Query 011861
Match_columns 476
No_of_seqs 426 out of 4058
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10787 DNA-binding ATP-depen 99.9 1.3E-25 2.8E-30 244.0 16.3 174 288-475 10-191 (784)
2 COG0466 Lon ATP-dependent Lon 99.9 1.6E-24 3.4E-29 222.7 14.5 175 288-475 9-192 (782)
3 PF02190 LON: ATP-dependent pr 99.9 9.5E-25 2.1E-29 203.0 10.0 178 288-475 1-194 (205)
4 TIGR00763 lon ATP-dependent pr 99.9 5.1E-24 1.1E-28 233.8 15.9 174 290-475 1-189 (775)
5 COG2802 Uncharacterized protei 99.9 9.3E-23 2E-27 183.0 16.0 174 287-474 10-194 (221)
6 KOG4159 Predicted E3 ubiquitin 99.9 2.3E-22 5E-27 199.0 13.5 276 193-474 75-370 (398)
7 KOG0553 TPR repeat-containing 99.8 8E-21 1.7E-25 177.7 11.5 125 42-189 76-200 (304)
8 KOG0548 Molecular co-chaperone 99.7 3.9E-16 8.5E-21 155.9 11.7 117 46-185 357-473 (539)
9 KOG4642 Chaperone-dependent E3 99.6 1.7E-15 3.6E-20 137.1 10.6 204 41-269 4-277 (284)
10 KOG0548 Molecular co-chaperone 99.6 1.6E-15 3.4E-20 151.6 10.4 113 47-182 2-114 (539)
11 KOG4234 TPR repeat-containing 99.6 6.4E-15 1.4E-19 130.0 10.7 123 44-189 92-219 (271)
12 KOG0543 FKBP-type peptidyl-pro 99.6 1.3E-14 2.8E-19 141.6 11.4 126 42-190 203-343 (397)
13 KOG4648 Uncharacterized conser 99.6 8.3E-15 1.8E-19 138.8 9.7 121 42-185 92-212 (536)
14 KOG0547 Translocase of outer m 99.6 1.9E-14 4.1E-19 142.0 11.7 127 37-186 105-232 (606)
15 PLN03088 SGT1, suppressor of 99.5 3.2E-14 6.9E-19 143.2 10.6 119 47-188 2-120 (356)
16 PRK15359 type III secretion sy 99.5 1.5E-13 3.3E-18 120.2 11.6 116 49-187 26-141 (144)
17 KOG0550 Molecular chaperone (D 99.4 8.5E-13 1.8E-17 128.2 9.1 125 42-190 244-372 (486)
18 KOG0376 Serine-threonine phosp 99.4 7.2E-13 1.6E-17 131.8 8.8 121 46-189 3-123 (476)
19 TIGR02552 LcrH_SycD type III s 99.4 3.5E-12 7.5E-17 110.1 11.7 118 46-186 16-133 (135)
20 PRK15363 pathogenicity island 99.3 9.7E-12 2.1E-16 107.8 11.2 121 45-188 33-153 (157)
21 PRK10370 formate-dependent nit 99.3 1.9E-11 4E-16 112.8 10.4 115 44-181 70-187 (198)
22 PRK11189 lipoprotein NlpI; Pro 99.3 1.8E-11 3.9E-16 120.4 9.2 106 45-173 62-167 (296)
23 KOG0551 Hsp90 co-chaperone CNS 99.2 6.5E-11 1.4E-15 112.4 9.8 107 45-174 79-189 (390)
24 TIGR00990 3a0801s09 mitochondr 99.2 7.8E-11 1.7E-15 127.7 11.8 106 44-173 124-229 (615)
25 KOG4626 O-linked N-acetylgluco 99.2 8E-11 1.7E-15 119.5 9.5 108 48-178 389-496 (966)
26 KOG4626 O-linked N-acetylgluco 99.2 4.1E-11 8.9E-16 121.6 6.9 115 47-184 252-366 (966)
27 KOG0624 dsRNA-activated protei 99.1 2E-10 4.3E-15 109.5 8.4 116 43-181 34-149 (504)
28 PF13414 TPR_11: TPR repeat; P 99.1 1.1E-10 2.4E-15 88.4 5.1 67 46-135 2-69 (69)
29 COG3063 PilF Tfp pilus assembl 99.1 5.1E-10 1.1E-14 101.7 9.7 108 41-172 29-136 (250)
30 smart00504 Ubox Modified RING 99.1 1.2E-10 2.5E-15 86.6 4.7 63 202-266 1-63 (63)
31 TIGR02795 tol_pal_ybgF tol-pal 99.1 4.9E-10 1.1E-14 93.8 9.1 109 47-178 2-116 (119)
32 PF04564 U-box: U-box domain; 99.1 1.1E-10 2.4E-15 89.2 3.8 68 200-269 2-70 (73)
33 cd00189 TPR Tetratricopeptide 99.0 1.9E-09 4.2E-14 84.6 10.4 99 49-170 2-100 (100)
34 KOG1126 DNA-binding cell divis 99.0 4.2E-10 9E-15 115.7 8.0 118 47-187 421-538 (638)
35 PF15227 zf-C3HC4_4: zinc fing 99.0 2E-10 4.3E-15 77.4 3.0 38 205-242 1-42 (42)
36 PF13414 TPR_11: TPR repeat; P 99.0 4.1E-10 8.9E-15 85.2 4.8 67 80-169 2-69 (69)
37 TIGR00990 3a0801s09 mitochondr 99.0 1.5E-09 3.2E-14 117.8 10.6 114 45-181 329-442 (615)
38 KOG1308 Hsp70-interacting prot 99.0 2.3E-10 5.1E-15 109.3 3.0 119 39-181 106-224 (377)
39 KOG0547 Translocase of outer m 99.0 1.6E-09 3.5E-14 107.6 8.8 109 42-173 321-429 (606)
40 KOG0545 Aryl-hydrocarbon recep 99.0 4.6E-09 9.9E-14 96.0 11.0 122 42-186 173-313 (329)
41 PF12895 Apc3: Anaphase-promot 98.9 7.4E-10 1.6E-14 87.4 4.5 82 59-164 1-84 (84)
42 PRK09782 bacteriophage N4 rece 98.9 5.2E-09 1.1E-13 117.3 10.7 113 47-182 609-721 (987)
43 TIGR03302 OM_YfiO outer membra 98.9 8.9E-09 1.9E-13 97.6 10.4 117 42-181 28-158 (235)
44 PRK02603 photosystem I assembl 98.9 6.8E-09 1.5E-13 93.7 9.0 107 42-171 30-153 (172)
45 PRK12370 invasion protein regu 98.9 6.7E-09 1.5E-13 111.1 10.0 93 60-175 317-409 (553)
46 KOG1126 DNA-binding cell divis 98.9 3.9E-09 8.4E-14 108.7 7.4 121 44-187 486-606 (638)
47 KOG1125 TPR repeat-containing 98.9 1.5E-09 3.3E-14 110.0 4.3 95 53-170 436-530 (579)
48 PRK15331 chaperone protein Sic 98.9 1.8E-08 3.9E-13 87.9 10.4 112 46-181 36-147 (165)
49 PRK12370 invasion protein regu 98.9 7.3E-09 1.6E-13 110.8 9.5 113 46-181 337-450 (553)
50 COG5010 TadD Flp pilus assembl 98.8 1.7E-08 3.7E-13 93.7 10.3 114 49-185 102-215 (257)
51 KOG1155 Anaphase-promoting com 98.8 1.7E-08 3.7E-13 99.9 10.9 119 48-189 365-483 (559)
52 KOG4555 TPR repeat-containing 98.8 2.2E-08 4.7E-13 83.0 9.3 108 40-170 36-147 (175)
53 PRK15359 type III secretion sy 98.8 1.3E-08 2.8E-13 89.0 8.7 85 45-152 56-140 (144)
54 COG4235 Cytochrome c biogenesi 98.8 3.7E-08 8E-13 93.7 11.4 117 44-181 153-270 (287)
55 TIGR00599 rad18 DNA repair pro 98.8 3.8E-09 8.2E-14 105.4 4.9 68 197-266 21-88 (397)
56 PF13432 TPR_16: Tetratricopep 98.8 7.7E-09 1.7E-13 77.2 5.0 64 52-138 2-65 (65)
57 KOG1155 Anaphase-promoting com 98.8 1.9E-08 4.1E-13 99.6 9.0 111 54-187 337-447 (559)
58 TIGR02521 type_IV_pilW type IV 98.8 4.4E-08 9.6E-13 91.1 10.8 103 43-168 27-129 (234)
59 PRK15179 Vi polysaccharide bio 98.8 2.7E-08 5.9E-13 107.6 10.5 114 47-183 86-199 (694)
60 KOG0823 Predicted E3 ubiquitin 98.8 3.3E-09 7.1E-14 96.1 2.7 49 199-247 44-95 (230)
61 CHL00033 ycf3 photosystem I as 98.8 3.5E-08 7.6E-13 88.6 9.2 108 42-172 30-154 (168)
62 PLN03208 E3 ubiquitin-protein 98.8 5.4E-09 1.2E-13 93.1 3.7 49 199-247 15-79 (193)
63 PRK10370 formate-dependent nit 98.8 2.2E-08 4.7E-13 92.4 7.9 99 60-181 52-153 (198)
64 KOG0287 Postreplication repair 98.8 3.5E-09 7.6E-14 99.9 2.5 66 199-266 20-85 (442)
65 PRK10803 tol-pal system protei 98.7 3.6E-08 7.9E-13 94.6 9.3 112 47-181 142-260 (263)
66 smart00464 LON Found in ATP-de 98.7 1.5E-08 3.2E-13 81.4 5.5 44 289-332 2-49 (92)
67 KOG0624 dsRNA-activated protei 98.7 5.8E-08 1.2E-12 92.9 10.2 125 43-190 265-393 (504)
68 PF13432 TPR_16: Tetratricopep 98.7 1.4E-08 2.9E-13 75.8 4.6 64 86-172 2-65 (65)
69 PF13923 zf-C3HC4_2: Zinc fing 98.7 8.2E-09 1.8E-13 68.6 2.8 38 205-242 1-39 (39)
70 PLN02789 farnesyltranstransfer 98.7 6.4E-08 1.4E-12 95.7 10.3 61 121-181 125-185 (320)
71 PF06552 TOM20_plant: Plant sp 98.7 2.4E-08 5.2E-13 88.0 6.3 113 62-187 6-129 (186)
72 PRK09782 bacteriophage N4 rece 98.7 4.3E-08 9.2E-13 110.1 9.9 106 56-185 585-690 (987)
73 KOG0317 Predicted E3 ubiquitin 98.7 8.5E-09 1.8E-13 96.2 3.4 50 199-248 236-285 (293)
74 TIGR02521 type_IV_pilW type IV 98.7 8.7E-08 1.9E-12 89.1 10.4 112 47-181 65-178 (234)
75 PRK15174 Vi polysaccharide exp 98.7 6.1E-08 1.3E-12 105.6 9.4 99 54-175 219-321 (656)
76 TIGR02552 LcrH_SycD type III s 98.6 1E-07 2.3E-12 81.9 8.0 93 68-183 4-96 (135)
77 PF13371 TPR_9: Tetratricopept 98.6 1.1E-07 2.4E-12 72.5 7.1 70 54-146 2-71 (73)
78 PRK15174 Vi polysaccharide exp 98.6 1.1E-07 2.3E-12 103.7 9.6 105 47-174 246-354 (656)
79 COG3063 PilF Tfp pilus assembl 98.6 1.9E-07 4E-12 85.2 9.3 112 47-181 69-182 (250)
80 PF13429 TPR_15: Tetratricopep 98.6 5E-08 1.1E-12 95.1 6.1 116 47-185 146-261 (280)
81 PRK11189 lipoprotein NlpI; Pro 98.6 8.4E-08 1.8E-12 94.4 7.5 98 61-181 40-141 (296)
82 COG5152 Uncharacterized conser 98.6 1.6E-08 3.6E-13 88.4 2.0 120 129-264 135-255 (259)
83 PF13512 TPR_18: Tetratricopep 98.6 3.1E-07 6.6E-12 78.6 9.7 107 47-176 10-137 (142)
84 PF13639 zf-RING_2: Ring finge 98.6 2E-08 4.2E-13 68.7 1.9 40 204-243 2-44 (44)
85 PF13920 zf-C3HC4_3: Zinc fing 98.6 3.3E-08 7.1E-13 69.6 3.0 45 202-246 2-47 (50)
86 PF14835 zf-RING_6: zf-RING of 98.6 2.4E-08 5.3E-13 71.7 2.0 59 201-263 6-65 (65)
87 PHA02929 N1R/p28-like protein; 98.6 3.4E-08 7.4E-13 92.0 3.6 48 200-247 172-227 (238)
88 KOG0550 Molecular chaperone (D 98.6 1.2E-07 2.6E-12 92.9 7.2 107 33-162 35-141 (486)
89 TIGR03302 OM_YfiO outer membra 98.6 6.1E-07 1.3E-11 85.0 11.8 103 48-173 71-201 (235)
90 PLN02789 farnesyltranstransfer 98.6 3.5E-07 7.5E-12 90.5 10.2 119 43-186 35-156 (320)
91 PF14559 TPR_19: Tetratricopep 98.6 9.5E-08 2E-12 71.8 4.8 68 57-147 1-68 (68)
92 PRK11788 tetratricopeptide rep 98.5 4.3E-07 9.4E-12 92.6 10.9 105 47-174 180-285 (389)
93 COG5432 RAD18 RING-finger-cont 98.5 4.9E-08 1.1E-12 90.4 3.2 47 200-246 23-69 (391)
94 KOG1173 Anaphase-promoting com 98.5 5.1E-07 1.1E-11 91.7 10.5 76 83-181 457-532 (611)
95 PRK10049 pgaA outer membrane p 98.5 3.4E-07 7.4E-12 101.7 10.2 112 47-181 359-470 (765)
96 KOG0320 Predicted E3 ubiquitin 98.5 5.2E-08 1.1E-12 84.5 2.7 49 199-247 128-178 (187)
97 KOG2076 RNA polymerase III tra 98.5 9.4E-07 2E-11 94.1 12.2 125 45-169 137-272 (895)
98 COG4783 Putative Zn-dependent 98.5 5.5E-07 1.2E-11 90.3 9.9 118 47-187 306-423 (484)
99 PRK15179 Vi polysaccharide bio 98.5 5.6E-07 1.2E-11 97.5 10.7 103 45-170 118-220 (694)
100 PF00097 zf-C3HC4: Zinc finger 98.5 8.8E-08 1.9E-12 64.4 2.9 38 205-242 1-41 (41)
101 PRK11447 cellulose synthase su 98.5 4.2E-07 9.1E-12 105.5 10.2 125 52-180 274-427 (1157)
102 PRK10049 pgaA outer membrane p 98.5 4.2E-07 9.1E-12 101.0 9.7 112 46-181 48-159 (765)
103 PF13371 TPR_9: Tetratricopept 98.5 2.3E-07 4.9E-12 70.8 5.3 70 88-180 2-71 (73)
104 KOG4162 Predicted calmodulin-b 98.5 4.4E-07 9.6E-12 95.1 8.9 105 47-174 684-790 (799)
105 KOG1310 WD40 repeat protein [G 98.5 3.3E-07 7.2E-12 92.1 7.6 126 41-186 368-493 (758)
106 TIGR02917 PEP_TPR_lipo putativ 98.5 6.5E-07 1.4E-11 100.2 10.8 112 44-178 122-233 (899)
107 KOG2004 Mitochondrial ATP-depe 98.4 1.8E-06 4E-11 90.2 12.3 176 288-474 68-278 (906)
108 PRK10153 DNA-binding transcrip 98.4 1.2E-06 2.5E-11 92.3 10.3 127 46-173 338-488 (517)
109 PF13525 YfiO: Outer membrane 98.4 2.1E-06 4.5E-11 79.6 10.6 114 46-182 4-134 (203)
110 PF14559 TPR_19: Tetratricopep 98.4 9.4E-07 2E-11 66.3 6.0 60 121-180 8-67 (68)
111 PRK11447 cellulose synthase su 98.4 1.3E-06 2.8E-11 101.5 10.0 102 49-173 605-706 (1157)
112 COG4783 Putative Zn-dependent 98.3 1.9E-06 4.2E-11 86.5 9.6 118 45-185 338-455 (484)
113 PRK10866 outer membrane biogen 98.3 2.8E-06 6E-11 80.9 10.4 114 45-181 30-167 (243)
114 PHA02926 zinc finger-like prot 98.3 2.2E-07 4.8E-12 83.6 2.6 47 200-246 168-229 (242)
115 PRK11788 tetratricopeptide rep 98.3 2.2E-06 4.8E-11 87.3 10.3 108 48-178 108-220 (389)
116 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.3E-06 2.7E-11 88.1 8.0 72 40-134 68-142 (453)
117 PLN03088 SGT1, suppressor of 98.3 1.6E-06 3.4E-11 87.5 8.7 84 46-152 35-118 (356)
118 PF13445 zf-RING_UBOX: RING-ty 98.3 3.1E-07 6.8E-12 61.8 2.2 30 205-235 1-34 (43)
119 PF09976 TPR_21: Tetratricopep 98.3 2.4E-06 5.2E-11 74.7 8.2 95 47-165 48-145 (145)
120 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 5.9E-07 1.3E-11 90.4 4.8 69 76-167 70-141 (453)
121 cd00162 RING RING-finger (Real 98.3 4.8E-07 1E-11 61.7 3.0 42 204-245 1-44 (45)
122 KOG0553 TPR repeat-containing 98.3 1.1E-06 2.5E-11 83.2 6.1 86 47-155 115-200 (304)
123 TIGR02917 PEP_TPR_lipo putativ 98.3 2.5E-06 5.5E-11 95.5 10.1 107 50-179 570-676 (899)
124 COG5010 TadD Flp pilus assembl 98.3 2.3E-06 5E-11 79.7 7.6 107 51-180 70-176 (257)
125 PF14634 zf-RING_5: zinc-RING 98.3 6.1E-07 1.3E-11 61.2 2.9 41 204-244 1-44 (44)
126 KOG2003 TPR repeat-containing 98.3 1.4E-06 3.1E-11 86.1 6.5 114 45-181 488-601 (840)
127 COG4785 NlpI Lipoprotein NlpI, 98.3 1.5E-06 3.2E-11 78.5 5.9 110 44-176 62-171 (297)
128 PF13429 TPR_15: Tetratricopep 98.3 1.8E-06 3.8E-11 84.2 6.8 117 46-185 109-227 (280)
129 PRK11906 transcriptional regul 98.2 7E-06 1.5E-10 82.9 10.8 118 49-180 257-380 (458)
130 PF12688 TPR_5: Tetratrico pep 98.2 5.4E-06 1.2E-10 69.6 8.3 96 48-166 2-103 (120)
131 KOG2164 Predicted E3 ubiquitin 98.2 1.3E-06 2.8E-11 88.0 5.3 47 202-248 186-237 (513)
132 PRK14574 hmsH outer membrane p 98.2 4.6E-06 1E-10 92.1 9.9 109 46-177 33-141 (822)
133 KOG1174 Anaphase-promoting com 98.2 2.5E-06 5.3E-11 83.8 6.3 145 42-186 329-519 (564)
134 COG1729 Uncharacterized protei 98.2 9.3E-06 2E-10 76.6 9.7 113 46-181 140-258 (262)
135 COG5574 PEX10 RING-finger-cont 98.2 8.6E-07 1.9E-11 81.9 2.1 49 200-248 213-263 (271)
136 PRK11906 transcriptional regul 98.1 4.6E-06 1E-10 84.2 7.4 92 60-174 317-408 (458)
137 KOG0543 FKBP-type peptidyl-pro 98.1 1.5E-05 3.2E-10 78.8 10.5 97 50-169 260-357 (397)
138 KOG1125 TPR repeat-containing 98.1 6.6E-06 1.4E-10 84.0 8.4 135 42-176 314-468 (579)
139 KOG2660 Locus-specific chromos 98.1 1.4E-06 3.1E-11 83.0 2.6 73 199-271 12-87 (331)
140 smart00184 RING Ring finger. E 98.1 2.6E-06 5.7E-11 55.9 3.0 38 205-242 1-39 (39)
141 PF12678 zf-rbx1: RING-H2 zinc 98.1 2.8E-06 6.1E-11 64.8 3.5 41 203-243 20-73 (73)
142 PRK14574 hmsH outer membrane p 98.1 1.2E-05 2.7E-10 88.8 9.8 107 47-177 102-208 (822)
143 cd05804 StaR_like StaR_like; a 98.1 1.3E-05 2.8E-10 80.7 9.0 104 44-170 111-218 (355)
144 KOG1128 Uncharacterized conser 98.1 1.2E-05 2.5E-10 84.3 8.6 108 49-179 487-594 (777)
145 cd05804 StaR_like StaR_like; a 98.1 1.6E-05 3.4E-10 80.1 9.4 124 47-171 43-181 (355)
146 PRK15363 pathogenicity island 98.1 1.1E-05 2.4E-10 70.3 6.9 88 74-184 27-115 (157)
147 KOG1813 Predicted E3 ubiquitin 98.0 2.1E-06 4.6E-11 80.4 2.2 104 131-247 182-286 (313)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 2.2E-05 4.7E-10 79.5 9.0 93 52-167 205-297 (395)
149 CHL00033 ycf3 photosystem I as 98.0 9.9E-06 2.1E-10 72.6 5.8 108 53-183 5-117 (168)
150 KOG2002 TPR-containing nuclear 98.0 4.6E-05 1E-09 82.1 11.6 114 44-180 304-422 (1018)
151 cd00189 TPR Tetratricopeptide 98.0 3.7E-05 7.9E-10 59.6 8.2 76 83-181 2-77 (100)
152 KOG0311 Predicted E3 ubiquitin 98.0 1.6E-06 3.5E-11 83.1 0.4 69 200-269 41-111 (381)
153 KOG2177 Predicted E3 ubiquitin 98.0 4.3E-06 9.3E-11 82.7 3.3 64 199-266 10-73 (386)
154 KOG3060 Uncharacterized conser 97.9 5.9E-05 1.3E-09 70.0 9.6 109 50-181 89-197 (289)
155 KOG2076 RNA polymerase III tra 97.9 6.9E-05 1.5E-09 80.3 11.2 110 48-181 208-322 (895)
156 KOG0546 HSP90 co-chaperone CPR 97.9 2E-05 4.3E-10 76.3 6.4 123 45-190 220-361 (372)
157 COG5243 HRD1 HRD ubiquitin lig 97.9 6.3E-06 1.4E-10 79.2 2.6 48 199-246 284-344 (491)
158 KOG2002 TPR-containing nuclear 97.9 7.3E-05 1.6E-09 80.7 10.6 113 55-190 654-768 (1018)
159 PF13424 TPR_12: Tetratricopep 97.9 5.3E-06 1.2E-10 64.1 1.6 65 80-167 4-75 (78)
160 KOG1156 N-terminal acetyltrans 97.9 5.8E-05 1.3E-09 78.2 9.0 117 48-187 8-124 (700)
161 PF13431 TPR_17: Tetratricopep 97.8 1.2E-05 2.6E-10 51.5 2.6 32 127-158 2-33 (34)
162 TIGR00540 hemY_coli hemY prote 97.8 0.0001 2.3E-09 75.9 11.0 121 43-186 80-201 (409)
163 KOG3060 Uncharacterized conser 97.8 0.00013 2.8E-09 67.8 10.2 110 56-188 129-241 (289)
164 TIGR00570 cdk7 CDK-activating 97.8 1.6E-05 3.5E-10 76.5 4.0 47 201-247 2-54 (309)
165 PRK14720 transcript cleavage f 97.8 7.2E-05 1.6E-09 82.3 9.2 128 45-178 29-156 (906)
166 KOG1941 Acetylcholine receptor 97.8 3.9E-05 8.5E-10 74.4 6.3 198 48-245 123-414 (518)
167 KOG4234 TPR repeat-containing 97.8 0.00012 2.5E-09 65.7 8.2 70 47-139 134-203 (271)
168 TIGR00540 hemY_coli hemY prote 97.7 0.00012 2.6E-09 75.5 9.5 114 45-182 261-380 (409)
169 KOG4162 Predicted calmodulin-b 97.7 0.00011 2.3E-09 77.6 9.0 119 48-189 651-771 (799)
170 KOG1127 TPR repeat-containing 97.7 5.1E-05 1.1E-09 81.9 6.6 133 49-182 494-640 (1238)
171 KOG1127 TPR repeat-containing 97.7 3.2E-05 6.9E-10 83.4 4.8 110 48-180 563-672 (1238)
172 KOG1129 TPR repeat-containing 97.7 7.5E-05 1.6E-09 71.6 6.8 101 45-168 288-388 (478)
173 KOG4628 Predicted E3 ubiquitin 97.7 2.7E-05 5.9E-10 76.1 3.9 45 203-247 230-278 (348)
174 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0001 2.2E-09 61.2 6.9 70 81-173 2-74 (119)
175 PRK02603 photosystem I assembl 97.7 4.7E-05 1E-09 68.6 4.9 82 77-181 31-115 (172)
176 PF09976 TPR_21: Tetratricopep 97.7 0.00045 9.9E-09 60.2 10.5 97 44-163 8-110 (145)
177 PF13424 TPR_12: Tetratricopep 97.7 4.2E-05 9.1E-10 59.0 3.4 66 46-134 4-76 (78)
178 PRK10747 putative protoheme IX 97.6 0.00034 7.3E-09 71.9 11.0 119 43-185 80-200 (398)
179 COG4235 Cytochrome c biogenesi 97.6 0.00017 3.7E-09 68.9 8.1 98 60-180 135-235 (287)
180 KOG0978 E3 ubiquitin ligase in 97.6 2.7E-05 5.8E-10 82.4 2.9 48 200-247 641-689 (698)
181 KOG1174 Anaphase-promoting com 97.6 0.00015 3.3E-09 71.5 7.8 129 46-178 231-374 (564)
182 COG3118 Thioredoxin domain-con 97.6 0.00018 3.9E-09 68.5 7.9 168 5-172 89-270 (304)
183 PRK10747 putative protoheme IX 97.6 0.00031 6.8E-09 72.1 10.2 101 50-173 121-222 (398)
184 COG4105 ComL DNA uptake lipopr 97.6 0.00059 1.3E-08 64.0 10.8 116 45-183 32-161 (254)
185 KOG1173 Anaphase-promoting com 97.5 0.00028 6E-09 72.3 8.2 109 46-177 311-419 (611)
186 PF00515 TPR_1: Tetratricopept 97.5 6E-05 1.3E-09 48.1 2.1 34 138-171 1-34 (34)
187 PF12861 zf-Apc11: Anaphase-pr 97.5 8.1E-05 1.8E-09 57.4 3.0 30 218-247 50-82 (85)
188 KOG0802 E3 ubiquitin ligase [P 97.5 3.8E-05 8.3E-10 81.7 1.6 49 199-247 288-341 (543)
189 KOG1156 N-terminal acetyltrans 97.5 0.00055 1.2E-08 71.2 9.5 110 46-178 40-149 (700)
190 KOG2003 TPR repeat-containing 97.5 0.0007 1.5E-08 67.5 9.8 133 45-178 556-700 (840)
191 KOG1840 Kinesin light chain [C 97.5 0.00019 4.2E-09 74.7 6.1 102 44-168 196-313 (508)
192 KOG0495 HAT repeat protein [RN 97.4 0.0016 3.4E-08 67.9 12.0 139 52-190 589-737 (913)
193 KOG0824 Predicted E3 ubiquitin 97.4 6.5E-05 1.4E-09 70.8 1.9 48 200-247 5-53 (324)
194 PF04781 DUF627: Protein of un 97.4 0.00082 1.8E-08 54.8 8.0 104 53-168 2-108 (111)
195 PF07719 TPR_2: Tetratricopept 97.4 0.00014 3.1E-09 46.1 2.8 34 138-171 1-34 (34)
196 KOG2879 Predicted E3 ubiquitin 97.4 0.00021 4.6E-09 66.5 4.9 52 195-246 232-286 (298)
197 COG5540 RING-finger-containing 97.4 9.8E-05 2.1E-09 69.5 2.7 45 203-247 324-372 (374)
198 PF12895 Apc3: Anaphase-promot 97.4 0.00012 2.5E-09 57.5 2.7 61 46-130 24-84 (84)
199 PF00515 TPR_1: Tetratricopept 97.4 0.00023 5E-09 45.3 3.4 34 47-80 1-34 (34)
200 COG4700 Uncharacterized protei 97.4 0.0011 2.5E-08 58.9 8.8 104 48-174 90-196 (251)
201 PF03704 BTAD: Bacterial trans 97.4 0.0016 3.5E-08 56.6 10.0 96 47-165 6-123 (146)
202 PF13525 YfiO: Outer membrane 97.4 0.0015 3.2E-08 60.5 10.2 125 47-183 42-186 (203)
203 COG2956 Predicted N-acetylgluc 97.4 0.0016 3.5E-08 62.7 10.4 104 47-173 180-284 (389)
204 PF13431 TPR_17: Tetratricopep 97.3 5E-05 1.1E-09 48.6 0.2 29 69-97 1-29 (34)
205 PF11789 zf-Nse: Zinc-finger o 97.3 0.00012 2.7E-09 52.6 2.2 42 200-241 9-53 (57)
206 PF13428 TPR_14: Tetratricopep 97.3 0.00018 3.8E-09 49.0 2.8 43 81-146 1-43 (44)
207 PF07719 TPR_2: Tetratricopept 97.3 0.00039 8.4E-09 44.0 4.1 34 47-80 1-34 (34)
208 PRK10866 outer membrane biogen 97.3 0.0024 5.1E-08 60.9 11.3 129 48-185 70-222 (243)
209 PF12968 DUF3856: Domain of Un 97.3 0.0014 3E-08 53.9 8.0 100 44-166 6-128 (144)
210 KOG1128 Uncharacterized conser 97.3 0.00065 1.4E-08 71.6 7.7 101 48-171 520-620 (777)
211 COG2956 Predicted N-acetylgluc 97.3 0.00072 1.6E-08 65.0 7.2 52 121-172 197-248 (389)
212 KOG1129 TPR repeat-containing 97.3 0.0005 1.1E-08 66.1 5.8 101 51-175 227-327 (478)
213 PF04733 Coatomer_E: Coatomer 97.2 0.0016 3.5E-08 63.7 9.4 111 47-182 131-245 (290)
214 KOG1400 Predicted ATP-dependen 97.2 0.00089 1.9E-08 64.5 7.2 106 284-389 61-175 (371)
215 PRK14720 transcript cleavage f 97.2 0.00068 1.5E-08 74.9 7.3 94 48-167 66-178 (906)
216 PF12569 NARP1: NMDA receptor- 97.2 0.0017 3.6E-08 68.4 9.9 56 121-176 211-266 (517)
217 KOG1840 Kinesin light chain [C 97.2 0.00049 1.1E-08 71.7 5.8 96 49-167 243-354 (508)
218 PF13428 TPR_14: Tetratricopep 97.2 0.00032 7E-09 47.6 2.7 43 138-180 1-43 (44)
219 KOG3785 Uncharacterized conser 97.1 0.0017 3.8E-08 63.0 8.3 122 54-175 64-222 (557)
220 PRK10803 tol-pal system protei 97.1 0.00091 2E-08 64.4 6.2 75 82-179 143-221 (263)
221 PF12688 TPR_5: Tetratrico pep 97.1 0.0013 2.7E-08 55.3 6.2 73 81-176 1-79 (120)
222 PF14938 SNAP: Soluble NSF att 97.1 0.0016 3.5E-08 63.5 7.7 108 46-176 113-234 (282)
223 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.00099 2.2E-08 47.1 4.0 49 139-187 2-50 (53)
224 PF04733 Coatomer_E: Coatomer 97.0 0.0021 4.6E-08 62.8 7.7 100 54-176 172-274 (290)
225 PF15015 NYD-SP12_N: Spermatog 97.0 0.0048 1.1E-07 61.3 9.9 96 46-164 175-288 (569)
226 KOG4507 Uncharacterized conser 96.9 0.0024 5.3E-08 65.7 7.5 100 59-181 619-719 (886)
227 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0034 7.3E-08 63.8 8.1 101 59-185 181-281 (395)
228 KOG0376 Serine-threonine phosp 96.8 0.0022 4.8E-08 64.9 6.4 86 50-158 41-128 (476)
229 PF06552 TOM20_plant: Plant sp 96.8 0.0056 1.2E-07 54.5 7.8 67 61-139 49-115 (186)
230 COG4785 NlpI Lipoprotein NlpI, 96.8 0.0017 3.7E-08 59.2 4.6 73 80-175 64-136 (297)
231 KOG0297 TNF receptor-associate 96.8 0.00085 1.8E-08 68.3 2.9 49 199-247 18-67 (391)
232 KOG4555 TPR repeat-containing 96.8 0.0019 4.2E-08 54.1 4.3 63 86-171 48-110 (175)
233 PF12569 NARP1: NMDA receptor- 96.7 0.0076 1.6E-07 63.5 9.5 97 49-168 196-292 (517)
234 KOG4151 Myosin assembly protei 96.7 0.004 8.6E-08 66.6 7.4 120 43-185 49-174 (748)
235 PRK10153 DNA-binding transcrip 96.7 0.0032 6.8E-08 66.6 6.7 75 49-147 422-496 (517)
236 KOG0495 HAT repeat protein [RN 96.7 0.0097 2.1E-07 62.3 9.6 104 56-182 660-763 (913)
237 PF13181 TPR_8: Tetratricopept 96.7 0.0011 2.4E-08 42.0 1.8 33 139-171 2-34 (34)
238 KOG2376 Signal recognition par 96.6 0.012 2.5E-07 61.1 9.9 121 48-171 13-143 (652)
239 KOG1130 Predicted G-alpha GTPa 96.6 0.0013 2.8E-08 65.1 3.0 98 48-168 196-305 (639)
240 COG1729 Uncharacterized protei 96.6 0.0041 8.9E-08 58.9 6.2 79 84-185 144-225 (262)
241 KOG2376 Signal recognition par 96.6 0.0087 1.9E-07 61.9 8.7 105 49-176 112-262 (652)
242 PF14938 SNAP: Soluble NSF att 96.6 0.0036 7.8E-08 61.1 5.7 96 52-170 79-187 (282)
243 KOG4340 Uncharacterized conser 96.6 0.018 3.8E-07 55.0 9.8 105 56-187 19-123 (459)
244 KOG4172 Predicted E3 ubiquitin 96.5 0.00055 1.2E-08 47.3 -0.3 44 203-246 8-53 (62)
245 PF13512 TPR_18: Tetratricopep 96.5 0.01 2.2E-07 51.0 7.3 83 48-139 48-134 (142)
246 PRK15331 chaperone protein Sic 96.5 0.0067 1.4E-07 53.4 6.0 85 74-181 30-114 (165)
247 KOG1039 Predicted E3 ubiquitin 96.4 0.0016 3.5E-08 64.2 1.9 47 200-246 159-220 (344)
248 KOG2114 Vacuolar assembly/sort 96.3 0.011 2.3E-07 63.5 7.6 48 196-246 834-882 (933)
249 KOG0804 Cytoplasmic Zn-finger 96.3 0.0022 4.8E-08 63.9 2.3 50 195-246 168-221 (493)
250 COG5222 Uncharacterized conser 96.3 0.0071 1.5E-07 57.0 5.3 42 203-244 275-318 (427)
251 KOG4648 Uncharacterized conser 96.3 0.0038 8.3E-08 60.5 3.7 70 47-139 131-200 (536)
252 KOG3364 Membrane protein invol 96.2 0.012 2.6E-07 49.7 5.9 72 116-187 47-120 (149)
253 PF13181 TPR_8: Tetratricopept 96.2 0.0059 1.3E-07 38.5 3.3 33 47-79 1-33 (34)
254 KOG4265 Predicted E3 ubiquitin 96.2 0.0027 5.9E-08 61.8 2.3 46 202-247 290-336 (349)
255 KOG0545 Aryl-hydrocarbon recep 96.2 0.025 5.4E-07 52.6 8.3 71 50-143 233-303 (329)
256 KOG3824 Huntingtin interacting 96.1 0.013 2.8E-07 56.1 6.3 84 42-148 111-194 (472)
257 KOG1785 Tyrosine kinase negati 96.0 0.0028 6.1E-08 61.9 1.6 46 203-248 370-417 (563)
258 COG5194 APC11 Component of SCF 96.0 0.0053 1.1E-07 46.1 2.6 29 219-247 53-81 (88)
259 COG2976 Uncharacterized protei 96.0 0.042 9.2E-07 49.5 8.8 100 47-171 89-192 (207)
260 COG0457 NrfG FOG: TPR repeat [ 96.0 0.066 1.4E-06 47.9 10.5 99 49-170 97-199 (291)
261 PRK10941 hypothetical protein; 96.0 0.014 3.1E-07 56.1 6.2 77 82-181 182-258 (269)
262 KOG4692 Predicted E3 ubiquitin 96.0 0.0065 1.4E-07 58.6 3.7 49 198-246 418-466 (489)
263 COG5219 Uncharacterized conser 96.0 0.0042 9E-08 67.0 2.6 48 199-246 1466-1522(1525)
264 KOG4814 Uncharacterized conser 96.0 0.027 5.9E-07 58.8 8.3 96 49-167 356-457 (872)
265 KOG1002 Nucleotide excision re 95.9 0.0026 5.5E-08 64.4 0.8 47 200-246 534-585 (791)
266 COG0457 NrfG FOG: TPR repeat [ 95.9 0.041 8.8E-07 49.3 8.8 92 56-170 139-234 (291)
267 KOG0828 Predicted E3 ubiquitin 95.9 0.0032 6.9E-08 63.3 1.4 49 199-247 568-634 (636)
268 PF13174 TPR_6: Tetratricopept 95.8 0.0095 2.1E-07 37.1 2.7 33 139-171 1-33 (33)
269 KOG1734 Predicted RING-contain 95.7 0.0095 2.1E-07 55.5 3.6 52 195-246 217-280 (328)
270 smart00028 TPR Tetratricopepti 95.7 0.014 3.1E-07 35.0 3.5 33 139-171 2-34 (34)
271 PRK10941 hypothetical protein; 95.7 0.036 7.9E-07 53.4 7.7 74 52-148 186-259 (269)
272 KOG2796 Uncharacterized conser 95.6 0.025 5.5E-07 53.1 5.9 119 52-170 182-318 (366)
273 COG4105 ComL DNA uptake lipopr 95.6 0.13 2.8E-06 48.6 10.5 125 48-187 72-216 (254)
274 KOG4340 Uncharacterized conser 95.6 0.023 5E-07 54.3 5.6 94 47-163 144-266 (459)
275 KOG0551 Hsp90 co-chaperone CNS 95.6 0.062 1.3E-06 52.2 8.5 65 48-135 120-184 (390)
276 COG3071 HemY Uncharacterized e 95.6 0.11 2.3E-06 51.8 10.3 119 42-183 79-198 (400)
277 KOG1130 Predicted G-alpha GTPa 95.5 0.025 5.5E-07 56.2 5.9 98 47-167 235-344 (639)
278 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.029 6.4E-07 39.6 4.6 43 83-148 3-45 (53)
279 KOG2471 TPR repeat-containing 95.5 0.031 6.6E-07 56.8 6.3 112 47-181 240-378 (696)
280 KOG3785 Uncharacterized conser 95.4 0.084 1.8E-06 51.7 8.8 89 54-165 29-118 (557)
281 KOG2053 Mitochondrial inherita 95.1 0.087 1.9E-06 57.3 8.6 92 56-170 18-109 (932)
282 KOG1493 Anaphase-promoting com 95.0 0.0079 1.7E-07 44.8 0.6 29 219-247 50-81 (84)
283 KOG0825 PHD Zn-finger protein 94.9 0.006 1.3E-07 64.5 -0.5 46 201-246 122-170 (1134)
284 smart00028 TPR Tetratricopepti 94.9 0.049 1.1E-06 32.5 3.9 33 48-80 2-34 (34)
285 PF13176 TPR_7: Tetratricopept 94.9 0.0092 2E-07 38.5 0.4 29 140-168 1-29 (36)
286 COG3071 HemY Uncharacterized e 94.9 0.09 2E-06 52.2 7.4 101 47-173 263-363 (400)
287 PF06957 COPI_C: Coatomer (COP 94.8 0.11 2.5E-06 52.8 8.3 115 44-173 201-335 (422)
288 PF14561 TPR_20: Tetratricopep 94.8 0.11 2.5E-06 41.2 6.6 51 122-172 6-56 (90)
289 PF11793 FANCL_C: FANCL C-term 94.7 0.013 2.9E-07 44.1 1.0 46 202-247 2-66 (70)
290 PF10579 Rapsyn_N: Rapsyn N-te 94.7 0.14 3.1E-06 39.0 6.5 66 45-133 4-72 (80)
291 smart00744 RINGv The RING-vari 94.7 0.03 6.5E-07 38.9 2.6 40 204-243 1-49 (49)
292 PF13176 TPR_7: Tetratricopept 94.6 0.038 8.2E-07 35.5 3.0 27 50-76 2-28 (36)
293 PF14447 Prok-RING_4: Prokaryo 94.6 0.015 3.2E-07 40.8 1.0 45 201-247 6-50 (55)
294 KOG0827 Predicted E3 ubiquitin 94.6 0.018 3.8E-07 56.5 1.8 42 202-243 4-52 (465)
295 PF10300 DUF3808: Protein of u 94.6 0.12 2.6E-06 54.2 8.2 95 47-165 267-374 (468)
296 COG4976 Predicted methyltransf 94.5 0.042 9E-07 50.7 3.9 62 55-139 3-64 (287)
297 KOG1586 Protein required for f 94.5 0.25 5.5E-06 45.8 9.0 103 51-176 117-233 (288)
298 PF13174 TPR_6: Tetratricopept 94.5 0.063 1.4E-06 33.2 3.7 32 49-80 2-33 (33)
299 PF03704 BTAD: Bacterial trans 94.5 0.094 2E-06 45.4 6.1 62 48-132 63-124 (146)
300 KOG4367 Predicted Zn-finger pr 94.5 0.022 4.8E-07 56.4 2.2 36 200-235 2-37 (699)
301 KOG4275 Predicted E3 ubiquitin 94.5 0.033 7.1E-07 52.6 3.2 41 202-246 300-341 (350)
302 COG4976 Predicted methyltransf 94.4 0.034 7.4E-07 51.3 3.2 54 121-174 12-65 (287)
303 KOG2610 Uncharacterized conser 94.3 0.22 4.7E-06 48.6 8.5 107 53-182 109-219 (491)
304 KOG4739 Uncharacterized protei 94.2 0.017 3.7E-07 53.5 0.7 60 204-269 5-66 (233)
305 PF10300 DUF3808: Protein of u 94.1 0.13 2.8E-06 54.0 7.2 88 59-169 245-336 (468)
306 KOG1645 RING-finger-containing 94.0 0.03 6.6E-07 55.3 2.0 45 202-246 4-55 (463)
307 KOG3081 Vesicle coat complex C 94.0 0.37 8.1E-06 45.6 9.0 61 121-181 190-250 (299)
308 KOG1308 Hsp70-interacting prot 93.9 0.048 1E-06 53.2 3.1 68 46-136 147-214 (377)
309 KOG0826 Predicted E3 ubiquitin 93.8 0.049 1.1E-06 52.4 3.0 50 197-246 295-345 (357)
310 KOG2930 SCF ubiquitin ligase, 93.7 0.035 7.6E-07 44.0 1.5 28 219-246 80-107 (114)
311 KOG4642 Chaperone-dependent E3 93.6 0.062 1.3E-06 49.9 3.2 61 121-181 27-87 (284)
312 PF09986 DUF2225: Uncharacteri 93.6 0.26 5.5E-06 46.0 7.4 101 56-172 86-199 (214)
313 PLN03081 pentatricopeptide (PP 93.6 0.16 3.5E-06 56.2 7.2 105 49-178 428-534 (697)
314 PF10602 RPN7: 26S proteasome 93.6 0.52 1.1E-05 42.5 9.2 97 47-166 36-141 (177)
315 KOG3824 Huntingtin interacting 93.5 0.19 4.1E-06 48.4 6.3 62 121-182 133-194 (472)
316 PF05843 Suf: Suppressor of fo 93.4 0.5 1.1E-05 46.0 9.4 97 53-172 7-104 (280)
317 KOG2796 Uncharacterized conser 93.3 0.56 1.2E-05 44.4 8.9 92 42-162 143-236 (366)
318 COG2912 Uncharacterized conser 93.2 0.3 6.6E-06 46.5 7.2 72 54-148 188-259 (269)
319 COG4700 Uncharacterized protei 93.0 0.57 1.2E-05 42.1 8.2 95 55-173 64-159 (251)
320 KOG3364 Membrane protein invol 93.0 0.46 1E-05 40.3 7.2 66 60-148 48-115 (149)
321 KOG2610 Uncharacterized conser 92.9 0.41 8.8E-06 46.8 7.6 98 44-164 134-235 (491)
322 KOG1915 Cell cycle control pro 92.7 0.89 1.9E-05 46.5 9.9 105 58-188 377-487 (677)
323 KOG1585 Protein required for f 92.7 0.87 1.9E-05 42.7 9.1 112 42-176 26-148 (308)
324 PLN03077 Protein ECB2; Provisi 92.7 0.36 7.9E-06 54.8 8.3 102 54-180 596-699 (857)
325 KOG3039 Uncharacterized conser 92.6 0.094 2E-06 48.4 2.8 48 200-247 219-270 (303)
326 PF14561 TPR_20: Tetratricopep 92.4 0.35 7.5E-06 38.4 5.5 50 66-138 7-56 (90)
327 KOG2396 HAT (Half-A-TPR) repea 92.3 0.6 1.3E-05 48.0 8.4 92 64-178 88-180 (568)
328 KOG2053 Mitochondrial inherita 92.3 0.75 1.6E-05 50.3 9.5 102 47-172 43-144 (932)
329 KOG1571 Predicted E3 ubiquitin 92.3 0.1 2.2E-06 51.2 2.7 46 198-246 301-346 (355)
330 KOG1941 Acetylcholine receptor 92.3 0.33 7.2E-06 47.9 6.2 54 121-174 100-158 (518)
331 KOG3800 Predicted E3 ubiquitin 91.9 0.11 2.3E-06 49.4 2.4 43 204-246 2-50 (300)
332 PRK04841 transcriptional regul 91.9 0.41 9E-06 54.5 7.7 96 49-167 454-560 (903)
333 KOG4185 Predicted E3 ubiquitin 91.8 0.13 2.8E-06 50.5 3.0 65 202-266 3-77 (296)
334 PF05290 Baculo_IE-1: Baculovi 91.8 0.19 4.2E-06 42.0 3.4 47 201-247 79-132 (140)
335 COG2912 Uncharacterized conser 91.7 0.31 6.8E-06 46.5 5.2 78 82-182 182-259 (269)
336 KOG1001 Helicase-like transcri 91.6 0.086 1.9E-06 57.3 1.6 43 203-246 455-499 (674)
337 PF13281 DUF4071: Domain of un 91.5 2.4 5.2E-05 42.7 11.6 113 50-176 182-343 (374)
338 PF04184 ST7: ST7 protein; In 91.3 1.1 2.3E-05 46.4 8.9 93 55-170 176-291 (539)
339 PF07079 DUF1347: Protein of u 91.3 2.3 5E-05 43.4 11.0 110 43-164 375-521 (549)
340 PF04641 Rtf2: Rtf2 RING-finge 91.3 0.17 3.7E-06 48.7 3.2 48 199-247 110-161 (260)
341 PLN03081 pentatricopeptide (PP 91.3 0.69 1.5E-05 51.2 8.4 94 49-166 292-388 (697)
342 KOG3081 Vesicle coat complex C 91.3 1.5 3.2E-05 41.8 9.1 93 60-175 186-279 (299)
343 PF02259 FAT: FAT domain; Int 91.1 1.3 2.9E-05 44.0 9.6 114 47-170 184-341 (352)
344 PLN03218 maturation of RBCL 1; 90.6 1 2.3E-05 51.9 9.1 41 57-97 589-630 (1060)
345 PRK04841 transcriptional regul 90.5 0.63 1.4E-05 53.0 7.4 99 48-169 492-604 (903)
346 PF10367 Vps39_2: Vacuolar sor 90.4 0.35 7.7E-06 39.4 3.9 32 199-230 75-108 (109)
347 KOG1915 Cell cycle control pro 90.4 2 4.2E-05 44.1 9.6 101 50-173 76-176 (677)
348 COG5236 Uncharacterized conser 90.3 0.2 4.3E-06 48.5 2.5 47 199-245 58-106 (493)
349 KOG4445 Uncharacterized conser 90.2 0.2 4.4E-06 47.6 2.4 33 201-233 114-149 (368)
350 PF05843 Suf: Suppressor of fo 90.1 0.94 2E-05 44.1 7.2 108 50-180 38-149 (280)
351 KOG3161 Predicted E3 ubiquitin 90.0 0.14 3E-06 53.5 1.3 39 202-240 11-53 (861)
352 COG5191 Uncharacterized conser 90.0 0.44 9.5E-06 46.1 4.6 92 66-180 92-184 (435)
353 KOG2471 TPR repeat-containing 90.0 0.43 9.2E-06 48.8 4.7 79 49-150 285-381 (696)
354 PF03854 zf-P11: P-11 zinc fin 90.0 0.21 4.6E-06 33.8 1.7 43 203-247 3-46 (50)
355 PF14570 zf-RING_4: RING/Ubox 89.8 0.21 4.6E-06 34.3 1.7 41 205-245 1-46 (48)
356 PF04184 ST7: ST7 protein; In 89.7 2.4 5.3E-05 43.8 9.8 62 82-166 260-323 (539)
357 PLN03218 maturation of RBCL 1; 89.6 1.3 2.8E-05 51.2 8.7 90 54-167 549-643 (1060)
358 KOG1586 Protein required for f 89.4 2.7 5.8E-05 39.3 8.9 94 57-173 83-189 (288)
359 PF09613 HrpB1_HrpK: Bacterial 88.9 2.7 5.9E-05 37.0 8.3 106 47-177 10-115 (160)
360 PF07800 DUF1644: Protein of u 88.9 0.4 8.6E-06 41.6 3.0 33 201-233 1-46 (162)
361 KOG1585 Protein required for f 88.6 5.7 0.00012 37.5 10.5 103 47-172 110-224 (308)
362 PF10516 SHNi-TPR: SHNi-TPR; 88.4 0.34 7.5E-06 31.6 1.9 29 139-167 2-30 (38)
363 PF14863 Alkyl_sulf_dimr: Alky 88.2 0.77 1.7E-05 39.7 4.4 51 47-97 70-120 (141)
364 COG5175 MOT2 Transcriptional r 88.1 0.44 9.6E-06 46.1 3.1 45 201-246 14-63 (480)
365 KOG0292 Vesicle coat complex C 88.0 4.7 0.0001 44.4 10.9 181 44-244 988-1188(1202)
366 PF13374 TPR_10: Tetratricopep 87.7 0.44 9.6E-06 31.0 2.2 29 139-167 3-31 (42)
367 PLN03077 Protein ECB2; Provisi 87.3 2.7 5.9E-05 47.7 9.6 97 48-170 555-656 (857)
368 KOG1814 Predicted E3 ubiquitin 86.8 0.66 1.4E-05 46.3 3.6 34 201-234 183-219 (445)
369 KOG3002 Zn finger protein [Gen 86.7 0.51 1.1E-05 46.1 2.7 59 199-265 45-104 (299)
370 PRK13184 pknD serine/threonine 86.3 3.8 8.2E-05 46.5 9.6 112 53-181 481-595 (932)
371 KOG0298 DEAD box-containing he 86.1 0.41 8.9E-06 54.3 2.0 48 199-246 1150-1198(1394)
372 KOG0530 Protein farnesyltransf 85.9 11 0.00025 35.9 10.9 97 57-175 53-150 (318)
373 COG3947 Response regulator con 85.7 1.4 3.1E-05 42.3 5.0 48 50-97 282-329 (361)
374 KOG4507 Uncharacterized conser 85.7 3.4 7.3E-05 43.5 8.0 76 49-147 644-719 (886)
375 PF08424 NRDE-2: NRDE-2, neces 85.5 2.9 6.4E-05 41.5 7.6 103 67-180 5-107 (321)
376 PF13374 TPR_10: Tetratricopep 85.5 1.3 2.9E-05 28.6 3.6 30 47-76 2-31 (42)
377 PF07720 TPR_3: Tetratricopept 85.2 1 2.2E-05 29.0 2.7 33 139-171 2-36 (36)
378 COG3914 Spy Predicted O-linked 84.9 4.4 9.6E-05 42.7 8.6 99 55-176 75-180 (620)
379 PF07079 DUF1347: Protein of u 84.9 4.3 9.4E-05 41.5 8.3 78 47-149 462-539 (549)
380 cd02682 MIT_AAA_Arch MIT: doma 84.5 10 0.00022 28.9 8.2 31 45-75 4-34 (75)
381 PF07721 TPR_4: Tetratricopept 84.3 1.3 2.9E-05 25.9 2.8 25 139-163 2-26 (26)
382 KOG0530 Protein farnesyltransf 83.6 3 6.5E-05 39.6 6.1 94 60-176 91-185 (318)
383 KOG3970 Predicted E3 ubiquitin 83.5 1.4 2.9E-05 40.3 3.7 48 201-248 49-106 (299)
384 PHA02537 M terminase endonucle 82.9 5.8 0.00013 37.2 7.8 118 57-187 93-226 (230)
385 COG5191 Uncharacterized conser 82.7 5.2 0.00011 39.0 7.4 73 47-142 107-180 (435)
386 COG3629 DnrI DNA-binding trans 82.4 4.7 0.0001 39.0 7.2 63 82-167 154-216 (280)
