Query 011859
Match_columns 476
No_of_seqs 87 out of 89
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 16:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hu3a_ a.118.1.14 (A:) Eukary 33.5 20 0.0015 30.2 4.6 84 368-458 7-100 (243)
2 d1fngb2 d.19.1.1 (B:4-92) Clas 19.3 32 0.0023 26.9 2.8 31 432-462 48-78 (89)
3 d1h2vc1 a.118.1.14 (C:29-290) 16.6 52 0.0038 29.0 4.0 66 388-459 16-83 (262)
4 d2nsfa1 a.213.1.4 (A:1-160) Mi 12.6 59 0.0043 25.4 2.9 22 21-42 40-61 (160)
5 d1n62a2 d.15.4.2 (A:3-81) Carb 9.7 40 0.0029 25.5 0.8 20 13-32 7-28 (79)
6 d1dgja2 d.15.4.2 (A:1-80) Alde 8.8 48 0.0035 25.1 0.9 20 13-32 7-28 (80)
7 d1ip9a_ d.15.2.2 (A:) Bud emer 8.6 87 0.0064 23.3 2.4 31 4-36 13-43 (85)
8 d1ffva2 d.15.4.2 (A:3-81) Carb 8.4 49 0.0036 24.9 0.8 19 14-32 8-28 (79)
9 d1vp7a_ a.7.13.1 (A:) Exonucle 7.1 1.5E+02 0.011 21.6 2.9 23 23-45 4-26 (68)
10 d2i0za2 e.74.1.1 (A:193-361) F 6.7 94 0.0069 25.1 1.9 23 16-38 77-99 (169)
No 1
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.53 E-value=20 Score=30.23 Aligned_cols=84 Identities=5% Similarity=0.042 Sum_probs=52.9
Q ss_pred chhhhhccccccccccccchHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCc-
Q 011859 368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP- 446 (476)
Q Consensus 368 elkd~rRqInk~VGQIS~Sk~Qvr~ks~ELvqLL~~~q~Pq~faLN~fAKKIVsQ~Ete~p~~AFPLA~Viv~I~sQ~P- 446 (476)
+...+.|+|+-.+|.||.+ ++..+..+|.++.. ..+ -.+..++.-|+..+-.+ |.++..+|.++..|...+|
T Consensus 7 ~~~~l~r~v~~lLNKLt~~--n~~~i~~ei~~l~~--~~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~ 79 (243)
T d1hu3a_ 7 KTQELFRKVRSILNKLTPQ--MFNQLMKQVSGLTV--DTE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVP 79 (243)
T ss_dssp HHHHHHHHHHHHHTCSSCC--CHHHHHHHHTTCCC--CSH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHc--cCH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCc
Confidence 3456788899999999754 44555556655422 233 23445555555554433 3567778888888888776
Q ss_pred ---------cHHHHHHHHhhh
Q 011859 447 ---------QVMDILLGEFHR 458 (476)
Q Consensus 447 ---------e~~DILLAkfHK 458 (476)
.|+..||...+.
T Consensus 80 ~~~~~~~~~~F~~~Ll~~~q~ 100 (243)
T d1hu3a_ 80 MADKPGNTVNFRKLLLNRCQK 100 (243)
T ss_dssp ---------CHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHH
Confidence 467777777654
No 2
>d1fngb2 d.19.1.1 (B:4-92) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-EK [TaxId: 10090]}
Probab=19.33 E-value=32 Score=26.88 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhhCccHHHHHHHHhhhhccc
Q 011859 432 MSCGYVIVLVASQVPQVMDILLGEFHRACIY 462 (476)
Q Consensus 432 FPLA~Viv~I~sQ~Pe~~DILLAkfHK~CPY 462 (476)
.++|...+..|+..|++++-.-|..-..|=+
T Consensus 48 TelG~~~Ae~wNsq~~~Le~~Ra~vd~~Crh 78 (89)
T d1fngb2 48 TELGRPDAENWNSQPEFLEQKRAEVDTVCRH 78 (89)
T ss_dssp SGGGHHHHHHHHTCHHHHHHHHHHHHHTHHH
T ss_pred CCcccccHhHhcCCHHHHHHHHhccCccccC
Confidence 6899999999999999999999999999943
No 3
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.57 E-value=52 Score=29.01 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCccHHHHHHHHhhhh
Q 011859 388 DNVRTKASELVKILNNPLCPQ--SISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRA 459 (476)
Q Consensus 388 ~Qvr~ks~ELvqLL~~~q~Pq--~faLN~fAKKIVsQ~Ete~p~~AFPLA~Viv~I~sQ~Pe~~DILLAkfHK~ 459 (476)
.++......|..++... .+. .-++.+|...++.| |...--+|.+++.+-+.+|+||..++.++++.
