Query 011861
Match_columns 476
No_of_seqs 426 out of 4058
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 100.0 1.8E-32 6.2E-37 254.3 14.6 174 288-475 8-189 (209)
2 3ljc_A ATP-dependent protease 100.0 1.2E-31 4.1E-36 255.6 11.7 175 287-475 16-198 (252)
3 1zbo_A Hypothetical protein BP 100.0 7.1E-31 2.4E-35 243.8 12.6 175 288-475 3-187 (210)
4 2c2l_A CHIP, carboxy terminus 99.9 6.8E-28 2.3E-32 233.9 12.4 199 46-269 3-274 (281)
5 2ane_A ATP-dependent protease 99.9 1.6E-22 5.5E-27 170.8 10.5 101 288-388 17-125 (125)
6 4gco_A Protein STI-1; structur 99.8 2.2E-19 7.4E-24 152.4 9.3 116 43-181 9-124 (126)
7 2hr2_A Hypothetical protein; a 99.7 2.2E-18 7.5E-23 150.7 6.8 126 42-190 6-154 (159)
8 3rkv_A Putative peptidylprolyl 99.7 3.3E-17 1.1E-21 144.3 8.4 127 41-190 5-150 (162)
9 4gcn_A Protein STI-1; structur 99.7 1.1E-16 3.9E-21 135.6 9.0 116 43-182 4-126 (127)
10 3upv_A Heat shock protein STI1 99.7 1.5E-16 5.1E-21 133.7 8.5 118 45-185 2-125 (126)
11 3sz7_A HSC70 cochaperone (SGT) 99.6 1.2E-15 4.2E-20 134.4 11.7 126 42-190 6-133 (164)
12 3gyz_A Chaperone protein IPGC; 99.6 1E-15 3.6E-20 133.9 9.3 107 43-172 32-138 (151)
13 2vgx_A Chaperone SYCD; alterna 99.6 2.5E-15 8.4E-20 130.9 10.2 124 44-190 18-141 (148)
14 2xcb_A PCRH, regulatory protei 99.6 3.5E-15 1.2E-19 128.4 9.6 124 44-190 15-138 (142)
15 2fbn_A 70 kDa peptidylprolyl i 99.6 7.6E-15 2.6E-19 133.5 11.1 147 21-190 12-174 (198)
16 4ga2_A E3 SUMO-protein ligase 99.6 3.1E-15 1.1E-19 130.4 7.0 114 45-181 29-143 (150)
17 1hxi_A PEX5, peroxisome target 99.5 2.6E-14 9E-19 119.8 9.0 103 48-173 18-120 (121)
18 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.6E-14 1.6E-18 146.0 10.9 124 42-188 263-401 (457)
19 3q49_B STIP1 homology and U bo 99.5 4.1E-14 1.4E-18 119.9 8.5 120 45-187 7-131 (137)
20 1elw_A TPR1-domain of HOP; HOP 99.5 1.4E-13 4.7E-18 112.4 10.9 115 46-183 3-117 (118)
21 1zu2_A Mitochondrial import re 99.5 5.9E-14 2E-18 122.3 8.2 117 59-188 14-141 (158)
22 1p5q_A FKBP52, FK506-binding p 99.5 1E-13 3.5E-18 137.5 11.0 123 42-187 142-279 (336)
23 1ihg_A Cyclophilin 40; ppiase 99.5 1.1E-13 3.6E-18 139.3 10.2 125 42-189 218-358 (370)
24 2lni_A Stress-induced-phosphop 99.5 1.3E-13 4.6E-18 115.2 9.1 120 40-182 9-128 (133)
25 3urz_A Uncharacterized protein 99.5 7.7E-14 2.6E-18 128.3 7.6 113 46-181 3-131 (208)
26 2dba_A Smooth muscle cell asso 99.4 2.4E-13 8.4E-18 116.0 9.9 117 43-182 24-143 (148)
27 2kr4_A Ubiquitin conjugation f 99.4 1E-13 3.5E-18 108.5 5.8 74 197-272 9-82 (85)
28 2pl2_A Hypothetical conserved 99.4 3.6E-13 1.2E-17 124.6 10.4 117 45-184 3-130 (217)
29 2if4_A ATFKBP42; FKBP-like, al 99.4 8.9E-14 3.1E-18 138.0 6.6 121 42-185 174-311 (338)
30 2vyi_A SGTA protein; chaperone 99.4 8.5E-13 2.9E-17 109.5 10.8 121 42-185 7-127 (131)
31 4gyw_A UDP-N-acetylglucosamine 99.4 3.3E-13 1.1E-17 146.7 10.0 114 44-180 6-119 (723)
32 1a17_A Serine/threonine protei 99.4 9.9E-13 3.4E-17 114.5 11.1 119 40-181 6-124 (166)
33 2xev_A YBGF; tetratricopeptide 99.4 7.1E-13 2.4E-17 110.9 9.5 113 49-184 4-122 (129)
34 4ga2_A E3 SUMO-protein ligase 99.4 9E-14 3.1E-18 121.1 4.0 107 53-182 3-109 (150)
35 1elr_A TPR2A-domain of HOP; HO 99.4 8.9E-13 3E-17 109.5 9.8 119 46-188 3-128 (131)
36 2kre_A Ubiquitin conjugation f 99.4 1.7E-13 5.7E-18 110.5 5.0 71 197-269 24-94 (100)
37 3fl2_A E3 ubiquitin-protein li 99.4 1.8E-13 6.1E-18 115.4 5.4 73 201-274 51-124 (124)
38 1t1h_A Gspef-atpub14, armadill 99.4 3.3E-13 1.1E-17 104.0 5.7 71 196-268 2-73 (78)
39 2h6f_A Protein farnesyltransfe 99.4 7.6E-13 2.6E-17 133.5 7.6 116 44-182 94-210 (382)
40 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-12 4.1E-17 142.4 9.6 114 46-182 42-155 (723)
41 1wgm_A Ubiquitin conjugation f 99.3 7E-13 2.4E-17 106.4 5.7 71 197-269 17-88 (98)
42 3urz_A Uncharacterized protein 99.3 6.3E-12 2.2E-16 115.3 12.6 105 53-181 60-199 (208)
43 2pl2_A Hypothetical conserved 99.3 3.6E-12 1.2E-16 117.8 10.7 114 45-182 37-161 (217)
44 4i17_A Hypothetical protein; T 99.3 3.2E-12 1.1E-16 118.3 10.3 106 47-175 7-113 (228)
45 2h6f_A Protein farnesyltransfe 99.3 1.6E-12 5.6E-17 131.1 8.5 117 45-184 129-246 (382)
46 3l11_A E3 ubiquitin-protein li 99.3 5.4E-13 1.8E-17 110.9 3.7 82 198-279 11-98 (115)
47 1z6u_A NP95-like ring finger p 99.3 1.1E-12 3.9E-17 113.9 5.4 73 201-274 77-150 (150)
48 2kck_A TPR repeat; tetratricop 99.3 1.7E-12 5.8E-17 104.8 6.1 103 47-172 6-111 (112)
49 3k9i_A BH0479 protein; putativ 99.3 3.8E-13 1.3E-17 111.5 2.1 98 59-179 2-102 (117)
50 1na0_A Designed protein CTPR3; 99.3 1E-11 3.4E-16 102.0 10.0 113 47-182 9-121 (125)
51 4i17_A Hypothetical protein; T 99.3 5.9E-12 2E-16 116.5 9.3 116 46-184 75-226 (228)
52 3vtx_A MAMA; tetratricopeptide 99.3 8.2E-12 2.8E-16 111.3 9.9 113 46-181 4-116 (184)
53 3vtx_A MAMA; tetratricopeptide 99.3 2E-12 7E-17 115.3 5.6 100 49-171 75-174 (184)
54 1wao_1 Serine/threonine protei 99.3 1.8E-12 6.2E-17 134.7 5.8 116 45-183 4-119 (477)
55 3ztg_A E3 ubiquitin-protein li 99.3 3.8E-12 1.3E-16 101.3 6.2 71 197-268 8-81 (92)
56 4ayc_A E3 ubiquitin-protein li 99.3 1.1E-12 3.8E-17 112.7 2.9 74 201-275 52-125 (138)
57 2ckl_A Polycomb group ring fin 99.3 4.2E-12 1.4E-16 104.2 6.2 74 200-273 13-89 (108)
58 2l6j_A TPR repeat-containing p 99.3 3.1E-12 1.1E-16 103.8 5.1 96 46-164 3-104 (111)
59 2e2e_A Formate-dependent nitri 99.2 2.2E-11 7.4E-16 108.1 9.9 117 46-183 43-160 (177)
60 2f42_A STIP1 homology and U-bo 99.2 9.8E-12 3.3E-16 110.1 7.3 70 196-267 100-170 (179)
61 2pzi_A Probable serine/threoni 99.2 2.1E-11 7.1E-16 132.3 7.9 112 45-180 431-542 (681)
62 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.8E-11 1.6E-15 108.7 9.1 104 47-173 37-156 (213)
63 3qky_A Outer membrane assembly 99.2 9.9E-11 3.4E-15 110.7 11.3 113 45-180 13-139 (261)
64 2y43_A E3 ubiquitin-protein li 99.2 1.5E-11 5.2E-16 99.2 4.8 65 201-267 21-86 (99)
65 3uq3_A Heat shock protein STI1 99.2 3.8E-11 1.3E-15 111.9 8.2 113 46-181 138-256 (258)
66 3gyz_A Chaperone protein IPGC; 99.2 6.6E-12 2.2E-16 109.6 2.2 99 65-186 20-118 (151)
67 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.4E-10 4.9E-15 107.4 11.4 112 47-181 4-139 (225)
68 2csy_A Zinc finger protein 183 99.2 2.5E-11 8.5E-16 94.1 5.2 63 197-262 10-72 (81)
69 3lrq_A E3 ubiquitin-protein li 99.2 1.8E-11 6.1E-16 98.9 4.2 63 201-265 21-85 (100)
70 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.1E-10 3.7E-15 110.2 10.2 110 44-176 40-149 (275)
71 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.2E-10 4.1E-15 106.1 9.9 102 45-172 4-105 (213)
72 3ieg_A DNAJ homolog subfamily 99.1 1.5E-10 5.3E-15 113.0 11.3 118 49-189 236-357 (359)
73 2yu4_A E3 SUMO-protein ligase 99.1 2.4E-11 8.3E-16 96.9 4.4 68 200-269 5-82 (94)
74 2vsy_A XCC0866; transferase, g 99.1 9.7E-11 3.3E-15 124.0 10.3 119 44-185 20-138 (568)
75 4abn_A Tetratricopeptide repea 99.1 1E-10 3.5E-15 121.3 10.2 118 48-188 171-308 (474)
76 2egp_A Tripartite motif-contai 99.1 4.3E-12 1.5E-16 97.9 -0.3 62 197-260 7-75 (79)
77 2pzi_A Probable serine/threoni 99.1 3.9E-11 1.3E-15 130.1 6.1 111 47-181 467-577 (681)
78 2kc7_A BFR218_protein; tetratr 99.1 1E-10 3.4E-15 93.2 7.0 93 50-173 3-96 (99)
79 2fo7_A Synthetic consensus TPR 99.1 2.6E-10 9E-15 94.4 9.7 110 48-180 2-111 (136)
80 3ieg_A DNAJ homolog subfamily 99.1 2.2E-10 7.6E-15 111.8 10.4 111 46-179 2-115 (359)
81 2gw1_A Mitochondrial precursor 99.1 2.6E-10 8.7E-15 117.6 10.6 107 44-174 3-109 (514)
82 4abn_A Tetratricopeptide repea 99.1 1.9E-10 6.4E-15 119.3 9.5 114 46-183 101-224 (474)
83 2r5s_A Uncharacterized protein 99.1 4.5E-11 1.5E-15 106.3 4.2 131 48-182 7-154 (176)
84 2ckl_B Ubiquitin ligase protei 99.1 4.9E-11 1.7E-15 105.6 4.2 70 199-269 51-122 (165)
85 2ecw_A Tripartite motif-contai 99.1 2.2E-11 7.5E-16 95.1 1.7 63 196-260 13-81 (85)
86 2kat_A Uncharacterized protein 99.1 9E-11 3.1E-15 96.4 5.4 87 64-173 2-88 (115)
87 3u4t_A TPR repeat-containing p 99.1 2.4E-10 8.2E-15 107.8 9.0 113 48-184 4-120 (272)
88 3as5_A MAMA; tetratricopeptide 99.1 5.3E-10 1.8E-14 98.2 10.5 112 47-181 42-153 (186)
89 3qky_A Outer membrane assembly 99.1 4.9E-10 1.7E-14 105.9 10.9 116 47-185 89-242 (261)
90 2djb_A Polycomb group ring fin 99.1 1E-10 3.5E-15 88.3 5.0 53 195-247 8-61 (72)
91 2yur_A Retinoblastoma-binding 99.1 1.2E-10 3.9E-15 88.6 5.2 52 196-247 9-63 (74)
92 3fp2_A TPR repeat-containing p 99.1 1.2E-10 4.2E-15 121.0 6.9 109 42-174 20-128 (537)
93 3as5_A MAMA; tetratricopeptide 99.1 3.5E-10 1.2E-14 99.4 8.8 113 46-181 7-119 (186)
94 2q7f_A YRRB protein; TPR, prot 99.1 2.5E-10 8.4E-15 105.6 8.2 113 46-181 90-202 (243)
95 4gco_A Protein STI-1; structur 99.1 7.6E-11 2.6E-15 99.3 4.2 93 71-186 3-95 (126)
96 3qou_A Protein YBBN; thioredox 99.1 2.7E-10 9.1E-15 110.0 8.5 136 46-185 116-268 (287)
97 4eqf_A PEX5-related protein; a 99.0 3.3E-10 1.1E-14 112.1 8.6 102 47-171 213-314 (365)
98 2d8t_A Dactylidin, ring finger 99.0 1.4E-10 4.9E-15 87.3 4.5 51 197-247 10-60 (71)
99 2ecv_A Tripartite motif-contai 99.0 3.4E-11 1.2E-15 94.0 1.0 62 197-260 14-81 (85)
100 1fch_A Peroxisomal targeting s 99.0 4.5E-10 1.5E-14 110.8 8.8 103 46-171 216-318 (368)
101 1jm7_B BARD1, BRCA1-associated 99.0 1E-10 3.6E-15 97.3 3.5 63 201-267 21-84 (117)
102 3u4t_A TPR repeat-containing p 99.0 1.3E-09 4.3E-14 102.8 11.4 108 48-179 38-149 (272)
103 2fo7_A Synthetic consensus TPR 99.0 6.1E-10 2.1E-14 92.1 8.1 102 47-171 35-136 (136)
104 4eqf_A PEX5-related protein; a 99.0 1.5E-10 5E-15 114.7 5.0 108 45-175 63-170 (365)
105 2vgx_A Chaperone SYCD; alterna 99.0 8.7E-11 3E-15 101.8 2.8 97 66-185 6-102 (148)
106 1w3b_A UDP-N-acetylglucosamine 99.0 5.4E-10 1.8E-14 111.6 9.0 114 45-181 235-348 (388)
107 2e2e_A Formate-dependent nitri 99.0 5E-11 1.7E-15 105.6 1.3 110 50-182 13-125 (177)
108 3hym_B Cell division cycle pro 99.0 9.6E-10 3.3E-14 106.2 10.5 112 47-181 193-313 (330)
109 2y4t_A DNAJ homolog subfamily 99.0 6.5E-10 2.2E-14 112.9 9.7 114 42-178 21-137 (450)
110 3uq3_A Heat shock protein STI1 99.0 5.9E-10 2E-14 103.7 8.5 113 47-182 79-217 (258)
111 2ecy_A TNF receptor-associated 99.0 2E-10 6.7E-15 85.2 4.0 51 197-247 10-61 (66)
112 2q7f_A YRRB protein; TPR, prot 99.0 8.8E-10 3E-14 101.8 9.4 114 45-181 55-168 (243)
113 1jm7_A BRCA1, breast cancer ty 99.0 1.9E-10 6.4E-15 94.9 4.3 64 202-267 21-87 (112)
114 2y4t_A DNAJ homolog subfamily 99.0 9.9E-10 3.4E-14 111.5 10.5 117 49-188 259-379 (450)
115 2vq2_A PILW, putative fimbrial 99.0 9.8E-10 3.4E-14 99.9 9.5 112 44-178 5-119 (225)
116 1w3b_A UDP-N-acetylglucosamine 99.0 1.3E-09 4.5E-14 108.8 11.2 116 45-183 201-316 (388)
117 2ysl_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 85.7 5.2 51 197-247 15-68 (73)
118 1na3_A Designed protein CTPR2; 99.0 1.1E-09 3.9E-14 85.0 8.2 85 45-152 7-91 (91)
119 3hct_A TNF receptor-associated 99.0 2.4E-10 8.2E-15 95.2 4.4 67 197-265 13-80 (118)
120 1fch_A Peroxisomal targeting s 99.0 1.1E-09 3.7E-14 108.0 9.4 107 47-176 64-170 (368)
121 3hym_B Cell division cycle pro 99.0 2.2E-09 7.5E-14 103.7 11.3 112 47-181 90-202 (330)
122 2ho1_A Type 4 fimbrial biogene 99.0 1.1E-09 3.6E-14 102.2 8.7 112 46-180 36-149 (252)
123 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.3E-09 7.8E-14 99.2 10.8 119 47-174 41-183 (225)
124 2ysj_A Tripartite motif-contai 99.0 5.8E-10 2E-14 81.8 5.3 46 197-242 15-63 (63)
125 2ho1_A Type 4 fimbrial biogene 99.0 1.8E-09 6.2E-14 100.6 9.7 113 47-182 71-185 (252)
126 1p5q_A FKBP52, FK506-binding p 98.9 2E-09 6.8E-14 106.4 9.5 97 47-166 196-293 (336)
127 2vq2_A PILW, putative fimbrial 98.9 2.5E-09 8.6E-14 97.2 9.2 113 47-182 42-157 (225)
128 3mkr_A Coatomer subunit epsilo 98.9 1.3E-09 4.4E-14 105.5 7.7 56 121-176 183-238 (291)
129 2ct2_A Tripartite motif protei 98.9 8E-10 2.7E-14 86.8 5.0 52 196-247 9-67 (88)
130 2ea6_A Ring finger protein 4; 98.9 5.4E-10 1.8E-14 83.5 3.8 51 197-247 10-67 (69)
131 3cv0_A Peroxisome targeting si 98.9 1.9E-09 6.4E-14 104.0 8.5 101 47-170 172-272 (327)
132 3ng2_A RNF4, snurf, ring finge 98.9 3.9E-10 1.3E-14 84.8 2.8 49 199-247 7-62 (71)
133 1xnf_A Lipoprotein NLPI; TPR, 98.9 4.9E-09 1.7E-13 98.6 10.7 104 47-173 77-250 (275)
134 2xcb_A PCRH, regulatory protei 98.9 5.6E-10 1.9E-14 95.5 3.6 94 68-184 5-98 (142)
135 3cv0_A Peroxisome targeting si 98.9 2.6E-09 9E-14 102.9 8.8 109 46-177 20-128 (327)
136 1rmd_A RAG1; V(D)J recombinati 98.9 9.2E-10 3.1E-14 91.4 4.7 65 200-265 21-86 (116)
137 1wao_1 Serine/threonine protei 98.9 2.1E-09 7.3E-14 111.5 8.3 106 46-174 39-157 (477)
138 3mkr_A Coatomer subunit epsilo 98.9 5.9E-09 2E-13 100.8 10.8 95 60-177 179-274 (291)
139 1qqe_A Vesicular transport pro 98.9 2.5E-09 8.6E-14 103.2 7.7 106 47-175 117-236 (292)
140 2vsy_A XCC0866; transferase, g 98.9 3.7E-09 1.3E-13 111.8 9.5 107 46-175 56-165 (568)
141 2ecj_A Tripartite motif-contai 98.9 1.4E-09 4.9E-14 78.2 4.3 47 196-242 9-58 (58)
142 3htk_C E3 SUMO-protein ligase 98.9 1.2E-09 4.1E-14 101.3 4.8 66 199-266 178-248 (267)
143 1a17_A Serine/threonine protei 98.9 5.7E-09 2E-13 90.3 8.8 97 47-166 47-145 (166)
144 2xeu_A Ring finger protein 4; 98.9 7.2E-10 2.5E-14 81.4 2.5 47 201-247 2-55 (64)
145 3ma5_A Tetratricopeptide repea 98.9 8.7E-10 3E-14 88.5 3.1 76 76-174 2-77 (100)
146 2ecn_A Ring finger protein 141 98.9 1.6E-09 5.4E-14 81.2 4.2 50 197-247 10-59 (70)
147 3knv_A TNF receptor-associated 98.9 1.1E-09 3.6E-14 94.1 3.6 48 199-246 28-76 (141)
148 1bor_A Transcription factor PM 98.8 6.5E-10 2.2E-14 79.4 1.9 46 200-248 4-49 (56)
149 1iym_A EL5; ring-H2 finger, ub 98.8 1.6E-09 5.5E-14 77.0 3.9 47 200-246 3-53 (55)
150 2ect_A Ring finger protein 126 98.8 2.4E-09 8.2E-14 82.1 5.0 52 196-247 9-63 (78)
151 1chc_A Equine herpes virus-1 r 98.8 1.3E-09 4.3E-14 81.2 3.0 47 201-247 4-51 (68)
152 2kiz_A E3 ubiquitin-protein li 98.8 2.7E-09 9.4E-14 79.6 4.8 50 198-247 10-62 (69)
153 2ecm_A Ring finger and CHY zin 98.8 1.7E-09 5.7E-14 76.9 3.2 46 201-246 4-53 (55)
154 1g25_A CDK-activating kinase a 98.8 1.7E-09 6E-14 79.7 3.4 47 201-247 2-54 (65)
155 2l0b_A E3 ubiquitin-protein li 98.8 3.2E-09 1.1E-13 84.0 4.3 49 199-247 37-88 (91)
156 1qqe_A Vesicular transport pro 98.8 7.3E-09 2.5E-13 99.9 7.6 105 47-174 77-194 (292)
157 4g1t_A Interferon-induced prot 98.8 1.4E-08 4.7E-13 103.9 10.0 113 47-182 51-182 (472)
158 1x4j_A Ring finger protein 38; 98.8 3.1E-09 1.1E-13 80.8 3.8 49 199-247 20-71 (75)
159 3fp2_A TPR repeat-containing p 98.8 8E-09 2.7E-13 107.2 8.3 106 47-176 243-348 (537)
160 2ep4_A Ring finger protein 24; 98.8 2.7E-09 9.1E-14 80.9 3.4 52 196-247 9-63 (74)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.1E-08 3.9E-13 105.4 9.3 97 47-166 317-414 (457)
162 2if4_A ATFKBP42; FKBP-like, al 98.8 2.3E-09 8E-14 106.0 4.0 103 49-174 232-335 (338)
163 2fbn_A 70 kDa peptidylprolyl i 98.8 1.6E-08 5.4E-13 91.3 8.8 98 47-167 88-186 (198)
164 3rkv_A Putative peptidylprolyl 98.8 1.5E-08 5.1E-13 88.3 8.2 91 43-156 59-150 (162)
165 3hcs_A TNF receptor-associated 98.8 4.1E-09 1.4E-13 93.7 4.4 67 197-265 13-80 (170)
166 2xpi_A Anaphase-promoting comp 98.8 1.2E-08 4E-13 107.7 8.7 112 47-181 475-593 (597)
167 2c2l_A CHIP, carboxy terminus 98.8 6.2E-09 2.1E-13 100.0 5.8 108 46-176 37-173 (281)
168 2gw1_A Mitochondrial precursor 98.7 1.2E-08 4E-13 105.1 7.9 113 47-182 372-493 (514)
169 2vyi_A SGTA protein; chaperone 98.7 2E-08 6.9E-13 82.5 7.4 86 47-155 46-131 (131)
170 1dce_A Protein (RAB geranylger 98.7 2.8E-08 9.5E-13 105.2 10.2 117 45-184 61-190 (567)
171 2ond_A Cleavage stimulation fa 98.7 3.1E-08 1.1E-12 96.1 9.8 108 49-179 101-210 (308)
172 1e4u_A Transcriptional repress 98.7 1.2E-08 3.9E-13 78.0 5.2 50 198-247 7-61 (78)
173 2ond_A Cleavage stimulation fa 98.7 5.6E-08 1.9E-12 94.3 11.2 109 46-177 49-173 (308)
174 3k9i_A BH0479 protein; putativ 98.7 2.1E-08 7.3E-13 82.4 7.0 89 43-165 23-111 (117)
175 4gcn_A Protein STI-1; structur 98.7 8.1E-09 2.8E-13 86.7 4.2 72 81-175 8-79 (127)
176 3sz7_A HSC70 cochaperone (SGT) 98.7 2.4E-08 8.1E-13 87.2 7.3 82 46-150 44-125 (164)
177 1ihg_A Cyclophilin 40; ppiase 98.7 4.9E-08 1.7E-12 97.8 10.4 91 47-160 273-363 (370)
178 1dce_A Protein (RAB geranylger 98.7 3E-08 1E-12 105.0 9.1 118 44-184 104-238 (567)
179 3edt_B KLC 2, kinesin light ch 98.7 9.4E-09 3.2E-13 96.5 4.6 101 44-167 40-156 (283)
180 2xpi_A Anaphase-promoting comp 98.7 4.9E-08 1.7E-12 102.9 10.5 111 47-180 373-483 (597)
181 2lni_A Stress-induced-phosphop 98.7 3.6E-08 1.2E-12 81.6 7.5 85 46-153 49-133 (133)
182 2l6j_A TPR repeat-containing p 98.7 1.9E-08 6.6E-13 80.9 5.6 69 80-171 3-71 (111)
183 1na3_A Designed protein CTPR2; 98.7 1.4E-08 4.9E-13 78.6 4.6 81 79-182 7-87 (91)
184 2kck_A TPR repeat; tetratricop 98.7 2.3E-08 7.9E-13 80.0 6.0 87 76-185 1-89 (112)
185 3ma5_A Tetratricopeptide repea 98.7 5E-08 1.7E-12 78.0 7.8 85 45-152 5-91 (100)
186 1v87_A Deltex protein 2; ring- 98.7 1.2E-08 4E-13 84.3 3.8 47 201-247 24-93 (114)
187 3upv_A Heat shock protein STI1 98.7 4.5E-08 1.6E-12 81.2 7.5 81 46-149 37-123 (126)
188 1zu2_A Mitochondrial import re 98.6 4.3E-08 1.5E-12 85.2 7.3 72 45-139 34-126 (158)
189 3bee_A Putative YFRE protein; 98.6 6.3E-08 2.2E-12 76.8 7.6 82 77-181 2-86 (93)
190 4a1s_A PINS, partner of inscut 98.6 3.1E-08 1.1E-12 99.2 7.2 102 44-168 45-156 (411)
191 1pc2_A Mitochondria fission pr 98.6 3.7E-08 1.3E-12 84.8 6.5 104 61-187 12-120 (152)
192 4ap4_A E3 ubiquitin ligase RNF 98.6 9.8E-09 3.4E-13 87.0 2.8 48 200-247 5-59 (133)
193 4ic3_A E3 ubiquitin-protein li 98.6 1.1E-08 3.9E-13 77.4 2.5 43 201-247 23-66 (74)
194 3ro2_A PINS homolog, G-protein 98.6 5.3E-08 1.8E-12 93.5 7.7 104 46-172 4-117 (338)
195 2ifu_A Gamma-SNAP; membrane fu 98.6 4.5E-08 1.5E-12 95.0 7.0 104 47-175 116-231 (307)
196 3edt_B KLC 2, kinesin light ch 98.6 5E-08 1.7E-12 91.5 7.2 101 44-167 82-198 (283)
197 2ecl_A Ring-box protein 2; RNF 98.6 2.5E-08 8.5E-13 76.9 4.0 47 201-247 14-75 (81)
198 2kc7_A BFR218_protein; tetratr 98.6 8.2E-08 2.8E-12 75.9 7.0 69 84-175 3-72 (99)
199 3dra_A Protein farnesyltransfe 98.6 8.8E-08 3E-12 93.2 8.6 118 46-186 102-234 (306)
200 1hxi_A PEX5, peroxisome target 98.6 6.4E-08 2.2E-12 80.4 6.5 81 82-185 18-98 (121)
201 3ro3_A PINS homolog, G-protein 98.6 4.5E-08 1.5E-12 83.4 5.2 103 44-169 6-120 (164)
202 3dss_A Geranylgeranyl transfer 98.6 1.8E-07 6E-12 91.8 10.0 115 44-181 105-236 (331)
203 3q49_B STIP1 homology and U bo 98.6 6.9E-08 2.4E-12 80.8 6.1 85 75-182 3-87 (137)
204 3nf1_A KLC 1, kinesin light ch 98.6 5.3E-08 1.8E-12 93.0 5.9 103 45-170 151-310 (311)
205 4g1t_A Interferon-induced prot 98.6 1.1E-07 3.8E-12 97.1 8.6 124 47-174 247-370 (472)
206 3dra_A Protein farnesyltransfe 98.5 1.5E-07 5.3E-12 91.4 8.8 115 47-184 67-192 (306)
207 3u3w_A Transcriptional activat 98.5 4.9E-08 1.7E-12 94.0 5.2 101 45-168 153-267 (293)
208 2hr2_A Hypothetical protein; a 98.5 4.9E-08 1.7E-12 85.0 4.5 74 46-142 56-140 (159)
209 3sf4_A G-protein-signaling mod 98.5 7.8E-08 2.7E-12 95.5 6.7 104 45-171 7-120 (406)
210 2bay_A PRE-mRNA splicing facto 98.5 2.6E-08 8.8E-13 72.1 2.2 46 202-247 3-49 (61)
211 3nf1_A KLC 1, kinesin light ch 98.5 1.7E-07 5.7E-12 89.4 8.3 108 38-168 18-141 (311)
212 2y1n_A E3 ubiquitin-protein li 98.5 4.3E-08 1.5E-12 96.8 4.0 45 203-247 333-378 (389)
213 1ouv_A Conserved hypothetical 98.5 2.2E-07 7.6E-12 87.8 8.9 106 45-179 4-117 (273)
214 2qfc_A PLCR protein; TPR, HTH, 98.5 1.2E-07 4E-12 91.3 7.0 100 46-168 154-267 (293)
215 3q7a_A Farnesyltransferase alp 98.5 2.6E-07 9E-12 91.0 9.5 124 46-184 122-254 (349)
216 1na0_A Designed protein CTPR3; 98.5 2.7E-07 9.1E-12 75.0 8.1 83 47-152 43-125 (125)
217 2kat_A Uncharacterized protein 98.5 3.6E-07 1.2E-11 74.5 8.6 86 46-154 18-105 (115)
218 3ulq_A Response regulator aspa 98.5 1.3E-07 4.5E-12 94.3 7.1 102 43-167 139-253 (383)
219 4f3v_A ESX-1 secretion system 98.5 9.7E-08 3.3E-12 91.3 5.7 114 43-181 132-250 (282)
220 2vje_A E3 ubiquitin-protein li 98.5 5.7E-08 1.9E-12 71.2 2.9 49 199-247 5-56 (64)
221 1elw_A TPR1-domain of HOP; HOP 98.5 3.5E-07 1.2E-11 73.6 8.0 79 47-148 38-116 (118)
222 3q7a_A Farnesyltransferase alp 98.5 3.9E-07 1.3E-11 89.8 9.8 110 48-180 54-167 (349)
223 2vje_B MDM4 protein; proto-onc 98.5 6.3E-08 2.2E-12 70.7 3.0 48 200-247 5-55 (63)
224 2r5s_A Uncharacterized protein 98.5 9.8E-08 3.3E-12 84.4 4.8 83 61-166 88-172 (176)
225 3u3w_A Transcriptional activat 98.5 2.5E-07 8.4E-12 89.0 7.9 98 51-171 119-229 (293)
226 3qou_A Protein YBBN; thioredox 98.5 2E-07 6.8E-12 89.7 7.3 92 52-166 190-283 (287)
227 3dpl_R Ring-box protein 1; ubi 98.5 9.6E-08 3.3E-12 77.3 4.0 46 201-246 36-99 (106)
228 3ro3_A PINS homolog, G-protein 98.5 1.4E-07 4.9E-12 80.2 5.3 100 47-169 49-160 (164)
229 3ulq_A Response regulator aspa 98.4 1.8E-07 6.1E-12 93.3 6.7 103 44-169 181-295 (383)
230 3dss_A Geranylgeranyl transfer 98.4 4.4E-07 1.5E-11 89.0 9.1 117 46-185 63-192 (331)
231 3gw4_A Uncharacterized protein 98.4 1.6E-07 5.5E-12 84.0 5.3 102 45-169 24-138 (203)
232 2ecg_A Baculoviral IAP repeat- 98.4 6.6E-08 2.2E-12 73.4 1.8 42 202-247 25-67 (75)
233 2ifu_A Gamma-SNAP; membrane fu 98.4 7.9E-08 2.7E-12 93.3 2.6 100 48-171 77-188 (307)
234 2qfc_A PLCR protein; TPR, HTH, 98.4 6.5E-07 2.2E-11 86.0 9.0 97 50-169 118-227 (293)
235 3q15_A PSP28, response regulat 98.4 6.1E-07 2.1E-11 89.4 9.1 103 45-170 180-293 (378)
236 2dba_A Smooth muscle cell asso 98.4 9.2E-07 3.1E-11 74.5 8.5 79 47-148 65-143 (148)
237 3n71_A Histone lysine methyltr 98.4 5.9E-07 2E-11 93.1 8.0 113 46-181 308-441 (490)
238 4ap4_A E3 ubiquitin ligase RNF 98.3 1.3E-07 4.4E-12 80.0 2.4 48 200-247 70-124 (133)
239 2xev_A YBGF; tetratricopeptide 98.3 1.1E-06 3.7E-11 72.5 7.9 79 47-148 39-120 (129)
240 2v5f_A Prolyl 4-hydroxylase su 98.3 1.1E-06 3.9E-11 70.8 7.7 77 46-145 4-87 (104)
241 3sf4_A G-protein-signaling mod 98.3 3.5E-07 1.2E-11 90.7 5.5 103 46-171 186-300 (406)
242 2yho_A E3 ubiquitin-protein li 98.3 2.5E-07 8.4E-12 70.8 2.7 42 202-247 18-60 (79)
243 3qww_A SET and MYND domain-con 98.3 6.7E-07 2.3E-11 91.2 6.7 112 47-181 298-430 (433)
244 3q15_A PSP28, response regulat 98.3 8E-07 2.7E-11 88.5 6.9 115 43-180 137-269 (378)
245 1ouv_A Conserved hypothetical 98.3 1.7E-06 5.9E-11 81.6 8.9 95 47-168 38-144 (273)
246 3ro2_A PINS homolog, G-protein 98.3 4.9E-07 1.7E-11 86.6 4.9 102 47-171 183-296 (338)
247 3ly7_A Transcriptional activat 98.3 1.7E-06 5.8E-11 85.3 8.6 123 46-172 195-344 (372)
248 2ea5_A Cell growth regulator w 98.3 6.9E-07 2.4E-11 66.2 4.4 47 197-247 10-57 (68)
249 3rjv_A Putative SEL1 repeat pr 98.3 9.3E-07 3.2E-11 80.9 6.3 107 45-179 16-132 (212)
250 2ooe_A Cleavage stimulation fa 98.3 2.1E-06 7E-11 89.7 9.6 114 47-183 321-436 (530)
251 3qwp_A SET and MYND domain-con 98.3 1.9E-06 6.6E-11 87.8 9.1 117 47-186 287-424 (429)
252 3gw4_A Uncharacterized protein 98.2 1.1E-06 3.7E-11 78.5 5.4 103 45-170 64-179 (203)
253 4a1s_A PINS, partner of inscut 98.2 8.1E-07 2.8E-11 88.8 4.9 99 47-168 86-213 (411)
254 2ooe_A Cleavage stimulation fa 98.2 5.4E-06 1.8E-10 86.5 11.3 106 47-175 272-393 (530)
255 3rjv_A Putative SEL1 repeat pr 98.2 1.3E-06 4.5E-11 79.8 5.8 106 47-179 50-169 (212)
256 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-06 6.4E-11 70.5 6.0 84 47-154 38-128 (131)
257 4a0k_B E3 ubiquitin-protein li 98.1 3.6E-07 1.2E-11 75.0 0.2 45 202-246 48-110 (117)
258 3t6p_A Baculoviral IAP repeat- 98.1 6.9E-07 2.4E-11 87.7 1.7 43 201-247 294-337 (345)
259 1wim_A KIAA0161 protein; ring 98.1 5.8E-07 2E-11 71.3 0.6 45 201-245 4-61 (94)
260 4f3v_A ESX-1 secretion system 98.0 3.2E-06 1.1E-10 80.7 5.2 97 48-168 103-201 (282)
261 1nzn_A CGI-135 protein, fissio 98.0 6.6E-06 2.3E-10 68.2 6.3 110 58-187 12-123 (126)
262 3m62_A Ubiquitin conjugation f 98.0 4.1E-06 1.4E-10 91.0 5.8 74 197-272 886-960 (968)
263 2d8s_A Cellular modulator of i 98.0 6E-06 2.1E-10 63.1 4.6 49 199-247 12-69 (80)
264 1hz4_A MALT regulatory protein 98.0 8.5E-06 2.9E-10 80.5 6.6 103 46-171 52-168 (373)
265 2v5f_A Prolyl 4-hydroxylase su 97.9 1.5E-05 5.1E-10 64.1 5.8 83 82-187 6-95 (104)
266 3bee_A Putative YFRE protein; 97.9 1.4E-05 4.6E-10 63.1 5.2 70 45-137 4-76 (93)
267 3u64_A Protein TP_0956; tetrat 97.9 1E-05 3.5E-10 76.8 5.1 88 61-171 177-273 (301)
268 1klx_A Cysteine rich protein B 97.9 1.9E-05 6.4E-10 67.0 6.1 89 53-168 31-127 (138)
269 1hz4_A MALT regulatory protein 97.8 1.5E-05 5E-10 78.7 6.1 97 49-168 95-204 (373)
270 2ct0_A Non-SMC element 1 homol 97.7 8.2E-05 2.8E-09 55.6 6.5 48 200-247 13-63 (74)
271 3n71_A Histone lysine methyltr 97.7 3.8E-05 1.3E-09 79.5 5.7 105 39-166 343-463 (490)
272 2xm6_A Protein corresponding t 97.6 4.6E-05 1.6E-09 78.6 6.1 93 50-169 331-434 (490)
273 1pc2_A Mitochondria fission pr 97.6 6.2E-05 2.1E-09 64.6 5.4 79 47-148 32-115 (152)
274 3e4b_A ALGK; tetratricopeptide 97.5 0.00011 3.9E-09 75.1 7.5 103 49-179 178-290 (452)
275 3mv2_B Coatomer subunit epsilo 97.5 0.0002 6.8E-09 69.2 8.6 100 48-170 101-210 (310)
276 1y8m_A FIS1; mitochondria, unk 97.5 0.00015 5E-09 61.1 6.4 89 79-187 37-126 (144)
277 3o48_A Mitochondria fission 1 97.5 0.00016 5.5E-09 60.1 6.1 67 121-187 60-127 (134)
278 2xm6_A Protein corresponding t 97.5 0.00026 9E-09 72.8 8.9 103 45-176 37-151 (490)
279 1xi4_A Clathrin heavy chain; a 97.4 0.00025 8.6E-09 80.3 9.0 104 47-181 1195-1323(1630)
280 3e4b_A ALGK; tetratricopeptide 97.4 0.0003 1E-08 71.9 8.9 99 51-181 217-327 (452)
281 3ffl_A Anaphase-promoting comp 97.4 0.00025 8.6E-09 61.3 6.7 93 49-164 22-148 (167)
282 1b89_A Protein (clathrin heavy 97.4 0.00016 5.6E-09 73.0 6.2 96 49-180 124-249 (449)
283 3mv2_B Coatomer subunit epsilo 97.4 0.00025 8.5E-09 68.5 6.6 98 53-178 182-293 (310)
284 1klx_A Cysteine rich protein B 97.3 0.00026 9E-09 59.7 5.6 89 60-179 8-100 (138)
285 4b4t_Q 26S proteasome regulato 97.3 0.00057 1.9E-08 68.4 8.4 102 45-169 53-206 (434)
286 4b4t_Q 26S proteasome regulato 97.2 0.00039 1.3E-08 69.6 6.7 95 49-166 6-123 (434)
287 1xi4_A Clathrin heavy chain; a 97.1 0.00047 1.6E-08 78.2 6.1 65 78-170 1102-1166(1630)
288 3u64_A Protein TP_0956; tetrat 97.0 0.0021 7.1E-08 61.0 8.9 121 45-177 104-244 (301)
289 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00051 1.7E-08 49.1 3.5 47 201-247 5-58 (60)
290 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00027 9.1E-09 67.9 1.7 48 200-247 306-372 (381)
291 3vk6_A E3 ubiquitin-protein li 96.7 0.001 3.5E-08 51.8 3.4 43 204-246 3-47 (101)
292 3ly7_A Transcriptional activat 96.7 0.0022 7.4E-08 63.2 6.4 91 48-162 278-369 (372)
293 3qwp_A SET and MYND domain-con 96.6 0.0025 8.4E-08 64.7 6.4 91 37-150 319-425 (429)
294 1b89_A Protein (clathrin heavy 96.5 0.0046 1.6E-07 62.5 7.4 107 47-181 148-291 (449)
295 3qww_A SET and MYND domain-con 96.3 0.0023 7.9E-08 65.0 4.4 78 39-139 332-422 (433)
296 1nzn_A CGI-135 protein, fissio 96.1 0.01 3.5E-07 49.0 6.1 78 48-148 36-118 (126)
297 2ff4_A Probable regulatory pro 95.9 0.033 1.1E-06 55.6 10.0 101 43-166 111-233 (388)
298 3o48_A Mitochondria fission 1 95.8 0.011 3.8E-07 49.0 5.2 98 29-149 8-123 (134)
299 1y8m_A FIS1; mitochondria, unk 95.8 0.029 9.9E-07 47.1 7.7 65 61-148 56-121 (144)
300 3mv2_A Coatomer subunit alpha; 95.2 0.57 1.9E-05 44.7 15.2 114 43-172 110-241 (325)
301 3mkr_B Coatomer subunit alpha; 95.0 0.71 2.4E-05 44.0 15.5 113 45-170 100-230 (320)
302 4e6h_A MRNA 3'-END-processing 94.7 0.063 2.2E-06 57.5 8.2 111 50-183 437-552 (679)
303 4e6h_A MRNA 3'-END-processing 94.3 0.086 2.9E-06 56.5 8.1 95 50-167 346-463 (679)
304 2ko5_A Ring finger protein Z; 93.6 0.034 1.2E-06 42.4 2.3 46 200-247 26-72 (99)
305 3nw0_A Non-structural maintena 93.6 0.051 1.7E-06 50.2 4.1 46 201-246 179-227 (238)
306 2jun_A Midline-1; B-BOX, TRIM, 93.4 0.031 1.1E-06 44.1 2.0 31 201-231 2-35 (101)
307 3ffl_A Anaphase-promoting comp 93.3 0.16 5.3E-06 43.8 6.3 53 45-97 61-138 (167)
308 1zbp_A Hypothetical protein VP 93.0 0.33 1.1E-05 45.3 8.6 64 54-140 4-67 (273)
309 4gns_B Protein CSD3, chitin bi 92.1 0.24 8.3E-06 53.3 7.4 59 83-164 339-397 (754)
310 4gns_B Protein CSD3, chitin bi 90.6 0.21 7.2E-06 53.8 4.9 49 49-97 339-387 (754)
311 2uy1_A Cleavage stimulation fa 89.1 2 6.8E-05 43.9 10.8 126 48-175 214-357 (493)
312 4h7y_A Dual specificity protei 87.8 1.6 5.4E-05 36.9 7.3 103 48-174 14-130 (161)
313 2uy1_A Cleavage stimulation fa 87.3 3.3 0.00011 42.3 11.1 92 50-165 289-381 (493)
314 4b4t_R RPN7, 26S proteasome re 87.1 0.58 2E-05 47.0 5.2 95 50-167 134-237 (429)
315 3txn_A 26S proteasome regulato 86.5 0.99 3.4E-05 44.8 6.3 92 52-166 104-209 (394)
316 1zbp_A Hypothetical protein VP 82.8 1.1 3.7E-05 41.8 4.3 56 121-176 14-69 (273)
317 1ya0_A SMG-7 transcript varian 82.3 1.6 5.5E-05 44.7 5.9 61 121-181 169-229 (497)
318 4g26_A Pentatricopeptide repea 82.1 5.3 0.00018 40.8 9.8 89 53-166 111-203 (501)
319 1ya0_A SMG-7 transcript varian 80.1 3.5 0.00012 42.1 7.5 78 49-149 154-231 (497)
320 2ff4_A Probable regulatory pro 79.7 2.1 7.3E-05 42.2 5.6 62 48-132 172-233 (388)
321 3i2d_A E3 SUMO-protein ligase 78.8 1.4 4.8E-05 42.8 3.8 63 201-265 248-315 (371)
322 2w2u_A Hypothetical P60 katani 78.2 2.4 8.2E-05 31.9 4.2 35 42-76 14-48 (83)
323 2v6y_A AAA family ATPase, P60 75.5 3 0.0001 31.3 4.1 34 43-76 7-40 (83)
324 3mkq_B Coatomer subunit alpha; 75.4 11 0.00037 32.7 8.1 22 145-166 96-117 (177)
325 3kae_A CDC27, possible protein 75.3 8.1 0.00028 33.3 7.0 96 52-175 38-151 (242)
326 4fo9_A E3 SUMO-protein ligase 75.2 2.1 7E-05 41.5 3.8 62 201-264 214-280 (360)
327 3ax2_A Mitochondrial import re 75.1 3.1 0.0001 30.4 3.8 34 49-82 19-52 (73)
328 4h7y_A Dual specificity protei 72.0 6.6 0.00022 33.2 5.6 61 56-139 69-129 (161)
329 2v6x_A Vacuolar protein sortin 69.7 5.1 0.00017 30.1 4.2 36 41-76 7-42 (85)
330 4a5x_A MITD1, MIT domain-conta 68.9 34 0.0012 25.6 9.6 33 44-76 13-45 (86)
331 2cpt_A SKD1 protein, vacuolar 67.8 7.9 0.00027 31.1 5.1 35 42-76 13-47 (117)
332 4g26_A Pentatricopeptide repea 66.4 11 0.00039 38.3 7.4 84 60-167 83-169 (501)
333 1wfd_A Hypothetical protein 15 64.5 44 0.0015 25.3 10.2 36 41-76 9-44 (93)
334 2lri_C Autoimmune regulator; Z 64.5 6.9 0.00024 27.9 3.7 45 200-246 10-60 (66)
335 2cfu_A SDSA1; SDS-hydrolase, l 64.1 9 0.00031 40.6 6.2 51 47-97 449-499 (658)
336 1om2_A Protein (mitochondrial 62.9 4.8 0.00016 31.0 2.8 32 49-80 22-53 (95)
337 1weo_A Cellulose synthase, cat 60.5 6.8 0.00023 29.5 3.1 45 202-246 16-68 (93)
338 4b4t_P 26S proteasome regulato 60.0 28 0.00095 34.8 8.8 98 47-167 137-247 (445)