387 KOG2042 Ubiquitin fusion degra 82.3 3.7 8E-05 45.9 7.2 69 199-269 867-936 (943)
388 TIGR02561 HrpB1_HrpK type III 82.2 11 0.00024 32.7 8.6 85 48-155 11-95 (153)
389 KOG2034 Vacuolar sorting prote 82.1 1.6 3.5E-05 47.8 4.3 35 200-234 815-851 (911)
390 PHA03096 p28-like protein; Pro 82.0 0.72 1.6E-05 44.7 1.5 42 203-244 179-231 (284)
391 PF10516 SHNi-TPR: SHNi-TPR; 81.8 2 4.3E-05 28.0 3.0 29 49-77 3-31 (38)
392 KOG2817 Predicted E3 ubiquitin 81.7 1.1 2.3E-05 44.8 2.6 47 199-245 331-383 (394)
393 PF12862 Apc5: Anaphase-promot 81.7 2.2 4.7E-05 34.0 4.0 53 121-173 15-76 (94)
394 KOG1070 rRNA processing protei 81.1 5.7 0.00012 46.0 8.2 102 57-181 1540-1643(1710)
395 PF12862 Apc5: Anaphase-promot 80.9 2.8 6.1E-05 33.3 4.4 57 56-135 7-72 (94)
396 COG3898 Uncharacterized membra 80.3 6.4 0.00014 39.6 7.3 92 50-166 123-216 (531)
397 PF07720 TPR_3: Tetratricopept 79.8 3.9 8.5E-05 26.3 3.9 32 49-80 3-36 (36)
398 KOG4362 Transcriptional regula 79.7 0.87 1.9E-05 48.8 1.3 46 201-246 20-68 (684)
399 KOG0546 HSP90 co-chaperone CPR 78.8 1.9 4.1E-05 42.6 3.2 77 54-153 282-358 (372)
400 COG3914 Spy Predicted O-linked 78.7 5.5 0.00012 42.0 6.6 98 58-178 41-142 (620)
401 PRK15180 Vi polysaccharide bio 78.6 15 0.00033 37.9 9.5 104 46-172 288-391 (831)
402 PF10255 Paf67: RNA polymerase 78.4 2.7 5.9E-05 42.8 4.3 57 86-166 127-192 (404)
403 PF04212 MIT: MIT (microtubule 78.0 3.8 8.2E-05 30.5 4.0 32 45-76 3-34 (69)
404 PF08746 zf-RING-like: RING-li 77.8 2.8 6.1E-05 28.1 2.9 38 205-242 1-43 (43)
405 COG3629 DnrI DNA-binding trans 77.6 5.6 0.00012 38.5 6.0 63 47-132 153-215 (280)
406 cd02683 MIT_1 MIT: domain cont 77.4 30 0.00064 26.4 9.2 32 45-76 4-35 (77)
407 cd02681 MIT_calpain7_1 MIT: do 76.9 3.8 8.2E-05 31.3 3.7 33 44-76 3-35 (76)
408 PF13281 DUF4071: Domain of un 76.7 9.4 0.0002 38.6 7.5 87 61-170 155-258 (374)
409 KOG0686 COP9 signalosome, subu 76.1 11 0.00023 38.1 7.6 93 49-164 152-255 (466)
410 TIGR03504 FimV_Cterm FimV C-te 75.9 2.9 6.4E-05 28.2 2.6 26 141-166 2-27 (44)
411 PF10373 EST1_DNA_bind: Est1 D 75.7 4.8 0.0001 38.6 5.2 59 123-181 1-59 (278)
412 KOG2932 E3 ubiquitin ligase in 75.4 1.3 2.7E-05 42.6 1.0 41 204-246 92-133 (389)
413 PF02259 FAT: FAT domain; Int 75.2 22 0.00048 35.2 10.0 117 46-185 145-305 (352)
414 KOG3039 Uncharacterized conser 74.8 2.3 5E-05 39.5 2.4 33 201-233 42-74 (303)
415 PF08424 NRDE-2: NRDE-2, neces 74.4 8.2 0.00018 38.3 6.5 84 60-166 44-130 (321)
416 KOG2396 HAT (Half-A-TPR) repea 73.8 17 0.00036 37.9 8.4 63 57-141 114-177 (568)
417 KOG1812 Predicted E3 ubiquitin 73.6 8.1 0.00017 39.4 6.3 34 201-234 145-182 (384)
418 PHA02825 LAP/PHD finger-like p 73.2 3.1 6.8E-05 36.2 2.7 46 201-247 7-59 (162)
419 cd02680 MIT_calpain7_2 MIT: do 72.8 5 0.00011 30.6 3.4 33 45-77 4-36 (75)
420 COG3947 Response regulator con 72.7 4.9 0.00011 38.8 4.1 60 82-164 280-339 (361)
421 PF10579 Rapsyn_N: Rapsyn N-te 72.7 11 0.00024 28.9 5.3 46 121-166 23-71 (80)
422 PF08631 SPO22: Meiosis protei 72.0 48 0.001 32.1 11.1 105 44-168 32-151 (278)
423 COG3898 Uncharacterized membra 71.7 16 0.00035 36.9 7.5 98 52-174 268-365 (531)
424 PF10373 EST1_DNA_bind: Est1 D 71.0 8 0.00017 37.0 5.5 62 66-150 1-62 (278)
425 PF09613 HrpB1_HrpK: Bacterial 70.7 16 0.00034 32.3 6.6 56 121-176 27-82 (160)
426 KOG2066 Vacuolar assembly/sort 69.9 6.9 0.00015 42.6 4.9 41 202-243 784-831 (846)
427 PF12968 DUF3856: Domain of Un 69.0 13 0.00029 31.0 5.4 46 121-166 26-83 (144)
428 PF02891 zf-MIZ: MIZ/SP-RING z 68.0 3.7 8.1E-05 28.5 1.7 41 203-244 3-49 (50)
429 PF05883 Baculo_RING: Baculovi 67.8 2.8 6E-05 35.5 1.2 43 202-244 26-77 (134)
430 PHA02862 5L protein; Provision 67.4 4.4 9.5E-05 34.6 2.3 44 203-247 3-53 (156)
431 smart00745 MIT Microtubule Int 67.1 9.5 0.00021 28.9 4.1 34 43-76 4-37 (77)
432 COG4455 ImpE Protein of avirul 67.0 35 0.00075 31.8 8.1 62 55-139 9-70 (273)
433 COG5220 TFB3 Cdk activating ki 66.9 2.3 4.9E-05 39.3 0.6 46 201-246 9-63 (314)
434 COG4941 Predicted RNA polymera 66.9 31 0.00068 34.1 8.2 95 60-178 309-405 (415)
435 PF12906 RINGv: RING-variant d 66.4 4.7 0.0001 27.6 2.0 38 205-242 1-47 (47)
436 COG5091 SGT1 Suppressor of G2 66.0 37 0.0008 32.5 8.3 119 55-187 3-127 (368)
437 PF08631 SPO22: Meiosis protei 64.8 11 0.00025 36.4 5.1 110 57-175 3-124 (278)
438 KOG3899 Uncharacterized conser 64.8 3.6 7.8E-05 39.2 1.5 27 220-246 325-364 (381)
439 KOG2300 Uncharacterized conser 64.6 37 0.00079 35.3 8.5 98 45-165 44-154 (629)
440 cd02684 MIT_2 MIT: domain cont 64.3 11 0.00023 28.7 3.8 32 45-76 4-35 (75)
441 smart00386 HAT HAT (Half-A-TPR 64.3 5.8 0.00013 23.7 2.0 29 61-89 1-29 (33)
442 KOG2561 Adaptor protein NUB1, 63.7 18 0.00038 37.0 6.1 106 47-165 163-294 (568)
443 PF11207 DUF2989: Protein of u 62.7 12 0.00026 34.3 4.4 56 79-158 139-198 (203)
444 KOG2047 mRNA splicing factor [ 62.4 1.2E+02 0.0027 32.8 12.1 100 48-170 426-543 (835)
445 KOG4563 Cell cycle-regulated h 62.4 12 0.00026 37.3 4.6 56 42-97 36-99 (400)
446 KOG1310 WD40 repeat protein [G 62.3 14 0.00031 38.5 5.3 63 52-137 413-478 (758)
447 cd02678 MIT_VPS4 MIT: domain c 62.3 65 0.0014 24.3 9.3 32 45-76 4-35 (75)
448 cd02682 MIT_AAA_Arch MIT: doma 62.2 18 0.00039 27.5 4.6 55 119-181 2-56 (75)
449 KOG1550 Extracellular protein 62.1 36 0.00078 36.6 8.7 97 49-167 246-357 (552)
450 COG4649 Uncharacterized protei 62.0 90 0.0019 28.1 9.5 95 48-166 95-195 (221)
451 COG4455 ImpE Protein of avirul 62.0 25 0.00054 32.8 6.2 55 121-175 18-72 (273)
452 KOG3799 Rab3 effector RIM1 and 61.8 6 0.00013 33.2 2.1 41 198-248 61-101 (169)
453 cd02656 MIT MIT: domain contai 61.2 13 0.00029 27.9 3.9 32 45-76 4-35 (75)
454 PF09986 DUF2225: Uncharacteri 60.6 22 0.00048 33.0 6.0 62 53-137 131-198 (214)
455 COG2976 Uncharacterized protei 60.6 91 0.002 28.6 9.5 57 85-164 93-152 (207)
456 COG3118 Thioredoxin domain-con 60.4 26 0.00057 34.0 6.5 44 121-164 151-194 (304)
457 PF04910 Tcf25: Transcriptiona 60.0 26 0.00056 35.4 6.8 77 74-173 33-139 (360)
458 KOG3113 Uncharacterized conser 59.9 14 0.0003 34.7 4.3 45 201-247 110-158 (293)
459 PF06844 DUF1244: Protein of u 59.7 4.8 0.0001 29.4 1.0 12 223-234 11-22 (68)
460 cd02677 MIT_SNX15 MIT: domain 59.2 14 0.00031 28.0 3.7 33 44-76 3-35 (75)
461 PF14863 Alkyl_sulf_dimr: Alky 59.1 19 0.00041 31.1 4.8 52 82-156 71-122 (141)
462 PF07219 HemY_N: HemY protein 59.0 16 0.00035 29.9 4.2 54 42-95 54-107 (108)
463 KOG3268 Predicted E3 ubiquitin 58.9 5.7 0.00012 35.0 1.6 46 202-247 165-228 (234)
464 KOG1940 Zn-finger protein [Gen 57.5 5.9 0.00013 38.1 1.6 44 201-244 157-204 (276)
465 PF06906 DUF1272: Protein of u 57.3 9.6 0.00021 27.0 2.2 28 219-248 26-53 (57)
466 PF14569 zf-UDP: Zinc-binding 55.5 12 0.00026 28.4 2.6 45 202-246 9-61 (80)
467 KOG1100 Predicted E3 ubiquitin 55.4 5.3 0.00012 36.9 0.9 38 205-246 161-199 (207)
468 PF10272 Tmpp129: Putative tra 55.2 41 0.00088 33.8 7.0 25 222-246 313-350 (358)
469 KOG2041 WD40 repeat protein [G 55.2 72 0.0016 34.8 9.0 88 42-164 791-878 (1189)
470 KOG0890 Protein kinase of the 54.6 27 0.00059 42.9 6.6 90 45-148 1700-1799(2382)
471 KOG0529 Protein geranylgeranyl 54.2 41 0.00089 34.2 6.9 103 56-181 84-192 (421)
472 PF10602 RPN7: 26S proteasome 54.2 33 0.00071 30.8 5.8 63 82-167 37-102 (177)
473 KOG2047 mRNA splicing factor [ 54.1 49 0.0011 35.7 7.6 91 57-171 357-457 (835)
474 PRK04023 DNA polymerase II lar 53.7 8.5 0.00018 43.3 2.2 46 200-247 624-674 (1121)
475 PF11817 Foie-gras_1: Foie gra 53.5 21 0.00046 33.9 4.7 47 51-97 182-234 (247)
476 KOG2300 Uncharacterized conser 53.1 47 0.001 34.6 7.1 94 48-168 368-475 (629)
477 PF04910 Tcf25: Transcriptiona 52.0 50 0.0011 33.4 7.3 101 47-170 103-225 (360)
478 PF11207 DUF2989: Protein of u 51.2 27 0.00058 32.1 4.6 43 55-97 148-194 (203)
479 KOG4814 Uncharacterized conser 51.1 35 0.00075 36.7 6.0 71 82-175 355-431 (872)
480 PF10235 Cript: Microtubule-as 50.9 8.9 0.00019 30.2 1.3 36 202-246 44-79 (90)
481 cd02679 MIT_spastin MIT: domai 50.6 22 0.00048 27.3 3.5 34 43-76 4-37 (79)
482 KOG1070 rRNA processing protei 50.6 55 0.0012 38.5 7.8 101 47-170 1564-1666(1710)
483 KOG0529 Protein geranylgeranyl 50.6 1.7E+02 0.0036 30.0 10.4 156 57-234 38-197 (421)
484 TIGR02561 HrpB1_HrpK type III 50.5 53 0.0012 28.6 6.1 52 121-172 27-78 (153)
485 PF09670 Cas_Cas02710: CRISPR- 50.4 62 0.0013 32.9 7.8 46 48-93 132-179 (379)
486 COG5109 Uncharacterized conser 50.1 11 0.00025 36.4 2.2 46 199-244 333-384 (396)
487 cd02681 MIT_calpain7_1 MIT: do 50.0 13 0.00029 28.3 2.1 17 119-135 2-18 (76)
488 KOG1428 Inhibitor of type V ad 49.8 18 0.00039 42.2 3.9 48 199-246 3483-3543(3738)
489 KOG1952 Transcription factor N 49.6 17 0.00036 40.1 3.6 46 201-246 190-246 (950)
490 PF02064 MAS20: MAS20 protein 49.5 23 0.0005 29.7 3.7 33 49-81 65-97 (121)
491 KOG3617 WD40 and TPR repeat-co 48.9 63 0.0014 36.0 7.6 94 50-166 861-995 (1416)
492 KOG1550 Extracellular protein 48.7 50 0.0011 35.5 7.1 89 53-168 294-394 (552)
493 PF10952 DUF2753: Protein of u 47.1 29 0.00064 29.1 3.8 29 48-76 2-30 (140)
494 PF05605 zf-Di19: Drought indu 46.8 12 0.00025 26.3 1.4 37 202-245 2-40 (54)
495 COG0790 FOG: TPR repeat, SEL1 46.2 93 0.002 29.9 8.1 103 49-169 111-222 (292)
496 PF13240 zinc_ribbon_2: zinc-r 46.0 4.5 9.7E-05 23.2 -0.7 10 235-244 12-21 (23)
497 KOG0985 Vesicle coat protein c 45.1 50 0.0011 37.6 6.3 50 50-130 1197-1246(1666)
498 KOG3579 Predicted E3 ubiquitin 44.9 11 0.00025 35.8 1.3 34 201-234 267-304 (352)
499 PRK15180 Vi polysaccharide bio 44.7 45 0.00098 34.6 5.5 96 53-171 329-424 (831)
500 COG3813 Uncharacterized protei 44.5 15 0.00032 27.3 1.6 27 219-247 26-52 (84)
No 1
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.93 E-value=1.3e-25 Score=244.04 Aligned_cols=174 Identities=19% Similarity=0.258 Sum_probs=149.3
Q ss_pred CCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCceeEEEEec------CCCCCcccceeEEEEEEeeecCCceEE
Q 011861 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIID------PTTGSVADFACEVEITECEPLPDGRFV 359 (476)
Q Consensus 288 ~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~v~~~~------~~~~~l~~iGt~~~I~~~~~~~dG~~~ 359 (476)
.+|+||++ |+|||+.+||+||+++|++|+++++.+++.||++++. |..+++|+|||+|+|.++.++|||++.
T Consensus 10 ~LPLfPLr~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~p~~~dLy~VGtla~I~~~~~l~DG~~~ 89 (784)
T PRK10787 10 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 89 (784)
T ss_pred eEEEEECCCceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcccccCccEEEEEEEeeECCCCeEE
Confidence 59999998 9999999999999999999999999999999999982 233579999999999999999999999
Q ss_pred EEEEecceeEEeeeecCCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhcccC
Q 011861 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 439 (476)
Q Consensus 360 V~v~G~~R~~I~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~ 439 (476)
|+++|++||+|.++.+.+||++|+|++++++.. ...+.+++.+.+.+.+.++.......+.+ ....
T Consensus 90 Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~----~~~e~~al~~~ll~~~~~~~~l~~~~~~e----------~~~~ 155 (784)
T PRK10787 90 VLVEGLQRARISALSDNGEHFSAKAEYLESPTI----DEREQEVLVRTAISQFEGYIKLNKKIPPE----------VLTS 155 (784)
T ss_pred EEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCC----CchHHHHHHHHHHHHHHHHHHhcccCCHH----------HHhh
Confidence 999999999999998999999999999987432 22345677788888888888877655441 1122
Q ss_pred CCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCCC
Q 011861 440 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRE 475 (476)
Q Consensus 440 ~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~e 475 (476)
+...+||+.|+|++|+++|++.++||+|||+.|+.+
T Consensus 156 ~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~e 191 (784)
T PRK10787 156 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNE 191 (784)
T ss_pred hhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHH
Confidence 345689999999999999999999999999999753
No 2
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-24 Score=222.75 Aligned_cols=175 Identities=20% Similarity=0.291 Sum_probs=154.7
Q ss_pred CCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcC-ceeEEEEe------cCCCCCcccceeEEEEEEeeecCCceE
Q 011861 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGN-HRMGMVII------DPTTGSVADFACEVEITECEPLPDGRF 358 (476)
Q Consensus 288 ~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~-~~~~v~~~------~~~~~~l~~iGt~~~I~~~~~~~dG~~ 358 (476)
.+|++|++ |+||+|++|+.|++++++.+++.++.++ +.+++++| +|..+++|.+||+|+|.++.++|||++
T Consensus 9 ~lpvlplr~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~p~~~dly~vGt~a~I~q~~~lpdg~~ 88 (782)
T COG0466 9 ELPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLYEVGTLAKILQILKLPDGTV 88 (782)
T ss_pred cceeEEecCceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCCCChhhhhhcchheeeeeeeeCCCCcE
Confidence 68999999 9999999999999999999999999996 88999998 344568999999999999999999999
Q ss_pred EEEEEecceeEEeeeecCCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccc
Q 011861 359 VLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEV 438 (476)
Q Consensus 359 ~V~v~G~~R~~I~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~il~~~~ 438 (476)
+|+|+|++|++|.++...++++.|+++.+++.+.+ ...+++++.+.+...|.+|+..++.++.+ .+.
T Consensus 89 kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~---~~~~~~al~~~i~~~~~~~~~l~~~~~~e----------~l~ 155 (782)
T COG0466 89 KVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPID---EEREIEALVRSILSEFEEYAKLNKKIPPE----------ELQ 155 (782)
T ss_pred EEEEEeeeeEEEEeeccCCCceEEEEEecCCCccc---chhHHHHHHHHHHHHHHHHHHhccCCCHH----------HHH
Confidence 99999999999999999999999999999875432 14578999999999999999998866652 222
Q ss_pred CCCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCCC
Q 011861 439 MMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRE 475 (476)
Q Consensus 439 ~~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~e 475 (476)
.+...++|+.|+|++|++++++.+++|++||+.|+.+
T Consensus 156 ~~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~ 192 (782)
T COG0466 156 SLNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKE 192 (782)
T ss_pred HHhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHH
Confidence 2335699999999999999999999999999998753
No 3
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.91 E-value=9.5e-25 Score=202.95 Aligned_cols=178 Identities=28% Similarity=0.527 Sum_probs=122.0
Q ss_pred CCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCce-eEEEEe-c-------CCCCCcccceeEEEEEEeeecCCc
Q 011861 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHR-MGMVII-D-------PTTGSVADFACEVEITECEPLPDG 356 (476)
Q Consensus 288 ~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~-~~v~~~-~-------~~~~~l~~iGt~~~I~~~~~~~dG 356 (476)
++|+||++ |+|||+++|+++++++++.|+++++.+++. ||+++. . +..+++|++||+|+|.++.+++||
T Consensus 1 ~lPv~pl~~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~I~~~~~~~dg 80 (205)
T PF02190_consen 1 ELPVFPLRNQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDEPSIDDLYSVGTLARIIRVEELPDG 80 (205)
T ss_dssp EEEEEEESSS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSSS-GGGB-SEEEEEEEEEEEESTTS
T ss_pred CEEEEEeCCcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccCCcccccccceEEEEEEEEEecCCC
Confidence 37999997 999999999999999999999999998775 888877 1 335679999999999999999999
Q ss_pred eEEEEEEecceeEEeee---ecCCCeeEEEEEEecCC-CCCCcchhhhHHHHHHHHHHHHHHHHHHhHHh-hHHHHHHHH
Q 011861 357 RFVLEIESRRRFRILRS---WDQDGYRVAEIEWVQDI-HPEGVEDRADLQDLTNNAAEYARLWLRREKES-ARQDRRRLE 431 (476)
Q Consensus 357 ~~~V~v~G~~R~~I~~~---~~~~~~~~a~v~~l~d~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~-~~~~~~~l~ 431 (476)
++.|.++|.+||+|.++ ..++||++|+|++++|. +....+...++.++...+.+.+.++....... +.
T Consensus 81 ~~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 153 (205)
T PF02190_consen 81 TYKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELLPW------- 153 (205)
T ss_dssp -EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC-CH-------
T ss_pred CEEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhcccch-------
Confidence 99999999999999999 56899999999999872 22222223344555554444444211222111 11
Q ss_pred HHhhcccCCCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCCC
Q 011861 432 KLLNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRE 475 (476)
Q Consensus 432 ~il~~~~~~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~e 475 (476)
+....+...++|..|+||+|+++|++.++||+||++.|+++
T Consensus 154 ---~~~~~~~~~~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~ 194 (205)
T PF02190_consen 154 ---DLLLKINNPDNPPELADFVASLLPLSPEEKQELLETDDLKE 194 (205)
T ss_dssp ---HHHHHTTTHHHHHHHHHHHHHHS---HHHHHHHHC--SHHH
T ss_pred ---hhhhhhhccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHH
Confidence 11111345578888999999999999999999999998753
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.91 E-value=5.1e-24 Score=233.84 Aligned_cols=174 Identities=18% Similarity=0.297 Sum_probs=145.6
Q ss_pred Ccceee--cccCCCccCCCCCChhHHHHHHHHHhcCceeE-EEEec------CCCCCcccceeEEEEEEeeecCC---ce
Q 011861 290 PLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMG-MVIID------PTTGSVADFACEVEITECEPLPD---GR 357 (476)
Q Consensus 290 Pl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~-v~~~~------~~~~~l~~iGt~~~I~~~~~~~d---G~ 357 (476)
|+||++ |+|||+.+||+||+++|++|+++++.+++.|+ ++++. |...++|+|||+|+|+++.++|| |+
T Consensus 1 Pl~PLr~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~p~~~~ly~VGt~a~I~~~~~~~d~~dG~ 80 (775)
T TIGR00763 1 PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEEPEEDDIYSVGVVAQILEMLPLPSSGTAT 80 (775)
T ss_pred CeEcCCCCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCCCCcccccCCceEEEEEEeccCCCCCCCe
Confidence 899997 99999999999999999999999999888887 66662 23457999999999999999555 99
Q ss_pred EEEEEEecceeEEeeeecCCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhH--HhhHHHHHHHHHHhh
Q 011861 358 FVLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREK--ESARQDRRRLEKLLN 435 (476)
Q Consensus 358 ~~V~v~G~~R~~I~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~~~~l~~il~ 435 (476)
+.|+|+|.+||+|.++.+++||++|+|+++++++.. ....++.++.+.+.+.+.++....+ ..+.+
T Consensus 81 ~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~--~~~~e~~al~~~l~~~~~el~~l~~l~~~~~e---------- 148 (775)
T TIGR00763 81 YKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFD--KDDEEIKALTREIKETFRELISLSKLFREQPA---------- 148 (775)
T ss_pred EEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCC--CCcHHHHHHHHHHHHHHHHHHHhCccccCCHH----------
Confidence 999999999999999999999999999999875321 1234678899999999999987765 33331
Q ss_pred cccCCCCCCChhhhHHHHHhcCCCC-hHHhHhhcccCCCCC
Q 011861 436 VEVMMPPSQDPERFSFWLATLSDRR-PSERLELLRIRDTRE 475 (476)
Q Consensus 436 ~~~~~~~~~~p~~l~~~va~~l~l~-~~~kq~LLe~~d~~e 475 (476)
.+..+...+||++|+|++|++||++ .++||+|||+.|+.+
T Consensus 149 ~~~~~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~ 189 (775)
T TIGR00763 149 LLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEK 189 (775)
T ss_pred HHHHHhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHH
Confidence 1112334589999999999999999 999999999999753
No 5
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.90 E-value=9.3e-23 Score=183.02 Aligned_cols=174 Identities=30% Similarity=0.475 Sum_probs=135.9
Q ss_pred CCCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCceeEEEEecCC---C----CCcccceeEEEEEEeeecCCce
Q 011861 287 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT---T----GSVADFACEVEITECEPLPDGR 357 (476)
Q Consensus 287 ~~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~v~~~~~~---~----~~l~~iGt~~~I~~~~~~~dG~ 357 (476)
..+|+|||+ |+|||..+|++||+++|..|++.++++++.||++..++. . ..+..|||+++|+++...+||+
T Consensus 10 ~~LplFPL~~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~~~~~~~~~~ls~VGcla~I~~~~~~~DGr 89 (221)
T COG2802 10 LELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGREVGGGLPPELSDVGCLARITEFEELGDGR 89 (221)
T ss_pred ceeeccccccccccCCCCCchhhccHHHHHHHHHHHhcCCceeEEEecccccccCCCcchhhccceeEEEeEeeEcCCCc
Confidence 469999996 999999999999999999999999999999999998652 1 2678999999999999999999
Q ss_pred EEEEEEecceeEEeeeec-CCCeeEEEEEEecCCCCCCcchhhhHHH-HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhh
Q 011861 358 FVLEIESRRRFRILRSWD-QDGYRVAEIEWVQDIHPEGVEDRADLQD-LTNNAAEYARLWLRREKESARQDRRRLEKLLN 435 (476)
Q Consensus 358 ~~V~v~G~~R~~I~~~~~-~~~~~~a~v~~l~d~~~~~~~~~~~l~~-l~~~l~~~~~~~~~~~~~~~~~~~~~l~~il~ 435 (476)
+.|.++|.+||||.++.. .+||.+|++++++|.+..... ..+++. +...+...++.|.+...-.. ++
T Consensus 90 ~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~-a~evdr~~~~~l~~~~r~~~~~~~l~~--------d~-- 158 (221)
T COG2802 90 YLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDG-AEEVDRRLDALLMRAARAYLQRLELLA--------DW-- 158 (221)
T ss_pred EEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcch-HHHHHHHHHHHHHHHHHHHhhhcchhh--------hh--
Confidence 999999999999999985 899999999999986543221 122222 11123333344443321111 11
Q ss_pred cccCCCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCC
Q 011861 436 VEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTR 474 (476)
Q Consensus 436 ~~~~~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~ 474 (476)
. .-...++..+++.++..+|++..+||.+|+..|+.
T Consensus 159 --~-~~~~~~~~~l~n~L~~llp~~~~~k~~ll~a~d~~ 194 (221)
T COG2802 159 --E-SYERASNADLANRLYMLLPFDPAEKQALLEAPDLP 194 (221)
T ss_pred --c-ccccccHHHHHHHHHHhCCCChhHHHHHHhccchH
Confidence 1 12346789999999999999999999999998864
No 6
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-22 Score=199.03 Aligned_cols=276 Identities=32% Similarity=0.616 Sum_probs=204.0
Q ss_pred CCCCCCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCC---CCcccchhHHHHHHHhCch
Q 011861 193 IHGTPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP---RTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 193 ~~~~~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~---~~~~~n~~l~~~~~~~~~~ 269 (476)
..+......+|.|.+|...+..|+++||||+||..||.+.+.....||.||..+...+ ....+|+.+..++..|+++
T Consensus 75 ~s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred hccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455789999999999999999999999999999998888888999999874221 1112366677888889988
Q ss_pred HHhhhhhcchh-h--hcccCCCCCcceee-cccCCCccCCCCCChhHHHHHHHHHhc-CceeEEEEecCCCCC--cccce
Q 011861 270 EYAERKSEHDS-L--INFGVDLMPLFVMD-VVIPCQRFPLHIFEPRYRLMVRRIMEG-NHRMGMVIIDPTTGS--VADFA 342 (476)
Q Consensus 270 ~~~~~~~~~~~-~--~~~~~~~lPl~~l~-vlfP~~~~pl~v~~~~~~~~v~~a~~~-~~~~~v~~~~~~~~~--l~~iG 342 (476)
....+...++. . ........|+|++. +.||++..|+++++++|..|+++++.. +.+|+++..+...+. .+.+|
T Consensus 155 ~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~~~~~~e~g 234 (398)
T KOG4159|consen 155 SSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSSKGSGQAAEIG 234 (398)
T ss_pred hhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHHHhhcceeeeeecccccCCcchhhhcc
Confidence 77744333321 1 11233459999877 899999999999999999999999997 679999998765554 78999
Q ss_pred eEEEEEEeeecCCceEEEEEEecceeEEeeeecCCCeeEEEEEEecCCC-C--CCcchhhhHHHHHHHHHHHHHHHHHHh
Q 011861 343 CEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDGYRVAEIEWVQDIH-P--EGVEDRADLQDLTNNAAEYARLWLRRE 419 (476)
Q Consensus 343 t~~~I~~~~~~~dG~~~V~v~G~~R~~I~~~~~~~~~~~a~v~~l~d~~-~--~~~~~~~~l~~l~~~l~~~~~~~~~~~ 419 (476)
++.+|.++..+.||+..+...|..|+|+.....+++|.+|++++++|.+ . ......+.+..++..+......|....
T Consensus 235 ~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d~y~~~~ve~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 314 (398)
T KOG4159|consen 235 CILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTDGYPVADVEYLEDRPAVKVEGHDEPETLVELMKEVVKKECLWFESV 314 (398)
T ss_pred chhhhcccccccccchhhhhhcCcceeeeeecCCCcceeeeeeeeeCcHHhhhccchhchhHHHHHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999843 1 111112223333334444344444333
Q ss_pred HHhhHHHHHHHHHHhhcccCCC-------CCCChhhhHHHHHhcCCCChHHhHhhcccCCCC
Q 011861 420 KESARQDRRRLEKLLNVEVMMP-------PSQDPERFSFWLATLSDRRPSERLELLRIRDTR 474 (476)
Q Consensus 420 ~~~~~~~~~~l~~il~~~~~~~-------~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~ 474 (476)
..... ..+...+..++ ...+...+++|....++++...+-.++.+.+..
T Consensus 315 ~~~~~------~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ 370 (398)
T KOG4159|consen 315 ADPMK------GRLLVHFGCMPFLEINFECLESGPAWCWWKTALLPSEARLKSEFLAMRSLK 370 (398)
T ss_pred chhhh------hhhhhcccccccchhchhhhccchHHHHHHHhcCCcHHHHHHHHHhccchh
Confidence 22222 12222222222 224667889999999999999999998887754
No 7
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=8e-21 Score=177.72 Aligned_cols=125 Identities=23% Similarity=0.392 Sum_probs=120.9
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
+....|+.++.+|+.+++.++|++|+..|++||+++|+|+.+|.|||.+|.++|.| .
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-----------------------~ 132 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-----------------------E 132 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-----------------------H
Confidence 56778999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhh
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~ 189 (476)
.|++||+.|+.+||.+.++|.++|.+|+.+|+|++|+..|+++|+++|+|+..++.++.+++.+.+..
T Consensus 133 ~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 133 DAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988887765
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.9e-16 Score=155.87 Aligned_cols=117 Identities=29% Similarity=0.477 Sum_probs=112.4
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+...+.+|+.+|+.|||..|+.+|++||..+|+|+.+|+|||.||.++|.+ ..|++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~-----------------------~~aL~ 413 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY-----------------------PEALK 413 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH-----------------------HHHHH
Confidence 3677888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
|+.++++++|++.++|+++|.++..+++|+.|++.|++++++||++..+...+.++..+.
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888887765
No 9
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-15 Score=137.14 Aligned_cols=204 Identities=22% Similarity=0.331 Sum_probs=162.4
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
+.....+..+.++|+.+|....|..||++|.+||.++|+.+.+|.|||.||+++.+|
T Consensus 4 ~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~----------------------- 60 (284)
T KOG4642|consen 4 PEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW----------------------- 60 (284)
T ss_pred cccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh-----------------------
Confidence 344556788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC-----CCchhhHHHHHHHHh-----------
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP-----FSNPLQASLQNLERT----------- 184 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p-----~~~~~~~~~~~~~~~----------- 184 (476)
+.+..++.+|++++||..+++|.+|.+++....|++|+..+++++.+-. .-.++...+..+++.
T Consensus 61 ~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 61 EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999966421 122233333222210
Q ss_pred --------------------hhhhhcc---------------------------------cCCCCCCCCccccccccccc
Q 011861 185 --------------------TASLIGR---------------------------------RIHGTPERTDDFDCTLCLKL 211 (476)
Q Consensus 185 --------------------~~~~~~~---------------------------------~~~~~~~~~~~~~C~iC~~~ 211 (476)
++....+ ........++.+.|.|.+++
T Consensus 141 Q~~El~~yl~slie~~~~~~~s~~~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgkIt~el 220 (284)
T KOG4642|consen 141 QELELHSYLESLIEGDRERELSEWQENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGKITLEL 220 (284)
T ss_pred HHhhHHHHHHHHhccchhhHHHHHHHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhHHh
Confidence 0100000 01123334556667899999
Q ss_pred ccCcEEccCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 212 LYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 212 ~~~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
+.+|+..|.|-+|-+.-|..++.+ +...|..|.++. +..+.+|..|+..|..|+..
T Consensus 221 ~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lt--e~q~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 221 MREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLT--EYQLIPNLALKEVIAAFLKE 277 (284)
T ss_pred hcCCccCccccchhHHHHHHHHHHhccCCchhcccCC--HHhhccchHHHHHHHHHHHh
Confidence 999999999999999999999884 556899999874 46778899999988777543
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-15 Score=151.61 Aligned_cols=113 Identities=35% Similarity=0.461 Sum_probs=110.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..++++||..|..|||+.||.+|++||.++|.++.+|+||+.+|..+|+| .+|++|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~-----------------------~~al~d 58 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSY-----------------------EKALKD 58 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhH-----------------------HHHHHH
Confidence 567889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
..+.++++|+|+++|+++|.++..+|+|++|+..|.++|+.+|+|+.+..++.++.
T Consensus 59 a~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 59 ATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999887
No 11
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=6.4e-15 Score=129.99 Aligned_cols=123 Identities=25% Similarity=0.366 Sum_probs=113.9
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC-----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
..++..++..||.+|..|+|++|.+-|+.||.+.|.- +.+|.|||.|+++++.|
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--------------------- 150 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--------------------- 150 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH---------------------
Confidence 3457789999999999999999999999999999975 48999999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhh
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~ 189 (476)
..|+.+|.+||+++|.+.+|+.++|.+|-.+.+|++|+.+|++.++++|....++....++...+...+
T Consensus 151 --e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 151 --ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERN 219 (271)
T ss_pred --HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888888776665544
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.3e-14 Score=141.56 Aligned_cols=126 Identities=25% Similarity=0.402 Sum_probs=115.7
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---------------cccccchhHHHHHHHhhhccCCCCCc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSAS 106 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 106 (476)
+....|....+.||.+|+.|+|..|+..|.+|+..-..+ ..+|.|+|.||++++.|
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~--------- 273 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY--------- 273 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---------
Confidence 467788899999999999999999999999998874422 28899999999999999
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 107 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
.+|+..|+++|+++|+|.+|+|++|.|+..+|+|+.|+.+|+++++++|+|+++...+..+.+...
T Consensus 274 --------------~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 274 --------------KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred --------------HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred hhhc
Q 011861 187 SLIG 190 (476)
Q Consensus 187 ~~~~ 190 (476)
....
T Consensus 340 ~~~~ 343 (397)
T KOG0543|consen 340 EYEE 343 (397)
T ss_pred HHHH
Confidence 6543
No 13
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.57 E-value=8.3e-15 Score=138.78 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=111.4
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
......-.++++||.||++|+|++||.||++++..+|.++..|.|||.+|+++.+| .
T Consensus 92 ~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F-----------------------A 148 (536)
T KOG4648|consen 92 QLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF-----------------------A 148 (536)
T ss_pred HHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH-----------------------H
Confidence 34455667899999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
.|..||..|+.+|-.+.++|.++|.+-..+|...+|..+++.+|++.|.+.++......+...+
T Consensus 149 ~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 149 QAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 9999999999999999999999999999999999999999999999999888877666654433
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.9e-14 Score=142.04 Aligned_cols=127 Identities=25% Similarity=0.389 Sum_probs=108.4
Q ss_pred CCCCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCC
Q 011861 37 GSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
.....+..+.+.+++.+||.+|+.|+|++||++|++||+++|+.+.+|+|||.||..+|+|
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~------------------- 165 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDW------------------- 165 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhH-------------------
Confidence 3344456677889999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC-CCchhhHHHHHHHHhhh
Q 011861 117 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP-FSNPLQASLQNLERTTA 186 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p-~~~~~~~~~~~~~~~~~ 186 (476)
.+.++++.+|++++|++.++++|++.++-.+|++.+|+.+.....-+.. .|..+...+.++-+.++
T Consensus 166 ----~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 166 ----EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred ----HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999886554443 34444444444444443
No 15
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.53 E-value=3.2e-14 Score=143.16 Aligned_cols=119 Identities=26% Similarity=0.417 Sum_probs=113.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+..+|+.+|..|+|++|+.+|++|++++|+++.+|.+||.+|..+|++ ++|+.+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-----------------------~eAl~~ 58 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-----------------------TEAVAD 58 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 346888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
+++|++++|+++.+|+++|.+|+.+|+|++|+..|+++++++|++..+...+..++..+...