T Consensus 16 ~s~~~~ie~L~~~l~~~-l~~~~~~il~~l~~~~~~~-----P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~ 83 (262)
T d1h2vc1 16 CSLESNLEGLAGVLEAD-LPNYKSKILRLLCTVARLL-----PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQ 83 (262)
T ss_dssp SCHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 34455555555555422 111 22444444444333 22233388899888999999999999888753
No 4
>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=12.57 E-value=59 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCCChHHHHHHHHHHHHHhc
Q 011859 21 PEPDWSFDALLSELNSLETRLN 42 (476)
Q Consensus 21 p~p~w~~~~l~~el~~le~~~~ 42 (476)
|+|.||..+||.=|...+..+.
T Consensus 40 ~c~gWtvrdlv~Hl~~~~~~~~ 61 (160)
T d2nsfa1 40 LLEGWTRSHLIAHVAYNAIALC 61 (160)
T ss_dssp SSTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999999998876665443
No 5
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=9.73 E-value=40 Score=25.47 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=15.9
Q ss_pred ccCc--cccCCCCCCChHHHHH
Q 011859 13 KVDG--IAIDPEPDWSFDALLS 32 (476)
Q Consensus 13 ~~~~--~~~dp~p~w~~~~l~~ 32 (476)
.+|| +.+|++|+|++-++|.
T Consensus 7 ~lNG~~~~~~v~p~~~Ll~~LR 28 (79)
T d1n62a2 7 TINGHPVEALVEPRTLLIHFIR 28 (79)
T ss_dssp EETTEEEEEEECTTCBHHHHHH
T ss_pred EECCEEEEEecCCCCcHHHHHh
Confidence 3566 6778999999988875
No 6
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=8.84 E-value=48 Score=25.10 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.3
Q ss_pred ccCc--cccCCCCCCChHHHHH
Q 011859 13 KVDG--IAIDPEPDWSFDALLS 32 (476)
Q Consensus 13 ~~~~--~~~dp~p~w~~~~l~~ 32 (476)
.+|| +.+|.+|+|++-++|.
T Consensus 7 ~vNG~~~~~~v~p~~~Ll~~LR 28 (80)
T d1dgja2 7 IVNGMARRLLVSPNDLLVDVLR 28 (80)
T ss_dssp EETTBCCEEEECTTCBHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHh
Confidence 3677 7788999999988875
No 7
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.57 E-value=87 Score=23.26 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=19.1
Q ss_pred cccccCCCCccCccccCCCCCCChHHHHHHHHH
Q 011859 4 IKLELRCPQKVDGIAIDPEPDWSFDALLSELNS 36 (476)
Q Consensus 4 ~~~e~~cp~~~~~~~~dp~p~w~~~~l~~el~~ 36 (476)
|++-...-..+--|.+ .|+|+|.+|..++..
T Consensus 13 ikVKv~~~~D~~~~~l--~~~it~~dL~~kI~~ 43 (85)
T d1ip9a_ 13 TKIKFYYKDDIFALML--KGDTTYKELRSKIAP 43 (85)
T ss_dssp EEEEECBTTCCEEEEE--CSCCCHHHHHHHHHH
T ss_pred EEEEEEECCcEEEEEe--CCCCCHHHHHHHHHH
Confidence 3443333333334566 479999999988754
No 8
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=8.37 E-value=49 Score=24.95 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.5
Q ss_pred cCc--cccCCCCCCChHHHHH
Q 011859 14 VDG--IAIDPEPDWSFDALLS 32 (476)
Q Consensus 14 ~~~--~~~dp~p~w~~~~l~~ 32 (476)
+|| +.+|..|+|++-++|.
T Consensus 8 vNG~~~~~~v~~~~~Ll~~LR 28 (79)
T d1ffva2 8 VNGKAQEKAVEPRTLLIHFLR 28 (79)
T ss_dssp ETTEEEEEEECTTCBHHHHHH
T ss_pred ECCEEEEEeCCCCCCHHHHHh
Confidence 566 6788999999988875
No 9
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=7.07 E-value=1.5e+02 Score=21.58 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHHHHHhccCC
Q 011859 23 PDWSFDALLSELNSLETRLNASS 45 (476)
Q Consensus 23 p~w~~~~l~~el~~le~~~~~~~ 45 (476)
|.+||++.+.+|+.+=.+|-+..
T Consensus 4 ~p~sfEe~l~~LE~IV~~LE~g~ 26 (68)
T d1vp7a_ 4 LPQDFETALAELESLVSAMENGT 26 (68)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC
Confidence 34699999999999999997765
No 10
>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}
Probab=6.71 E-value=94 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.1
Q ss_pred ccccCCCCCCChHHHHHHHHHHH
Q 011859 16 GIAIDPEPDWSFDALLSELNSLE 38 (476)
Q Consensus 16 ~~~~dp~p~w~~~~l~~el~~le 38 (476)
-|.||+-|+|+.+++...+...-
T Consensus 77 ~l~id~~P~~~~~~l~~~l~~~~ 99 (169)
T d2i0za2 77 QMSIDALPEENSEQLFQRMLKQM 99 (169)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCcccHHHHHHHHHHHH
Confidence 37899999999999888776554
Done!