339 3mkq_A Coatomer beta'-subunit; 58.7 23 0.00079 37.6 8.5 26 48-73 682-707 (814)
340 2crb_A Nuclear receptor bindin 57.3 18 0.00062 27.5 5.0 32 44-75 12-43 (97)
341 3mkq_A Coatomer beta'-subunit; 57.1 15 0.00051 39.1 6.6 81 58-166 663-764 (814)
342 2vkj_A TM1634; membrane protei 55.3 16 0.00056 27.5 4.4 33 45-77 51-83 (106)
343 4fhn_B Nucleoporin NUP120; pro 54.0 12 0.0004 42.5 5.2 91 50-163 845-963 (1139)
344 4b4t_S RPN3, 26S proteasome re 51.5 54 0.0018 33.4 9.1 100 44-172 267-378 (523)
345 2cs3_A Protein C14ORF4, MY039 50.3 18 0.0006 26.6 3.8 36 199-234 12-51 (93)
346 2o35_A Hypothetical protein DU 50.0 5.5 0.00019 30.6 1.2 11 224-234 43-53 (105)
347 3fyb_A Protein of unknown func 49.8 5.6 0.00019 30.5 1.2 11 224-234 42-52 (104)
348 2ynq_A ESSB; membrane protein, 49.8 31 0.0011 29.1 5.9 89 48-164 9-99 (161)
349 2rpa_A Katanin P60 ATPase-cont 49.7 13 0.00046 27.4 3.2 30 47-76 12-41 (78)
350 1m3v_A FLIN4, fusion of the LI 48.2 9.2 0.00032 30.7 2.4 47 201-247 31-80 (122)
351 4b4t_S RPN3, 26S proteasome re 45.2 23 0.00079 36.1 5.2 58 121-178 248-310 (523)
352 4b4t_R RPN7, 26S proteasome re 44.6 28 0.00095 34.5 5.8 81 64-167 114-197 (429)
353 3spa_A Mtrpol, DNA-directed RN 42.5 83 0.0028 35.1 9.3 93 50-166 130-229 (1134)
354 2gmg_A Hypothetical protein PF 42.5 6 0.00021 30.9 0.3 29 213-246 66-94 (105)
355 2yhe_A SEC-alkyl sulfatase; hy 48.5 5.3 0.00018 42.5 0.0 51 47-97 461-511 (668)
356 2xjy_A Rhombotin-2; oncoprotei 42.4 14 0.00047 29.9 2.6 48 200-247 27-77 (131)
357 2oo2_A Hypothetical protein AF 42.2 35 0.0012 25.6 4.5 35 40-74 28-62 (86)
358 2pmr_A Uncharacterized protein 41.5 35 0.0012 25.7 4.4 34 41-74 33-66 (87)
359 1qsa_A Protein (soluble lytic 41.4 41 0.0014 35.2 6.6 85 58-166 263-347 (618)
360 1rut_X Flinc4, fusion protein 40.0 9.3 0.00032 33.3 1.3 48 200-247 30-80 (188)
361 3kae_A CDC27, possible protein 39.6 1.3E+02 0.0043 26.0 8.0 82 53-165 8-89 (242)
362 3kez_A Putative sugar binding 38.4 32 0.0011 34.4 5.2 71 82-166 118-224 (461)
363 3mkq_B Coatomer subunit alpha; 38.3 1.9E+02 0.0065 24.7 9.6 27 47-73 34-60 (177)
364 3ax2_A Mitochondrial import re 36.6 26 0.00088 25.5 2.9 36 143-178 22-57 (73)
365 3snx_A SUSD homolog, putative 36.4 94 0.0032 31.0 8.3 102 66-167 85-220 (460)
366 2ijq_A Hypothetical protein; s 35.6 89 0.0031 26.4 6.6 64 47-133 32-104 (161)
367 3mcx_A SUSD superfamily protei 34.8 44 0.0015 33.6 5.5 70 82-165 124-229 (477)
368 3myv_A SUSD superfamily protei 33.1 41 0.0014 33.6 4.9 70 82-165 112-217 (454)
369 2l5u_A Chromodomain-helicase-D 32.5 42 0.0014 23.2 3.4 44 199-244 8-57 (61)
370 2wpv_A GET4, UPF0363 protein Y 32.2 1.2E+02 0.004 28.7 7.6 115 48-164 34-160 (312)
371 2v6y_A AAA family ATPase, P60 31.9 55 0.0019 24.2 4.2 47 119-173 7-53 (83)
372 2w2u_A Hypothetical P60 katani 31.5 70 0.0024 23.7 4.7 47 119-173 15-61 (83)
373 2xqn_T Testin, TESS; metal-bin 31.3 30 0.001 27.5 3.0 46 200-247 28-74 (126)
374 2dl1_A Spartin; SPG20, MIT, st 30.3 63 0.0021 25.7 4.4 34 42-75 17-50 (116)
375 1wy6_A Hypothetical protein ST 30.1 99 0.0034 25.7 5.7 63 49-134 92-155 (172)
376 1wfd_A Hypothetical protein 15 29.2 77 0.0026 23.9 4.8 49 116-172 8-56 (93)
377 3t5x_A PCI domain-containing p 28.9 64 0.0022 28.3 4.9 37 45-81 12-48 (203)
378 1wil_A KIAA1045 protein; ring 27.3 66 0.0022 24.0 3.7 34 198-232 11-47 (89)
379 3lew_A SUSD-like carbohydrate 26.2 1E+02 0.0035 31.0 6.6 70 82-165 120-230 (495)
380 1x61_A Thyroid receptor intera 26.1 70 0.0024 22.3 3.9 34 201-234 32-66 (72)
381 2rgt_A Fusion of LIM/homeobox 25.8 54 0.0018 27.7 3.7 46 200-247 31-76 (169)
382 3lpz_A GET4 (YOR164C homolog); 25.0 3.3E+02 0.011 25.8 9.4 28 136-163 134-161 (336)
383 4gq2_M Nucleoporin NUP120; bet 24.8 1.5E+02 0.005 32.8 7.9 39 127-165 829-867 (950)
384 1dvp_A HRS, hepatocyte growth 24.5 76 0.0026 28.1 4.6 30 202-231 161-194 (220)
385 1z60_A TFIIH basal transcripti 24.5 65 0.0022 22.3 3.1 39 204-242 17-58 (59)
386 2jtn_A LIM domain-binding prot 24.4 44 0.0015 28.6 2.9 46 200-247 85-130 (182)
387 2fiy_A Protein FDHE homolog; F 24.2 31 0.0011 32.6 2.0 46 200-245 180-231 (309)
388 2jne_A Hypothetical protein YF 23.6 7.4 0.00025 29.8 -2.0 42 201-247 31-72 (101)
389 2crb_A Nuclear receptor bindin 23.6 51 0.0017 25.1 2.6 25 140-164 17-41 (97)
390 3o36_A Transcription intermedi 23.2 22 0.00074 30.8 0.6 44 202-245 4-51 (184)
391 1erd_A Pheromone ER-2; NMR {Eu 23.1 18 0.00063 21.6 0.1 16 218-233 10-25 (40)
392 1y02_A CARP2, FYVE-ring finger 22.9 7.5 0.00026 31.4 -2.2 45 202-246 19-67 (120)
393 3eab_A Spastin; spastin, MIT, 22.9 56 0.0019 24.6 2.8 33 43-75 12-47 (89)
394 3txn_A 26S proteasome regulato 22.9 1.9E+02 0.0064 28.3 7.4 97 48-167 20-168 (394)
395 2cup_A Skeletal muscle LIM-pro 22.6 37 0.0013 25.7 1.9 46 200-247 31-77 (101)
396 1f62_A Transcription factor WS 22.6 34 0.0012 22.5 1.4 41 204-244 2-49 (51)
397 3mjh_B Early endosome antigen 22.5 21 0.0007 21.8 0.2 13 203-215 6-18 (34)
398 3qnk_A Putative lipoprotein; a 22.4 39 0.0013 34.4 2.5 85 81-167 109-211 (517)
399 1upt_B Golgi autoantigen, golg 22.2 46 0.0016 23.0 2.0 26 446-471 23-48 (60)
400 3zyq_A Hepatocyte growth facto 22.1 1E+02 0.0035 27.5 5.0 30 202-231 164-197 (226)
401 2ymb_A MITD1, MIT domain-conta 21.8 19 0.00066 33.1 0.0 34 43-76 19-52 (257)
402 2jmo_A Parkin; IBR, E3 ligase, 21.0 14 0.00047 27.4 -1.0 16 219-234 55-70 (80)
403 3dza_A Uncharacterized putativ 20.9 80 0.0027 27.4 3.7 50 48-97 109-166 (191)
404 1joc_A EEA1, early endosomal a 20.9 30 0.001 28.0 1.0 30 202-231 69-102 (125)
405 3u5n_A E3 ubiquitin-protein li 20.9 24 0.00081 31.2 0.4 43 201-245 6-54 (207)
406 4b4t_P 26S proteasome regulato 20.6 1.5E+02 0.005 29.4 6.3 69 42-133 172-247 (445)
407 1wig_A KIAA1808 protein; LIM d 20.5 50 0.0017 23.4 2.1 33 200-232 29-63 (73)
408 4aqz_A PILQ, type IV pilus bio 20.1 3.2E+02 0.011 22.3 7.1 50 337-387 87-136 (138)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=99.98 E-value=1.8e-32 Score=254.29 Aligned_cols=174 Identities=14% Similarity=0.267 Sum_probs=151.5
Q ss_pred CCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCceeEEEEec------CCCCCcccceeEEEEEEeeecCCceEE
Q 011861 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIID------PTTGSVADFACEVEITECEPLPDGRFV 359 (476)
Q Consensus 288 ~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~v~~~~------~~~~~l~~iGt~~~I~~~~~~~dG~~~ 359 (476)
.+|+||++ |+|||+++||+||+++|++|+++|+++++.||++++. |..+++|+|||+|+|.++.++|||+++
T Consensus 8 ~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~i~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~l~dG~~~ 87 (209)
T 3m65_A 8 SIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLPNGTIR 87 (209)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECTTSCEE
T ss_pred ceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCcchhhheeEEEEEEEEEECCCCeEE
Confidence 59999997 9999999999999999999999999999999999983 334689999999999999999999999
Q ss_pred EEEEecceeEEeeeecCCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhcccC
Q 011861 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEVM 439 (476)
Q Consensus 360 V~v~G~~R~~I~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~il~~~~~ 439 (476)
|+++|.+||+|.++.+.+||+.|+|++++|++. ...+.+++.+.+.+.+.+|...++.++.+.. ..
T Consensus 88 v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~----~~~e~~al~~~l~~~~~~~~~~~~~~~~e~~-------~~--- 153 (209)
T 3m65_A 88 VLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDS----KDTEDEALMRTLLDHFDQYIKISKKISAETY-------AA--- 153 (209)
T ss_dssp EEEEEEEEEEEEEEEECSSSEEEEEEECCCC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEEecCCCC----CCHHHHHHHHHHHHHHHHHHHhCCCCCHHHH-------HH---
Confidence 999999999999999999999999999987532 2246788999999999999988776665321 11
Q ss_pred CCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCCC
Q 011861 440 MPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRE 475 (476)
Q Consensus 440 ~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~e 475 (476)
+...+||++|+|++|+++|++.++||+|||+.|+.+
T Consensus 154 ~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~ 189 (209)
T 3m65_A 154 VTDIEEPGRMADIVASHLPLKLKDKQDILETADVKD 189 (209)
T ss_dssp HHTCCCHHHHHHHHHHHSCCCHHHHHHHHTCCSHHH
T ss_pred HHccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHH
Confidence 224599999999999999999999999999999753
No 2
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.97 E-value=1.2e-31 Score=255.65 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=153.0
Q ss_pred CCCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCceeEEEEec------CCCCCcccceeEEEEEEeeecCCceE
Q 011861 287 DLMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIID------PTTGSVADFACEVEITECEPLPDGRF 358 (476)
Q Consensus 287 ~~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~v~~~~------~~~~~l~~iGt~~~I~~~~~~~dG~~ 358 (476)
..+|+||++ |+|||+++||+||+++|+.|+++|+++++.||++++. |..+++|+|||+|+|.++.++|||++
T Consensus 16 ~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~p~~~~l~~vGt~a~I~~~~~lpdG~~ 95 (252)
T 3ljc_A 16 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV 95 (252)
T ss_dssp CCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEEECCCBCCTTSCE
T ss_pred CceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCCCCccchhheeEEEEEEEEEECCCCeE
Confidence 359999998 9999999999999999999999999999999999983 34468999999999999999999999
Q ss_pred EEEEEecceeEEeeeecCCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccc
Q 011861 359 VLEIESRRRFRILRSWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVEV 438 (476)
Q Consensus 359 ~V~v~G~~R~~I~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~il~~~~ 438 (476)
+|+++|.+||+|.++.+.+||+.|+|+++++++. ...+.+++.+.+.+.+.+|...++.++.+ ...
T Consensus 96 ~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~----~~~e~~al~~~l~~~~~~~~~l~~~~~~e----------~~~ 161 (252)
T 3ljc_A 96 KVLVEGLQRARISALSDNGEHFSAKAEYLESPTI----DEREQEVLVRTAISQFEGYIKLNKKIPPE----------VLT 161 (252)
T ss_dssp EEEEEEEEEEECSEEEEETTEEEEECCCCCCCCS----CHHHHHHHHHHHHHHHHHHHHHHCSSCHH----------HHH
T ss_pred EEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCC----CChHHHHHHHHHHHHHHHHHHhcccCCHH----------HHH
Confidence 9999999999999999999999999999987532 23467889999999999999877666652 112
Q ss_pred CCCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCCC
Q 011861 439 MMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRE 475 (476)
Q Consensus 439 ~~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~e 475 (476)
.+...+||++|+|++|+++|++.++||+|||+.|+.+
T Consensus 162 ~~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~ 198 (252)
T 3ljc_A 162 SLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNE 198 (252)
T ss_dssp HTTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHH
T ss_pred HHHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHH
Confidence 2445699999999999999999999999999999753
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=99.97 E-value=7.1e-31 Score=243.76 Aligned_cols=175 Identities=20% Similarity=0.240 Sum_probs=145.5
Q ss_pred CCCcceee-cccCCCccCCCCCChhHHHHHHHHHhcCceeEEEEecCC--------CCCcccceeEEEEEEeeecCCceE
Q 011861 288 LMPLFVMD-VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDPT--------TGSVADFACEVEITECEPLPDGRF 358 (476)
Q Consensus 288 ~lPl~~l~-vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~v~~~~~~--------~~~l~~iGt~~~I~~~~~~~dG~~ 358 (476)
.+|+||+. |+|||+++||+||+++|++|+++|+++++.||++++... .+++|+|||+|+|.++.++|||++
T Consensus 3 ~lPl~PL~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~~glv~~~~~~~~~~~~~~~dl~~vGt~a~I~~~~~lpdG~~ 82 (210)
T 1zbo_A 3 EIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALL 82 (210)
T ss_dssp EEEEEEESSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTTCE
T ss_pred EeeEEecCeeecCCCceeeEECCHHHHHHHHHHHhcCCcEEEEEeCCCcccCcccccCchhceEEEEEEEEEEeCCCceE
Confidence 48999998 999999999999999999999999999999999998421 246999999999999999999999
Q ss_pred EEEEEecceeEEee-eecCCCeeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhcc
Q 011861 359 VLEIESRRRFRILR-SWDQDGYRVAEIEWVQDIHPEGVEDRADLQDLTNNAAEYARLWLRREKESARQDRRRLEKLLNVE 437 (476)
Q Consensus 359 ~V~v~G~~R~~I~~-~~~~~~~~~a~v~~l~d~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~il~~~ 437 (476)
+|+++|.+||+|.+ +.+.+||+.|+|++++|++.. +...+.+++.+.+++.+.+|...+. .+. . ..+
T Consensus 83 ~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~--~~~~e~~al~~~l~~~~~~~~~~~~-~~~--------~-~~l 150 (210)
T 1zbo_A 83 ELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPL--EVPPELARSASALGRLIARLQREGV-PPH--------I-MPM 150 (210)
T ss_dssp EEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCC--CCCGGGHHHHHHHHHHHHHHHHTTC-CTT--------T-CSB
T ss_pred EEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCC--CCcHHHHHHHHHHHHHHHHHHHhcc-ccc--------c-ccC
Confidence 99999999999965 668899999999999885321 1234678899999999988877650 000 0 001
Q ss_pred cCCCCCCChhhhHHHHHhcCCCChHHhHhhcccCCCCC
Q 011861 438 VMMPPSQDPERFSFWLATLSDRRPSERLELLRIRDTRE 475 (476)
Q Consensus 438 ~~~~~~~~p~~l~~~va~~l~l~~~~kq~LLe~~d~~e 475 (476)
......+||+.|+|++|+++|++.++||+|||+ |+.+
T Consensus 151 ~~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~ 187 (210)
T 1zbo_A 151 AAPFRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLD 187 (210)
T ss_dssp CSCCCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHH
T ss_pred CCcCCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHH
Confidence 114456899999999999999999999999999 8753
No 4
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.95 E-value=6.8e-28 Score=233.92 Aligned_cols=199 Identities=23% Similarity=0.355 Sum_probs=165.3
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|+.++..|+|++|+..|++|++.+|+++.+|.++|.+|..+|++ ++|+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 59 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-----------------------EQALA 59 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh-----hHHHH---------------------
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL-----QASLQ--------------------- 179 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~-----~~~~~--------------------- 179 (476)
++++|++++|++..+++.+|.++..+|+|++|+..|+++++++|+++.. ...+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999999999999999876321 11110
Q ss_pred ----------HHHHhhhhh----------------------------------hcc--cCCCCCCCCccccccccccccc
Q 011861 180 ----------NLERTTASL----------------------------------IGR--RIHGTPERTDDFDCTLCLKLLY 213 (476)
Q Consensus 180 ----------~~~~~~~~~----------------------------------~~~--~~~~~~~~~~~~~C~iC~~~~~ 213 (476)
..++++... ... ...........+.|+||+++|.
T Consensus 140 ~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~ 219 (281)
T 2c2l_A 140 HSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMR 219 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhc
Confidence 001111000 000 1123345667999999999999
Q ss_pred CcEEccCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 214 EPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 214 ~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
+||+++|||+||+.||..|+.. +..||.||.++. ...+.+|..|.++++.|+..
T Consensus 220 dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~--~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 220 EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT--QEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC--GGGCEECHHHHHHHHHHHTT
T ss_pred CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc--hhcCcccHHHHHHHHHHHHH
Confidence 9999999999999999999985 445999999884 35788999999999988643
No 5
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.88 E-value=1.6e-22 Score=170.76 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=93.1
Q ss_pred CCCcceee--cccCCCccCCCCCChhHHHHHHHHHhcCceeEEEEec------CCCCCcccceeEEEEEEeeecCCceEE
Q 011861 288 LMPLFVMD--VVIPCQRFPLHIFEPRYRLMVRRIMEGNHRMGMVIID------PTTGSVADFACEVEITECEPLPDGRFV 359 (476)
Q Consensus 288 ~lPl~~l~--vlfP~~~~pl~v~~~~~~~~v~~a~~~~~~~~v~~~~------~~~~~l~~iGt~~~I~~~~~~~dG~~~ 359 (476)
.+|+||++ |+|||+++||+|++++|++|+++|+++++.|+++++. +..+++|+|||+|+|.++.++|||+++
T Consensus 17 ~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~~i~lv~~k~~~~~~p~~~dl~~vGt~a~I~~~~~lpdG~~~ 96 (125)
T 2ane_A 17 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVK 96 (125)
T ss_dssp EEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEEEECTTSCEE
T ss_pred eEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCccCCCccchhccEEEEEEEEEeeCCCCcEE
Confidence 49999997 9999999999999999999999999999899999883 233579999999999999999999999
Q ss_pred EEEEecceeEEeeeecCCCeeEEEEEEec
Q 011861 360 LEIESRRRFRILRSWDQDGYRVAEIEWVQ 388 (476)
Q Consensus 360 V~v~G~~R~~I~~~~~~~~~~~a~v~~l~ 388 (476)
|+++|.+||+|.++.+.+||+.|+|++++
T Consensus 97 ilv~G~~R~rI~~~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 97 VLVEGLQRARISALSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred EEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence 99999999999999899999999999863
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=2.2e-19 Score=152.36 Aligned_cols=116 Identities=25% Similarity=0.430 Sum_probs=111.4
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.+..+..+.++|+.+|++|+|++|+..|++|++++|+++.+|.++|.+|.++|++ ++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----------------------~~ 65 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-----------------------QR 65 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-----------------------HH
Confidence 3566889999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|+.++++|++++|++..+|+.+|.++..+|+|++|+..|+++++++|++..+...+.++
T Consensus 66 A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988877765
No 7
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.73 E-value=2.2e-18 Score=150.67 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=117.3
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC-------Ccc-----cccchhHHHHHHHhhhccCCCCCcccC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG-------DPI-----VLGNRSSAYIRISQFLKHRPPSASEYR 109 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (476)
.....+..++..|+.+|..|+|++|+..|++||+++|+ +.. +|.|+|.++.++|+|
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~------------ 73 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF------------ 73 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH------------
Confidence 34567889999999999999999999999999999999 433 999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhc-------cccchHHH----HHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 110 PLNGLDPTTHAELALKDAEKLLNL-------QSNSMKSH----LLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 110 ~~~~~~~~~~~~~a~~~~~~al~l-------~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
++|+..|++||++ +|++.++| +++|.++..+|+|++|+..|+++++++|++..+...+
T Consensus 74 -----------~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 74 -----------DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp -----------HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred -----------HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhc
Q 011861 179 QNLERTTASLIG 190 (476)
Q Consensus 179 ~~~~~~~~~~~~ 190 (476)
..+++.+.....
T Consensus 143 ~~~~~~~~~~~~ 154 (159)
T 2hr2_A 143 ERMMEVAIDRIA 154 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888776543
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=3.3e-17 Score=144.32 Aligned_cols=127 Identities=22% Similarity=0.260 Sum_probs=116.6
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc------------------CCCCcccccchhHHHHHHHhhhccCC
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI------------------KPGDPIVLGNRSSAYIRISQFLKHRP 102 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~~~~ 102 (476)
.+....+..+...|+.+|+.|+|++|+..|++|+.+ +|.+..+|.++|.+|.++|+|
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----- 79 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL----- 79 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH-----
Confidence 345677899999999999999999999999999999 777779999999999999999
Q ss_pred CCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc-hhhHHHHHH
Q 011861 103 PSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN-PLQASLQNL 181 (476)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~-~~~~~~~~~ 181 (476)
++|+.++++|++++|+++++|+++|.+|..+|+|++|+.+|+++++++|+++ .+...+..+
T Consensus 80 ------------------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 80 ------------------HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp ------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 778888888
Q ss_pred HHhhhhhhc
Q 011861 182 ERTTASLIG 190 (476)
Q Consensus 182 ~~~~~~~~~ 190 (476)
.+.+.....
T Consensus 142 ~~~~~~~~~ 150 (162)
T 3rkv_A 142 TERRAEKKA 150 (162)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 887776554
No 9
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=1.1e-16 Score=135.59 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=103.7
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
....+.++.+.|+.+|++|+|++|+.+|++|++++|+++.+|.++|.+|..+|+| ++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-----------------------~~ 60 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-----------------------AE 60 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-----------------------HH
Confidence 4456788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccch-------HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSM-------KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 123 a~~~~~~al~l~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
|+.++++|++++|++. ++|+++|.++..+|+|++|+..|+++++.+|+ ++....+.+++
T Consensus 61 A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le 126 (127)
T 4gcn_A 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence 9999999999998764 58899999999999999999999999998875 44444444443
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-16 Score=133.66 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=111.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-----------------------PEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 45788999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC------CCCchhhHHHHHHHHhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQNLERTT 185 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~------p~~~~~~~~~~~~~~~~ 185 (476)
..++++++++|++..+|+.+|.++..+|+|++|+..|+++++++ |.+..+...+..+.+.+
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 88888888887776543
No 11
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=1.2e-15 Score=134.44 Aligned_cols=126 Identities=25% Similarity=0.306 Sum_probs=117.9
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
+....+..+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|++ +
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~ 62 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH-----------------------E 62 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-----------------------H
Confidence 44567889999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch--hhHHHHHHHHhhhhhhc
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP--LQASLQNLERTTASLIG 190 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~--~~~~~~~~~~~~~~~~~ 190 (476)
+|+..++++++++|++..+|+.+|.++..+|+|++|+..|+++++++|++.. ....+..+++.+.+...
T Consensus 63 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998 66777777777776654
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=1e-15 Score=133.94 Aligned_cols=107 Identities=12% Similarity=-0.011 Sum_probs=103.0
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.+..+..+...|..+++.|+|++|+..|.+++.++|+++.+|.++|.+|..+|+| ++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-----------------------~~ 88 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-----------------------QQ 88 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-----------------------HH
Confidence 3456788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
|+..|++|++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++
T Consensus 89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999998765
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=2.5e-15 Score=130.87 Aligned_cols=124 Identities=8% Similarity=0.052 Sum_probs=114.6
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
......+...|..++..|+|++|+..|.+++.++|+++.+|.++|.+|..+|++ ++|
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A 74 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-----------------------DLA 74 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-----------------------HHH
Confidence 345778889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+.+.+....+
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887777777777766554
No 14
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=3.5e-15 Score=128.45 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=115.6
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
......+...|..++..|+|++|+..|.+++..+|+++.+|.++|.+|..+|++ ++|
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A 71 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-----------------------EQA 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-----------------------HHH
Confidence 445678889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...+....+
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888877777777766543
No 15
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=7.6e-15 Score=133.50 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=123.9
Q ss_pred eeeecccCccccccCCCCCCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----------------ccc
Q 011861 21 VGIDDVDDYIWANEGEGSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------IVL 84 (476)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----------------~~~ 84 (476)
.......+|....+.......+....+..+...|+.++..|+|++|+..|.+++++.|+++ .++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455555555544444456677888999999999999999999999999999999998 899
Q ss_pred cchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 85 GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
.++|.+|..+|++ ++|+..++++++++|++..+++.+|.++..+|+|++|+..|+++
T Consensus 92 ~~la~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 92 LNLATCYNKNKDY-----------------------PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCH-----------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhHHHHHHHHhhhhhhc
Q 011861 165 LQVDPFSNPLQASLQNLERTTASLIG 190 (476)
Q Consensus 165 l~l~p~~~~~~~~~~~~~~~~~~~~~ 190 (476)
++++|++..+...+..+...+.....
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777765544
No 16
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=3.1e-15 Score=130.41 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=105.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....++..|+.|++.|+|++|+..|.++++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-----------------------~~A~ 85 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT-----------------------DKAV 85 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch-----------------------HHHH
Confidence 44556778899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHH-HhcccccCCCCchhhHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA-ILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..|+++++++|+++.+|+.+|.+|...|++++|... ++++++++|+++.+......+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 999999999999999999999999999999887765 589999999999887665554
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=2.6e-14 Score=119.83 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=93.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+...|..+++.|++++|+..|.++++.+|+++.+|+++|.++..+|++ ++|+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~~ 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-----------------------GLAIIAL 74 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 34788899999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
++|++++|++..+++.+|.++...|++++|+..|+++++++|.+..
T Consensus 75 ~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999999999999998754
No 18
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.50 E-value=4.6e-14 Score=145.96 Aligned_cols=124 Identities=15% Similarity=0.290 Sum_probs=112.0
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---------------cccccchhHHHHHHHhhhccCCCCCc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSAS 106 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 106 (476)
.....+..+...|+.+++.|+|++|+..|.+|++++|++ ..+|.++|.+|+++|+|
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~--------- 333 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY--------- 333 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH---------
Confidence 445678899999999999999999999999999999999 59999999999999999
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 107 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
++|+..|++|++++|++.++|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+.
T Consensus 334 --------------~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 334 --------------TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp --------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888887776665
Q ss_pred hh
Q 011861 187 SL 188 (476)
Q Consensus 187 ~~ 188 (476)
..
T Consensus 400 ~~ 401 (457)
T 1kt0_A 400 EH 401 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 19
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=4.1e-14 Score=119.85 Aligned_cols=120 Identities=24% Similarity=0.377 Sum_probs=110.6
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|+|++|+..|.+++.++|+++.++.++|.+|..+|++ ++|+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 63 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-----------------------EQAL 63 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 45788999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC-----CchhhHHHHHHHHhhhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF-----SNPLQASLQNLERTTAS 187 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~-----~~~~~~~~~~~~~~~~~ 187 (476)
..++++++++|+++.+++.+|.++..+|++++|+..|.++++++|+ +..+...+..+++....