T Consensus 59 ~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 59 ANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998888654
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=1.5e-13 Score=120.21 Aligned_cols=116 Identities=12% Similarity=0.165 Sum_probs=109.3
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+...|..++..|+|++|+..|.+++.++|.++.+|.++|.++..+|++ ++|+..|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~y~ 82 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-----------------------TTAINFYG 82 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----------------------HHHHHHHH
Confidence 3566899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
++++++|+++.+++++|.++..+|++++|+..|.++++++|++.........++..+..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887777666544
No 17
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.5e-13 Score=128.21 Aligned_cols=125 Identities=23% Similarity=0.359 Sum_probs=114.8
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
-..+..+.+.+.||..|+.|+|..|-++|++||.++|++ +.+|.|||.++.++|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-------------------- 303 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-------------------- 303 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc--------------------
Confidence 344567788999999999999999999999999999986 47899999999999999
Q ss_pred chHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
.+|+.+|+.|+.+||...++|.++|.|++.+++|++|.++|++++++..+ ...+..+.+++..|.+...
T Consensus 304 ---~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 304 ---REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred ---hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998866 7788888888888877654
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.39 E-value=7.2e-13 Score=131.78 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=116.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+..+|+.+|..++|+.|+..|++||+++|+.+.++.+||++|++.++| ..|+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~-----------------------~~Al~ 59 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF-----------------------GGALH 59 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechh-----------------------hhHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~ 189 (476)
|+.+|++++|...++|+++|.+++.+++|.+|+.+|+....+.|+++.+...+.++++.+.+..
T Consensus 60 Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 60 DALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999888754
No 19
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=3.5e-12 Score=110.07 Aligned_cols=118 Identities=10% Similarity=0.111 Sum_probs=110.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+......|..++..|++++|+..|++++..+|.++.++.++|.+|..+|++ ++|+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 72 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-----------------------EEAID 72 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----------------------HHHHH
Confidence 4566889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
.++++++++|+++..++.+|.++...|++++|+..|+++++++|++.........+.+.+.
T Consensus 73 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 73 AYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877777766553
No 20
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=9.7e-12 Score=107.84 Aligned_cols=121 Identities=9% Similarity=-0.021 Sum_probs=108.5
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
...+.++..|..++..|++++|...|.-...++|.++..|+++|.++..+|+| .+|+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-----------------------~~AI 89 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-----------------------GEAI 89 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 45667888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
..|.+|+.++|+++.++++.|.|++.+|+.+.|++.|+.++.....++.-....++.+..++..
T Consensus 90 ~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 90 YAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988755555555555565555543
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.28 E-value=1.9e-11 Score=112.84 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=103.9
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHH-HHHHh--hhccCCCCCcccCCCCCCCCcchH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-IRISQ--FLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
..++..+...|..+...|++++|+..|.+|++++|+++.++.++|.++ ...|+ +
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~----------------------- 126 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT----------------------- 126 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc-----------------------
Confidence 345678899999999999999999999999999999999999999985 67777 5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|.+.++++++++|++..+++.+|.+++..|+|++|+..++++++++|.+.+-...++.+
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI 187 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877655544443
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.8e-11 Score=120.41 Aligned_cols=106 Identities=19% Similarity=0.145 Sum_probs=102.1
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..+...|++++|+..|++|++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 118 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF-----------------------DAAY 118 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 44677999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
..++++++++|++..+++++|.++...|++++|+..|+++++++|+++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999999873
No 23
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.5e-11 Score=112.38 Aligned_cols=107 Identities=26% Similarity=0.443 Sum_probs=97.9
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
..|..+++.||.||+..+|..|+..|+++|+-.-.|+ .+|.|||.|.+.+|+|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny----------------------- 135 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY----------------------- 135 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH-----------------------
Confidence 4688999999999999999999999999999866654 8899999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
..|+.||.+|+.++|.+.++|++-|.|++.+.++.+|..+...+++++-..+.+
T Consensus 136 Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 136 RSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999998876444443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=7.8e-11 Score=127.72 Aligned_cols=106 Identities=29% Similarity=0.405 Sum_probs=99.0
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..++++|+.+|+.|+|++||..|++++++.|+ +.+|.++|.||..+|+| ++|
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~-----------------------~~A 179 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDW-----------------------EKV 179 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCH-----------------------HHH
Confidence 445778999999999999999999999999999995 78999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+.++.+|++++|++.++++++|.+|..+|+|++|+.+|..++.+++.+..
T Consensus 180 i~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 180 VEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 99999999999999999999999999999999999999988887766554
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.17 E-value=8e-11 Score=119.49 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=92.0
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.++...|-.|-++|++++||.+|++||+++|+.+++|+|+|..|-.+|+- ..|+.+|
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-----------------------~~A~q~y 445 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-----------------------SAAIQCY 445 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-----------------------HHHHHHH
Confidence 34455667777888888888888888888888888888888888888888 8999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
.+|+.++|.+.++|.++|.+|...|..++|++.|+.+|+++|+.+++.-++
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 999999999999999999999999999999999999999999888875444
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.16 E-value=4.1e-11 Score=121.56 Aligned_cols=115 Identities=26% Similarity=0.274 Sum_probs=90.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+.++...|+.|-..+.|++|+.+|.+|+.+.|+.+.+|.|+|.+|+..|+. +-||..
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l-----------------------dlAI~~ 308 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL-----------------------DLAIDT 308 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH-----------------------HHHHHH
Confidence 355666777777777777777777777777777777777777777777777 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
|++|++++|+++.+|.++|.++-..|+..+|.+.|+++|.+.|+.++++.++..+...
T Consensus 309 Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 309 YKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred HHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888887777665443
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=2e-10 Score=109.46 Aligned_cols=116 Identities=17% Similarity=0.279 Sum_probs=107.7
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
....+....+.|+.++..|+|..|+.+|-.|++.+|++..+++.||.+|+.+|+- ..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-----------------------k~ 90 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-----------------------KA 90 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-----------------------cc
Confidence 3456888999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|+.|+.+++++.|++..+...+|.+++..|+++.|.++|...++.+|++....+...++
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999777665544443
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=1.1e-10 Score=88.37 Aligned_cols=67 Identities=27% Similarity=0.461 Sum_probs=64.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH-hhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
++..+...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+| ++ .+|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~-----------------------~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY-----------------------EEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH-----------------------HHHH
Confidence 47789999999999999999999999999999999999999999999999 89 9999
Q ss_pred HHHHHHhhccc
Q 011861 125 KDAEKLLNLQS 135 (476)
Q Consensus 125 ~~~~~al~l~p 135 (476)
++++++++++|
T Consensus 59 ~~~~~al~l~P 69 (69)
T PF13414_consen 59 EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHcCc
Confidence 99999999998
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=5.1e-10 Score=101.70 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=100.4
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
.+....+....+.|-.|+.+||+..|...+.+||+.||++..+|..||.+|.+.|+.
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------------------- 85 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------------------- 85 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-----------------------
Confidence 445556778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+.|-+.|++|+.++|++...+.+.|.-++..|+|++|...|.+++. +|...
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~ 136 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYG 136 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCC
Confidence 9999999999999999999999999999999999999999999987 45443
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.09 E-value=1.2e-10 Score=86.62 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=55.1
Q ss_pred ccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHh
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~ 266 (476)
++.|++|.+.+.+|+.++|||+||+.||.+|+.....||.|+..+. ..++..|..+++.+++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~--~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT--HEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC--hhhceeCHHHHHHHHhC
Confidence 3689999999999999999999999999999988778999999873 36778888888887654
No 31
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.09 E-value=4.9e-10 Score=93.82 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=99.2
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...++..|..++..|+|++|+..|.+++..+|++ +.+++.+|.+++..|++ +.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A 58 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY-----------------------ADA 58 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH-----------------------HHH
Confidence 3567889999999999999999999999999876 46899999999999999 999
Q ss_pred HHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 124 LKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 124 ~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
+..+.+++..+|++ +.+++.+|.++..+|++++|...+.++++..|++..+....
T Consensus 59 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 59 AKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999885 67899999999999999999999999999999987765543
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.06 E-value=1.1e-10 Score=89.24 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=55.2
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
++.|.|+|+.++|.+||.++|||+|++.||.+|+.. +..||.|+..+. ..++..|..|++.+++|..+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~--~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS--ESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S--GGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC--cccceECHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999997 778999999874 36788999999999888643
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.04 E-value=1.9e-09 Score=84.58 Aligned_cols=99 Identities=28% Similarity=0.447 Sum_probs=93.8
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+...|..++..|++++|+..+.++++..|++..++..+|.++...+++ ++|++.+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-----------------------EEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-----------------------HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
+++.+.|.+..+++.+|.++...|+++.|...+.++++.+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999988763
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=4.2e-10 Score=115.70 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=109.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
.+.|-..||-+-.+++++.||++|.+|+++||+++-+|..+|-=+.....| +.|...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~-----------------------d~a~~~ 477 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF-----------------------DKAMKS 477 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH-----------------------HhHHHH
Confidence 467788899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
|++|+.++|.++.|||.+|.+|+..++++.|.-+|++|+++||.|..+.--+......++.
T Consensus 478 fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 478 FRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred HHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999987766665555444
No 35
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.01 E-value=2e-10 Score=77.36 Aligned_cols=38 Identities=50% Similarity=1.238 Sum_probs=30.1
Q ss_pred cccccccccCcEEccCCCcccHhhHHHhhhcC----CCCccc
Q 011861 205 CTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG----NKCPLC 242 (476)
Q Consensus 205 C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~----~~Cp~c 242 (476)
|+||++++.+|++++|||+||..||.+++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999988732 358887
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=4.1e-10 Score=85.17 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=64.9
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhh-hHHHHH
Q 011861 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMAR 158 (476)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~ 158 (476)
++.+|.++|.+++..|+| ++|+..|.++++++|+++.+|+++|.++..+| ++++|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~ 58 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-----------------------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAI 58 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-----------------------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHH
Confidence 567899999999999999 99999999999999999999999999999999 899999
Q ss_pred HHHhcccccCC
Q 011861 159 DAILSGLQVDP 169 (476)
Q Consensus 159 ~~~~~~l~l~p 169 (476)
.+++++++++|
T Consensus 59 ~~~~~al~l~P 69 (69)
T PF13414_consen 59 EDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHcCc
Confidence 99999999998
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.99 E-value=1.5e-09 Score=117.80 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=104.2
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|++++|+..|.++++++|++...|.++|.++..+|++ ++|+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~-----------------------~eA~ 385 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP-----------------------DKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34456777889999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..++++++++|+++.+|+.+|.++..+|+|++|+..|+++++++|++......+..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987766544443
No 38
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.98 E-value=2.3e-10 Score=109.26 Aligned_cols=119 Identities=18% Similarity=0.340 Sum_probs=107.3
Q ss_pred CCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 39 LPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 39 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
++.+...++.....++...+..|+++.||.+|+.||.++|..+.+|..||.++++++++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp--------------------- 164 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP--------------------- 164 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCC---------------------
Confidence 33466677888888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..|++||..|+++||+..+.|-++|.+...+|.|++|..++..+++++ .+..+...+..+
T Consensus 165 --~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld-~dE~~~a~lKeV 224 (377)
T KOG1308|consen 165 --NAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD-YDEANSATLKEV 224 (377)
T ss_pred --chhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc-ccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987 445555555444
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.6e-09 Score=107.65 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=103.1
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.....+.++...|.-+|..|++..|-..++++|+++|.+...|..||.+|....+. .
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-----------------------~ 377 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-----------------------E 377 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-----------------------H
Confidence 34455888999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+..+++.+|.++||.++..|+.+|+.++-+++|++|+.+|+++..++|++.-
T Consensus 378 ~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 378 KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 9999999999999999999999999999999999999999999999998764
No 40
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.6e-09 Score=96.00 Aligned_cols=122 Identities=25% Similarity=0.350 Sum_probs=104.4
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCc----------ccccchhHHHHHHHhhhccCCC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDP----------IVLGNRSSAYIRISQFLKHRPP 103 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~----------~~~~~~a~~~~~~~~~~~~~~~ 103 (476)
+..+.+..+.++||.+|+.|+|.+|+..|.+|+-. .|.++ .++.|.++|++..|+|
T Consensus 173 eKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~------ 246 (329)
T KOG0545|consen 173 EKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY------ 246 (329)
T ss_pred HhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH------
Confidence 44455668889999999999999999999999643 56654 7899999999999999
Q ss_pred CCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch-hhHHHHHHH
Q 011861 104 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP-LQASLQNLE 182 (476)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~-~~~~~~~~~ 182 (476)
-++++.+...+...|.|.+|||++|.+....=+..+|..+|..+|+++|.-.. +...++.++
T Consensus 247 -----------------yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le 309 (329)
T KOG0545|consen 247 -----------------YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE 309 (329)
T ss_pred -----------------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997554 344455554
Q ss_pred Hhhh
Q 011861 183 RTTA 186 (476)
Q Consensus 183 ~~~~ 186 (476)
...+
T Consensus 310 ~r~~ 313 (329)
T KOG0545|consen 310 NRMA 313 (329)
T ss_pred HHHH
Confidence 4443
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.95 E-value=7.4e-10 Score=87.39 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=74.2
Q ss_pred HhccHHHHHHHHHHHhccCCC--CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 011861 59 RESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (476)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (476)
.+|+|++|+..|.++++.+|+ +..++..+|.||+++|+| ++|+..+++ .+.+|.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-----------------------~~A~~~~~~-~~~~~~ 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-----------------------EEAIELLQK-LKLDPS 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-----------------------HHHHHHHHC-HTHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHH-hCCCCC
Confidence 368999999999999999995 567888899999999999 999999999 999999
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 137 SMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
+...++.+|.++..+|+|++|+..|+++
T Consensus 57 ~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 57 NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999999998864
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.90 E-value=5.2e-09 Score=117.30 Aligned_cols=113 Identities=9% Similarity=-0.054 Sum_probs=102.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..+.+.|++++|+..|.+++.++|+++.++.++|.++...|++ ++|+..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-----------------------eeAi~~ 665 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-----------------------AQSREM 665 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 455677888899999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
+++|++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+......+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999988775444433
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=8.9e-09 Score=97.62 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=105.2
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
.....+..++..|..++..|+|++|+..|.+++..+|+++ .+++.+|.+|...|++
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~--------------------- 86 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY--------------------- 86 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH---------------------
Confidence 3456678899999999999999999999999999999886 6889999999999999
Q ss_pred hHHHHHHHHHHHhhccccchH---HHHHHHHHHHhh--------hhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 119 HAELALKDAEKLLNLQSNSMK---SHLLKANALILL--------ERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|+..++++++.+|+++. +++.+|.++... |++++|+..|++++..+|++......+..+
T Consensus 87 --~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 87 --AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred --HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 9999999999999998876 799999999876 999999999999999999998766555444
No 44
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.88 E-value=6.8e-09 Score=93.69 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=96.6
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
.....+..+...|..++..|+|++|+.+|.++++..|+. ..++.++|.+|.++|++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~--------------------- 88 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH--------------------- 88 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH---------------------
Confidence 345667889999999999999999999999999987754 46899999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhh--------------HHHHHHHHhcccccCCCC
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLER--------------YDMARDAILSGLQVDPFS 171 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~l~l~p~~ 171 (476)
++|+..+.++++++|++..++..+|.++...|+ |++|++.+++++.++|++
T Consensus 89 --~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 89 --DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred --HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999999999988877 688888888888888877
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=98.87 E-value=6.7e-09 Score=111.06 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=88.7
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.+++++|+..+.+|++++|+++.+|..+|.++...|++ ++|+..+++|++++|+++.
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~~~Al~l~P~~~~ 373 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY-----------------------IVGSLLFKQANLLSPISAD 373 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHHhCCCCHH
Confidence 35689999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 140 SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
+|+.+|.++...|++++|+..++++++++|.+....
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 999999999999999999999999999999987643
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.9e-09 Score=108.69 Aligned_cols=121 Identities=18% Similarity=0.203 Sum_probs=101.2
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
.++..+|+-.|..|+++++|+.|.-+|.+|++++|.+..+....|.++.++|+. ++|
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~-----------------------d~A 542 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK-----------------------DKA 542 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh-----------------------hHH
Confidence 455677888888888888888888888888888888888888888888888888 888
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+..+++|+-+||.++-..|.+|.++..+++|++|+..+++.-++-|++..+...+.++-+.++.
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 8888888888888888888888888888888888888888888888888877777766666554
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=1.5e-09 Score=110.03 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=90.5
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
.|-.|+..|+|++|+++|+.||..+|+|..+|..+|..+.+-.+. .+|+..|++|++
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-----------------------~EAIsAY~rALq 492 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS-----------------------EEAISAYNRALQ 492 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-----------------------HHHHHHHHHHHh
Confidence 466678889999999999999999999999999999999998899 999999999999
Q ss_pred ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 133 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
+.|.+..+.|++|.+++.+|.|.+|..+|..+|.+.+.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999998765
No 48
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=1.8e-08 Score=87.95 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=101.3
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
..+.....|-.+|.+|+|++|...|.-...++|.++..+..+|.|+..+++| ++|+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-----------------------~~Ai~ 92 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-----------------------QKACD 92 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH-----------------------HHHHH
Confidence 3567788899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.|..|.-++++++..+|+.|+|++.+|+.+.|+..|..+++ .|.+..++...+.+
T Consensus 93 ~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 93 LYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred HHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 46666555433333
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=7.3e-09 Score=110.78 Aligned_cols=113 Identities=14% Similarity=-0.052 Sum_probs=100.6
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..+...|++++|+..|.+|++++|+++.+|+++|.++...|++ ++|+.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~-----------------------~eAi~ 393 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL-----------------------EEALQ 393 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3456677888999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC-CCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD-PFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~-p~~~~~~~~~~~~ 181 (476)
.++++++++|.++.+++.++.+++..|+|++|+..++++++.+ |+++.....+..+
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 9999999999999888888888888999999999999998775 6777655555444
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=1.7e-08 Score=93.67 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=104.3
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
-+...|...++.|+|.+|+..+.+|..++|+|+.+|..+|.+|.+.|++ +.|-..|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~-----------------------~~Ar~ay~ 158 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF-----------------------DEARRAYR 158 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh-----------------------hHHHHHHH
Confidence 3444899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
+|+++.|+.+..+.++|..|+-.|+++.|...+..+....+.+..+..++..+-...
T Consensus 159 qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999887777888777776654433
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.7e-08 Score=99.94 Aligned_cols=119 Identities=20% Similarity=0.156 Sum_probs=86.8
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.+|...|..|....+...||..|..|++++|.|..+|+.+|++|--++-. --|+-.+
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh-----------------------~YaLyYf 421 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH-----------------------FYALYYF 421 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch-----------------------HHHHHHH
Confidence 34556677777777777777777777777777777777777777777777 7777777
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhh
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~ 189 (476)
++|+++-|++...|-.+|.||..+++.++|+..|.+++...-.+..+...+.++-+.+....
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 77777777777777777777777777777777777777776666666666666666555443
No 52
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.83 E-value=2.2e-08 Score=83.02 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=97.0
Q ss_pred CchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
.....+....+-.+|-.+-..|+.+.|++.|.++|.+.|.++.+|.|||+++...|+-
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~---------------------- 93 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD---------------------- 93 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----------------------
Confidence 3344566677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc----hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 120 AELALKDAEKLLNLQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
.+|+.|.++|+++..+. ..+|-.+|..|..+|+-+.|+.+|.++-++...
T Consensus 94 -e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 94 -EEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999997654 448899999999999999999999999887643
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=1.3e-08 Score=88.98 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=80.2
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....+...|..+...|+|++|+..|.++++++|+++.+++++|.++..+|++ ++|+
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-----------------------~eAi 112 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP-----------------------GLAR 112 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 35677888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLE 152 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~ 152 (476)
..|++|++++|+++..+..+|.+...++
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 54
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.7e-08 Score=93.67 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=103.7
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh-hccCCCCCcccCCCCCCCCcchHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF-LKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
+.+++.|...|..|+..|++..|...|.+|+++.|++++++...|.+++....- ++ .+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~t---------------------a~ 211 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMT---------------------AK 211 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCccc---------------------HH
Confidence 345788899999999999999999999999999999999999999998876542 22 78
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+...+++|+.+||++..+.+.+|..++..|+|.+|...++..+++.|.+.+-...++..
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 88999999999999999999999999999999999999999999999877765544443
No 55
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=3.8e-09 Score=105.41 Aligned_cols=68 Identities=25% Similarity=0.579 Sum_probs=59.0
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHh
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~ 266 (476)
......+.|++|.+.+.+|+.++|||+||..|+..++.....||.|+..+.. ..+..|..+.++++.|
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~--~~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE--SKLRSNWLVSEIVESF 88 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc--ccCccchHHHHHHHHH
Confidence 3455688999999999999999999999999999999887789999998742 4677888899999876
No 56
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=7.7e-09 Score=77.17 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=60.2
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
..|..++..|+|++|+..|.++++.+|+++.+++.+|.++...|++ ++|+..+++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY-----------------------DEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999 99999999999
Q ss_pred hccccch
Q 011861 132 NLQSNSM 138 (476)
Q Consensus 132 ~l~p~~~ 138 (476)
+++|+++
T Consensus 59 ~~~P~~p 65 (65)
T PF13432_consen 59 ELDPDNP 65 (65)
T ss_dssp HHSTT-H
T ss_pred HHCcCCC
Confidence 9999875
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.9e-08 Score=99.62 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=104.8
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
||-|--++++++|+..|++|++++|+...+|..+|-=|+.+++- ..|+..|++|+++
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-----------------------~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-----------------------HAAIESYRRAVDI 393 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc-----------------------HHHHHHHHHHHhc
Confidence 67778889999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 134 QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 134 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+|.+.+|||.+|++|--++-..=|+=+|++|+++.|+|+-++..+.++-..+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999888887665544
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.77 E-value=4.4e-08 Score=91.06 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=97.1
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
....+..+...|..++..|+|++|+..|.++++.+|++..++..+|.+|...|++ ++
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~-----------------------~~ 83 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL-----------------------EK 83 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 3345778889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
|++.++++++++|++..+++.+|.++...|++++|...+.+++...
T Consensus 84 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998754
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=2.7e-08 Score=107.59 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=103.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|......|.|++|...+..+++++|++..++.++|.++.+.+++ ++|+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~-----------------------eeA~~~ 142 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI-----------------------EAGRAE 142 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 566677888889999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
++++++.+|+++.+++.+|.++..+|+|++|...|++++.-+|+++.++.++..+-+
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888887766554433
No 60
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.3e-09 Score=96.09 Aligned_cols=49 Identities=41% Similarity=1.025 Sum_probs=43.6
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhhhc---CCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR---GNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~---~~~Cp~cr~~~~ 247 (476)
....|+|.||++.-++||.+.|||-||..||.+|+.. ...||+|+..+.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 4568999999999999999999999999999999983 345999998774
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=3.5e-08 Score=88.62 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=92.6
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
...+.+..+...|..++..|+|++|+..|.+|+.+.|+. +.+|.++|.+|...|++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~--------------------- 88 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH--------------------- 88 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH---------------------
Confidence 344567888999999999999999999999999987653 45899999999999999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHH-------hhhhHH-------HHHHHHhcccccCCCCc
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALI-------LLERYD-------MARDAILSGLQVDPFSN 172 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~~l~l~p~~~ 172 (476)
++|+..+++|+.++|.+..++..+|.++. .+|+++ +|...|++++..+|.+.
T Consensus 89 --~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 --TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred --HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999998 666666 66666667777787654
No 62
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.76 E-value=5.4e-09 Score=93.15 Aligned_cols=49 Identities=37% Similarity=0.943 Sum_probs=42.1
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhhhc----------------CCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----------------GNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~----------------~~~Cp~cr~~~~ 247 (476)
...+++|+||++.+.+|+.++|||.||..||..|+.. ...||.||..+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3457899999999999999999999999999999742 246999999873
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=2.2e-08 Score=92.40 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.++.++++..|.++++.+|+++..|..+|.+|..+|++ +.|+..|++|++++|+++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-----------------------~~A~~a~~~Al~l~P~~~~ 108 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-----------------------DNALLAYRQALQLRGENAE 108 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCCCCHH
Confidence 67889999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHH-Hhhhh--HHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 140 SHLLKANAL-ILLER--YDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 140 ~~~~~~~~~-~~~~~--~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.+..+|.++ ...|+ +++|...++++++++|++..+...+...
T Consensus 109 ~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 109 LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 999999986 67777 5999999999999999999887766544
No 64
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.75 E-value=3.5e-09 Score=99.93 Aligned_cols=66 Identities=24% Similarity=0.616 Sum_probs=57.4
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHh
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~ 266 (476)
..+.+.|.||.+.|.-|+.+||||+||..||..++.....||.|+.++.- ..++.|..+..+++.|
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E--s~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE--SDLRNNRILDEIVKSL 85 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch--hhhhhhhHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999998743 4677888888888664
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=3.6e-08 Score=94.61 Aligned_cols=112 Identities=8% Similarity=-0.081 Sum_probs=99.6
Q ss_pred HHHHHHhhHHH-HHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 47 VFDLVQKGNRA-FRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 47 ~~~~~~~g~~~-~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
....+..|..+ ++.|+|++|+..|.+.++..|++. .+++.+|.+|+..|++ ++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-----------------------~~ 198 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-----------------------DD 198 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 45667777776 667999999999999999999984 7999999999999999 99
Q ss_pred HHHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 123 ALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 123 a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|+..|.++++..|++ +.+++.+|.++..+|++++|+..|++.++..|++..+.....++
T Consensus 199 A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 199 AAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 999999999988874 66999999999999999999999999999999988776655554
No 66
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.74 E-value=1.5e-08 Score=81.42 Aligned_cols=44 Identities=14% Similarity=0.385 Sum_probs=38.0
Q ss_pred CCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCc--eeEEEEec
Q 011861 289 MPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNH--RMGMVIID 332 (476)
Q Consensus 289 lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~--~~~v~~~~ 332 (476)
+|++|++ ++|||++.|+.++++++++++++++..++ .++++.+.
T Consensus 2 lpviPl~~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~~ 49 (92)
T smart00464 2 LPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQD 49 (92)
T ss_pred ceEEEcCCCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 7899998 99999999999999999999999998876 45555553
No 67
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=5.8e-08 Score=92.90 Aligned_cols=125 Identities=15% Similarity=0.219 Sum_probs=111.8
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCccccc----chhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLG----NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
..+++.+..+.+......++|.++++.+.+.++.+|..+.+.+ .+-.||...+++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~--------------------- 323 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF--------------------- 323 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH---------------------
Confidence 3456667788899999999999999999999999999664444 466788888899
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
.+|++.|..+++++|++..++-.+|.+|+.-..|++|+.+|+++++++++|..++.+++.+++...+.-+
T Consensus 324 --~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k 393 (504)
T KOG0624|consen 324 --GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK 393 (504)
T ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999887766544
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.73 E-value=1.4e-08 Score=75.83 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=59.9
Q ss_pred chhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 86 NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
.+|..++..|+| ++|++.++++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 2 ~~a~~~~~~g~~-----------------------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDY-----------------------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHH-----------------------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 011861 166 QVDPFSN 172 (476)
Q Consensus 166 ~l~p~~~ 172 (476)
+++|+++
T Consensus 59 ~~~P~~p 65 (65)
T PF13432_consen 59 ELDPDNP 65 (65)
T ss_dssp HHSTT-H
T ss_pred HHCcCCC
Confidence 9999874
No 69
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=8.2e-09 Score=68.60 Aligned_cols=38 Identities=47% Similarity=1.351 Sum_probs=33.2
Q ss_pred cccccccccCc-EEccCCCcccHhhHHHhhhcCCCCccc
Q 011861 205 CTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLC 242 (476)
Q Consensus 205 C~iC~~~~~~P-~~~~cgh~fC~~Cl~~~~~~~~~Cp~c 242 (476)
|+||++.+.+| +.++|||+||..|+.+++.....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 78999999999 578999999999999999987889987
No 70
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=6.4e-08 Score=95.71 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.+++..+.+++++||+|..+|..+|.++..+|+|++|++.+.++++.||.|..++.....+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 4566777777777777777777777777777777777777777777777777766555444
No 71
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.71 E-value=2.4e-08 Score=87.97 Aligned_cols=113 Identities=22% Similarity=0.243 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHH
Q 011861 62 NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSH 141 (476)
Q Consensus 62 ~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~ 141 (476)
-|+.|.+.|...+..+|.|++.+.+=|.+++.+.++ ++ |.+...+.++|+.-++.|+.++|+...++
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf-----k~--------g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF-----KQ--------GPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-----S---------HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc-----cC--------cchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 378899999999999999999999999999999998 00 11222445999999999999999999999
Q ss_pred HHHHHHHHhhhh-----------HHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 142 LLKANALILLER-----------YDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 142 ~~~~~~~~~~~~-----------~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+.+|.+|...+. |+.|...|+++...+|+|...+..++...|+-.-
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~l 129 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPEL 129 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHH
Confidence 999999987654 8899999999999999999999988887665443
No 72
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.71 E-value=4.3e-08 Score=110.08 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=94.1
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
.....|++++|+..|.++++++|+ +.+|.++|.++.++|++ ++|+..++++++++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~-----------------------deA~~~l~~AL~l~P 640 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV-----------------------PAAVSDLRAALELEP 640 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCC
Confidence 334559999999999999999996 89999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+...+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999998877666554433
No 73
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=8.5e-09 Score=96.16 Aligned_cols=50 Identities=38% Similarity=0.868 Sum_probs=45.3
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 248 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~ 248 (476)
......|.+|++...+|.-+||||.||..||..|......||+||..+.+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 44568999999999999999999999999999999988889999998743
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.70 E-value=8.7e-08 Score=89.06 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=98.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++ ++|+..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~-----------------------~~A~~~ 121 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY-----------------------EQAMQQ 121 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 456677899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 127 AEKLLNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 127 ~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+.++++.. +.....++.+|.++...|++++|...+.++++.+|.+......+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 99999864 45677888999999999999999999999999999877655544333
No 75
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.67 E-value=6.1e-08 Score=105.63 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=58.3
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH----HHHHHHH
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL----ALKDAEK 129 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~ 129 (476)
|..++..|++++|+..|.++++.+|+++.++.++|.+|...|++ ++ |+..+++
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~-----------------------~eA~~~A~~~~~~ 275 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS-----------------------REAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc-----------------------hhhHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666665 42 4555555
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
+++++|++..++..+|.++...|++++|+..++++++++|++..+.
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5555555555555555555555555555555555555555555443
No 76
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1e-07 Score=81.92 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=86.0
Q ss_pred HHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHH
Q 011861 68 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 147 (476)
Q Consensus 68 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~ 147 (476)
..|.+++..+|++..+...+|.+++..|++ ++|+..+++++.++|++..+++.+|.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~~~~~~~~p~~~~~~~~la~~ 60 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY-----------------------DEALKLFQLLAAYDPYNSRYWLGLAAC 60 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 468899999999999999999999999999 999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 148 LILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 148 ~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
+...|++++|...+.++++++|.+......+..+..
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 999999999999999999999999887766555433
No 77
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.63 E-value=1.1e-07 Score=72.49 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=65.1
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
.+.+++.++|++|+..+++++.++|+++.++..+|.+|..+|++ .+|+.+++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-----------------------~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY-----------------------EEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-----------------------HHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHH
Q 011861 134 QSNSMKSHLLKAN 146 (476)
Q Consensus 134 ~p~~~~~~~~~~~ 146 (476)
+|++..+...++.
T Consensus 59 ~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 59 SPDDPDARALRAM 71 (73)
T ss_pred CCCcHHHHHHHHh
Confidence 9999887766553
No 78
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.62 E-value=1.1e-07 Score=103.70 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=89.4
Q ss_pred HHHHHHhhHHHHHhccHHH----HHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 47 VFDLVQKGNRAFRESNFEE----AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~----Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
...+...|..++..|++++ |+..|.++++++|+++.++.++|.++...|++ ++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-----------------------~e 302 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-----------------------EK 302 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 3445557888888888885 78899999999999888999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
|+..++++++++|+++.+++.+|.++...|++++|+..|.++++.+|++...
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 9999999999999988888889999989999999999999888888877543
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.62 E-value=1.9e-07 Score=85.22 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=101.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..|...|+.+.|-+.|.+|+.++|++.+++.|.|.-+...|+| ++|...
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~-----------------------~eA~q~ 125 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP-----------------------EEAMQQ 125 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh-----------------------HHHHHH
Confidence 456777888899999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 127 AEKLLNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 127 ~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|++|+..- |..+..+-++|.|-+..|+++.|..+|+++++++|+++.....+.+.
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 99998752 55677999999999999999999999999999999999876655554
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.61 E-value=5e-08 Score=95.13 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=83.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
..-+...|..+.+.|++++|+..|.+|++++|+++.+...++.++...|++ .++.+.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~-----------------------~~~~~~ 202 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY-----------------------DEAREA 202 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh-----------------------HHHHHH
Confidence 345566777778888888888888888888888888888888888877887 776666
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
+....+..|+++..+..+|.++..+|++++|+..|+++++.+|+|+.....+..+-...
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred HHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence 66666666777777778888888888888888888888888888887776666554333
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=8.4e-08 Score=94.37 Aligned_cols=98 Identities=17% Similarity=0.072 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHhcc---CCC-CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 011861 61 SNFEEAISNYSRANNI---KPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~---~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (476)
+..+.+|..++++|.. +|. .+.+|+++|.+|..+|++ .+|+.+|+++++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~Al~l~P~ 96 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR-----------------------ALARNDFSQALALRPD 96 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHcCCC
Confidence 3668899999999964 333 368899999999999999 9999999999999999
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 137 SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++.+|+.+|.++...|+|++|+..|.++++++|++..+...+..+
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998877655544
No 82
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.60 E-value=1.6e-08 Score=88.41 Aligned_cols=120 Identities=21% Similarity=0.413 Sum_probs=90.3
Q ss_pred HHhhccccchHHHHHHHHH-HHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhcccCCCCCCCCccccccc
Q 011861 129 KLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTL 207 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~i 207 (476)
..+...|+-.+-|-..|.+ |....+|...+++|..++++|..+..- .+.. .....+...-.|.|.|
T Consensus 135 ~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~KtGWkLn~EWnA~------~Ee~-------~v~~~~~e~IPF~C~i 201 (259)
T COG5152 135 EVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKTGWKLNQEWNAE------YEEA-------PVISGPGEKIPFLCGI 201 (259)
T ss_pred ceeecCcccccchhhcccccCCchhhhhhhhhhhhcccccchhhcch------hhhc-------ccccCCCCCCceeehh
Confidence 3456678888888888888 457889999999999999999887731 1111 0111112223679999
Q ss_pred ccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHH
Q 011861 208 CLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQ 264 (476)
Q Consensus 208 C~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~ 264 (476)
|...+.+||.+.|||+||..|....+..+..|-.|..... ..+.+...+..++.
T Consensus 202 CKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~---G~f~V~~d~~kmL~ 255 (259)
T COG5152 202 CKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY---GRFWVVSDLQKMLN 255 (259)
T ss_pred chhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc---cceeHHhhHHHHHh
Confidence 9999999999999999999999999999999999998754 34555555555553
No 83
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.60 E-value=3.1e-07 Score=78.58 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=92.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..+|...++.|+|.+|++.+.......|... .+...++.+|++.++| .+|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-----------------------~~A 66 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-----------------------EEA 66 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 57799999999999999999999999999988654 7888999999999999 999
Q ss_pred HHHHHHHhhccccchH---HHHHHHHHHHhhhh---------------HHHHHHHHhcccccCCCCchhhH
Q 011861 124 LKDAEKLLNLQSNSMK---SHLLKANALILLER---------------YDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~---~~~~~~~~~~~~~~---------------~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
+..+++-++++|+++. ++|.+|.+++.... ...|..+|+..+..-|++.-+..
T Consensus 67 ~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 67 IAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999999999999876 88999999998876 66777777777777776655443
No 84
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.60 E-value=2e-08 Score=68.74 Aligned_cols=40 Identities=43% Similarity=1.113 Sum_probs=34.6
Q ss_pred cccccccccc---CcEEccCCCcccHhhHHHhhhcCCCCcccc
Q 011861 204 DCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCR 243 (476)
Q Consensus 204 ~C~iC~~~~~---~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr 243 (476)
+|+||++.+. .++.++|||.||..|+.+|+.....||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999884 446689999999999999999888999997
No 85
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.59 E-value=3.3e-08 Score=69.64 Aligned_cols=45 Identities=36% Similarity=0.971 Sum_probs=40.5
Q ss_pred ccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
+..|.+|++...+++.+||||. ||..|+.+++.....||.||+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhh
Confidence 5689999999999999999999 99999999999888999999976
No 86
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.58 E-value=2.4e-08 Score=71.73 Aligned_cols=59 Identities=31% Similarity=0.867 Sum_probs=32.0
Q ss_pred cccccccccccccCcEE-ccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHH
Q 011861 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSII 263 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~-~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~ 263 (476)
..+.|++|...+.+|+. ..|.|+||+.|+...+. ..||+|..+... +++..|..|.+++
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~--qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI--QDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S---SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHH--HHHHhhhhhhccC
Confidence 35689999999999986 59999999999977554 459999987632 6888998888764
No 87
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.58 E-value=3.4e-08 Score=91.99 Aligned_cols=48 Identities=31% Similarity=0.891 Sum_probs=41.0
Q ss_pred CcccccccccccccCc--------EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEP--------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P--------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..+.+|+||++.+.++ +..+|||.||..||.+|+.....||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 4567999999987653 45689999999999999998889999999873
No 88
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-07 Score=92.91 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=99.3
Q ss_pred ccCCCCCCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCC
Q 011861 33 NEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 112 (476)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (476)
..+.-+.+.+....+...+..|+.++++.+|..|+..|+.||.++|+++..|.+||..++.+++|
T Consensus 35 ~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~--------------- 99 (486)
T KOG0550|consen 35 TSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRF--------------- 99 (486)
T ss_pred cCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhH---------------
Confidence 34444455677788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHh
Q 011861 113 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 113 ~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
.+|+-++++.++++|...+++.+.++++..+++..+|-..++
T Consensus 100 --------~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 100 --------EEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred --------hhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988777
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=6.1e-07 Score=84.98 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=91.2
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc---cccchhHHHHHH--------HhhhccCCCCCcccCCCCCCCC
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRI--------SQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
..+...|..++..|++++|+..|.++++.+|+++. +++.+|.++++. |++
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~------------------- 131 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA------------------- 131 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH-------------------
Confidence 46788899999999999999999999999999887 689999999887 778
Q ss_pred cchHHHHHHHHHHHhhccccchHHH-----------------HHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 117 TTHAELALKDAEKLLNLQSNSMKSH-----------------LLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
.+|++.++++++.+|++..++ +.+|..++..|++.+|+..|.++++..|+++.
T Consensus 132 ----~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 132 ----REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred ----HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 999999999999999986542 46788889999999999999999999887653
No 90
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=3.5e-07 Score=90.49 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=100.9
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH-hhhccCCCCCcccCCCCCCCCcchHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
....+..++... +...+++++|+..++++|+++|++..+|..|+.++..+| ++ +
T Consensus 35 ~~~~a~~~~ra~--l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l-----------------------~ 89 (320)
T PLN02789 35 EFREAMDYFRAV--YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADL-----------------------E 89 (320)
T ss_pred HHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhH-----------------------H
Confidence 334444443332 455689999999999999999999999999999999998 67 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhH--HHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERY--DMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
+++..++++++.+|++..+|+.++.++..+|++ ++++..+.++++++|.|-.++....-+-..++
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988874 78899999999999999998887666655443
No 91
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=9.5e-08 Score=71.81 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=62.3
Q ss_pred HHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 011861 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (476)
++..|+|++|+..|.+++..+|++..++..+|.+|++.|++ ++|...+.+++..+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY-----------------------DEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999999999999999999 9999999999999999
Q ss_pred chHHHHHHHHH
Q 011861 137 SMKSHLLKANA 147 (476)
Q Consensus 137 ~~~~~~~~~~~ 147 (476)
++..+..++.+
T Consensus 58 ~~~~~~l~a~i 68 (68)
T PF14559_consen 58 NPEYQQLLAQI 68 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 98877777653
No 92
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.54 E-value=4.3e-07 Score=92.58 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=86.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|++++|+..|.++++.+|++..++..+|.+|.+.|++ ++|++.
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 236 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY-----------------------AAAIEA 236 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 334567788888899999999999999998888888888899999999998 888888
Q ss_pred HHHHhhccccch-HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 127 AEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 127 ~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
++++++.+|.+. .++..++.+|...|++++|+..++++++.+|++...
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL 285 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence 888888888763 466778888888888888888888888888876543
No 93
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.53 E-value=4.9e-08 Score=90.42 Aligned_cols=47 Identities=30% Similarity=0.756 Sum_probs=43.6
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
..-+.|.||.+.+..|+.++|||+||..||..++.....||.||...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 34568999999999999999999999999999999999999999875
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.1e-07 Score=91.68 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=69.8
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHh
Q 011861 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
.+.|+|-+|.+++++ .+|+..+++||.+.|.++..|-..|.+|..+|.++.|+++|.
T Consensus 457 ~~~NLGH~~Rkl~~~-----------------------~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKY-----------------------EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHhHHHHHHHHhhH-----------------------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 378889999999999 999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchhhHHHHHH
Q 011861 163 SGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 163 ~~l~l~p~~~~~~~~~~~~ 181 (476)
++|.++|+|..+...+..+
T Consensus 514 KaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 514 KALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHhcCCccHHHHHHHHHH
Confidence 9999999998776666544
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.52 E-value=3.4e-07 Score=101.71 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=104.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
.......|..+...|++++|+..+++++...|.++.++.++|.++...|++ ++|++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~-----------------------~~A~~~ 415 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP-----------------------RAAENE 415 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHH
Confidence 345567888999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++++++++|++...++.+|.++..+|+|++|...++++++.+|+++.+....+..
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876544443
No 96
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.2e-08 Score=84.47 Aligned_cols=49 Identities=35% Similarity=0.969 Sum_probs=42.3
Q ss_pred CCcccccccccccccCc--EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEP--ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P--~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....+.|++|++.+.+- +.+.|||.||+.||+..+.....||+|++.+.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 34568999999988654 56799999999999999999999999998663
No 97
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.50 E-value=9.4e-07 Score=94.11 Aligned_cols=125 Identities=16% Similarity=0.170 Sum_probs=97.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh-------hccCCCCCcccCCCCCCC--
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF-------LKHRPPSASEYRPLNGLD-- 115 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-- 115 (476)
..+..++..||.+|..|++++|...+.++|+.+|.++.+|+.+|.+|.+.|+. +.++|...+++..|.-..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999875 233344444443322111
Q ss_pred --CcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 116 --PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 116 --~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
++....+|.-.|.+|++++|.+.+.++.++..|..+|++..|+.-|.+.+.++|
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 333347777788888888888888888888888888888888888888888877
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=5.5e-07 Score=90.31 Aligned_cols=118 Identities=17% Similarity=0.112 Sum_probs=109.1
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
....+-.+..++..|++++|.+.++..+...|+|+.++..++.+++..++. ++|++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~-----------------------~~A~e~ 362 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA-----------------------KEAIER 362 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-----------------------HHHHHH
Confidence 445667788899999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+++++.++|+.+...+.+|++|+..|++.+|+..++.++.-+|+++..+..+.+.-..++.
T Consensus 363 ~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 363 LKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999988777655544
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=5.6e-07 Score=97.52 Aligned_cols=103 Identities=15% Similarity=-0.028 Sum_probs=97.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+.+....|..+.+.+++++|+..+.+++..+|+++.+++.+|.++..+|++ ++|+
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~-----------------------~~A~ 174 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS-----------------------EQAD 174 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch-----------------------HHHH
Confidence 45677788999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
..|++++..+|++..++..+|.++..+|+.++|...|+++++...+
T Consensus 175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999987543
No 100
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.49 E-value=8.8e-08 Score=64.41 Aligned_cols=38 Identities=50% Similarity=1.292 Sum_probs=34.3
Q ss_pred cccccccccCcE-EccCCCcccHhhHHHhhh--cCCCCccc
Q 011861 205 CTLCLKLLYEPI-TTPCGHSFCRSCLFQSMD--RGNKCPLC 242 (476)
Q Consensus 205 C~iC~~~~~~P~-~~~cgh~fC~~Cl~~~~~--~~~~Cp~c 242 (476)
|++|.+.+.+|+ .++|||+||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 789999999999 789999999999999998 45569987
No 101
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.49 E-value=4.2e-07 Score=105.52 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=91.0
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCC---------------
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP--------------- 116 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 116 (476)
..|..++..|++++|+..|.++++.+|+++.++..+|.+|.+.|++-+ +...++..+..++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e----A~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR----AVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 446677777777777777777777777777777777777777665521 1111111111111
Q ss_pred --------------cchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 117 --------------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 117 --------------~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
....++|+..++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1112789999999999999999999999999999999999999999999999999876654433
No 102
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.48 E-value=4.2e-07 Score=100.99 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=104.0
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..+...|++++|+..|.++++++|.++.++..+|.++...|++ ++|+.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~-----------------------~eA~~ 104 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY-----------------------DEALV 104 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3455788899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.++++++.+|++.. ++.+|.++...|++++|+..++++++++|++..+...+..+
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999998876655443
No 103
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.48 E-value=2.3e-07 Score=70.76 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=64.6
Q ss_pred hHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 88 SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 88 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
+.+|.+.++| ++|++.+++++.++|+++..++.+|.++..+|+|++|+..|+++++.
T Consensus 2 ~~~~~~~~~~-----------------------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDY-----------------------EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCH-----------------------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5688899999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHH
Q 011861 168 DPFSNPLQASLQN 180 (476)
Q Consensus 168 ~p~~~~~~~~~~~ 180 (476)
+|++.........
T Consensus 59 ~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 59 SPDDPDARALRAM 71 (73)
T ss_pred CCCcHHHHHHHHh
Confidence 9988887665544
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=4.4e-07 Score=95.09 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=95.1
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH-
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK- 125 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~- 125 (476)
+.-++..|..+..+|++.+|...|..|+.++|+.+.+...+|.++.+.|+. ..|..
