Query 011859
Match_columns 476
No_of_seqs 87 out of 89
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 1.2E-28 4.1E-33 243.0 10.2 139 328-470 4-148 (297)
2 3oja_B Anopheles plasmodium-re 61.5 1.4E+02 0.005 30.3 16.3 25 166-190 470-494 (597)
3 3vkg_A Dynein heavy chain, cyt 52.9 4.3E+02 0.015 34.3 18.6 50 181-235 1908-1957(3245)
4 2b5u_A Colicin E3; high resolu 49.5 1.3E+02 0.0045 32.4 11.7 18 275-292 353-370 (551)
5 3rk6_A Polyadenylate-binding p 43.8 30 0.001 32.6 5.5 85 372-458 19-109 (234)
6 1deq_A Fibrinogen (alpha chain 34.5 99 0.0034 32.1 7.8 63 142-205 118-189 (390)
7 2i1j_A Moesin; FERM, coiled-co 28.3 81 0.0028 33.5 6.2 19 27-45 165-183 (575)
8 3ghg_A Fibrinogen alpha chain; 26.6 1.1E+02 0.0036 33.2 6.6 53 143-196 116-177 (562)
9 2pjh_A Protein NPL4, nuclear p 24.6 38 0.0013 26.9 2.2 32 4-37 5-36 (80)
10 3oja_A Leucine-rich immune mol 24.0 3.6E+02 0.012 26.9 9.7 70 152-221 414-486 (487)
11 2zuo_A MVP, major vault protei 23.4 8.7E+02 0.03 27.7 14.7 28 211-238 678-705 (861)
12 2vso_E Eukaryotic initiation f 22.0 1E+02 0.0034 29.5 5.0 77 367-446 31-108 (284)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=99.95 E-value=1.2e-28 Score=242.95 Aligned_cols=139 Identities=14% Similarity=0.196 Sum_probs=118.6
Q ss_pred ccchhhHhhchHHHHHHHHHHHHHHHHHHhhhhhccCcccchhhhhccccccccccccchHHHHHHHHHHHHHhcCCCC-
Q 011859 328 KKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLC- 406 (476)
Q Consensus 328 ~~~~~~iraa~sAl~~E~~Rlk~LkeL~~~n~~LK~~~nkelkd~rRqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~q~- 406 (476)
+-..++..........++-|......++..|+.+| +.+++|+|+||++|||||+|.+|++.++++|.++|+++.+
T Consensus 4 ~~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK----~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~ 79 (297)
T 3pev_B 4 NFDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVR----NLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGD 79 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHH----HHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHH----HHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCC
Confidence 34455566666666777777666666666666655 4499999999999999999999999999999999998744
Q ss_pred --chHHHHHHHHHHHHhhhcCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhhccccccccccc
Q 011859 407 --PQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVF 470 (476)
Q Consensus 407 --Pq~faLN~fAKKIVsQ~Ete---~p~~AFPLA~Viv~I~sQ~Pe~~DILLAkfHK~CPYtVPk~~~~ 470 (476)
|..|+||+|||+||+|+|++ +|++|||||.|++.||++||+|+|+||||||++|||+||+|+..
T Consensus 80 ~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~~ 148 (297)
T 3pev_B 80 SLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCEI 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCCc
Confidence 33779999999999999995 47899999999999999999999999999999999999999853
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.48 E-value=1.4e+02 Score=30.26 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=11.9
Q ss_pred HHHhhhhHHHHhhHHhHHhHHHHhh
Q 011859 166 SENEQSNSALAQVEKDRDMRREMDR 190 (476)
Q Consensus 166 ~E~q~s~sa~arveK~~e~r~e~~~ 190 (476)
+++...-..+...+.+.+.+++..+
T Consensus 470 ~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 470 NEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3334444455555555555544433
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.87 E-value=4.3e+02 Score=34.29 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=22.5
Q ss_pred hHHhHHHHhhhhcHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhhhHHHHHHH
Q 011859 181 DRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEA 235 (476)
Q Consensus 181 ~~e~r~e~~~~~~~~~qr~~ae~~~~~~~~~qrd~e~~~q~eer~~r~~aA~EEA 235 (476)
|.+.|.++..+ +..+.--|++=..+...=.+++.+..+.+..-+.+.+||
T Consensus 1908 l~~K~~el~~~-----~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A 1908 INEKRDQLEEE-----QLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555443 223333444433344444445555555554444444444
No 4
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=49.49 E-value=1.3e+02 Score=32.42 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011859 275 EKRAAKEAAEREAAENSK 292 (476)
Q Consensus 275 ~rkaa~EAa~k~~ae~~~ 292 (476)
.+|++..|+-+..++..+
T Consensus 353 ~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 353 SRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhHHHHHHH
Confidence 467777777777766543
No 5
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=43.80 E-value=30 Score=32.61 Aligned_cols=85 Identities=11% Similarity=0.202 Sum_probs=58.5
Q ss_pred hhccccccccccccchHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhC---cc-
Q 011859 372 YEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---PQ- 447 (476)
Q Consensus 372 ~rRqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~q~Pq~faLN~fAKKIVsQ~Ete~p~~AFPLA~Viv~I~sQ~---Pe- 447 (476)
+.|+|+-.+|.||.+.+.....+.+|..+++..- ...-.|..+++-|+.++-.+ |.++.-+|.++..|.... |.