T Consensus 64 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 64 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 66666666666655433
No 20
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=1.4e-13 Score=112.35 Aligned_cols=115 Identities=31% Similarity=0.482 Sum_probs=108.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|+|++|+..|.+++..+|+++.++.++|.+|...|++ ++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 59 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-----------------------QKAYE 59 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
.++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...+..+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999888777766643
No 21
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.48 E-value=5.9e-14 Score=122.29 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=100.4
Q ss_pred HhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccch
Q 011861 59 RESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSM 138 (476)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 138 (476)
+.+.|++|+..|.++++++|+++.+|.++|.++..++++- -|..+-.+.++|+..|++|++++|++.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~-------------~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH-------------SISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-------------CHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc-------------hhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 4568999999999999999999999999999999999870 000001122699999999999999999
Q ss_pred HHHHHHHHHHHhhh-----------hHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 139 KSHLLKANALILLE-----------RYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 139 ~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
.+|+.+|.+|..+| +|++|+..|+++++++|++...+..++.+.+.-+-.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~ 141 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH 141 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhcc
Confidence 99999999999875 999999999999999999999988888887776544
No 22
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.48 E-value=1e-13 Score=137.45 Aligned_cols=123 Identities=17% Similarity=0.269 Sum_probs=113.8
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---------------cccccchhHHHHHHHhhhccCCCCCc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---------------PIVLGNRSSAYIRISQFLKHRPPSAS 106 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 106 (476)
.....+..+...|+.++..|+|++|+..|.+|++++|++ ..+|.++|.+|.++|+|
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~--------- 212 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF--------- 212 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH---------
Confidence 455678899999999999999999999999999999999 59999999999999999
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 107 EYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
++|+..|++|++++|++..+|+++|.+|..+|+|++|+..|+++++++|++..+...+..+...+.
T Consensus 213 --------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 213 --------------SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp --------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877766655554
Q ss_pred h
Q 011861 187 S 187 (476)
Q Consensus 187 ~ 187 (476)
.
T Consensus 279 ~ 279 (336)
T 1p5q_A 279 R 279 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.46 E-value=1.1e-13 Score=139.25 Aligned_cols=125 Identities=20% Similarity=0.282 Sum_probs=116.0
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhc----------------cCCCCcccccchhHHHHHHHhhhccCCCCC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN----------------IKPGDPIVLGNRSSAYIRISQFLKHRPPSA 105 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~ 105 (476)
.....+..+...|+.+++.|+|++|+..|++|++ ++|.+..+|.++|.+|+++|+|
T Consensus 218 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~-------- 289 (370)
T 1ihg_A 218 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW-------- 289 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH--------
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH--------
Confidence 3445677899999999999999999999999999 7888899999999999999999
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 106 SEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
++|+..+++|++++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+.+.+
T Consensus 290 ---------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 290 ---------------QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp ---------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888887776
Q ss_pred hhhh
Q 011861 186 ASLI 189 (476)
Q Consensus 186 ~~~~ 189 (476)
....
T Consensus 355 ~~~~ 358 (370)
T 1ihg_A 355 KAQK 358 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 24
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=115.24 Aligned_cols=120 Identities=26% Similarity=0.397 Sum_probs=111.4
Q ss_pred CchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
.........++...|..++..|+|++|+..|.++++.+|++..++.++|.+|...|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~---------------------- 66 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF---------------------- 66 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH----------------------
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH----------------------
Confidence 3445566889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+.
T Consensus 67 -~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 67 -QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888776666554
No 25
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.45 E-value=7.7e-14 Score=128.25 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=107.9
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccc----------------hhHHHHHHHhhhccCCCCCcccC
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGN----------------RSSAYIRISQFLKHRPPSASEYR 109 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~~~~~~~~~~~ 109 (476)
.+..+..+|..++..|+|++|+..|.++++++|+++.+|+. +|.+|..+|++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------ 70 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY------------ 70 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH------------
Confidence 46778999999999999999999999999999999999999 99999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 110 PLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 110 ~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|+..++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...+..+
T Consensus 71 -----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 71 -----------DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp -----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988776654
No 26
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=116.03 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=110.2
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
....+..+...|..++..|+|++|+..|.++++++|++ ..++.++|.+|..+|++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------- 81 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY---------------------- 81 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH----------------------
Confidence 34568889999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 82 -~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 82 -DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp -HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887776664
No 27
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.43 E-value=1e-13 Score=108.49 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=64.5
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCchHHh
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYA 272 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~~~~ 272 (476)
....+.+.|+||+++|.+||+++|||+||+.||..|+.....||.|+..+.. ..+..|..|+++++.|......
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~--~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE--SMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh--HhcchHHHHHHHHHHHHHHhhh
Confidence 3456789999999999999999999999999999999987889999998843 5788999999999988655443
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=3.6e-13 Score=124.57 Aligned_cols=117 Identities=16% Similarity=0.226 Sum_probs=108.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|++++|+..|.++++.+|+++.++.++|.++.++|++ ++|+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 59 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV-----------------------NPAL 59 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34567889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhh-----------hhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILL-----------ERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
..++++++++|+++.+++.+|.++... |++++|+..|+++++++|++..+...+..+-..
T Consensus 60 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 60 ENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999999999999887766555433
No 29
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.43 E-value=8.9e-14 Score=138.01 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=97.8
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc-----------------ccccchhHHHHHHHhhhccCCCC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-----------------IVLGNRSSAYIRISQFLKHRPPS 104 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~~~~~~ 104 (476)
.....+..+...|+.++..|+|++|+..|.+|+.+.|++. .+|.++|.+|.++|+|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~------- 246 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY------- 246 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC-------
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH-------
Confidence 4566788999999999999999999999999999999887 4899999999999999
Q ss_pred CcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 105 ASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
++|+..|+++++++|++.++|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...
T Consensus 247 ----------------~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 247 ----------------DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp ----------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred ----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877776443
Q ss_pred h
Q 011861 185 T 185 (476)
Q Consensus 185 ~ 185 (476)
.
T Consensus 311 ~ 311 (338)
T 2if4_A 311 E 311 (338)
T ss_dssp -
T ss_pred H
Confidence 3
No 30
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.42 E-value=8.5e-13 Score=109.49 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=112.3
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.....+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|...|++ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~ 63 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY-----------------------A 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch-----------------------H
Confidence 45567888999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
+|+..+.++++++|++..+++.+|.++...|++++|+..|+++++++|.+..+...+..+...+
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988777666665443
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=3.3e-13 Score=146.73 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=80.8
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
+..+.++...|+.+.++|+|++|+..|.+|++++|+++.+|.++|.+|.++|++ ++|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~-----------------------~eA 62 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-----------------------QEA 62 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 345666777777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+..|++|++++|++..+|+++|.+|..+|++++|+..|+++++++|++..+...+..
T Consensus 63 ~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 63 LMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776666554433
No 32
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=9.9e-13 Score=114.51 Aligned_cols=119 Identities=25% Similarity=0.385 Sum_probs=110.4
Q ss_pred CchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
+......+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.++..+|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~---------------------- 63 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------- 63 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------------------
Confidence 3455677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|+..+.++++++|++..+++.+|.++..+|++++|+..|.++++++|.+..+...+..+
T Consensus 64 -~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 64 -GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876544443
No 33
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.40 E-value=7.1e-13 Score=110.86 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=105.1
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+...|..++..|+|++|+..|.++++.+|+++ .+++.+|.+|...|++ ++|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~ 60 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-----------------------QLAEA 60 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 467889999999999999999999999999998 7999999999999999 99999
Q ss_pred HHHHHhhccccc---hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 126 DAEKLLNLQSNS---MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 126 ~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
.++++++.+|++ +.+++.+|.++..+|++++|+..|+++++.+|++..+......+.+.
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999 88999999999999999999999999999999998877766666543
No 34
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=9e-14 Score=121.08 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=98.5
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
.|..+..+|++++||..|.+++..+|+++..++++|.+|+++|+| ++|+..++++++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~-----------------------~~A~~~~~~al~ 59 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY-----------------------DLAKKYICTYIN 59 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 367778899999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 133 LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+-
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666553
No 35
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=8.9e-13 Score=109.55 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=109.5
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|+|++|+..|.++++.+|.++.++.++|.+|...|++ ++|+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 59 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-----------------------NKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc-------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 126 DAEKLLNLQSNS-------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 126 ~~~~al~l~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
.+.++++++|++ ..+++.+|.++...|++++|+..|+++++++| ++.....+..+.+.+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999987 89999999999999999999999999999998 577777777776666543
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.40 E-value=1.7e-13 Score=110.52 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
....+.+.|+||+++|.+||+++|||+||+.||..|+.....||.|+.++.. .++.+|..|+++++.|...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~--~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE--SMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT--TSSEECHHHHHHHHHHHHT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh--hhceECHHHHHHHHHHHHH
Confidence 3457799999999999999999999999999999999987889999998843 6788999999999888644
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=115.45 Aligned_cols=73 Identities=33% Similarity=0.681 Sum_probs=63.5
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhhhcC-CCCcccccccccCCCCcccchhHHHHHHHhCchHHhhh
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAER 274 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~~~~~~ 274 (476)
+.+.|+||++.+.+|++++|||+||..||..|+... ..||.||..+.. ...+..|..+.++++.++|+...+|
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~n~~l~~~i~~~~p~~~~~R 124 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR-SYAMQVNQPLQTVLNQLFPGYGNGR 124 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT-TCCCCCCHHHHHHHHHHSTTTTTTC
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC-CCCCCCCHHHHHHHHHHcccccccC
Confidence 467899999999999999999999999999999854 479999999853 2568899999999999999876543
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=3.3e-13 Score=103.98 Aligned_cols=71 Identities=24% Similarity=0.475 Sum_probs=61.1
Q ss_pred CCCCCcccccccccccccCcEEccCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHHhCc
Q 011861 196 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~ 268 (476)
.....+.+.|+||++.+.+|+.++|||+||+.||.+|+.. ...||.||..+.. ..+..|..+.+++++|..
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~--~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH--AGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS--CCCEECTTTHHHHHHHHH
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh--hhCccCHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999986 6679999998743 567789999999987753
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=7.6e-13 Score=133.50 Aligned_cols=116 Identities=10% Similarity=-0.058 Sum_probs=82.1
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHh-hhccCCCCCcccCCCCCCCCcchHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
...+..+...|..+...|+|++|+..|+++|+++|+++.+|.+||.++..+|+ + ++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~-----------------------~e 150 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL-----------------------HE 150 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------HH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCH-----------------------HH
Confidence 34455666677777777777777777777777777777777777777777775 7 77
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
|+..+++|++++|+++.+|+.+|.++..+|+|++|+..|+++++++|.+..++..+..+-
T Consensus 151 Al~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777766655544433
No 40
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=1.2e-12 Score=142.39 Aligned_cols=114 Identities=13% Similarity=0.067 Sum_probs=108.0
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..+++.|++++|+..|.+|++++|+++.+|.++|.+|..+|++ ++|++
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~-----------------------~~A~~ 98 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV-----------------------QGALQ 98 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
.|++|++++|++..+|+++|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus 99 ~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 99 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 999999999999999999999999999999999999999999999998877665543
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.35 E-value=7e-13 Score=106.43 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=62.8
Q ss_pred CCCCcccccccccccccCcEEccCC-CcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cg-h~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
....+++.|+||+++|.+||+++|| |+||+.||.+|+.....||.||.++.. ..+.+|..|+++++.|...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~--~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM--DQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT--TTSEECHHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh--hhceEcHHHHHHHHHHHHH
Confidence 3456789999999999999999999 999999999999987889999998843 6788999999999888643
No 42
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=6.3e-12 Score=115.33 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=92.1
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
.|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..|+++++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE-----------------------KDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccchHHHHHHHHHHHh-----------------------------------hhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 133 LQSNSMKSHLLKANALIL-----------------------------------LERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~-----------------------------------~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
++|+++.+++.+|.+|+. +|+|++|+..|+++++++|++. ....
T Consensus 117 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~ 195 (208)
T 3urz_A 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKT 195 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHH
Confidence 999999988888877643 3457889999999999988643 3334
Q ss_pred HHHH
Q 011861 178 LQNL 181 (476)
Q Consensus 178 ~~~~ 181 (476)
+..+
T Consensus 196 l~~i 199 (208)
T 3urz_A 196 LDKI 199 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=3.6e-12 Score=117.76 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=106.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHH-----------HhhhccCCCCCcccCCCCC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-----------SQFLKHRPPSASEYRPLNG 113 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 113 (476)
..+..+...|..++..|++++|+..|.++++++|+++.++.++|.+|..+ |++
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~---------------- 100 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL---------------- 100 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH----------------
Confidence 34677889999999999999999999999999999999999999999999 999
Q ss_pred CCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++ ++..+...+..+-
T Consensus 101 -------~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 101 -------EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp -------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7777766555543
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=3.2e-12 Score=118.28 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=102.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCC-CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKP-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
...+...|..++..|+|++|+..|.++++++| .+..+++++|.+|..+|++ ++|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 63 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY-----------------------KEAAD 63 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH-----------------------HHHHH
Confidence 47889999999999999999999999999999 9999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
.++++++++|++..+++.+|.++..+|+|++|+..|+++++++|++....
T Consensus 64 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 113 (228)
T 4i17_A 64 YFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE 113 (228)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 99999999999999999999999999999999999999999999998553
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=1.6e-12 Score=131.05 Aligned_cols=117 Identities=9% Similarity=-0.017 Sum_probs=110.0
Q ss_pred hhHHHHHHhhHHHHHhcc-HHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 45 THVFDLVQKGNRAFRESN-FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~-~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
..+..+..+|..+...|+ |++|+..|.+|++++|+++.+|.+||.++..+|++ ++|
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~-----------------------~eA 185 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP-----------------------SQE 185 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----------------------TTH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 345677889999999996 99999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
+..|++|++++|++..+|+.+|.++..+|+|++|+..|+++++++|.+..++..+..+-..
T Consensus 186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887777444
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.32 E-value=5.4e-13 Score=110.92 Aligned_cols=82 Identities=34% Similarity=0.788 Sum_probs=67.9
Q ss_pred CCCcccccccccccccCcEEccCCCcccHhhHHHhhhc-CCCCccccccccc-----CCCCcccchhHHHHHHHhCchHH
Q 011861 198 ERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFI-----TPRTCAVSVTLNSIIQKNFPEEY 271 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~-----~~~~~~~n~~l~~~~~~~~~~~~ 271 (476)
...+++.|+||++.+.+|+.++|||+||..||..|+.. ...||.||..+.. ...+..+|..+..++++++|.+.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~ 90 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPREC 90 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHH
Confidence 44568899999999999999999999999999999976 5679999998742 11456788999999999999998
Q ss_pred hhhhhcch
Q 011861 272 AERKSEHD 279 (476)
Q Consensus 272 ~~~~~~~~ 279 (476)
..+....+
T Consensus 91 ~~r~~~~e 98 (115)
T 3l11_A 91 KLRASGQE 98 (115)
T ss_dssp HHHHHC--
T ss_pred HHHHhhhh
Confidence 87765543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=113.94 Aligned_cols=73 Identities=32% Similarity=0.642 Sum_probs=63.8
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhhhcCC-CCcccccccccCCCCcccchhHHHHHHHhCchHHhhh
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAER 274 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~-~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~~~~~~ 274 (476)
+.+.|+||++.+.+|++++|||+||..||..|+.... .||.||..+... ..+..|..+.++++.++|+...+|
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~l~~n~~l~~lv~~~~p~~~~~R 150 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN-YIMIPNEILQTLLDLFFPGYSKGR 150 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT-CCCCBCHHHHHHHHHHSTTTTTTC
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC-CCCCCCHHHHHHHHHHhhHhhccC
Confidence 4679999999999999999999999999999998654 799999998532 378899999999999999876654
No 48
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.31 E-value=1.7e-12 Score=104.83 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=97.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|+|++|+..|.++++++|++..++.++|.+|..+|++ ++|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 62 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-----------------------EEAVDC 62 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 344677899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhcccc--chHHHHHHHHHHHhh-hhHHHHHHHHhcccccCCCCc
Q 011861 127 AEKLLNLQSN--SMKSHLLKANALILL-ERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 127 ~~~al~l~p~--~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~l~p~~~ 172 (476)
++++++++|+ +..+++.+|.++..+ |++++|+..+++++..+|.+.
T Consensus 63 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 63 YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999 999999999999999 999999999999999999764
No 49
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=3.8e-13 Score=111.49 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=88.2
Q ss_pred HhccHHHHHHHHHHHhcc---CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 59 RESNFEEAISNYSRANNI---KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 59 ~~~~~~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
..|+|++|+..|.+++++ +|+++.++.++|.+|..+|++ ++|+..++++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY-----------------------RKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCC
Confidence 368999999999999999 699999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
+++.+++.+|.++..+|++++|+..|+++++.+|+++.+.....
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999987655433
No 50
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=1e-11 Score=102.01 Aligned_cols=113 Identities=23% Similarity=0.346 Sum_probs=106.5
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|++++|+..|.++++.+|++..++..+|.++...|++ ++|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~~ 65 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 567888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++++++.+|++..+++.+|.++...|++++|+..|+++++++|.+..+...+..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777666553
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=5.9e-12 Score=116.46 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=107.4
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc-------ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
....+...|..++..|+|++|+..|.++++++|+++ .+|.++|.++..+|++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~--------------------- 133 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI--------------------- 133 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH---------------------
Confidence 456788899999999999999999999999999998 6699999999999999
Q ss_pred hHHHHHHHHHHHhhcccc--chHHHHHHHHHHHhhhhH---------------------------HHHHHHHhcccccCC
Q 011861 119 HAELALKDAEKLLNLQSN--SMKSHLLKANALILLERY---------------------------DMARDAILSGLQVDP 169 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~---------------------------~~A~~~~~~~l~l~p 169 (476)
++|+..++++++++|+ +..+++.+|.++...|+. ++|+..|+++++++|
T Consensus 134 --~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 134 --EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp --HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999 999999999999999988 999999999999999
Q ss_pred CCchhhHHHHHHHHh
Q 011861 170 FSNPLQASLQNLERT 184 (476)
Q Consensus 170 ~~~~~~~~~~~~~~~ 184 (476)
++..+...+..++..
T Consensus 212 ~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 212 NRTEIKQMQDQVKAM 226 (228)
T ss_dssp TCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999988888777654
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=8.2e-12 Score=111.32 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=99.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+.-+...|+.++.+|+|++|+..|+++++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------------~~a~~ 60 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP-----------------------NDAIE 60 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 3566888999999999999999999999999999999999999999999999 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.+.+++..+|++..++..+|.++...++++.|...+.++++++|.+..+...+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888887766655444
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=2e-12 Score=115.32 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=59.2
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+...|..++..++++.|+..+.++++++|++..++..+|.+|..+|++ ++|+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~ 131 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-----------------------DKAIEAYE 131 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-----------------------hhHHHHHH
Confidence 3444555555555555555556666655665556666666666666666 66666666
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 6666666666666666666666666666666666666655543
No 54
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=1.8e-12 Score=134.70 Aligned_cols=116 Identities=26% Similarity=0.420 Sum_probs=108.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|+.++..|+|++|+..|++|++++|+++.+|.++|.+|.++|++ ++|+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 60 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-----------------------GYAL 60 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHH
Confidence 44666778899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
+.+++|++++|+++.+++.+|.+|..+|+|++|+..|+++++++|++..+...+..+..
T Consensus 61 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988877766633
No 55
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=101.26 Aligned_cols=71 Identities=20% Similarity=0.565 Sum_probs=59.8
Q ss_pred CCCCcccccccccccccCcEEcc-CCCcccHhhHHHhhhc--CCCCcccccccccCCCCcccchhHHHHHHHhCc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDR--GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFP 268 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~-cgh~fC~~Cl~~~~~~--~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~ 268 (476)
....+++.|+||++.+.+|++++ |||+||..||..|+.. ...||.||..+. ....+..|..+.++++.+..
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~-~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV-SPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC-CTTSCEECHHHHHHHHHHHH
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC-CccccCcCHHHHHHHHHHHH
Confidence 34567899999999999999999 9999999999999863 357999999863 23577889999999988754
No 56
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.1e-12 Score=112.68 Aligned_cols=74 Identities=27% Similarity=0.693 Sum_probs=55.1
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCchHHhhhh
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYAERK 275 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~ 275 (476)
+++.|+||++.+.+|++++|||+||..||..|+.....||.||..+...+.++..+..+..++.. ++.+..++.
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~-l~~~~~~rr 125 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMVNN-LSSEVKERR 125 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHHTT-SCHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHHHH-hhHHHHHHH
Confidence 46789999999999999999999999999999998889999999884322233334444444433 455554443
No 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=4.2e-12 Score=104.25 Aligned_cols=74 Identities=26% Similarity=0.597 Sum_probs=63.0
Q ss_pred CcccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccccCC--CCcccchhHHHHHHHhCchHHhh
Q 011861 200 TDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITP--RTCAVSVTLNSIIQKNFPEEYAE 273 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~--~~~~~n~~l~~~~~~~~~~~~~~ 273 (476)
.+++.|+||++.+.+|+.+ +|||+||..|+..|+..+..||.||..+.... ..+..|..+.++++.+++.....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 89 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKN 89 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHH
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHH
Confidence 4588999999999999997 99999999999999998889999999874321 25678899999999999865533
No 58
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.1e-12 Score=103.75 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=90.2
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 59 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-----------------------TQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 126 DAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 126 ~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
.++++++++|++ ..+++.+|.++..+|+++.|+..+.+.
T Consensus 60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 999999999999 899999999999999998888776654
No 59
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=2.2e-11 Score=108.06 Aligned_cols=117 Identities=13% Similarity=0.190 Sum_probs=105.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHH-HHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSA-YIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
....+...|..++..|+|++|+..|.++++++|+++.++.++|.+ |...|++.. ++|+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~---------------------~~A~ 101 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT---------------------AQTR 101 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC---------------------HHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch---------------------HHHH
Confidence 456788999999999999999999999999999999999999999 888888411 8999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
..++++++++|++..+++.+|.++...|++++|+..|.++++++|.+......+..+.+
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876655555544
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=9.8e-12 Score=110.13 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=61.4
Q ss_pred CCCCCcccccccccccccCcEEccCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHHhC
Q 011861 196 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 267 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~ 267 (476)
....++.+.|+||+++|.+||+++|||+||+.||..|+.. +..||.|+.++.. .++.+|..|+++++.|.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~--~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ--DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG--GGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh--hhCcchHHHHHHHHHHH
Confidence 3455789999999999999999999999999999999985 4569999998843 57889999999998875
No 61
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=2.1e-11 Score=132.30 Aligned_cols=112 Identities=11% Similarity=-0.028 Sum_probs=67.9
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++ ++|+
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 487 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY-----------------------DSAT 487 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH-----------------------HHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34455666666666666666666666666666666666666666666666666 6666
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+.|++|++++|+++.+|+.+|.++..+|+|++ +..|+++++++|++..+...+..
T Consensus 488 ~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 488 KHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 66666666666666666666666666666655 55566666555555555444433
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=4.8e-11 Score=108.72 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=98.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~ 93 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY-----------------------DLAIKD 93 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 568889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccch----------------HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 127 AEKLLNLQSNSM----------------KSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 127 ~~~al~l~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+++++++.|++. .+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999877765 99999999999999999999999999999997643
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=9.9e-11 Score=110.70 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=104.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..+..++..|..++..|+|++|+..|.++++.+|++ +.+++.+|.+|+++|+| +
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~-----------------------~ 69 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY-----------------------L 69 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH-----------------------H
Confidence 457789999999999999999999999999999999 89999999999999999 9
Q ss_pred HHHHHHHHHhhcccc---chHHHHHHHHHHHh--------hhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 122 LALKDAEKLLNLQSN---SMKSHLLKANALIL--------LERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 122 ~a~~~~~~al~l~p~---~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+|+..++++++++|+ ...+++.+|.++.. .|++++|+..|+++++.+|++..+......
T Consensus 70 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 139 (261)
T 3qky_A 70 LAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK 139 (261)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH
Confidence 999999999999885 46799999999999 999999999999999999999877655433
No 64
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=99.18 Aligned_cols=65 Identities=17% Similarity=0.514 Sum_probs=57.4
Q ss_pred cccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhC
Q 011861 201 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 267 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~ 267 (476)
+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+.. .++..|..+.++++.+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~--~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE--PDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG--GGCEECHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh--hhCCcCHHHHHHHHHHH
Confidence 467999999999999998 999999999999999988899999998743 56788999999987763
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.8e-11 Score=111.86 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=103.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|..+|++ ++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 194 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-----------------------PEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-----------------------HHHHH
Confidence 4566788999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC------CCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVD------PFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~------p~~~~~~~~~~~~ 181 (476)
.++++++++|++..+++.+|.++...|++++|+..|+++++++ |.+..+...+..+
T Consensus 195 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 8777766655543
No 66
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.16 E-value=6.6e-12 Score=109.61 Aligned_cols=99 Identities=9% Similarity=-0.079 Sum_probs=90.4
Q ss_pred HHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHH
Q 011861 65 EAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLK 144 (476)
Q Consensus 65 ~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~ 144 (476)
.+-..|.++++++|+++.+++++|.++++.|++ ++|+..|+++++++|+++.+|+.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------------~eA~~~~~~al~~~P~~~~~~~~l 76 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRI-----------------------EEAEVFFRFLCIYDFYNVDYIMGL 76 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344668889999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 145 ANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 145 ~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
|.++..+|+|++|+..|+++++++|+++.+...+..+-..++
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg 118 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998877666554443
No 67
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=1.4e-10 Score=107.43 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=101.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
+..+...|..++..|+|++|+..|.++++..|+++ .+++++|.+|+++|+| ++|
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~-----------------------~~A 60 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-----------------------PLA 60 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-----------------------HHH
Confidence 56788999999999999999999999999999875 6899999999999999 999
Q ss_pred HHHHHHHhhccccchH---HHHHHHHHHHh------------------hhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 124 LKDAEKLLNLQSNSMK---SHLLKANALIL------------------LERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+..++++++.+|++.. +++.+|.++.. .|++++|+..|+++++.+|++..+......+
T Consensus 61 ~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 61 QAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 9999999999999875 89999999876 5799999999999999999998776554444
No 68
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.5e-11 Score=94.05 Aligned_cols=63 Identities=24% Similarity=0.538 Sum_probs=51.6
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHH
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSI 262 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~ 262 (476)
......+.|+||++.+.+|+.++|||+||..|+.+|+.....||.||..+. ..+..|..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~---~~~~~~~~l~~~ 72 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG---GIFNPAKELMAK 72 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC---SCCEECHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc---ccCCcHHHHHHH
Confidence 344567899999999999999999999999999999998889999999874 345555444333
No 69
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=98.92 Aligned_cols=63 Identities=25% Similarity=0.560 Sum_probs=53.5
Q ss_pred cccccccccccccCcEE-ccCCCcccHhhHHHhhhcC-CCCcccccccccCCCCcccchhHHHHHHH
Q 011861 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~-~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~ 265 (476)
+.+.|+||++.+.+|+. ++|||+||..||.+|+... ..||.||..+.. ..+..+..+.++++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL--RELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG--GGCEECTTHHHHHHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH--HHhHhhHHHHHHHHH
Confidence 47899999999999999 9999999999999999976 689999998843 566667777766654
No 70
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.15 E-value=1.1e-10 Score=110.17 Aligned_cols=110 Identities=22% Similarity=0.168 Sum_probs=104.2
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..+...|..++..|++++|+..|.++++++|+++.++.++|.+|...|++ ++|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A 96 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF-----------------------DAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH-----------------------HHH
Confidence 456778889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
+..++++++++|++..+++.+|.++...|++++|+..|+++++++|.+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999875443
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.14 E-value=1.2e-10 Score=106.05 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=95.9
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..++..|..++..|+|++|+..|.+++ +| ++.++.++|.+|..+|++ ++|+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~-----------------------~~A~ 57 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNM-----------------------TEAE 57 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 356678899999999999999999999996 33 678999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
..++++++++|++..+++.+|.++..+|+|++|+..|++++++.|.+.
T Consensus 58 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 58 KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999877
No 72
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.14 E-value=1.5e-10 Score=112.96 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=109.1
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....|..++..|++++|+..|.++++..|+++ .++..+|.+|...|++ ++|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~ 292 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-----------------------VEAI 292 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-----------------------HHHH
Confidence 345668999999999999999999999999987 4467799999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASLI 189 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~~ 189 (476)
..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+.+.+++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999888877654
No 73
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2.4e-11 Score=96.88 Aligned_cols=68 Identities=16% Similarity=0.473 Sum_probs=57.2
Q ss_pred CcccccccccccccCcEEcc-CCCcccHhhHHHhhhcC------CCCcc--cccc-cccCCCCcccchhHHHHHHHhCch
Q 011861 200 TDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG------NKCPL--CRAV-LFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~-cgh~fC~~Cl~~~~~~~------~~Cp~--cr~~-~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
...+.|+||+++|.+||+++ |||+||+.||..|+... ..||. |+.. +. ..++..|..|.++++.|...
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~--~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR--KSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC--GGGEEECHHHHHHHHHHHTT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC--HhhCcCCHHHHHHHHHHHHH
Confidence 46789999999999999996 99999999999999743 47999 8765 53 36788999999999887533
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=9.7e-11 Score=124.00 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=109.2
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A 76 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH-----------------------AEA 76 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-----------------------HHH
Confidence 345678899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
++.++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988776655544443
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.14 E-value=1e-10 Score=121.32 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=109.2
Q ss_pred HHHHHhhHHHHHh---------ccHHHHHHHHHHHhccCCCCcccccchhHHHHHH--------HhhhccCCCCCcccCC
Q 011861 48 FDLVQKGNRAFRE---------SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI--------SQFLKHRPPSASEYRP 110 (476)
Q Consensus 48 ~~~~~~g~~~~~~---------~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~~~~~ 110 (476)
..+...|..++.. |+|++|+..|.+|++++|+++.+|.++|.+|..+ |++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~------------- 237 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS------------- 237 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------------
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH-------------
Confidence 5677788888998 9999999999999999999999999999999999 999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhccc---cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 111 LNGLDPTTHAELALKDAEKLLNLQS---NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
++|+..+++|++++| +++.+|+.+|.+|..+|+|++|+..|+++++++|++..+...+..+...++.
T Consensus 238 ----------~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 238 ----------QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp ----------HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999888777766655554
Q ss_pred h
Q 011861 188 L 188 (476)
Q Consensus 188 ~ 188 (476)
.
T Consensus 308 ~ 308 (474)
T 4abn_A 308 L 308 (474)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=4.3e-12 Score=97.86 Aligned_cols=62 Identities=31% Similarity=0.750 Sum_probs=50.4
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhc-------CCCCcccccccccCCCCcccchhHH
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-------GNKCPLCRAVLFITPRTCAVSVTLN 260 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~-------~~~Cp~cr~~~~~~~~~~~~n~~l~ 260 (476)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. .++..|..+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~--~~l~~n~~l~ 75 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF--EHLQANQHLA 75 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS--SGGGTCSSSC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH--hhCCcCHHHH
Confidence 345678899999999999999999999999999999875 4579999998743 4555555443
No 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=3.9e-11 Score=130.12 Aligned_cols=111 Identities=6% Similarity=-0.086 Sum_probs=103.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|+|++|+..|++|++++|+++.+|.++|.+|.++|++ ++ +..
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~-----------------------~~-~~~ 522 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT-----------------------DE-HKF 522 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC-----------------------CT-TCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh-----------------------HH-HHH
Confidence 456777899999999999999999999999999999999999999999999 89 999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|++|++++|++..+|+.+|.++..+|++++|+..|+++++++|++..++..+..+
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877666555
No 78
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.11 E-value=1e-10 Score=93.19 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=86.3
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc-cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+..|..++..|+|++|+..|.++++.+|+++. ++.++|.+|..+|++ ++|+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~ 59 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-----------------------QKALNNYQ 59 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHH
Confidence 356899999999999999999999999999999 999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
++++++|++..++++ +.+.+|+..|.++...+|++..
T Consensus 60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccccc
Confidence 999999999988755 8889999999999999887764
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=2.6e-10 Score=94.38 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=99.7
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+...|..++..|++++|+..|.++++.+|++..++..+|.++...|++ ++|+..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-----------------------DEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCH-----------------------HHHHHHH
Confidence 35677899999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
+++++.+|++..+++.+|.++...|++++|+..+.++++.+|.+......+..
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999887765544433
No 80
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.10 E-value=2.2e-10 Score=111.81 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=104.8
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|..+|++ ++|+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 58 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS-----------------------KAALP 58 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 4678899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC---CCchhhHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDP---FSNPLQASLQ 179 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p---~~~~~~~~~~ 179 (476)
.++++++++|++..+++.+|.++...|++++|+..|+++++++| .+......+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 7777665553
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.09 E-value=2.6e-10 Score=117.62 Aligned_cols=107 Identities=24% Similarity=0.333 Sum_probs=101.7
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..+...|+.++..|+|++|+..|+++++.+| ++.+|.++|.+|..+|++ ++|
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~-----------------------~~A 58 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDL-----------------------KKV 58 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCH-----------------------HHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhH-----------------------HHH
Confidence 45788999999999999999999999999999999 699999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+...
T Consensus 59 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 109 (514)
T 2gw1_A 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS 109 (514)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999866553
No 82
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.08 E-value=1.9e-10 Score=119.33 Aligned_cols=114 Identities=17% Similarity=0.021 Sum_probs=106.7
Q ss_pred hHHHHHHhhHHHHHhccH-HHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNF-EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~-~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.+..+...|..++..|+| ++|+..|.+|++++|+++.+|.++|.+|...|++ ++|+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 157 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV-----------------------TSAH 157 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 467788999999999999 9999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhh---------hhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILL---------ERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
..|++|++++|+ ..+++.+|.++..+ |+|++|+..|+++++++|++..++..+..+-.
T Consensus 158 ~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 158 TCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL 224 (474)
T ss_dssp HHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999 69999999999999 99999999999999999999988776655543
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=4.5e-11 Score=106.34 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=99.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCC--cc-------
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP--TT------- 118 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------- 118 (476)
..+...|..++..|++++|+..|.++++.+|+++.++.++|.+|...|++-+ +...++.....++ ..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~----A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFEL----AQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHH----HHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHH----HHHHHHHhhhccCChHHHHHHHHH
Confidence 3467788888888899999999999888888888888888888888887721 1112222222222 00
Q ss_pred -hH-----HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch--hhHHHHHHH
Q 011861 119 -HA-----ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP--LQASLQNLE 182 (476)
Q Consensus 119 -~~-----~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~--~~~~~~~~~ 182 (476)
+. ..|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++.. +...+..+-
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 00 23688899999999999999999999999999999999999999999997643 555554443
No 84
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=4.9e-11 Score=105.61 Aligned_cols=70 Identities=29% Similarity=0.742 Sum_probs=59.5
Q ss_pred CCcccccccccccccCcEEc-cCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHHhCch
Q 011861 199 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPE 269 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~ 269 (476)
..+.+.|+||++.+.+|+.+ +|||+||..|+..|+.. ...||.||..+.. ...+..|..+.+++..+++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS-KRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS-GGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC-cccCCcCHHHHHHHHHHHcc
Confidence 45678999999999999987 99999999999999986 6679999998842 25678899999999998875
No 85
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=2.2e-11 Score=95.14 Aligned_cols=63 Identities=29% Similarity=0.754 Sum_probs=50.9
Q ss_pred CCCCCcccccccccccccCcEEccCCCcccHhhHHHhhhc------CCCCcccccccccCCCCcccchhHH
Q 011861 196 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR------GNKCPLCRAVLFITPRTCAVSVTLN 260 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~------~~~Cp~cr~~~~~~~~~~~~n~~l~ 260 (476)
.....+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. ..+..|..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~~~n~~l~ 81 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF--GNLKPNLHVA 81 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT--TCCEECSCCC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH--HhCCcCHHHH
Confidence 3445678899999999999999999999999999999886 5679999998743 3455554443
No 86
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.08 E-value=9e-11 Score=96.40 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHH
Q 011861 64 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLL 143 (476)
Q Consensus 64 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~ 143 (476)
++|+..|.++++.+|+++.++.++|.+|...|++ ++|+..++++++++|++..+|+.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~ 58 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF-----------------------DAALPHLRAALDFDPTYSVAWKW 58 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHHHCCCcHHHHHH
Confidence 3689999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 144 KANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 144 ~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+|.++..+|++++|+..|+++++++|.+..
T Consensus 59 la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999885443
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.07 E-value=2.4e-10 Score=107.82 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=89.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+...|..++..|+|++|+..|.++++.+|+++.++..+|.+|..+|++ ++|+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~~ 60 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY-----------------------DLAQKDI 60 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH-----------------------HHHHHHH
Confidence 44677888888888999999999998888888888888888888888888 8888888
Q ss_pred HHHhhccccc----hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 128 EKLLNLQSNS----MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 128 ~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
+++++ .|++ ..+|+.+|.++...|++++|+..|+++++++|.+..+...+..+-..
T Consensus 61 ~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 120 (272)
T 3u4t_A 61 ETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120 (272)
T ss_dssp HHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 88888 4433 33478888888888888888888888888888887766655554433
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=5.3e-10 Score=98.16 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=88.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.++++.+|+++.++.++|.++...|++ ++|+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 98 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY-----------------------DLAVPL 98 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 556677788888888888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++++++.+|++..+++.+|.++...|++++|+..++++++.+|.+..+...+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 153 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 8888888888888888888888888888888888888888887776655444433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=4.9e-10 Score=105.85 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=103.1
Q ss_pred HHHHHHhhHHHHH--------hccHHHHHHHHHHHhccCCCCcccc-----------------cchhHHHHHHHhhhccC
Q 011861 47 VFDLVQKGNRAFR--------ESNFEEAISNYSRANNIKPGDPIVL-----------------GNRSSAYIRISQFLKHR 101 (476)
Q Consensus 47 ~~~~~~~g~~~~~--------~~~~~~Ai~~y~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~~~ 101 (476)
...+...|..++. .|++++|+..|.++++.+|+++.+. +++|.+|...|++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~---- 164 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY---- 164 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH----
Confidence 4567888999999 9999999999999999999998777 8889999999999
Q ss_pred CCCCcccCCCCCCCCcchHHHHHHHHHHHhhcccc---chHHHHHHHHHHHhh----------hhHHHHHHHHhcccccC
Q 011861 102 PPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSN---SMKSHLLKANALILL----------ERYDMARDAILSGLQVD 168 (476)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~---~~~~~~~~~~~~~~~----------~~~~~A~~~~~~~l~l~ 168 (476)
++|+..++++++.+|+ ...+++.+|.+|..+ |++++|+..|+++++.+
T Consensus 165 -------------------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 165 -------------------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp -------------------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -------------------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999999999998 567999999999977 99999999999999999
Q ss_pred CCCchhhHHHHHHHHhh
Q 011861 169 PFSNPLQASLQNLERTT 185 (476)
Q Consensus 169 p~~~~~~~~~~~~~~~~ 185 (476)
|+++.+......+.+..