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~-----------------------~la~~~ 740 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP-----------------------RLAEKR 740 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc-----------------------chHHHH
Confidence 345678899999999999999999999999999999999999999999987 55555
Q ss_pred -HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 126 -DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 126 -~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
....|+++||.++++||.+|.++...|+.+.|.+.|..++++++.+|..
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 8889999999999999999999999999999999999999999888763
No 105
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=3.3e-07 Score=92.09 Aligned_cols=126 Identities=28% Similarity=0.258 Sum_probs=109.5
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
.+....++.++++|+..|..+....||.+|.+++...|....+|.|||.++++-+-. ...
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~--------------------~d~ 427 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR--------------------GDS 427 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc--------------------ccH
Confidence 466678899999999999999999999999999999999999999999998775433 133
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
-.|+.|+..|+++||...+|||+++.++..+++|.+|++...++....|.+.+.......+.+-+.
T Consensus 428 ~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~ 493 (758)
T KOG1310|consen 428 YLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS 493 (758)
T ss_pred HHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence 789999999999999999999999999999999999999999888889988777666555544443
No 106
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.46 E-value=6.5e-07 Score=100.25 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=102.4
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..+...|..++..|++++|+..|.++++.+|++..++..+|.++...|++ ++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A 178 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF-----------------------DEA 178 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH-----------------------HHH
Confidence 345667888999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
+..++++++.+|++..+++.+|.++...|++++|...|+++++.+|.+......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887765443
No 107
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.8e-06 Score=90.21 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=123.6
Q ss_pred CCCcceee--cccCCCccCCCCCChhHHHHHHHHHhc-CceeEEEEecCC--CC-------------------------C
Q 011861 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEG-NHRMGMVIIDPT--TG-------------------------S 337 (476)
Q Consensus 288 ~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~-~~~~~v~~~~~~--~~-------------------------~ 337 (476)
.+|++|++ ++|||-.+++.|..++.++++++.+.. ..++|+++.... .+ -
T Consensus 68 ~l~~Lpi~~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~~~~~~l~ 147 (906)
T KOG2004|consen 68 RLPALPITRGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKDKLRMVLY 147 (906)
T ss_pred ccceeeccCCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccceeeeecCCcchhhhhh
Confidence 58999987 999999999999999999999998875 456777765211 00 0
Q ss_pred cccceeE---EEEEEeeecCCceEEEEEEecceeEEeeeecCC--CeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHH
Q 011861 338 VADFACE---VEITECEPLPDGRFVLEIESRRRFRILRSWDQD--GYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYA 412 (476)
Q Consensus 338 l~~iGt~---~~I~~~~~~~dG~~~V~v~G~~R~~I~~~~~~~--~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~ 412 (476)
.++.+.+ +.|.+......+.+.+.+.|..|++|.+...+. +.+..+++-+.+.+.+ .++++.++..++...+
T Consensus 148 ~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~---~~~~~ka~~~ei~~t~ 224 (906)
T KOG2004|consen 148 PHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFK---KDEEIKALTSEILKTL 224 (906)
T ss_pred hhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccC---cchHHHHHHHHHHHHH
Confidence 1222223 233322222356788888999999998877653 3556677766654432 2234888899999999
Q ss_pred HHHHHHhHHhhHHHHHHHHHHhhcccCCCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCC
Q 011861 413 RLWLRREKESARQDRRRLEKLLNVEVMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTR 474 (476)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~ 474 (476)
++++..+...... ...+.+ ....++|..|+|+.|+....+..+.|++|+..|+.
T Consensus 225 rdii~~n~l~r~~-v~~~~~-------~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~ 278 (906)
T KOG2004|consen 225 RDIIAVNSLFREQ-VATLSQ-------LIVEDNPIKLADFGAAISGAEFHELQEVLEETDIE 278 (906)
T ss_pred HHHHHhhHHHHHH-HHHHHH-------HhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHH
Confidence 9888877644432 111111 23448899999999999999999999999999875
No 108
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.41 E-value=1.2e-06 Score=92.31 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=90.6
Q ss_pred hHHHHHHhhHHHHHhcc---HHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccC----CCCCcccCC-----CCC
Q 011861 46 HVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHR----PPSASEYRP-----LNG 113 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~-----~~~ 113 (476)
.+..++.+|..++..++ +.+|+.+|.+|++++|+++.+|..+|.+|.....+.-.. .....+.+. ...
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 46778889998887655 889999999999999999999999999987765541000 000000111 011
Q ss_pred CCCcch------------HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 114 LDPTTH------------AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 114 ~~~~~~------------~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
.++..+ -++|...+++|++++| +..+|..+|.++...|++++|.+.|.+|+.++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 111111 1778888888888888 4678888888888888888888888888888888775
No 109
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.40 E-value=2.1e-06 Score=79.65 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=92.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.+..++..|..+|..|+|.+|+..|++.+...|+.+ .+...+|.+|++.|+| ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y-----------------------~~ 60 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY-----------------------EE 60 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H-----------------------HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH-----------------------HH
Confidence 467899999999999999999999999999988764 8889999999999999 99
Q ss_pred HHHHHHHHhhccccchH---HHHHHHHHHHhhh-----------hHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMK---SHLLKANALILLE-----------RYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~---~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
|+..+++.++..|+++. ++|.+|.+++... ...+|+..|+..++..|+++-+......+.
T Consensus 61 A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 61 AIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence 99999999999998754 8999999987654 345899999999999999887765544443
No 110
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.36 E-value=9.4e-07 Score=66.30 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
++|++.++++++.+|++..+++.+|.+|+..|++++|...+.+++..+|+++.....+.+
T Consensus 8 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 8 DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998776655443
No 111
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.36 E-value=1.3e-06 Score=101.50 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=87.9
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+...|..+.+.|++++|+..|.++++.+|+++.++.++|.+|...|++ ++|++.++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-----------------------~eA~~~l~ 661 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-----------------------AAARAQLA 661 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 4556788888889999999999999999999999999999999999998 89999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
++++.+|++..++..+|.++...|++++|++.|++++...|.++.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 888888888888888899888899999999999988887766553
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=1.9e-06 Score=86.46 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=108.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.+...+...+..++..+++.+|++.+.+++.++|+.+.+..++|.+|++.|++ ++|+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~-----------------------~eai 394 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP-----------------------QEAI 394 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh-----------------------HHHH
Confidence 44555667899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
......+.-+|+++..|..+|++|-.+|+-.+|...+-.++.+......+...+...++..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999888888777777666655
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.35 E-value=2.8e-06 Score=80.93 Aligned_cols=114 Identities=14% Similarity=0.171 Sum_probs=95.6
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccc---cchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL---GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..+..+..+|..++..|+|++|+..|.+.+...|..+.+. ..+|.+|++++++ +
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-----------------------~ 86 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-----------------------P 86 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-----------------------H
Confidence 3567788999999999999999999999999999887544 8899999999999 9
Q ss_pred HHHHHHHHHhhccccchH---HHHHHHHHHHhhh------------------hHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 122 LALKDAEKLLNLQSNSMK---SHLLKANALILLE------------------RYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~---~~~~~~~~~~~~~------------------~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+|+..+++.++..|+++. ++|.+|.++..++ .-.+|+..|+..++..|+.+-.......
T Consensus 87 ~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 87 LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 999999999999988755 8899998865443 1357888999999999988766555444
Q ss_pred H
Q 011861 181 L 181 (476)
Q Consensus 181 ~ 181 (476)
+
T Consensus 167 l 167 (243)
T PRK10866 167 L 167 (243)
T ss_pred H
Confidence 3
No 114
>PHA02926 zinc finger-like protein; Provisional
Probab=98.35 E-value=2.2e-07 Score=83.65 Aligned_cols=47 Identities=26% Similarity=0.861 Sum_probs=37.7
Q ss_pred CcccccccccccccCc---------EEccCCCcccHhhHHHhhhcC------CCCccccccc
Q 011861 200 TDDFDCTLCLKLLYEP---------ITTPCGHSFCRSCLFQSMDRG------NKCPLCRAVL 246 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P---------~~~~cgh~fC~~Cl~~~~~~~------~~Cp~cr~~~ 246 (476)
..+.+|+||++...++ +..+|+|+||..||.+|.... ..||.||..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3567999999986442 455999999999999998742 3499999876
No 115
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.34 E-value=2.2e-06 Score=87.34 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=79.8
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+...|..++..|++++|+..|.++++.+|.+..++..++.++...|++ ++|++.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~ 164 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-----------------------QKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-----------------------HHHHHHH
Confidence 45566678888888888888888888888888778888888888888888 7777777
Q ss_pred HHHhhccccchH-----HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 128 EKLLNLQSNSMK-----SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 128 ~~al~l~p~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
.++++.+|.+.. .+..+|.++...|++++|...|.++++.+|++......+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 777777665422 445677777777788888887877777777665544433
No 116
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.34 E-value=1.3e-06 Score=88.06 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=66.2
Q ss_pred CchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCccc---ccchhHHHHHHHhhhccCCCCCcccCCCCCCCC
Q 011861 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV---LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
.......+..+...|..++..|+|++|+..|++||+++|++..+ |+|+|.+|..+|++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~------------------- 128 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG------------------- 128 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH-------------------
Confidence 34667788999999999999999999999999999999999855 99999999999999
Q ss_pred cchHHHHHHHHHHHhhcc
Q 011861 117 TTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~ 134 (476)
++|+.++++|+++.
T Consensus 129 ----dEAla~LrrALels 142 (453)
T PLN03098 129 ----KKAADCLRTALRDY 142 (453)
T ss_pred ----HHHHHHHHHHHHhc
Confidence 99999999999983
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=1.6e-06 Score=87.50 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=78.4
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|+|++|+..+.+|++++|+++.+|+++|.+|+.+|+| ++|+.
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-----------------------~eA~~ 91 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-----------------------QTAKA 91 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 4567889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLE 152 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~ 152 (476)
.++++++++|++..++..++.+...+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888866553
No 118
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.32 E-value=3.1e-07 Score=61.79 Aligned_cols=30 Identities=37% Similarity=1.113 Sum_probs=21.1
Q ss_pred cccccccccC----cEEccCCCcccHhhHHHhhhc
Q 011861 205 CTLCLKLLYE----PITTPCGHSFCRSCLFQSMDR 235 (476)
Q Consensus 205 C~iC~~~~~~----P~~~~cgh~fC~~Cl~~~~~~ 235 (476)
|+||.+ +.+ |+.++|||+||+.|+.++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 888 899999999999999998874
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=2.4e-06 Score=74.70 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=76.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
....+..|..++..|+|++|+..|.+++...|+. +.+...+|.+++..|+| ++|
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~-----------------------d~A 104 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY-----------------------DEA 104 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 4566778888999999999999999999877654 36778889999999999 899
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 105 l~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888855 33334456677789999999999999999988875
No 120
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.30 E-value=5.9e-07 Score=90.38 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=66.4
Q ss_pred cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHH---HHHHHHHHHhhh
Q 011861 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKS---HLLKANALILLE 152 (476)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~---~~~~~~~~~~~~ 152 (476)
-+|+++.+|.|+|.+|+.+|+| ++|+..|++|++++|++..+ |+++|.+|..+|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry-----------------------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG 126 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV-----------------------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE 126 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999 99999999999999999865 999999999999
Q ss_pred hHHHHHHHHhccccc
Q 011861 153 RYDMARDAILSGLQV 167 (476)
Q Consensus 153 ~~~~A~~~~~~~l~l 167 (476)
++++|+.+|++++++
T Consensus 127 r~dEAla~LrrALel 141 (453)
T PLN03098 127 EGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999997
No 121
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.30 E-value=4.8e-07 Score=61.67 Aligned_cols=42 Identities=45% Similarity=1.129 Sum_probs=36.3
Q ss_pred ccccccccccCcEEcc-CCCcccHhhHHHhhhc-CCCCcccccc
Q 011861 204 DCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDR-GNKCPLCRAV 245 (476)
Q Consensus 204 ~C~iC~~~~~~P~~~~-cgh~fC~~Cl~~~~~~-~~~Cp~cr~~ 245 (476)
.|++|.+.+.+++.++ |||.||..|+..|+.. ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4899999998887765 9999999999999986 6679999864
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.1e-06 Score=83.22 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=74.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+--+-.+|..|.+-|.|+.||+....||.+||..+.+|..+|.+|+.+|+| .+|++.
T Consensus 115 AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~-----------------------~~A~~a 171 (304)
T KOG0553|consen 115 AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY-----------------------EEAIEA 171 (304)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH-----------------------HHHHHH
Confidence 344556888999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYD 155 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 155 (476)
|.+||+++|+|....-.+..+-..+++..
T Consensus 172 ykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999866666666655544444
No 123
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.29 E-value=2.5e-06 Score=95.52 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=74.1
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+...|..+...|++++|+..|.+++...|.++.+|..+|.+|...|++ ++|+..+++
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~~~~ 626 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL-----------------------NKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHH
Confidence 334555666667777777777777777777777777777777777777 777777777
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
+++.+|+++.+++.+|.++...|++++|+..|+++++.+|++......+.
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777777777777777777777777777777776665554443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=2.3e-06 Score=79.68 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=98.6
Q ss_pred HHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHH
Q 011861 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (476)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (476)
...++.++..|+-+.+....+++...+|.+..++...|..+++.|+| ..|+..+++|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~-----------------------~~A~~~~rkA 126 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF-----------------------GEAVSVLRKA 126 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcch-----------------------HHHHHHHHHH
Confidence 45677788888889999999999999999998888899999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 131 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 131 l~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
..++|++.++|..+|.+|.+.|++++|...|.+++++.|+++.+..++..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 99999999999999999999999999999999999999999998776644
No 125
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.27 E-value=6.1e-07 Score=61.24 Aligned_cols=41 Identities=39% Similarity=1.028 Sum_probs=34.1
Q ss_pred ccccccccc---cCcEEccCCCcccHhhHHHhhhcCCCCccccc
Q 011861 204 DCTLCLKLL---YEPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (476)
Q Consensus 204 ~C~iC~~~~---~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~ 244 (476)
.|++|.+.+ ..|+.++|||+||..|+.+.......||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 488999888 35667899999999999988856667999974
No 126
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.4e-06 Score=86.07 Aligned_cols=114 Identities=23% Similarity=0.194 Sum_probs=106.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
-++.++..+|+..|..|||++|...|.+|++.+..-..+++|.|..+-.+|+. ++|+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l-----------------------deal 544 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL-----------------------DEAL 544 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH-----------------------HHHH
Confidence 34678889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..|-+.-.+--++.+.++.++.+|-.+.+...|++.+.++-.+-|+++.+..-+..+
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 999998888889999999999999999999999999999999999999987766555
No 127
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=1.5e-06 Score=78.53 Aligned_cols=110 Identities=23% Similarity=0.204 Sum_probs=102.4
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
..+|.-++++|.-|=.-|-+.-|.-.|++++.+.|.-+.++..+|.-+...|+| +.|
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f-----------------------daa 118 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF-----------------------DAA 118 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc-----------------------hHH
Confidence 345777888998888889999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
.+.++..+++||.+--++.++|.+++-.|+|.-|.+++.+..+-||+++--..
T Consensus 119 ~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L 171 (297)
T COG4785 119 YEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL 171 (297)
T ss_pred HHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999886433
No 128
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.25 E-value=1.8e-06 Score=84.24 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=86.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccC--CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIK--PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
....+......+...++++++...+.++.... +.++.+|..+|.++.+.|++ ++|
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~-----------------------~~A 165 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP-----------------------DKA 165 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-----------------------HHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 33445556677888999999999999977655 67889999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
++.+++|++++|++..+...+++.+...|+++++...+....+..|.++.++..+..+...+
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999988888887777788888776555544443
No 129
>PRK11906 transcriptional regulator; Provisional
Probab=98.24 E-value=7e-06 Score=82.88 Aligned_cols=118 Identities=9% Similarity=-0.011 Sum_probs=99.5
Q ss_pred HHHHhhHHHHHh---ccHHHHHHHHHHHh---ccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 49 DLVQKGNRAFRE---SNFEEAISNYSRAN---NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 49 ~~~~~g~~~~~~---~~~~~Ai~~y~~al---~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
+++.+|...+.+ ....+|+.++.+|+ .++|..+.+|..+|.||...--. . ..++...+.+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~------------g--~~~~~~~~~~ 322 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH------------G--KSELELAAQK 322 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh------------c--CCCchHHHHH
Confidence 556677776544 35678999999999 99999999999999999876443 1 1125666699
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
|.+.+++|+++||+++.+++.+|.++...++++.|...|++++.++|+...+.-...-
T Consensus 323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987655444
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.23 E-value=5.4e-06 Score=69.64 Aligned_cols=96 Identities=23% Similarity=0.111 Sum_probs=86.4
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+++.|..+-..|+.++|+.+|.+|+...... ..++.++|.++..+|++ ++|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~-----------------------deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY-----------------------DEAL 58 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 357788999999999999999999999985544 47899999999999999 9999
Q ss_pred HHHHHHhhcccc---chHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 125 KDAEKLLNLQSN---SMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 125 ~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
..+++++.-.|+ +......++.++...|++++|+..+..++.
T Consensus 59 ~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998888 888888999999999999999999988774
No 131
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.3e-06 Score=87.97 Aligned_cols=47 Identities=36% Similarity=0.992 Sum_probs=41.1
Q ss_pred ccccccccccccCcEEccCCCcccHhhHHHhhhcC-----CCCccccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-----NKCPLCRAVLFI 248 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~-----~~Cp~cr~~~~~ 248 (476)
+..||||++...-|+.+.|||.||..||.+.|..+ ..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 77999999999999999999999999999977633 359999998854
No 132
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.22 E-value=4.6e-06 Score=92.14 Aligned_cols=109 Identities=13% Similarity=-0.012 Sum_probs=78.2
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+....++|...+++|+|..|+..|.++++.+|+++......+.++...|++ ++|+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~-----------------------~~A~~ 89 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD-----------------------QEVID 89 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc-----------------------HHHHH
Confidence 4557788899999999999999999999999999853333777777777777 77777
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
.+++++.-+|.+..++..+|.++...|+|++|++.|+++++.+|+++.+...
T Consensus 90 ~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~g 141 (822)
T PRK14574 90 VYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISG 141 (822)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 7777773233333333344566777777777777777777777777665544
No 133
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.5e-06 Score=83.79 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=104.8
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhcc---------CCCCCcccCCCC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKH---------RPPSASEYRPLN 112 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~ 112 (476)
..++...++..+|+.+...++.++|+-+|..|+.+.|.+-..|..+-.+|+..|++.++ .+++-+.-=.++
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 34556788899999999999999999999999999999999999998888887765322 222223333344
Q ss_pred CCC---CcchH-HHHHHHHHHHhhccccchHHHHH---------------------------------HHHHHHhhhhHH
Q 011861 113 GLD---PTTHA-ELALKDAEKLLNLQSNSMKSHLL---------------------------------KANALILLERYD 155 (476)
Q Consensus 113 ~~~---~~~~~-~~a~~~~~~al~l~p~~~~~~~~---------------------------------~~~~~~~~~~~~ 155 (476)
|.+ +.... ++|.+.+++++.++|.+.++... +|.++.....|.
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 411 11111 78888999999999986654444 455555566677
Q ss_pred HHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 156 MARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 156 ~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
+|+++|.++|.+||.+....+++..++|.-.
T Consensus 489 ~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 7777777777788888877777777776554
No 134
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.19 E-value=9.3e-06 Score=76.56 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=101.8
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.+..+++.|-.+++.|||..|...|..-++..|+.+ .+++-+|.+++.+|+| ..
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y-----------------------~~ 196 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY-----------------------ED 196 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-----------------------hH
Confidence 345589999999999999999999999999999874 8899999999999999 99
Q ss_pred HHHHHHHHhhccccch---HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSM---KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 123 a~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|...|..+++-.|+++ .+++-+|.++..+|+-++|...|.+..+.-|..+.+......+
T Consensus 197 Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 197 AAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999887764 5899999999999999999999999999999988877655544
No 135
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.6e-07 Score=81.90 Aligned_cols=49 Identities=45% Similarity=0.971 Sum_probs=42.3
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHH-hhhcCCC-Cccccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQ-SMDRGNK-CPLCRAVLFI 248 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~-~~~~~~~-Cp~cr~~~~~ 248 (476)
..++.|.+|++....|..++|||.||..||.. |-.+... ||+||+...+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 45889999999999999999999999999998 5555555 9999987643
No 136
>PRK11906 transcriptional regulator; Provisional
Probab=98.15 E-value=4.6e-06 Score=84.15 Aligned_cols=92 Identities=16% Similarity=0.031 Sum_probs=86.9
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
..+-.+|..+..+|++++|+|+.++..+|.++...+++ +.|+..+++|+.++|+++.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~-----------------------~~a~~~f~rA~~L~Pn~A~ 373 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA-----------------------KVSHILFEQAKIHSTDIAS 373 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch-----------------------hhHHHHHHHHhhcCCccHH
Confidence 45678899999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 140 SHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
+|+..|......|+.++|...++++++++|.-..+
T Consensus 374 ~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 374 LYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999975543
No 137
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.5e-05 Score=78.79 Aligned_cols=97 Identities=14% Similarity=0.223 Sum_probs=85.0
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+...+-.+.+.++|.+||...+++|+++|+|..+++.||.||..+++| +.|..++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-----------------------~~A~~df~k 316 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY-----------------------DLARDDFQK 316 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH-----------------------HHHHHHHHH
Confidence 344667788999999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHH-HHHHhcccccCC
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMA-RDAILSGLQVDP 169 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~l~l~p 169 (476)
|++++|+|-.+...+..+.....++.+. ...|...+..-+
T Consensus 317 a~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 317 ALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999988888888888777766655 677887776544
No 138
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=6.6e-06 Score=84.05 Aligned_cols=135 Identities=16% Similarity=0.090 Sum_probs=90.8
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH----------hhhccCCC----CCcc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS----------QFLKHRPP----SASE 107 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~----------~~~~~~~~----~~~~ 107 (476)
+.+.++++|.-.|......++=..||..+.++++++|++.+++..+|..|.+.| +|++..+. .-+.
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~ 393 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG 393 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence 445678999999999999999999999999999999999999999999998754 44332211 1111
Q ss_pred cCCCC----CCCCcchHHHHHHHHHHHhhccc--cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 108 YRPLN----GLDPTTHAELALKDAEKLLNLQS--NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 108 ~~~~~----~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
-...+ +....+....-.+.|-.|...+| .+++.+..+|..|+..|+|+.|++.|+.||..+|+|..+++
T Consensus 394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN 468 (579)
T KOG1125|consen 394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN 468 (579)
T ss_pred ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH
Confidence 11111 11222333444455555555555 56666666677676777777777777777777776666654
No 139
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.11 E-value=1.4e-06 Score=82.99 Aligned_cols=73 Identities=29% Similarity=0.584 Sum_probs=62.7
Q ss_pred CCcccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccccCC--CCcccchhHHHHHHHhCchHH
Q 011861 199 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP--RTCAVSVTLNSIIQKNFPEEY 271 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~--~~~~~n~~l~~~~~~~~~~~~ 271 (476)
.....+|.+|..++.++.++ .|-|+||+.||..++.....||.|...+..+. ..+..+..|+.++.+++|+-+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~ 87 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQ 87 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHH
Confidence 45678999999999999875 89999999999999999889999998874332 456778999999999999865
No 140
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.09 E-value=2.6e-06 Score=55.88 Aligned_cols=38 Identities=47% Similarity=1.315 Sum_probs=33.6
Q ss_pred cccccccccCcEEccCCCcccHhhHHHhhh-cCCCCccc
Q 011861 205 CTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLC 242 (476)
Q Consensus 205 C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~-~~~~Cp~c 242 (476)
|++|.+...+++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 788999988999999999999999999988 45569987
No 141
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.09 E-value=2.8e-06 Score=64.75 Aligned_cols=41 Identities=44% Similarity=1.001 Sum_probs=33.7
Q ss_pred cccccccccccCc------------E-EccCCCcccHhhHHHhhhcCCCCcccc
Q 011861 203 FDCTLCLKLLYEP------------I-TTPCGHSFCRSCLFQSMDRGNKCPLCR 243 (476)
Q Consensus 203 ~~C~iC~~~~~~P------------~-~~~cgh~fC~~Cl~~~~~~~~~Cp~cr 243 (476)
..|.||++.+.+| + ..+|||.|+..||.+|+.....||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3599999998433 3 348999999999999999888999997
No 142
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.08 E-value=1.2e-05 Score=88.80 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=81.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..+..+|+|++|+..|.++++.+|+++.++..++..|...++. ++|+..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-----------------------~eAl~~ 158 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG-----------------------GVVLKQ 158 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-----------------------HHHHHH
Confidence 344444577778888888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
+.+++..+|++... ..++.++...+++.+|+..++++++.+|++..+...
T Consensus 159 l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~ 208 (822)
T PRK14574 159 ATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKN 208 (822)
T ss_pred HHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 88888888874443 445555555677766888888888888888876543
No 143
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.07 E-value=1.3e-05 Score=80.68 Aligned_cols=104 Identities=12% Similarity=-0.008 Sum_probs=90.3
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
......+...|..+...|++++|+..|.++++++|+++.++..+|.+|...|++ ++|
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~-----------------------~eA 167 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF-----------------------KEG 167 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 334455667788999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccch----HHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 124 LKDAEKLLNLQSNSM----KSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 124 ~~~~~~al~l~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
+..+.++++..|..+ ..|+.+|.++...|++++|+..|.+++...|.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 999999999987433 35668999999999999999999998776663
No 144
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=1.2e-05 Score=84.25 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=96.1
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
+....|+-.+..++|++|.+++..+++++|-....|+++|-|+.+++++ +.|.++|.
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~-----------------------q~av~aF~ 543 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE-----------------------QAAVKAFH 543 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-----------------------HHHHHHHH
Confidence 3344455556779999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
..+.++|++..+|.+++-+|+.+|+-.+|...++++++-+-.+-.++++..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 999999999999999999999999999999999999998866666655443
No 145
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.06 E-value=1.6e-05 Score=80.07 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=84.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc--------
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT-------- 118 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 118 (476)
.+....+|..++..|++++|+..+.++++.+|++..++.. +..+..+|.+...........+......+..
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 4456678889999999999999999999999999877766 6667666665221111111111111222211
Q ss_pred -------hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 119 -------HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 119 -------~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
..++|+..++++++++|++..++..+|.+++..|++++|+..+.+++...|.+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 12667777777777777777777777777777788888887777777776643
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.06 E-value=1.1e-05 Score=70.35 Aligned_cols=88 Identities=9% Similarity=-0.093 Sum_probs=78.6
Q ss_pred hccC-CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhh
Q 011861 74 NNIK-PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE 152 (476)
Q Consensus 74 l~~~-p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 152 (476)
..+. ++.-+..+.+|.-++..|++ ++|.+.|+-++.+||.+...|+.+|.++..+|
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l-----------------------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g 83 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEF-----------------------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK 83 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 4456 66778888999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 153 RYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 153 ~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
+|++|+..|.+++.++|+++...-....+.-.
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 99999999999999999999877666555433
No 147
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.1e-06 Score=80.42 Aligned_cols=104 Identities=22% Similarity=0.442 Sum_probs=79.8
Q ss_pred hhccccchHHHHHHHHH-HHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhcccCCCCCCCCccccccccc
Q 011861 131 LNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCL 209 (476)
Q Consensus 131 l~l~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~ 209 (476)
+.+.|+-.+-|-.-|.+ |.....|-.-..+|..+++++-.+...... +. ........-.|.|-||.
T Consensus 182 ~d~qpDicKdykeTgycg~gdSckFlh~r~DyK~GWqi~~e~d~~ke~------------~~-~~~~D~~~~Pf~c~icr 248 (313)
T KOG1813|consen 182 IDYQPDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQIEFEWDSAKEK------------KR-VKIEDIELLPFKCFICR 248 (313)
T ss_pred eecCchhhhhhHhhCcccccchhhhhhhhhhccccceeehhhhccccc------------cc-eecCCcccCCccccccc
Confidence 44568888888888877 446788889999999999998776665410 00 01111112256899999
Q ss_pred ccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 210 KLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 210 ~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..+.+||.+.|||+||..|....++.+..|++|.+.+.
T Consensus 249 ~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 249 KYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred cccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 99999999999999999999999999999999998764
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=2.2e-05 Score=79.50 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=83.3
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
..++.++..++-.+|+....++++..|.++.++...|..+++.+++ +.|++.+++|+
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-----------------------~lAL~iAk~av 261 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-----------------------ELALEIAKKAV 261 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHH
Confidence 3577777888899999999999999999999999999999999999 99999999999
Q ss_pred hccccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 132 NLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 132 ~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++.|+..+.|+.+|.+|..+|+|+.|+..++.+--.
T Consensus 262 ~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 262 ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999888866443
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.00 E-value=9.9e-06 Score=72.63 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=91.3
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCC--cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHH
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (476)
+.+.+|-..+|..+...+...++..+.+ ..+|.+.|.++...|++ ++|+..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~a 61 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY-----------------------AEALQNYYEA 61 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHH
Confidence 4566777888888888887777777666 57789999999999999 9999999999
Q ss_pred hhccccc---hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 131 LNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 131 l~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
+.+.|+. ..+|+.+|.++...|++++|+..+.++++++|.+......+..+-.
T Consensus 62 l~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 62 MRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 9997764 4589999999999999999999999999999988876655555444
No 150
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.99 E-value=4.6e-05 Score=82.13 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=101.8
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC-cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
...+..++..|..+..+|||++|-..|.++++.+|++ .-.++.+|+.|++.|++ ..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl-----------------------e~ 360 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL-----------------------EE 360 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH-----------------------HH
Confidence 3456778999999999999999999999999999998 78889999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhh----hHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLE----RYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
|+..+++++..+|++.+...-+|..|...+ .-+.|.....++++..|.+..++-.+..
T Consensus 361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 999999999999999999999999998775 7788999999999998888877655544
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=3.7e-05 Score=59.65 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=68.2
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHh
Q 011861 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
+++++|.++...|++ .+|+..+.++++..|++..+++.+|.++...|++++|+..++
T Consensus 2 ~~~~~a~~~~~~~~~-----------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDY-----------------------DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcH-----------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999 999999999999999999999999999999999999999999
Q ss_pred cccccCCCCchhhHHHHHH
Q 011861 163 SGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 163 ~~l~l~p~~~~~~~~~~~~ 181 (476)
+++...|.+......+..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 59 KALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHhCCCcchhHHHHHHHH
Confidence 9999999887655444433
No 152
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.6e-06 Score=83.06 Aligned_cols=69 Identities=32% Similarity=0.785 Sum_probs=57.7
Q ss_pred CcccccccccccccCcEEc-cCCCcccHhhHHHhhh-cCCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 200 TDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMD-RGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
..++.|++|+.+++..++. .|+|-||..||...+. .+..||.||+.+. +.+.+..+.....++.+.+|.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~-SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV-SKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc-ccccCCCCccHHHHHHHHhcc
Confidence 3478999999999998876 8999999999988877 4567999999985 347788887778888887776
No 153
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.3e-06 Score=82.70 Aligned_cols=64 Identities=34% Similarity=0.868 Sum_probs=52.3
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHh
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKN 266 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~ 266 (476)
..+.+.|+||++.+..|..++|||+||..|+..++.....||.||. .. ..+..|..+.++++.+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~---~~~~~n~~l~~~~~~~ 73 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PS---RNLRPNVLLANLVERL 73 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-ch---hccCccHHHHHHHHHH
Confidence 4468899999999999988899999999999998885556999995 32 2555777888887665
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=5.9e-05 Score=70.01 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=96.0
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
...+|-.+-..|+|++|++.|+..++-||+|..+|...-.+..-+|+. .+||+....
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-----------------------l~aIk~ln~ 145 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-----------------------LEAIKELNE 145 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-----------------------HHHHHHHHH
Confidence 344666677789999999999999999999999999888888888998 899999999
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
-++.-+++.++|..++.+|...|+|+.|.=.+++.+-+.|.++-....+..+
T Consensus 146 YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 146 YLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765544443
No 155
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.92 E-value=6.9e-05 Score=80.29 Aligned_cols=110 Identities=20% Similarity=0.156 Sum_probs=88.1
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..|+.-|...-+.|++.+|+-+|++||+.+|.+......|++.|.++|+. ..|+.-+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-----------------------~~Am~~f 264 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-----------------------KRAMETF 264 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-----------------------HHHHHHH
Confidence 34555566667889999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcccc----ch-HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 128 EKLLNLQSN----SM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 128 ~~al~l~p~----~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.+++.++|. .. ..-+..+..+...++-+.|.+.+..++. ...+......+..+
T Consensus 265 ~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 265 LQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-KEKDEASLEDLNIL 322 (895)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hccccccccHHHHH
Confidence 999999992 22 2444558888888888999999999987 33444444444433
No 156
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2e-05 Score=76.34 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=104.1
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCC-----------C--------CcccccchhHHHHHHHhhhccCCCCC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKP-----------G--------DPIVLGNRSSAYIRISQFLKHRPPSA 105 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~~~~~~~ 105 (476)
..+....+.|+..|++++|..|...|.++++.-. + ...++.+.+.+-++++.+
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~-------- 291 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR-------- 291 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCC--------
Confidence 4456677889999999999999999999987521 1 125666777788888888
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 106 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
..|+.....+++.++...++||++|++++.+.++++|++++..+....|++..+...+....+.+
T Consensus 292 ---------------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 292 ---------------GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred ---------------CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 88888888888899999999999999999999999999999999999999999998888887777
Q ss_pred hhhhc
Q 011861 186 ASLIG 190 (476)
Q Consensus 186 ~~~~~ 190 (476)
.+...
T Consensus 357 ~~~~~ 361 (372)
T KOG0546|consen 357 KQYNR 361 (372)
T ss_pred HHHHH
Confidence 66544
No 157
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=6.3e-06 Score=79.24 Aligned_cols=48 Identities=33% Similarity=0.893 Sum_probs=41.9
Q ss_pred CCcccccccccccccCc-------------EEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 199 RTDDFDCTLCLKLLYEP-------------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P-------------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
..++..|.||++-+..| ..+||||.++..|++.|.++...||.||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 56788999999875433 5689999999999999999999999999985
No 158
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.88 E-value=7.3e-05 Score=80.67 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=95.7
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (476)
-.+...|++..|+..|+++.+--..+..+|.|+|-||+.+|+| ..|++.|+.++..-
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy-----------------------~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY-----------------------RLAIQMYENCLKKF 710 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH-----------------------HHHHHHHHHHHHHh
Confidence 3345567777777777776666556679999999999999999 99999999999864
Q ss_pred --ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 135 --SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 135 --p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
.+++..+..+|.+++..|.|.+|...+..++.+.|.|+.+.-++..+.+.++....
T Consensus 711 ~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 711 YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999998888888777776544
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.88 E-value=5.3e-06 Score=64.06 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=56.1
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc-------ccchHHHHHHHHHHHhhh
Q 011861 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-------SNSMKSHLLKANALILLE 152 (476)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-------p~~~~~~~~~~~~~~~~~ 152 (476)
-..++.++|.+|..+|+| ++|+..+++++++. |.-..+++.+|.++..+|
T Consensus 4 ~a~~~~~la~~~~~~~~~-----------------------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g 60 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRY-----------------------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG 60 (78)
T ss_dssp HHHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence 346789999999999999 99999999999873 233668999999999999
Q ss_pred hHHHHHHHHhccccc
Q 011861 153 RYDMARDAILSGLQV 167 (476)
Q Consensus 153 ~~~~A~~~~~~~l~l 167 (476)
++++|+..+++++++
T Consensus 61 ~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 61 DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998864
No 160
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.85 E-value=5.8e-05 Score=78.19 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=96.0
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..++.++...|..++|.++++..+..++..|...+.+...|..+..+|+- ++|....
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-----------------------~ea~~~v 64 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-----------------------EEAYELV 64 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-----------------------HHHHHHH
Confidence 45677777888888888888888888888888888888888888888888 8888888
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+.++..|+.+.-.|.-+|.++...++|++|+..|+.|+.++|+|..+...+.-++-.+..
T Consensus 65 r~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 65 RLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred HHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888888887777666655543
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.85 E-value=1.2e-05 Score=51.46 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMAR 158 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~ 158 (476)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999996
No 162
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.84 E-value=0.0001 Score=75.91 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=105.1
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
..+++.....+|...+..|||+.|.+...++.+..|+....+...|.++.+.|++ +.
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~-----------------------~~ 136 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE-----------------------AR 136 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH-----------------------HH
Confidence 4456778889999999999999999999999999998888888899999999999 99
Q ss_pred HHHHHHHHhhccccch-HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 123 ALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 123 a~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
|...+.++.+..|++. ......+.+++..|+++.|...+++.++.+|+++.+...+..+....+
T Consensus 137 A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 137 ANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999886 455557999999999999999999999999999988766655544333
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00013 Score=67.76 Aligned_cols=110 Identities=18% Similarity=0.077 Sum_probs=94.0
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
..-.+|+--+||+...+-++..++|+++|..+|..|+..|+| .+|.=.++..+=++|
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-----------------------~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-----------------------EKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-----------------------HHHHHHHHHHHHcCC
Confidence 334557777999999999999999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHh---hhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 136 NSMKSHLLKANALIL---LERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
.++..+.++|.+++- ..++.-|+.+|.++++++|.+--...++-.+-.++.+.
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 999999999999874 45788999999999999997666666555555555543
No 164
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=1.6e-05 Score=76.46 Aligned_cols=47 Identities=36% Similarity=0.798 Sum_probs=36.1
Q ss_pred ccccccccccc-ccCcE----EccCCCcccHhhHHHhhhcC-CCCcccccccc
Q 011861 201 DDFDCTLCLKL-LYEPI----TTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~-~~~P~----~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~ 247 (476)
++..||+|... +.+|- ..+|||.||..|+...+..+ ..||.|+..+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 35689999984 45663 22799999999999977644 46999998873
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.80 E-value=7.2e-05 Score=82.35 Aligned_cols=128 Identities=9% Similarity=-0.093 Sum_probs=103.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.+..++....+.+...+++++|+.....+++..|+...+|+..|..|++.+++ +.-+-+ .+.+.-....-..++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~-----~~~~lv-~~l~~~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPL-----NDSNLL-NLIDSFSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcch-----hhhhhh-hhhhhcccccchhHH
Confidence 44667777888888999999999999999999999999999999999988886 222233 333333333334666
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
+++...+..-+++-.|++.+|.||-.+|++++|...|+++++++|+|..+.+.+
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 777766666777778999999999999999999999999999999999887654
No 166
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.80 E-value=3.9e-05 Score=74.37 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=104.8
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCCCCCC--CCcch
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGL--DPTTH 119 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (476)
+.+...|+.+...+.|+++++.|..|+++..++. .++..+|..|-+++++-|..+=+-+++....+. +.=++
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3344466666666777777777777766644332 334444444545444422221111111111000 00000
Q ss_pred H-------------------HHHHHHHHHHhhcc------ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC--Cc
Q 011861 120 A-------------------ELALKDAEKLLNLQ------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPF--SN 172 (476)
Q Consensus 120 ~-------------------~~a~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~--~~ 172 (476)
- ..|.+.++.|.++. +.+.....-+|.+|...|+.+.|..-|+.++..... |.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 0 56666666665552 445667778899999999999888888887754221 11
Q ss_pred h----hhHHHHHH-------------------HHhhhh--hhcc---------------cCCCCC-------------CC
Q 011861 173 P----LQASLQNL-------------------ERTTAS--LIGR---------------RIHGTP-------------ER 199 (476)
Q Consensus 173 ~----~~~~~~~~-------------------~~~~~~--~~~~---------------~~~~~~-------------~~ 199 (476)
- +..+..++ ++.++. .++. +..+.+ ..
T Consensus 283 mgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~ 362 (518)
T KOG1941|consen 283 MGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVE 362 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 0 01111110 011100 0000 011111 12
Q ss_pred Cccccccccccccc-CcE---EccCCCcccHhhHHHhhhc--CCCCcccccc
Q 011861 200 TDDFDCTLCLKLLY-EPI---TTPCGHSFCRSCLFQSMDR--GNKCPLCRAV 245 (476)
Q Consensus 200 ~~~~~C~iC~~~~~-~P~---~~~cgh~fC~~Cl~~~~~~--~~~Cp~cr~~ 245 (476)
...+.|.+|.+.+- .|- -+||.|+|+..|+...+.+ ..+||.||+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34678999998764 332 3699999999999987763 3469999953
No 167
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00012 Score=65.68 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=65.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
..-+..+|-..++.+.++.||...++||++.|++-.++..||.+|.++.+| ++|+.|
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~-----------------------eealeD 190 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY-----------------------EEALED 190 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH-----------------------HHHHHH
Confidence 445677889999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchH
Q 011861 127 AEKLLNLQSNSMK 139 (476)
Q Consensus 127 ~~~al~l~p~~~~ 139 (476)
|.+.++++|....
T Consensus 191 yKki~E~dPs~~e 203 (271)
T KOG4234|consen 191 YKKILESDPSRRE 203 (271)
T ss_pred HHHHHHhCcchHH
Confidence 9999999998743
No 168
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.75 E-value=0.00012 Score=75.48 Aligned_cols=114 Identities=11% Similarity=-0.074 Sum_probs=89.4
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccc--cchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL--GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.........|..+...|++++|+..+.++++..|++.... ..+....+..++. ..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-----------------------~~ 317 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-----------------------EK 317 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-----------------------HH
Confidence 4566777889999999999999999999999999986532 1111122222333 78
Q ss_pred HHHHHHHHhhccccch--HHHHHHHHHHHhhhhHHHHHHHHh--cccccCCCCchhhHHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSM--KSHLLKANALILLERYDMARDAIL--SGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 123 a~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~--~~l~l~p~~~~~~~~~~~~~ 182 (476)
+++.++++++..|+++ ..+..+|.+++..|+|++|.++|+ .+++.+|++.... .+..+-
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll 380 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAF 380 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHH
Confidence 8999999999999999 788899999999999999999999 6888888877644 444443
No 169
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.74 E-value=0.00011 Score=77.63 Aligned_cols=119 Identities=19% Similarity=0.092 Sum_probs=107.9
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.-+...|..+.+.++-++|..+..+|-.++|..+..|+.+|.++...|++ .+|...|
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~-----------------------~EA~~af 707 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL-----------------------EEAKEAF 707 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh-----------------------HHHHHHH
Confidence 44556677777778889999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHH--HHhcccccCCCCchhhHHHHHHHHhhhhhh
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARD--AILSGLQVDPFSNPLQASLQNLERTTASLI 189 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~ 189 (476)
..|+.+||+++.+.-.+|.++...|+..-|.. .+..++++||.|++++-.+..+-++.+...
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 99999999999999999999999998887777 999999999999999999999877766543
No 170
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.74 E-value=5.1e-05 Score=81.90 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=90.1
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhc-------cCCCCCcc-------cCCCCCC
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLK-------HRPPSASE-------YRPLNGL 114 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~-------~~~~~~~ 114 (476)
.+-..|..|-.--|..+|-.+|.+|.++|+++..+....+..|.....+=+ ....+.+. .+.+..+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 344556666666688888888888888888887555555555444333200 00000000 0111111
Q ss_pred CCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 115 DPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
.++++ ..|+..++.|++.+|++..+|..+|.+|...|+|..|+..|.++..++|.+.-.+-...-++
T Consensus 574 ea~n~-h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 574 EAHNL-HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred Cccch-hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 11111 78899999999999999999999999999999999999999999999998876554443333
No 171
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.72 E-value=3.2e-05 Score=83.38 Aligned_cols=110 Identities=21% Similarity=0.132 Sum_probs=98.7
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+..+|--|++.+++-+||..++-|++.+|+|..+|..+|.+|...|+| ..|++.+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry-----------------------~~AlKvF 619 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY-----------------------SHALKVF 619 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-----------------------ehHHHhh
Confidence 34566888899999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
.+|..++|.+.-+.|..|...+.+|+|.+|++.+...+.........+.++.+
T Consensus 620 ~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999888765555555554443
No 172
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=7.5e-05 Score=71.59 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=77.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.++.-+...|+.+-..++++.|++.|..+++.+|.+.++..-.|.-|+.-++. +-|+
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P-----------------------E~Al 344 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP-----------------------EMAL 344 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh-----------------------HHHH
Confidence 34555666777777777888888888888888888887777777777777777 7788
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
..|++.+++.-.+++.+.++|.|++..++|+-++..|++++...
T Consensus 345 ryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 345 RYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 88888888877777888888888888888888887777777654
No 173
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2.7e-05 Score=76.10 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=38.4
Q ss_pred cccccccccccCc---EEccCCCcccHhhHHHhhhcC-CCCcccccccc
Q 011861 203 FDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (476)
Q Consensus 203 ~~C~iC~~~~~~P---~~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~ 247 (476)
.+|.||++.+..- ..+||+|.|+..|+..|+... ..||+|++.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 6999999988644 458999999999999999865 55999998763
No 174
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.0001 Score=61.22 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=64.0
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHH
Q 011861 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMA 157 (476)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A 157 (476)
+.+++..|..+.+.|++ ++|++.+.++++.+|++ ..+++.+|.++...|+|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~-----------------------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 58 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDY-----------------------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADA 58 (119)
T ss_pred cHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHH
Confidence 45788999999999999 99999999999999886 57999999999999999999
Q ss_pred HHHHhcccccCCCCch
Q 011861 158 RDAILSGLQVDPFSNP 173 (476)
Q Consensus 158 ~~~~~~~l~l~p~~~~ 173 (476)
+..|..++..+|+++.