T Consensus 19 l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~-~~~~~L~~vi~lIfekAi~e-p~fs~~YA~LC~~l~~~l~~~~~~ 96 (234)
T 3rk6_A 19 LSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCV-TTDDALQELVELIYQQATSI-PNFSYMGARLCNYLSHHLTISPQS 96 (234)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHSS-TTCHHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCCCCch
Confidence 5788888888998666666677777777764221 11346777777777776653 356777888888887644 43
Q ss_pred --HHHHHHHHhhh
Q 011859 448 --VMDILLGEFHR 458 (476)
Q Consensus 448 --~~DILLAkfHK 458 (476)
|..+||.+.+.
T Consensus 97 ~~Fr~lLL~rcQ~ 109 (234)
T 3rk6_A 97 GNFRQLLLQRCRT 109 (234)
T ss_dssp CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 88899887665
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.45 E-value=99 Score=32.11 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=52.5
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhH---------HHHhhhhcHHHHHHHHHHHH
Q 011859 142 THQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMR---------REMDRKNDTVYQRKIAEALD 205 (476)
Q Consensus 142 ~~~h~~~v~eeir~~~s~le~~~~~E~q~s~sa~arveK~~e~r---------~e~~~~~~~~~qr~~ae~~~ 205 (476)
.+.|+.-+|+=|+++|- .-..|++=|..-.+.|-|||...+.- ..+++++|..++-++.+.|+
T Consensus 118 Le~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 36788889999999988 66778888899999999999998764 46899999998888877763
No 7
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.26 E-value=81 Score=33.53 Aligned_cols=19 Identities=0% Similarity=-0.148 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHhccCC
Q 011859 27 FDALLSELNSLETRLNASS 45 (476)
Q Consensus 27 ~~~l~~el~~le~~~~~~~ 45 (476)
.+.+..-+-..=.++.+.+
T Consensus 165 ~e~~~~~I~~~hk~l~G~s 183 (575)
T 2i1j_A 165 REEWEQSITNWWQEHRGML 183 (575)
T ss_dssp HHHHHHHHHHHHGGGTTCC
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 3444444444444454444
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.63 E-value=1.1e+02 Score=33.24 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=43.9
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHH---------HhhhhcHHH
Q 011859 143 HQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRRE---------MDRKNDTVY 196 (476)
Q Consensus 143 ~~h~~~v~eeir~~~s~le~~~~~E~q~s~sa~arveK~~e~r~e---------~~~~~~~~~ 196 (476)
+.|+..++++|-|+|+.| ..|++=|..-.+.|-|||.+.....+ +++++|+++
T Consensus 116 RRrIqyLKekVdnQlsnI-rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~s 177 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKVQHI-QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKD 177 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHH
Confidence 678889999999999666 89999999999999999999988754 455666554
No 9
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=24.58 E-value=38 Score=26.88 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=21.9
Q ss_pred cccccCCCCccCccccCCCCCCChHHHHHHHHHH
Q 011859 4 IKLELRCPQKVDGIAIDPEPDWSFDALLSELNSL 37 (476)
Q Consensus 4 ~~~e~~cp~~~~~~~~dp~p~w~~~~l~~el~~l 37 (476)
+.|-.|+|....=|.+ +|+|||++|...+.+.
T Consensus 5 m~lRvrs~~G~~Ri~v--~~~~t~~~L~~~I~~~ 36 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITA--TKRETAATFLKKVAKE 36 (80)
T ss_dssp CCCEEECSSEEEECCC--CSSCCHHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEc--CCcChHHHHHHHHHHH
Confidence 4566677774333544 5899999999887643
No 10
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.96 E-value=3.6e+02 Score=26.87 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhHHhHHhHHHHhhhhcH---HHHHHHHHHHHhhhhHhhhhHHHHHHH
Q 011859 152 EIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDT---VYQRKIAEALDNHLTAVQRDHELKSQI 221 (476)
Q Consensus 152 eir~~~s~le~~~~~E~q~s~sa~arveK~~e~r~e~~~~~~~---~~qr~~ae~~~~~~~~~qrd~e~~~q~ 221 (476)
.+..+.+.+...+++|..+-..-......-.+.=++.-.|+++ ++.-+|++|..+-..+++|..-+.+|.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
No 11
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=23.44 E-value=8.7e+02 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 011859 211 VQRDHELKSQIEERKIRSDAAYEEAKRK 238 (476)
Q Consensus 211 ~qrd~e~~~q~eer~~r~~aA~EEA~Rk 238 (476)
..++.+-+-.+|-.||.++++.|.+++.
T Consensus 678 ~~~eQea~g~Lerqki~d~a~aE~~r~~ 705 (861)
T 2zuo_A 678 QRLEQEARGRLERQKILDQSEAEKARKE 705 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555666677788888888887665
No 12
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=22.03 E-value=1e+02 Score=29.47 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=45.7
Q ss_pred cchhhhhccccccccccccchHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhC
Q 011859 367 EDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPL-CPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV 445 (476)
Q Consensus 367 kelkd~rRqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~q-~Pq~faLN~fAKKIVsQ~Ete~p~~AFPLA~Viv~I~sQ~ 445 (476)
.+...+.|+|+-.+|.||.. ....++.+|..+..... .+..-.|..+..-|+.++-.+ |.++.-+|.++..|....
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~--nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~e-p~fs~~YA~Lc~~l~~~l 107 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLE--MFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDE-PHWSSMYAQLCGKVVKEL 107 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCST--THHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 34667899999999999765 45666677766643211 111223444444444444332 345666888888887755
Q ss_pred c
Q 011859 446 P 446 (476)
Q Consensus 446 P 446 (476)
|
T Consensus 108 ~ 108 (284)
T 2vso_E 108 N 108 (284)
T ss_dssp C
T ss_pred C
Confidence 4
Done!