T Consensus 226 p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 226 PDSPLLRTAEELYTRAR 242 (261)
T ss_dssp TTCTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99987665554444433
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=88.34 Aligned_cols=53 Identities=32% Similarity=0.747 Sum_probs=47.3
Q ss_pred CCCCCCcccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 195 GTPERTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 195 ~~~~~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
......+.+.|+||++.+.+|+.+ +|||+||..||.+|+.....||.||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 344566789999999999999997 99999999999999988889999999874
No 91
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=88.58 Aligned_cols=52 Identities=23% Similarity=0.745 Sum_probs=45.4
Q ss_pred CCCCCcccccccccccccCcEEcc-CCCcccHhhHHHhhhcC--CCCcccccccc
Q 011861 196 TPERTDDFDCTLCLKLLYEPITTP-CGHSFCRSCLFQSMDRG--NKCPLCRAVLF 247 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~~~~-cgh~fC~~Cl~~~~~~~--~~Cp~cr~~~~ 247 (476)
.....+.+.|+||++.+.+|+.++ |||+||..||..|+... ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 445567899999999999999999 99999999999999854 57999999753
No 92
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.06 E-value=1.2e-10 Score=121.00 Aligned_cols=109 Identities=26% Similarity=0.346 Sum_probs=96.1
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.....+..+...|+.++..|+|++|+..|+++++.+|+++.+|.++|.+|..+|++ +
T Consensus 20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~ 76 (537)
T 3fp2_A 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL-----------------------E 76 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------H
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-----------------------H
Confidence 44567889999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
+|+..++++++++|++..+++.+|.++..+|++++|+..|+ ++.++|+....
T Consensus 77 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 77 KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 99999999999999999999999999999999999999996 88888876653
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=3.5e-10 Score=99.35 Aligned_cols=113 Identities=13% Similarity=0.159 Sum_probs=105.3
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|++++|+..|.++++.+|+++.++..+|.+|...|++ ++|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 63 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV-----------------------DRGTE 63 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4667888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.++++++++|++..+++.+|.++...|++++|...+.++++.+|.+..+...+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887766555444
No 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.06 E-value=2.5e-10 Score=105.56 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=88.0
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|++++|+..|.++++.+|+++.++..+|.+|...|++ ++|+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~ 146 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP-----------------------KLALP 146 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH-----------------------HHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4566677788888888888888888888888888888888888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.++++++++|++..+++.+|.++...|++++|+..|+++++.+|.+..+...+..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 202 (243)
T 2q7f_A 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888777776665544443
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=7.6e-11 Score=99.26 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=82.3
Q ss_pred HHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHh
Q 011861 71 SRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALIL 150 (476)
Q Consensus 71 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~ 150 (476)
.++..++|+.+..|.++|.+|++.|+| ++|+..|++|++++|+++.+|+.+|.++..
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 59 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGDY-----------------------PTAMRHYNEAVKRDPENAILYSNRAACLTK 59 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHh
Confidence 345668999999999999999999999 999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 151 LERYDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 151 ~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
+|++++|+..|+++++++|++..+...+..+-..++
T Consensus 60 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 999999999999999999999988776666544443
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=2.7e-10 Score=110.02 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=108.8
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH-----
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA----- 120 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 120 (476)
....+...|..++..|++++|+..|.++++.+|+++.++.++|.+|...|++- .+...++.+...++....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~----~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSE----DAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH----HHHHHHTTSCGGGCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHH----HHHHHHHhCchhhcchHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999871 112233333333331111
Q ss_pred ----------HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC--chhhHHHHHHHHhh
Q 011861 121 ----------ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS--NPLQASLQNLERTT 185 (476)
Q Consensus 121 ----------~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~--~~~~~~~~~~~~~~ 185 (476)
..|+..++++++++|++..+++.+|.++...|++++|+..|.++++.+|++ ..++..+..+-..+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 346788899999999999999999999999999999999999999999988 55666555554444
No 97
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.04 E-value=3.3e-10 Score=112.11 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=91.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|++++|+..|.++++++|+++.+|.++|.+|...|++ ++|+..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 269 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-----------------------EEAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 456777888889999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++++++++|++..+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999988764
No 98
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=87.30 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=45.9
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....+.+.|+||++.+.+|+.++|||.||..|+..|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345567899999999999999999999999999999998889999999763
No 99
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.4e-11 Score=94.03 Aligned_cols=62 Identities=29% Similarity=0.767 Sum_probs=50.6
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhc------CCCCcccccccccCCCCcccchhHH
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR------GNKCPLCRAVLFITPRTCAVSVTLN 260 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~------~~~Cp~cr~~~~~~~~~~~~n~~l~ 260 (476)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+.. .++..|..+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~~~n~~l~ 81 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP--ENIRPNRHVA 81 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS--SSCCCSCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH--HhcCccHHHH
Confidence 345678899999999999999999999999999999876 6679999998743 4555555443
No 100
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.02 E-value=4.5e-10 Score=110.77 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=94.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|++++|+..|.++++++|+++.++.++|.+|...|++ ++|+.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~ 272 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-----------------------EEAVA 272 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3566777899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
.++++++++|++..+++.+|.++...|++++|+..|+++++++|.+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999998877
No 101
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1e-10 Score=97.28 Aligned_cols=63 Identities=27% Similarity=0.663 Sum_probs=55.4
Q ss_pred cccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhC
Q 011861 201 DDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 267 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~ 267 (476)
+.+.|+||++.+.+|+++ +|||+||..||..|+. ..||.||..+. ...+..|..+.++++.+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~--~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW--IQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS--CSSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc--cccccccHHHHHHHHHHH
Confidence 478999999999999999 9999999999999987 67999999873 357888999999987653
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.02 E-value=1.3e-09 Score=102.82 Aligned_cols=108 Identities=6% Similarity=0.029 Sum_probs=98.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCccc----ccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIV----LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
..+...|..++..|+|++|+..|.++++ .|.++.. |.++|.+|..+|++ ++|
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~-----------------------~~A 93 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQD-----------------------SLA 93 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccH-----------------------HHH
Confidence 3577789999999999999999999999 5666655 89999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
+..++++++++|++..+++.+|.++...|++++|+..|+++++++|.+..+...+.
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888766555
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=6.1e-10 Score=92.13 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=96.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.+++...|.++.++.++|.++...|++ ++|+..
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 91 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-----------------------DEAIEY 91 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 455677899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+.++++.+|++..+++.+|.++...|++++|...+.++++.+|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999988863
No 104
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.01 E-value=1.5e-10 Score=114.65 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=101.5
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..+++.|+|++|+..|.++++.+|+++.+|.++|.+|..+|++ ++|+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~ 119 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE-----------------------QAAI 119 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 34566899999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
..++++++++|++..+++.+|.+|...|++++|+..|+++++++|.+....
T Consensus 120 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 999999999999999999999999999999999999999999998766544
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=8.7e-11 Score=101.80 Aligned_cols=97 Identities=13% Similarity=-0.004 Sum_probs=88.5
Q ss_pred HHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHH
Q 011861 66 AISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKA 145 (476)
Q Consensus 66 Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~ 145 (476)
+-..|.+++.++|++..+++++|.+++..|++ ++|+..++++++++|+++.+|+.+|
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg 62 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXY-----------------------EDAHXVFQALCVLDHYDSRFFLGLG 62 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCCh-----------------------HHHHHHHHHHHHcCcccHHHHHHHH
Confidence 34568899999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 146 NALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
.++..+|+|++|+..|+++++++|++..+...+..+-..+
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 9999999999999999999999999998877665554333
No 106
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.01 E-value=5.4e-10 Score=111.64 Aligned_cols=114 Identities=18% Similarity=0.076 Sum_probs=101.2
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....+...|..++..|++++|+..|.++++++|+++.+|.++|.+|.+.|++ ++|+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~ 291 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-----------------------AEAE 291 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-----------------------HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34667788899999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...+..+
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776655444
No 107
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=5e-11 Score=105.65 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=96.1
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEK 129 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (476)
+...++.++..|+|++|+..|.++++.+|+++.++..+|.+|...|++ ++|+..+++
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~~~~ 69 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY-----------------------SNSLLAYRQ 69 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHH
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHH
Confidence 445566688899999999999999999999999999999999999999 999999999
Q ss_pred HhhccccchHHHHHHHHH-HHhhhhH--HHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 130 LLNLQSNSMKSHLLKANA-LILLERY--DMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 130 al~l~p~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
+++++|+++.+++.+|.+ +...|++ ++|+..|+++++++|++..+...+..+.
T Consensus 70 al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999 7899999 9999999999999999988776655543
No 108
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.01 E-value=9.6e-10 Score=106.22 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=100.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccC---------CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIK---------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~---------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
...+...|..++..|++++|+..|.+++++. |.++.++.++|.+|..+|++
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------------------- 252 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY-------------------- 252 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH--------------------
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH--------------------
Confidence 4567778888889999999999999998876 66678889999999999999
Q ss_pred chHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus 253 ---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 253 ---AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp ---HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766654
No 109
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.01 E-value=6.5e-10 Score=112.87 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=105.7
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..+..+..+...|..++..|+|++|+..|+++++.+|+++.++..+|.+|..+|++ +
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-----------------------~ 77 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKS-----------------------K 77 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCH-----------------------H
Confidence 34466888999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc---hhhHHH
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN---PLQASL 178 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~---~~~~~~ 178 (476)
+|+..++++++++|++..+++.+|.+|...|++++|+..|+++++++|.+. .....+
T Consensus 78 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 78 AALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 554433
No 110
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.00 E-value=5.9e-10 Score=103.67 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=102.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhc--------------------------cCCCCcccccchhHHHHHHHhhhcc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANN--------------------------IKPGDPIVLGNRSSAYIRISQFLKH 100 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~~ 100 (476)
+..+...|..++..|++++|+..|.++++ .+|.++.++.++|.++...|++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW--- 155 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH---
Confidence 56778889999999999999999999999 7777889999999999999999
Q ss_pred CCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 101 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..
T Consensus 156 --------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 156 --------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp --------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877665555
Q ss_pred HH
Q 011861 181 LE 182 (476)
Q Consensus 181 ~~ 182 (476)
+-
T Consensus 216 ~~ 217 (258)
T 3uq3_A 216 AQ 217 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 111
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=85.18 Aligned_cols=51 Identities=31% Similarity=0.808 Sum_probs=44.8
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhh-cCCCCcccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~~ 247 (476)
....+.+.|+||++.+.+|+.++|||+||..|+.+|+. ....||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34566889999999999999999999999999999995 4567999999874
No 112
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.00 E-value=8.8e-10 Score=101.77 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=106.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....+...|..++..|++++|+..|.++++.+|++..++..+|.+|...|++ ++|+
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~ 111 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY-----------------------KEAK 111 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH-----------------------HHHH
Confidence 34678889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..++++++++|++..+++.+|.++...|++++|+..++++++++|.+..+...+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776554443
No 113
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=94.88 Aligned_cols=64 Identities=28% Similarity=0.834 Sum_probs=52.7
Q ss_pred ccccccccccccCcEEccCCCcccHhhHHHhhhcC---CCCcccccccccCCCCcccchhHHHHHHHhC
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLFITPRTCAVSVTLNSIIQKNF 267 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~---~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~ 267 (476)
.+.|+||++.+.+|+.++|||+||..|+..|+... ..||.||..+.. ..+..|..+.++++.+.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK--RSLQESTRFSQLVEELL 87 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT--TTCBCCCSSSHHHHHHH
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH--hhcCccHHHHHHHHHHH
Confidence 67899999999999999999999999999999854 379999998743 45666666666666553
No 114
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.00 E-value=9.9e-10 Score=111.52 Aligned_cols=117 Identities=14% Similarity=0.228 Sum_probs=107.9
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....|..++..|++++|+..|.++++++|+++ .++.++|.++.++|++ ++|+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~ 315 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP-----------------------VEAI 315 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH-----------------------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH-----------------------HHHH
Confidence 345569999999999999999999999999985 4889999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTASL 188 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~~ 188 (476)
..++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...+..+...+...
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999988888877666554
No 115
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.00 E-value=9.8e-10 Score=99.90 Aligned_cols=112 Identities=13% Similarity=0.017 Sum_probs=100.0
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+..+...|..++..|++++|+..|.++++.+|+++.++..+|.+|...|++ ++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A 61 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN-----------------------DKA 61 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCh-----------------------HHH
Confidence 345677889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhh-hhHHHHHHHHhcccc--cCCCCchhhHHH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILL-ERYDMARDAILSGLQ--VDPFSNPLQASL 178 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--l~p~~~~~~~~~ 178 (476)
+..++++++++|++..+++.+|.++... |++++|+..++++++ .+|.+..+...+
T Consensus 62 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 62 QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 9999999999999999999999999999 999999999999999 344434444333
No 116
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.00 E-value=1.3e-09 Score=108.79 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=107.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
.....+...|..+...|++++|+..|.+++.++|+++.++.++|.+|...|++ ++|+
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~ 257 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI-----------------------DLAI 257 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34677889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
..++++++++|+++.+++.+|.++...|++++|+..|+++++++|.+......+..+..
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887766655433
No 117
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3.4e-10 Score=85.67 Aligned_cols=51 Identities=35% Similarity=0.858 Sum_probs=44.8
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhh---cCCCCcccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLCRAVLF 247 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~---~~~~Cp~cr~~~~ 247 (476)
....+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||.||..+.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34567889999999999999999999999999999997 3457999999874
No 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.99 E-value=1.1e-09 Score=84.99 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=80.1
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|..+|++ ++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~ 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-----------------------HHHH
Confidence 34677888999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHhhh
Q 011861 125 KDAEKLLNLQSNSMKSHLLKANALILLE 152 (476)
Q Consensus 125 ~~~~~al~l~p~~~~~~~~~~~~~~~~~ 152 (476)
..++++++++|++..+++.+|.++...|
T Consensus 64 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987654
No 119
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.99 E-value=2.4e-10 Score=95.20 Aligned_cols=67 Identities=30% Similarity=0.725 Sum_probs=54.8
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCC-CCcccccccccCCCCcccchhHHHHHHH
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~-~Cp~cr~~~~~~~~~~~~n~~l~~~~~~ 265 (476)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||.||..+.. ..+..+..+.+.+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE--NQLFPDNFAKREILS 80 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH--HhcccCHHHHHHHcc
Confidence 34567899999999999999999999999999999998654 89999998743 345566666666655
No 120
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.97 E-value=1.1e-09 Score=107.97 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=101.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|...|++ ++|+..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 120 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE-----------------------LLAISA 120 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH-----------------------HHHHHH
Confidence 556788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++++++++|++..+++.+|.++...|++++|+..|.++++++|.+.....
T Consensus 121 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 121 LRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 99999999999999999999999999999999999999999998876554
No 121
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.97 E-value=2.2e-09 Score=103.66 Aligned_cols=112 Identities=12% Similarity=0.007 Sum_probs=89.5
Q ss_pred HHHHHHhhHHHHHhc-cHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 47 VFDLVQKGNRAFRES-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~-~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
...+...|..++..| ++++|+..|.++++++|+++.+|..+|.+|...|++ ++|+.
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 146 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH-----------------------DQAMA 146 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 455667777888888 888888888888888888888888888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
.++++++++|++..+++.+|.++...|++++|+..++++++.+|.+..+...+..+
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888877665544433
No 122
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.97 E-value=1.1e-09 Score=102.22 Aligned_cols=112 Identities=19% Similarity=0.120 Sum_probs=102.5
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|++++|+..|.++++.+|++..++..+|.+|...|++ ++|+.
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 92 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP-----------------------KLADE 92 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4788999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccc--cCCCCchhhHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ--VDPFSNPLQASLQN 180 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--l~p~~~~~~~~~~~ 180 (476)
.++++++++|++..+++.+|.++...|++++|+..|+++++ .+|.+..+...+..
T Consensus 93 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 66665555544433
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=2.3e-09 Score=99.21 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=94.2
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc---cccchhHHHHHHHhhhccCCCCCcccCCCCCCC----Ccch
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD----PTTH 119 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 119 (476)
...+...|..++..|+|++|+..|+++++.+|+++. +++.+|.+|..++.. ....++... ....
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 111 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS---------ALQGFFGVDRSDRDPQQ 111 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----------------------CCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh---------hhhhhhccchhhcCcHH
Confidence 457888999999999999999999999999999875 799999999875311 000000000 0111
Q ss_pred HHHHHHHHHHHhhccccchHHH-----------------HHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 120 AELALKDAEKLLNLQSNSMKSH-----------------LLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
.++|+..++++++.+|++..+. +.+|.+|...|+|++|+..|+++++..|+++..
T Consensus 112 ~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 112 ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 2999999999999999987654 678999999999999999999999999998744
No 124
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.8e-10 Score=81.78 Aligned_cols=46 Identities=39% Similarity=0.945 Sum_probs=40.7
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhh---cCCCCccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLC 242 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~---~~~~Cp~c 242 (476)
....+.+.|+||++.+.+|+.++|||+||..||.+|+. ....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567889999999999999999999999999999997 34579988
No 125
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.96 E-value=1.8e-09 Score=100.59 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=104.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.++++.+|++..++.++|.+|...|++ ++|+..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 127 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY-----------------------EEAYQR 127 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH-----------------------HHHHHH
Confidence 456777899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhh--ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 127 AEKLLN--LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 127 ~~~al~--l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++++++ .+|.+..+++.+|.++...|++++|+..|+++++.+|.+..+...+..+-
T Consensus 128 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 999999 88999999999999999999999999999999999999877666555443
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=2e-09 Score=106.40 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=90.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..+++.|+|++|+..|++|++++|+++.+|+++|.+|..+|++ ++|+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~~~ 252 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-----------------------ELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-----------------------HHHHHH
Confidence 567888999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHH-HHHHhcccc
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMA-RDAILSGLQ 166 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~l~ 166 (476)
+++|++++|++..+++.+|.++..+|++++| ...|.+.+.
T Consensus 253 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 253 FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 456666654
No 127
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.93 E-value=2.5e-09 Score=97.16 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=102.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHH-HhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
...+...|..++..|++++|+..|.++++.+|++..++.++|.+|... |++ ++|+.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~~A~~ 98 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP-----------------------AESMA 98 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH-----------------------HHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH-----------------------HHHHH
Confidence 456778899999999999999999999999999999999999999999 999 99999
Q ss_pred HHHHHhh--ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 126 DAEKLLN--LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 126 ~~~~al~--l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
.++++++ .+|.+..+++.+|.++...|++++|+..+.++++.+|.+......+..+-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999 67777899999999999999999999999999999998877666555443
No 128
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.93 E-value=1.3e-09 Score=105.51 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++|+..++++++.+|+++.+++.+|.++..+|++++|...|+++++++|+++.+..
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55555555555555555555555555555555555555555555555555554443
No 129
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8e-10 Score=86.82 Aligned_cols=52 Identities=27% Similarity=0.777 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccccC----cEEccCCCcccHhhHHHhhhcC---CCCcccccccc
Q 011861 196 TPERTDDFDCTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRG---NKCPLCRAVLF 247 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~----P~~~~cgh~fC~~Cl~~~~~~~---~~Cp~cr~~~~ 247 (476)
.....+.+.|+||++.+.+ |+.++|||+||..|+.+|+... ..||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3445668899999999998 9999999999999999999864 67999999874
No 130
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=5.4e-10 Score=83.45 Aligned_cols=51 Identities=33% Similarity=0.826 Sum_probs=45.2
Q ss_pred CCCCcccccccccccccCc-------EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P-------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....+.+.|+||++.+.+| +.++|||.||..|+..|+.....||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3455688999999999988 88999999999999999998889999998763
No 131
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.92 E-value=1.9e-09 Score=104.02 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=96.2
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.++++.+|+++.++.++|.+|...|++ ++|+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 228 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP-----------------------QEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 456677889999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
++++++++|++..+++.+|.++...|++++|+..|+++++++|.
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999998
No 132
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.91 E-value=3.9e-10 Score=84.82 Aligned_cols=49 Identities=35% Similarity=0.873 Sum_probs=44.5
Q ss_pred CCcccccccccccccCc-------EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P-------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..+.+.|+||++.+.+| +.++|||+||..|+.+|+.....||.||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 34678999999999998 88999999999999999998889999999874
No 133
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.90 E-value=4.9e-09 Score=98.62 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-----------------------~~A~~~ 133 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-----------------------KLAQDD 133 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 456778899999999999999999999999999999999999999999999 777777
Q ss_pred HHHHhhccccch--------------------------------------------------------------------
Q 011861 127 AEKLLNLQSNSM-------------------------------------------------------------------- 138 (476)
Q Consensus 127 ~~~al~l~p~~~-------------------------------------------------------------------- 138 (476)
++++++++|++.
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (275)
T 1xnf_A 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213 (275)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccccccc
Confidence 777777766653
Q ss_pred --HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 139 --KSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
.+++.+|.++...|++++|+..|+++++++|.+..
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 56677888888888888888888888888886654
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.90 E-value=5.6e-10 Score=95.53 Aligned_cols=94 Identities=12% Similarity=-0.016 Sum_probs=84.2
Q ss_pred HHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHH
Q 011861 68 SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANA 147 (476)
Q Consensus 68 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~ 147 (476)
..|.++++++|++...++++|.++++.|++ ++|+..+++++.++|+++.+|+.+|.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~ 61 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKW-----------------------DDAQKIFQALCMLDHYDARYFLGLGAC 61 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccH-----------------------HHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 568889999999999999999999999999 999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 148 LILLERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 148 ~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
+..+|+|++|+..|+++++++|+++.....+..+-..
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999887666555433
No 135
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.90 E-value=2.6e-09 Score=102.94 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=101.4
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|+|++|+..|.++++.+|+++.++..+|.++...|++ ++|+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD-----------------------GLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4556889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
.++++++++|++..+++.+|.++...|++++|+..+.++++.+|.+......
T Consensus 77 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 77 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999988765543
No 136
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.90 E-value=9.2e-10 Score=91.35 Aligned_cols=65 Identities=29% Similarity=0.732 Sum_probs=50.5
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhc-CCCCcccccccccCCCCcccchhHHHHHHH
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR-GNKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~ 265 (476)
.+.+.|+||++.+.+|+.++|||+||..|+.+|+.. +..||.||..+... .....+..+.+++.+
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT-DLESPVKSFLNILNS 86 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG-GCBCCCHHHHHHHHH
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh-hccccHHHHHHHHHH
Confidence 357899999999999999999999999999999986 67899999987432 222334455555543
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.89 E-value=2.1e-09 Score=111.47 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=94.1
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..+++.|+|++|+..|++|++++|+++.+|.++|.+|..+|++ ++|++
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~-----------------------~eA~~ 95 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-----------------------RAALR 95 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3667788999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHH--HHhhhhHHHHHHHHh-----------cccccCCCCchh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAIL-----------SGLQVDPFSNPL 174 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~-----------~~l~l~p~~~~~ 174 (476)
.+++|++++|++..++..+|.+ +...|+|++|+..+. ++++++|.....
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 9999999999999999999998 889999999999999 899988865443
No 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.89 E-value=5.9e-09 Score=100.79 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=79.6
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.|++++|+..|+++++.+|+++.+|.++|.++.++|++ ++|+..++++++++|+++.
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----------------------~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW-----------------------EAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHH
Confidence 47888888888888888888888888888888888888 8888888888888888888
Q ss_pred HHHHHHHHHHhhhhHHH-HHHHHhcccccCCCCchhhHH
Q 011861 140 SHLLKANALILLERYDM-ARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-A~~~~~~~l~l~p~~~~~~~~ 177 (476)
+++++|.++..+|++++ +...++++++++|+++.+...
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 88888888888888876 457778888888888877653
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=2.5e-09 Score=103.20 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHHHHHhhHHHHHh-ccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 47 VFDLVQKGNRAFRE-SNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 47 ~~~~~~~g~~~~~~-~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
+..+...|..+... |+|++|+.+|.+|+++.|.+ ..++.++|.+|..+|++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 174 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY---------------------- 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH----------------------
Confidence 45677788889997 99999999999999998865 46789999999999999
Q ss_pred HHHHHHHHHHHhhccccchH-------HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 120 AELALKDAEKLLNLQSNSMK-------SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
++|+..++++++++|++.. +++.+|.++..+|++++|+..|+++++++|......
T Consensus 175 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 175 -IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp -HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred -HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 9999999999999987653 678999999999999999999999999999877643
No 140
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=3.7e-09 Score=111.79 Aligned_cols=107 Identities=14% Similarity=0.011 Sum_probs=101.0
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|++++|+..|.++++++|+++.++.++|.+|..+|++ ++|++
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 112 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA-----------------------EAAAA 112 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3567788999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhh---hhHHHHHHHHhcccccCCCCchhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILL---ERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
.++++++++|++..+++.+|.++..+ |++++|...|+++++.+|.+....
T Consensus 113 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 113 AYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 99999999999999999999999999 999999999999999999875443
No 141
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.4e-09 Score=78.15 Aligned_cols=47 Identities=34% Similarity=0.947 Sum_probs=40.3
Q ss_pred CCCCCcccccccccccccCcEEccCCCcccHhhHHHhhh---cCCCCccc
Q 011861 196 TPERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD---RGNKCPLC 242 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~---~~~~Cp~c 242 (476)
.....+.+.|+||++.+.+|+.++|||+||..|+.+|+. ....||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 334556889999999999999999999999999999954 45679987
No 142
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.2e-09 Score=101.30 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=57.0
Q ss_pred CCcccccccccccccCcEEc-cCCCcccHhhHHHhhhcC--CCCcc--cccccccCCCCcccchhHHHHHHHh
Q 011861 199 RTDDFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRG--NKCPL--CRAVLFITPRTCAVSVTLNSIIQKN 266 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~--~~Cp~--cr~~~~~~~~~~~~n~~l~~~~~~~ 266 (476)
....+.|+||+..|.+||+. .|||+||+.||.+|+..+ ..||. |++.+. ..++.+|..|.++++.+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~--~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS--MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC--GGGEEECHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc--hhhCCcCHHHHHHHHHH
Confidence 45688999999999999985 999999999999999753 36999 999874 36889999999998765
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=5.7e-09 Score=90.28 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 103 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF-----------------------RAALRD 103 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 566788899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHH--HHhhhhHHHHHHHHhcccc
Q 011861 127 AEKLLNLQSNSMKSHLLKANA--LILLERYDMARDAILSGLQ 166 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~l~ 166 (476)
+.++++++|++..++..++.+ +...|++++|+..+.+...
T Consensus 104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 104 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999988555544 8899999999999887644
No 144
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.86 E-value=7.2e-10 Score=81.42 Aligned_cols=47 Identities=36% Similarity=0.882 Sum_probs=42.9
Q ss_pred cccccccccccccCc-------EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P-------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
+.+.|+||++.+.+| +.++|||.||..|+.+|+.....||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 467899999999887 78899999999999999998889999999874
No 145
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.86 E-value=8.7e-10 Score=88.53 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=69.7
Q ss_pred cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHH
Q 011861 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD 155 (476)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 155 (476)
.+|+++.+++++|.+|+.+|++ ++|+..++++++++|+++.+|+.+|.+|..+|+++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 58 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA-----------------------SRALALFEELVETDPDYVGTYYHLGKLYERLDRTD 58 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 4799999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCchh
Q 011861 156 MARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 156 ~A~~~~~~~l~l~p~~~~~ 174 (476)
+|+..|++++++.|.+...
T Consensus 59 ~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 59 DAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhcCCch
Confidence 9999999999998765554
No 146
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=81.23 Aligned_cols=50 Identities=34% Similarity=0.870 Sum_probs=44.8
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....+...|+||++.+.+ +.++|||.||..|+.+|+.....||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 345567899999999999 88999999999999999998889999999874
No 147
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=94.07 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=43.6
Q ss_pred CCcccccccccccccCcEEccCCCcccHhhHHHhhhcCC-CCccccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGN-KCPLCRAVL 246 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~-~Cp~cr~~~ 246 (476)
..+.+.|+||++.+.+|+.++|||+||..||.+|+..+. .||.||..+
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 457899999999999999999999999999999998654 799999975
No 148
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=6.5e-10 Score=79.41 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=40.2
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCccccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFI 248 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~~ 248 (476)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||.||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 46789999999999999999999999999876 34579999998754
No 149
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.85 E-value=1.6e-09 Score=76.98 Aligned_cols=47 Identities=34% Similarity=0.824 Sum_probs=41.7
Q ss_pred CcccccccccccccC---cEEcc-CCCcccHhhHHHhhhcCCCCccccccc
Q 011861 200 TDDFDCTLCLKLLYE---PITTP-CGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~---P~~~~-cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
.+...|+||++.+.+ ++.++ |||.||..|+.+|+.....||.||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 356789999999887 77786 999999999999999888999999865
No 150
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.84 E-value=2.4e-09 Score=82.05 Aligned_cols=52 Identities=25% Similarity=0.635 Sum_probs=44.4
Q ss_pred CCCCCcccccccccccccCc---EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 196 TPERTDDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P---~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.........|+||++.+.++ +.++|||.||..||.+|+.....||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 33455678999999999866 45699999999999999998889999999874
No 151
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.83 E-value=1.3e-09 Score=81.23 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=42.4
Q ss_pred cccccccccccccCc-EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P-~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....|+||++.+.+| +.++|||.||..|+.+|+.....||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999999997 67899999999999999998889999998873
No 152
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-09 Score=79.65 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=42.7
Q ss_pred CCCccccccccccccc---CcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 198 ERTDDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~---~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.......|+||++.+. .++.++|||.||..|+.+|+.....||.||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3456778999998874 4567899999999999999998888999999874
No 153
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.82 E-value=1.7e-09 Score=76.89 Aligned_cols=46 Identities=30% Similarity=0.792 Sum_probs=41.2
Q ss_pred cccccccccccccC----cEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 201 DDFDCTLCLKLLYE----PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~~----P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
+...|+||++.+.+ ++.++|||.||..|+.+|+.....||.||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 46789999999866 67889999999999999999888999999875
No 154
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.7e-09 Score=79.72 Aligned_cols=47 Identities=36% Similarity=0.822 Sum_probs=40.5
Q ss_pred cccccccccc-cccCc----EEccCCCcccHhhHHHhhhcC-CCCcccccccc
Q 011861 201 DDFDCTLCLK-LLYEP----ITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~-~~~~P----~~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~ 247 (476)
+++.|+||++ .+.+| +.++|||+||..|+.+|+.++ ..||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4678999999 89999 568999999999999997644 56999999874
No 155
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.79 E-value=3.2e-09 Score=83.96 Aligned_cols=49 Identities=22% Similarity=0.678 Sum_probs=43.3
Q ss_pred CCcccccccccccccC---cEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~---P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
......|+||++.+.. ++.++|||.||..||..|+.....||.||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4467799999998877 777899999999999999998889999998763
No 156
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=7.3e-09 Score=99.92 Aligned_cols=105 Identities=12% Similarity=-0.090 Sum_probs=94.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHH-HhhhccCCCCCcccCCCCCCCCcch
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRI-SQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
+..+...|..+...|+|++|+.+|.+|+++.|.. ..++.++|.+|... |++
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~---------------------- 134 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY---------------------- 134 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCH----------------------
Confidence 5677889999999999999999999999998754 46899999999995 999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 120 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
++|+..|++|+++.|.. ..++..+|.++..+|+|++|+..|+++++++|.+...
T Consensus 135 -~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 135 -AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred -HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999998864 5678999999999999999999999999999987653
No 157
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.78 E-value=1.4e-08 Score=103.90 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=97.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc---------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI---------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
+..+...|..++..|+|++|++.|.+|+++ +|.....|.|+|.+|..+|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~-------------------- 110 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL-------------------- 110 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh--------------------
Confidence 455667899999999999999999999986 666778899999999999999
Q ss_pred chHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHhh--hhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 118 THAELALKDAEKLLNLQS--------NSMKSHLLKANALILL--ERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p--------~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+..+++++++.+ ..+..+..+|.++... ++|++|+..|+++++++|+++.+...+..+.
T Consensus 111 ---~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 111 ---SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999998854 4567888999888654 5899999999999999999998877665553
No 158
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=3.1e-09 Score=80.80 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=43.4
Q ss_pred CCcccccccccccccCc---EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEP---ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P---~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..+...|+||++.+..+ +.++|||.||..|+.+|+.....||+||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 44577899999999887 67899999999999999998889999999874
No 159
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.78 E-value=8e-09 Score=107.18 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..++..|++++|+..|.++++.+|+ +.++..+|.+|...|++ ++|+..
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-----------------------~~A~~~ 298 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS-----------------------QEFFKF 298 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 444555555566666666666666666665555 55555555555555555 555555
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++++++++|+++.+++.+|.++...|+|++|+..|+++++++|.+..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55555555555555555555555555555555555555555555554443
No 160
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=80.91 Aligned_cols=52 Identities=29% Similarity=0.632 Sum_probs=44.1
Q ss_pred CCCCCcccccccccccccCcEE---ccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 196 TPERTDDFDCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 196 ~~~~~~~~~C~iC~~~~~~P~~---~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.........|+||++.+.++.. ++|||.||..||.+|+.....||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 3445567899999999987743 499999999999999998889999999874
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.78 E-value=1.1e-08 Score=105.39 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..+++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|+| ++|+.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~-----------------------~~A~~~ 373 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-----------------------ESAKGD 373 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 466778999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHH-HHhcccc
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARD-AILSGLQ 166 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~ 166 (476)
|++|++++|++..++..++.++..++++++|.. .|.+.+.
T Consensus 374 ~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 374 FEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998875 4555443
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.78 E-value=2.3e-09 Score=106.02 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=58.9
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+...|..+++.|+|++|+.+|++|++++|++..+|+++|.+|..+|++ ++|+.+++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-----------------------~~A~~~l~ 288 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-----------------------DSARDDFR 288 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHHH
Confidence 5667899999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccchHHHHHHHHHH-HhhhhHHHHHHHHhcccccCCCCchh
Q 011861 129 KLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
++++++|++..++..++.+. ...+.++.+...|.+++..+|.++..
T Consensus 289 ~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 289 KAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp HTTC-------------------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 99999999999999999884 56778889999999999999987753
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=1.6e-08 Score=91.29 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=84.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|+|++|+..|.++++++|+++.+++++|.+|..+|++ ++|+..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~~ 144 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-----------------------EEAKEN 144 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-----------------------HHHHHH
Confidence 367788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHH-HHHhccccc
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMAR-DAILSGLQV 167 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~l 167 (476)
++++++++|++..++..++.++..++++.++. ..|.+.+..
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999887 455555543
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.76 E-value=1.5e-08 Score=88.33 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=80.6
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
....+..+...|..++..|+|++|+..|++|++++|+++.+|+++|.+|..+|++ ++
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-----------------------~~ 115 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKL-----------------------DE 115 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH-----------------------HH
Confidence 3445678889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccch-HHHHHHHHHHHhhhhHHH
Q 011861 123 ALKDAEKLLNLQSNSM-KSHLLKANALILLERYDM 156 (476)
Q Consensus 123 a~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~ 156 (476)
|+.++.++++++|++. .....++.+....+++.+
T Consensus 116 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 116 AEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 556677777766665543
No 165
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.76 E-value=4.1e-09 Score=93.65 Aligned_cols=67 Identities=30% Similarity=0.729 Sum_probs=54.0
Q ss_pred CCCCcccccccccccccCcEEccCCCcccHhhHHHhhhcC-CCCcccccccccCCCCcccchhHHHHHHH
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRG-NKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~-~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~ 265 (476)
....+.+.|+||++.+.+|+.++|||+||..|+.+|+..+ ..||.||..+.. ..+..+..+.+.+.+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~--~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE--NQLFPDNFAKREILS 80 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG--GGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch--hhhhhhHHHHHHHhh
Confidence 3566789999999999999999999999999999999754 489999998743 344555566666654
No 166
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.76 E-value=1.2e-08 Score=107.66 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=99.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc------CCCC-cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI------KPGD-PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~------~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
...+...|..+++.|++++|+..|.++++. +|++ ..+|..+|.+|.+.|++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~---------------------- 532 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY---------------------- 532 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH----------------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH----------------------
Confidence 455677888888999999999999999888 5554 57889999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|++.++++++++|++..+|+.+|.+|...|++++|...|+++++++|++..+...+..+
T Consensus 533 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 -DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp -HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877766554
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=6.2e-09 Score=100.03 Aligned_cols=108 Identities=8% Similarity=0.046 Sum_probs=90.5
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
.+..+...|..++..|+|++|+..|.+|++++|+++.+++++|.+|..+|++ ++|+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 93 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY-----------------------DEAIA 93 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 4567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHH-----H--HHHH----------------------HHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 126 DAEKLLNLQSNSMKS-----H--LLKA----------------------NALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 126 ~~~~al~l~p~~~~~-----~--~~~~----------------------~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
.++++++++|++... + +.++ ...+..|++++|++.++++++++|.+..+..
T Consensus 94 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~ 173 (281)
T 2c2l_A 94 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173 (281)
T ss_dssp HHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTH
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhh
Confidence 999999999976311 1 1111 0112478999999999999999998765544
No 168
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.2e-08 Score=105.10 Aligned_cols=113 Identities=15% Similarity=0.048 Sum_probs=102.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc------cccchhHHHHH---HHhhhccCCCCCcccCCCCCCCCc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIR---ISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
...+...|..++..|++++|+..|.++++.+|+++. ++.++|.+|.. .|++
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------- 431 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF-------------------- 431 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH--------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH--------------------
Confidence 345667888999999999999999999999998866 89999999999 9999
Q ss_pred chHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+..++++++++|++..+++.+|.++...|++++|+..|+++++++|++..+...+...+
T Consensus 432 ---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 432 ---IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877654443
No 169
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=2e-08 Score=82.54 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.++++.+|+++.++.++|.+|..+|++ ++|+..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~~ 102 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH-----------------------VEAVAY 102 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 566788899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYD 155 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 155 (476)
+.++++++|++..+++.+|.++..+|+++
T Consensus 103 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 103 YKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998863
No 170
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=2.8e-08 Score=105.22 Aligned_cols=117 Identities=6% Similarity=-0.095 Sum_probs=106.1
Q ss_pred hhHHHHHHhhHHHHHhcc----------HHHHHHHHHHHhccCCCCcccccchhHHHHHHH--hhhccCCCCCcccCCCC
Q 011861 45 THVFDLVQKGNRAFRESN----------FEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS--QFLKHRPPSASEYRPLN 112 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~ 112 (476)
+.+..|..+|..+...|+ |++|+..|+++++.+|+++.+|..|+.++.+++ +|
T Consensus 61 ~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~--------------- 125 (567)
T 1dce_A 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW--------------- 125 (567)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH---------------
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH---------------
Confidence 345667778888888887 999999999999999999999999999999999 78
Q ss_pred CCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhh-hHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 113 GLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 113 ~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
+++++.+++++++||++..+|..+|.++..+| .+++|++++.++++.+|.|..++.....+-..