T Consensus 59 ~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 59 AKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHCCCCCc
Confidence 9999999999988653
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=4.7e-05 Score=68.57 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=70.8
Q ss_pred CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc---hHHHHHHHHHHHhhhh
Q 011861 77 KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLER 153 (476)
Q Consensus 77 ~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~ 153 (476)
++....+++++|..+...|++ ++|+..+++++++.|+. ..+++.+|.++..+|+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 87 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEY-----------------------AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE 87 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC
Confidence 345567899999999999999 99999999999987764 4689999999999999
Q ss_pred HHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 154 YDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 154 ~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|++|+..+.++++++|.+......+..+
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 88 HDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 9999999999999999887765544444
No 176
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.00045 Score=60.23 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=85.7
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
...+...+......+..+++.++...+.+.+.-.|+. ..+...+|.+++..|++
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------------------- 64 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------------------- 64 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 3456677888888889999999999999999999988 47778899999999999
Q ss_pred HHHHHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHHHHHHhc
Q 011861 121 ELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILS 163 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (476)
++|+..++.+++..|+. ..+.+++|.+++..|+|++|+..+..
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999987664 45889999999999999999999976
No 177
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.65 E-value=4.2e-05 Score=58.97 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=56.6
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhcc---CCC----CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI---KPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
.+..+...|..++..|+|++|+..|.+++++ .++ -..++.++|.+|..+|++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--------------------- 62 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY--------------------- 62 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH---------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH---------------------
Confidence 4567888999999999999999999999976 221 257899999999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q 011861 119 HAELALKDAEKLLNLQ 134 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~ 134 (476)
++|++.+++|+++.
T Consensus 63 --~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 63 --EEALEYYQKALDIF 76 (78)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhh
Confidence 99999999999874
No 178
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.65 E-value=0.00034 Score=71.86 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=92.7
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccch-hHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNR-SSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..+++.....+|-..+..|||++|.+...++-+..++ +.+++.. |.+..+.|++ +
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~-----------------------~ 135 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDE-----------------------A 135 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCH-----------------------H
Confidence 4456777888999999999999999887776665433 4444444 5565889999 9
Q ss_pred HHHHHHHHHhhccccchHHH-HHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 122 LALKDAEKLLNLQSNSMKSH-LLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
.|...+.+|.+.+|++..+. ...+..+...|+++.|...+++..+.+|+++.+...+..+....
T Consensus 136 ~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 136 RANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999886544 34588999999999999999999999999998776665554333
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00017 Score=68.94 Aligned_cols=98 Identities=22% Similarity=0.182 Sum_probs=86.6
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
....++-+.-....+..+|+|.+-|..+|.+|+.+|++ ..|...|.+|+++.|+|+.
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~-----------------------~~A~~AY~~A~rL~g~n~~ 191 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA-----------------------SDALLAYRNALRLAGDNPE 191 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch-----------------------hHHHHHHHHHHHhCCCCHH
Confidence 34567788888899999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 140 SHLLKANALILLE---RYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 140 ~~~~~~~~~~~~~---~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
.+...|.+++... .-.++...|++++.+||+|..+...+..
T Consensus 192 ~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 192 ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999999986433 4468889999999999999988766543
No 180
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.7e-05 Score=82.45 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=42.3
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhh-cCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~~ 247 (476)
..-+.|+.|..-.++.+.+.|||-||..|+...+. +...||.|+..|.
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34679999998899999999999999999998887 6678999999874
No 181
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00015 Score=71.54 Aligned_cols=129 Identities=17% Similarity=0.125 Sum_probs=95.0
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc-------
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT------- 118 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 118 (476)
+..-+.+-|..+|..||+.+|+..|.++.-++|......-..|..+-+-|++. +..+=...+|..+..+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e----~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE----QDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh----hHHHHHHHHHhhhhcchhhhhhh
Confidence 44556778999999999999999999999999988644433343333333330 0000011122222111
Q ss_pred --------hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 119 --------HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 119 --------~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
-...|+....|+|+.+|++..+|..+|..+..+|+.++|.-+|+.+..+.|..-....++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGL 374 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 117899999999999999999999999999999999999999999999999887776654
No 182
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00018 Score=68.52 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=117.1
Q ss_pred cccccccccccCCCceeeeecccCccccccCCCC---CCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc
Q 011861 5 IFSQMSAEATSSGFPLVGIDDVDDYIWANEGEGS---LPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP 81 (476)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~ 81 (476)
+-.++..++.+....+.-+.+|+.|....+...- +..-..........+|...+..|++..|...|..++..+|++.
T Consensus 89 vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~ 168 (304)
T COG3118 89 VAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS 168 (304)
T ss_pred HHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc
Confidence 3456777788888888999999999988664210 1111112334566788899999999999999999999999999
Q ss_pred ccccchhHHHHHHHhhhcc-----CCCCCcccCCCCCCCC-cchHHHH-----HHHHHHHhhccccchHHHHHHHHHHHh
Q 011861 82 IVLGNRSSAYIRISQFLKH-----RPPSASEYRPLNGLDP-TTHAELA-----LKDAEKLLNLQSNSMKSHLLKANALIL 150 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~a-----~~~~~~al~l~p~~~~~~~~~~~~~~~ 150 (476)
.+...+|.+|...|+.-.. +.+++.+-.-.-+..+ -.+...| +.++.+.+..||++..+-+.+|..+..
T Consensus 169 ~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~ 248 (304)
T COG3118 169 EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHL 248 (304)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987110 0011110000000000 0111111 245556667789999999999999999
Q ss_pred hhhHHHHHHHHhcccccCCCCc
Q 011861 151 LERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 151 ~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
.|++++|.+.+...+..|-.+.
T Consensus 249 ~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 249 VGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred cCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999988766443
No 183
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.61 E-value=0.00031 Score=72.12 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=87.3
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccc-cchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVL-GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
+...+....+.|++++|...|.+|.+.+|++..+. ...+..+...|++ +.|+..++
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~-----------------------~~Al~~l~ 177 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN-----------------------HAARHGVD 177 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 45556777999999999999999999999885443 3448999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++.
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999887777766655443
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.60 E-value=0.00059 Score=63.98 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=95.4
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.-+..+.++|...++.|+|.+|+..|.......|..+ .+...++.++++.+++ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y-----------------------~ 88 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY-----------------------D 88 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH-----------------------H
Confidence 3477899999999999999999999999999988776 7788899999999999 9
Q ss_pred HHHHHHHHHhhccccchH---HHHHHHHHHHh--------hhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 122 LALKDAEKLLNLQSNSMK---SHLLKANALIL--------LERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~---~~~~~~~~~~~--------~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
.|+...++=+.+.|+++. ++|.+|.++.. ..--..|...|+..++.-|+++=+.....++..
T Consensus 89 ~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~ 161 (254)
T COG4105 89 LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK 161 (254)
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 999999999999988766 78888888754 233357777888888888887765554444433
No 185
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00028 Score=72.29 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=101.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
++-.|+.-|--|+--|++.+|..+|++|..+||....+|...|..|...+.. ++|+.
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh-----------------------dQAma 367 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH-----------------------DQAMA 367 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH-----------------------HHHHH
Confidence 3455777788888889999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
.|..|-++-|.....++.+|.=|+.++.++-|-..|..|+.+.|.++-+...
T Consensus 368 aY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 368 AYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 9999999999999999999999999999999999999999999999987654
No 186
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.51 E-value=6e-05 Score=48.05 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+++|+++|.++..+|+|++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 187
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.49 E-value=8.1e-05 Score=57.36 Aligned_cols=30 Identities=27% Similarity=0.794 Sum_probs=25.4
Q ss_pred ccCCCcccHhhHHHhhhcC---CCCcccccccc
Q 011861 218 TPCGHSFCRSCLFQSMDRG---NKCPLCRAVLF 247 (476)
Q Consensus 218 ~~cgh~fC~~Cl~~~~~~~---~~Cp~cr~~~~ 247 (476)
-.|+|.|+..||.+|+... ..||+||++..
T Consensus 50 g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 50 GKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3899999999999999843 45999999763
No 188
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=3.8e-05 Score=81.73 Aligned_cols=49 Identities=43% Similarity=0.895 Sum_probs=43.9
Q ss_pred CCcccccccccccccC-----cEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYE-----PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~-----P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
...+..|.||.+.+.. |..++|||.||..|+..|+++...||.||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3447899999999998 788999999999999999999999999999553
No 189
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.47 E-value=0.00055 Score=71.19 Aligned_cols=110 Identities=14% Similarity=0.000 Sum_probs=74.4
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
+.+.+.-+|-.+...|+-++|...-..+++.|+..+..|--.|..+....+| ++|++
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y-----------------------~eaiK 96 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY-----------------------DEAIK 96 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH-----------------------HHHHH
Confidence 3444555666666667777777777777777777777777777777777777 77777
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
.|+.|+.++|+|...+..++....++|+|+.....-.+.+++.|.+...+-..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 77777777777777777777777777777776666666667666666555433
No 190
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0007 Score=67.52 Aligned_cols=133 Identities=23% Similarity=0.106 Sum_probs=95.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCC-CCcccCCCCCCC--------
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPP-SASEYRPLNGLD-------- 115 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------- 115 (476)
..++-+++-++.|-...+..+||+.|.++..+-|+++.+++.+|..|-+-|+-+. .+| ---.|+++=.-=
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq-afq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ-AFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh-hhhhhhhcccccCcchHHHHHHHH
Confidence 3456678889999999999999999999999999999999999999988887611 111 011333321100
Q ss_pred ---CcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 116 ---PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 116 ---~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
.+..-++|+.++++|-=+.|+..+.-.-.+.|+...|.|..|.+.|+......|.+-+....+
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 111226777777777777787777777777777888888888887777777777776655443
No 191
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.45 E-value=0.00019 Score=74.69 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=86.8
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
+.........|..|+.+|+|++|+..+.+|++. .|.-.....+.|.+|..+++|
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~------------------ 257 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY------------------ 257 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH------------------
Confidence 334455556899999999999999999999998 555556666799999999999
Q ss_pred CcchHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 116 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
.+|+..|++|+.+ +|.-...+.++|.+|+..|+|++|...+++++++-
T Consensus 258 -----~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 258 -----DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999999999986 34456689999999999999999999999998863
No 192
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.42 E-value=0.0016 Score=67.95 Aligned_cols=139 Identities=20% Similarity=0.156 Sum_probs=97.0
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHH------HhhhccCCCCCcccCCC----CCCCCcchHH
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI------SQFLKHRPPSASEYRPL----NGLDPTTHAE 121 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 121 (476)
--+..++..||...|...+.+|++.+|++-++|..--...+.. .++.-++.....-.|-| .=+.-.+.++
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 3455667778888888888888888888765554422222111 11100000000000000 0011234449
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
+|++.++.+++.-|++++.|..+|+++-.+++.+.|...|..+++.-|+...++..+.++++...+..+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999887765443
No 193
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=6.5e-05 Score=70.83 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=42.9
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhcCCC-Ccccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNK-CPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~-Cp~cr~~~~ 247 (476)
....+|.||......|+.++|+|-||.-||+....+++. |++||.++.
T Consensus 5 ~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred ccCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 346689999999999999999999999999998887766 999999874
No 194
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.41 E-value=0.00082 Score=54.80 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=89.4
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+|..+|.+||+-+|++...+.+...+++. .++..-|.++.++..-. -++|...+++ -.+++.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t---en~d~k~~yL---------l~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT---ENPDVKFRYL---------LGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc---cCchHHHHHH---------HHhHHHHHH
Confidence 57889999999999999999999998887 67777888888887762 2555555555 889999999
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
+..+.|+.+..+|.+|.=+.....|+++..-.+++|.+.
T Consensus 70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999999989999999999999988753
No 195
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.39 E-value=0.00014 Score=46.10 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+++++.+|.++..+|+|++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 196
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00021 Score=66.48 Aligned_cols=52 Identities=29% Similarity=0.640 Sum_probs=42.8
Q ss_pred CCCCCCcccccccccccccCcEEc-cCCCcccHhhHHHhhh--cCCCCccccccc
Q 011861 195 GTPERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMD--RGNKCPLCRAVL 246 (476)
Q Consensus 195 ~~~~~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~--~~~~Cp~cr~~~ 246 (476)
.......+.+|++|.+....|.+. +|||.||..|+..... ....||.|+.+.
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred ccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 344466788999999999999887 5999999999977554 457899999875
No 197
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=9.8e-05 Score=69.46 Aligned_cols=45 Identities=29% Similarity=0.762 Sum_probs=37.4
Q ss_pred cccccccccccC---cEEccCCCcccHhhHHHhhh-cCCCCcccccccc
Q 011861 203 FDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (476)
Q Consensus 203 ~~C~iC~~~~~~---P~~~~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~~ 247 (476)
-+|.||+..+.. -+.+||.|-|+..|+.+|+. -...||+||.++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 689999987642 24679999999999999998 5567999999874
No 198
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.38 E-value=0.00012 Score=57.49 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=53.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
+...+...|..+|+.|+|.+|+..+++ .+.+|.+...++..|.|++++|+| ++|++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y-----------------------~eAi~ 79 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY-----------------------EEAIK 79 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 344566689999999999999999999 889998889999999999999999 99999
Q ss_pred HHHHH
Q 011861 126 DAEKL 130 (476)
Q Consensus 126 ~~~~a 130 (476)
.+.+|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 98875
No 199
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.36 E-value=0.00023 Score=45.27 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=30.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (476)
++.+...|..++..|+|++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999974
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.0011 Score=58.87 Aligned_cols=104 Identities=23% Similarity=0.248 Sum_probs=92.8
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhc-cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+..|+.+.+.|+|.+|..+|.+++. +.-.|+..+..+|.+.+.++++ ..|..-
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~-----------------------A~a~~t 146 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF-----------------------AAAQQT 146 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH-----------------------HHHHHH
Confidence 3445678889999999999999999987 5778899999999999999999 999999
Q ss_pred HHHHhhcccc--chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 127 AEKLLNLQSN--SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 127 ~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
+++..+.+|. .+..++..|.+|...|+|.+|...|+.++..-|.....
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar 196 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR 196 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH
Confidence 9999999986 57789999999999999999999999999888765543
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.36 E-value=0.0016 Score=56.64 Aligned_cols=96 Identities=24% Similarity=0.154 Sum_probs=77.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----------------------ccccchhHHHHHHHhhhccCCCC
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------------IVLGNRSSAYIRISQFLKHRPPS 104 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~ 104 (476)
...+...|......++...++..+.+++.+...+. .++..++..+...|++
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~------- 78 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDY------- 78 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-H-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH-------
Confidence 34566678888888999999999999999854432 5555677778888899
Q ss_pred CcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 105 ASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
++|+..+.+++..+|.+-.+|..+-.+|...|++.+|+..|.++-
T Consensus 79 ----------------~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 79 ----------------EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp ----------------HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.35 E-value=0.0015 Score=60.49 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=93.1
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
..+.+..|..+|+.|+|.+|+..|++.++..|+.+ .+++.+|.+++.+..-.. .....+....+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~------------~~~~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL------------RSDRDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-------------TT---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch------------hcccChHHHHHH
Confidence 35677889999999999999999999999999876 688899999888765410 112344555899
Q ss_pred HHHHHHHhhccccchH-----------------HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 124 LKDAEKLLNLQSNSMK-----------------SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
+..++..+..-|++.- --+..|.-|...|.|..|+.-++..++.-|+.+.....+..+.+
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 9999999999998532 23456777888999999999999999999998887665555443
No 203
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.0016 Score=62.66 Aligned_cols=104 Identities=8% Similarity=0.018 Sum_probs=83.2
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
|.-+=+.|+.+....++++|+..+.+|++-+|+..-+-..+|.++...|+| +.|++.
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y-----------------------~~AV~~ 236 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY-----------------------QKAVEA 236 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch-----------------------HHHHHH
Confidence 444556677778888888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccchH-HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 127 AEKLLNLQSNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 127 ~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
++.+++.||++.. ..-.+..||..+|+.++....+.++.+..+....
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 8888888888644 5567788888888888888888888887765443
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.34 E-value=5e-05 Score=48.55 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=27.9
Q ss_pred HHHHHhccCCCCcccccchhHHHHHHHhh
Q 011861 69 NYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 69 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (476)
+|++||+++|+++.+|.++|.+|...|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 48899999999999999999999999999
No 205
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.34 E-value=0.00012 Score=52.56 Aligned_cols=42 Identities=29% Similarity=0.825 Sum_probs=29.5
Q ss_pred CcccccccccccccCcEEc-cCCCcccHhhHHHhhhc--CCCCcc
Q 011861 200 TDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDR--GNKCPL 241 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~--~~~Cp~ 241 (476)
...+.|++.+..+.+||.. .|||+|.+..|.+++.+ ...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3467999999999999875 99999999999999943 345998
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.00018 Score=48.96 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=40.0
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHH
Q 011861 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 146 (476)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~ 146 (476)
+.++..+|.+|..+|++ ++|++.++++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~-----------------------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP-----------------------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35788999999999999 99999999999999999999998875
No 207
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.31 E-value=0.00039 Score=44.04 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (476)
++.+...|..++..|+|++|+.+|.++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4567889999999999999999999999999986
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.0024 Score=60.90 Aligned_cols=129 Identities=18% Similarity=0.136 Sum_probs=94.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCC----CCCcchH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNG----LDPTTHA 120 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 120 (476)
.+....|..+++.++|++|+..|++.++.+|+++ .+++.+|.++..+++- ..+..++ ...++.+
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~---------~~~~~~~~~~~~rD~~~~ 140 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS---------ALQGFFGVDRSDRDPQHA 140 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh---------hhhhccCCCccccCHHHH
Confidence 3456788999999999999999999999999886 5667777776555421 0111112 2244556
Q ss_pred HHHHHHHHHHhhccccchH-----------------HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMK-----------------SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
.+|+..++..++.-|++.- --+..|.-|...|.|..|+.-++..++.-|+.+...+.+-.+.+
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 8899999999999997532 22345566788999999999999999999988887766655544
Q ss_pred hh
Q 011861 184 TT 185 (476)
Q Consensus 184 ~~ 185 (476)
..
T Consensus 221 ay 222 (243)
T PRK10866 221 AY 222 (243)
T ss_pred HH
Confidence 33
No 209
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.30 E-value=0.0014 Score=53.88 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=80.2
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------------cccccchhHHHHHHHhhhccCCCCCcccCCC
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------------PIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (476)
...+......|...+..|-|++|..-|.+|....-+- ..+|..++.++..+|+|
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry-------------- 71 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRY-------------- 71 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-H--------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccH--------------
Confidence 3456677889999999999999999999998874332 36788899999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhc-------ccc----chHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 112 NGLDPTTHAELALKDAEKLLNL-------QSN----SMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l-------~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
++++....+|+.+ +.+ |..+.+.+|.++-.+|+.++|+..|+.+-+
T Consensus 72 ---------~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 72 ---------DECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ---------HHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8888888888764 333 677899999999999999999999987643
No 210
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.29 E-value=0.00065 Score=71.56 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=93.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.-|+..|-.+++-++++.|..+|...+.++|++..+|.|++.+|.++++- ++|-..+
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-----------------------~ra~~~l 576 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-----------------------KRAFRKL 576 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh-----------------------HHHHHHH
Confidence 45677888999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
..|++.+-.+.+.|-+-..+....|.+++|+++|.+.+.+.-..
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 99999998899999999999999999999999999988765433
No 211
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.00072 Score=64.98 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+.|.....+|++-||+...+-..+|.+.+..|+|+.|+..++.+++-||+.-
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 8889999999999999999999999999999999999999999998887543
No 212
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0005 Score=66.06 Aligned_cols=101 Identities=21% Similarity=0.061 Sum_probs=89.5
Q ss_pred HHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHH
Q 011861 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (476)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (476)
.+.|.-|++-|-+.+|-+.++.+++-.| -++.+..++.+|.+..+. ..|+..+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP-----------------------~~AL~~~~~g 282 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQP-----------------------ERALLVIGEG 282 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccH-----------------------HHHHHHHhhh
Confidence 4678899999999999999999998876 467888899999999999 9999999999
Q ss_pred hhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 131 LNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 131 l~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
++.-|.+.......|.++-.++++++|.+.|+.+++++|.|-++.
T Consensus 283 ld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEai 327 (478)
T KOG1129|consen 283 LDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAI 327 (478)
T ss_pred hhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceee
Confidence 999999998888899999999999999999999999998877653
No 213
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.23 E-value=0.0016 Score=63.70 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=83.1
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHH--HH--hhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR--IS--QFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.+.....-+.+++.++++.|.+.+..+-+.+.+ .+..++|.+++. .| ++ ++
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g~e~~-----------------------~~ 185 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATGGEKY-----------------------QD 185 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHTTTCC-----------------------CH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhCchhH-----------------------HH
Confidence 445555677888899999999999998888754 445555555554 44 35 88
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
|...|+...+..+.++..+..+|.+++.+|+|++|...+..+++.+|.+++...++.-+.
T Consensus 186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999988887888999999999999999999999999999999999988766554443
No 214
>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]
Probab=97.22 E-value=0.00089 Score=64.47 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=71.2
Q ss_pred ccCCCCCcceee--cccCCCccCCCCCChhHHHHHHHHHhc--CceeEEEEecCCCCCcccceeEEEEEEeeecCC--c-
Q 011861 284 FGVDLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEG--NHRMGMVIIDPTTGSVADFACEVEITECEPLPD--G- 356 (476)
Q Consensus 284 ~~~~~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~--~~~~~v~~~~~~~~~l~~iGt~~~I~~~~~~~d--G- 356 (476)
.+...+|+++.. |+|||.++|+.+..|+-..+++..... ++.|.+............-+|.++|.....--| |
T Consensus 61 ~t~~~~p~~~~~~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v~~re~~r~tt~evd~~R~p~d~Fgn 140 (371)
T KOG1400|consen 61 DTTNWIPICGQVMAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDVPERESLRYTTTEVDAYRVPQDNFGN 140 (371)
T ss_pred CceeeecccCceeeEecCcccCcchhcCHHHHHHHHHHHHhhcCCceEEEecccchHHhhccccceeccccccchhhhhh
Confidence 344458999966 899999999999999777777776665 566766655322333344566666553211112 3
Q ss_pred -eEEEEEEecceeEEeeee-cCCCeeEEEEEEecC
Q 011861 357 -RFVLEIESRRRFRILRSW-DQDGYRVAEIEWVQD 389 (476)
Q Consensus 357 -~~~V~v~G~~R~~I~~~~-~~~~~~~a~v~~l~d 389 (476)
-.++...|..|+++.++. +..|.-.|+|+.+|+
T Consensus 141 ~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~ 175 (371)
T KOG1400|consen 141 ALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPD 175 (371)
T ss_pred hhhhhhhhcccccceeeecccCCCcccceEEeccc
Confidence 345567899999999986 445666788888874
No 215
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.22 E-value=0.00068 Score=74.88 Aligned_cols=94 Identities=10% Similarity=-0.003 Sum_probs=77.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc-------------------ccccchhHHHHHHHhhhccCCCCCccc
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------------------IVLGNRSSAYIRISQFLKHRPPSASEY 108 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (476)
..++-.|-.++.+++++.|... .++...+.+. .+++.+|.||-++|++
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------- 132 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------- 132 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh-----------
Confidence 3445556666666666665555 5555555554 9999999999999999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 109 RPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 109 ~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++|.+.+++++++||+++.+..++|..|... +.++|+..+.++++.
T Consensus 133 ------------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 133 ------------KKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred ------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 999999999998875
No 216
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.22 E-value=0.0017 Score=68.43 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++|+...++||++.|..++.|+.+|.+|-..|++.+|...+..|-.+|+.|.-+..
T Consensus 211 ~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs 266 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINS 266 (517)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH
Confidence 89999999999999999999999999999999999999999999999998877654
No 217
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.21 E-value=0.00049 Score=71.73 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=82.3
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
.+..-|..|...++|.+|+..|.+|+.+ +|.-..++.|+|.+|.+.|+|
T Consensus 243 ~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf----------------------- 299 (508)
T KOG1840|consen 243 MLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKF----------------------- 299 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh-----------------------
Confidence 3445788999999999999999999987 455569999999999999999
Q ss_pred HHHHHHHHHHhhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 121 ELALKDAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 121 ~~a~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
.+|...|++|+++- |.-...+...|.++..+++|++|...+++++++
T Consensus 300 ~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99989998888864 333457778999999999999999999998875
No 218
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.00032 Score=47.64 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+.+++.+|.+|..+|++++|++.|+++++.+|+|..++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999998876543
No 219
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0017 Score=63.03 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=79.9
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcc------cCCCCC--------------
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASE------YRPLNG-------------- 113 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~-------------- 113 (476)
|.-+|+-|||++|+..|+-+.+.+.-+++++.++|-|++.+|.|.+++.-..+. -|.||-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 677899999999999999999988888999999999999999994332111110 000000
Q ss_pred --------CCCcchH---------HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 114 --------LDPTTHA---------ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 114 --------~~~~~~~---------~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
+|+-+|+ ++|+..|.+++.-+|+....--++|.||+.+.-|+.+-..+.-.+.-.|+++-+.
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 1111111 6666666666666665555555666666666666666666666666666655443
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.00091 Score=64.38 Aligned_cols=75 Identities=13% Similarity=-0.052 Sum_probs=64.5
Q ss_pred ccccchhHHH-HHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHH
Q 011861 82 IVLGNRSSAY-IRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMA 157 (476)
Q Consensus 82 ~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A 157 (476)
..++..|..+ ++.|+| ++|+..|++.++..|++ +.++|++|.+|+..|+|++|
T Consensus 143 ~~~Y~~A~~l~~~~~~y-----------------------~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A 199 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQ-----------------------DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDA 199 (263)
T ss_pred HHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 5566777776 456899 99999999999999998 57999999999999999999
Q ss_pred HHHHhcccccCCCCchhhHHHH
Q 011861 158 RDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 158 ~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
+..|.++++..|+++.....+-
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHH
Confidence 9999999999998776555443
No 221
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.0013 Score=55.33 Aligned_cols=73 Identities=22% Similarity=0.132 Sum_probs=63.1
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc---chHHHHHHHHHHHhhhhHHHH
Q 011861 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN---SMKSHLLKANALILLERYDMA 157 (476)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A 157 (476)
+.+++++|.++-.+|+. .+|+..|++|++.... -..++..+|.++..+|++++|
T Consensus 1 ~~~~~~~A~a~d~~G~~-----------------------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA 57 (120)
T PF12688_consen 1 PRALYELAWAHDSLGRE-----------------------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEA 57 (120)
T ss_pred CchHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999 9999999999997543 356999999999999999999
Q ss_pred HHHHhcccccCCC---CchhhH
Q 011861 158 RDAILSGLQVDPF---SNPLQA 176 (476)
Q Consensus 158 ~~~~~~~l~l~p~---~~~~~~ 176 (476)
...+++++.-.|+ +..+..
T Consensus 58 ~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 58 LALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred HHHHHHHHHHCCCccccHHHHH
Confidence 9999999988787 444443
No 222
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.0016 Score=63.53 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=82.9
Q ss_pred hHHHHHHhhHHHHHh-ccHHHHHHHHHHHhccCCC--C----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 46 HVFDLVQKGNRAFRE-SNFEEAISNYSRANNIKPG--D----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~-~~~~~Ai~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
-+..+...|..|... |++++|+.+|.+|+++.-. . ..++.+.|.++.++|+|
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y--------------------- 171 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY--------------------- 171 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H---------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH---------------------
Confidence 356677778888888 9999999999999998322 2 37788899999999999
Q ss_pred hHHHHHHHHHHHhhcccc------chHH-HHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 119 HAELALKDAEKLLNLQSN------SMKS-HLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~------~~~~-~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++|+..|+++....-+ +.+. ++..+.+++..|++..|...+.+....+|......+
T Consensus 172 --~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 172 --EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp --HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred --HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 9999999998874311 2333 456777889999999999999999999997776544
No 223
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.02 E-value=0.00099 Score=47.09 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
..+|.+|.+++.+|+|++|+.....+|+++|+|..+......+++.+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999888888776654
No 224
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.00 E-value=0.0021 Score=62.84 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=81.4
Q ss_pred hHHHHHhc--cHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 54 GNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 54 g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
|...+..| ++++|...|++.-...+..+.++..+|.+++.+|+| ++|.+.+..|+
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~-----------------------~eAe~~L~~al 228 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY-----------------------EEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H-----------------------HHHHHHHHHHC
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHH
Confidence 33445544 699999999999888888999999999999999999 99999999999
Q ss_pred hccccchHHHHHHHHHHHhhhhH-HHHHHHHhcccccCCCCchhhH
Q 011861 132 NLQSNSMKSHLLKANALILLERY-DMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 132 ~l~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
+.+|+++.++.+++-+...+|+. +.+...+.+.-..+|+++-+..
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999998 5566677777778888776544
No 225
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.99 E-value=0.0048 Score=61.28 Aligned_cols=96 Identities=19% Similarity=0.352 Sum_probs=81.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC--------Cc----------ccccchhHHHHHHHhhhccCCCCCcc
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--------DP----------IVLGNRSSAYIRISQFLKHRPPSASE 107 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--------~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (476)
........|...|++++|..|+..|..|+++... .+ .+--.++.||+++++.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp---------- 244 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP---------- 244 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC----------
Confidence 3455566788999999999999999999998432 21 3445688999999999
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 108 YRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
+.|+....+.+-+||.+..-|++.|-++..+.+|.+|...+.-+
T Consensus 245 -------------dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 245 -------------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred -------------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765544
No 226
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.93 E-value=0.0024 Score=65.70 Aligned_cols=100 Identities=23% Similarity=0.149 Sum_probs=91.2
Q ss_pred HhccHHHHHHHHHHHhccCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc
Q 011861 59 RESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (476)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (476)
..|+.-.|++++..|+...|... ....++|.+.++.|-. -.|-..+.+++.++...
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~-----------------------~da~~~l~q~l~~~~se 675 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH-----------------------LDATKLLLQALAINSSE 675 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh-----------------------ccHHHHHHHHHhhcccC
Confidence 45999999999999999999765 6678999999998877 88889999999999888
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+..++.+|.+++.+.+.+.|+++|+.|++++|++....+.+..+
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 88999999999999999999999999999999999998877766
No 227
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.87 E-value=0.0034 Score=63.76 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=89.1
Q ss_pred HhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccch
Q 011861 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (476)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (476)
..++|+.|+..+.+..+.+|+ +...+|.++..+++. .+|++...+++..+|.+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E-----------------------~~AI~ll~~aL~~~p~d~ 234 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE-----------------------VEAIRLLNEALKENPQDS 234 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH-----------------------HHHHHHHHHHHHhCCCCH
Confidence 347899999999999988875 556688999888888 999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
..+...|..++..++|+.|+...+++.++.|++-..+..+.++--.+
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998888776654333
No 228
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.84 E-value=0.0022 Score=64.90 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=75.0
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+..++..+++.++|..|+....+||+++|....+|+.+|.+...++++ .+|+.++++
T Consensus 41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~-----------------------~~A~~~l~~ 97 (476)
T KOG0376|consen 41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF-----------------------KKALLDLEK 97 (476)
T ss_pred echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH-----------------------HHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHHHH--hhhhHHHHH
Q 011861 130 LLNLQSNSMKSHLLKANALI--LLERYDMAR 158 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~--~~~~~~~A~ 158 (476)
...+.|+.+.+......+-. ...+|+.|+
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999988777776643 444555554
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.79 E-value=0.0056 Score=54.45 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.-+++||.-|.+||.++|+...++.++|.+|..++.+. +... ++..+-++|...|++|++.+|++..
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~----~d~~--------~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT----PDTA--------EAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-------HH--------HHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc----CChH--------HHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 56788999999999999999999999999999999860 0000 0112228899999999999999844
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.79 E-value=0.0017 Score=59.17 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=67.2
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHH
Q 011861 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARD 159 (476)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~ 159 (476)
.+..++.||..|-.+|-+ .-|--|+.+++.++|+-+.++..+|.-+...|+|+.|.+
T Consensus 64 RA~l~fERGvlYDSlGL~-----------------------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~e 120 (297)
T COG4785 64 RAQLLFERGVLYDSLGLR-----------------------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 120 (297)
T ss_pred HHHHHHHhcchhhhhhHH-----------------------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHH
Confidence 457788888899999999 999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCchhh
Q 011861 160 AILSGLQVDPFSNPLQ 175 (476)
Q Consensus 160 ~~~~~l~l~p~~~~~~ 175 (476)
.|...+++||.+.-+.
T Consensus 121 aFds~~ELDp~y~Ya~ 136 (297)
T COG4785 121 AFDSVLELDPTYNYAH 136 (297)
T ss_pred HhhhHhccCCcchHHH
Confidence 9999999999877554
No 231
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.77 E-value=0.00085 Score=68.28 Aligned_cols=49 Identities=39% Similarity=1.060 Sum_probs=44.4
Q ss_pred CCcccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
...++.|++|..++.+|+.. .|||.||..|+..|...+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 55678999999999999994 99999999999999999888999988764
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.75 E-value=0.0019 Score=54.06 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=57.5
Q ss_pred chhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 86 NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
..|.+....|+. +.|++.|.+++.+.|..+.+|.++++++...|+.++|++++++++
T Consensus 48 l~~valaE~g~L-----------------------d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 48 LKAIALAEAGDL-----------------------DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHHHHhccch-----------------------HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 346677788999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 011861 166 QVDPFS 171 (476)
Q Consensus 166 ~l~p~~ 171 (476)
++....
T Consensus 105 eLag~~ 110 (175)
T KOG4555|consen 105 ELAGDQ 110 (175)
T ss_pred HhcCcc
Confidence 987543
No 233
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.71 E-value=0.0076 Score=63.50 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+.-.|+-|-..|+|++|+...++||+..|+.+++|..+|.+|-..|++ .+|.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~-----------------------~~Aa~~~~ 252 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL-----------------------KEAAEAMD 252 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-----------------------HHHHHHHH
Confidence 4566788888999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
.|-.+|+.+--.-...+..++..|+.++|...+.....-+
T Consensus 253 ~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 253 EARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9999998765555566677789999999999888776544
No 234
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.004 Score=66.56 Aligned_cols=120 Identities=22% Similarity=0.358 Sum_probs=107.6
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC----cccccchhHHHHHHH--hhhccCCCCCcccCCCCCCCC
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRIS--QFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 116 (476)
...++..+.++|+..|.+++|..|-.-|..++.+-|.+ +..+.+++.+|..+| +|
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~------------------- 109 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEY------------------- 109 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccch-------------------
Confidence 44567889999999999999999999999999998854 478888999988754 78
Q ss_pred cchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 117 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
..++.++.-|+...|...++++.++.+|..+++++-|..++.-....+|.+........+++..+
T Consensus 110 ----~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 110 ----PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred ----hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888999999988888788887777
No 235
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.70 E-value=0.0032 Score=66.60 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=64.2
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+...|-.+..+|++++|...|++|+.++|+ ..+|..+|.++...|++ ++|++.|+
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~-----------------------~eA~~~~~ 477 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDN-----------------------RLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCH-----------------------HHHHHHHH
Confidence 3444566677889999999999999999994 78999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHH
Q 011861 129 KLLNLQSNSMKSHLLKANA 147 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~ 147 (476)
+|+.++|.++..|..--.+
T Consensus 478 ~A~~L~P~~pt~~~~~~~~ 496 (517)
T PRK10153 478 TAFNLRPGENTLYWIENLV 496 (517)
T ss_pred HHHhcCCCCchHHHHHhcc
Confidence 9999999988755443333
No 236
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.67 E-value=0.0097 Score=62.29 Aligned_cols=104 Identities=17% Similarity=-0.021 Sum_probs=94.8
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
..--.++.++|+..+.++++..|..+.+|..+|+++.++++. +.|-..|..-++..|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-----------------------e~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-----------------------EMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-----------------------HHHHHHHHhccccCC
Confidence 334568999999999999999999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
+.+..|..++..--..|..-.|+..+.++.-.||.+..++...-+++
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 99999999999988889999999999999999999998876554444
No 237
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.65 E-value=0.0011 Score=42.00 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++|+.+|.++..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999853
No 238
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.012 Score=61.07 Aligned_cols=121 Identities=22% Similarity=0.182 Sum_probs=70.2
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhh------ccCCCCCcccCCCCCCC----Cc
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFL------KHRPPSASEYRPLNGLD----PT 117 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~ 117 (476)
.+++..-+.+-..++|++|..-..+.+...|++..++...-.|..++++|= +-+.-.+....+.|... ..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 567777788888888888888888888888877655555555555555550 00000000000000000 00
Q ss_pred chHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+-.++|+..+. .+++......-..|++++.+|+|++|.+.|+...+.+.++
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 00055555554 4555566677778888888888888888888776655443
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.0013 Score=65.14 Aligned_cols=98 Identities=21% Similarity=0.157 Sum_probs=80.1
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
+++-..||.||--|||+.||.+-..-+++.-.. -.+++|+|.||..+|+| +
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f-----------------------e 252 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF-----------------------E 252 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc-----------------------H
Confidence 344456888999999999999988888775432 27899999999999999 9
Q ss_pred HHHHHHHHHhhcc----c--cchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 122 LALKDAEKLLNLQ----S--NSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 122 ~a~~~~~~al~l~----p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
.|++.|.+++.+- . -.++.-|.+|+.|.-+.+|..|+.++++-|.+.
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998866543 2 246688899999999999999999998876653
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.0041 Score=58.91 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=69.4
Q ss_pred ccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHHHHH
Q 011861 84 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDA 160 (476)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~ 160 (476)
.++-|.-+++.|+| ..|...|..-++.-|++ +.++||+|++++.+|+|++|...
T Consensus 144 ~Y~~A~~~~ksgdy-----------------------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~ 200 (262)
T COG1729 144 LYNAALDLYKSGDY-----------------------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI 200 (262)
T ss_pred HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH
Confidence 68999999999999 99999999999998886 56999999999999999999999
Q ss_pred HhcccccCCCCchhhHHHHHHHHhh
Q 011861 161 ILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 161 ~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
|..+.+-.|.++.+-..+-++-..+
T Consensus 201 f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 201 FARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHhCCCCCCChHHHHHHHHHH
Confidence 9999999999888766665554333
No 241
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.0087 Score=61.93 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=85.2
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCC-------------------------------cccccchhHHHHHHHhh
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------------------------------PIVLGNRSSAYIRISQF 97 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-------------------------------~~~~~~~a~~~~~~~~~ 97 (476)
.+-.+|+.+|+.|+|++|++.|...++.+..+ .+.++|.|-++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 45568999999999999999999986654333 37889999999999999
Q ss_pred hccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc--------cc-------chHHHHHHHHHHHhhhhHHHHHHHHh
Q 011861 98 LKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ--------SN-------SMKSHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--------p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
.+|++.+++|+++. -+ -......++.++..+|+-++|.+.|.
T Consensus 192 -----------------------~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 192 -----------------------NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred -----------------------HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999995432 11 12266789999999999999999999
Q ss_pred cccccCCCCchhhH
Q 011861 163 SGLQVDPFSNPLQA 176 (476)
Q Consensus 163 ~~l~l~p~~~~~~~ 176 (476)
..++.+|.|.....
T Consensus 249 ~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 249 DIIKRNPADEPSLA 262 (652)
T ss_pred HHHHhcCCCchHHH
Confidence 99999998886543
No 242
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.58 E-value=0.0036 Score=61.10 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=71.3
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccC--CCC----cccccchhHHHHHH-HhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIK--PGD----PIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~--p~~----~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+-..+++.++++|+.+|.+|+.+. -++ +.++.++|.+|... |++ ++|+
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~-----------------------e~Ai 135 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY-----------------------EKAI 135 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H-----------------------HHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34444566679999999999999873 222 36777888888877 888 9999
Q ss_pred HHHHHHhhcccc------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 125 KDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 125 ~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
+.|.+|+++-.. ....+...|.++..+|+|++|+..|++.....-+
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 999999997421 2346778999999999999999999998765433
No 243
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.018 Score=55.05 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=90.8
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
.+.+..+|+.||.+.+--.+.+|.+-..++.+|-||+...+| ..|...|++.-.+-|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f-----------------------~~AA~CYeQL~ql~P 75 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF-----------------------ALAAECYEQLGQLHP 75 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhhCh
Confidence 357888999999999999999999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
...+..+.-|+.++..+.|.+|+....... +++.+.+..-+++.++..
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998766553 446666655566555543
No 244
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00055 Score=47.30 Aligned_cols=44 Identities=30% Similarity=0.785 Sum_probs=36.7
Q ss_pred cccccccccccCcEEccCCCc-ccHhhHHHhhh-cCCCCccccccc
Q 011861 203 FDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMD-RGNKCPLCRAVL 246 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~-~~~~Cp~cr~~~ 246 (476)
.+|.||.+-..+.|...|||- .|..|-.+.+. .+-.||+||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 689999998888888999994 68999877666 455699999876
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.51 E-value=0.01 Score=50.98 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=65.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCC-CCCCcchHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLN-GLDPTTHAELA 123 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 123 (476)
.+....|..+|+.++|.+|+..|.+-|+++|+.+ -+++.+|.++++...- ..+.++ ....+..+..|
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~---------~~~~~~~~drD~~~~~~A 118 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG---------SLQSFFRSDRDPTPARQA 118 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh---------HHhhhcccccCcHHHHHH
Confidence 4566778999999999999999999999999886 6788899999887652 111122 23356667999
Q ss_pred HHHHHHHhhccccchH
Q 011861 124 LKDAEKLLNLQSNSMK 139 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~ 139 (476)
..++++.++.-|++.-
T Consensus 119 ~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 119 FRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHCcCChh
Confidence 9999999999998743
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=96.45 E-value=0.0067 Score=53.35 Aligned_cols=85 Identities=9% Similarity=-0.116 Sum_probs=73.4
Q ss_pred hccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhh
Q 011861 74 NNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLER 153 (476)
Q Consensus 74 l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 153 (476)
..+.++.-+..+..|--++..|++ ++|...|+-..-+||.+++.++.+|-++..+|+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~-----------------------~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRL-----------------------DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH
Confidence 444555567788889999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 154 YDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 154 ~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|++|+..|..+..++++|+...-....+
T Consensus 87 y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 87 FQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 9999999999999998888754444444
No 247
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0016 Score=64.20 Aligned_cols=47 Identities=28% Similarity=0.810 Sum_probs=39.2
Q ss_pred CcccccccccccccCcE-----E---ccCCCcccHhhHHHhhh--c-----CCCCccccccc
Q 011861 200 TDDFDCTLCLKLLYEPI-----T---TPCGHSFCRSCLFQSMD--R-----GNKCPLCRAVL 246 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~-----~---~~cgh~fC~~Cl~~~~~--~-----~~~Cp~cr~~~ 246 (476)
..+..|.||++...++. . .+|.|+||..|+..|.. + .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 56889999999888776 3 47999999999999983 4 46799999864
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.011 Score=63.53 Aligned_cols=48 Identities=33% Similarity=0.685 Sum_probs=38.6
Q ss_pred CCCCCcccccccccccccCcE-EccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 196 TPERTDDFDCTLCLKLLYEPI-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~-~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
....-+.-.|..|.-.+.-|+ .+.|||+|+.+|+. ++...||.|+...
T Consensus 834 sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 834 SAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred ccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 334445578999999999996 47999999999998 5667899997643
No 249
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.30 E-value=0.0022 Score=63.85 Aligned_cols=50 Identities=34% Similarity=0.664 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccccccCcE----EccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 195 GTPERTDDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 195 ~~~~~~~~~~C~iC~~~~~~P~----~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
......+.-+|++|++-|.+-+ ++.|.|+|.-.|+..|+. .+||+||.-.
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhc
Confidence 3444556779999999998765 569999999999999976 4699999754
No 250
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.27 E-value=0.0071 Score=56.97 Aligned_cols=42 Identities=40% Similarity=0.963 Sum_probs=37.1
Q ss_pred cccccccccccCcEEc-cCCCcccHhhHHHhhh-cCCCCccccc
Q 011861 203 FDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMD-RGNKCPLCRA 244 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~-~~~~Cp~cr~ 244 (476)
+.|+.|..++.+|+.+ -|||+||..||...+- ..+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999988 6889999999987665 6678999965
No 251
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.26 E-value=0.0038 Score=60.47 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=64.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+--+..+|-.||+...|..|....+.|+.++-.+..+|+.|+.+-..+|.. .+|.+|
T Consensus 131 pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~-----------------------~EAKkD 187 (536)
T KOG4648|consen 131 PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN-----------------------MEAKKD 187 (536)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH-----------------------HHHHHh
Confidence 334567888999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchH
Q 011861 127 AEKLLNLQSNSMK 139 (476)
Q Consensus 127 ~~~al~l~p~~~~ 139 (476)
|+.+|++.|++.+
T Consensus 188 ~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 188 CETVLALEPKNIE 200 (536)
T ss_pred HHHHHhhCcccHH
Confidence 9999999999754
No 252
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.23 E-value=0.012 Score=49.66 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHHHHhh-cccc-chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 116 PTTHAELALKDAEKLLN-LQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~-l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
.+..+++.+..++..++ -.|. .-...|++|..++.+|+|+.|+.+....++.+|+|+.+....+.+++++..
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itk 120 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITK 120 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Confidence 34566999999999986 3343 345788999999999999999999999999999999998888888777654
No 253
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.22 E-value=0.0059 Score=38.52 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=29.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG 79 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~ 79 (476)
+..+...|..+...|++++|+..|.++++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 356788999999999999999999999999984
No 254
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0027 Score=61.79 Aligned_cols=46 Identities=28% Similarity=0.751 Sum_probs=40.2
Q ss_pred ccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
-.+|.||+.-..+-+.+||-|. .|..|.+...-+...||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4689999999999999999996 799999876656778999999873
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.025 Score=52.61 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+...++-++..|+|-+++++.++.++.+|++..+|+.||.++...=+. .+|.+|+.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~-----------------------~eA~~D~~~ 289 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNE-----------------------AEAKADLQK 289 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCH-----------------------HHHHHHHHH
Confidence 456778889999999999999999999999999999999999888788 999999999
Q ss_pred HhhccccchHHHHH
Q 011861 130 LLNLQSNSMKSHLL 143 (476)
Q Consensus 130 al~l~p~~~~~~~~ 143 (476)
+++++|.-..+..+
T Consensus 290 vL~ldpslasvVsr 303 (329)
T KOG0545|consen 290 VLELDPSLASVVSR 303 (329)
T ss_pred HHhcChhhHHHHHH
Confidence 99999977665544
No 256
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.12 E-value=0.013 Score=56.13 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=71.5
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
...+.|......|....+.|+.++|...|..|+.++|+++.++...|......++. -
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i-----------------------v 167 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI-----------------------V 167 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh-----------------------H
Confidence 44456677777888899999999999999999999999999988888777666666 8
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHH
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~ 148 (476)
+|-..|-+|+.++|.|.+++-+++...
