.81 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=6.0
Q ss_pred HHhHHHHhhhh
Q 011859 182 RDMRREMDRKN 192 (476)
Q Consensus 182 ~e~r~e~~~~~ 192 (476)
...+.+++.||
T Consensus 4 Er~k~Ele~rL 14 (246)
T PF00769_consen 4 EREKQELEERL 14 (246)
T ss_dssp HHHCHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33455666665
No 55
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=31.42 E-value=33 Score=37.57 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=12.3
Q ss_pred cCchhhhhhhhhhhhh
Q 011859 122 GGESYLMDEVGLADGA 137 (476)
Q Consensus 122 ~~~~~lm~~~~~~e~~ 137 (476)
++-+-||.||||..|-
T Consensus 298 GIgsKLM~kMGY~~G~ 313 (486)
T KOG2185|consen 298 GIGSKLMAKMGYREGM 313 (486)
T ss_pred hHHHHHHHHhchhhcc
Confidence 4456799999998764
No 56
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=30.71 E-value=2.2e+02 Score=29.28 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=4.9
Q ss_pred hhcHHHHHHHHH
Q 011859 191 KNDTVYQRKIAE 202 (476)
Q Consensus 191 ~~~~~~qr~~ae 202 (476)
+|..+..+++..
T Consensus 251 ~l~~e~~~K~~k 262 (321)
T PF07946_consen 251 KLSPEAKKKAKK 262 (321)
T ss_pred eeCHHHHHHHHH
Confidence 344444444433
No 57
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=30.28 E-value=5.3e+02 Score=25.21 Aligned_cols=9 Identities=44% Similarity=0.778 Sum_probs=4.6
Q ss_pred HHhhHHhHH
Q 011859 175 LAQVEKDRD 183 (476)
Q Consensus 175 ~arveK~~e 183 (476)
+||.+|.+|
T Consensus 34 lAReQkErE 42 (171)
T PF05672_consen 34 LAREQKERE 42 (171)
T ss_pred HHHHHhhhH
Confidence 455555544
No 58
>PRK12472 hypothetical protein; Provisional
Probab=28.95 E-value=2.4e+02 Score=31.73 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=11.4
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 011859 223 ERKIRSDAAYEEAKRKERAL 242 (476)
Q Consensus 223 er~~r~~aA~EEA~Rke~A~ 242 (476)
.-+.|.++...-|-|.-.++
T Consensus 232 ~~~~~a~~~l~~adk~l~~a 251 (508)
T PRK12472 232 RAKARADAELKRADKALAAA 251 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44566666666665553333
No 59
>PLN02316 synthase/transferase
Probab=28.90 E-value=1.4e+02 Score=36.16 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 011859 434 CGYVIVLV 441 (476)
Q Consensus 434 LA~Viv~I 441 (476)
||-|+..|
T Consensus 606 LgDVV~sL 613 (1036)
T PLN02316 606 LGDVVTSL 613 (1036)
T ss_pred HHHHHHHH
Confidence 33444433
No 60
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=28.48 E-value=39 Score=37.17 Aligned_cols=8 Identities=13% Similarity=-0.130 Sum_probs=4.6
Q ss_pred ccccccCC
Q 011859 104 CDALYLSE 111 (476)
Q Consensus 104 c~~l~ls~ 111 (476)
.||=|=||
T Consensus 97 ~ddG~~TD 104 (458)
T PF10446_consen 97 DDDGNETD 104 (458)
T ss_pred cccCccCc
Confidence 35666663
No 61
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.82 E-value=5.5e+02 Score=27.18 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=36.5
Q ss_pred hhhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHHHh
Q 011859 133 LADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMD 189 (476)
Q Consensus 133 ~~e~~l~el~~~h~~~v~eeir~~~s~le~~~~~E~q~s~sa~arveK~~e~r~e~~ 189 (476)
-+|.+.+.|.+. +.| ++...+|...+..+..+|.+......+=+.+-+.+.+.+
T Consensus 101 ~vEdii~nL~~~--~d~-~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E 154 (309)
T TIGR00570 101 EVEDIVYNLTNN--IDL-ENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFE 154 (309)
T ss_pred HHHHHHHHhhcC--CcH-HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 488888998876 444 457888888888888888877665555444444444333
No 62