T Consensus 126 --------~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 126 --------ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 99999999999999999999999999999999 99999999999999999999988766555433
No 171
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.72 E-value=3.1e-08 Score=96.11 Aligned_cols=108 Identities=13% Similarity=-0.065 Sum_probs=57.3
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc-cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.+...|..+...|++++|+..|.++++++|.++. +|.++|.++.+.|++ ++|...|
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~~~ 157 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-----------------------KSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCH-----------------------HHHHHHH
Confidence 3444455555555555555555555555555554 555555555555555 5555555
Q ss_pred HHHhhccccchHHHHHHHHHHH-hhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 128 EKLLNLQSNSMKSHLLKANALI-LLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
++|++.+|.+...|...|.... ..|++++|+..|+++++++|++..++....
T Consensus 158 ~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 210 (308)
T 2ond_A 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 210 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5555555555444443333322 245555555555555555555554444333
No 172
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.72 E-value=1.2e-08 Score=77.99 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=40.0
Q ss_pred CCCccccccccccccc--CcEEcc--CCCcccHhhHHHhhhc-CCCCcccccccc
Q 011861 198 ERTDDFDCTLCLKLLY--EPITTP--CGHSFCRSCLFQSMDR-GNKCPLCRAVLF 247 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~--~P~~~~--cgh~fC~~Cl~~~~~~-~~~Cp~cr~~~~ 247 (476)
...+++.|+||++.+. ++..++ |||+||+.|+.+++.. ...||.||+.+.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3457889999999874 445555 9999999999998753 457999999874
No 173
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.71 E-value=5.6e-08 Score=94.28 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=96.0
Q ss_pred hHHHHHHhhHHHH-------HhccH-------HHHHHHHHHHhc-cCCCCcccccchhHHHHHHHhhhccCCCCCcccCC
Q 011861 46 HVFDLVQKGNRAF-------RESNF-------EEAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 110 (476)
Q Consensus 46 ~~~~~~~~g~~~~-------~~~~~-------~~Ai~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 110 (476)
.+..+...|..+. ..|++ ++|+..|.+|++ ++|++..+|.++|.++...|++
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~------------- 115 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY------------- 115 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH-------------
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH-------------
Confidence 3455566666655 34775 999999999999 7999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhccccchH-HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHH
Q 011861 111 LNGLDPTTHAELALKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQAS 177 (476)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~ 177 (476)
++|...|+++++++|+++. +|..+|..+...|++++|+..|.++++.+|.+..+...
T Consensus 116 ----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 116 ----------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp ----------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred ----------HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999987 99999999999999999999999999999987665543
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.71 E-value=2.1e-08 Score=82.44 Aligned_cols=89 Identities=10% Similarity=0.015 Sum_probs=78.6
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
.......+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-----------------------~~ 79 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-----------------------EQ 79 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-----------------------HH
Confidence 3456788999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
|+..++++++.+|+++... .|..|+..+...+
T Consensus 80 A~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l 111 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQ-----------SYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHH
Confidence 9999999999999987653 4556666666554
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=8.1e-09 Score=86.70 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=67.2
Q ss_pred cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHH
Q 011861 81 PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDA 160 (476)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (476)
+.++.++|.++++.|+| ++|+..|++|++++|+++.+|+.+|.+|..+|+|++|+.+
T Consensus 8 A~a~~~lG~~~~~~~~~-----------------------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDF-----------------------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence 46678899999999999 9999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCchhh
Q 011861 161 ILSGLQVDPFSNPLQ 175 (476)
Q Consensus 161 ~~~~l~l~p~~~~~~ 175 (476)
++++++++|.+....
T Consensus 65 ~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 65 CEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHTTCCH
T ss_pred HHHHHHhCcccchhh
Confidence 999999999876543
No 176
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=2.4e-08 Score=87.23 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=76.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|+|++|+..|.++++++|+++.+|+++|.+|..+|++ ++|+.
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------------~~A~~ 100 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY-----------------------KGAKE 100 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-----------------------HHHHH
Confidence 4567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALIL 150 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~ 150 (476)
.++++++++|++..+++.++.....
T Consensus 101 ~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 101 AYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999988888877654
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.69 E-value=4.9e-08 Score=97.78 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=85.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+..+...|..+++.|+|++|+.+|++|++++|+++.+|+++|.+|..+|++ ++|+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~eA~~~ 329 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-----------------------DQALAD 329 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-----------------------HHHHHH
Confidence 345667888899999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDA 160 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (476)
+++|++++|++..++..++.++..++++++|...
T Consensus 330 l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 330 LKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.69 E-value=3e-08 Score=105.00 Aligned_cols=118 Identities=10% Similarity=-0.048 Sum_probs=107.8
Q ss_pred hhhHHHHHHhhHHHHHhc--cHHHHHHHHHHHhccCCCCcccccchhHHHHHHH-hhhccCCCCCcccCCCCCCCCcchH
Q 011861 44 YTHVFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
++....|..+|..+.+.+ +|++|+..|+++++++|.+..+|.+|+.+..++| .+
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~----------------------- 160 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP----------------------- 160 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH-----------------------
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCCh-----------------------
Confidence 455677888888888888 7799999999999999999999999999999999 78
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhh--------------hhHHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILL--------------ERYDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
+++++.+.++++.+|.+..||+.+|.++..+ +.+++|++.+.+++.++|++..++..+.-+-..
T Consensus 161 ~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 9999999999999999999999999999875 889999999999999999999999887776443
No 179
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.68 E-value=9.4e-09 Score=96.53 Aligned_cols=101 Identities=14% Similarity=0.021 Sum_probs=92.8
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
...+..+...|..++..|+|++|+..|.+++++ +|....++.++|.+|...|++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------------ 101 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY------------------ 101 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH------------------
Confidence 345667888999999999999999999999987 466678999999999999999
Q ss_pred CcchHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 116 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++|+..+.+++++ +|....+++.+|.++...|++++|+..|++++++
T Consensus 102 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 102 -----KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998 5788899999999999999999999999999988
No 180
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.68 E-value=4.9e-08 Score=102.85 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=91.8
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..+++.|++++|+..|.++++++|++..+|..+|.+|.+.|++ ++|++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~~A~~~ 429 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH-----------------------DQAISA 429 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 455666788888888888888888888888888888888888888888888 888888
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
++++++.+|++..+++.+|.+|...|++++|+..|+++++++|.+..+...+..
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888888888888888888888888888888888888887766554433
No 181
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=3.6e-08 Score=81.59 Aligned_cols=85 Identities=11% Similarity=0.066 Sum_probs=80.1
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|++++|+..|.++++.+|+++.++.++|.+|..+|++ ++|+.
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~ 105 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY-----------------------TKAMD 105 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH-----------------------HHHHH
Confidence 3567888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhh
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLER 153 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~ 153 (476)
.++++++++|++..+++.+|.++...|+
T Consensus 106 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 106 VYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987763
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.9e-08 Score=80.88 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=66.1
Q ss_pred CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHH
Q 011861 80 DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARD 159 (476)
Q Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~ 159 (476)
++..+.++|.+++..|+| ++|+..++++++++|+++.+++.+|.++..+|+|++|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 59 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLY-----------------------REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHHHTTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 346788999999999999 999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCC
Q 011861 160 AILSGLQVDPFS 171 (476)
Q Consensus 160 ~~~~~l~l~p~~ 171 (476)
.|+++++++|++
T Consensus 60 ~~~~al~~~p~~ 71 (111)
T 2l6j_A 60 MCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHTSCSST
T ss_pred HHHHHHHhCCCc
Confidence 999999999998
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.67 E-value=1.4e-08 Score=78.58 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHH
Q 011861 79 GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMAR 158 (476)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~ 158 (476)
.++.++.++|.++...|++ ++|+..++++++++|++..+++.+|.++...|++++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~-----------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDY-----------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHccCH-----------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 3567899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCchhhHHHHHHH
Q 011861 159 DAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 159 ~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
..|+++++++|++..+...+..+.
T Consensus 64 ~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 64 EYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999988776665553
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=2.3e-08 Score=79.99 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=78.6
Q ss_pred cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHH
Q 011861 76 IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD 155 (476)
Q Consensus 76 ~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 155 (476)
++|+++.++..+|.++...|++ ++|+..++++++++|++..+++.+|.++...|+|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~-----------------------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~ 57 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY-----------------------TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE 57 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH
Confidence 4789999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCC--CchhhHHHHHHHHhh
Q 011861 156 MARDAILSGLQVDPF--SNPLQASLQNLERTT 185 (476)
Q Consensus 156 ~A~~~~~~~l~l~p~--~~~~~~~~~~~~~~~ 185 (476)
+|+..|+++++++|. +..+...+..+...+
T Consensus 58 ~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 58 EAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 999999999999999 777666555554333
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.67 E-value=5e-08 Score=78.04 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=72.5
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
..+..+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|++ ++|+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-----------------------~~A~ 61 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT-----------------------DDAI 61 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 45678899999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhccccchH--HHHHHHHHHHhhh
Q 011861 125 KDAEKLLNLQSNSMK--SHLLKANALILLE 152 (476)
Q Consensus 125 ~~~~~al~l~p~~~~--~~~~~~~~~~~~~ 152 (476)
..+++++++.|++.. ....+...+...+
T Consensus 62 ~~~~~al~l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 62 DTYAQGIEVAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence 999999999886543 3334444444443
No 186
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.66 E-value=1.2e-08 Score=84.28 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=39.6
Q ss_pred cccccccccccccCcE------------------EccCCCcccHhhHHHhhh-----cCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPI------------------TTPCGHSFCRSCLFQSMD-----RGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~------------------~~~cgh~fC~~Cl~~~~~-----~~~~Cp~cr~~~~ 247 (476)
.+..|+||++.+..|. .++|||.||..||..|+. ....||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997764 679999999999999994 4567999998874
No 187
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=4.5e-08 Score=81.19 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=75.3
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|++ ++|+.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-----------------------~~A~~ 93 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY-----------------------ASALE 93 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH-----------------------HHHHH
Confidence 3577888999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcc------ccchHHHHHHHHHHH
Q 011861 126 DAEKLLNLQ------SNSMKSHLLKANALI 149 (476)
Q Consensus 126 ~~~~al~l~------p~~~~~~~~~~~~~~ 149 (476)
.++++++++ |++..++..++.+..
T Consensus 94 ~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 94 TLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999 888888888777654
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.65 E-value=4.3e-08 Score=85.23 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=64.9
Q ss_pred hhHHHHHHhhHHHHHhccH----------HHHHHHHHHHhccCCCCcccccchhHHHHHHH-----------hhhccCCC
Q 011861 45 THVFDLVQKGNRAFRESNF----------EEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-----------QFLKHRPP 103 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~----------~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~~~~~ 103 (476)
..+..+...|..+...+++ ++||..|.+||+++|+++.+|+++|.+|..+| ++
T Consensus 34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~------ 107 (158)
T 1zu2_A 34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF------ 107 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccH------
Confidence 4567788889988888775 59999999999999999999999999999986 78
Q ss_pred CCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 104 SASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
++|++.|++|++++|++..
T Consensus 108 -----------------~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 108 -----------------DLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp -----------------HHHHHHHHHHHHHCTTCHH
T ss_pred -----------------HHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999853
No 189
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.64 E-value=6.3e-08 Score=76.77 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=71.9
Q ss_pred CCCCcccccchhHHHHHHHh---hhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhh
Q 011861 77 KPGDPIVLGNRSSAYIRISQ---FLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLER 153 (476)
Q Consensus 77 ~p~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~ 153 (476)
+|+++.++..+|.+++..++ . ++|...+++|+++||+++.+++.+|..++..|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~-----------------------~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~ 58 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMT-----------------------DEVSLLLEQALQLEPYNEAALSLIANDHFISFR 58 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCC-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCC-----------------------HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC
Confidence 68999999999999976665 4 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 154 YDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 154 ~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
|++|+..|++.++.+|.++........+
T Consensus 59 y~~Ai~~w~~~l~~~p~~~~~~~i~~~I 86 (93)
T 3bee_A 59 FQEAIDTWVLLLDSNDPNLDRVTIIESI 86 (93)
T ss_dssp HHHHHHHHHHHHTCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999999999999955544333333
No 190
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.64 E-value=3.1e-08 Score=99.19 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=95.9
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
...+..+...|..++..|+|++|+..|.++++++|+++ .++.++|.+|..+|++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------------- 102 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY---------------------- 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH----------------------
Confidence 56678889999999999999999999999999999987 5899999999999999
Q ss_pred HHHHHHHHHHHhhc------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 120 AELALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 120 ~~~a~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
++|+..+++++++ +|....+++.+|.++...|++++|+..|.+++++.
T Consensus 103 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 103 -NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999998 68888999999999999999999999999999873
No 191
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=3.7e-08 Score=84.79 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=94.1
Q ss_pred ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH---hhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc-c-
Q 011861 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS---QFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-S- 135 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p- 135 (476)
+....+...|.+++..+|.+..+.++.|.++.+.. ++ ++++..++..++.+ |
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~-----------------------~~gI~lLe~ll~~~~p~ 68 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDI-----------------------RKGIVLLEELLPKGSKE 68 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHH-----------------------HHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHH-----------------------HHHHHHHHHHHhcCCcc
Confidence 44567788888888989999999999999999966 66 89999999999999 7
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
++..++|++|.+++.+|+|++|+.+++++++++|+|..+....+.+++.+..
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999988888887755
No 192
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=9.8e-09 Score=87.02 Aligned_cols=48 Identities=35% Similarity=0.897 Sum_probs=44.2
Q ss_pred CcccccccccccccCc-------EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P-------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+.+.|+||++.+.+| +.++|||+||..||.+|+.....||.||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 3578999999999999 89999999999999999998889999999874
No 193
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=1.1e-08 Score=77.36 Aligned_cols=43 Identities=30% Similarity=0.839 Sum_probs=39.0
Q ss_pred cccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
++..|++|++.+.+|+.++|||. ||..|+..| ..||.||..+.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 36789999999999999999999 999999887 67999999874
No 194
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.61 E-value=5.3e-08 Score=93.47 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=94.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
....+...|..++..|+|++|+..|.++++.+|+++ .++..+|.+|...|++ +
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------------~ 60 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-----------------------A 60 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH-----------------------H
Confidence 356788899999999999999999999999999984 7888999999999999 9
Q ss_pred HHHHHHHHHhhc------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 122 LALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 122 ~a~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+|+..+++++++ .|....+++.+|.++...|++++|+..+.+++++.+...
T Consensus 61 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999988 566788999999999999999999999999998876543
No 195
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=4.5e-08 Score=95.03 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=85.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
+..+...|..+.. |+|++|+.+|.+|+++.|.. ..++.++|.+|..+|+|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----------------------- 171 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF----------------------- 171 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH-----------------------
Confidence 4566777888888 99999999999999887654 47788899999999999
Q ss_pred HHHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 121 ELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
++|+..+++++++.|++ ..+++.+|.++..+|++++|+..|++++ ++|......
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 99999999999987654 3477788888888899999999999999 888766543
No 196
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.61 E-value=5e-08 Score=91.49 Aligned_cols=101 Identities=17% Similarity=0.042 Sum_probs=93.4
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
...+..+...|..++..|+|++|+..|.+++++ +|....++.++|.+|..+|++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------ 143 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA------------------ 143 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH------------------
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH------------------
Confidence 344667788999999999999999999999998 577789999999999999999
Q ss_pred CcchHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 116 PTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++|+..+++++++ +|....+++.+|.++...|++++|+..+++++++
T Consensus 144 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 144 -----EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp -----HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999 7888899999999999999999999999999986
No 197
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.5e-08 Score=76.94 Aligned_cols=47 Identities=26% Similarity=0.661 Sum_probs=40.1
Q ss_pred cccccccccccccC--------------cEEc-cCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYE--------------PITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~--------------P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
++..|+||++.+.+ ++.+ +|||.||..||.+|+.....||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 46679999998876 4454 59999999999999998889999999863
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.59 E-value=8.2e-08 Score=75.93 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=65.9
Q ss_pred ccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH-HHHHHHHHHHhhhhHHHHHHHHh
Q 011861 84 LGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK-SHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
.+++|.++...|++ ++|+..++++++++|++.. +++.+|.++..+|++++|+..|+
T Consensus 3 ~~~~a~~~~~~~~~-----------------------~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 3 QLKTIKELINQGDI-----------------------ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp THHHHHHHHHHTCH-----------------------HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46789999999999 9999999999999999999 99999999999999999999999
Q ss_pred cccccCCCCchhh
Q 011861 163 SGLQVDPFSNPLQ 175 (476)
Q Consensus 163 ~~l~l~p~~~~~~ 175 (476)
++++++|++..+.
T Consensus 60 ~al~~~p~~~~~~ 72 (99)
T 2kc7_A 60 SAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHCTTSTHHH
T ss_pred HHHhcCCCcHHHH
Confidence 9999999999876
No 199
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=8.8e-08 Score=93.18 Aligned_cols=118 Identities=8% Similarity=-0.077 Sum_probs=104.9
Q ss_pred hHHHHHHhhHHH----HHh---ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 46 HVFDLVQKGNRA----FRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 46 ~~~~~~~~g~~~----~~~---~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
....+..++..+ ... +++++++..++++++.+|.+..+|..|+.+..+++++
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~--------------------- 160 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH--------------------- 160 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT---------------------
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---------------------
Confidence 344555566666 444 7999999999999999999999999999999999998
Q ss_pred hHH--HHHHHHHHHhhccccchHHHHHHHHHHHhhhh------HHHHHHHHhcccccCCCCchhhHHHHHHHHhhh
Q 011861 119 HAE--LALKDAEKLLNLQSNSMKSHLLKANALILLER------YDMARDAILSGLQVDPFSNPLQASLQNLERTTA 186 (476)
Q Consensus 119 ~~~--~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~------~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~ 186 (476)
+ ++++.+.++++.||.|..||..++.++..+++ ++++++.+.+++..+|.|..++..+.-+-..++
T Consensus 161 --~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 161 --NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp --TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred --ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 7 99999999999999999999999999999888 999999999999999999999988877755544
No 200
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=6.4e-08 Score=80.43 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=73.5
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAI 161 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (476)
..++.+|.++.+.|++ ++|+..++++++++|+++.+|+.+|.++...|++++|+..|
T Consensus 18 ~~~~~~g~~~~~~g~~-----------------------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANL-----------------------AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74 (121)
T ss_dssp SCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4577899999999999 99999999999999999999999999999999999999999
Q ss_pred hcccccCCCCchhhHHHHHHHHhh
Q 011861 162 LSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 162 ~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
+++++++|++..+...+..+-...
T Consensus 75 ~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 75 NHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999998877665554433
No 201
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.57 E-value=4.5e-08 Score=83.44 Aligned_cols=103 Identities=25% Similarity=0.233 Sum_probs=91.5
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
...+..+...|..++..|+|++|+..|.+++++.+... .++.++|.+|...|++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------------- 65 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF-------------------- 65 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH--------------------
Confidence 45577889999999999999999999999999876543 4899999999999999
Q ss_pred chHHHHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 118 THAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
++|+..+++++++.+.. ..+++.+|.++...|++++|+..+++++++.+
T Consensus 66 ---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 66 ---ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999987653 66899999999999999999999999987743
No 202
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=1.8e-07 Score=91.78 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=103.9
Q ss_pred hhhHHHHHHhhHHHHHhc--cHHHHHHHHHHHhccCCCCcccccchhHHHHHHHh-hhccCCCCCcccCCCCCCCCcchH
Q 011861 44 YTHVFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
++....+..++..+...+ ++++++.+++++++.+|.|..+|..|+.+...+|. +
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~----------------------- 161 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP----------------------- 161 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCH-----------------------
Confidence 455677777888887777 59999999999999999999999999999999888 6
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhh--------------hhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILL--------------ERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+++++.+.++++.+|.|..||..++.++..+ +.++++++.+.+++..+|+|..++..+.-+
T Consensus 162 ~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 162 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999887 789999999999999999999999765444
No 203
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=6.9e-08 Score=80.85 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=76.6
Q ss_pred ccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhH
Q 011861 75 NIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERY 154 (476)
Q Consensus 75 ~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 154 (476)
..+|.++..+..+|.+++..|+| ++|+..+.++++++|+++.+++.+|.++..+|+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~-----------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKY-----------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CCccccHHHHHHHHHHHHHhCcH-----------------------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH
Confidence 45678899999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCchhhHHHHHHH
Q 011861 155 DMARDAILSGLQVDPFSNPLQASLQNLE 182 (476)
Q Consensus 155 ~~A~~~~~~~l~l~p~~~~~~~~~~~~~ 182 (476)
++|+..|+++++++|++..+...+..+-
T Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 60 EQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 9999999999999999888776665553
No 204
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.56 E-value=5.3e-08 Score=92.95 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=92.5
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
..+..+...|..++..|++++|+..|.+++++ .|....++.++|.+|..+|++
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------- 211 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF------------------- 211 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH-------------------
Confidence 34566778899999999999999999999998 777788999999999999999
Q ss_pred cchHHHHHHHHHHHhhc-------------------------------------------------cccchHHHHHHHHH
Q 011861 117 TTHAELALKDAEKLLNL-------------------------------------------------QSNSMKSHLLKANA 147 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l-------------------------------------------------~p~~~~~~~~~~~~ 147 (476)
++|+..+++++++ +|....+++.+|.+
T Consensus 212 ----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 212 ----KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 9999999999985 46677899999999
Q ss_pred HHhhhhHHHHHHHHhcccccCCC
Q 011861 148 LILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 148 ~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
|...|++++|...|++++++.|.
T Consensus 288 ~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988764
No 205
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.55 E-value=1.1e-07 Score=97.09 Aligned_cols=124 Identities=11% Similarity=-0.010 Sum_probs=97.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..+...|++++|+..|.+|++.+|+++.++.++|.+|...+........ .............+.|+..
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE----NGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHhhHHHHHHH
Confidence 445667899999999999999999999999999999999999999876543111100 0000000111223889999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
+.++++++|++..+++.+|.++...|+|++|+..|+++++++|++...
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999999999999999999999999999998876553
No 206
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=1.5e-07 Score=91.44 Aligned_cols=115 Identities=7% Similarity=-0.134 Sum_probs=99.9
Q ss_pred HHHHHHhhHHHHHhc--cHHHHHHHHHHHhccCCCCcccccchhHHH----HHH---HhhhccCCCCCcccCCCCCCCCc
Q 011861 47 VFDLVQKGNRAFRES--NFEEAISNYSRANNIKPGDPIVLGNRSSAY----IRI---SQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~--~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
...+.-+|..+...+ ++++|+..+++++..+|++..+|..|+.++ ..+ +++
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~-------------------- 126 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP-------------------- 126 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT--------------------
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH--------------------
Confidence 355666777777777 999999999999999999999999999998 444 345
Q ss_pred chHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHH--HHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 118 THAELALKDAEKLLNLQSNSMKSHLLKANALILLERYD--MARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
.+++..+.++++.+|++..+++.++.++..+|.++ ++++.+.++++.||.|-.++.....+-..
T Consensus 127 ---~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 127 ---YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp ---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999 99999999999999999988766655433
No 207
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=4.9e-08 Score=93.95 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=88.1
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc-------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI-------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
..+..+...|..++..|+|++|+.+|.+|++. .+....++.++|.+|.++|+|
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-------------------- 212 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-------------------- 212 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH--------------------
Confidence 34556888999999999999999999999953 233346899999999999999
Q ss_pred chHHHHHHHHHHHhhccccc------hHHHHHHHHHHHhhh-hHHHHHHHHhcccccC
Q 011861 118 THAELALKDAEKLLNLQSNS------MKSHLLKANALILLE-RYDMARDAILSGLQVD 168 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~l~ 168 (476)
++|+..+++|+++.+.. ..+|+.+|.++..+| .+++|+..|++++.+.
T Consensus 213 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 213 ---EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ---HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999987654 779999999999999 5799999999998764
No 208
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=4.9e-08 Score=84.99 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=68.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhcc-------CCCCcccc----cchhHHHHHHHhhhccCCCCCcccCCCCCC
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-------KPGDPIVL----GNRSSAYIRISQFLKHRPPSASEYRPLNGL 114 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (476)
.+..+..+|..+...|+|++|+..|++||++ +|+++.+| +++|.++..+|++
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~----------------- 118 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG----------------- 118 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-----------------
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-----------------
Confidence 4558999999999999999999999999999 99999999 9999999999999
Q ss_pred CCcchHHHHHHHHHHHhhccccchHHHH
Q 011861 115 DPTTHAELALKDAEKLLNLQSNSMKSHL 142 (476)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l~p~~~~~~~ 142 (476)
++|+.+|++|++++|++...+-
T Consensus 119 ------eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 119 ------AEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp ------HHHHHHHHHHHHHHHHCCSCCT
T ss_pred ------HHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999998755433
No 209
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.53 E-value=7.8e-08 Score=95.51 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=95.1
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
..+..+...|..++..|+|++|+..|.+++++.|+++ .++..+|.+|...|++
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------------- 63 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY----------------------- 63 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCH-----------------------
Confidence 3467789999999999999999999999999999984 6899999999999999
Q ss_pred HHHHHHHHHHhhc------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 121 ELALKDAEKLLNL------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 121 ~~a~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++|+..+++++++ .|....+++.+|.++...|++++|+..+.+++++.|..
T Consensus 64 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999988 46678899999999999999999999999999987654
No 210
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=2.6e-08 Score=72.13 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=41.8
Q ss_pred ccccccccccccCcEEc-cCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 202 DFDCTLCLKLLYEPITT-PCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~-~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+.|++|++.+.+|+.+ +|||+||+.||.+|+.....||.+++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 57899999999999999 99999999999999986667999999874
No 211
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.52 E-value=1.7e-07 Score=89.44 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=97.6
Q ss_pred CCCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccC
Q 011861 38 SLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYR 109 (476)
Q Consensus 38 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 109 (476)
....+....+..+...|..++..|+|++|+..|.+++++ .|....++..+|.+|...|++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------ 85 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY------------ 85 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH------------
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH------------
Confidence 344556677889999999999999999999999999995 677789999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 110 PLNGLDPTTHAELALKDAEKLLNL--------QSNSMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 110 ~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
++|+..+++++++ +|....+++.+|.++...|++++|+..|.+++++.
T Consensus 86 -----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 86 -----------KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999988 47778899999999999999999999999999874
No 212
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.52 E-value=4.3e-08 Score=96.82 Aligned_cols=45 Identities=33% Similarity=0.792 Sum_probs=41.8
Q ss_pred cccccccccccCcEEccCCCcccHhhHHHhhh-cCCCCcccccccc
Q 011861 203 FDCTLCLKLLYEPITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVLF 247 (476)
Q Consensus 203 ~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~~ 247 (476)
..|+||++.+.+|+.++|||.||..|+..|.. ....||.||..+.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 68999999999999999999999999999998 6778999999874
No 213
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.51 E-value=2.2e-07 Score=87.84 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=90.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHH----HHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
..+..+...|..++..|++++|+..|.++++ |+++.++.++|.+|.. .+++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~----------------------- 58 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNL----------------------- 58 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH-----------------------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCH-----------------------
Confidence 4567788899999999999999999999998 7788999999999999 8999
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
++|+..++++++++ ++.+++.+|.+|.. .+++++|+..|+++++.+ +..+...+.
T Consensus 59 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 117 (273)
T 1ouv_A 59 KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLG 117 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHH
Confidence 99999999999885 78899999999998 999999999999998864 444444333
No 214
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=1.2e-07 Score=91.27 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=88.2
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHh---ccCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRAN---NIKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al---~~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
.+..+...|..++..|+|++|+..|.+|+ +..|++. .++.++|.+|..+|+|
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--------------------- 212 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--------------------- 212 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH---------------------
Confidence 46678889999999999999999999999 4456543 6999999999999999
Q ss_pred hHHHHHHHHHHHhhcccc------chHHHHHHHHHHHhhhhHHHH-HHHHhcccccC
Q 011861 119 HAELALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMA-RDAILSGLQVD 168 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A-~~~~~~~l~l~ 168 (476)
++|+..+++|+++.++ ...+|+.+|.++..+|++++| ...|++++.+.
T Consensus 213 --~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 213 --EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp --HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999998754 267999999999999999999 77799988764
No 215
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.51 E-value=2.6e-07 Score=91.03 Aligned_cols=124 Identities=10% Similarity=-0.048 Sum_probs=95.4
Q ss_pred hHHHHHHhhHHHHHh-c-cHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 46 HVFDLVQKGNRAFRE-S-NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~-~-~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
....+..++..+... + ++++++..++++++.+|++..+|..|+.+..+++.+ ......+..++
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~---------------~~~~~~~~~eE 186 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL---------------GRISEAQWGSE 186 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT---------------TCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---------------cccchhhHHHH
Confidence 344555566665555 5 677777777777777777777777777777777776 00011222499
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhhh-------HHHHHHHHhcccccCCCCchhhHHHHHHHHh
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLER-------YDMARDAILSGLQVDPFSNPLQASLQNLERT 184 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~ 184 (476)
++.+.++++.+|.|..||..++.++..+++ ++++++.+.+++.++|+|..++..+.-+-..
T Consensus 187 Le~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 187 LDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999998886 7999999999999999999999887766443
No 216
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=2.7e-07 Score=74.97 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=77.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|++++|+..|.++++.+|.++.++.++|.+|...|++ ++|+..
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----------------------~~A~~~ 99 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-----------------------DEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH-----------------------HHHHHH
Confidence 456778899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhh
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLE 152 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~ 152 (476)
++++++++|++..++..+|.++...|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 100 YQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.50 E-value=3.6e-07 Score=74.46 Aligned_cols=86 Identities=13% Similarity=-0.003 Sum_probs=73.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
....+...|..++..|+|++|+..|.++++++|+++.+|.++|.+|..+|++ ++|+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------------~~A~~ 74 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-----------------------AGARQ 74 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-----------------------HHHHH
Confidence 3567889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccccch--HHHHHHHHHHHhhhhH
Q 011861 126 DAEKLLNLQSNSM--KSHLLKANALILLERY 154 (476)
Q Consensus 126 ~~~~al~l~p~~~--~~~~~~~~~~~~~~~~ 154 (476)
.++++++++|.+. .+...+...+..+++.
T Consensus 75 ~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 75 AWESGLAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence 9999999998643 4444555555555544
No 218
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.50 E-value=1.3e-07 Score=94.30 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=90.0
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc-------ccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
....+..+...|..++..|++++|+.+|.+|+++.+... .++.++|.+|..+|++
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------------ 200 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY------------------ 200 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCH------------------
Confidence 344677888999999999999999999999999855543 5899999999999999
Q ss_pred CcchHHHHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 116 PTTHAELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++|+..+.+|+++.+.. ..+++.+|.+|..+|+|++|+..|++++++
T Consensus 201 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 201 -----EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999986543 358999999999999999999999999984
No 219
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=9.7e-08 Score=91.25 Aligned_cols=114 Identities=11% Similarity=-0.071 Sum_probs=96.4
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC--cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
.+... ..+..|..+++.++|++|+..|++++...++. ..+++++|.++..+|++
T Consensus 132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~----------------------- 187 (282)
T 4f3v_A 132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF----------------------- 187 (282)
T ss_dssp TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH-----------------------
Confidence 34455 77889999999999999999999888764221 35899999999999999
Q ss_pred HHHHHHHHHHhhcc--cc-chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQ--SN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
++|+..|++++.-. |. ...+++++|.++..+|+.++|...|++++..+|. ..+...+...
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999998654 65 7789999999999999999999999999999998 7666655443
No 220
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.48 E-value=5.7e-08 Score=71.20 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=43.3
Q ss_pred CCcccccccccccccCcEEc--cCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITT--PCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~--~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..++..|.+|++...+++.+ ||||. ||..|+..|...+..||.||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34567899999999999977 99999 899999999988888999999763
No 221
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=3.5e-07 Score=73.55 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=74.6
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|+|++|+..|.++++.+|+++.++.++|.+|..+|++ ++|+..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 94 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF-----------------------EEAKRT 94 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-----------------------HHHHHH
Confidence 567788999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~ 148 (476)
+.++++++|++..++..++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 95 YEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999998888764
No 222
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=3.9e-07 Score=89.81 Aligned_cols=110 Identities=15% Similarity=0.008 Sum_probs=91.1
Q ss_pred HHHHHhhHHHHHh-ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH-hhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 48 FDLVQKGNRAFRE-SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 48 ~~~~~~g~~~~~~-~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
..++..-...+.. +..++|+..++++|.++|++..+|..|+.++..++ .+ ++++.
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l-----------------------~eEL~ 110 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSL-----------------------EDELR 110 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhH-----------------------HHHHH
Confidence 3344434444444 44578999999999999999999999999999998 48 99999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhh-h-hHHHHHHHHhcccccCCCCchhhHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILL-E-RYDMARDAILSGLQVDPFSNPLQASLQN 180 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~l~l~p~~~~~~~~~~~ 180 (476)
.+.+++..+|++..+|+.++.++..+ + ++++++..+.++++.+|.|-.++....-
T Consensus 111 ~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~w 167 (349)
T 3q7a_A 111 LMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999887 7 8999999999999999998887655433
No 223
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.47 E-value=6.3e-08 Score=70.72 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=42.5
Q ss_pred CcccccccccccccCcEEc--cCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITT--PCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~--~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.....|.+|++...+++.+ ||||. ||..|+.++...+..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3467899999999999877 99998 999999999888888999999873
No 224
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.47 E-value=9.8e-08 Score=84.43 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc--h
Q 011861 61 SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS--M 138 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~--~ 138 (476)
++..+|+..|.++++.+|+++.+++++|.++...|++ ++|+..++++++++|++ .
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-----------------------~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRD-----------------------EEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHTTCTTTTTT
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHHHhCcccChH
Confidence 3444578888888899999999999999999999999 99999999999999986 5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 139 KSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
.+++.+|.++..+|++++|+..|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 6999999999999999999999998763
No 225
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=2.5e-07 Score=88.96 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=84.4
Q ss_pred HHhhHHHHHhccHHHHHHHHHHHhccCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHH
Q 011861 51 VQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELAL 124 (476)
Q Consensus 51 ~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (476)
...|..++..++|++|+..|.+|+.+.+.... ++.++|.+|..+|++ ++|+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-----------------------~~A~ 175 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL-----------------------KKGI 175 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCH-----------------------HHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCH-----------------------HHHH
Confidence 34678888889999999999999997655443 689999999999999 9999
Q ss_pred HHHHHHhh-------ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 125 KDAEKLLN-------LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 125 ~~~~~al~-------l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
..+++|++ ..+....+++.+|.+|..+|+|++|+..+++++++.+..
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 176 DLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 99999995 334556699999999999999999999999999886543
No 226
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=2e-07 Score=89.67 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=81.2
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
..+..+...+++++|+..|.+++..+|+++.+++++|.+|...|++ ++|+..+.+++
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-----------------------~~A~~~l~~~l 246 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-----------------------EEALELLFGHL 246 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHH
Confidence 3344455566666677778888889999999999999999999999 99999999999
Q ss_pred hccccc--hHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 132 NLQSNS--MKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 132 ~l~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
+.+|++ ..++..+|.++..+|+.++|...|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999 88999999999999999999999998764
No 227
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.46 E-value=9.6e-08 Score=77.34 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=40.0
Q ss_pred cccccccccccccCc------------------EEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 201 DDFDCTLCLKLLYEP------------------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P------------------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
++..|+||++.+..+ +.++|||.||..||.+|+.....||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 356799999988865 3469999999999999999988999999875
No 228
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.45 E-value=1.4e-07 Score=80.24 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=87.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
+..+...|..++..|+|++|+..|.+++++.+.. ..++.++|.+|...|++
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------- 105 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY----------------------- 105 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH-----------------------
Confidence 4567788999999999999999999999986543 57899999999999999
Q ss_pred HHHHHHHHHHhhccc------cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 121 ELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 121 ~~a~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
++|+..+++++++.+ ....+++.+|.++...|++++|...+++++++..
T Consensus 106 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 106 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 999999999998743 2356889999999999999999999999987643
No 229
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.45 E-value=1.8e-07 Score=93.31 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=92.7
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
...+..+...|..+...|+|++|+..|.+|+++.+... .++.++|.+|..+|++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-------------------- 240 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY-------------------- 240 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH--------------------
Confidence 34456778889999999999999999999999866544 5899999999999999
Q ss_pred chHHHHHHHHHHHhh-----cc-ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 118 THAELALKDAEKLLN-----LQ-SNSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 118 ~~~~~a~~~~~~al~-----l~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
++|+..+++|++ .+ |....+++.+|.++..+|++++|...+++++++.+
T Consensus 241 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 241 ---EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 46 88899999999999999999999999999998754
No 230
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=4.4e-07 Score=88.95 Aligned_cols=117 Identities=6% Similarity=-0.099 Sum_probs=102.6
Q ss_pred hHHHHHHhhHHHHHhcc----------HHHHHHHHHHHhccCCCCcccccchhHHHHHHHh--hhccCCCCCcccCCCCC
Q 011861 46 HVFDLVQKGNRAFRESN----------FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQ--FLKHRPPSASEYRPLNG 113 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~ 113 (476)
....+.-++......++ +++++.+++.++..+|.++.+|..|+.++..+++ +
T Consensus 63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~---------------- 126 (331)
T 3dss_A 63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW---------------- 126 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH----------------
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH----------------
Confidence 34555556666655444 7999999999999999999999999999999884 7
Q ss_pred CCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhh-HHHHHHHHhcccccCCCCchhhHHHHHHHHhh
Q 011861 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLER-YDMARDAILSGLQVDPFSNPLQASLQNLERTT 185 (476)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~ 185 (476)
.+++..+.++++.+|.|..+|..++.++..+|. ++++++.+.++++.+|.|..++.....+-..+
T Consensus 127 -------~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 127 -------ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp -------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 69999999999999999999998877765444
No 231
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=1.6e-07 Score=83.97 Aligned_cols=102 Identities=12% Similarity=-0.006 Sum_probs=90.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhc------cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANN------IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~------~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
..+..+...|..++..|+|++|+..|.+++. ..|....++.++|.+|..+|++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------- 82 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW--------------------- 82 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH---------------------
Confidence 3467788899999999999999999999999 4555678999999999999999
Q ss_pred hHHHHHHHHHHHhhc------cc-cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 119 HAELALKDAEKLLNL------QS-NSMKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 119 ~~~~a~~~~~~al~l------~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
++|+..+.+++++ ++ ....+++.+|.++...|++++|...+++++++.+
T Consensus 83 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 83 --DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp --HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 33 3456899999999999999999999999987643
No 232
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=6.6e-08 Score=73.35 Aligned_cols=42 Identities=31% Similarity=0.819 Sum_probs=37.4
Q ss_pred ccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
...|+||++.+.+|+.++|||. ||..|+.. ...||.||..+.