T Consensus 168 ~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 168 EADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hhhhhhheeeeeCCCchHHHhhhhccc
Confidence 888899999999999999988877543
No 257
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.04 E-value=0.0028 Score=61.93 Aligned_cols=46 Identities=35% Similarity=0.755 Sum_probs=39.0
Q ss_pred cccccccccccCcEEccCCCcccHhhHHHhhh--cCCCCccccccccc
Q 011861 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD--RGNKCPLCRAVLFI 248 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~--~~~~Cp~cr~~~~~ 248 (476)
.-|.||-+.-++-..-||||..|..|+..|-. .+..||.||..+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 36899998888877789999999999999875 35679999998843
No 258
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.02 E-value=0.0053 Score=46.12 Aligned_cols=29 Identities=31% Similarity=0.789 Sum_probs=26.8
Q ss_pred cCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 219 ~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
-|.|.|+..||.+|+.....||++|+.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 69999999999999999889999999763
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.042 Score=49.50 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=77.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
+....+.|..++..+++++|+..++.++..--+. +.+-.++|.+.+..|++ ++|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~-----------------------D~A 145 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA-----------------------DAA 145 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH-----------------------HHH
Confidence 3456788999999999999999999998764332 35667788999999999 888
Q ss_pred HHHHHHHhhccccchH-HHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 124 LKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+...+..- ++++.. ..-.+|.++...|+-++|+..|.++++.++++
T Consensus 146 L~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 77654332 233333 34479999999999999999999999987443
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.00 E-value=0.066 Score=47.91 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=56.5
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhH-HHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSS-AYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.+...|..+...+++..|+..+.+++...+.+.......+. ++...|++ +.|+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~ 153 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY-----------------------EEALELY 153 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 34445555555566666666666666665555444444444 56666666 6666666
Q ss_pred HHHhhccc---cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 128 EKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 128 ~~al~l~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
.+++..+| .....++..+..+...++++.|+..+.+++...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 66655555 24444445555555566666666666666665555
No 261
>PRK10941 hypothetical protein; Provisional
Probab=95.98 E-value=0.014 Score=56.14 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=68.7
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (476)
..+.|+=.+|.+.+++ ..|++..+..+.++|+++.-+..+|.+|.++|.+..|+.++
T Consensus 182 Rml~nLK~~~~~~~~~-----------------------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL 238 (269)
T PRK10941 182 KLLDTLKAALMEEKQM-----------------------ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDL 238 (269)
T ss_pred HHHHHHHHHHHHcCcH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 4456677788899999 99999999999999999999999999999999999999999
Q ss_pred hcccccCCCCchhhHHHHHH
Q 011861 162 LSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 162 ~~~l~l~p~~~~~~~~~~~~ 181 (476)
+..++..|+++.+......+
T Consensus 239 ~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 239 SYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHhCCCchhHHHHHHHH
Confidence 99999999999876555544
No 262
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0065 Score=58.57 Aligned_cols=49 Identities=22% Similarity=0.659 Sum_probs=43.4
Q ss_pred CCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
...++-.|+||..--.+.+..||+|.-|..||.+++.+.+.|-.|+..+
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 3456778999998888888899999999999999999999999998765
No 263
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.97 E-value=0.0042 Score=66.97 Aligned_cols=48 Identities=27% Similarity=0.760 Sum_probs=37.1
Q ss_pred CCccccccccccccc-C----c--EEccCCCcccHhhHHHhhhc--CCCCccccccc
Q 011861 199 RTDDFDCTLCLKLLY-E----P--ITTPCGHSFCRSCLFQSMDR--GNKCPLCRAVL 246 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~-~----P--~~~~cgh~fC~~Cl~~~~~~--~~~Cp~cr~~~ 246 (476)
.....+|+||..++. - | ..-.|.|.|+..|+.+|+.. .+.||.||..+
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 345678999998776 1 1 22368899999999999984 45699999876
No 264
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.027 Score=58.82 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=86.7
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
-++..|...|+..+|.-|+..|...++.-|.| +.+..+++.||+++.+. ++
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL-----------------------D~ 412 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL-----------------------DN 412 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH-----------------------HH
Confidence 35778999999999999999999999998766 47888999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
|++.+..|-+.+|.++-.-+..-.+....|.-++|+..+.+....
T Consensus 413 A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 413 AVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999999999999999899999999999999999988876543
No 265
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.94 E-value=0.0026 Score=64.39 Aligned_cols=47 Identities=30% Similarity=0.803 Sum_probs=39.4
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhh-----cCCCCccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-----RGNKCPLCRAVL 246 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~-----~~~~Cp~cr~~~ 246 (476)
.....|.+|.+.-.+++..+|.|.||+.|+..... .+-.||.|-..+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 45678999999999999999999999999976554 234699998765
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.93 E-value=0.041 Score=49.34 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=71.8
Q ss_pred HHHHhccHHHHHHHHHHHhccCC---CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 56 RAFRESNFEEAISNYSRANNIKP---GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
.++..|++++|+..|.+++..+| .....+..++..+...+++ +.++..+.+++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY-----------------------EEALELLEKALK 195 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH-----------------------HHHHHHHHHHHh
Confidence 67788888888888888877766 3456666666667777778 888888888888
Q ss_pred cccc-chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 133 LQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 133 l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
..+. ....+..++..+...++++.|...+..++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 8887 6778888888888888888888888888887776
No 267
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0032 Score=63.26 Aligned_cols=49 Identities=39% Similarity=0.774 Sum_probs=36.9
Q ss_pred CCccccccccccccc-----Cc------------EEccCCCcccHhhHHHhhhcC-CCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLY-----EP------------ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~-----~P------------~~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~ 247 (476)
......|+||+.... .| ..+||.|.|+..|+.+|.+.- ..||.||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 344568999986532 11 235999999999999999954 47999999873
No 268
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.77 E-value=0.0095 Score=37.09 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
.+++++|.++...|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999988864
No 269
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0095 Score=55.47 Aligned_cols=52 Identities=19% Similarity=0.461 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccccccCc----------EEccCCCcccHhhHHHhhh--cCCCCccccccc
Q 011861 195 GTPERTDDFDCTLCLKLLYEP----------ITTPCGHSFCRSCLFQSMD--RGNKCPLCRAVL 246 (476)
Q Consensus 195 ~~~~~~~~~~C~iC~~~~~~P----------~~~~cgh~fC~~Cl~~~~~--~~~~Cp~cr~~~ 246 (476)
-+....++--|.+|...+... ..++|+|.|+..||..|-. +...||-|++.+
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 344556677899999776533 4689999999999999976 445699998876
No 270
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.73 E-value=0.014 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
.+++.+|.++..+|++++|...|.++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999988753
No 271
>PRK10941 hypothetical protein; Provisional
Probab=95.71 E-value=0.036 Score=53.39 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=66.6
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
..-..+.+.++|++|+.+....+.++|+++.-+..||.+|.++|.+ ..|..|++.-+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~-----------------------~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE-----------------------HVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-----------------------HHHHHHHHHHH
Confidence 3445578999999999999999999999999999999999999999 99999999999
Q ss_pred hccccchHHHHHHHHHH
Q 011861 132 NLQSNSMKSHLLKANAL 148 (476)
Q Consensus 132 ~l~p~~~~~~~~~~~~~ 148 (476)
+..|+.+.+..-+.++.
T Consensus 243 ~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 243 EQCPEDPISEMIRAQIH 259 (269)
T ss_pred HhCCCchhHHHHHHHHH
Confidence 99999988877666554
No 272
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.025 Score=53.13 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=66.1
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccC-CCCcccccchhHHHHHHHhhhc--cCCC-CCcccCCCCCCCCcchH-------
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYIRISQFLK--HRPP-SASEYRPLNGLDPTTHA------- 120 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~------- 120 (476)
...+.+.-.|.|.-.+..|.+.++.+ |.++.+.+.++.+.++.|+.-. ..++ -.++-+.+.+.--.+.|
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 35666677777777888888887776 7777777777777777776500 0000 00011111111111111
Q ss_pred -------HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 121 -------ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 121 -------~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
.+|...+.+.+..||.++.+...+|.|++.+|+..+|++.++.+++..|.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44445555555556666666666666666666666666666666655554
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.59 E-value=0.13 Score=48.56 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=95.6
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
+.....+..+++.++|+.|+...++-+++.|+.+ -+++.+|.+++..-+. ....+..+.+|+
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~---------------~~rDq~~~~~A~ 136 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD---------------VTRDQSAARAAF 136 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc---------------cccCHHHHHHHH
Confidence 4566778899999999999999999999999876 4555566664433332 344666779999
Q ss_pred HHHHHHhhccccch---------------HHHH--HHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 125 KDAEKLLNLQSNSM---------------KSHL--LKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 125 ~~~~~al~l~p~~~---------------~~~~--~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
..+...++--|++. .+.+ ..|.-|...|.|..|+.-++..++.-|+.+.....+..+.++...
T Consensus 137 ~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 137 AAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 99999999999742 1333 345567789999999999999999988888888888777665543
No 274
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.023 Score=54.31 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=79.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+.-....|-..|+.|+|+.|+..|+.|++....++.+-++.|.|+++.+++ ..|++.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy-----------------------asALk~ 200 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY-----------------------ASALKH 200 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH-----------------------HHHHHH
Confidence 455677888899999999999999999999999999999999999999999 999888
Q ss_pred HHHHhhcc----cc-------------------------chHHHHHHHHHHHhhhhHHHHHHHHhc
Q 011861 127 AEKLLNLQ----SN-------------------------SMKSHLLKANALILLERYDMARDAILS 163 (476)
Q Consensus 127 ~~~al~l~----p~-------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (476)
....++.. |. -.+++..++-++++.|+|+.|.+.+..
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 77766531 21 134788889999999999999987654
No 275
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.062 Score=52.20 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=57.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
--+..+|-..+.-|+|..||...++|+.++|....+++.-|.|++.+.++ ..|+.-|
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~-----------------------~~a~nw~ 176 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF-----------------------AEAVNWC 176 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH-----------------------HHHHHHH
Confidence 34455666778889999999999999999999999999999999999999 9999988
Q ss_pred HHHhhccc
Q 011861 128 EKLLNLQS 135 (476)
Q Consensus 128 ~~al~l~p 135 (476)
+..+.++-
T Consensus 177 ee~~~~d~ 184 (390)
T KOG0551|consen 177 EEGLQIDD 184 (390)
T ss_pred hhhhhhhH
Confidence 88877663
No 276
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.56 E-value=0.11 Score=51.76 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=102.2
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
...+++.....+|-.-+..|||.+|.+...++-+..+.-...|..-|.+--++|++ +
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~-----------------------~ 135 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDE-----------------------D 135 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccH-----------------------H
Confidence 45567888888999999999999999999998888887778888888899999999 9
Q ss_pred HHHHHHHHHhhcccc-chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 122 LALKDAEKLLNLQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 122 ~a~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
.+-....+|-+.-++ .-..+..++..+...|+|+.|.....+.++..|.++.+.....++--
T Consensus 136 ~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~ 198 (400)
T COG3071 136 RANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 999999999999443 45577789999999999999999999999999999988766555433
No 277
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.53 E-value=0.025 Score=56.22 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCC------CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP------GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
.+++...||.+.-.|+|+-|+++|..++.+.- -.+..-+.+|..|..+.++
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~----------------------- 291 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV----------------------- 291 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH-----------------------
Confidence 45667789999999999999999999876632 1234456788999999999
Q ss_pred HHHHHHHHHHhhccc------cchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 121 ELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 121 ~~a~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++||.+..+.+.+-. ....++|.+|.++..+|..+.|+.+.+..+++
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999877642 35679999999999999999999888777654
No 278
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.49 E-value=0.029 Score=39.62 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=35.6
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 011861 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~ 148 (476)
.++.+|.+++++|+| .+|.+.++.+++++|+|.++...+..+-
T Consensus 3 ~lY~lAig~ykl~~Y-----------------------~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEY-----------------------EKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 567899999999999 9999999999999999988876665543
No 279
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.47 E-value=0.031 Score=56.80 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHH-hccCCC--------CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRA-NNIKPG--------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
+..+..+.+.+|..|+|.+|.+.+... |...|. .-.+|.|+|-+++++|.|
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y-------------------- 299 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY-------------------- 299 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--------------------
Confidence 456778899999999999999987654 333343 236789999999999999
Q ss_pred chHHHHHHHHHHHhh-c--------c---------ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 118 THAELALKDAEKLLN-L--------Q---------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 118 ~~~~~a~~~~~~al~-l--------~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
..+...|.+|++ . . .......|+.|..|...|+...|.+.|.++.+..-.|+-+|..+.
T Consensus 300 ---~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 300 ---QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred ---HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999999986 1 1 135678999999999999999999999999998888888877665
Q ss_pred HH
Q 011861 180 NL 181 (476)
Q Consensus 180 ~~ 181 (476)
++
T Consensus 377 Ec 378 (696)
T KOG2471|consen 377 EC 378 (696)
T ss_pred HH
Confidence 53
No 280
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.084 Score=51.70 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=75.6
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
-..++...||..||....-.+..+...- ....-.|.||+.+|+| ++|+..|.-+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY-----------------------~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY-----------------------EEALNVYTFLMN 85 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH-----------------------HHHHHHHHHHhc
Confidence 3457788999999999998887765433 5556689999999999 999999999988
Q ss_pred ccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 133 LQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
-+.-+.+...++|-+++.+|.|.+|.+...++-
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 776678888999999999999999999877763
No 281
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.06 E-value=0.087 Score=57.26 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=79.8
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
.....++|.+|++...+.++..|+-..+....|..+.++|+. ++|....+..-..-+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~-----------------------~ea~~~Le~~~~~~~ 74 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG-----------------------DEALKLLEALYGLKG 74 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc-----------------------hhHHHHHhhhccCCC
Confidence 356678899999999999999999999999999999999999 999966665555667
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
++...+-.+-.+|..++++++|...|+++...+|.
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 77778888899999999999999999999999998
No 282
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.0079 Score=44.79 Aligned_cols=29 Identities=28% Similarity=0.807 Sum_probs=24.2
Q ss_pred cCCCcccHhhHHHhhhcC---CCCcccccccc
Q 011861 219 PCGHSFCRSCLFQSMDRG---NKCPLCRAVLF 247 (476)
Q Consensus 219 ~cgh~fC~~Cl~~~~~~~---~~Cp~cr~~~~ 247 (476)
-|.|.|...||.+|+... ..||+||+.+.
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 699999999999999732 34999999763
No 283
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.93 E-value=0.006 Score=64.54 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=37.6
Q ss_pred cccccccccccccCcEE---ccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 201 DDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~---~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
..-.|++|+..+.+-.. ..|+|.||..|+..|-.....||+||..+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 45578888876655432 48999999999999999989999999886
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.89 E-value=0.049 Score=32.52 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=29.2
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (476)
..+...|..++..+++++|+..|.++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 346788999999999999999999999998863
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.87 E-value=0.0092 Score=38.48 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 140 SHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
+|..+|.+|...|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999976543
No 286
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.85 E-value=0.09 Score=52.23 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=62.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
..-....+..+.+-|++++|.+...++++..-+.. +.... -..+.+++ ..=++.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~-----------------------~~l~k~ 316 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDP-----------------------EPLIKA 316 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCc-----------------------hHHHHH
Confidence 34445566677777888888888777777632221 11111 11233444 445556
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
.++.+...|+++..++.+|..++..+.|.+|..+|+++++..|+..+
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 66777777777777777777777777777777777777776665444
No 287
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=94.82 E-value=0.11 Score=52.80 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=64.3
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc--------ccccchhHH--H-----HHHHhhhccCCCCCccc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IVLGNRSSA--Y-----IRISQFLKHRPPSASEY 108 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~--------~~~~~~a~~--~-----~~~~~~~~~~~~~~~~~ 108 (476)
..........|..+|..|+|.+|+..|...|..-|--. ++...+..| | +.+.+- .
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr--~-------- 270 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERR--E-------- 270 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--------
Confidence 34455667789999999999999999999987633211 111111111 1 111111 0
Q ss_pred CCCCCCCCcc--hHHHH--HHHHHHHhhccccchHHHHHHHHHH-HhhhhHHHHHHHHhcccccCCCCch
Q 011861 109 RPLNGLDPTT--HAELA--LKDAEKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 109 ~~~~~~~~~~--~~~~a--~~~~~~al~l~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+...+ ..++. +..|=-...|.|.+...-++.|+.. +..++|.-|....++.|+++|..+.
T Consensus 271 -----l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 271 -----LPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp -----S-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred -----ccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 00000 00111 2222234456777777777777765 6899999999999999999987554
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.78 E-value=0.11 Score=41.16 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
..+..++++++.+|++..+.+.+|..+...|+|++|++.+...++.++++.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 346778899999999999999999999999999999999999999998763
No 289
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.68 E-value=0.013 Score=44.06 Aligned_cols=46 Identities=24% Similarity=0.696 Sum_probs=22.4
Q ss_pred cccccccccccc-C---cEE----ccCCCcccHhhHHHhhhc---C-----C---CCcccccccc
Q 011861 202 DFDCTLCLKLLY-E---PIT----TPCGHSFCRSCLFQSMDR---G-----N---KCPLCRAVLF 247 (476)
Q Consensus 202 ~~~C~iC~~~~~-~---P~~----~~cgh~fC~~Cl~~~~~~---~-----~---~Cp~cr~~~~ 247 (476)
+..|.||..... + |.. ..|+..|+..||.+|+.. . . .||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998754 2 222 269999999999999862 1 1 3999998874
No 290
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.67 E-value=0.14 Score=39.04 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..++...++|-.+|.+.+.++|+....++++..++.+ .++..++.+|...|+| .
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gky-----------------------r 60 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKY-----------------------R 60 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------------------H
Confidence 3467789999999999999999999999999987765 5566678899999999 8
Q ss_pred HHHHHHHHHhhc
Q 011861 122 LALKDAEKLLNL 133 (476)
Q Consensus 122 ~a~~~~~~al~l 133 (476)
+.++.+..-+++
T Consensus 61 ~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 61 EMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHH
Confidence 877776665554
No 291
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.66 E-value=0.03 Score=38.91 Aligned_cols=40 Identities=23% Similarity=0.714 Sum_probs=30.8
Q ss_pred ccccccc--cccCcEEccCC-----CcccHhhHHHhhhcC--CCCcccc
Q 011861 204 DCTLCLK--LLYEPITTPCG-----HSFCRSCLFQSMDRG--NKCPLCR 243 (476)
Q Consensus 204 ~C~iC~~--~~~~P~~~~cg-----h~fC~~Cl~~~~~~~--~~Cp~cr 243 (476)
.|.||++ .-.+|...||. +.++..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788886 44567778986 668999999999743 4699984
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.65 E-value=0.038 Score=35.53 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
+...|+.+.+.|+|++|+.+|.+++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999996654
No 293
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.62 E-value=0.015 Score=40.81 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=35.7
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....|-+|...-...+.++|||..|..|... .+-+.||.|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCccc
Confidence 4557888888888889999999999999743 23456999998874
No 294
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.018 Score=56.48 Aligned_cols=42 Identities=29% Similarity=0.743 Sum_probs=31.9
Q ss_pred ccccccccccccCcE---Ec-cCCCcccHhhHHHhhhcC---CCCcccc
Q 011861 202 DFDCTLCLKLLYEPI---TT-PCGHSFCRSCLFQSMDRG---NKCPLCR 243 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~---~~-~cgh~fC~~Cl~~~~~~~---~~Cp~cr 243 (476)
-..|.||.+...+-- .+ .|||+|+..|+.+|+... ..||.|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 357999976554432 23 599999999999999843 3699998
No 295
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.59 E-value=0.12 Score=54.15 Aligned_cols=95 Identities=21% Similarity=0.146 Sum_probs=66.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
+.-++.+|+.+..+|+.++||..|++++...... ...++.+|.+|..+.+| ++
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w-----------------------~~ 323 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW-----------------------EE 323 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH-----------------------HH
Confidence 4456677888888888888888888887543322 36677788888888888 88
Q ss_pred HHHHHHHHhhccccchHHHH--HHHHHHHhhhhH-------HHHHHHHhccc
Q 011861 123 ALKDAEKLLNLQSNSMKSHL--LKANALILLERY-------DMARDAILSGL 165 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~--~~~~~~~~~~~~-------~~A~~~~~~~l 165 (476)
|...+.+.++.+ ++.++.| ..|-++..+|+. ++|...|.++-
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888887754 3445433 466667777777 66666665553
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.53 E-value=0.042 Score=50.71 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (476)
...++.+|++.|.+.|.+|+.+.|.+..-|+..|....+.|++ +.|.+.|++.+++|
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~-----------------------daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF-----------------------DAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH-----------------------HHHHHHHHHHHcCC
Confidence 4567789999999999999999999999999999999999999 99999999999999
Q ss_pred ccchH
Q 011861 135 SNSMK 139 (476)
Q Consensus 135 p~~~~ 139 (476)
|....
T Consensus 60 p~D~~ 64 (287)
T COG4976 60 PEDHG 64 (287)
T ss_pred ccccc
Confidence 97643
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.25 Score=45.85 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=76.2
Q ss_pred HHhhHHHHHh-ccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 51 VQKGNRAFRE-SNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 51 ~~~g~~~~~~-~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
.+-|..|-.. .++++||.+|.+|-+..-.+ ...+...|+.-..+++| .+|
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY-----------------------~~A 173 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY-----------------------SKA 173 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 3444444444 78999999999998764332 25556667777778888 899
Q ss_pred HHHHHHHhhcccc------chHHHHH-HHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 124 LKDAEKLLNLQSN------SMKSHLL-KANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 124 ~~~~~~al~l~p~------~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++.|++.....-+ ..+.|+. .|.|++-..+.-.+...+++..+++|...+.++
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 9998887765433 3557775 456677778998999999999999999888765
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.48 E-value=0.063 Score=33.20 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=29.3
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCC
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (476)
+++..|..+++.|++++|+..|++.++..|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57788999999999999999999999999863
No 299
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.48 E-value=0.094 Score=45.43 Aligned_cols=62 Identities=19% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+...+..+...|++++|+..+.+++..+|.+-.+|..+-.+|..+|+. ..|++.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~-----------------------~~A~~~Y 119 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR-----------------------AEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH-----------------------HHHHHHH
Confidence 34555677788899999999999999999999999999999999999999 9999988
Q ss_pred HHHhh
Q 011861 128 EKLLN 132 (476)
Q Consensus 128 ~~al~ 132 (476)
++..+
T Consensus 120 ~~~~~ 124 (146)
T PF03704_consen 120 ERYRR 124 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 300
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.48 E-value=0.022 Score=56.43 Aligned_cols=36 Identities=28% Similarity=0.850 Sum_probs=31.6
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR 235 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~ 235 (476)
++++.|++|...+.+|+.++|||+.|+.|....+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 467899999999999999999999999998765543
No 301
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.033 Score=52.62 Aligned_cols=41 Identities=32% Similarity=0.808 Sum_probs=33.8
Q ss_pred ccccccccccccCcEEccCCCcc-cHhhHHHhhhcCCCCccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSF-CRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~f-C~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
..-|.||++...+.+.++|||.. |..|=. .-..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk----rm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc----ccccCchHHHHH
Confidence 67899999999999999999964 888843 223799999865
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.44 E-value=0.034 Score=51.26 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
+.+.+.|.+|+++-|.|..+|+++|......|+++.|.+.|.+.++++|.+...
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 888999999999999999999999999999999999999999999999987754
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.22 Score=48.62 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=88.1
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
++-..+.+|++-+|-...++.++-.|+|-.++...-.+|+.+|+. ......+++.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~-----------------------~~~k~ai~kIip 165 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ-----------------------IGKKNAIEKIIP 165 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch-----------------------hhhhhHHHHhcc
Confidence 445568889999999999999999999999999989999999998 777777788887
Q ss_pred c-cccchHHHHH---HHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 133 L-QSNSMKSHLL---KANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 133 l-~p~~~~~~~~---~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
. ||+.+-.-|. .+.++...|-|++|.....+++++||++..+.-...-+-
T Consensus 166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 6 7777554443 456778999999999999999999999988766555443
No 304
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.19 E-value=0.017 Score=53.50 Aligned_cols=60 Identities=30% Similarity=0.754 Sum_probs=38.6
Q ss_pred ccccccccc-cCcE-EccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 204 DCTLCLKLL-YEPI-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 204 ~C~iC~~~~-~~P~-~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
.|.-|..-- ..|. .+.|+|.||..|.... ....||.|++.+. ...++..|...+..+|.+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir----~i~l~~slp~~ik~~F~d 66 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIR----IIQLNRSLPTDIKSYFAD 66 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceee----eeecccccchhHHHHccC
Confidence 466666433 4554 4599999999997532 2237999999863 345555555666665544
No 305
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.14 E-value=0.13 Score=54.00 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=78.4
Q ss_pred HhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccch
Q 011861 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (476)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (476)
...+.+.|.....+..+..|+....++..|..+...|+. ++|++.+++++.....+.
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~-----------------------~~Ai~~~~~a~~~q~~~~ 301 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL-----------------------EEAIESFERAIESQSEWK 301 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH-----------------------HHHHHHHHHhccchhhHH
Confidence 456778899999999999999999999999999999999 999999999997655543
Q ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 139 ----KSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 139 ----~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
-.+|.+|++++.+.+|++|...|.+..+.+.
T Consensus 302 Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 302 QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 3888999999999999999999999988553
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.03 Score=55.32 Aligned_cols=45 Identities=27% Similarity=0.733 Sum_probs=36.6
Q ss_pred ccccccccccccCc-----EEccCCCcccHhhHHHhhhcC--CCCccccccc
Q 011861 202 DFDCTLCLKLLYEP-----ITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~~P-----~~~~cgh~fC~~Cl~~~~~~~--~~Cp~cr~~~ 246 (476)
-.+|++|++.+.-| +.+.|||-|-..|+++|+.+. +.||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 35899999988776 457999999999999999743 3499998653
No 307
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=0.37 Score=45.61 Aligned_cols=61 Identities=21% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+.|.-.|+..-+.-|-.+.....++.+.+.+|+|++|...++.+|..++.+++...++--+
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 5555666665554455667778888889999999999999999999999998876554333
No 308
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.87 E-value=0.048 Score=53.22 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=62.8
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+.-+..+|..+++.++...||..|+.|++++|+...-|-.|+.++..+|+| .+|..
T Consensus 147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~-----------------------e~aa~ 203 (377)
T KOG1308|consen 147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW-----------------------EEAAH 203 (377)
T ss_pred hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch-----------------------HHHHH
Confidence 3566778899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcccc
Q 011861 126 DAEKLLNLQSN 136 (476)
Q Consensus 126 ~~~~al~l~p~ 136 (476)
++..|++++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999998743
No 309
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.049 Score=52.39 Aligned_cols=50 Identities=26% Similarity=0.487 Sum_probs=42.1
Q ss_pred CCCCcccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
....+.-.|++|+....+|..+ -.|.-||..|+.....+...||++..+.
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3345667899999999999765 6799999999999999888999987654
No 310
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.035 Score=43.99 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=25.7
Q ss_pred cCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 219 ~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
.|.|.|+..||.+|+.....||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 6999999999999999999999998753
No 311
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.062 Score=49.94 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..|+..|.+||.++|..+..|-+++.+++.+.+++.+..+-.++++++|+.....-++...
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877665554443
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.62 E-value=0.26 Score=45.96 Aligned_cols=101 Identities=20% Similarity=0.048 Sum_probs=68.3
Q ss_pred HHHHhccHHHHHHHHHHHhccCC----CC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 56 RAFRESNFEEAISNYSRANNIKP----GD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p----~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+-....+++|+..|.-|+-..- .. +.++..+|-.|..+++. +.+-.++ ..|+..|.
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~-------~~E~~fl---------~~Al~~y~ 149 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE-------ENEKRFL---------RKALEFYE 149 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH-------HHHHHHH---------HHHHHHHH
Confidence 44556789999999999976522 11 23334444444444432 1122222 88888899
Q ss_pred HHhhcccc------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 129 KLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 129 ~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+|++.... .....|.+|.....+|++++|+..|.+.+.....+.
T Consensus 150 ~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 150 EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 98876532 356888999999999999999999999987644443
No 313
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.61 E-value=0.16 Score=56.21 Aligned_cols=105 Identities=8% Similarity=-0.059 Sum_probs=82.0
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCC--CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
.+..--..+.+.|++++|...|++..+..+- +...|..+..+|.+.|++ ++|.+.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~-----------------------~eA~~~ 484 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL-----------------------DEAYAM 484 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH-----------------------HHHHHH
Confidence 3666667788899999999999999764322 346788899999999999 999888
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
+++. ...|+ ...|..+..++...|+++.|...+++.++++|++......+
T Consensus 485 ~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 485 IRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 7654 33443 45677888888999999999999999999999876654433
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.60 E-value=0.52 Score=42.53 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=72.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+...|+-|.+.||+++|++.|.++.....+. ...+.+.-.+.+..++| ...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~-----------------------~~v 92 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW-----------------------SHV 92 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH-----------------------HHH
Confidence 3567789999999999999999999998886543 26677777788888888 777
Q ss_pred HHHHHHHhhcccc----chH--HHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 124 LKDAEKLLNLQSN----SMK--SHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 124 ~~~~~~al~l~p~----~~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
.....+|-.+-.. ..+ ..-..|..++..|+|.+|...|..+..
T Consensus 93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 6666666655322 122 233566777889999999999988764
No 315
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.50 E-value=0.19 Score=48.42 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|...++.|+.++|++++++...|+..-.-++.-+|-..|.++|.++|.|..+..+..+.-
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 99999999999999999999999999998889999999999999999999998776554433
No 316
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.37 E-value=0.5 Score=46.02 Aligned_cols=97 Identities=19% Similarity=-0.009 Sum_probs=75.9
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHH-HhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
..+..-+.+..+.|...|.+|.+..+....+|...|..-+.. ++. ..|.+.|+.++
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~-----------------------~~A~~Ife~gl 63 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP-----------------------KRARKIFERGL 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH-----------------------HHHHHHHHHHH
Confidence 344444556689999999999977777788888888886664 445 56999999999
Q ss_pred hccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 132 NLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 132 ~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+.-|.+...+..-..-+...++.+.|+..|++++..-|.+.
T Consensus 64 k~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 64 KKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 99999999888888888899999999999999998766555
No 317
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=0.56 Score=44.40 Aligned_cols=92 Identities=10% Similarity=0.091 Sum_probs=57.1
Q ss_pred hhhhhHHHHHHhhHHHHHhccH-HHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNF-EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~-~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
++.......+++--.-++.+.- +..+....+=+. ..-+.++.++.-+|.|
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy----------------------- 193 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEY----------------------- 193 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhh-----------------------
Confidence 3344455556666666777776 567777776544 2344556677777777
Q ss_pred HHHHHHHHHHhhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHh
Q 011861 121 ELALKDAEKLLNLQ-SNSMKSHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 121 ~~a~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
.-++..+.++++.+ |..+.....+|.+-++.|+.+.|..+|+
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666665 6666666666666666666666655555
No 318
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.3 Score=46.54 Aligned_cols=72 Identities=21% Similarity=0.373 Sum_probs=64.1
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
=..+.+.++++.|...-++.+.++|+++.-+..||.+|.++|-+ .-|+.++...++.
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~-----------------------~vAl~dl~~~~~~ 244 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY-----------------------HVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc-----------------------hhhHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHHHH
Q 011861 134 QSNSMKSHLLKANAL 148 (476)
Q Consensus 134 ~p~~~~~~~~~~~~~ 148 (476)
.|+.+.+-.-++...
T Consensus 245 ~P~~~~a~~ir~~l~ 259 (269)
T COG2912 245 CPDDPIAEMIRAQLL 259 (269)
T ss_pred CCCchHHHHHHHHHH
Confidence 999887766555443
No 319
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.03 E-value=0.57 Score=42.12 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=81.1
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh-c
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN-L 133 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-l 133 (476)
...-++=|.++++...++.+...|+. .-.+.+|.+...+|++ .+|...|.+++. +
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~-----------------------~EA~~hy~qalsG~ 119 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRY-----------------------HEAVPHYQQALSGI 119 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhh-----------------------hhhHHHHHHHhccc
Confidence 33445568888899999999999976 5567889999999999 999999999886 5
Q ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 134 QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 134 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
--+++..++.++++.+..+++.+|...++...+.+|....
T Consensus 120 fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 120 FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 5778888999999999999999999999999998885443
No 320
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.02 E-value=0.46 Score=40.32 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=55.0
Q ss_pred hccHHHHHHHHHHHhc-cCCCC-cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc
Q 011861 60 ESNFEEAISNYSRANN-IKPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~-~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (476)
..|-++.|.++...++ -+|.. -+..+.+|..|+++++| ++++.+.+..++.+|+|
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY-----------------------~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY-----------------------SKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH-----------------------HHHHHHHHHHHhhCCCc
Confidence 3577889999999997 45543 48889999999999999 99999999999999999
Q ss_pred hHHHHHHHHHH
Q 011861 138 MKSHLLKANAL 148 (476)
Q Consensus 138 ~~~~~~~~~~~ 148 (476)
.++.-.+-.+.
T Consensus 105 ~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 105 RQALELKETIE 115 (149)
T ss_pred HHHHHHHHHHH
Confidence 88765554443
No 321
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.41 Score=46.80 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=82.6
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc-CCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI-KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
++...+++-.-..+|..|+.......+.+.+-. +|+- +-++-..|.++...|-|
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y---------------------- 191 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY---------------------- 191 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc----------------------
Confidence 344555566677789999999999999998877 6655 45556678888899999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
++|.+.+++|+++|+.+..+...++-++-..|++.++.+...+-
T Consensus 192 -~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 -DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred -hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999876654
No 322
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.66 E-value=0.89 Score=46.49 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=61.5
Q ss_pred HHhccHHHHHHHHHHHhccCCCC----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 58 FRESNFEEAISNYSRANNIKPGD----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
+...|.+.+...|+.+|++-|.. +.+|...|+--.+..+. ..|-+.+-.|+..
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l-----------------------~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL-----------------------TGARKILGNAIGK 433 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc-----------------------HHHHHHHHHHhcc
Confidence 44456666666666666666643 35555555555555555 6666666666666
Q ss_pred cccchHHHHHHHHHH--HhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 134 QSNSMKSHLLKANAL--ILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 134 ~p~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
.|.. -..+|.+- ..+++++.+...|++.++-.|.|-.++.....++..|+..
T Consensus 434 cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 434 CPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred CCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 6643 22333332 3566666666666666666666666666666666666554
No 323
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=0.87 Score=42.70 Aligned_cols=112 Identities=15% Similarity=-0.013 Sum_probs=77.1
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
+....+..+...+..+-...+|++|-.++.+|.+..-++. ..|..-|+..-.+..+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl------------------ 87 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL------------------ 87 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 3333344444555555566999999999999996654442 4455555666667777
Q ss_pred CcchHHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 116 PTTHAELALKDAEKLLNLQ-----SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
.++...+++|..+- |+-...-..+|--.....+.++|++.|++++.+-..+...+.
T Consensus 88 -----sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 88 -----SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred -----HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 99999999998873 444444555666667788999999999999887554444433
No 324
>PLN03077 Protein ECB2; Provisional
Probab=92.65 E-value=0.36 Score=54.76 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=74.9
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCC--CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
-..+.+.|++++|...|.+..+..+- +...|..+..+|.+.|++ ++|.+.+++.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~-----------------------~eA~~~~~~m- 651 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL-----------------------TEAYNFINKM- 651 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH-----------------------HHHHHHHHHC-
Confidence 34577889999999999988743222 346788899999999999 8888877664
Q ss_pred hccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 132 NLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 132 ~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
.+.|+ ...|..+-.++..-|+.+.|....++.++++|++......+.+
T Consensus 652 ~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n 699 (857)
T PLN03077 652 PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699 (857)
T ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Confidence 45564 4455555556777788888888888888889988776655443
No 325
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.094 Score=48.39 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=41.8
Q ss_pred CcccccccccccccCcE----EccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~----~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..-+.|++|...+.+.+ ..+|||.+|..|.++.......||+|..++.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 35789999999998874 3599999999999999998899999998873
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.39 E-value=0.35 Score=38.36 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccch
Q 011861 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (476)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (476)
.+..+.+++..+|+|..+.+.+|..+...|++ ..|++.+-.+++.++++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~-----------------------e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDY-----------------------EEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHhCcccc
Confidence 46778899999999999999999999999999 999999999999998873
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.35 E-value=0.6 Score=47.97 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHH
Q 011861 64 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL 143 (476)
Q Consensus 64 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~ 143 (476)
.+-...|..|+...+.|..+|.+...-.-+.+.+ .+--..|.+++...|+++..|..
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~-----------------------~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY-----------------------GEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch-----------------------hHHHHHHHHHHHhCCCCchhHHh
Confidence 4456779999999999999998876555455557 77888899999999999999988
Q ss_pred HHHHHHhhhh-HHHHHHHHhcccccCCCCchhhHHH
Q 011861 144 KANALILLER-YDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 144 ~~~~~~~~~~-~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
-|.=.+..+. .+.|++.|.++|..+|+++.++...
T Consensus 145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 8877776665 8999999999999999999987643
No 328
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.30 E-value=0.75 Score=50.33 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
..+...+|-.+++.|++++|..+....-...++|-..+..+..||..++++ ++|...
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~-----------------------d~~~~~ 99 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL-----------------------DEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh-----------------------hHHHHH
Confidence 345567888899999999999888888788888989999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
|++++..+|+ .+-.+.+=.+|.+-+.|.+-.+.--+..+.-|.++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999999999 77777777788888887654444444444445444
No 329
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.1 Score=51.17 Aligned_cols=46 Identities=33% Similarity=0.748 Sum_probs=34.9
Q ss_pred CCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
.......|.+|+...++.+.+||||.-| |..-.. .-..||+||+.+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 3455678999999999999999999865 664332 233499999876
No 330
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.25 E-value=0.33 Score=47.87 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhccccc-----hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 121 ELALKDAEKLLNLQSNS-----MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
.+++.+..-.+++-... ..++.-+|.++..++.|+.+++.|+.++.+..++.+.
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 45555444444443222 2466678888999999999999999998876555443
No 331
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.11 Score=49.36 Aligned_cols=43 Identities=33% Similarity=0.848 Sum_probs=32.8
Q ss_pred ccccccc-cccCcE----EccCCCcccHhhHHHhhhcCC-CCccccccc
Q 011861 204 DCTLCLK-LLYEPI----TTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL 246 (476)
Q Consensus 204 ~C~iC~~-~~~~P~----~~~cgh~fC~~Cl~~~~~~~~-~Cp~cr~~~ 246 (476)
.|+.|.- .+.+|- ..+|||+.|.+|....+..+. .||.|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 4777774 455662 239999999999999887554 599998876
No 332
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.90 E-value=0.41 Score=54.53 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=77.8
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc-----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
.....|..++..|++++|...+.+++...+... .++..+|.++...|++ ++|
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~-----------------------~~A 510 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL-----------------------ARA 510 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 344567888999999999999999998655432 3567788899999999 999
Q ss_pred HHHHHHHhhcccc------chHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 124 LKDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 124 ~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
...+.+++..... ...++..+|.++...|++++|...+.+++.+
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999876432 1346678899999999999999999998875
No 333
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.13 Score=50.53 Aligned_cols=65 Identities=23% Similarity=0.537 Sum_probs=45.5
Q ss_pred cccccccccccc------CcEEccCCCcccHhhHHHhhhcCC-CCcccccccccCC---CCcccchhHHHHHHHh
Q 011861 202 DFDCTLCLKLLY------EPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITP---RTCAVSVTLNSIIQKN 266 (476)
Q Consensus 202 ~~~C~iC~~~~~------~P~~~~cgh~fC~~Cl~~~~~~~~-~Cp~cr~~~~~~~---~~~~~n~~l~~~~~~~ 266 (476)
...|.+|-+.+. .|..+.|||++|..|+.....+.. .||.||....... +.+..|..+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 346777776654 566778999999999998887654 4999999842111 4455666666666553
No 334
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.77 E-value=0.19 Score=42.01 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=39.1
Q ss_pred cccccccccccccCcEEc----cCCCcccHhhHHHhhh---cCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITT----PCGHSFCRSCLFQSMD---RGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~----~cgh~fC~~Cl~~~~~---~~~~Cp~cr~~~~ 247 (476)
...+|.||.+...+..-+ =||.+.|..|-.+.|. ..+.||.|+..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 578999999999888655 3999999999998776 3467999998874
No 335
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=0.31 Score=46.45 Aligned_cols=78 Identities=24% Similarity=0.186 Sum_probs=65.8
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (476)
....+.=.+|.+-+++ +.|+....+.+.++|+++.-+..+|.+|.++|.+..|+.++
T Consensus 182 rll~~lk~~~~~e~~~-----------------------~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl 238 (269)
T COG2912 182 RLLRNLKAALLRELQW-----------------------ELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDL 238 (269)
T ss_pred HHHHHHHHHHHHhhch-----------------------HHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHH
Confidence 3444455667777788 99999999999999999999999999999999999999999
Q ss_pred hcccccCCCCchhhHHHHHHH
Q 011861 162 LSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 162 ~~~l~l~p~~~~~~~~~~~~~ 182 (476)
...++.-|+++.+......+.
T Consensus 239 ~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 239 SYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHhCCCchHHHHHHHHHH
Confidence 999999999887655544443
No 336
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.57 E-value=0.086 Score=57.25 Aligned_cols=43 Identities=44% Similarity=0.982 Sum_probs=37.2
Q ss_pred cccccccccccCcEEccCCCcccHhhHHHhhhcC--CCCccccccc
Q 011861 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 246 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~--~~Cp~cr~~~ 246 (476)
+.|.+|.+ ...++...|||.||..|+...+... ..||.||..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 79999999 8888899999999999999887733 3599999765
No 337
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.52 E-value=2.4 Score=42.74 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHHhhHHHHH---hccHHHHHHHHHH-HhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 50 LVQKGNRAFR---ESNFEEAISNYSR-ANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 50 ~~~~g~~~~~---~~~~~~Ai~~y~~-al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
-...|..+-+ .|+.++|+..+.. .....+.+++.+...|.+|-.+-.- .. ...+...++|+.
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~--s~------------~~d~~~ldkAi~ 247 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE--SN------------FTDRESLDKAIE 247 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH--cC------------ccchHHHHHHHH
Confidence 3455666666 8999999999999 4556778899999999998665322 11 112222488999
Q ss_pred HHHHHhhccccchH---------------------------------------------HHHHHHHHHHhhhhHHHHHHH
Q 011861 126 DAEKLLNLQSNSMK---------------------------------------------SHLLKANALILLERYDMARDA 160 (476)
Q Consensus 126 ~~~~al~l~p~~~~---------------------------------------------~~~~~~~~~~~~~~~~~A~~~ 160 (476)
-|.++.+++|+... .+-.++.+....|+++.|.++
T Consensus 248 ~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a 327 (374)
T PF13281_consen 248 WYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQA 327 (374)
T ss_pred HHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999988875321 222334455568899999999
Q ss_pred HhcccccCCCCchhhH
Q 011861 161 ILSGLQVDPFSNPLQA 176 (476)
Q Consensus 161 ~~~~l~l~p~~~~~~~ 176 (476)
+++++.++|..=....
T Consensus 328 ~e~~~~l~~~~W~l~S 343 (374)
T PF13281_consen 328 AEKAFKLKPPAWELES 343 (374)
T ss_pred HHHHhhcCCcchhHHH
Confidence 9998888754333333
No 338
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.35 E-value=1.1 Score=46.35 Aligned_cols=93 Identities=19% Similarity=0.050 Sum_probs=65.3
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHH-----HHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-----IRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+...+..+.++-|+.-.+|++++|+-+.+|..+|.=. ....-+ .+|++..+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~-----------------------rqAvkAgE~ 232 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELL-----------------------RQAVKAGEA 232 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHH-----------------------HHHHHHHHH
Confidence 3456789999999999999999999888877766521 111112 444444444
Q ss_pred Hhhccc---c---------------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 130 LLNLQS---N---------------SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 130 al~l~p---~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
++..+. . ..-+..++|++...+|+.++|++.++..++.+|.
T Consensus 233 ~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 233 SLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 443321 0 1225567899999999999999999999988875
No 339
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.31 E-value=2.3 Score=43.41 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=69.5
Q ss_pred hhhhHHHHHHhhHHHHHhcc-HHHHHHHHHHHhccCCCCccc---------------ccchhHHH-HHHHhhhccCCCCC
Q 011861 43 RYTHVFDLVQKGNRAFRESN-FEEAISNYSRANNIKPGDPIV---------------LGNRSSAY-IRISQFLKHRPPSA 105 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~-~~~Ai~~y~~al~~~p~~~~~---------------~~~~a~~~-~~~~~~~~~~~~~~ 105 (476)
..+-+.-++.-|..+.+.|. -++|+.....+++..|.|.+. +...+... ++++++++..
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~---- 450 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV---- 450 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 33444556667778888877 888999999999999888521 11111111 1233332111
Q ss_pred cccCCCCCCCCcchH--------------------HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 106 SEYRPLNGLDPTTHA--------------------ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 106 ~~~~~~~~~~~~~~~--------------------~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
|+.+.+.- .++.-...=..+++| ++.+|..+|.+++..++|++|-..+...