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=26.52 E-value=4.7e+02 Score=27.32 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCcccccccCch---hhhhhhhhhhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHHH
Q 011859 112 SDDSDDDVALGGES---YLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREM 188 (476)
Q Consensus 112 ~~~~~~~~~~~~~~---~lm~~~~~~e~~l~el~~~h~~~v~eeir~~~s~le~~~~~E~q~s~sa~arveK~~e~r~e~ 188 (476)
.+++=+|-|.+|.| .|..|+ +|-||+|+..+.-|.---.-....-.+-++=+.|+||-- +.++..+.|-
T Consensus 119 ~~gdLFDFd~EV~PiLeVLVgKt--lEQAl~EV~EEeEL~~lr~~q~~fe~~R~aEl~e~qrlE------~~e~r~~eEk 190 (291)
T PF06098_consen 119 EEGDLFDFDEEVKPILEVLVGKT--LEQALMEVMEEEELAALRRQQRAFEELRNAELAEVQRLE------EAEKRRREEK 190 (291)
T ss_pred ccccccchHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred hhhhcHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Q 011859 189 DRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKI 226 (476)
Q Consensus 189 ~~~~~~~~qr~~ae~~~~~~~~~qrd~e~~~q~eer~~ 226 (476)
+||++-+-++...+.+ +..++..|..
T Consensus 191 erR~~q~~~~~~~~~~------------~~~Ki~Ar~~ 216 (291)
T PF06098_consen 191 ERRIKQQKERLEKEKE------------LREKIAARAF 216 (291)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHH
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.20 E-value=9.2e+02 Score=26.68 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=13.0
Q ss_pred CChHHHHHHHHHHHHHhccCC
Q 011859 25 WSFDALLSELNSLETRLNASS 45 (476)
Q Consensus 25 w~~~~l~~el~~le~~~~~~~ 45 (476)
-.++..-.||.+++.++....
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~ 58 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ 58 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777766655
No 64
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.14 E-value=7e+02 Score=25.30 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 011859 275 EKRAAKEAAEREAAEN 290 (476)
Q Consensus 275 ~rkaa~EAa~k~~ae~ 290 (476)
+.|.++|..=+..+++
T Consensus 155 a~k~qae~eVl~~ier 170 (227)
T KOG4691|consen 155 AWKQQAEREVLQLIER 170 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433444444
No 65
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=24.75 E-value=19 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=15.7
Q ss_pred ecccccccccccccccccccccccccccccccc
Q 011859 75 VSDDELENDNERKGEEVHNGSLVAVKRFTCDAL 107 (476)
Q Consensus 75 v~~~~~e~~~~~~~e~~~~~~~~~~~~f~c~~l 107 (476)
+...+.+++|+.++.+.-..|.|+|+.|.++++
T Consensus 23 ~~~~d~~~dde~ee~~d~p~V~V~Gr~~~~~eV 55 (86)
T PF11521_consen 23 VDEEDSDEDDEFEEVEDDPTVMVAGRPYPYSEV 55 (86)
T ss_dssp ----SSSS--S-EEE-SS-EEEETTEEEEHHHH
T ss_pred cccccccccccccccccCceEEECCEEeehhhc
Confidence 333333333333333344568889999998765
No 66
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=24.38 E-value=6.3e+02 Score=24.63 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=3.0
Q ss_pred ChHHHH
Q 011859 26 SFDALL 31 (476)
Q Consensus 26 ~~~~l~ 31 (476)
.||.+.
T Consensus 28 ~fGk~~ 33 (266)
T cd03404 28 RFGKYS 33 (266)
T ss_pred EcCccc
Confidence 455544
No 67
>PF11002 RDM: RFPL defining motif (RDM); InterPro: IPR022723 The RFPL defining motif (RDM) is a domain found on RFPL (Ret finger protein like) proteins. In humans, RFPL transcripts can be detected at the onset of neurogenesis in differentiating human embryonic stem cells, and in the developing human neocortex []. The RDM domain is thought to have emerged from a neofunctionalisation event. It is found N-terminal to the SPRY domain (PF00622 from PFAM). ; PDB: 2FBE_B.