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVIT 67 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence 5689999999999999999999 99999964 367999999874
No 233
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.40 E-value=7.9e-08 Score=93.29 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=60.6
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCC--C----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPG--D----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
..+...|..+...|+|++|+.+|.+|+++.+. + ..++.++|.+|.. |++ +
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~-----------------------~ 132 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL-----------------------S 132 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH-----------------------H
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH-----------------------H
Confidence 34445556666666666666666666665322 1 2455566666666 666 6
Q ss_pred HHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 122 LALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+|+..|++|+++.|.. ..++..+|.+|..+|+|++|+..|++++++.|.+
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 6666666666665532 4466666666666666666666666666665443
No 234
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=6.5e-07 Score=85.97 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=83.0
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCC------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGD------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
+...|..+...|+|++|+..|.+|+++.+.. ..++.++|.+|..+|++ ++|
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-----------------------~~A 174 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL-----------------------KKG 174 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 4456777788899999999999999876544 35889999999999999 999
Q ss_pred HHHHHHHhhc---cccc----hHHHHHHHHHHHhhhhHHHHHHHHhcccccCC
Q 011861 124 LKDAEKLLNL---QSNS----MKSHLLKANALILLERYDMARDAILSGLQVDP 169 (476)
Q Consensus 124 ~~~~~~al~l---~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p 169 (476)
+..+++|+++ .|++ ..+++.+|.+|..+|+|++|+..+++++++.+
T Consensus 175 ~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999944 4543 26999999999999999999999999998754
No 235
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.40 E-value=6.1e-07 Score=89.37 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=92.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCC------CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPG------DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
..+..+...|..++..|+|++|+..|.+|+++.+. ...++.++|.+|..+|++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~--------------------- 238 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD--------------------- 238 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH---------------------
Confidence 34667778899999999999999999999997432 246899999999999999
Q ss_pred hHHHHHHHHHHHhh-----ccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 119 HAELALKDAEKLLN-----LQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 119 ~~~~a~~~~~~al~-----l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
++|+..+.+|++ .+|....+++.+|.++..+|++++|+..+++++++.+.
T Consensus 239 --~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 239 --QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred --HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 78888999999999999999999999999999998664
No 236
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=9.2e-07 Score=74.49 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|..++..|+|++|+..|.++++++|+++.++.++|.+|..+|++ ++|+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----------------------~~A~~~ 121 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL-----------------------DQAVLD 121 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH-----------------------HHHHHH
Confidence 567788899999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccccchHHHHHHHHHH
Q 011861 127 AEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~ 148 (476)
++++++++|++..++..++.+.
T Consensus 122 ~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 122 LQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999998888777664
No 237
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=5.9e-07 Score=93.08 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=93.6
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhcc-----CCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
.+....+++..+..+|+|++|+..|.+++++ .|+. ...+.++|.+|..+|+|
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~-------------------- 367 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAY-------------------- 367 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCH--------------------
Confidence 3556677888888999999999999999986 3333 47899999999999999
Q ss_pred chHHHHHHHHHHHhhcc-----ccc---hHHHHHHHHHHHhhhhHHHHHHHHhccccc-----CCCCchhhHHHHHH
Q 011861 118 THAELALKDAEKLLNLQ-----SNS---MKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNL 181 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~-----p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l-----~p~~~~~~~~~~~~ 181 (476)
++|+..+++++++. |++ ...++++|.+|...|+|++|...|++++++ .|+++.+......+
T Consensus 368 ---~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 368 ---EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999863 444 558999999999999999999999999974 67777766544433
No 238
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.35 E-value=1.3e-07 Score=79.98 Aligned_cols=48 Identities=35% Similarity=0.897 Sum_probs=43.8
Q ss_pred CcccccccccccccCc-------EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEP-------ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P-------~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+...|++|++.+.+| +.++|||.||..|+.+|+.....||.||..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4577899999999887 88899999999999999999899999999874
No 239
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.1e-06 Score=72.54 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=71.1
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...+...|..++..|+|++|+..|.++++.+|++ +.+++++|.+|..+|++ ++|
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~-----------------------~~A 95 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN-----------------------TEA 95 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH-----------------------HHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH-----------------------HHH
Confidence 3678889999999999999999999999999999 78899999999999999 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~ 148 (476)
+..++++++.+|++..+...+..+-
T Consensus 96 ~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 96 QQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999987665554443
No 240
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.34 E-value=1.1e-06 Score=70.81 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=65.7
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccC-------CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIK-------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
.+.+.+..|+.+|+.++|.+|+..|.+|++.. +..+.++.++|.+|+++|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~--------------------- 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL--------------------- 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH---------------------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH---------------------
Confidence 36778999999999999999999999999873 23457788888899999988
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHH
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKA 145 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~ 145 (476)
+.|+..+++|++++|++..+..+++
T Consensus 63 --~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 --DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp --HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 8899989999999998888777666
No 241
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.33 E-value=3.5e-07 Score=90.73 Aligned_cols=103 Identities=24% Similarity=0.193 Sum_probs=92.8
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
.+..+...|..++..|+|++|+..|.+++++.+.... ++.++|.+|..+|++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------------- 243 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF---------------------- 243 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh----------------------
Confidence 3456777899999999999999999999999877665 999999999999999
Q ss_pred HHHHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 120 AELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++|+..+++++++.|.. ..+++.+|.++...|++++|+..|++++++.+..
T Consensus 244 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 244 -ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999998766 7799999999999999999999999999886544
No 242
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=2.5e-07 Score=70.82 Aligned_cols=42 Identities=33% Similarity=0.816 Sum_probs=37.7
Q ss_pred ccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
...|++|++...+|+.+||||. ||..|+..+ ..||.||..+.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 5689999999999999999999 999999865 38999999874
No 243
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.30 E-value=6.7e-07 Score=91.22 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=91.2
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc-----CCCCc---ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGDP---IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
+....+.++..-..|+|++|+..|.+++++ .|+++ ..+.++|.+|..+|+|
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~--------------------- 356 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW--------------------- 356 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH---------------------
Confidence 334555566666678999999999999986 44443 7789999999999999
Q ss_pred hHHHHHHHHHHHhhcc-----cc---chHHHHHHHHHHHhhhhHHHHHHHHhccccc-----CCCCchhhHHHHHH
Q 011861 119 HAELALKDAEKLLNLQ-----SN---SMKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNL 181 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~-----p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l-----~p~~~~~~~~~~~~ 181 (476)
++|+..+++++++- |+ -...++++|.+|..+|+|++|...|++++++ .|+++.+.....++
T Consensus 357 --~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 357 --EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp --HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99999999999862 44 4558999999999999999999999999984 67777776655544
No 244
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.29 E-value=8e-07 Score=88.52 Aligned_cols=115 Identities=15% Similarity=0.014 Sum_probs=94.1
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC-------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCC
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLD 115 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (476)
....+..+...|..++..|++++|+.+|.+|+++.+.. ..++.++|.+|..+|++
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~------------------ 198 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY------------------ 198 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCH------------------
Confidence 34567778889999999999999999999999875532 35788999999999999
Q ss_pred CcchHHHHHHHHHHHhhccc------cchHHHHHHHHHHHhhhhHHHHHHHHhcccc-----cCCCCchhhHHHHH
Q 011861 116 PTTHAELALKDAEKLLNLQS------NSMKSHLLKANALILLERYDMARDAILSGLQ-----VDPFSNPLQASLQN 180 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----l~p~~~~~~~~~~~ 180 (476)
++|+..+.+|+++.+ ....+++.+|.++..+|++++|+..|+++++ .+|....+...+..
T Consensus 199 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 199 -----DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 999999999999753 2356899999999999999999999999999 56555444443333
No 245
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=1.7e-06 Score=81.62 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=87.2
Q ss_pred HHHHHHhhHHHHH----hccHHHHHHHHHHHhccCCCCcccccchhHHHHH----HHhhhccCCCCCcccCCCCCCCCcc
Q 011861 47 VFDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 47 ~~~~~~~g~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
...+...|..++. .+++++|+..|.++++.+ ++.++.++|.+|.. .+++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~--------------------- 94 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT--------------------- 94 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH---------------------
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH---------------------
Confidence 4567788999999 999999999999999986 88999999999999 9999
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccC
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVD 168 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~ 168 (476)
++|+..++++++.+ ++.+++.+|.+|.. .+++++|+..|+++++.+
T Consensus 95 --~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 95 --NKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp --HHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 99999999999884 88999999999999 999999999999999876
No 246
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.27 E-value=4.9e-07 Score=86.60 Aligned_cols=102 Identities=25% Similarity=0.191 Sum_probs=90.9
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc------cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
+..+...|..++..|++++|+..|.+++++.+.... ++.++|.+|...|++
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------------- 239 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF----------------------- 239 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-----------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-----------------------
Confidence 456677899999999999999999999998765544 999999999999999
Q ss_pred HHHHHHHHHHhhccccc------hHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 121 ELALKDAEKLLNLQSNS------MKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++|+..+++++++.+.. ..+++.+|.++...|++++|...+++++++.+..
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999988765 7799999999999999999999999999876543
No 247
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.27 E-value=1.7e-06 Score=85.34 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=75.9
Q ss_pred hHHHHHHhhHHHHHh---ccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccC------------C
Q 011861 46 HVFDLVQKGNRAFRE---SNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYR------------P 110 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~ 110 (476)
.+.+++.+|..++.. .++.+|+.+|.+|++++|+++.+|..++.+|.....+ . ........ .
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~--~-~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ--H-PLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--S-CCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc--C-CCchhhHHHHHHHHHHHHhcc
Confidence 467788889888875 4568999999999999999999999999999854433 0 00000000 0
Q ss_pred CCCCCCcc------------hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 111 LNGLDPTT------------HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 111 ~~~~~~~~------------~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+...++.. ..++|+..+++|+.++|+ ..+|..+|.++...|++++|.+.|.+|+.++|..+
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 00000000 015556666666666653 44555666666666666666666666666666543
No 248
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=6.9e-07 Score=66.15 Aligned_cols=47 Identities=28% Similarity=0.762 Sum_probs=40.3
Q ss_pred CCCCcccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
....+...|.||++...+++.+||||. ||..|+.. ...||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 344567899999999999999999999 99999984 367999999874
No 249
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.26 E-value=9.3e-07 Score=80.85 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=91.5
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH----hhhccCCCCCcccCCCCCCCCcchH
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS----QFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
..+..+...|..++..+++++|+..|.+|++. +++.+++++|.+|.. + ++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~----------------------- 69 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADY----------------------- 69 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCH-----------------------
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCH-----------------------
Confidence 45678889999999999999999999999886 588999999999988 6 77
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccCCC--CchhhHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPF--SNPLQASLQ 179 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p~--~~~~~~~~~ 179 (476)
++|+..+++|+ ++.++.+++.+|.+|.. .+++++|+..|+++.+.++. ++.+...+.
T Consensus 70 ~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 70 PQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 99999999995 46789999999999987 88999999999999998873 244444333
No 250
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.26 E-value=2.1e-06 Score=89.72 Aligned_cols=114 Identities=12% Similarity=-0.035 Sum_probs=86.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc-ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP-IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
...+...|..+...|++++|+..|.+++++.|.++ .+|.+.+.++.+.|++ ++|.+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~A~~ 377 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI-----------------------KSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH-----------------------HHHHH
Confidence 44555666667778888888888888888888875 5788888888888888 88888
Q ss_pred HHHHHhhccccchHHHHHHHHH-HHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHH
Q 011861 126 DAEKLLNLQSNSMKSHLLKANA-LILLERYDMARDAILSGLQVDPFSNPLQASLQNLER 183 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~ 183 (476)
.+.+|++..|.....+...|.. +...|++++|+..|+++++.+|++..++.....+..
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8888888888777777666655 335788888888888888888888777665555533
No 251
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.25 E-value=1.9e-06 Score=87.78 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=96.0
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc-----CCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI-----KPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
+.........+..+|+|++|+..|.+++++ .|++ ...+.++|.+|..+|+|
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~--------------------- 345 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL--------------------- 345 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH---------------------
Confidence 445556667788899999999999999976 3344 37889999999999999
Q ss_pred hHHHHHHHHHHHhhcc-----ccc---hHHHHHHHHHHHhhhhHHHHHHHHhccccc-----CCCCchhhHHHHHHHHhh
Q 011861 119 HAELALKDAEKLLNLQ-----SNS---MKSHLLKANALILLERYDMARDAILSGLQV-----DPFSNPLQASLQNLERTT 185 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~-----p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l-----~p~~~~~~~~~~~~~~~~ 185 (476)
++|+..+++++++. |++ ...++++|.+|...|+|++|...|++++++ .|+++.+.....++....
T Consensus 346 --~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 346 --EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp --HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999999999763 444 458999999999999999999999999984 678888777666665544
Q ss_pred h
Q 011861 186 A 186 (476)
Q Consensus 186 ~ 186 (476)
.
T Consensus 424 ~ 424 (429)
T 3qwp_A 424 A 424 (429)
T ss_dssp H
T ss_pred H
Confidence 4
No 252
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=1.1e-06 Score=78.50 Aligned_cols=103 Identities=12% Similarity=-0.006 Sum_probs=87.4
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc---CCC----CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNI---KPG----DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
..+..+...|..++..|++++|+..|.+++.+ .++ ...++.++|.+|..+|++
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------------------- 123 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL-------------------- 123 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH--------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH--------------------
Confidence 34567788899999999999999999999998 442 346799999999999999
Q ss_pred chHHHHHHHHHHHhhcccc------chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC
Q 011861 118 THAELALKDAEKLLNLQSN------SMKSHLLKANALILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
++|+..+++++++.+. ...++..+|.++...|++++|...+.+++++...
T Consensus 124 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 124 ---AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999987532 2346789999999999999999999999987543
No 253
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.21 E-value=8.1e-07 Score=88.76 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=90.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc------CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
+..+...|..++..|+|++|+..|.+++++ .|....++.++|.+|..+|++
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------------- 142 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF----------------------- 142 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 356778899999999999999999999998 577789999999999999999
Q ss_pred HHHHHHHHHHhhc------cccchHHHHHHHHHHHhhhh-----------------HHHHHHHHhcccccC
Q 011861 121 ELALKDAEKLLNL------QSNSMKSHLLKANALILLER-----------------YDMARDAILSGLQVD 168 (476)
Q Consensus 121 ~~a~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~~l~l~ 168 (476)
++|+..+++++++ .|....+++.+|.++...|+ |++|+..+.+++++.
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999 67778899999999999999 999999999988764
No 254
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.20 E-value=5.4e-06 Score=86.52 Aligned_cols=106 Identities=9% Similarity=-0.042 Sum_probs=93.9
Q ss_pred HHHHHHhhHHHHH-------hccHH-------HHHHHHHHHhc-cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCC
Q 011861 47 VFDLVQKGNRAFR-------ESNFE-------EAISNYSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (476)
Q Consensus 47 ~~~~~~~g~~~~~-------~~~~~-------~Ai~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (476)
...+...|..+.. .|+++ +|+..|.+|++ ++|++..+|..+|..+.+.|++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~-------------- 337 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY-------------- 337 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH--------------
Confidence 3455666776665 69987 99999999998 8999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhccccch-HHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 112 NGLDPTTHAELALKDAEKLLNLQSNSM-KSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
++|...|+++++++|+++ .+|...|..+...|++++|+..|.++++..|.+....
T Consensus 338 ---------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 338 ---------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp ---------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred ---------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 999999999999999985 6999999999999999999999999999988765543
No 255
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.20 E-value=1.3e-06 Score=79.82 Aligned_cols=106 Identities=8% Similarity=-0.046 Sum_probs=81.8
Q ss_pred HHHHHHhhHHHHHhc----cHHHHHHHHHHHhccCCCCcccccchhHHHHH----HHhhhccCCCCCcccCCCCCCCCcc
Q 011861 47 VFDLVQKGNRAFRES----NFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTT 118 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~----~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (476)
+.++...|..++. + ++++|+..|.+|.+ ++++.+++++|.+|.. .+++
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~--------------------- 105 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDV--------------------- 105 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCH---------------------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCH---------------------
Confidence 4556667777777 6 88889998888854 4678888888888876 6677
Q ss_pred hHHHHHHHHHHHhhccc--cchHHHHHHHHHHHh----hhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 119 HAELALKDAEKLLNLQS--NSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
.+|+..+++|++.+| +++.+++.+|.+|.. .+++++|+..|+++.++ |.+..+...+.
T Consensus 106 --~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 106 --AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp --HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 888888888888887 468888888888887 77888888888888877 45555444433
No 256
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.9e-06 Score=70.54 Aligned_cols=84 Identities=10% Similarity=0.105 Sum_probs=75.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC-------cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
...+...|..++..|+|++|+..|.+++...|++ +.++.++|.+|..+|++
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------------- 95 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY---------------------- 95 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH----------------------
Confidence 5667888999999999999999999999998877 88999999999999999
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhH
Q 011861 120 AELALKDAEKLLNLQSNSMKSHLLKANALILLERY 154 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 154 (476)
++|+..++++++++| +......++.+...+++.
T Consensus 96 -~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 96 -KDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp -HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999 578888888887666543
No 257
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.12 E-value=3.6e-07 Score=75.00 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=0.5
Q ss_pred ccccccccccccCc-----------------E-EccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 202 DFDCTLCLKLLYEP-----------------I-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~~P-----------------~-~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
+..|+||++.+.++ + ..+|+|.||..||.+|+.....||+||..+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C--------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 46899999998764 2 248999999999999999888999999875
No 258
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=6.9e-07 Score=87.68 Aligned_cols=43 Identities=30% Similarity=0.893 Sum_probs=39.1
Q ss_pred cccccccccccccCcEEccCCCc-ccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHS-FCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~-fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
++..|+||++.+.+|+.+||||+ ||..|+..+ ..||.||..+.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 46799999999999999999999 999999876 67999999874
No 259
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.08 E-value=5.8e-07 Score=71.29 Aligned_cols=45 Identities=33% Similarity=0.636 Sum_probs=37.0
Q ss_pred cccccccccccccCcEEc---cCCCcccHhhHHHhhhc----C----CCCcc--cccc
Q 011861 201 DDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQSMDR----G----NKCPL--CRAV 245 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~---~cgh~fC~~Cl~~~~~~----~----~~Cp~--cr~~ 245 (476)
..++|+||++.+..|..+ +|||+||..|+.+++.. + ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 477999999999888653 79999999999988752 2 25999 9886
No 260
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.05 E-value=3.2e-06 Score=80.72 Aligned_cols=97 Identities=8% Similarity=-0.021 Sum_probs=86.0
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
.-....|..+...|+|++|...|..++...|++. .++.+|.++++.++| ++|+..+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~-----------------------~dA~~~l 158 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW-----------------------TDVIDQV 158 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 4455678889999999999999999999999998 999999999999999 9999999
Q ss_pred HHHhhcc-ccc-hHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 128 EKLLNLQ-SNS-MKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 128 ~~al~l~-p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
+++.... |.. ..+++.+|.++..+|++++|+..|.+++..+
T Consensus 159 ~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 159 KSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 9888764 322 4589999999999999999999999998543
No 261
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=6.6e-06 Score=68.18 Aligned_cols=110 Identities=11% Similarity=0.042 Sum_probs=92.0
Q ss_pred HHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc-c-
Q 011861 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-S- 135 (476)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p- 135 (476)
........+...|.+++..++....+.++.|.++.+..+. ..+.+++..++..+.-+ |
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~--------------------~d~~~GI~lLe~l~~~~~p~ 71 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN--------------------DDIRKGIVLLEELLPKGSKE 71 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH--------------------HHHHHHHHHHHHHTTTSCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH--------------------HHHHHHHHHHHHHHhcCCcc
Confidence 3445567778888888888888889999999999875544 23367999999999987 6
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
..-..+|.+|.+++.+|+|+.|+..+...|+.+|+|..+......+++++..
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999999999999998888887776653
No 262
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.02 E-value=4.1e-06 Score=91.00 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCCcccccccccccccCcEEccCC-CcccHhhHHHhhhcCCCCcccccccccCCCCcccchhHHHHHHHhCchHHh
Q 011861 197 PERTDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLFITPRTCAVSVTLNSIIQKNFPEEYA 272 (476)
Q Consensus 197 ~~~~~~~~C~iC~~~~~~P~~~~cg-h~fC~~Cl~~~~~~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~~~~~~~~ 272 (476)
...+++|.|||..++|.+||+++.| ++|.+.+|.+|+..+..||..|+++.. ..+.+|..|++.|++|..+...
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~--~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL--EDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG--GGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc--ccccccHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999998 699999999999988899999999843 5788999999999999765443
No 263
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=6e-06 Score=63.06 Aligned_cols=49 Identities=27% Similarity=0.549 Sum_probs=40.6
Q ss_pred CCcccccccccccc--cCcEEccCC-----CcccHhhHHHhhhcC--CCCcccccccc
Q 011861 199 RTDDFDCTLCLKLL--YEPITTPCG-----HSFCRSCLFQSMDRG--NKCPLCRAVLF 247 (476)
Q Consensus 199 ~~~~~~C~iC~~~~--~~P~~~~cg-----h~fC~~Cl~~~~~~~--~~Cp~cr~~~~ 247 (476)
..+...|.||++.+ .+++.+||. |.|+..||.+|+... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34566899999876 467888996 999999999999854 47999999874
No 264
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.96 E-value=8.5e-06 Score=80.45 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=89.2
Q ss_pred hHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc------ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 46 HVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 46 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
.+..+...|..++..|+|++|+..|.+++.+.|... .++.++|.++...|++
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~---------------------- 109 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL---------------------- 109 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH----------------------
Confidence 455677889999999999999999999999876543 3367899999999999
Q ss_pred HHHHHHHHHHHhhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCC
Q 011861 120 AELALKDAEKLLNLQ--------SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 120 ~~~a~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~ 171 (476)
++|+..+++++++. |....++..+|.++...|++++|...+.+++.+.+..
T Consensus 110 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 110 -QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp -HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 99999999999986 3456688889999999999999999999999987754
No 265
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.89 E-value=1.5e-05 Score=64.07 Aligned_cols=83 Identities=13% Similarity=-0.047 Sum_probs=72.1
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc-------ccchHHHHHHHHHHHhhhhH
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ-------SNSMKSHLLKANALILLERY 154 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-------p~~~~~~~~~~~~~~~~~~~ 154 (476)
.-.+.+|..+++.++| ..|+.-++.|++.. +.....+..+|.++..+|++
T Consensus 6 ~dc~~lG~~~~~~~~y-----------------------~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 6 EDCFELGKVAYTEADY-----------------------YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccch-----------------------HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH
Confidence 3456789999999999 99999999999874 34677899999999999999
Q ss_pred HHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 155 DMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 155 ~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+.|+..++++++++|++..+..++..+++.+..
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~~ 95 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHHh
Confidence 999999999999999999988777777665544
No 266
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.88 E-value=1.4e-05 Score=63.11 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=64.2
Q ss_pred hhHHHHHHhhHHHHHhcc---HHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 45 THVFDLVQKGNRAFRESN---FEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~---~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.++..+...|+.++..++ ..+|...+.+|++++|+++.+++.+|..+++.|+| +
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-----------------------~ 60 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-----------------------Q 60 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------H
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-----------------------H
Confidence 346778889999986665 79999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccccc
Q 011861 122 LALKDAEKLLNLQSNS 137 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~ 137 (476)
+|+..++++++.+|..
T Consensus 61 ~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 61 EAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999999999984
No 267
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.87 E-value=1e-05 Score=76.76 Aligned_cols=88 Identities=24% Similarity=0.244 Sum_probs=80.5
Q ss_pred ccHHHHHHHHHHHhccCCC--CcccccchhHHHHHH-----HhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 61 SNFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRI-----SQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
+...+|...+.+|+++||+ +..+|..+|..|.+. |+. ++|.+.|++|+++
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~-----------------------ekA~~~ferAL~L 233 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM-----------------------EKAHTAFEHLTRY 233 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH-----------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH-----------------------HHHHHHHHHHHHh
Confidence 3457899999999999999 678999999999995 899 9999999999999
Q ss_pred cccc-hHHHHHHHHHHHh-hhhHHHHHHHHhcccccCCCC
Q 011861 134 QSNS-MKSHLLKANALIL-LERYDMARDAILSGLQVDPFS 171 (476)
Q Consensus 134 ~p~~-~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~l~p~~ 171 (476)
+|+. ...++..|..++. .|++++|...+++++..+|..
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9975 9999999999987 599999999999999998874
No 268
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=1.9e-05 Score=67.00 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=80.7
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHH----HHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.|..++..+.+++|+..|.+|.+. +++.+++++|.+|.. .+++ .+|+..++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-----------------------~~A~~~~~ 85 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL-----------------------RKAAQYYS 85 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH-----------------------HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH-----------------------HHHHHHHH
Confidence 677788888999999999999997 689999999999988 7788 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccC
Q 011861 129 KLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVD 168 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~ 168 (476)
+|.+. .++.+++.+|.+|.. .+++++|+..|+++.+..
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99887 689999999999998 899999999999998763
No 269
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.85 E-value=1.5e-05 Score=78.72 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=84.6
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccC--------CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIK--------PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
.+...|..++..|+|++|+..|.+++++. |....++.++|.+|...|++
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------------------- 151 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL----------------------- 151 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH-----------------------
Confidence 35667888999999999999999999975 33446788899999999999
Q ss_pred HHHHHHHHHHhhcccc-----chHHHHHHHHHHHhhhhHHHHHHHHhcccccC
Q 011861 121 ELALKDAEKLLNLQSN-----SMKSHLLKANALILLERYDMARDAILSGLQVD 168 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~ 168 (476)
++|...+++++++.+. ...++..+|.++...|++++|...+.+++.+.
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999998764 34678899999999999999999999998764
No 270
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=8.2e-05 Score=55.56 Aligned_cols=48 Identities=21% Similarity=0.512 Sum_probs=39.4
Q ss_pred CcccccccccccccCcEE-ccCCCcccHhhHHHhhhcC--CCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG--NKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~-~~cgh~fC~~Cl~~~~~~~--~~Cp~cr~~~~ 247 (476)
.....|.||...+..-.. ..|+|.|+..||.+|+... ..||.||..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345689999998874443 3899999999999999866 77999998763
No 271
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=3.8e-05 Score=79.47 Aligned_cols=105 Identities=8% Similarity=-0.077 Sum_probs=87.5
Q ss_pred CCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCC
Q 011861 39 LPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 110 (476)
Q Consensus 39 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 110 (476)
+.++....+..+...|..|..+|+|++|+.+|.+++.+ +|.-...+.|+|.+|..+|+|
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~------------- 409 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI------------- 409 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-------------
Confidence 34445556677788899999999999999999999987 333348899999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhc-----cccch---HHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 111 LNGLDPTTHAELALKDAEKLLNL-----QSNSM---KSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l-----~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
++|+..+++|+++ .|+++ +....++.++..++.|.+|...|.++.+
T Consensus 410 ----------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 410 ----------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 35554 4667899999999999999999988754
No 272
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.64 E-value=4.6e-05 Score=78.56 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=55.3
Q ss_pred HHHhhHHHHHhc---cHHHHHHHHHHHhccCCCCcccccchhHHHHH----HHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 50 LVQKGNRAFRES---NFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 50 ~~~~g~~~~~~~---~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
+...|..++..| ++++|+..|.+|++. +++.+++++|.+|.. .+++ ++
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-----------------------~~ 385 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE-----------------------QQ 385 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-----------------------HH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-----------------------HH
Confidence 334444444433 566666666666655 355666666666655 4555 66
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccCC
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDP 169 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p 169 (476)
|+..+++|++.+ ++.+++.+|.+|.. .+++++|...|+++++.+|
T Consensus 386 A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 386 AAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 666666666543 45666666666665 5666666666666666663
No 273
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.61 E-value=6.2e-05 Score=64.58 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=68.8
Q ss_pred HHHHHHhhHHHHHhc---cHHHHHHHHHHHhccC-C-CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 47 VFDLVQKGNRAFRES---NFEEAISNYSRANNIK-P-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~---~~~~Ai~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.+..++.|..+.+.+ +.++||..+.+.++.+ | ++.++++++|.+|+++++| .
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y-----------------------~ 88 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-----------------------E 88 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH-----------------------H
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH-----------------------H
Confidence 455667777888766 8889999999999998 7 5689999999999999999 9
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHH
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~~ 148 (476)
+|.+.++++++++|+|.++...+..+-
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999988877665554
No 274
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.55 E-value=0.00011 Score=75.07 Aligned_cols=103 Identities=11% Similarity=-0.043 Sum_probs=77.6
Q ss_pred HHHHhhHHHHHhc---cHHHHHHHHHHHhccCCCCcccccchhHHHHHH----HhhhccCCCCCcccCCCCCCCCcchHH
Q 011861 49 DLVQKGNRAFRES---NFEEAISNYSRANNIKPGDPIVLGNRSSAYIRI----SQFLKHRPPSASEYRPLNGLDPTTHAE 121 (476)
Q Consensus 49 ~~~~~g~~~~~~~---~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (476)
.+...|..+...| ++++|+..|.++.+..|.++..++++|.+|... +++ +
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~-----------------------~ 234 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE-----------------------K 234 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH-----------------------H
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH-----------------------H
Confidence 4566677777788 888888888888888888877778888887654 456 7
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHH-H--HhhhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 122 LALKDAEKLLNLQSNSMKSHLLKANA-L--ILLERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 122 ~a~~~~~~al~l~p~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
+|+..|+++. |+++.+++.+|.+ + ...+++++|+..|+++.+.+ +..+...+.
T Consensus 235 ~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg 290 (452)
T 3e4b_A 235 TAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 8888888887 7888888888887 4 46788888888888877543 455444443
No 275
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.54 E-value=0.0002 Score=69.18 Aligned_cols=100 Identities=9% Similarity=-0.037 Sum_probs=86.4
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCC--CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKP--GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
..+...|..++..|++++|+..+.+++..+| ++.+++...+.+|+++|+. +.|.+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~-----------------------d~A~k 157 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV-----------------------STAST 157 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH-----------------------HHHHH
Confidence 4456889999999999999999999999997 8889999999999999999 99999
Q ss_pred HHHHHhhcccc------chHHHHHHHHHHHhhh--hHHHHHHHHhcccccCCC
Q 011861 126 DAEKLLNLQSN------SMKSHLLKANALILLE--RYDMARDAILSGLQVDPF 170 (476)
Q Consensus 126 ~~~~al~l~p~------~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~l~p~ 170 (476)
.+++..+.+|+ .....+.-|++.+..| ++.+|...|++..+..|+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 99999999993 3334444465577667 999999999999888776
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.52 E-value=0.00015 Score=61.08 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=73.5
Q ss_pred CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc-cchHHHHHHHHHHHhhhhHHHH
Q 011861 79 GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS-NSMKSHLLKANALILLERYDMA 157 (476)
Q Consensus 79 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A 157 (476)
-.....++.|.++.+..+. ..+.+++..++..+.-+| ..-..+|.+|.+++.+|+|++|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~--------------------~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~A 96 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDV--------------------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMA 96 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSH--------------------HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCH--------------------HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHH
Confidence 3556777777777765543 233889999999998888 4667899999999999999999
Q ss_pred HHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 158 RDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 158 ~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
+.+....|+.+|+|..+......+++++..
T Consensus 97 r~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 97 KRYVDTLFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888877754
No 277
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.49 E-value=0.00016 Score=60.06 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcccc-chHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHHHHhhhh
Q 011861 121 ELALKDAEKLLNLQSN-SMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNLERTTAS 187 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~~~~~~~ 187 (476)
.+++..+...++.+|. .-..+|.+|.+++.+|+|+.|+......|+.+|+|..+......+++++..
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999988884 577899999999999999999999999999999999999888888887764
No 278
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.46 E-value=0.00026 Score=72.81 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=83.6
Q ss_pred hhHHHHHHhhHHHHH----hccHHHHHHHHHHHhccCCCCcccccchhHHHHH----HHhhhccCCCCCcccCCCCCCCC
Q 011861 45 THVFDLVQKGNRAFR----ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIR----ISQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~----~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
..+..+...|..++. .+++++|+..|.++.+. +++.+++.+|.+|.. .+++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~------------------- 95 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDY------------------- 95 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-------------------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-------------------
Confidence 346777888888888 89999999999999876 578889999999888 7788
Q ss_pred cchHHHHHHHHHHHhhccccchHHHHHHHHHHHh----hhhHHHHHHHHhcccccCCCCchhhH
Q 011861 117 TTHAELALKDAEKLLNLQSNSMKSHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
++|+..+++|.+. +++.+++.+|.+|.. .+++++|+..|+++.+. .+..+..
T Consensus 96 ----~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 151 (490)
T 2xm6_A 96 ----AQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ 151 (490)
T ss_dssp ----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred ----HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 8999999998765 578888999998887 78899999999988764 3444433
No 279
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.45 E-value=0.00025 Score=80.35 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=82.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
...+...|+.++..|+|++|+.+|++| ..|..+|.+|.++|++ ++|++.
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~-----------------------q~AIEa 1243 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-----------------------QAAVDG 1243 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCH-----------------------HHHHHH
Confidence 346778999999999999999999996 5899999999999999 999999
Q ss_pred HHHHhhccc-------------------------cchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 127 AEKLLNLQS-------------------------NSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 127 ~~~al~l~p-------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+++|....+ .++.-+..++..|...|.|++|+..+++++.+++.+......+..+
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 999855433 1333445666667788999999999999999988777666444433
No 280
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.43 E-value=0.0003 Score=71.92 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=82.2
Q ss_pred HHhhHHHHHh----ccHHHHHHHHHHHhccCCCCcccccchhHHHH---HHHhhhccCCCCCcccCCCCCCCCcchHHHH
Q 011861 51 VQKGNRAFRE----SNFEEAISNYSRANNIKPGDPIVLGNRSSAYI---RISQFLKHRPPSASEYRPLNGLDPTTHAELA 123 (476)
Q Consensus 51 ~~~g~~~~~~----~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 123 (476)
...|..|... +++++|+..|.++. |+++.+++++|.+|+ ..+++ ++|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~-----------------------~~A 270 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV-----------------------EQM 270 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH-----------------------HHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH-----------------------HHH
Confidence 4455556544 79999999999998 999999999999944 56677 999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHhhh-----hHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 124 LKDAEKLLNLQSNSMKSHLLKANALILLE-----RYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 124 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
+..+++|.+. +++.+++.+|.+|. .| ++++|+..|+++. +.+..+...+..+
T Consensus 271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 271 MKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 9999999865 48999999999998 55 9999999999998 7777776655544
No 281
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.42 E-value=0.00025 Score=61.30 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=78.3
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc---------cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcch
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI---------VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTH 119 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (476)
.+++....++..|.|+.|+..++.++.+..+++. ++...|.+++..++|
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey---------------------- 79 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY---------------------- 79 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH----------------------
Confidence 3677888999999999999999998887655544 788999999999999
Q ss_pred HHHHHHHHHHHhhccc---cc----------------------hHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 120 AELALKDAEKLLNLQS---NS----------------------MKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 120 ~~~a~~~~~~al~l~p---~~----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
.+|...|++|+.+.. ++ .+..|..|.||..+|++.+|+..++..
T Consensus 80 -rrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 80 -RNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -HHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 999999999877531 11 257799999999999999999988865
No 282
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.40 E-value=0.00016 Score=73.04 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=61.4
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.+..-|..++..|+|++|+.+|+++ ..|..+|.++.++|+| ++|++.++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y-----------------------q~AVea~~ 172 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY-----------------------QAAVDGAR 172 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH-----------------------HHHHHHHH
Confidence 6778888889999999999999876 5788889999999999 88888888
Q ss_pred HHhhccccchHHHHH------------------------------HHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 129 KLLNLQSNSMKSHLL------------------------------KANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 129 ~al~l~p~~~~~~~~------------------------------~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
+|- +++.|.. +...|...|++++|+..+++++.+++.+-.+...+
T Consensus 173 KA~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel 247 (449)
T 1b89_A 173 KAN-----STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 247 (449)
T ss_dssp HHT-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HcC-----CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 882 3332222 33556677888888888888888887776665555
Q ss_pred HH
Q 011861 179 QN 180 (476)
Q Consensus 179 ~~ 180 (476)
..
T Consensus 248 ~i 249 (449)
T 1b89_A 248 AI 249 (449)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 283
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.35 E-value=0.00025 Score=68.50 Aligned_cols=98 Identities=11% Similarity=-0.017 Sum_probs=82.5
Q ss_pred hhHHHHHhc--cHHHHHHHHHHHhccCCC--CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 53 KGNRAFRES--NFEEAISNYSRANNIKPG--DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 53 ~g~~~~~~~--~~~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
.|...+..| ++++|+..|+++....|+ .+..+.+ ++.++|+| ++|.+.++
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~-----------------------~eAe~~L~ 235 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNI-----------------------AEAQGIVE 235 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCH-----------------------HHHHHHHH
Confidence 454566666 999999999999998886 3445555 89999999 99999999
Q ss_pred HHhhc----------cccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 129 KLLNL----------QSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 129 ~al~l----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
++++. +|+++.++.++..+...+|+ +|...+.++.+.+|+++.+....