T Consensus 451 -------gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 451 -------GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred -------CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 11111110 334344444556789 9999999999999999999999988754
No 340
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.30 E-value=0.17 Score=48.68 Aligned_cols=48 Identities=25% Similarity=0.534 Sum_probs=38.1
Q ss_pred CCcccccccccccccCc--E--EccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEP--I--TTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P--~--~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....|.||++...|..- . ..+|||.|+..|+.+.. ....||.|..++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 45688999999888432 2 24999999999998874 4557999999885
No 341
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.28 E-value=0.69 Score=51.20 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=60.2
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhcc--CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
.|......|.+.|++++|+..|.+..+. .| |...|..+..++.+.|++ ++|.+.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~-----------------------~~a~~i 347 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALL-----------------------EHAKQA 347 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccch-----------------------HHHHHH
Confidence 3444555666677777777777776543 33 345666666677777777 677666
Q ss_pred HHHHhhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 127 AEKLLNLQ-SNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 127 ~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
+...++.. +.+...+..+...|...|++++|...|.+..+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 66666654 34455666677777777777777777776654
No 342
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=1.5 Score=41.75 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=77.6
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.+.++.|.-.|.+.-+..|..+.++...|.|++.+|+| .+|....+.|+.-+++.+.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-----------------------eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-----------------------EEAESLLEEALDKDAKDPE 242 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-----------------------HHHHHHHHHHHhccCCCHH
Confidence 35688888889988887777889999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH-hcccccCCCCchhh
Q 011861 140 SHLLKANALILLERYDMARDAI-LSGLQVDPFSNPLQ 175 (476)
Q Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~-~~~l~l~p~~~~~~ 175 (476)
.+.++--+-...|+-.++...+ .+....+|+.+-+.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 9999988888888887776654 44445566665543
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.07 E-value=1.3 Score=44.01 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC---------------------------CcccccchhHHHHHHHhhhc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG---------------------------DPIVLGNRSSAYIRISQFLK 99 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~---------------------------~~~~~~~~a~~~~~~~~~~~ 99 (476)
..-..+.++....+|+..+|+......++.... +..-...+|.++..+|+|..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 344667788888899999999999888882111 12233567899999999954
Q ss_pred cCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhH-----------------HHHHHHHh
Q 011861 100 HRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERY-----------------DMARDAIL 162 (476)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-----------------~~A~~~~~ 162 (476)
... . .......+.++..|..|++++|++.++|+..|..+...-+. ..|+..|-
T Consensus 264 ~~~-~---------~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 333 (352)
T PF02259_consen 264 ELY-S---------KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYL 333 (352)
T ss_pred hhc-c---------ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHH
Confidence 331 0 01223338899999999999999999999999887643222 23666777
Q ss_pred cccccCCC
Q 011861 163 SGLQVDPF 170 (476)
Q Consensus 163 ~~l~l~p~ 170 (476)
+++.+.+.
T Consensus 334 ~al~~~~~ 341 (352)
T PF02259_consen 334 KALSLGSK 341 (352)
T ss_pred HHHhhCCC
Confidence 77766655
No 344
>PLN03218 maturation of RBCL 1; Provisional
Probab=90.63 E-value=1 Score=51.91 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=18.8
Q ss_pred HHHhccHHHHHHHHHHHhccC-CCCcccccchhHHHHHHHhh
Q 011861 57 AFRESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~ 97 (476)
|.+.|++++|+..|.++.+.. +.+...|..+..+|.+.|++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 444455555555555544443 22334444444444444444
No 345
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.52 E-value=0.63 Score=53.05 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=77.9
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..+...|..+...|++++|...|.+++...... ..++.++|.+++..|++ +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~-----------------------~ 548 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL-----------------------Q 548 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH-----------------------H
Confidence 344556777889999999999999999764422 24567789999999999 9
Q ss_pred HHHHHHHHHhhcccc--------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 122 LALKDAEKLLNLQSN--------SMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 122 ~a~~~~~~al~l~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
.|...+++++++... ....+..+|.++...|++++|...+.+++.+..
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 999999998886322 123456788999999999999999999987643
No 346
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.42 E-value=0.35 Score=39.43 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=25.7
Q ss_pred CCcccccccccccccCcE--EccCCCcccHhhHH
Q 011861 199 RTDDFDCTLCLKLLYEPI--TTPCGHSFCRSCLF 230 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~--~~~cgh~fC~~Cl~ 230 (476)
..+...|++|...+.+.+ .+||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 445667999999888664 46999999999974
No 347
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.37 E-value=2 Score=44.11 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=87.6
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+..-|+--..+++++.|.+.|.+||..+..+..+|...|.+-++.... ..|-...++
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v-----------------------NhARNv~dR 132 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV-----------------------NHARNVWDR 132 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH-----------------------hHHHHHHHH
Confidence 334455566789999999999999999999999999999999999888 889899999
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
|+.+-|.-.+.||-.-..--.+|+...|.+.|++=++..|+...
T Consensus 133 Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 133 AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 99999998888777666566899999999999999999887554
No 348
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.26 E-value=0.2 Score=48.52 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=38.2
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhh--hcCCCCcccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM--DRGNKCPLCRAV 245 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~--~~~~~Cp~cr~~ 245 (476)
.++...|.||-+.+.--..+||+|..|.-|-.+.- -+.+.||.||..
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 34566899999988777789999999999986543 377889999975
No 349
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=90.19 E-value=0.2 Score=47.60 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=25.2
Q ss_pred ccccccccccccc-Cc--EEccCCCcccHhhHHHhh
Q 011861 201 DDFDCTLCLKLLY-EP--ITTPCGHSFCRSCLFQSM 233 (476)
Q Consensus 201 ~~~~C~iC~~~~~-~P--~~~~cgh~fC~~Cl~~~~ 233 (476)
...+|.||+.-|. .| ..++|-|.|+..|+-+.+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHH
Confidence 5678999998664 44 346999999999997543
No 350
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.07 E-value=0.94 Score=44.10 Aligned_cols=108 Identities=12% Similarity=0.016 Sum_probs=79.9
Q ss_pred HHHhhHHHHH-hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 50 LVQKGNRAFR-ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 50 ~~~~g~~~~~-~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
+...|...+. .+|.+.|...|..+++..|.+..+|......+..+++. ..|-..++
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~-----------------------~~aR~lfe 94 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI-----------------------NNARALFE 94 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH-----------------------HHHHHHHH
Confidence 4455666566 57777799999999999999999999999999999999 99999999
Q ss_pred HHhhccccch-H--HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 129 KLLNLQSNSM-K--SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 129 ~al~l~p~~~-~--~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+++..-|... . .|-....-=...|+.+.......++.+.-|.+..+.....+
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999877665 2 22233333357889999999999999988886655544433
No 351
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.14 Score=53.55 Aligned_cols=39 Identities=28% Similarity=0.735 Sum_probs=29.8
Q ss_pred cccccccccccc----CcEEccCCCcccHhhHHHhhhcCCCCc
Q 011861 202 DFDCTLCLKLLY----EPITTPCGHSFCRSCLFQSMDRGNKCP 240 (476)
Q Consensus 202 ~~~C~iC~~~~~----~P~~~~cgh~fC~~Cl~~~~~~~~~Cp 240 (476)
.+.|+||...+. .|+.+.|||+.|+.|+.........||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCPTK 53 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCCCC
Confidence 457899976653 789999999999999987766543333
No 352
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.03 E-value=0.44 Score=46.06 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=77.5
Q ss_pred HHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHH-H
Q 011861 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL-K 144 (476)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~-~ 144 (476)
-+-.|.++...-|+|+.+|...+....+.+-| .+--..|..++...|.+...|.. -
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y-----------------------~~~~nI~~~~l~khP~nvdlWI~~c 148 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYAAYVIKKKMY-----------------------GEMKNIFAECLTKHPLNVDLWIYCC 148 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhcCCCCceeeeeec
Confidence 34456777778899999999988777788888 88888999999999999998776 5
Q ss_pred HHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 145 ANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 145 ~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+.-+...++++.|+..|.+++.+||.++.++-..-+
T Consensus 149 ~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 149 AFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred cchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 566788999999999999999999999998754433
No 353
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.99 E-value=0.43 Score=48.84 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=68.5
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhc-c--------CC---------CCcccccchhHHHHHHHhhhccCCCCCcccCC
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANN-I--------KP---------GDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 110 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~-~--------~p---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 110 (476)
.+-..|-.+|+.|.|+-++.+|.+|++ . .| ...++++|.|..|+..|+.
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP------------- 351 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP------------- 351 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc-------------
Confidence 345678888999999999999999996 1 22 1248999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHh
Q 011861 111 LNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALIL 150 (476)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~ 150 (476)
-.|.+.+.+|+..--.++..|+++|.|++.
T Consensus 352 ----------l~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 352 ----------LLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ----------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 354
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.97 E-value=0.21 Score=33.78 Aligned_cols=43 Identities=28% Similarity=0.751 Sum_probs=25.5
Q ss_pred cccccccccccCcEEccCC-CcccHhhHHHhhhcCCCCcccccccc
Q 011861 203 FDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~~cg-h~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
+.|.-|+-..+. .+.|. |..|..|+...+..+..||.|..+++
T Consensus 3 ~nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCWFANKG--LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ----SS-S--SS--EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred ccChhhhhcCCC--eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 356777744443 56777 56699999998888999999998873
No 355
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.81 E-value=0.21 Score=34.28 Aligned_cols=41 Identities=37% Similarity=0.860 Sum_probs=20.0
Q ss_pred cccccccccCc--EEc--cCCCcccHhhHHHhhh-cCCCCcccccc
Q 011861 205 CTLCLKLLYEP--ITT--PCGHSFCRSCLFQSMD-RGNKCPLCRAV 245 (476)
Q Consensus 205 C~iC~~~~~~P--~~~--~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~ 245 (476)
|++|.+.+..- -.. +||+..|+.|...... .+..||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 67777776322 112 7899999999988876 45679999975
No 356
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.71 E-value=2.4 Score=43.81 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=53.4
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc--chHHHHHHHHHHHhhhhHHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN--SMKSHLLKANALILLERYDMARD 159 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~ 159 (476)
-+...+|+|..++|+. ++|++.++..++.+|. +...++++-.+++.++.|.++..
T Consensus 260 y~KrRLAmCarklGr~-----------------------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRL-----------------------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhHHHHHHHHHHhCCh-----------------------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 3445688999999999 9999999999988775 45689999999999999999999
Q ss_pred HHhcccc
Q 011861 160 AILSGLQ 166 (476)
Q Consensus 160 ~~~~~l~ 166 (476)
.+.+.-+
T Consensus 317 lL~kYdD 323 (539)
T PF04184_consen 317 LLAKYDD 323 (539)
T ss_pred HHHHhcc
Confidence 9988643
No 357
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.60 E-value=1.3 Score=51.21 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=59.2
Q ss_pred hHHHHHhccHHHHHHHHHHHhc----cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 54 GNRAFRESNFEEAISNYSRANN----IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~----~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
...+.+.|++++|...|.+... +.|+ ...|..+..+|.+.|++ ++|.+.++.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~l-----------------------deA~elf~~ 604 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQV-----------------------DRAKEVYQM 604 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCH-----------------------HHHHHHHHH
Confidence 4445566777777777776654 2343 35666666677777777 777777777
Q ss_pred Hhhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 130 LLNLQ-SNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 130 al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
..+.+ +.+...|..+..+|...|++++|+..|....+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 77665 335566667777777777777777777766543
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.40 E-value=2.7 Score=39.29 Aligned_cols=94 Identities=20% Similarity=0.118 Sum_probs=62.7
Q ss_pred HHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHH-HhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 57 AFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
.|++++.++|+.++.+||++...- +..+..+|..|..- .++ .+|+..|++
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~-----------------------ekaI~~YE~ 139 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDF-----------------------EKAIAHYEQ 139 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHH-----------------------HHHHHHHHH
Confidence 466677788888888887775432 24444566666543 566 888999988
Q ss_pred Hhhcccc------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 130 LLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 130 al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
|-+.-.. --+.+.-.|.--..+++|..|++.|++.....-+|+-
T Consensus 140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 8775422 2345555566667899999999999987654434443
No 359
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.91 E-value=2.7 Score=36.97 Aligned_cols=106 Identities=17% Similarity=0.021 Sum_probs=85.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+.+-.......++.+.+...+.-.--+.|+.+.+-..-|..++..|+| .+|+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w-----------------------~dA~rl 66 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW-----------------------DDALRL 66 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 456777778888889999999999998889999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
++.+.+-.|.++-+--.++.|+..+|+.+= ..+...+++..+ ++.....
T Consensus 67 Lr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~L 115 (160)
T PF09613_consen 67 LRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARAL 115 (160)
T ss_pred HHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHH
Confidence 999999999999888899999998888752 222333444433 4444433
No 360
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.85 E-value=0.4 Score=41.55 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=25.1
Q ss_pred cccccccccccccCcEEcc------------CCCcc-cHhhHHHhh
Q 011861 201 DDFDCTLCLKLLYEPITTP------------CGHSF-CRSCLFQSM 233 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~------------cgh~f-C~~Cl~~~~ 233 (476)
++..|+||++...+.|.+- |+.+| ...||.++.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 3678999999999998763 56555 677887653
No 361
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=5.7 Score=37.45 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
+...+++|-.....-+.+.|+..|++++.+--++ .+.+...+.++.++.+|
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf----------------------- 166 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF----------------------- 166 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh-----------------------
Confidence 4556777888888999999999999998874332 37788889999999999
Q ss_pred HHHHHHHH----HHhhccc--cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 121 ELALKDAE----KLLNLQS--NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 121 ~~a~~~~~----~al~l~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
.+|...+. -+++.+. ...+++...-.+++...+|..|...++...++.....
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~ 224 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK 224 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC
Confidence 66644443 3444443 3344555555556677799999999999888765444
No 362
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.44 E-value=0.34 Score=31.58 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
..|..+|.+-+..++|+.|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46889999999999999999999999875
No 363
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.16 E-value=0.77 Score=39.67 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=44.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (476)
+.+...+++..+..|+|+-|....+.++..+|++..+...+|.+|.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999999999999999999998875
No 364
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.13 E-value=0.44 Score=46.06 Aligned_cols=45 Identities=29% Similarity=0.797 Sum_probs=30.6
Q ss_pred cccccccccccccCc--E--EccCCCcccHhhHHHhhhcC-CCCccccccc
Q 011861 201 DDFDCTLCLKLLYEP--I--TTPCGHSFCRSCLFQSMDRG-NKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P--~--~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~ 246 (476)
++. |++|++.+.-. - .-+||...|+.|...-..+- -.||.||...
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 344 99999987532 2 23788888999975443332 3599999754
No 365
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.00 E-value=4.7 Score=44.35 Aligned_cols=181 Identities=19% Similarity=0.247 Sum_probs=101.5
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHH-hhhccCCCCCcccCCCCCCC----
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLD---- 115 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~---- 115 (476)
.....+-.++|-.+...|+|.+|+.+|..+|-.-|-- ...=...+.-....+ .| +.|+.
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eY-------------i~gL~~E~~ 1054 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREY-------------IVGLSVELE 1054 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHH-------------Hhhheeeee
Confidence 3445667788999999999999999999998765521 111111222223333 22 11111
Q ss_pred ----CcchHHHH--HHHHHHHhhccccchHHHHHHH-HHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 116 ----PTTHAELA--LKDAEKLLNLQSNSMKSHLLKA-NALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 116 ----~~~~~~~a--~~~~~~al~l~p~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
+......+ ++.|-.-..+.|-+...-++.| ..++.+++|..|.....+.+++.|..+.+....+.. .+-+..
T Consensus 1055 Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~-~a~ekn 1133 (1202)
T KOG0292|consen 1055 RRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIK-QAAEKN 1133 (1202)
T ss_pred ecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHhhcC
Confidence 11222333 4455556778887776666665 557899999999999999999998877654332222 111111
Q ss_pred hcccCCCCCCCCc--ccccccccccccCcEE---ccCCCcccHhhHHHhhhcCCCCccccc
Q 011861 189 IGRRIHGTPERTD--DFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (476)
Q Consensus 189 ~~~~~~~~~~~~~--~~~C~iC~~~~~~P~~---~~cgh~fC~~Cl~~~~~~~~~Cp~cr~ 244 (476)
....-+... ..--.+|...+. |+. -.|.+.||..|..... .+..|-.|..
T Consensus 1134 ----p~Da~~l~yd~~n~f~iC~~t~~-Piy~g~p~~~cp~cga~y~~~~-~g~iCtvc~V 1188 (1202)
T KOG0292|consen 1134 ----PTDAYELNYDPHNPFVICGATYV-PIYRGRPDVSCPYCGACFVPSS-KGNICTVCDV 1188 (1202)
T ss_pred ----cccccccCcccCCCeeEecccce-eeecCCCCcCCCcccceecccc-CCceeeeeee
Confidence 111111111 112335554332 322 1466677888865432 3456877754
No 366
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.71 E-value=0.44 Score=30.98 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
.++..+|.+|...|+|++|...+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999998764
No 367
>PLN03077 Protein ECB2; Provisional
Probab=87.35 E-value=2.7 Score=47.73 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=71.0
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhcc--CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
..|......|.+.|+.++|+..|++..+. .|+. ..|..+-.++.+.|++ ++|.+
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v-----------------------~ea~~ 610 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMV-----------------------TQGLE 610 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChH-----------------------HHHHH
Confidence 33455566677889999999999988764 5544 5555666778888888 88988
Q ss_pred HHHHHhhc---cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 126 DAEKLLNL---QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 126 ~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
.++...+. .| +...|.-+..+|...|++++|.+.+++. .+.|+
T Consensus 611 ~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 611 YFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 88887743 34 3467778888889999999999888875 34444
No 368
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.66 Score=46.32 Aligned_cols=34 Identities=35% Similarity=0.816 Sum_probs=27.4
Q ss_pred cccccccccccccC--c-EEccCCCcccHhhHHHhhh
Q 011861 201 DDFDCTLCLKLLYE--P-ITTPCGHSFCRSCLFQSMD 234 (476)
Q Consensus 201 ~~~~C~iC~~~~~~--P-~~~~cgh~fC~~Cl~~~~~ 234 (476)
..+.|.||++...- . +.+||+|-||+.|+...++
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 57899999986543 3 4579999999999988765
No 369
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.65 E-value=0.51 Score=46.09 Aligned_cols=59 Identities=31% Similarity=0.601 Sum_probs=42.5
Q ss_pred CCcccccccccccccCcEE-ccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHH
Q 011861 199 RTDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~-~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~ 265 (476)
..+.++||+|...+..|+. =+=||.-|..|-. .....||.||.++. + ..+..++.+++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g----~-~R~~amEkV~e~ 104 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG----N-IRCRAMEKVAEA 104 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccc----c-HHHHHHHHHHHh
Confidence 4567899999999999854 3668999999964 23456999999874 1 134455555554
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.32 E-value=3.8 Score=46.45 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=82.5
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcc---cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
-.++++..+.|++|+..|.+.-.--|...+ +.+..|...+..-.- +.+ + ....+|+..+++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------~-~~~~~~~~~~~~ 544 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASE-------QGD--------P-RDFTQALSEFSY 544 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHh-------cCC--------h-HHHHHHHHHHHH
Confidence 355677788999999999999999998864 444555555443332 111 1 223777777766
Q ss_pred HhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 130 LLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.- -.|.-+--|+.+|.+|..+|+|++-++.|.-|++.-|..+.+......+
T Consensus 545 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 545 LH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred hc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 43 3467788899999999999999999999999999999999876554443
No 371
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.12 E-value=0.41 Score=54.28 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=41.8
Q ss_pred CCccccccccccccc-CcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 199 RTDDFDCTLCLKLLY-EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~-~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
....+.|.+|.+.+. .-..+.|||.+|..|...|+..+..||.|....
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 345679999999998 556789999999999999999999999997543
No 372
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=11 Score=35.87 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 011861 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (476)
+++...-.+|+..-..+|.++|.+..+|..|=.+...++..+ .+-++.....++-+|+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL----------------------~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDL----------------------NKELEYLDEIIEDNPK 110 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHH----------------------HHHHHHHHHHHHhCcc
Confidence 345577889999999999999999999999999988877642 7778888888888999
Q ss_pred chHHHHHHHHHHHhhhhHH-HHHHHHhcccccCCCCchhh
Q 011861 137 SMKSHLLKANALILLERYD-MARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~l~p~~~~~~ 175 (476)
|.+.+..+-.+.-.+|++. .-+......+..|..|=-++
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAW 150 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhh
Confidence 9998888888888888887 66777777777665544443
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.65 E-value=1.4 Score=42.33 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=43.1
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (476)
+...+..|...|.+.+|+..-++++.++|-+...+..+-..+..+|+-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 345677888999999999999999999999999999999999999997
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.65 E-value=3.4 Score=43.50 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=67.6
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+++.|+..++-|-...|-..+.+++.+....+-.++..|.+|+.+.+. +.|++.++
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i-----------------------~~a~~~~~ 700 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI-----------------------SGALEAFR 700 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh-----------------------HHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHH
Q 011861 129 KLLNLQSNSMKSHLLKANA 147 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~ 147 (476)
.|++++|+++..-..+-.+
T Consensus 701 ~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhcCCCChhhHHHHHHH
Confidence 9999999998765544433
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.49 E-value=2.9 Score=41.52 Aligned_cols=103 Identities=15% Similarity=-0.036 Sum_probs=79.0
Q ss_pred HHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHH
Q 011861 67 ISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKAN 146 (476)
Q Consensus 67 i~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~ 146 (476)
...|++.++-+|.|..+|..++...-.+-.. .+.. ....+.+++..+..+++|++.+|++...+..+-.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~-------~~~~----~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~ 73 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRL-------QSSS----KAERRALAERKLSILERALKHNPDSERLLLGYLE 73 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccc-------cccc----hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4568889999999999998877665544433 0000 3345566688999999999999999998887777
Q ss_pred HHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 147 ALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 147 ~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
.....-+-+...+-+++++..+|++..++...-.
T Consensus 74 ~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 74 EGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 7777778888888899999999998888765433
No 376
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.46 E-value=1.3 Score=28.60 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
+..+...|..++..|+|++|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345778899999999999999999999876
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.24 E-value=1 Score=29.00 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH--HhcccccCCCC
Q 011861 139 KSHLLKANALILLERYDMARDA--ILSGLQVDPFS 171 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~--~~~~l~l~p~~ 171 (476)
+.++.+|..+...|+|++|++. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678889999999999999999 44666666654
No 378
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.94 E-value=4.4 Score=42.67 Aligned_cols=99 Identities=15% Similarity=-0.060 Sum_probs=81.1
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH-HHHHHHHhhc
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA-LKDAEKLLNL 133 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~al~l 133 (476)
-.+..-++...|+-....++..+|++..++.++|.+....|.. -.+ ......+...
T Consensus 75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~-----------------------~~~~~~~~~~a~~~ 131 (620)
T COG3914 75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ-----------------------FLALADISEIAEWL 131 (620)
T ss_pred hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHHhc
Confidence 3345567888888999999999999999999999999988876 444 4455559999
Q ss_pred cccchHHHHHH------HHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 134 QSNSMKSHLLK------ANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 134 ~p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
.|++......+ |..+..+|+..++..++.++..+.|.++.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 132 SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 99998876666 88888899999999999999999998865543
No 379
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.89 E-value=4.3 Score=41.48 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=61.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
.......|.-+|.+|+|.+++-.-....+++| .+.+|..+|.|.+...+| .+|...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y-----------------------~eA~~~ 517 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY-----------------------QEAWEY 517 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 56777889999999999999999999999999 899999999999999999 999776
Q ss_pred HHHHhhccccchHHHHHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALI 149 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~ 149 (476)
+.. +-.+.+-..+.-.+|.+++
T Consensus 518 l~~-LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 518 LQK-LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HHh-CCCchhhHHHHHHHHHHHH
Confidence 543 2223333345555555554
No 380
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.47 E-value=10 Score=28.90 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=22.1
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (476)
..+..+..+|-.+=+.|+|++||.+|++|++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466677777777778888888888865544
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.32 E-value=1.3 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhc
Q 011861 139 KSHLLKANALILLERYDMARDAILS 163 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (476)
.+++.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999988753
No 382
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=3 Score=39.61 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=83.5
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH-HHHHHHHHHhhccccch
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE-LALKDAEKLLNLQSNSM 138 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~al~l~p~~~ 138 (476)
+.+..+-+...++.++-+|.|..+|..|-.+...+|+. . .-++....++..|.+|.
T Consensus 91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~-----------------------s~rELef~~~~l~~DaKNY 147 (318)
T KOG0530|consen 91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP-----------------------SFRELEFTKLMLDDDAKNY 147 (318)
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc-----------------------ccchHHHHHHHHhccccch
Confidence 35677888999999999999999999999999899988 5 77888999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
-++..+-+++...+.|+.-+++....++.|-.|..+++
T Consensus 148 HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 148 HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 99999999999999999999999999988876666653
No 383
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.48 E-value=1.4 Score=40.33 Aligned_cols=48 Identities=29% Similarity=0.616 Sum_probs=37.9
Q ss_pred ccccccccccccc--CcEEccCCCcccHhhHHHhhh--------cCCCCccccccccc
Q 011861 201 DDFDCTLCLKLLY--EPITTPCGHSFCRSCLFQSMD--------RGNKCPLCRAVLFI 248 (476)
Q Consensus 201 ~~~~C~iC~~~~~--~P~~~~cgh~fC~~Cl~~~~~--------~~~~Cp~cr~~~~~ 248 (476)
..-.|..|.-.+. +.+.+.|-|.|+..|+..|-. .+..||.|.+++.+
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3457999988775 557789999999999987654 35679999998853
No 384
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=82.88 E-value=5.8 Score=37.20 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=64.4
Q ss_pred HHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHH---HHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh-
Q 011861 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR---ISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN- 132 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~- 132 (476)
.|..|+|+.|++....||+.+-.-|+-|.. ....+- .-++.+.+......+. ..-...+.....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R-~~~t~vaeev~~~A~~~~~ag~~~e-----------~~~~~~~~~l~~~ 160 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRR-TLANFVAEEVANAALKAASAGESVE-----------PYFLRVFLDLTTE 160 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccC-CchHHHHHHHHHHHHHHHHcCCCCC-----------hHHHHHHHHHHhc
Confidence 378999999999999999986444433321 111111 1112110100000000 001111222211
Q ss_pred cc-ccchHHHH--HHHHHHH---------hhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 133 LQ-SNSMKSHL--LKANALI---------LLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 133 l~-p~~~~~~~--~~~~~~~---------~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
.+ |+...+-+ ..|..+. ..++...|+..+++++++||. ..+...++++++.+..
T Consensus 161 ~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 161 WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA 226 (230)
T ss_pred CCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence 11 55555444 5555552 456788999999999999954 5567777888777764
No 385
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.69 E-value=5.2 Score=38.97 Aligned_cols=73 Identities=12% Similarity=0.005 Sum_probs=58.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccc-hhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN-RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
..-|..-++-.-+.+-|.+--..|.+++..+|+|.++|.. .+.-|...+++ ..+-.
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani-----------------------~s~Ra 163 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI-----------------------ESSRA 163 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH-----------------------HHHHH
Confidence 3344444444456678888889999999999999999988 66667778888 99999
Q ss_pred HHHHHhhccccchHHHH
Q 011861 126 DAEKLLNLQSNSMKSHL 142 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~ 142 (476)
.+.+++++||+++..|+
T Consensus 164 ~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 164 MFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHhhhccCCCCchHHH
Confidence 99999999999988443
No 386
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.38 E-value=4.7 Score=39.01 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=58.1
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (476)
.++..++..+...|++ +.++...++.+.++|-+-++|.++-.+|+..|+...|+..|
T Consensus 154 ~~l~~lae~~~~~~~~-----------------------~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 154 KALTKLAEALIACGRA-----------------------DAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHhcccH-----------------------HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 6777888888889999 99999999999999999999999999999999999999999
Q ss_pred hccccc
Q 011861 162 LSGLQV 167 (476)
Q Consensus 162 ~~~l~l 167 (476)
.+.-++
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 887664
No 387
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=3.7 Score=45.92 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCcccccccccccccCcEEcc-CCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 199 RTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~-cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
.++.+.=|+..-.+.+||.+| .|++.|+.=+.+++......|.||.++.. ..+..|..++.-+..|..+
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~--d~v~pn~eLK~kI~~~~~e 936 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTE--DMVSPNEELKAKIRCWIKE 936 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCch--hhcCCCHHHHHHHHHHHHH
Confidence 667888889999999999998 99999999999999999999999999854 5678888888888777544
No 388
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.16 E-value=11 Score=32.71 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=73.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+.+........++...+-......--+.|+.+++...-|..++..|+| .+|+..+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w-----------------------~eA~rvl 67 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY-----------------------DEAARIL 67 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH-----------------------HHHHHHH
Confidence 34555555666688899988888888888999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHH
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYD 155 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~ 155 (476)
+...+-.+..+-+--.++.|+..+|+.+
T Consensus 68 r~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 68 RELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 9999988888888888999999988875
No 389
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.15 E-value=1.6 Score=47.83 Aligned_cols=35 Identities=34% Similarity=0.783 Sum_probs=27.0
Q ss_pred Ccccccccccccc-cCcE-EccCCCcccHhhHHHhhh
Q 011861 200 TDDFDCTLCLKLL-YEPI-TTPCGHSFCRSCLFQSMD 234 (476)
Q Consensus 200 ~~~~~C~iC~~~~-~~P~-~~~cgh~fC~~Cl~~~~~ 234 (476)
.....|.+|...+ ..|. .++|||.|++.|+.++..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3455899999865 5664 569999999999987653
No 390
>PHA03096 p28-like protein; Provisional
Probab=82.00 E-value=0.72 Score=44.71 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=29.4
Q ss_pred cccccccccccCc--------EEccCCCcccHhhHHHhhhcC---CCCccccc
Q 011861 203 FDCTLCLKLLYEP--------ITTPCGHSFCRSCLFQSMDRG---NKCPLCRA 244 (476)
Q Consensus 203 ~~C~iC~~~~~~P--------~~~~cgh~fC~~Cl~~~~~~~---~~Cp~cr~ 244 (476)
-.|.+|++....- ....|.|.||..|+..|.... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999865432 233799999999999987632 23555543
No 391
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.77 E-value=2 Score=28.04 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccC
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIK 77 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~ 77 (476)
-+...|...+..++|.+|+..|.+++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999863
No 392
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=1.1 Score=44.76 Aligned_cols=47 Identities=26% Similarity=0.541 Sum_probs=36.1
Q ss_pred CCccccccccccccc--C-cEEccCCCcccHhhHHHhhhcCC---CCcccccc
Q 011861 199 RTDDFDCTLCLKLLY--E-PITTPCGHSFCRSCLFQSMDRGN---KCPLCRAV 245 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~--~-P~~~~cgh~fC~~Cl~~~~~~~~---~Cp~cr~~ 245 (476)
....|.||+-.+.-. + |+.+.|||..|+..+.+...++. +||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 345689999887543 4 46789999999999998877654 69999543
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.67 E-value=2.2 Score=33.97 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcccc---------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 121 ELALKDAEKLLNLQSN---------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
..|++.+.+.++.... ..-+...+|..+..+|++++|+..+++++++.....+
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 8888888887775422 2347788999999999999999999999987654443
No 394
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.15 E-value=5.7 Score=45.98 Aligned_cols=102 Identities=12% Similarity=-0.071 Sum_probs=70.3
Q ss_pred HHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc
Q 011861 57 AFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN 136 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~ 136 (476)
|-+-+++++|.+.|+..++..-+....|...|..+++..+- ++|-....+|++.-|.
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~-----------------------~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA-----------------------EAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH-----------------------HHHHHHHHHHHhhcch
Confidence 34456777777777777776666667777777777766665 6666677777777776
Q ss_pred --chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 137 --SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+.+...-.|+.-+..|+.+.++..|+..+.-.|.-.++|......
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 555666666666777777777777777777777767766655444
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.90 E-value=2.8 Score=33.31 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=46.4
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCC---------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGD---------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+.|||.+|++.+.+.+...... ..++.++|.++...|++ ++|+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~-----------------------~~A~~~ 63 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY-----------------------EEALQA 63 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 4568899999988888887763322 35678899999999999 999999
Q ss_pred HHHHhhccc
Q 011861 127 AEKLLNLQS 135 (476)
Q Consensus 127 ~~~al~l~p 135 (476)
++.|+++-.
T Consensus 64 l~eAi~~Ar 72 (94)
T PF12862_consen 64 LEEAIRLAR 72 (94)
T ss_pred HHHHHHHHH
Confidence 999998853
No 396
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.26 E-value=6.4 Score=39.57 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=72.0
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhH--HHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSS--AYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
....++..+-.|+|+.|.+.|.-.+..--. -.+-.|+. .-.++|.+ +.|..+.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~dPEt--RllGLRgLyleAqr~Gar-----------------------eaAr~yA 177 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLDDPET--RLLGLRGLYLEAQRLGAR-----------------------EAARHYA 177 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhcChHH--HHHhHHHHHHHHHhcccH-----------------------HHHHHHH
Confidence 456788899999999999999877653222 22333333 23467888 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
..|-+.-|.-+.+....-...+..|+|+.|++......+
T Consensus 178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999988888889999999999998876654
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.82 E-value=3.9 Score=26.25 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHhccHHHHHHH--HHHHhccCCCC
Q 011861 49 DLVQKGNRAFRESNFEEAISN--YSRANNIKPGD 80 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~--y~~al~~~p~~ 80 (476)
.+..-|-.++.+|+|++|+.. |.-+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456678889999999999999 54887777754
No 398
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=79.73 E-value=0.87 Score=48.84 Aligned_cols=46 Identities=28% Similarity=0.784 Sum_probs=38.4
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhhh--c-CCCCccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD--R-GNKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~--~-~~~Cp~cr~~~ 246 (476)
...+|++|...++.|+.+.|-|.||..|+-..+. + ...||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 3789999999999999999999999999966544 2 34599998665
No 399
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=1.9 Score=42.59 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=62.0
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
+..-++.+++..|+..-..+++.++....+|+.|++++..+.++ ++|++++..+...
T Consensus 282 ~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~-----------------------~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 282 AAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNY-----------------------DEALEDLKKAKQK 338 (372)
T ss_pred HHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhch-----------------------hhhHHHHHHhhcc
Confidence 34446677888888888888888999999999999999999999 9999999999999
Q ss_pred cccchHHHHHHHHHHHhhhh
Q 011861 134 QSNSMKSHLLKANALILLER 153 (476)
Q Consensus 134 ~p~~~~~~~~~~~~~~~~~~ 153 (476)
.|++....-.+..+-...++
T Consensus 339 ~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 339 APNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred CcchHHHHHHHHHhhhHHHH
Confidence 99987655554444433333
No 400
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.72 E-value=5.5 Score=42.01 Aligned_cols=98 Identities=17% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHhccHHH-HHHHHHHHhccCCCCcccccc--hhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 011861 58 FRESNFEE-AISNYSRANNIKPGDPIVLGN--RSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 58 ~~~~~~~~-Ai~~y~~al~~~p~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (476)
+..++.+. |+..|...+.++|.++.++.. ++..+..++.. ..+......++..|
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~-----------------------~~~~~~~~~~l~~~ 97 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADS-----------------------TLAFLAKRIPLSVN 97 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccc-----------------------hhHHHHHhhhHhcC
Confidence 44555554 888888888899999877444 36666666666 78888889999999
Q ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHhc-ccccCCCCchhhHHH
Q 011861 135 SNSMKSHLLKANALILLERYDMARDAILS-GLQVDPFSNPLQASL 178 (476)
Q Consensus 135 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~l~p~~~~~~~~~ 178 (476)
|+++.++..+|.++...|....+...+.. +....|.+.....-+
T Consensus 98 ~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 98 PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 99999999999999877777777766666 788888888766544
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.56 E-value=15 Score=37.90 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=74.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+.+..+.-...+..||...|-.....+++..|.+|..-..++.++..+|.| +.+..
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~y-----------------------e~~~~ 344 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYY-----------------------EQAYQ 344 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhH-----------------------HHHHH
Confidence 4555555666778889999999999999999999999999999999999999 77766
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+..-+-..-..-.++..-+-..+..+|++++|.....-.+...-+++
T Consensus 345 ~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 345 DISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDE 391 (831)
T ss_pred HhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCCh
Confidence 65554444333444555555556677777777766555554333333
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.42 E-value=2.7 Score=42.84 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=43.7
Q ss_pred chhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc---------cchHHHHHHHHHHHhhhhHHH
Q 011861 86 NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS---------NSMKSHLLKANALILLERYDM 156 (476)
Q Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p---------~~~~~~~~~~~~~~~~~~~~~ 156 (476)
.+..+|..+|+| ..|++..+ -++++. -+...+|..|.+|+.+++|.+
T Consensus 127 gLlRvh~LLGDY-----------------------~~Alk~l~-~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~D 182 (404)
T PF10255_consen 127 GLLRVHCLLGDY-----------------------YQALKVLE-NIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYAD 182 (404)
T ss_pred HHHHHHHhccCH-----------------------HHHHHHhh-ccCcccchhhccCcchheehHHHHHHHHHHHHHHHH
Confidence 356778889999 77777542 334432 245689999999999999999
Q ss_pred HHHHHhcccc
Q 011861 157 ARDAILSGLQ 166 (476)
Q Consensus 157 A~~~~~~~l~ 166 (476)
|+..|...+-
T Consensus 183 Air~f~~iL~ 192 (404)
T PF10255_consen 183 AIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 403
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.01 E-value=3.8 Score=30.46 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.2
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
.++..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999875
No 404
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.84 E-value=2.8 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.643 Sum_probs=21.9
Q ss_pred cccccccccCcEEc---cCCCcccHhhHHHhhhcCC--CCccc
Q 011861 205 CTLCLKLLYEPITT---PCGHSFCRSCLFQSMDRGN--KCPLC 242 (476)
Q Consensus 205 C~iC~~~~~~P~~~---~cgh~fC~~Cl~~~~~~~~--~Cp~c 242 (476)
|.+|.++...-+.= .|+-.++..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777777666542 5998999999999888544 69987
No 405
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.60 E-value=5.6 Score=38.47 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=56.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...+..+...|+++.++...++.+..+|.+-.+|..+-.+|.+.|+. ..|+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~-----------------------~~ai~~ 209 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ-----------------------SAAIRA 209 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc-----------------------hHHHHH
Confidence 345566788889999999999999999999999999999999999999999 888888
Q ss_pred HHHHhh
Q 011861 127 AEKLLN 132 (476)
Q Consensus 127 ~~~al~ 132 (476)
|++.-.
T Consensus 210 y~~l~~ 215 (280)
T COG3629 210 YRQLKK 215 (280)
T ss_pred HHHHHH
Confidence 877654
No 406
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.39 E-value=30 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=24.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
..+..+..+|...=+.|+|++|+.+|.+||+.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677778888888888888888888666543
No 407
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.87 E-value=3.8 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=29.1
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
.+.+..+..+|-.+=+.|+|++|+.+|.+|++.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999876
No 408
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=76.67 E-value=9.4 Score=38.59 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHHHhcc----CCCCcccccchhHHHHH---HHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh-h
Q 011861 61 SNFEEAISNYSRANNI----KPGDPIVLGNRSSAYIR---ISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL-N 132 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al-~ 132 (476)
.+|+.-|......-.+ -++.+.+.+..|.|+.+ .|+. ++|+..+..++ .
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr-----------------------e~Al~il~~~l~~ 211 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR-----------------------EKALQILLPVLES 211 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH-----------------------HHHHHHHHHHHhc
Confidence 5566555555554444 34456777788999988 8888 99999999854 4
Q ss_pred ccccchHHHHHHHHHHHh---------hhhHHHHHHHHhcccccCCC
Q 011861 133 LQSNSMKSHLLKANALIL---------LERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~l~l~p~ 170 (476)
-.+.++..+-..|.+|-. ....+.|+..|.++++++|+
T Consensus 212 ~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 556788888888988843 34678999999999999864
No 409
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.06 E-value=11 Score=38.14 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+.+-|.-|+.-|+++.|+++|.++-.++.+.. ..+.|.-.+-..+|+| ..-..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw-----------------------~hv~s 208 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNW-----------------------GHVLS 208 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcch-----------------------hhhhh
Confidence 455567778889999999999999877776542 4555666666678888 55555
Q ss_pred HHHHHhhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 126 DAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 126 ~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
...+|.+.- .-.++..-..|.+.+.+++|..|...|..+
T Consensus 209 y~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 209 YISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555554441 113446677888889999999999988765
No 410
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.94 E-value=2.9 Score=28.20 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 141 HLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
.+.+|.+|+.+|+++.|+..++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999984
No 411
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.75 E-value=4.8 Score=38.62 Aligned_cols=59 Identities=17% Similarity=-0.069 Sum_probs=45.2
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|...|.+|+.+.|++...|+.+|.+....|+.-+|+=+|.+++...--.+.+..++..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999986543334444444433
No 412
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=1.3 Score=42.57 Aligned_cols=41 Identities=32% Similarity=0.677 Sum_probs=28.3
Q ss_pred cccccccccc-CcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 204 DCTLCLKLLY-EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 204 ~C~iC~~~~~-~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
.|.-|.-.+. --..++|.|.||..|... ...+.||.|...+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 5666764332 224579999999999753 3356799998665
No 413
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.21 E-value=22 Score=35.17 Aligned_cols=117 Identities=21% Similarity=0.134 Sum_probs=83.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC----CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.+..+..-+...-+.|.++.|.....++....+. .+.+....|......|+. .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~-----------------------~ 201 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ-----------------------E 201 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH-----------------------H
Confidence 3456777788888999999999999999987632 456666667777777777 7
Q ss_pred HHHHHHHHHhhc--c--------------------------------ccchHHHHHHHHHHHhh------hhHHHHHHHH
Q 011861 122 LALKDAEKLLNL--Q--------------------------------SNSMKSHLLKANALILL------ERYDMARDAI 161 (476)
Q Consensus 122 ~a~~~~~~al~l--~--------------------------------p~~~~~~~~~~~~~~~~------~~~~~A~~~~ 161 (476)
+|+...+..+.. . ....++++.+|.-.... +.+++++..|
T Consensus 202 ~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~ 281 (352)
T PF02259_consen 202 EAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYY 281 (352)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 777666665551 0 11234666777766666 8888899999
Q ss_pred hcccccCCCCchhhHHHHHHHHhh
Q 011861 162 LSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 162 ~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
..+.+++|.+.............+
T Consensus 282 ~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 282 KEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHH
Confidence 999999998887666555554433
No 414
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.84 E-value=2.3 Score=39.52 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.6
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhh
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSM 233 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~ 233 (476)
+-..|++|+....+|+..+-||.||+.||.+.+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 334679999999999999999999999997654
No 415
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.35 E-value=8.2 Score=38.35 Aligned_cols=84 Identities=18% Similarity=-0.023 Sum_probs=59.2
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
..-.+..+..|.+|++.+|++..++..+-.+..+...- ++..+..++++..+|+++.
T Consensus 44 ~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-----------------------~~l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 44 RALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-----------------------EKLAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHHHHHHHCCCChH
Confidence 34467889999999999999988887766666666555 7778889999999999877
Q ss_pred HHHH-HHHHHH--hhhhHHHHHHHHhcccc
Q 011861 140 SHLL-KANALI--LLERYDMARDAILSGLQ 166 (476)
Q Consensus 140 ~~~~-~~~~~~--~~~~~~~A~~~~~~~l~ 166 (476)
.|.. +-.... ..-.++..+..|.++++
T Consensus 101 LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 101 LWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 5543 222222 22245566666666654
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.78 E-value=17 Score=37.88 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=52.4
Q ss_pred HHHh-ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 57 AFRE-SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 57 ~~~~-~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
|.++ +.|.+--..|.+++..+|+++++|..-|.=.+..+..+ +.|-..+.++++.+|
T Consensus 114 f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni----------------------~saRalflrgLR~np 171 (568)
T KOG2396|consen 114 FCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNI----------------------ESARALFLRGLRFNP 171 (568)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccch----------------------HHHHHHHHHHhhcCC
Confidence 3344 44888889999999999999999999888888777631 888889999999999
Q ss_pred cchHHH
Q 011861 136 NSMKSH 141 (476)
Q Consensus 136 ~~~~~~ 141 (476)
++++.|
T Consensus 172 dsp~Lw 177 (568)
T KOG2396|consen 172 DSPKLW 177 (568)
T ss_pred CChHHH
Confidence 998743
No 417
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=8.1 Score=39.39 Aligned_cols=34 Identities=26% Similarity=0.731 Sum_probs=25.3
Q ss_pred ccccccccc-ccccCcE---EccCCCcccHhhHHHhhh
Q 011861 201 DDFDCTLCL-KLLYEPI---TTPCGHSFCRSCLFQSMD 234 (476)
Q Consensus 201 ~~~~C~iC~-~~~~~P~---~~~cgh~fC~~Cl~~~~~ 234 (476)
...+|.+|. +.....- ...|+|-||..|..++..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 466899999 4433322 347999999999998776
No 418
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=73.21 E-value=3.1 Score=36.20 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=33.7
Q ss_pred cccccccccccccCcEEccCCCc-----ccHhhHHHhhhcC--CCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHS-----FCRSCLFQSMDRG--NKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~-----fC~~Cl~~~~~~~--~~Cp~cr~~~~ 247 (476)
....|-||.+... +...||... -+..|+.+|...+ ..|+.|+.+..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4568999987754 344577653 3899999999843 45999998763
No 419
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.80 E-value=5 Score=30.56 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=29.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIK 77 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~ 77 (476)
.++..++.+|...=..|+|++|+..|..|+++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 467888899988889999999999999999874
No 420
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.75 E-value=4.9 Score=38.82 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=44.7
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (476)
.++...+..|...|.+ .+|+..+++++.++|-+...+..+-.+|..+|+--.|...|
T Consensus 280 kllgkva~~yle~g~~-----------------------neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 280 KLLGKVARAYLEAGKP-----------------------NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHHHHHcCCh-----------------------HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 4445566777777777 88888888888888888888888888888888776666666
Q ss_pred hcc
Q 011861 162 LSG 164 (476)
Q Consensus 162 ~~~ 164 (476)
++.