Probab=24.20 E-value=25 Score=27.13 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=0.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHhccC
Q 011859 20 DPEPDWSFDALLSELNSLETRLNAS 44 (476)
Q Consensus 20 dp~p~w~~~~l~~el~~le~~~~~~ 44 (476)
|-.|+|-+|.|+|=+-.||-+|++.
T Consensus 7 Di~p~~qLg~Lvs~iKelEPqL~~i 31 (42)
T PF11002_consen 7 DIRPNFQLGKLVSKIKELEPQLRAI 31 (42)
T ss_dssp -------------------------
T ss_pred cccHHHHHHHHHHHHHHhCHHHHHH
Confidence 6689999999999999999888764
No 68
>PTZ00491 major vault protein; Provisional
Probab=22.47 E-value=1.4e+03 Score=27.55 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHH
Q 011859 214 DHELKSQIEERKIRSDAAYEEAKR 237 (476)
Q Consensus 214 d~e~~~q~eer~~r~~aA~EEA~R 237 (476)
+.|-+-..|-.|+-+++..|++++
T Consensus 676 eQea~g~Lerqk~~d~~~aE~~r~ 699 (850)
T PTZ00491 676 EQEARGRLERQKMHDKAKAEEQRT 699 (850)
T ss_pred HHHhhchhHHHhhhhHHHHHHHHH
Confidence 444444455555555555555533
No 69
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=22.33 E-value=13 Score=33.28 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 011859 149 VKEEIRNLISTLETQLISENEQ 170 (476)
Q Consensus 149 v~eeir~~~s~le~~~~~E~q~ 170 (476)
|-+-+.+.|+-|+..|++=.-+
T Consensus 65 id~~v~shi~h~e~~~vhv~rk 86 (101)
T PF09026_consen 65 IDDKVQSHILHLEHDLVHVTRK 86 (101)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhhccccceEEeeee
Confidence 3344677777777777664433
No 70
>TIGR03086 conserved hypothetical protein TIGR03086. This family, like Pfam family pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.
Probab=22.21 E-value=65 Score=30.07 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=17.7
Q ss_pred CCCCCChHHHHHHHHHHHHHhc
Q 011859 21 PEPDWSFDALLSELNSLETRLN 42 (476)
Q Consensus 21 p~p~w~~~~l~~el~~le~~~~ 42 (476)
|||+||+.+||.=|-....-+.
T Consensus 25 PcpgWtv~dLv~Hl~~~~~~~~ 46 (180)
T TIGR03086 25 PCAGWDVRALLNHLVGSAEAFA 46 (180)
T ss_pred CCCCccHHHHHHHHHHHHHHHH
Confidence 8999999999998877654443
No 71
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.15 E-value=1.4e+03 Score=26.87 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=7.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 011859 222 EERKIRSDAAYEEAKRKERAL 242 (476)
Q Consensus 222 eer~~r~~aA~EEA~Rke~A~ 242 (476)
++++..-+....|+++.....
T Consensus 533 e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 533 EQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 72
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=21.08 E-value=6.1e+02 Score=26.25 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=10.7
Q ss_pred CCCCcccccccCchhhhhh
Q 011859 112 SDDSDDDVALGGESYLMDE 130 (476)
Q Consensus 112 ~~~~~~~~~~~~~~~lm~~ 130 (476)
++||+++..+-..|..+-|
T Consensus 26 ~SdSEde~~~~lKPVFV~K 44 (276)
T PF06991_consen 26 SSDSEDEEEPLLKPVFVPK 44 (276)
T ss_pred cccccccccccccceeecc
Confidence 4455565556667755444
No 73
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=20.95 E-value=6.5e+02 Score=25.22 Aligned_cols=6 Identities=17% Similarity=0.075 Sum_probs=2.2
Q ss_pred HHHHHH
Q 011859 394 ASELVK 399 (476)
Q Consensus 394 s~ELvq 399 (476)
+.=|.+
T Consensus 225 y~tl~~ 230 (246)
T PF00769_consen 225 YKTLRQ 230 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!