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 88877 58899999999888888887 89999999999999999876543
No 284
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.00026 Score=59.72 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=73.3
Q ss_pred hccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 60 ESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.+|+++|+..|.++.+.. ++.+. +|.+|...+.. ++|+..+++|.+. .++.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~-----------------------~~A~~~~~~Aa~~--g~~~ 58 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINK-----------------------QKLFQYLSKACEL--NSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCH-----------------------HHHHHHHHHHHHT--TCHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCH-----------------------HHHHHHHHHHHcC--CCHH
Confidence 468999999999999987 44444 88888777777 8899999999987 6899
Q ss_pred HHHHHHHHHHh----hhhHHHHHHHHhcccccCCCCchhhHHHH
Q 011861 140 SHLLKANALIL----LERYDMARDAILSGLQVDPFSNPLQASLQ 179 (476)
Q Consensus 140 ~~~~~~~~~~~----~~~~~~A~~~~~~~l~l~p~~~~~~~~~~ 179 (476)
+++.+|.+|.. .+++++|+..|+++.+. .++.+...+.
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg 100 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILG 100 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence 99999999998 89999999999999876 3444444433
No 285
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00057 Score=68.42 Aligned_cols=102 Identities=9% Similarity=0.043 Sum_probs=73.7
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC--------------------------------------------
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD-------------------------------------------- 80 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~-------------------------------------------- 80 (476)
....++...|..|+..|+|++|+..|.+++.+.+..
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 344567778888888888888888888776653321
Q ss_pred --cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc------cccchHHHHHHHHHHHhhh
Q 011861 81 --PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL------QSNSMKSHLLKANALILLE 152 (476)
Q Consensus 81 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~~~~~~~~~~ 152 (476)
..++.++|.+|...|+| .+|+..+.+++.. .+....++...|.+|..+|
T Consensus 133 ~~~~~~~~la~~~~~~g~~-----------------------~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQY-----------------------KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR 189 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCh-----------------------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 13555677778888888 8888888777765 2344567888888888888
Q ss_pred hHHHHHHHHhcccccCC
Q 011861 153 RYDMARDAILSGLQVDP 169 (476)
Q Consensus 153 ~~~~A~~~~~~~l~l~p 169 (476)
+|++|...+++++.+.+
T Consensus 190 ~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 190 NLAKSKASLTAARTAAN 206 (434)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhh
Confidence 88888888888876654
No 286
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00039 Score=69.63 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=67.4
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc-----------------cccchhHHHHHHHhhhccCCCCCcccCCC
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI-----------------VLGNRSSAYIRISQFLKHRPPSASEYRPL 111 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 111 (476)
...++|+.++..|+|++|++.|.++++.+|+... ++.++|.+|...|+|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~-------------- 71 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK-------------- 71 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH--------------
Confidence 4677899999999999999999999999988754 367789999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhccccchH------HHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 112 NGLDPTTHAELALKDAEKLLNLQSNSMK------SHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
++|++.+.+++.+.+...+ .+..+|.++...|+++.|+..++.++.
T Consensus 72 ---------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 72 ---------DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE 123 (434)
T ss_dssp ---------HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888776544322 122233333344444444444444443
No 287
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.08 E-value=0.00047 Score=78.19 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=59.6
Q ss_pred CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHH
Q 011861 78 PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMA 157 (476)
Q Consensus 78 p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A 157 (476)
.+.+.+|+++|.++...|++ ++|+..|.+| +++.+|.+.|.++..+|+|++|
T Consensus 1102 vn~p~vWsqLAKAql~~G~~-----------------------kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMV-----------------------KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCH-----------------------HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHH
Confidence 46789999999999999999 9999999887 8899999999999999999999
Q ss_pred HHHHhcccccCCC
Q 011861 158 RDAILSGLQVDPF 170 (476)
Q Consensus 158 ~~~~~~~l~l~p~ 170 (476)
+..|..+.+.+++
T Consensus 1154 IeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1154 VKYLQMARKKARE 1166 (1630)
T ss_pred HHHHHHHHhhccc
Confidence 9999998887744
No 288
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.01 E-value=0.0021 Score=61.01 Aligned_cols=121 Identities=11% Similarity=-0.023 Sum_probs=84.0
Q ss_pred hhHHHHHHhhHHHHH------hccHHHHHHH-----HHHHhc-cCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCC
Q 011861 45 THVFDLVQKGNRAFR------ESNFEEAISN-----YSRANN-IKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLN 112 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~------~~~~~~Ai~~-----y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 112 (476)
.++..++.+|..|-. ...|.+++.. +.+++. .+|+++.+++-.|.+....-.- ...
T Consensus 104 ~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~------------~~g 171 (301)
T 3u64_A 104 SRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFAL------------TPL 171 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTT------------SCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhc------------CCC
Confidence 345666666665521 1344444432 334433 4777888877777776442111 023
Q ss_pred CCCCcchHHHHHHHHHHHhhcccc--chHHHHHHHHHHHh-----hhhHHHHHHHHhcccccCCCC-chhhHH
Q 011861 113 GLDPTTHAELALKDAEKLLNLQSN--SMKSHLLKANALIL-----LERYDMARDAILSGLQVDPFS-NPLQAS 177 (476)
Q Consensus 113 ~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~l~l~p~~-~~~~~~ 177 (476)
+..+-.+++.|...+++|+++||+ +..+|..+|..|.. .|+.+.|..+|+++++++|+. ......
T Consensus 172 g~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~ 244 (301)
T 3u64_A 172 GSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT 244 (301)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred ChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 455666779999999999999999 56699999999988 599999999999999999975 555443
No 289
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.99 E-value=0.00051 Score=49.08 Aligned_cols=47 Identities=28% Similarity=0.479 Sum_probs=37.9
Q ss_pred cccccccccccccCcEEccCCC-----cccHhhHHHhhhc--CCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGH-----SFCRSCLFQSMDR--GNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh-----~fC~~Cl~~~~~~--~~~Cp~cr~~~~ 247 (476)
+...|.||+....++...||.+ .|+..||.+|+.. ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999998877777778653 7999999999973 467999998763
No 290
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.89 E-value=0.00027 Score=67.85 Aligned_cols=48 Identities=23% Similarity=0.668 Sum_probs=37.6
Q ss_pred CcccccccccccccC----cE----EccCCCcccHhhHHHhhhcC-----------CCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYE----PI----TTPCGHSFCRSCLFQSMDRG-----------NKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~----P~----~~~cgh~fC~~Cl~~~~~~~-----------~~Cp~cr~~~~ 247 (476)
.....|+||+..+.+ |- ...|||.|+..||.+|+... ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456689999998776 31 23799999999999999731 24999999874
No 291
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.70 E-value=0.001 Score=51.79 Aligned_cols=43 Identities=26% Similarity=0.559 Sum_probs=33.8
Q ss_pred ccccccccccCc-EEccCCCcccHhhHHHhhh-cCCCCccccccc
Q 011861 204 DCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMD-RGNKCPLCRAVL 246 (476)
Q Consensus 204 ~C~iC~~~~~~P-~~~~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~ 246 (476)
.|+.|.-.+..- ..+||.|.||..|+..|.. +.+.||.|+.++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 477777655543 4579999999999999875 456799999876
No 292
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.67 E-value=0.0022 Score=63.21 Aligned_cols=91 Identities=10% Similarity=-0.030 Sum_probs=71.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+.-.|..++..|++++|+..+++|+.++|+ ..+|..+|.++...|++ ++|++.+
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~-----------------------~eA~e~~ 333 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMN-----------------------REAADAY 333 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCH-----------------------HHHHHHH
Confidence 34444566677889999999999999999974 67788999999999999 9999999
Q ss_pred HHHhhccccchHHHHHHHHHH-HhhhhHHHHHHHHh
Q 011861 128 EKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAIL 162 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 162 (476)
.+|+.++|.....++..+.++ ..+....-++..|.
T Consensus 334 ~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 334 LTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFL 369 (372)
T ss_dssp HHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHHH
T ss_pred HHHHhcCCCcChHHHHhCceeecchhhhHHHHHhcc
Confidence 999999998865444444443 35666666665553
No 293
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.0025 Score=64.72 Aligned_cols=91 Identities=14% Similarity=0.031 Sum_probs=71.9
Q ss_pred CCCCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCccc
Q 011861 37 GSLPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEY 108 (476)
Q Consensus 37 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 108 (476)
..+.+.....+..+...|..|..+|+|++|+.+|.+++.+ +|.-...+.++|.+|..+|++
T Consensus 319 ~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~----------- 387 (429)
T 3qwp_A 319 ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF----------- 387 (429)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH-----------
T ss_pred CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCH-----------
Confidence 4455666667788888999999999999999999999976 333347899999999999999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhc-----cccchH---HHHHHHHHHHh
Q 011861 109 RPLNGLDPTTHAELALKDAEKLLNL-----QSNSMK---SHLLKANALIL 150 (476)
Q Consensus 109 ~~~~~~~~~~~~~~a~~~~~~al~l-----~p~~~~---~~~~~~~~~~~ 150 (476)
++|+..+++|+++ .|+++. .+..++.+...
T Consensus 388 ------------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 388 ------------PQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999986 355543 44455555543
No 294
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.47 E-value=0.0046 Score=62.45 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=85.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchh------------------------------HHHHHHHh
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRS------------------------------SAYIRISQ 96 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a------------------------------~~~~~~~~ 96 (476)
+..+...|..+++.|+|++|++.|.+| +++..|.... ..|.+.|+
T Consensus 148 a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 148 VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 222 (449)
T ss_dssp TTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCC
Confidence 344556788899999999999999999 2444444433 45566666
Q ss_pred hhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHH--HhhhhHHHHHHHHhcccccCC-----
Q 011861 97 FLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANAL--ILLERYDMARDAILSGLQVDP----- 169 (476)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~l~p----- 169 (476)
| ++|+..+++++.+++.+...+..+|.+| +..++..++++.|...+.+.|
T Consensus 223 ~-----------------------eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 223 F-----------------------EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp H-----------------------HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred H-----------------------HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 6 9999999999999999999999999888 579999999999999999888
Q ss_pred CCchhhHHHHHH
Q 011861 170 FSNPLQASLQNL 181 (476)
Q Consensus 170 ~~~~~~~~~~~~ 181 (476)
.+..++..+--+
T Consensus 280 ~~~~~w~e~~~l 291 (449)
T 1b89_A 280 EQAHLWAELVFL 291 (449)
T ss_dssp HTTTCHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667666554433
No 295
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.34 E-value=0.0023 Score=64.96 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=65.0
Q ss_pred CCchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc--------CCCCcccccchhHHHHHHHhhhccCCCCCcccCC
Q 011861 39 LPWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI--------KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRP 110 (476)
Q Consensus 39 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 110 (476)
+.++....+..+...|..|..+|+|++|+.+|.+++++ +|+-...+.|+|.+|..+|+|
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~------------- 398 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK------------- 398 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH-------------
Confidence 44455556777888899999999999999999999977 334458899999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhcc-----ccchH
Q 011861 111 LNGLDPTTHAELALKDAEKLLNLQ-----SNSMK 139 (476)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~al~l~-----p~~~~ 139 (476)
++|+..+++|+++- |+++.
T Consensus 399 ----------~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 399 ----------AAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred ----------HHHHHHHHHHHHHHHHHcCCCChH
Confidence 99999999999863 66654
No 296
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.08 E-value=0.01 Score=48.97 Aligned_cols=78 Identities=13% Similarity=-0.012 Sum_probs=63.3
Q ss_pred HHHHHhhHHHHHhccH---HHHHHHHHHHhccC-C-CCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHH
Q 011861 48 FDLVQKGNRAFRESNF---EEAISNYSRANNIK-P-GDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAEL 122 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~---~~Ai~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (476)
...+..|..+.+..+- .++|..+...++.+ | ..-++++.+|.+|+++|+| .+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y-----------------------~~ 92 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY-----------------------EK 92 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH-----------------------HH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH-----------------------HH
Confidence 4445556666655544 44999999999987 5 4569999999999999999 99
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHH
Q 011861 123 ALKDAEKLLNLQSNSMKSHLLKANAL 148 (476)
Q Consensus 123 a~~~~~~al~l~p~~~~~~~~~~~~~ 148 (476)
|.+.++..|+++|+|.+|...+..+-
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998877666554
No 297
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.85 E-value=0.033 Score=55.57 Aligned_cols=101 Identities=17% Similarity=0.035 Sum_probs=83.5
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc----------------------ccccchhHHHHHHHhhhcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP----------------------IVLGNRSSAYIRISQFLKH 100 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~~ 100 (476)
.......+...|......|+.+.|+..+.+|+.+-...+ .+...++.++...|++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~--- 187 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA--- 187 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH---
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---
Confidence 344556777888888889999999999999999853321 2333466777788888
Q ss_pred CCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 101 RPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
.+++..+..++..+|-+-.+|..+..+|+..|+..+|+..|.++-+
T Consensus 188 --------------------~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 --------------------SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp --------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887643
No 298
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.82 E-value=0.011 Score=49.02 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=73.5
Q ss_pred ccccccCCCCCCchhhhhHHHHH--------------HhhHHHHHh---ccHHHHHHHHHHHhccCCC-CcccccchhHH
Q 011861 29 YIWANEGEGSLPWDRYTHVFDLV--------------QKGNRAFRE---SNFEEAISNYSRANNIKPG-DPIVLGNRSSA 90 (476)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~---~~~~~Ai~~y~~al~~~p~-~~~~~~~~a~~ 90 (476)
++.+.+...++++++....+..+ .-|..+.+. .+..++|..+...++.+|. .-+.++.+|.+
T Consensus 8 ~p~~~~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg 87 (134)
T 3o48_A 8 WPTLKDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG 87 (134)
T ss_dssp CCCTTGGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 44455555666676655544333 223333333 4667899999999998884 46999999999
Q ss_pred HHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 011861 91 YIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALI 149 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~ 149 (476)
|+++|+| .+|.+.++..+++.|+|.+|...+..+--
T Consensus 88 ~yklgdY-----------------------~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 88 CYKLGEY-----------------------SMAKRYVDTLFEHERNNKQVGALKSMVED 123 (134)
T ss_dssp HHHHTCH-----------------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhhH-----------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 9999999 99999999999999999988777666543
No 299
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.78 E-value=0.029 Score=47.09 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHhccCCC-CcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchH
Q 011861 61 SNFEEAISNYSRANNIKPG-DPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMK 139 (476)
Q Consensus 61 ~~~~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~ 139 (476)
.+-.++|..+...++..|. .-+.++.+|.+|+++|+| .+|.+.++..++++|+|.+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y-----------------------~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-----------------------SMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH-----------------------HHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHhcCCCcHH
Confidence 4556899999999998884 459999999999999999 9999999999999999988
Q ss_pred HHHHHHHHH
Q 011861 140 SHLLKANAL 148 (476)
Q Consensus 140 ~~~~~~~~~ 148 (476)
+...+..+-
T Consensus 113 A~~Lk~~Ie 121 (144)
T 1y8m_A 113 VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=95.16 E-value=0.57 Score=44.75 Aligned_cols=114 Identities=13% Similarity=0.020 Sum_probs=68.0
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc--------cc--ccchhHHH-----HHHHhhhccCCCCCcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IV--LGNRSSAY-----IRISQFLKHRPPSASE 107 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~--------~~--~~~~a~~~-----~~~~~~~~~~~~~~~~ 107 (476)
...........|-.++..|+|++|+..|..+|..-|-.. ++ +...+.=| +.+.+- .
T Consensus 110 ~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr--~------- 180 (325)
T 3mv2_A 110 GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERR--S------- 180 (325)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--T-------
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-------
Confidence 344455567789999999999999999999987643211 11 11111111 111111 0
Q ss_pred cCCCCCCCCcchHHHHH--HHHHHHhhccccchHHHHHHHHHH-HhhhhHHHHHHHHhcccccCCCCc
Q 011861 108 YRPLNGLDPTTHAELAL--KDAEKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 108 ~~~~~~~~~~~~~~~a~--~~~~~al~l~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
.+ .+...+.+ ..|=-...+.|.+...-++.|+.. +..++|.-|....++.|+++|..+
T Consensus 181 ------l~-~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 181 ------LK-EGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp ------CC-TTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred ------cC-cccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 00 01112221 222234455676666666777665 689999999999999999998643
No 301
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.00 E-value=0.71 Score=44.04 Aligned_cols=113 Identities=17% Similarity=0.080 Sum_probs=67.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc--------ccc--cchhHHH-----HHHHhhhccCCCCCcccC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP--------IVL--GNRSSAY-----IRISQFLKHRPPSASEYR 109 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~--------~~~--~~~a~~~-----~~~~~~~~~~~~~~~~~~ 109 (476)
.........|-.++..|++++|+..|..+|..-|--. ++. ...+.=| +.+.+- .
T Consensus 100 ~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr--~--------- 168 (320)
T 3mkr_B 100 NDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERK--K--------- 168 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T---------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h---------
Confidence 3455567889999999999999999999988754211 111 1111111 112111 0
Q ss_pred CCCCCCCcchHHHH--HHHHHHHhhccccchHHHHHHHHHH-HhhhhHHHHHHHHhcccccCCC
Q 011861 110 PLNGLDPTTHAELA--LKDAEKLLNLQSNSMKSHLLKANAL-ILLERYDMARDAILSGLQVDPF 170 (476)
Q Consensus 110 ~~~~~~~~~~~~~a--~~~~~~al~l~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~l~p~ 170 (476)
+ +....+..... +..|=-...+.|.+...-++.|+.. +..++|.-|....++.|++.|.
T Consensus 169 -l-~~~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 169 -L-PKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp -S-CCCSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred -c-ccCCchhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 0 00000111111 2222234456677766666777665 6899999999999999999875
No 302
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.68 E-value=0.063 Score=57.54 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=83.9
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhcc-CCCCcccccchhHHHHHHHh-hhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNI-KPGDPIVLGNRSSAYIRISQ-FLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
+...++..-+.|+.+.|.+.|.+|++. .+....+|...|..-.+.++ + +.|-+.|
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~-----------------------e~Ar~if 493 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT-----------------------KTACKVL 493 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC-----------------------HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH-----------------------HHHHHHH
Confidence 444455555678999999999999998 44456677665555555544 6 8999999
Q ss_pred HHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCC---CchhhHHHHHHHH
Q 011861 128 EKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPF---SNPLQASLQNLER 183 (476)
Q Consensus 128 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~---~~~~~~~~~~~~~ 183 (476)
+++++..|+++..+...+......|+.+.|+..|++++...|+ ...+.......+.
T Consensus 494 e~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 494 ELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999888877788778899999999999999998874 3334444444443
No 303
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.28 E-value=0.086 Score=56.51 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=78.9
Q ss_pred HHHhhHHHHHhccHHHHH-HHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAI-SNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai-~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
+...|+-....|+.++|+ ..|.+|+...|.+..+|...|....+.|++ ++|-+.|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~-----------------------e~aR~iye 402 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI-----------------------PEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-----------------------HHHHHHHH
Confidence 444556566778889998 999999999999999999999999999999 99999999
Q ss_pred HHhhcc-----------cc-----------chHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 129 KLLNLQ-----------SN-----------SMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 129 ~al~l~-----------p~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++++.- |. ....|...+......|..+.|++.|.+|++.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998752 42 3446666777777889999999999999886
No 304
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.59 E-value=0.034 Score=42.44 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=37.4
Q ss_pred CcccccccccccccCcEEccCC-CcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCG-HSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cg-h~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
-.-+.|..|+...+. .+.|. |..|..|+...+..+..||+|..++.
T Consensus 26 ~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 345789999976664 56676 77799999998889999999999873
No 305
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.58 E-value=0.051 Score=50.18 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=37.3
Q ss_pred cccccccccccccCcEE-ccCCCcccHhhHHHhhhcC--CCCccccccc
Q 011861 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRSCLFQSMDRG--NKCPLCRAVL 246 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~-~~cgh~fC~~Cl~~~~~~~--~~Cp~cr~~~ 246 (476)
....|.+|..+...-.. -+|++.|+..|+..|+... ..||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 36689999998875543 3599999999999998754 4799999876
No 306
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.40 E-value=0.031 Score=44.15 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=26.6
Q ss_pred ccccccccccc-ccCcEE--ccCCCcccHhhHHH
Q 011861 201 DDFDCTLCLKL-LYEPIT--TPCGHSFCRSCLFQ 231 (476)
Q Consensus 201 ~~~~C~iC~~~-~~~P~~--~~cgh~fC~~Cl~~ 231 (476)
++..|++|.+. ...|+. ++|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35789999975 677877 89999999999997
No 307
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.27 E-value=0.16 Score=43.82 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=43.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccC---CCC----------------------cccccchhHHHHHHHhh
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIK---PGD----------------------PIVLGNRSSAYIRISQF 97 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~---p~~----------------------~~~~~~~a~~~~~~~~~ 97 (476)
.+++.+.-.|+.+|.+++|.+|...|.+||+.. ++. .++.+..|.||.+++++
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 456778889999999999999999999997651 111 15778899999999999
No 308
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.03 E-value=0.33 Score=45.27 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=59.9
Q ss_pred hHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc
Q 011861 54 GNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 54 g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 133 (476)
....++.|+.+.|++.....++-+|.|+.....+.+.+.-.|+| ++|.+.++.+.++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w-----------------------~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF-----------------------ERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999 9999999999999
Q ss_pred cccchHH
Q 011861 134 QSNSMKS 140 (476)
Q Consensus 134 ~p~~~~~ 140 (476)
+|.....
T Consensus 61 ~p~~~~~ 67 (273)
T 1zbp_A 61 FPEYLPG 67 (273)
T ss_dssp CGGGHHH
T ss_pred CchhhHH
Confidence 9987553
No 309
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.15 E-value=0.24 Score=53.32 Aligned_cols=59 Identities=27% Similarity=0.222 Sum_probs=52.4
Q ss_pred cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHh
Q 011861 83 VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAIL 162 (476)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (476)
++.--|..+...|+| +-|++.+.+|+.+.|.....|+.++.+|..+|+|+.|+-.++
T Consensus 339 LL~~Qa~FLl~K~~~-----------------------elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 339 LLNIQTNFLLNRGDY-----------------------ELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcH-----------------------HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 444455666667788 999999999999999999999999999999999999999998
Q ss_pred cc
Q 011861 163 SG 164 (476)
Q Consensus 163 ~~ 164 (476)
.+
T Consensus 396 Sc 397 (754)
T 4gns_B 396 SM 397 (754)
T ss_dssp HS
T ss_pred cC
Confidence 87
No 310
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.21 Score=53.83 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=45.5
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (476)
-+..++.-+..+|+|+-|+.+..+|+...|.+...|+.+|.+|..+|+|
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence 3555777788999999999999999999999999999999999999999
No 311
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=89.11 E-value=2 Score=43.91 Aligned_cols=126 Identities=12% Similarity=-0.071 Sum_probs=65.1
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHH---HHHhhhccCCCCCcccCCC-CCCCC-------
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYI---RISQFLKHRPPSASEYRPL-NGLDP------- 116 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~------- 116 (476)
.-+...+.-....|+.++|...|.+|+.. |.+..++...+...- ..++..........+...+ ...+.
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 34555666677889999999999999999 998766654333200 0001100000000000000 00000
Q ss_pred ------cchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhh-hHHHHHHHHhcccccCCCCchhh
Q 011861 117 ------TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLE-RYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 117 ------~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
..-.+.|-..+.+| ...+.....|...|..-...+ +++.|+..|+.+++..|+++...
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 00115566666677 322223334444444444445 58888888888888777766543
No 312
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.78 E-value=1.6 Score=36.95 Aligned_cols=103 Identities=12% Similarity=-0.023 Sum_probs=74.3
Q ss_pred HHHHHhhHHHHHhccH------HHHHHHHHHHhccCCCCc--------ccccchhHHHHHHHhhhccCCCCCcccCCCCC
Q 011861 48 FDLVQKGNRAFRESNF------EEAISNYSRANNIKPGDP--------IVLGNRSSAYIRISQFLKHRPPSASEYRPLNG 113 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~------~~Ai~~y~~al~~~p~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (476)
+.++.-....-+.|+. ++-++.|.+|+..-|-.. -+|.+.|. +..+++.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~---------------- 76 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEP---------------- 76 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCG----------------
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCH----------------
Confidence 3344433334344666 888899999999876543 22233332 2445666
Q ss_pred CCCcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchh
Q 011861 114 LDPTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPL 174 (476)
Q Consensus 114 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~ 174 (476)
++|-..|+.++.+...+++.|...|+--...|+...|+..+.+++.+.|.....
T Consensus 77 -------d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 77 -------DDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp -------GGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred -------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 888899999999888887777777777789999999999999999988876543
No 313
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=87.28 E-value=3.3 Score=42.29 Aligned_cols=92 Identities=10% Similarity=-0.122 Sum_probs=69.5
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHH-hhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRIS-QFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
+..-++-..+.++.++|...|.+| +..+....+|...|..-...+ +. +.|...++
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~-----------------------~~ar~ife 344 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR-----------------------ATPYNIFS 344 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS-----------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh-----------------------HHHHHHHH
Confidence 444555555678899999999999 433334455655565555566 47 99999999
Q ss_pred HHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 129 KLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
.+++..|+.+..+...+.-....|+.+.|+..|.++.
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999989888766666666678999999999999983
No 314
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.08 E-value=0.58 Score=47.04 Aligned_cols=95 Identities=6% Similarity=-0.014 Sum_probs=73.9
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhccCCCC---cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNIKPGD---PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKD 126 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 126 (476)
+...|.-+++.||+++|++.|.++.....+. ..++.....+++..++| ..+...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~-----------------------~~~~~~ 190 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQ-----------------------LYVKEK 190 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCH-----------------------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH-----------------------HHHHHH
Confidence 4567888999999999999999998875543 36777788888889999 888888
Q ss_pred HHHHhhcc---ccc---hHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 127 AEKLLNLQ---SNS---MKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 127 ~~~al~l~---p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
+.++-.+- +++ .+.....|.+++..++|..|...|..++.-
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 88876552 222 123445677778999999999999887654
No 315
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.47 E-value=0.99 Score=44.75 Aligned_cols=92 Identities=12% Similarity=-0.033 Sum_probs=70.4
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCC--C----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPG--D----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
..|.-|+..|+|.+|+..+++..+...+ + .+++.....+|..++++ .++-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~-----------------------~k~k~ 160 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL-----------------------PKARA 160 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH-----------------------HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH-----------------------HHHHH
Confidence 4688899999999999999998875322 2 26778888999999999 88877
Q ss_pred HHHHHhhcc------cc-chHHHHHHHHHHH-hhhhHHHHHHHHhcccc
Q 011861 126 DAEKLLNLQ------SN-SMKSHLLKANALI-LLERYDMARDAILSGLQ 166 (476)
Q Consensus 126 ~~~~al~l~------p~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~ 166 (476)
.+.+|.... |. .......-|..++ ..++|..|...|-.+++
T Consensus 161 ~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 161 ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 777776543 21 2234446777788 89999999999988864
No 316
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.75 E-value=1.1 Score=41.77 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQA 176 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~ 176 (476)
+.|++.....++-+|.+......+-+.++-.|+|+.|...++.+.+++|.......
T Consensus 14 ~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~ 69 (273)
T 1zbp_A 14 QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69 (273)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999998776543
No 317
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=82.32 E-value=1.6 Score=44.67 Aligned_cols=61 Identities=10% Similarity=-0.205 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHHHHH
Q 011861 121 ELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASLQNL 181 (476)
Q Consensus 121 ~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~~~~ 181 (476)
..|...|.+|..++|++...|..+|......|++-+|+=+|.+++....-.+.+..++..+
T Consensus 169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 7899999999999999999999999999999999999999999987655555555544443
No 318
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=82.07 E-value=5.3 Score=40.84 Aligned_cols=89 Identities=9% Similarity=0.018 Sum_probs=68.8
Q ss_pred hhHHHHHhccHHHHHHHHHHHhcc--CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHH
Q 011861 53 KGNRAFRESNFEEAISNYSRANNI--KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKL 130 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 130 (476)
.-+.+.+.|++++|...|.+..+. .| +...|..+-.+|.+.|+. ++|.+.++..
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~-----------------------~~A~~l~~~M 166 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDA-----------------------DKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCH-----------------------HHHHHHHHHH
Confidence 345577889999999999888765 33 567777788888888998 8898888887
Q ss_pred hhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 131 LNLQ--SNSMKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 131 l~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
.+.. | +...|..+-.+|...|++++|...|.+.-+
T Consensus 167 ~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 167 VESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 6643 4 445677788888899999999988887543
No 319
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=80.09 E-value=3.5 Score=42.11 Aligned_cols=78 Identities=14% Similarity=0.015 Sum_probs=68.4
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHH
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAE 128 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (476)
-+.-.|...-.+..+..|..+|.+|+.+.|++...|..+|..+...|+. -.|+-.|.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~-----------------------l~a~y~y~ 210 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH-----------------------LTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH-----------------------HHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc-----------------------HHHHHHHH
Confidence 3455777777788899999999999999999999999999999999998 88999999
Q ss_pred HHhhccccchHHHHHHHHHHH
Q 011861 129 KLLNLQSNSMKSHLLKANALI 149 (476)
Q Consensus 129 ~al~l~p~~~~~~~~~~~~~~ 149 (476)
+++....-++.+.-++...+-
T Consensus 211 rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 211 RSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHhcCCCChhHHHHHHHHHH
Confidence 999887778888888877764
No 320
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.68 E-value=2.1 Score=42.22 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=54.6
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
..+...+..++..|++.+|+..+..++..+|-+-.+|..+-.+|...|+. .+|++.|
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~-----------------------~~Al~~y 228 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQ-----------------------SDALGAY 228 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------------HHHHHHH
Confidence 34455677788999999999999999999999999999999999999999 9999888
Q ss_pred HHHhh
Q 011861 128 EKLLN 132 (476)
Q Consensus 128 ~~al~ 132 (476)
++.-+
T Consensus 229 ~~~r~ 233 (388)
T 2ff4_A 229 RRVKT 233 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
No 321
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.83 E-value=1.4 Score=42.82 Aligned_cols=63 Identities=21% Similarity=0.420 Sum_probs=44.6
Q ss_pred cccccccccccccCcEE-ccCCCcccHh--hHHHhhh--cCCCCcccccccccCCCCcccchhHHHHHHH
Q 011861 201 DDFDCTLCLKLLYEPIT-TPCGHSFCRS--CLFQSMD--RGNKCPLCRAVLFITPRTCAVSVTLNSIIQK 265 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~-~~cgh~fC~~--Cl~~~~~--~~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~~ 265 (476)
-.+.|++....+..|+. ..|.|.-|.. -+..... ..-.||.|.+.+. ..++.++..+..++..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~--~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA--LENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC--GGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC--HHHeeEcHHHHHHHHh
Confidence 36799999999999987 5899985544 3333322 2345999998774 3678888777776643
No 322
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.17 E-value=2.4 Score=31.88 Aligned_cols=35 Identities=29% Similarity=0.262 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
....+|..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55678889999999999999999999999999875
No 323
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=75.51 E-value=3 Score=31.29 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=30.0
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
...+|..+..+|...=+.|+|++|+.+|.+|++.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999875
No 324
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=75.41 E-value=11 Score=32.69 Aligned_cols=22 Identities=5% Similarity=-0.136 Sum_probs=16.0
Q ss_pred HHHHHhhhhHHHHHHHHhcccc
Q 011861 145 ANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 145 ~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
..+++.+|+++++++.|.+.-.
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHCCC
Confidence 3456688888888888876543
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=75.32 E-value=8.1 Score=33.34 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=73.2
Q ss_pred HhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHh
Q 011861 52 QKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLL 131 (476)
Q Consensus 52 ~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 131 (476)
..+-.+|-.|.|.+|+-+... -+-....+..+.||.++++| ..|+...++.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdY-----------------------kkA~~~le~il 89 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDY-----------------------KKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 456677888999988876632 23446666788999999999 99999999988
Q ss_pred --hcc---------------ccchH-HHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhh
Q 011861 132 --NLQ---------------SNSMK-SHLLKANALILLERYDMARDAILSGLQVDPFSNPLQ 175 (476)
Q Consensus 132 --~l~---------------p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~ 175 (476)
+.+ |.+-+ -+..+|..+...|+-++|+.+|...+..+|-.+.+.
T Consensus 90 ~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 90 EGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp TTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 332 33333 445688999999999999999999998887665544
No 326
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.15 E-value=2.1 Score=41.55 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=44.1
Q ss_pred cccccccccccccCcEE-ccCCCccc--HhhHHHhhhc--CCCCcccccccccCCCCcccchhHHHHHH
Q 011861 201 DDFDCTLCLKLLYEPIT-TPCGHSFC--RSCLFQSMDR--GNKCPLCRAVLFITPRTCAVSVTLNSIIQ 264 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~-~~cgh~fC--~~Cl~~~~~~--~~~Cp~cr~~~~~~~~~~~~n~~l~~~~~ 264 (476)
-.+.|++....+..|+. ..|.|.-| ..-+.+...+ .-.||.|.+.+. ..++.++.-+..++.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~--~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA--YESLILDGLFMEILN 280 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC--GGGEEEBHHHHHHHT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC--HHHeEEcHHHHHHHH
Confidence 36789999999999987 59999844 4433333332 345999999874 367888877777664
No 327
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.08 E-value=3.1 Score=30.43 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcc
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGDPI 82 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~ 82 (476)
.-...|..++.+|++++|+.+|.+|+...|+=..
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4467899999999999999999999999986543
No 328
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=71.95 E-value=6.6 Score=33.19 Aligned_cols=61 Identities=7% Similarity=-0.086 Sum_probs=52.6
Q ss_pred HHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc
Q 011861 56 RAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS 135 (476)
Q Consensus 56 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 135 (476)
.+..-+|.++|...|+.++.++-..+.+|...|.--.+.|+. ..|.+.+.+|+.+.|
T Consensus 69 ~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl-----------------------~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 69 ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNV-----------------------KKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccH-----------------------HHHHHHHHHHhccCC
Confidence 335558999999999999998878888888888888888888 999999999999998
Q ss_pred cchH
Q 011861 136 NSMK 139 (476)
Q Consensus 136 ~~~~ 139 (476)
....
T Consensus 126 k~~~ 129 (161)
T 4h7y_A 126 VPLE 129 (161)
T ss_dssp BCHH
T ss_pred CcHH
Confidence 7633
No 329
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=69.72 E-value=5.1 Score=30.10 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=31.2
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
.....++..+..+|...=..|+|++|+.+|..|+++
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678889999999888999999999999999875
No 330
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.88 E-value=34 Score=25.61 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=26.8
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
...+..+..+|...=..|+|++|+.+|..|+++
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888888888899999999999777654
No 331
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.80 E-value=7.9 Score=31.10 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
....+|..+..+|...=..|+|++|+.+|..|+++
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46778889999999888999999999999999875
No 332
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=66.36 E-value=11 Score=38.27 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=68.4
Q ss_pred hccHHHHHHHHHHHhccC-CCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhc--ccc
Q 011861 60 ESNFEEAISNYSRANNIK-PGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNL--QSN 136 (476)
Q Consensus 60 ~~~~~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~ 136 (476)
.++.++|...|.+..+.. .-|...|..+..+|.+.|++ ++|.+.++...+. .|
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~-----------------------~~A~~l~~~M~~~g~~P- 138 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDP-----------------------EMAFDMVKQMKAFGIQP- 138 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCH-----------------------HHHHHHHHHHHHTTCCC-
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHHcCCCC-
Confidence 356789999999887652 22567888999999999999 9999999887664 34
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 137 SMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
+...|..+-.+|...|+.++|...|....+.
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5667888888999999999999999887653
No 333
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=64.54 E-value=44 Score=25.34 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=27.4
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
......+..+..+|...=..|+|++|+.+|..|+++
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 355667788888888888888888888888666554
No 334
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=64.48 E-value=6.9 Score=27.89 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=31.0
Q ss_pred CcccccccccccccCcEE--ccCCCcccHhhHHHhhhcC----CCCccccccc
Q 011861 200 TDDFDCTLCLKLLYEPIT--TPCGHSFCRSCLFQSMDRG----NKCPLCRAVL 246 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~--~~cgh~fC~~Cl~~~~~~~----~~Cp~cr~~~ 246 (476)
.....|.+|.+.-. +. -.|...|+..|+...+... -.||.|....
T Consensus 10 ~~~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34567999986422 33 2799999999997665533 3599997653
No 335
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=64.11 E-value=9 Score=40.62 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (476)
+.+...+|+..+..|+|.-|....+.++..+|++..+...+|.+|.++|--
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999999999999999888875
No 336
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.90 E-value=4.8 Score=31.01 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHhhHHHHHhccHHHHHHHHHHHhccCCCC
Q 011861 49 DLVQKGNRAFRESNFEEAISNYSRANNIKPGD 80 (476)
Q Consensus 49 ~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~ 80 (476)
.-+..|..++.+|+++.|+.+|.+|+..+|+=
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45679999999999999999999999998754
No 337
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.53 E-value=6.8 Score=29.51 Aligned_cols=45 Identities=22% Similarity=0.592 Sum_probs=32.2
Q ss_pred cccccccccccc-----CcEE--ccCCCcccHhhHHHhhh-cCCCCccccccc
Q 011861 202 DFDCTLCLKLLY-----EPIT--TPCGHSFCRSCLFQSMD-RGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~-----~P~~--~~cgh~fC~~Cl~~~~~-~~~~Cp~cr~~~ 246 (476)
.-.|.||.+.+- ++.. -.|+...|+.|.+--.. ....||.|+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 357999998643 2333 27888899999975444 455699998876
No 338
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.98 E-value=28 Score=34.78 Aligned_cols=98 Identities=11% Similarity=-0.048 Sum_probs=70.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc-CCCC-----cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI-KPGD-----PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHA 120 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (476)
++-....+..++..|+|.+|.........- .-.+ .+++..-...|+..++|
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~----------------------- 193 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY----------------------- 193 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH-----------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH-----------------------
Confidence 444455688999999999999999886532 1111 26777788888999999
Q ss_pred HHHHHHHHHHhh-c--ccc--ch--HHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 121 ELALKDAEKLLN-L--QSN--SM--KSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 121 ~~a~~~~~~al~-l--~p~--~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
.+|...+.++-. . .+. .. ..+...|..+...++|.+|..+|..+++.
T Consensus 194 ~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 194 SQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888777777532 1 122 22 34556778888999999999999988763
No 339
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=58.72 E-value=23 Score=37.62 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.3
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRA 73 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~a 73 (476)
..+...|+.+.+.++++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45677899999999999999999886
No 340
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=57.31 E-value=18 Score=27.50 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.1
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhc
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (476)
...|-.+--++..+.+.|+|++||++..+|..