T Consensus 337 ery 339 (361)
T COG3947 337 ERY 339 (361)
T ss_pred HHH
Confidence 543
No 421
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.67 E-value=11 Score=28.89 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhccccchHHHH---HHHHHHHhhhhHHHHHHHHhcccc
Q 011861 121 ELALKDAEKLLNLQSNSMKSHL---LKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
++|+....++++..++...-+. .+..+|+..|+|.+++++..+-++
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888766444 455778999999999987655443
No 422
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.01 E-value=48 Score=32.07 Aligned_cols=105 Identities=19% Similarity=0.178 Sum_probs=70.5
Q ss_pred hhhHHHHHHhhHHHHHhc-cHHHHHHHHHHHhccC----CC---Cc-------ccccchhHHHHHHHhhhccCCCCCccc
Q 011861 44 YTHVFDLVQKGNRAFRES-NFEEAISNYSRANNIK----PG---DP-------IVLGNRSSAYIRISQFLKHRPPSASEY 108 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~al~~~----p~---~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (476)
..-+.-+++-|...+.++ +|+.|+..+++|+++- .. .+ .++..+|.+|+..+.+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~----------- 100 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTY----------- 100 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCCh-----------
Confidence 445678889999999999 9999999999999882 21 22 4445555555554443
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 109 RPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 109 ~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
+...+|....+.+-.--|+.+..++..=.++...++.+++.+.+.+.+..-
T Consensus 101 ---------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 101 ---------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred ---------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 222445554444444457777777666666666777888888777776543
No 423
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=71.71 E-value=16 Score=36.86 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=66.5
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
-.+..+|+.|+..++-..+..+.+..|.= .++..|.....- +-+..-++-..+..
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP-----~ia~lY~~ar~g--------------------dta~dRlkRa~~L~ 322 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHP-----DIALLYVRARSG--------------------DTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCCh-----HHHHHHHHhcCC--------------------CcHHHHHHHHHHHH
Confidence 34555666666666666666666666532 233444443322 11123344455666
Q ss_pred hccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 132 NLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 132 ~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
.+.|||..+.+..+.+-+..|+|..|....+.+....|.....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~ 365 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAY 365 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHH
Confidence 7889999999999999999999999999999999998876543
No 424
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=71.01 E-value=8 Score=37.05 Aligned_cols=62 Identities=10% Similarity=-0.117 Sum_probs=50.4
Q ss_pred HHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHH
Q 011861 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKA 145 (476)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~ 145 (476)
|..+|.+|+.+.|++...|.++|..+...|+. -.|+-.|-+++-..--++.|.-++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~-----------------------l~avy~y~Rsl~~~~Pf~~A~~NL~ 57 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD-----------------------LDAVYYYIRSLAVRIPFPSARENLQ 57 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H-----------------------HHHHHHHHHHHSSSB--HHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch-----------------------HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999999999999999999 8999999999876644566777777
Q ss_pred HHHHh
Q 011861 146 NALIL 150 (476)
Q Consensus 146 ~~~~~ 150 (476)
..+..
T Consensus 58 ~lf~~ 62 (278)
T PF10373_consen 58 KLFEK 62 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 425
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.75 E-value=16 Score=32.26 Aligned_cols=56 Identities=16% Similarity=-0.031 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
..+...+...--+.|+++..-..-|+.++..|+|.+|+..|+...+-.|..+-.+.
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHH
Confidence 66666666666688999999999999999999999999999998777766665444
No 426
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.94 E-value=6.9 Score=42.60 Aligned_cols=41 Identities=22% Similarity=0.588 Sum_probs=27.7
Q ss_pred cccccccccccc-------CcEEccCCCcccHhhHHHhhhcCCCCcccc
Q 011861 202 DFDCTLCLKLLY-------EPITTPCGHSFCRSCLFQSMDRGNKCPLCR 243 (476)
Q Consensus 202 ~~~C~iC~~~~~-------~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr 243 (476)
+..|..|.+... .-+.+.|||.|+..|+....-+.. |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 348999987654 224579999999999965443322 55554
No 427
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=69.02 E-value=13 Score=30.98 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcccc------------chHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 121 ELALKDAEKLLNLQSN------------SMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
.+|...|++|.+..-. +.-.|-.++.++..+|+|++++....++|.
T Consensus 26 ~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 26 EEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 8999999999987632 234778899999999999998887777765
No 428
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.04 E-value=3.7 Score=28.52 Aligned_cols=41 Identities=27% Similarity=0.660 Sum_probs=20.8
Q ss_pred cccccccccccCcEE-ccCCCcccHhhHHHhhh-----cCCCCccccc
Q 011861 203 FDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMD-----RGNKCPLCRA 244 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~-~~cgh~fC~~Cl~~~~~-----~~~~Cp~cr~ 244 (476)
+.|++....+..|+. ..|.|.-|-+ +..++. ..-.||.|++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 579999999999986 5999986533 223332 2235999976
No 429
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=67.83 E-value=2.8 Score=35.55 Aligned_cols=43 Identities=21% Similarity=0.511 Sum_probs=31.8
Q ss_pred ccccccccccccC--cE-EccCC------CcccHhhHHHhhhcCCCCccccc
Q 011861 202 DFDCTLCLKLLYE--PI-TTPCG------HSFCRSCLFQSMDRGNKCPLCRA 244 (476)
Q Consensus 202 ~~~C~iC~~~~~~--P~-~~~cg------h~fC~~Cl~~~~~~~~~Cp~cr~ 244 (476)
..+|.||++.+.+ -+ .++|| |-||..|+.+|.......|-=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence 5689999998877 43 35666 56899999999665555665554
No 430
>PHA02862 5L protein; Provisional
Probab=67.39 E-value=4.4 Score=34.65 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=32.4
Q ss_pred cccccccccccCcEEccCCC-----cccHhhHHHhhhc--CCCCcccccccc
Q 011861 203 FDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDR--GNKCPLCRAVLF 247 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~~cgh-----~fC~~Cl~~~~~~--~~~Cp~cr~~~~ 247 (476)
..|-||.+.-.+. ..||.. --+..|+.+|+.. ...|+.|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3688999876544 467765 2489999999974 345999998764
No 431
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.14 E-value=9.5 Score=28.88 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
....+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888888888899999999999999775
No 432
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.02 E-value=35 Score=31.83 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=54.7
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (476)
..+++.+..++||....+-++-+|.+......+=+.|.-.|+| .+|+..++-+-+++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw-----------------------~kAl~Ql~l~a~l~ 65 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW-----------------------EKALAQLNLAATLS 65 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH-----------------------HHHHHHHHHHhhcC
Confidence 4577888899999999999999999998888888888899999 99999999999999
Q ss_pred ccchH
Q 011861 135 SNSMK 139 (476)
Q Consensus 135 p~~~~ 139 (476)
|++..
T Consensus 66 p~~t~ 70 (273)
T COG4455 66 PQDTV 70 (273)
T ss_pred cccch
Confidence 98755
No 433
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=66.92 E-value=2.3 Score=39.34 Aligned_cols=46 Identities=35% Similarity=0.870 Sum_probs=34.2
Q ss_pred cccccccccc-cccCcE----Ecc-CCCcccHhhHHHhhhcCC-CCc--cccccc
Q 011861 201 DDFDCTLCLK-LLYEPI----TTP-CGHSFCRSCLFQSMDRGN-KCP--LCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~-~~~~P~----~~~-cgh~fC~~Cl~~~~~~~~-~Cp--~cr~~~ 246 (476)
.+..||+|.. .+-+|- ..| |-|..|-+|..+-+..++ .|| -|.+.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3568999985 355662 124 999999999999888665 599 687654
No 434
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=66.85 E-value=31 Score=34.12 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=67.9
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc--cccc
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--QSNS 137 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~ 137 (476)
.-||..-...|+-...+.| ++.+-.|||.+..+..=. ..++...+...+- -..+
T Consensus 309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp-----------------------~agLa~ve~L~~~~~L~gy 364 (415)
T COG4941 309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGP-----------------------AAGLAMVEALLARPRLDGY 364 (415)
T ss_pred CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhH-----------------------HhHHHHHHHhhcccccccc
Confidence 3456665666666666665 678888999998776665 6666665544433 2345
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 138 MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
.-.|-.+|..+..+|+-++|...|.+++.+.++..+.....
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 55677889999999999999999999999987766544333
No 435
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=66.39 E-value=4.7 Score=27.60 Aligned_cols=38 Identities=37% Similarity=0.847 Sum_probs=22.6
Q ss_pred ccccccccc--CcEEccCCC-----cccHhhHHHhhh--cCCCCccc
Q 011861 205 CTLCLKLLY--EPITTPCGH-----SFCRSCLFQSMD--RGNKCPLC 242 (476)
Q Consensus 205 C~iC~~~~~--~P~~~~cgh-----~fC~~Cl~~~~~--~~~~Cp~c 242 (476)
|-||++.-. .|...||+. ..+..||.+|+. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 567776543 256778764 348999999998 34558876
No 436
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=66.01 E-value=37 Score=32.46 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=82.4
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (476)
..++...+.-.|+..|.+.+.-.|.+.-++...|.|..++-.-...- -++|.+ ..|++.+++|+=+.
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~---~s~~~~----------~n~~e~~d~ALm~A 69 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDW---HSDATM----------ENAKELLDKALMTA 69 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhh---hcccCh----------hhHHHHHHHHHHhh
Confidence 45666777888999999999999999988888888876654310000 123333 78888888888664
Q ss_pred cc------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 135 SN------SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 135 p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
.. -.-.-++.+..|+..++|+.|..+|..|+.+- -+..+-...-+++..+..
T Consensus 70 e~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~-~~d~L~~We~rLet~L~~ 127 (368)
T COG5091 70 EGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLY-VDDTLPLWEDRLETKLNK 127 (368)
T ss_pred hccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHhH
Confidence 32 12255788899999999999999999998873 333344444455544443
No 437
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=64.80 E-value=11 Score=36.43 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHhccHHHHHHHHHHHhccC-CCCcccccchhHHHHHHHhhhccCC-CCCcccCCCCCCCCcchHHHHHHHHHHHhhcc
Q 011861 57 AFRESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYIRISQFLKHRP-PSASEYRPLNGLDPTTHAELALKDAEKLLNLQ 134 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 134 (476)
..++||++.|...|+++-.+. .-++.....++..+++.|.-.-.+. +...++.|+ ++|.+.+++.-+.+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL---------~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWL---------QRAYDILEKPGKMD 73 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH---------HHHHHHHHhhhhcc
Confidence 467899999999999998776 6677777777777777776422221 111222222 55555444422222
Q ss_pred cc-------chHHHHHHHHHHHhhhhHH---HHHHHHhcccccCCCCchhh
Q 011861 135 SN-------SMKSHLLKANALILLERYD---MARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 135 p~-------~~~~~~~~~~~~~~~~~~~---~A~~~~~~~l~l~p~~~~~~ 175 (476)
.. ....+..++.+|...+.++ .|...+..+-.-.|+.+.+.
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 22 2336777888888766655 34444444433445555544
No 438
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.77 E-value=3.6 Score=39.20 Aligned_cols=27 Identities=41% Similarity=0.928 Sum_probs=20.4
Q ss_pred CCCcccHhhHHHhhh-------------cCCCCccccccc
Q 011861 220 CGHSFCRSCLFQSMD-------------RGNKCPLCRAVL 246 (476)
Q Consensus 220 cgh~fC~~Cl~~~~~-------------~~~~Cp~cr~~~ 246 (476)
|..-+|..|+-+|+. ++..||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 445678999998874 234699999976
No 439
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.62 E-value=37 Score=35.34 Aligned_cols=98 Identities=19% Similarity=0.110 Sum_probs=75.5
Q ss_pred hhHHHHHHhhHHHHH-hccHHHHHHHHHHHhccC---CCC----cccccchhHHHHHHH-hhhccCCCCCcccCCCCCCC
Q 011861 45 THVFDLVQKGNRAFR-ESNFEEAISNYSRANNIK---PGD----PIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~-~~~~~~Ai~~y~~al~~~---p~~----~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 115 (476)
-+++-..+.|..+|. ..+++.|..+..+|+.+. |+. ..+++.+|.+|.... .+
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~------------------ 105 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF------------------ 105 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC------------------
Confidence 446666777777654 589999999999998874 333 256677888888877 55
Q ss_pred CcchHHHHHHHHHHHhhccccc----hHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 116 PTTHAELALKDAEKLLNLQSNS----MKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
..+....++|+++..++ .+..+.+++.+.--++|+.|.+.+.-+.
T Consensus 106 -----~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga 154 (629)
T KOG2300|consen 106 -----PPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGA 154 (629)
T ss_pred -----chHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence 78888899999987654 3577889999999999999999865544
No 440
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.30 E-value=11 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=28.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
.++..+..+|...=..|+|++|+.+|..|++.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778889999899999999999999999876
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.25 E-value=5.8 Score=23.71 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHhccCCCCcccccchhH
Q 011861 61 SNFEEAISNYSRANNIKPGDPIVLGNRSS 89 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~ 89 (476)
|++++|...|.+++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 57889999999999999988888776543
No 442
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.70 E-value=18 Score=36.98 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=71.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHh-----------ccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRAN-----------NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al-----------~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
+-.+-++|..+++...|..|+.++-+|= +.-.|.+.+-.....||+++.+. ..=+|++++.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkni---tcL~DAe~RL----- 234 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNI---TCLPDAEVRL----- 234 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccc---ccCChHHHHH-----
Confidence 4567789999999999999999887763 33445666777788999999886 2234444443
Q ss_pred CcchHHHHHHHHHHHh--------hcc-cc------chHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 116 PTTHAELALKDAEKLL--------NLQ-SN------SMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al--------~l~-p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
..|-+.|.++- .+. +. ....++.-|.+.+..|.-++|...++.+.
T Consensus 235 -----~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 235 -----VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred -----HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44444333332 222 12 22356667888888888888888887764
No 443
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.68 E-value=12 Score=34.27 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=41.5
Q ss_pred CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc----chHHHHHHHHHHHhhhhH
Q 011861 79 GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN----SMKSHLLKANALILLERY 154 (476)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~----~~~~~~~~~~~~~~~~~~ 154 (476)
+++++.+.+|..|.+ .+. ++++..+.+++++.+. ++..+..++.+++..|++
T Consensus 139 ~t~elq~aLAtyY~k-rD~-----------------------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 139 ETAELQYALATYYTK-RDP-----------------------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred CCHHHHHHHHHHHHc-cCH-----------------------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 456777777777764 344 7888888888887643 577888888888888888
Q ss_pred HHHH
Q 011861 155 DMAR 158 (476)
Q Consensus 155 ~~A~ 158 (476)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 444
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=62.42 E-value=1.2e+02 Score=32.83 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=79.6
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------------------cccccchhHHHHHHHhhhccCCCCCcccC
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------------------PIVLGNRSSAYIRISQFLKHRPPSASEYR 109 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (476)
.-+-+-|..-++..+++.|++....|...-.+. ..+|+..+..-...|-+
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf------------ 493 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF------------ 493 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH------------
Confidence 344556777789999999999999987763221 25666666666667777
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 110 PLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 110 ~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
+.....|++.+++.=--++...+.|.-+-....|++|.+.|++++.+.+-
T Consensus 494 -----------estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 494 -----------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred -----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 88888999999998778888888999999999999999999999998754
No 445
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.38 E-value=12 Score=37.27 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=47.7
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC--------CcccccchhHHHHHHHhh
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--------DPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--------~~~~~~~~a~~~~~~~~~ 97 (476)
...+.+..++..|+..+..++|++|...|.+|..+... ...+++..|.+++.++++
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~ 99 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKE 99 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999988432 347778888888888887
No 446
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=62.34 E-value=14 Score=38.55 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=53.1
Q ss_pred HhhHHHHHh---ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 52 QKGNRAFRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 52 ~~g~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.++..++++ |+.-.|+.....|++++|...++|+.++.++..++++ .+|+....
T Consensus 413 nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~-----------------------~eal~~~~ 469 (758)
T KOG1310|consen 413 NRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRY-----------------------LEALSCHW 469 (758)
T ss_pred hHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH-----------------------HHhhhhHH
Confidence 345555554 6778899999999999999999999999999999999 99999887
Q ss_pred HHhhccccc
Q 011861 129 KLLNLQSNS 137 (476)
Q Consensus 129 ~al~l~p~~ 137 (476)
.+....|.+
T Consensus 470 alq~~~Ptd 478 (758)
T KOG1310|consen 470 ALQMSFPTD 478 (758)
T ss_pred HHhhcCchh
Confidence 777777743
No 447
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=62.34 E-value=65 Score=24.25 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=23.8
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
..+..+..+|...=..|+|++|+.+|.+|++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777787777888888888888766554
No 448
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.25 E-value=18 Score=27.54 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|...|...+.+|+++|... ...-..-.|.+|++.+.+++...|+++.......++
T Consensus 2 L~~~A~~~a~~AVe~D~~g--------r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 2 LEEMARKYAINAVKAEKEG--------NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 4578888888998887532 222233456777888888888888877654444333
No 449
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.12 E-value=36 Score=36.59 Aligned_cols=97 Identities=16% Similarity=0.025 Sum_probs=69.5
Q ss_pred HHHHhhHHHHH-----hccHHHHHHHHHHHhc-------cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCC
Q 011861 49 DLVQKGNRAFR-----ESNFEEAISNYSRANN-------IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 49 ~~~~~g~~~~~-----~~~~~~Ai~~y~~al~-------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
+....|..++. ..|.++|+.+|..|.+ .- ++.+.+.+|.+|.+-.-. ..
T Consensus 246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~-----------------~~ 306 (552)
T KOG1550|consen 246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGV-----------------EK 306 (552)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCC-----------------cc
Confidence 33344555543 3799999999999987 33 667888999999874311 00
Q ss_pred cchHHHHHHHHHHHhhccccchHHHHHHHHHHHhh---hhHHHHHHHHhccccc
Q 011861 117 TTHAELALKDAEKLLNLQSNSMKSHLLKANALILL---ERYDMARDAILSGLQV 167 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~l 167 (476)
. ....|+..+.+|-++. ++.+.+++|.++... .++..|..+|..|...
T Consensus 307 ~-d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 307 I-DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred c-cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 0 1278889998887775 677889999998743 4678999999888653
No 450
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.02 E-value=90 Score=28.13 Aligned_cols=95 Identities=5% Similarity=-0.027 Sum_probs=60.2
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCccccc-----chhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLG-----NRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.+.+..|.....+|+-+.|+..|+++-.-.| -|.+.. .-|..++..|.| +.
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy-----------------------~d 150 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSY-----------------------DD 150 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccH-----------------------HH
Confidence 4456677888899999999999998655443 333332 223334445555 33
Q ss_pred HHHHHH-HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 123 ALKDAE-KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 123 a~~~~~-~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
-..-.+ -+-+-+|--..+.-.+|.+-+..|+|..|.+.|.....
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 222111 12223344445666788888999999999999998876
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.01 E-value=25 Score=32.77 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
++++.+.+.-++-+|.+......+=+.|+-.|+|+.|...++-+-++.|++..-.
T Consensus 18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence 9999999999999999999988888999999999999999999999999876543
No 452
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.84 E-value=6 Score=33.20 Aligned_cols=41 Identities=29% Similarity=0.690 Sum_probs=27.9
Q ss_pred CCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccccc
Q 011861 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 248 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~ 248 (476)
-..++.+|.||...-.. -.||| -|.+|-. ..|..|...+.+
T Consensus 61 Gv~ddatC~IC~KTKFA---DG~GH-~C~YCq~------r~CARCGGrv~l 101 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFA---DGCGH-NCSYCQT------RFCARCGGRVSL 101 (169)
T ss_pred ccCcCcchhhhhhcccc---cccCc-ccchhhh------hHHHhcCCeeee
Confidence 35678899999965332 27999 5777743 357778766543
No 453
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=61.17 E-value=13 Score=27.94 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=26.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
..+..+..+|...=..|+|++|+.+|..|++.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677778888888889999999999999775
No 454
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.63 E-value=22 Score=33.01 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=48.1
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCC------CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
.++....+.-+.+|+..|.+|++.... ...+.+..|..+.++|++ ++|++.
T Consensus 131 ~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~-----------------------~eA~~~ 187 (214)
T PF09986_consen 131 LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY-----------------------DEAKRW 187 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 344445555678899999999877533 247888899999999999 999999
Q ss_pred HHHHhhccccc
Q 011861 127 AEKLLNLQSNS 137 (476)
Q Consensus 127 ~~~al~l~p~~ 137 (476)
+.+++.....+
T Consensus 188 fs~vi~~~~~s 198 (214)
T PF09986_consen 188 FSRVIGSKKAS 198 (214)
T ss_pred HHHHHcCCCCC
Confidence 99999875444
No 455
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.58 E-value=91 Score=28.56 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=45.8
Q ss_pred cchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc---hHHHHHHHHHHHhhhhHHHHHHHH
Q 011861 85 GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAI 161 (476)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~ 161 (476)
..+|..++..+++ ++|+..++.++....+. .-+-+|+|.++...|++++|+..+
T Consensus 93 L~lAk~~ve~~~~-----------------------d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 93 LELAKAEVEANNL-----------------------DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred HHHHHHHHhhccH-----------------------HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3467777888888 99999999998765442 236679999999999999999988
Q ss_pred hcc
Q 011861 162 LSG 164 (476)
Q Consensus 162 ~~~ 164 (476)
...
T Consensus 150 ~t~ 152 (207)
T COG2976 150 DTI 152 (207)
T ss_pred hcc
Confidence 764
No 456
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.45 E-value=26 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
..|...+..++..+|++..+...++.+|...|+++.|...+...
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 99999999999999999999999999999999999998877654
No 457
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.97 E-value=26 Score=35.43 Aligned_cols=77 Identities=16% Similarity=-0.046 Sum_probs=60.3
Q ss_pred hccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc--------------cc----
Q 011861 74 NNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--------------QS---- 135 (476)
Q Consensus 74 l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------------~p---- 135 (476)
++.+|...+.+..+|.++...|+. ..|.+..++|+=. ++
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~-----------------------~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDH-----------------------AQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 577899999999999999999999 5555555554311 11
Q ss_pred --------c---chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC-Cch
Q 011861 136 --------N---SMKSHLLKANALILLERYDMARDAILSGLQVDPF-SNP 173 (476)
Q Consensus 136 --------~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~-~~~ 173 (476)
. ...+.++....+...|-+.-|.+..+-.+.+||. |+-
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 1 2347888888999999999999999999999999 554
No 458
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.86 E-value=14 Score=34.67 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred cccccccccccccCcEE----ccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPIT----TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~----~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..|.|++..-.|..-.. .+|||.|-...+.+.. .+.|++|.....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc
Confidence 47899998877766643 4999999988887643 567999998764
No 459
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=59.74 E-value=4.8 Score=29.40 Aligned_cols=12 Identities=42% Similarity=0.968 Sum_probs=8.9
Q ss_pred cccHhhHHHhhh
Q 011861 223 SFCRSCLFQSMD 234 (476)
Q Consensus 223 ~fC~~Cl~~~~~ 234 (476)
-||+.||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 460
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=59.23 E-value=14 Score=28.03 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=27.7
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
..++..+..+|...=..|+|++|..+|..+++.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345777888888888889999999999999875
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.07 E-value=19 Score=31.13 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=37.9
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDM 156 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 156 (476)
+....+|...+..|++ .-|+...+.++..+|++..+...++.+|..+|.-.+
T Consensus 71 d~vl~~A~~~~~~gd~-----------------------~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDY-----------------------QWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-H-----------------------HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCH-----------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3444556666777888 889999999999999999999999999888776544
No 462
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=58.95 E-value=16 Score=29.85 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=40.9
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS 95 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~ 95 (476)
...+++.....+|-..+..|||.+|.+...++-+..+.....|..-|.+-..+|
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 455678888999999999999999999999998876555555554455544443
No 463
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=5.7 Score=35.03 Aligned_cols=46 Identities=22% Similarity=0.588 Sum_probs=31.8
Q ss_pred ccccccccccccCc-----E--EccCCCcccHhhHHHhhhc------C-----CCCcccccccc
Q 011861 202 DFDCTLCLKLLYEP-----I--TTPCGHSFCRSCLFQSMDR------G-----NKCPLCRAVLF 247 (476)
Q Consensus 202 ~~~C~iC~~~~~~P-----~--~~~cgh~fC~~Cl~~~~~~------~-----~~Cp~cr~~~~ 247 (476)
...|.||...--+- + ..+||..|+.-|+..|++. + -.||.|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34677776543222 1 2479999999999999872 1 13999988764
No 464
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=57.53 E-value=5.9 Score=38.08 Aligned_cols=44 Identities=27% Similarity=0.855 Sum_probs=34.5
Q ss_pred ccccccccccccc----CcEEccCCCcccHhhHHHhhhcCCCCccccc
Q 011861 201 DDFDCTLCLKLLY----EPITTPCGHSFCRSCLFQSMDRGNKCPLCRA 244 (476)
Q Consensus 201 ~~~~C~iC~~~~~----~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~ 244 (476)
....|++|.+.+. .|..++|||.....|+....-.+..||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3445999997643 4456799999999999877766688999976
No 465
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=57.32 E-value=9.6 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=21.3
Q ss_pred cCCCcccHhhHHHhhhcCCCCccccccccc
Q 011861 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 248 (476)
Q Consensus 219 ~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~ 248 (476)
+=-.+||..|....+ ...||-|+..+..
T Consensus 26 SfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 26 SFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred eEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 334689999998766 3469999988754
No 466
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=55.48 E-value=12 Score=28.37 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=19.0
Q ss_pred cccccccccccc-----CcEEc--cCCCcccHhhHHHhhh-cCCCCccccccc
Q 011861 202 DFDCTLCLKLLY-----EPITT--PCGHSFCRSCLFQSMD-RGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~-----~P~~~--~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~ 246 (476)
--.|.||.+.+- ++... .|+.-.|+.|.+--.. ....||.|+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 347889987543 33333 7888899999975444 445699999765
No 467
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.43 E-value=5.3 Score=36.91 Aligned_cols=38 Identities=29% Similarity=0.670 Sum_probs=29.5
Q ss_pred cccccccccCcEEccCCC-cccHhhHHHhhhcCCCCccccccc
Q 011861 205 CTLCLKLLYEPITTPCGH-SFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 205 C~iC~~~~~~P~~~~cgh-~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
|..|.+.-..-+.+||-| .+|..|=.. ...||.|+...
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChh
Confidence 999998877767789998 589999532 34599998753
No 468
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=55.22 E-value=41 Score=33.84 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=18.3
Q ss_pred CcccHhhHHHhhh-------------cCCCCccccccc
Q 011861 222 HSFCRSCLFQSMD-------------RGNKCPLCRAVL 246 (476)
Q Consensus 222 h~fC~~Cl~~~~~-------------~~~~Cp~cr~~~ 246 (476)
.-+|..|+-+|+. +...||+||+.+
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3458899988875 123599999876
No 469
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=55.15 E-value=72 Score=34.78 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=57.9
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
+....-.++..-|..+.....|++|.++|.+. .-..+.+.|++++.+|
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~~e~~~ecly~le~f------------------------ 838 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--------GDTENQIECLYRLELF------------------------ 838 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHhHHHHHHHHHhh------------------------
Confidence 34444566677777778888888888888763 2334567777777777
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
..++.....-|++.+.+=-+|..+...|--++|.+.|.+.
T Consensus 839 ---~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 839 ---GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred ---hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 3334444445777676667777777777777777665543
No 470
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.64 E-value=27 Score=42.94 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=65.9
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccC-CCCc---------ccccchhHHHHHHHhhhccCCCCCcccCCCCCC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIK-PGDP---------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGL 114 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~-p~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (476)
+......++|..+..+|+-.+|+...++.++.+ |+.. .-..-.+.+.++.+.|++...|..+
T Consensus 1700 r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s-------- 1771 (2382)
T KOG0890|consen 1700 RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES-------- 1771 (2382)
T ss_pred ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH--------
Confidence 345667788999999999999999999999653 4321 2222234677788888655544221
Q ss_pred CCcchHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 011861 115 DPTTHAELALKDAEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~ 148 (476)
..-++.|..|.++.|.+.+.||.+|.-|
T Consensus 1772 ------~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1772 ------KDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred ------HHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 5667899999999999999999998443
No 471
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=41 Score=34.18 Aligned_cols=103 Identities=10% Similarity=0.007 Sum_probs=78.0
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHh--hhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ--FLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
...+..-.++-+..-..+++.+|+...+|..|..+..+.+. | ..-++.++++++.
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~-----------------------~~EL~lcek~L~~ 140 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDW-----------------------NTELQLCEKALKQ 140 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchH-----------------------HHHHHHHHHHHhc
Confidence 34445567788888899999999999999999999876543 4 8889999999999
Q ss_pred cccchHHHHHHHHHHHhhh-h---HHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 134 QSNSMKSHLLKANALILLE-R---YDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 134 ~p~~~~~~~~~~~~~~~~~-~---~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
||.|..+|.++-.+.-... . ..+-+++-.+++..|+.|=.++.....+
T Consensus 141 D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 141 DPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred CcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 9999888777666664332 2 4566777777777777777776655444
No 472
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.15 E-value=33 Score=30.80 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=52.4
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc---chHHHHHHHHHHHhhhhHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN---SMKSHLLKANALILLERYDMAR 158 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~ 158 (476)
.++..+|.-|.+.|++ ++|++.|.++.+.... -...++.+-.+.+..++|....
T Consensus 37 ~~~~~l~~~~~~~Gd~-----------------------~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~ 93 (177)
T PF10602_consen 37 MALEDLADHYCKIGDL-----------------------EEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVE 93 (177)
T ss_pred HHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6788999999999999 9999999999887633 2446677777888999999999
Q ss_pred HHHhccccc
Q 011861 159 DAILSGLQV 167 (476)
Q Consensus 159 ~~~~~~l~l 167 (476)
..+.++-.+
T Consensus 94 ~~i~ka~~~ 102 (177)
T PF10602_consen 94 KYIEKAESL 102 (177)
T ss_pred HHHHHHHHH
Confidence 988887654
No 473
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=54.09 E-value=49 Score=35.71 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=72.1
Q ss_pred HHHhccHHHHHHHHHHHhcc-CCCCc-----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHH
Q 011861 57 AFRESNFEEAISNYSRANNI-KPGDP-----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (476)
Q Consensus 57 ~~~~~~~~~Ai~~y~~al~~-~p~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (476)
-+.+|+..+-+.-|++|++. +|..+ .+|...|..|-..|+. +.|-..+++|
T Consensus 357 ~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l-----------------------~~aRvifeka 413 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL-----------------------DDARVIFEKA 413 (835)
T ss_pred hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH-----------------------HHHHHHHHHh
Confidence 36789999999999999874 77654 7888899999999999 9999999999
Q ss_pred hhcccc----chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 131 LNLQSN----SMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 131 l~l~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
...+=. -...|..-|..-+.-.+++.|+...++|..+ |.+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN 457 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence 988632 2445556666666778899999999999876 444
No 474
>PRK04023 DNA polymerase II large subunit; Validated
Probab=53.74 E-value=8.5 Score=43.27 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=32.0
Q ss_pred CcccccccccccccCcEEccCCC-----cccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh-----~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.....|+-|.........-.||. .||..|- +......||.|.....
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCC
Confidence 44568999998764444447984 4899993 3334466999998874
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.54 E-value=21 Score=33.89 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=36.6
Q ss_pred HHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhh
Q 011861 51 VQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQF 97 (476)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~ 97 (476)
.+.|..||..|+|++|++.|..+....-.+ ..++..+..|+.++|+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 467899999999999999999996554332 26666777888888877
No 476
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.10 E-value=47 Score=34.60 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=68.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCC-C--cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPG-D--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~-~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.-....|.-...-+.|+.|..+|..|.++--. + +.+-.|+|..|++.++-
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~--------------------------- 420 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA--------------------------- 420 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH---------------------------
Confidence 34455677777788999999999999887433 2 34556788999987775
Q ss_pred HHHHHHhh-ccccc----------hHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 125 KDAEKLLN-LQSNS----------MKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 125 ~~~~~al~-l~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
+++.++++ +.|.| ...+|..|.-.+..+++.||...+.+.++..
T Consensus 421 ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 421 EDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 45555555 34442 2366677777788999999999999999876
No 477
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.02 E-value=50 Score=33.38 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=63.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC-CcccccchhHHH-HHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG-DPIVLGNRSSAY-IRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..++......+-++|-|.-|.+...-.+.+||. |+-.-...-..| ++.++| +--+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y-----------------------~~Li 159 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY-----------------------QWLI 159 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH-----------------------HHHH
Confidence 346667777888999999999999999999999 763222222222 233333 2223
Q ss_pred HHHHHHhhc-ccc----chHHHHHHHHHHHhhhhH---------------HHHHHHHhcccccCCC
Q 011861 125 KDAEKLLNL-QSN----SMKSHLLKANALILLERY---------------DMARDAILSGLQVDPF 170 (476)
Q Consensus 125 ~~~~~al~l-~p~----~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~~l~l~p~ 170 (476)
..++..... ..+ -+..-|..+.++..+++- +.|...+.+|+...|.
T Consensus 160 ~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 160 DFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 333332221 111 223456778888888877 7888888888776653
No 478
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.16 E-value=27 Score=32.07 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=37.6
Q ss_pred HHHHHhccHHHHHHHHHHHhccCCC----CcccccchhHHHHHHHhh
Q 011861 55 NRAFRESNFEEAISNYSRANNIKPG----DPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 55 ~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~ 97 (476)
-.||-+.|-++|+..|-+++++.+. |++++..+|.+|.+++++
T Consensus 148 AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 148 ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3466789999999999999998554 479999999999999998
No 479
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.13 E-value=35 Score=36.69 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=60.0
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc------cchHHHHHHHHHHHhhhhHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS------NSMKSHLLKANALILLERYD 155 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~ 155 (476)
.++-|-|.-++++.+| .-+++.|...+..-| ++.+....++.||..+.+.+
T Consensus 355 ~iLWn~A~~~F~~~~Y-----------------------~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD 411 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKY-----------------------VVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLD 411 (872)
T ss_pred HHHHHhhHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHH
Confidence 5667778889999999 999999999887544 35677888889999999999
Q ss_pred HHHHHHhcccccCCCCchhh
Q 011861 156 MARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 156 ~A~~~~~~~l~l~p~~~~~~ 175 (476)
.|.+.+..|-+.+|.+.-.+
T Consensus 412 ~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 412 NAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHHHhhccccHHHH
Confidence 99999999999998776543
No 480
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=50.90 E-value=8.9 Score=30.21 Aligned_cols=36 Identities=22% Similarity=0.873 Sum_probs=27.8
Q ss_pred ccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
--.|.+|...+..+ ||.||..|..+ .-.|.+|...+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK----KGICAMCGKKI 79 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc----cCcccccCCee
Confidence 34799998877765 88899999653 23599999876
No 481
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.64 E-value=22 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=29.2
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
..+.|....++|-.+=..|+.++|+.+|.++++.
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 4567888888888888889999999999999876
No 482
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=50.61 E-value=55 Score=38.47 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=88.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC--CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..-|...|..++++.+-++|-....+|++.-|. ...+...-|+.-++.|+. +.+-
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa-----------------------eRGR 1620 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA-----------------------ERGR 1620 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc-----------------------hhhH
Confidence 345667888899999999999999999999998 568888889999999999 9998
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
..++-.+.-.|.-...|.-....-+..|+-+.++..|++++++.=.
T Consensus 1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 9999999999998888887777778888999999999999887533
No 483
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.56 E-value=1.7e+02 Score=29.98 Aligned_cols=156 Identities=14% Similarity=0.032 Sum_probs=99.1
Q ss_pred HHHhccHHH-HHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 57 AFRESNFEE-AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 57 ~~~~~~~~~-Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
.-+.|.|+. +++.=.+.+..+|....+|..|=.++....-- ......+ .+.+.++-+.....++..+|
T Consensus 38 ~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~---~~~~~~e--------k~~~ld~eL~~~~~~L~~np 106 (421)
T KOG0529|consen 38 KREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR---AQLEPLE--------KQALLDEELKYVESALKVNP 106 (421)
T ss_pred HHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh---hcCCHHH--------HHHhhHHHHHHHHHHHHhCc
Confidence 345566654 77777777888999998888877776543321 0000001 11234778888999999999
Q ss_pred cchHHHHHHHHHHHhhhh--HHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhcccCCCCCCCCcccccccccccc-
Q 011861 136 NSMKSHLLKANALILLER--YDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIGRRIHGTPERTDDFDCTLCLKLL- 212 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~- 212 (476)
+.+.+|+.+.+++...+. +..-++..+++++.||.|-..+...+-+-........ .. ...=.+|-..+
T Consensus 107 ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~------~~---~~El~ftt~~I~ 177 (421)
T KOG0529|consen 107 KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN------LE---KEELEFTTKLIN 177 (421)
T ss_pred hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc------cc---hhHHHHHHHHHh
Confidence 999999999999986553 5777888999999999888877766555332222211 00 11112233322
Q ss_pred cCcEEccCCCcccHhhHHHhhh
Q 011861 213 YEPITTPCGHSFCRSCLFQSMD 234 (476)
Q Consensus 213 ~~P~~~~cgh~fC~~Cl~~~~~ 234 (476)
.++..++|.|. +.|+.+.+.
T Consensus 178 ~nfSNYsaWhy--Rs~lL~~l~ 197 (421)
T KOG0529|consen 178 DNFSNYSAWHY--RSLLLSTLH 197 (421)
T ss_pred ccchhhhHHHH--HHHHHHHhc
Confidence 25556788884 677765443
No 484
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.50 E-value=53 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
..+.......--+.|+.+.....-|..++..|+|.+|+..++...+-.+..+
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 5555555555557899999999999999999999999999998876554444
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.37 E-value=62 Score=32.95 Aligned_cols=46 Identities=7% Similarity=-0.013 Sum_probs=34.0
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhcc-CCCCc-ccccchhHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNI-KPGDP-IVLGNRSSAYIR 93 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~~-~~~~~~a~~~~~ 93 (476)
.....++..+|+.++|..|...+...... .++.. ..+..++.+|..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~ 179 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDA 179 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 45667888999999999999999999985 43332 355556566554
No 486
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.07 E-value=11 Score=36.38 Aligned_cols=46 Identities=28% Similarity=0.553 Sum_probs=35.3
Q ss_pred CCcccccccccccc--c-CcEEccCCCcccHhhHHHhhhcC---CCCccccc
Q 011861 199 RTDDFDCTLCLKLL--Y-EPITTPCGHSFCRSCLFQSMDRG---NKCPLCRA 244 (476)
Q Consensus 199 ~~~~~~C~iC~~~~--~-~P~~~~cgh~fC~~Cl~~~~~~~---~~Cp~cr~ 244 (476)
....|.||+-.+.- . -|+.+.|||..-+..+.+..++| +.||.|-.
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 45678999877653 2 45778999999999998877765 46999954
No 487
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.95 E-value=13 Score=28.33 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHhhccc
Q 011861 119 HAELALKDAEKLLNLQS 135 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p 135 (476)
|...|+....+|++.|.
T Consensus 2 le~~Ai~~a~~Ave~D~ 18 (76)
T cd02681 2 LERDAVQFARLAVQRDQ 18 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788888888888873
No 488
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=49.82 E-value=18 Score=42.25 Aligned_cols=48 Identities=29% Similarity=0.750 Sum_probs=32.9
Q ss_pred CCccccccccccc-c-cCc-EEccCCCcccHhhHHHhhhc---------C-CCCccccccc
Q 011861 199 RTDDFDCTLCLKL-L-YEP-ITTPCGHSFCRSCLFQSMDR---------G-NKCPLCRAVL 246 (476)
Q Consensus 199 ~~~~~~C~iC~~~-~-~~P-~~~~cgh~fC~~Cl~~~~~~---------~-~~Cp~cr~~~ 246 (476)
...+.-|-||+-. + ..| +.+.|+|.|+..|-.+.+.+ + -.||+|..++
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3445678888842 3 344 56899999999998764442 1 2499998765
No 489
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=49.64 E-value=17 Score=40.08 Aligned_cols=46 Identities=26% Similarity=0.758 Sum_probs=35.3
Q ss_pred ccccccccccccc--CcEEc--cCCCcccHhhHHHhhhc-------CCCCccccccc
Q 011861 201 DDFDCTLCLKLLY--EPITT--PCGHSFCRSCLFQSMDR-------GNKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~--~P~~~--~cgh~fC~~Cl~~~~~~-------~~~Cp~cr~~~ 246 (476)
..+.|.||.+.+. .|++. +|=|.|+..||..|-.. +-.||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4678999998765 66653 78899999999999763 23499998543
No 490
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=49.48 E-value=23 Score=29.68 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.0
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP 81 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~ 81 (476)
.-+..|..++.+|++++|..+|.+|+...|+=.
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 445789999999999999999999999998643
No 491
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=48.88 E-value=63 Score=35.97 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=62.1
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHH----------hccCCCCc----------ccccchhHHHHHHHhhhccCCCCCcccC
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRA----------NNIKPGDP----------IVLGNRSSAYIRISQFLKHRPPSASEYR 109 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~a----------l~~~p~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (476)
+...|..+-..+|-+.|+++|.++ +.-+|... .+|.--|+.....|+.
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem------------ 928 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM------------ 928 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch------------
Confidence 444555555667888888888776 22344333 3333334444444444
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhc---------------------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 110 PLNGLDPTTHAELALKDAEKLLNL---------------------QSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 110 ~~~~~~~~~~~~~a~~~~~~al~l---------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
+.|+..|..|-+. ...+-.|-|.+|.-|-..|++.+|+..|.+|-.
T Consensus 929 -----------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 929 -----------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -----------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7778777777553 233556888999999999999999999998754
No 492
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.68 E-value=50 Score=35.49 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=69.2
Q ss_pred hhHHHHHh----c-cHHHHHHHHHHHhccCCCCcccccchhHHHHHHH---hhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 53 KGNRAFRE----S-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS---QFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 53 ~g~~~~~~----~-~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.|..|++. . |+..|+..|.+|-.+. ++.+.+++|.+|..-. ++ ..|.
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~-----------------------~~A~ 348 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDY-----------------------RRAF 348 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccH-----------------------HHHH
Confidence 45556653 2 8899999999999887 5677778888876544 34 7888
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccC
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVD 168 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~ 168 (476)
..|..|... .+..+.+++|.+|.. ..+.+.|..+++++-+.+
T Consensus 349 ~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 349 EYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 888888554 588999999999853 457889999999998876
No 493
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.12 E-value=29 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
+.+...|+..++.+++-.||-+|++|+.+
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 35677899999999999999999999876
No 494
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=46.84 E-value=12 Score=26.34 Aligned_cols=37 Identities=27% Similarity=0.600 Sum_probs=22.9
Q ss_pred ccccccccccccCcEEccCCCcccHhhHHHhhhc--CCCCcccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR--GNKCPLCRAV 245 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~--~~~Cp~cr~~ 245 (476)
.|.||+|...+.. ..++..|....... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 5789999984332 23555666555442 2359999763
No 495
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.21 E-value=93 Score=29.91 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=69.3
Q ss_pred HHHHhhHHHHH----hccHHHHHHHHHHHhccCCCC-cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 49 DLVQKGNRAFR----ESNFEEAISNYSRANNIKPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 49 ~~~~~g~~~~~----~~~~~~Ai~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
.....|..++. ..|+.+|...|.+|-+..-.. .....+++.+|..-. . + ....-.-..|
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~-------~--------~~~~~~~~~A 174 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q-------A--------LAVAYDDKKA 174 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h-------h--------hcccHHHHhH
Confidence 34445566655 459999999999999886333 233556666665421 0 0 0000001578
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccCC
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDP 169 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p 169 (476)
+..+.+|-... ++.+.+.+|..|.. ..++.+|..+|.++-+...
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888887776 88899999988843 4489999999999987664
No 496
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=46.03 E-value=4.5 Score=23.16 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=5.4
Q ss_pred cCCCCccccc
Q 011861 235 RGNKCPLCRA 244 (476)
Q Consensus 235 ~~~~Cp~cr~ 244 (476)
....||.|..
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 3444666654
No 497
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.07 E-value=50 Score=37.56 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=42.6
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
...-|+..|..+.|+.|.-+|+- ..-|..+|..+..+|+| +.|...++|
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lgey-----------------------Q~AVD~aRK 1245 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEY-----------------------QGAVDAARK 1245 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHH-----------------------HHHHHHhhh
Confidence 44568999999999999998864 46688899999999999 888888888
Q ss_pred H
Q 011861 130 L 130 (476)
Q Consensus 130 a 130 (476)
|
T Consensus 1246 A 1246 (1666)
T KOG0985|consen 1246 A 1246 (1666)
T ss_pred c
Confidence 7
No 498
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.86 E-value=11 Score=35.83 Aligned_cols=34 Identities=32% Similarity=0.693 Sum_probs=27.8
Q ss_pred cccccccccccccCcEEccC----CCcccHhhHHHhhh
Q 011861 201 DDFDCTLCLKLLYEPITTPC----GHSFCRSCLFQSMD 234 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~c----gh~fC~~Cl~~~~~ 234 (476)
.-+.|.+|.+-+.+.-...| .|.||..|-.+...
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 34899999999999876666 59999999877665
No 499
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.67 E-value=45 Score=34.62 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=68.3
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
.+...-.-|+|+.|....+.+-..-..-..+..-+-.....+|++ ++|...+.-.+.
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~-----------------------~~a~s~a~~~l~ 385 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW-----------------------REALSTAEMMLS 385 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH-----------------------HHHHHHHHHHhc
Confidence 344455679999999988887666544455555666777889999 888887776665
Q ss_pred ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 133 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
-.=..++...--|-.-..+|-+++|...+++.+.++|..
T Consensus 386 ~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 386 NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 544445544444555567888999999999998888743
No 500
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.48 E-value=15 Score=27.35 Aligned_cols=27 Identities=26% Similarity=0.677 Sum_probs=20.7
Q ss_pred cCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 219 PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 219 ~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.-.|+||..|.+..+. -.||-|...+.
T Consensus 26 tfEcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 26 TFECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred EEeeehhHhHHHHhhc--CcCCCCCchhh
Confidence 3457999999986554 36999998874
Done!