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34466677789999999999999999888754
No 341
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=57.11 E-value=15 Score=39.10 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=51.0
Q ss_pred HHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhcc---
Q 011861 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQ--- 134 (476)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--- 134 (476)
+..|+++.|.+.+. ..++...|.++|..+++.+++ +.|.+.|.++=..+
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~-----------------------~~A~~~y~~~~d~~~l~ 714 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNF-----------------------KLAIEAFTNAHDLESLF 714 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHTCHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCH-----------------------HHHHHHHHHccChhhhH
Confidence 44455555555432 335778999999999999999 88888887753322
Q ss_pred -----ccchHHH------------HHHHH-HHHhhhhHHHHHHHHhcccc
Q 011861 135 -----SNSMKSH------------LLKAN-ALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 135 -----p~~~~~~------------~~~~~-~~~~~~~~~~A~~~~~~~l~ 166 (476)
..+.+.+ +..|. ++...|++++|++.|.+.-+
T Consensus 715 ~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 715 LLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 1222211 22233 45567888888887776544
No 342
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=55.29 E-value=16 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.0
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccC
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIK 77 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~ 77 (476)
.+++.+..+|..+|+.++|.+|...+.++..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 678889999999999999999999999998664
No 343
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.00 E-value=12 Score=42.54 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=58.9
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhcc-CCCC----------------------cccccchhHHHHHHHhhhccCCCCCc
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNI-KPGD----------------------PIVLGNRSSAYIRISQFLKHRPPSAS 106 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~-~p~~----------------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 106 (476)
-+-.|..++..|++++|..+|.+|-.- ...+ +.+|...+..+.+.+.+
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~--------- 915 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY--------- 915 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC---------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH---------
Confidence 366899999999999999999988432 1111 12233333444444444
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHhhcccc-ch--H--HHHHHHHHHHhhhhHHHHHHHHhc
Q 011861 107 EYRPLNGLDPTTHAELALKDAEKLLNLQSN-SM--K--SHLLKANALILLERYDMARDAILS 163 (476)
Q Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~--~--~~~~~~~~~~~~~~~~~A~~~~~~ 163 (476)
+.+++.+..|++..+. .. . .|.++=..+..+|+|++|...+..
T Consensus 916 --------------~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 916 --------------IDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp --------------HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred --------------HHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 7778888888876532 22 1 345555667788899988777653
No 344
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.45 E-value=54 Score=33.44 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=66.5
Q ss_pred hhhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHH-------HHHHhhhccCCCCCcccCCCCCCCC
Q 011861 44 YTHVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAY-------IRISQFLKHRPPSASEYRPLNGLDP 116 (476)
Q Consensus 44 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (476)
...+.-++=.|..++-+++|.+|..++..|++..|.+..+...+-.++ +.+|+.
T Consensus 267 ~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~i------------------- 327 (523)
T 4b4t_S 267 SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDI------------------- 327 (523)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCC-------------------
Confidence 344666777899999999999999999999999998765544443332 335554
Q ss_pred cchHHHHHHHHHHHhhcccc---chHHHHHHHHHHH--hhhhHHHHHHHHhcccccCCCCc
Q 011861 117 TTHAELALKDAEKLLNLQSN---SMKSHLLKANALI--LLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 117 ~~~~~~a~~~~~~al~l~p~---~~~~~~~~~~~~~--~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+.. .+=..|. ....|+.++.++. .+..|..+++.+...+..+....
T Consensus 328 ----P~r------~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 328 ----PEL------SFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ 378 (523)
T ss_dssp ----CCH------HHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH
T ss_pred ----CCh------HHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhH
Confidence 211 0101122 1345777777774 57788888888888877765443
No 345
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=50.32 E-value=18 Score=26.64 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=27.4
Q ss_pred CCcccccccccccccCcEEcc----CCCcccHhhHHHhhh
Q 011861 199 RTDDFDCTLCLKLLYEPITTP----CGHSFCRSCLFQSMD 234 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~~----cgh~fC~~Cl~~~~~ 234 (476)
....+.|.+|.+-+.+.-... -+|.||..|-....+
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 345678999999998874333 469999999876654
No 346
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.00 E-value=5.5 Score=30.59 Aligned_cols=11 Identities=45% Similarity=1.020 Sum_probs=10.4
Q ss_pred ccHhhHHHhhh
Q 011861 224 FCRSCLFQSMD 234 (476)
Q Consensus 224 fC~~Cl~~~~~ 234 (476)
||+.||.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 347
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=49.80 E-value=5.6 Score=30.50 Aligned_cols=11 Identities=45% Similarity=1.068 Sum_probs=10.4
Q ss_pred ccHhhHHHhhh
Q 011861 224 FCRSCLFQSMD 234 (476)
Q Consensus 224 fC~~Cl~~~~~ 234 (476)
||+.||..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 348
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=49.77 E-value=31 Score=29.09 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=59.7
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC--cccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--PIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
...+..++..|-+.||.+-|..+.. .+|.. ....+-+|..|++...+. .+-..
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls----------------------~eQKe 63 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLT----------------------EEQRQ 63 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSC----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCC----------------------HHHHH
Confidence 4567789999999999999988753 44443 366777888888877661 22223
Q ss_pred HHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 126 DAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 126 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
.....+.+..+ --+.+=|++.+.|++++|++.....
T Consensus 64 nIln~itlkSd---e~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 64 TVSNNITLKTD---EQYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHTCCTTSC---HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhCCccCC---HHHHHHHHHHcCCchHHHHHHHHhc
Confidence 33333444332 2345568889999999999876543
No 349
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.66 E-value=13 Score=27.37 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
.-+....|+.+...|+|+.|+.+|+-+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 556778899999999999999999998764
No 350
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=9.2 Score=30.69 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=36.9
Q ss_pred ccccccccccccc---CcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~---~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
..|.|..|...+. ......-|..||..|..+.+.....|..|...+.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 4689999999886 3445577889999999887655447999998874
No 351
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.25 E-value=23 Score=36.13 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcc-----ccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 121 ELALKDAEKLLNLQ-----SNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 121 ~~a~~~~~~al~l~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
+.|.....++.-.. +.....+|+.|.++...++|.+|...+..|+...|.+.......
T Consensus 248 ~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 248 DSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp TTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 66666666663211 12255778899999999999999999999999888766543333
No 352
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.63 E-value=28 Score=34.54 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc---cchHH
Q 011861 64 EEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS---NSMKS 140 (476)
Q Consensus 64 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p---~~~~~ 140 (476)
++.+..+.+-......-..++..+|..|.+.|++ ++|++.+.++.+... .-...
T Consensus 114 ~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~-----------------------~~A~~~~~~~~~~~~~~~~kid~ 170 (429)
T 4b4t_R 114 NEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDK-----------------------DNAEKTLGKSLSKAISTGAKIDV 170 (429)
T ss_dssp HHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCC-----------------------TTHHHHHHHHHHHHTCCCSHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHhcCChHHHHHH
Confidence 3334443332223344457889999999999999 999999999887653 34557
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 141 HLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
++....++...++|..+...+.++-.+
T Consensus 171 ~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 171 MLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 778888889999999999999998554
No 353
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=42.50 E-value=83 Score=35.11 Aligned_cols=93 Identities=8% Similarity=-0.110 Sum_probs=71.4
Q ss_pred HHHhhHHHHHhccHHHHHHHHHHHhcc----CCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHH
Q 011861 50 LVQKGNRAFRESNFEEAISNYSRANNI----KPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALK 125 (476)
Q Consensus 50 ~~~~g~~~~~~~~~~~Ai~~y~~al~~----~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (476)
+...-+.+.+.|+.++|...+.+.-+. ..-|...|.-+-..|.+.|++ ++|.+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~-----------------------~eA~~ 186 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF-----------------------KELVY 186 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCH-----------------------HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCH-----------------------HHHHH
Confidence 334445678999999999999876533 233678899999999999999 99999
Q ss_pred HHHHHhhc--cccchHHHHHHHHHHHhhhhH-HHHHHHHhcccc
Q 011861 126 DAEKLLNL--QSNSMKSHLLKANALILLERY-DMARDAILSGLQ 166 (476)
Q Consensus 126 ~~~~al~l--~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~ 166 (476)
.++...+. .| +.-.|.-+-.+++..|+. ++|...|++..+
T Consensus 187 Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 187 VLFMVKDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99987664 46 556677777788888875 678777777654
No 354
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.45 E-value=6 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.572 Sum_probs=18.4
Q ss_pred cCcEEccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 213 YEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 213 ~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
..+.-..||+.|+ ..+.....||.|+..-
T Consensus 66 ~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3444568999882 1233446799998753
No 355
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=48.49 E-value=5.3 Score=42.46 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=47.3
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhh
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 97 (476)
+.+...+|+..|.+|+|+-|....+.++..+|++..+...+|.+|.++|--
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 511 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQ 511 (668)
Confidence 467788999999999999999999999999999999999999999988865
No 356
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.41 E-value=14 Score=29.87 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=37.5
Q ss_pred Cccccccccccccc---CcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLY---EPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~---~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+.|.|..|...+. .+....-|..||..|..+.+.....|..|...+.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 35789999998885 3566678889999999876654347999998774
No 357
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=42.22 E-value=35 Score=25.61 Aligned_cols=35 Identities=6% Similarity=-0.039 Sum_probs=30.4
Q ss_pred CchhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHh
Q 011861 40 PWDRYTHVFDLVQKGNRAFRESNFEEAISNYSRAN 74 (476)
Q Consensus 40 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al 74 (476)
..+....+..+.+.|.-++.+||+..|+.++.-|.
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999987663
No 358
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=41.51 E-value=35 Score=25.69 Aligned_cols=34 Identities=3% Similarity=-0.024 Sum_probs=29.2
Q ss_pred chhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHh
Q 011861 41 WDRYTHVFDLVQKGNRAFRESNFEEAISNYSRAN 74 (476)
Q Consensus 41 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al 74 (476)
.+....+..+.+.|.-++.+||+..|+.+++-|.
T Consensus 33 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 66 (87)
T 2pmr_A 33 EAVVERALNYRDDSVYYLEKGDHITSFGCITYAH 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566788999999999999999999999987663
No 359
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.36 E-value=41 Score=35.24 Aligned_cols=85 Identities=11% Similarity=-0.034 Sum_probs=57.6
Q ss_pred HHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccccc
Q 011861 58 FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQSNS 137 (476)
Q Consensus 58 ~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 137 (476)
+..+...++...+.++.....++ ....-++...++.|++ ..|...+.+.-.-....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~-----------------------~~a~~~~~~l~~~~~~~ 318 (618)
T 1qsa_A 263 MGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDR-----------------------RGLNTWLARLPMEAKEK 318 (618)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCH-----------------------HHHHHHHHHSCTTGGGS
T ss_pred HHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCH-----------------------HHHHHHHHHcccccccc
Confidence 33443456666666655433322 3334444455677888 88877776655544456
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 138 MKSHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
..+.|++|.++..+|+.++|...|.++.+
T Consensus 319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 319 DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 78899999999999999999999998865
No 360
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.03 E-value=9.3 Score=33.29 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=37.4
Q ss_pred CcccccccccccccC---cEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYE---PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~---P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+.|.|..|...+.. +....-|..||..|..+.+.....|..|...+.
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 357899999998874 566677889999998876553336999998874
No 361
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=39.58 E-value=1.3e+02 Score=26.04 Aligned_cols=82 Identities=20% Similarity=0.057 Sum_probs=59.0
Q ss_pred hhHHHHHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhh
Q 011861 53 KGNRAFRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLN 132 (476)
Q Consensus 53 ~g~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 132 (476)
+-...++-.||+.|+-.-+-.+..+ +..-..++.+++-.|.| ..|+-..
T Consensus 8 kI~Ks~kY~dYdt~~fLsa~L~~~~---~eY~lL~~I~LyyngEY-----------------------~R~Lf~L----- 56 (242)
T 3kae_A 8 KICKSIRYRDYETAIFLAACLLPCK---PEYRMLMSIVLYLNGEY-----------------------TRALFHL----- 56 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCH-----------------------HHHHHHH-----
T ss_pred HHHHHhhcccccHHHHHHHHHccCC---hHHHhhhhhhhhhcchH-----------------------hHHHHHH-----
Confidence 3445677789998876654444334 45566677778888898 6665433
Q ss_pred ccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 133 LQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 133 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
.+-+-..+.+..+.||..+++|..|+..++..+
T Consensus 57 ~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 57 HKLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233567889999999999999999999999988
No 362
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=38.35 E-value=32 Score=34.43 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCC------------------------CCCcchH----HHHHHHHHHHhhc
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNG------------------------LDPTTHA----ELALKDAEKLLNL 133 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~----~~a~~~~~~al~l 133 (476)
++++.||.+|+.+-+. || ..+++-+ +..++|++.|+.+
T Consensus 118 EA~flRA~~yf~L~~~--------------fG~py~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~ 183 (461)
T 3kez_A 118 QALAIRGMALFDLTRI--------------FGYPYLKDNGASLGVPIVKELSTIDSKPARNTVAECYTEIISDLKNSTEL 183 (461)
T ss_dssp HHHHHHHHHHHHHHHH--------------HSCCHHHHTTCSBCCCCCCSCCCTTCCCCCCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------hCCccccccCCcCceeEEeccCCcCCCCCCCCHHHHHHHHHHHHHHHHHh
Q ss_pred cccchH--------HHHHHHHHHHhhhhHHHHHHHHhcccc
Q 011861 134 QSNSMK--------SHLLKANALILLERYDMARDAILSGLQ 166 (476)
Q Consensus 134 ~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~l~ 166 (476)
-|.... ++..+|.+|+..|+|++|.+..++++.
T Consensus 184 L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 184 LSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp SCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
No 363
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=38.28 E-value=1.9e+02 Score=24.74 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=20.4
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHH
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRA 73 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~a 73 (476)
-..|...|...+.+|+++-|..+|.++
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 346777788888888888888888775
No 364
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=36.64 E-value=26 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhcccccCCCCchhhHHH
Q 011861 143 LKANALILLERYDMARDAILSGLQVDPFSNPLQASL 178 (476)
Q Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~~~~~~ 178 (476)
.+|..+...|++++|..+|-+|+.+-|.-.++...+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 588999999999999999999999988776654433
No 365
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=36.39 E-value=94 Score=30.99 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCCCC-------cccccchhHHHHHHHhhhccCCCCCc---ccCCC----------CCCCCc-chHHHHH
Q 011861 66 AISNYSRANNIKPGD-------PIVLGNRSSAYIRISQFLKHRPPSAS---EYRPL----------NGLDPT-THAELAL 124 (476)
Q Consensus 66 Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~-~~~~~a~ 124 (476)
+|...+.+|++..+. .++++.||.+|+.+-+.--..-..++ .+=.. ..++.. ...+..+
T Consensus 85 ~I~~aN~~i~~~~~~~~~~~~~gEA~flRA~~yf~L~~~fG~~Y~~~~~~~~VPl~~~~~~~~~~~~~r~t~~evy~~I~ 164 (460)
T 3snx_A 85 TIDNCNTAISIKGDSEELRQAQGQALALRAFCYLHLVQHYQFTYLKDKDAPCVPIYTEPTTSGTKPKGKSTVAQVYQQIF 164 (460)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTCTTSBCCCCCCSCCCTTCCCCCCCBHHHHHHHHH
T ss_pred HHHHHHHHeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCCCCCceEEeccCCccccCCCCCCHHHHHHHHH
Confidence 455555555532222 38889999999998875210000000 11110 111111 2226778
Q ss_pred HHHHHHhhcccc-------------chHHHHHHHHHHHhhhhHHHHHHHHhccccc
Q 011861 125 KDAEKLLNLQSN-------------SMKSHLLKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 125 ~~~~~al~l~p~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
+|++.|+.+-|. ..-++-.+|.+|+.+|+|++|.+..++++..
T Consensus 165 ~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 165 DDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888888875432 2237888999999999999999999998864
No 366
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.61 E-value=89 Score=26.38 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=46.7
Q ss_pred HHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCC--c------ccc-cchhHHHHHHHhhhccCCCCCcccCCCCCCCCc
Q 011861 47 VFDLVQKGNRAFRESNFEEAISNYSRANNIKPGD--P------IVL-GNRSSAYIRISQFLKHRPPSASEYRPLNGLDPT 117 (476)
Q Consensus 47 ~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~--~------~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (476)
....+..|..+|+.|+|=+|=+.+..+....+.. . .+. ...|..+.+.|+.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~-------------------- 91 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDD-------------------- 91 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCH--------------------
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCH--------------------
Confidence 4566888999999999999999999999987655 1 222 2233344556677
Q ss_pred chHHHHHHHHHHHhhc
Q 011861 118 THAELALKDAEKLLNL 133 (476)
Q Consensus 118 ~~~~~a~~~~~~al~l 133 (476)
.-|...+.+|+..
T Consensus 92 ---~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 92 ---DGMRSLFRTSLQY 104 (161)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 7787888777764
No 367
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=34.77 E-value=44 Score=33.56 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCC------------------------CCCcchH----HHHHHHHHHHhhc
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNG------------------------LDPTTHA----ELALKDAEKLLNL 133 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~----~~a~~~~~~al~l 133 (476)
++++.||.+|+.+-+. || ..+++-+ +..+++++.|+.+
T Consensus 124 Ea~flRA~~yf~L~~~--------------fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~ 189 (477)
T 3mcx_A 124 EALVMRGLSLFNLTRL--------------FGMPYTNDKGASLGVPIETSPSDPTHKPSRSTVAQCYEQVVSDMSNALSG 189 (477)
T ss_dssp HHHHHHHHHHHHHHHH--------------HSCCGGGTTTCSBCCCCCCSSCCTTCCCCCCBHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHH--------------hCCCCCccccccCCceeeecccCcccCCCCCCHHHHHHHHHHHHHHHHHh
Q ss_pred cccchH--------HHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 134 QSNSMK--------SHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 134 ~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
-|.... ++..+|.+|+..|+|++|.+..++++
T Consensus 190 L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 229 (477)
T 3mcx_A 190 LRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVI 229 (477)
T ss_dssp SCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
No 368
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=33.06 E-value=41 Score=33.58 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCC------------------------CCCcchH----HHHHHHHHHHhhc
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNG------------------------LDPTTHA----ELALKDAEKLLNL 133 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~----~~a~~~~~~al~l 133 (476)
++++.||.+|+.+-+. || ..+++-+ +..++|++.|+.+
T Consensus 112 Ea~flRA~~yf~L~~~--------------fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~ 177 (454)
T 3myv_A 112 ETMAVIALCQFDLTRC--------------FGYPYTKDKGASLGAPLIDHLVGTYENPPRSTVAQAYDFIIETLEEAVTL 177 (454)
T ss_dssp HHHHHHHHHHHHHHHH--------------HSCCHHHHTTCSEEEECCCSCCCTTCCCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------hCcCccccccCCCceeeEeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q ss_pred cccchH--------HHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 134 QSNSMK--------SHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 134 ~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
-|.... ++..+|.+|+..|+|++|.+..++++
T Consensus 178 L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 178 MSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp CCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHH
No 369
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=32.47 E-value=42 Score=23.18 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=29.5
Q ss_pred CCcccccccccccccCcEEc--cCCCcccHhhHHHhhhc----CCCCccccc
Q 011861 199 RTDDFDCTLCLKLLYEPITT--PCGHSFCRSCLFQSMDR----GNKCPLCRA 244 (476)
Q Consensus 199 ~~~~~~C~iC~~~~~~P~~~--~cgh~fC~~Cl~~~~~~----~~~Cp~cr~ 244 (476)
...+..|.+|... ..+.. .|...|+..|+..-+.. .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445678889863 23332 78889999999865432 235999965
No 370
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.25 E-value=1.2e+02 Score=28.66 Aligned_cols=115 Identities=15% Similarity=-0.001 Sum_probs=58.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHH-hcc-CCCCcccccchhHHHHHHHhhhccCCCCCcc----cCCCCCC-CC----
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRA-NNI-KPGDPIVLGNRSSAYIRISQFLKHRPPSASE----YRPLNGL-DP---- 116 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~a-l~~-~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~---- 116 (476)
+.+...+++|.++++|++|++....+ ..+ .-+....-..+|..++.. |.+.....+.+ .-.++.. ++
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev--~~~~~~~~~~~~~~rl~~l~~~~p~~~~~ 111 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEV--YDLAEVKVDDISVARLVRLIAELDPSEPN 111 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCSHHHHHHHHHHHTTCCTTCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHH--HHHcCCCCCHHHHHHHHHHHHHCCCCCch
Confidence 45566778888999999999985544 332 223332222332222211 11111111110 0000000 11
Q ss_pred -cchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 117 -TTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 117 -~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
...+.+|++-..+.=+..-.++..|..+|..|...|++.+|..+|..+
T Consensus 112 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 112 LKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 112233333222221112247789999999999999999999999854
No 371
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.88 E-value=55 Score=24.21 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+.+.|+....+|++.|..- .---.+.-|.+|++.|..+++..|+...
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g--------~y~eAl~lY~~aie~l~~~lk~e~d~~~ 53 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEG--------KVEDAITYYKKAIEVLSQIIVLYPESVA 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3488888889998886321 1112234456677777777766665554
No 372
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=31.48 E-value=70 Score=23.68 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCch
Q 011861 119 HAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSNP 173 (476)
Q Consensus 119 ~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~~ 173 (476)
+.+.|+....+|++.|..- .---.+.-|.+|++.|..+++..|+...
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g--------~y~eAl~lY~~aie~l~~alk~e~d~~~ 61 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEG--------NAEEAITNYKKAIEVLAQLVSLYRDGST 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHSTTSST
T ss_pred HHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3488888888888876321 1112233456666666666666665443
No 373
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=31.34 E-value=30 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.412 Sum_probs=35.9
Q ss_pred CcccccccccccccC-cEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYE-PITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~-P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+.|.|..|...+.. +....-|..||..|..+. .+..|..|+..+.
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 357899999988875 455677889999998654 3467999998874
No 374
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.35 E-value=63 Score=25.68 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhc
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN 75 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~ 75 (476)
...++++.+..+|-..=..|+-++|+.+|.++|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3445667777777666666777777777766654
No 375
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.11 E-value=99 Score=25.69 Aligned_cols=63 Identities=10% Similarity=-0.103 Sum_probs=47.1
Q ss_pred HHHHhhHHH-HHhccHHHHHHHHHHHhccCCCCcccccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHH
Q 011861 49 DLVQKGNRA-FRESNFEEAISNYSRANNIKPGDPIVLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDA 127 (476)
Q Consensus 49 ~~~~~g~~~-~~~~~~~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (476)
+++..|-.+ -.+|+-++--+.+...+...+-++.++..+|.||-++|+. .+|.+..
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~-----------------------r~a~eLl 148 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE-----------------------RDATTLL 148 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcch-----------------------hhHHHHH
Confidence 455555544 4567777777778877777777899999999999999999 8888887
Q ss_pred HHHhhcc
Q 011861 128 EKLLNLQ 134 (476)
Q Consensus 128 ~~al~l~ 134 (476)
.+|.+..
T Consensus 149 ~~AC~kG 155 (172)
T 1wy6_A 149 IEACKKG 155 (172)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7777643
No 376
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=29.15 E-value=77 Score=23.95 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhcccccCCCCc
Q 011861 116 PTTHAELALKDAEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGLQVDPFSN 172 (476)
Q Consensus 116 ~~~~~~~a~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~l~p~~~ 172 (476)
+..+.+.|+..+.+|++.|..- .---.+.-|..|++.|..+++..|+..
T Consensus 8 ~~~~l~~Ai~lv~~Ave~D~~g--------~y~eAl~~Y~~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 8 QDSDSTAAVAVLKRAVELDAES--------RYQQALVCYQEGIDMLLQVLKGTKESS 56 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred chHHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4455689999999998886321 111223445677777777776665544
No 377
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.86 E-value=64 Score=28.30 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=32.3
Q ss_pred hhHHHHHHhhHHHHHhccHHHHHHHHHHHhccCCCCc
Q 011861 45 THVFDLVQKGNRAFRESNFEEAISNYSRANNIKPGDP 81 (476)
Q Consensus 45 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~p~~~ 81 (476)
..+.-.+=.|..++.+++|.+|-.++.+|++..|.+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4456667789999999999999999999999999765
No 378
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.25 E-value=66 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=24.0
Q ss_pred CCCcccccccccccccCcEEc---cCCCcccHhhHHHh
Q 011861 198 ERTDDFDCTLCLKLLYEPITT---PCGHSFCRSCLFQS 232 (476)
Q Consensus 198 ~~~~~~~C~iC~~~~~~P~~~---~cgh~fC~~Cl~~~ 232 (476)
....+..|.+|...- .-..+ -|+-.|+..||.+.
T Consensus 11 ~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 345677899998432 22233 58899999999874
No 379
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.25 E-value=1e+02 Score=30.99 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHhhhccCCCCCcccCCCCC--------------------------CCCcchH----HHHHHHHHHHh
Q 011861 82 IVLGNRSSAYIRISQFLKHRPPSASEYRPLNG--------------------------LDPTTHA----ELALKDAEKLL 131 (476)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~----~~a~~~~~~al 131 (476)
++++.||.+|+.+-+. || ..+++-+ +..+++++.|+
T Consensus 120 EA~flRA~~Yf~L~~~--------------fG~~y~~~~~~~~VPl~~~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~ 185 (495)
T 3lew_A 120 QALALRGFLYLHLASC--------------YSFAIDKDPDAVCAPIYTQSTDETIAAEGKPASSVSEVYAQSINDLEEAL 185 (495)
T ss_dssp HHHHHHHHHHHHHHHH--------------SSSCTTTCTTSEEECCCCSCC-CHHHHSCCCCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------hCcccccccCCCCceEEecCCCccccccCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred hccccc-----------hHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 132 NLQSNS-----------MKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 132 ~l~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
.+-|.. .-++..+|.+|+..|+|++|....++++
T Consensus 186 ~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi 230 (495)
T 3lew_A 186 ELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLL 230 (495)
T ss_dssp HHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
No 380
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.10 E-value=70 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.516 Sum_probs=20.1
Q ss_pred cccccccccccccCc-EEccCCCcccHhhHHHhhh
Q 011861 201 DDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMD 234 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P-~~~~cgh~fC~~Cl~~~~~ 234 (476)
..|.|..|...+... ....-|..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 356677776666432 3345566677777665554
No 381
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.85 E-value=54 Score=27.66 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=34.7
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+.|.|..|...+......--|..||..|..+.+ +..|..|...+.
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 4578999999888654334668889999987654 457999988763
No 382
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.97 E-value=3.3e+02 Score=25.83 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHhc
Q 011861 136 NSMKSHLLKANALILLERYDMARDAILS 163 (476)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (476)
.++..|..+|..|...++|.+|..+|..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~il 161 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVL 161 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 4678899999999999999999999863
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.81 E-value=1.5e+02 Score=32.76 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=33.5
Q ss_pred HHHHhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccc
Q 011861 127 AEKLLNLQSNSMKSHLLKANALILLERYDMARDAILSGL 165 (476)
Q Consensus 127 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 165 (476)
....+...|.++-.-|-+|.+|...|++++|...|+++-
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345566778888888999999999999999999999875
No 384
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.53 E-value=76 Score=28.13 Aligned_cols=30 Identities=23% Similarity=0.508 Sum_probs=20.9
Q ss_pred ccccccccccccCc---E-EccCCCcccHhhHHH
Q 011861 202 DFDCTLCLKLLYEP---I-TTPCGHSFCRSCLFQ 231 (476)
Q Consensus 202 ~~~C~iC~~~~~~P---~-~~~cgh~fC~~Cl~~ 231 (476)
...|..|...|.-- . -..||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899998776522 1 147999999988643
No 385
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=24.49 E-value=65 Score=22.25 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=24.6
Q ss_pred ccccccccccCcEE---ccCCCcccHhhHHHhhhcCCCCccc
Q 011861 204 DCTLCLKLLYEPIT---TPCGHSFCRSCLFQSMDRGNKCPLC 242 (476)
Q Consensus 204 ~C~iC~~~~~~P~~---~~cgh~fC~~Cl~~~~~~~~~Cp~c 242 (476)
.|-.|...+.+... ..|++.||..|=.=.-..-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 37777777655443 3789999999943211233458877
No 386
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.42 E-value=44 Score=28.61 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=31.3
Q ss_pred CcccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
...|.|..|...+.......-|..||..|..+.+ +..|..|+..+.
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~ 130 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 130 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCC
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccC
Confidence 3567888888777544333457778988876543 357888988763
No 387
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.20 E-value=31 Score=32.64 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=33.8
Q ss_pred CcccccccccccccCcEEc----cCC--CcccHhhHHHhhhcCCCCcccccc
Q 011861 200 TDDFDCTLCLKLLYEPITT----PCG--HSFCRSCLFQSMDRGNKCPLCRAV 245 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P~~~----~cg--h~fC~~Cl~~~~~~~~~Cp~cr~~ 245 (476)
+..-.|++|.....--+.. .-| +-+|..|-..|--....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6678999999765444433 244 467999988888777889999763
No 388
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.63 E-value=7.4 Score=29.84 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=28.0
Q ss_pred cccccccccccccCcEEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 201 DDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
.+..||.|...+.- .=++.+|..|-. .+.....||.|.+++.
T Consensus 31 M~~~CP~Cq~eL~~----~g~~~hC~~C~~-~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQ----DNGHARCRSCGE-FIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEE----ETTEEEETTTCC-EEEEEEECTTTCSBCE
T ss_pred ccccCccCCCccee----cCCEEECccccc-hhhccccCcchhhHHH
Confidence 34789999976652 234555888854 2344456999998873
No 389
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.59 E-value=51 Score=25.06 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhcc
Q 011861 140 SHLLKANALILLERYDMARDAILSG 164 (476)
Q Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (476)
.+-+++..+...|+|++|+....++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4558999999999999997654443
No 390
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=23.24 E-value=22 Score=30.81 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=28.5
Q ss_pred ccccccccccccCcEEccCCCcccHhhHHHhhhc----CCCCcccccc
Q 011861 202 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDR----GNKCPLCRAV 245 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~~~~cgh~fC~~Cl~~~~~~----~~~Cp~cr~~ 245 (476)
+..|.+|...-.--.--.|...|+..|+...+.. .-.||.|+..
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4568888855331111278889999998665543 2359999864
No 391
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=23.12 E-value=18 Score=21.61 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=12.6
Q ss_pred ccCCCcccHhhHHHhh
Q 011861 218 TPCGHSFCRSCLFQSM 233 (476)
Q Consensus 218 ~~cgh~fC~~Cl~~~~ 233 (476)
.+|.|+.|..|--..+
T Consensus 10 ascehtmcgycqgply 25 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLY 25 (40)
T ss_dssp HHTCGGGGGGSCHHHH
T ss_pred HhccccccccccCCee
Confidence 4799999999975544
No 392
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.95 E-value=7.5 Score=31.38 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=27.8
Q ss_pred ccccccccccccCc---E-EccCCCcccHhhHHHhhhcCCCCccccccc
Q 011861 202 DFDCTLCLKLLYEP---I-TTPCGHSFCRSCLFQSMDRGNKCPLCRAVL 246 (476)
Q Consensus 202 ~~~C~iC~~~~~~P---~-~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~ 246 (476)
...|..|...|.-. - -..||..||..|..........|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34688888766532 1 258999999999765444455688885543
No 393
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=22.91 E-value=56 Score=24.64 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=18.1
Q ss_pred hhhhHHHHHHhhHHHHHh---ccHHHHHHHHHHHhc
Q 011861 43 RYTHVFDLVQKGNRAFRE---SNFEEAISNYSRANN 75 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~---~~~~~Ai~~y~~al~ 75 (476)
..+++..+..+|-..=.. |+-++|+.+|.+++.
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 344556666665555555 555555555555543
No 394
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.86 E-value=1.9e+02 Score=28.26 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=65.5
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhccC----------------------CCCc------------------c-----
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANNIK----------------------PGDP------------------I----- 82 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~~~----------------------p~~~------------------~----- 82 (476)
.+..+.|..|...|++++-..........- |+.. -
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888777765543321 2211 1
Q ss_pred -cccchhHHHHHHHhhhccCCCCCcccCCCCCCCCcchHHHHHHHHHHHhhccc------cchHHHHHHHHHHHhhhhHH
Q 011861 83 -VLGNRSSAYIRISQFLKHRPPSASEYRPLNGLDPTTHAELALKDAEKLLNLQS------NSMKSHLLKANALILLERYD 155 (476)
Q Consensus 83 -~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~ 155 (476)
+-..+|..|+..|+| .+|++.+.+..+-.. .-...|..-...|..+|++.
T Consensus 100 ~l~~kL~~l~~~~~~y-----------------------~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 100 SLEARLIALYFDTALY-----------------------TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHTTCH-----------------------HHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhH-----------------------HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 122577888888888 888777777666321 12446777778888889999
Q ss_pred HHHHHHhccccc
Q 011861 156 MARDAILSGLQV 167 (476)
Q Consensus 156 ~A~~~~~~~l~l 167 (476)
.+...+.++...
T Consensus 157 k~k~~l~~a~~~ 168 (394)
T 3txn_A 157 KARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 988888887654
No 395
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=22.63 E-value=37 Score=25.72 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=34.1
Q ss_pred CcccccccccccccCc-EEccCCCcccHhhHHHhhhcCCCCcccccccc
Q 011861 200 TDDFDCTLCLKLLYEP-ITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF 247 (476)
Q Consensus 200 ~~~~~C~iC~~~~~~P-~~~~cgh~fC~~Cl~~~~~~~~~Cp~cr~~~~ 247 (476)
...|.|..|...+... ....-|..||..|..+. .+..|..|...+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 3578899999888654 44567888999997543 3567999988774
No 396
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.59 E-value=34 Score=22.50 Aligned_cols=41 Identities=24% Similarity=0.611 Sum_probs=25.2
Q ss_pred cccccccccc-CcEEc--cCCCcccHhhHHHhhhc----CCCCccccc
Q 011861 204 DCTLCLKLLY-EPITT--PCGHSFCRSCLFQSMDR----GNKCPLCRA 244 (476)
Q Consensus 204 ~C~iC~~~~~-~P~~~--~cgh~fC~~Cl~~~~~~----~~~Cp~cr~ 244 (476)
.|.+|...-. +.+.. .|...|+..|+..-+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 3667765432 22222 78889999999654442 234998864
No 397
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.52 E-value=21 Score=21.79 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=7.3
Q ss_pred cccccccccccCc
Q 011861 203 FDCTLCLKLLYEP 215 (476)
Q Consensus 203 ~~C~iC~~~~~~P 215 (476)
|.||+|+..+.++
T Consensus 6 FiCP~C~~~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMKSLGSA 18 (34)
T ss_dssp EECTTTCCEESSH
T ss_pred cCCcHHHHHcCCH
Confidence 5566666555544
No 398
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=22.41 E-value=39 Score=34.40 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=57.0
Q ss_pred cccccchhHHHHHHHhhh------ccCCCCCcccCCCCCCCCc-chHHHHHHHHHHHhhccccc-----------hHHHH
Q 011861 81 PIVLGNRSSAYIRISQFL------KHRPPSASEYRPLNGLDPT-THAELALKDAEKLLNLQSNS-----------MKSHL 142 (476)
Q Consensus 81 ~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~al~l~p~~-----------~~~~~ 142 (476)
.++++.||.+|+.+-+.- +.....+ + .....++.. ...+..+++++.|+..-|.. .-|+.
T Consensus 109 aea~flRA~~yf~L~~~~G~VP~~~~~~~~~-~-~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~a 186 (517)
T 3qnk_A 109 GEVHFLRAMFYFEMVKRYGGVILLDKVLTME-D-NWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYA 186 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCSSCCCTT-S-CCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeCCcCCcc-c-cccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcccCcccHHHHHH
Confidence 588899999999887641 1111111 1 011222222 33377788999998876641 23788
Q ss_pred HHHHHHHhhhhHHHHHHHHhccccc
Q 011861 143 LKANALILLERYDMARDAILSGLQV 167 (476)
Q Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~l~l 167 (476)
.+|.+|+..++|++|.+..++++..
T Consensus 187 llarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 187 LKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988753
No 399
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=22.20 E-value=46 Score=23.03 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=22.5
Q ss_pred hhhhHHHHHhcCCCChHHhHhhcccC
Q 011861 446 PERFSFWLATLSDRRPSERLELLRIR 471 (476)
Q Consensus 446 p~~l~~~va~~l~l~~~~kq~LLe~~ 471 (476)
-..++..|++.|.+++++.|.+|+..
T Consensus 23 ~~~m~kaI~avL~Fs~~e~q~il~~e 48 (60)
T 1upt_B 23 TKTMAKVITTVLKFPDDQTQKILERE 48 (60)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34688899999999999999998754
No 400
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.15 E-value=1e+02 Score=27.47 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=21.3
Q ss_pred ccccccccccccCcE----EccCCCcccHhhHHH
Q 011861 202 DFDCTLCLKLLYEPI----TTPCGHSFCRSCLFQ 231 (476)
Q Consensus 202 ~~~C~iC~~~~~~P~----~~~cgh~fC~~Cl~~ 231 (476)
...|..|...|.--. -..||..||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 458999987665221 248999999999653
No 401
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=21.84 E-value=19 Score=33.06 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhcc
Q 011861 43 RYTHVFDLVQKGNRAFRESNFEEAISNYSRANNI 76 (476)
Q Consensus 43 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~~ 76 (476)
....|..+..+|-.+=+.|+|++|+.+|.+|+++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778888999999999999999999999876
No 402
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.04 E-value=14 Score=27.36 Aligned_cols=16 Identities=38% Similarity=0.951 Sum_probs=12.8
Q ss_pred cCCCcccHhhHHHhhh
Q 011861 219 PCGHSFCRSCLFQSMD 234 (476)
Q Consensus 219 ~cgh~fC~~Cl~~~~~ 234 (476)
.||+.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999876543
No 403
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.94 E-value=80 Score=27.44 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=37.6
Q ss_pred HHHHHhhHHHHHhccHHHHHHHHHHHhc-------cCC-CCcccccchhHHHHHHHhh
Q 011861 48 FDLVQKGNRAFRESNFEEAISNYSRANN-------IKP-GDPIVLGNRSSAYIRISQF 97 (476)
Q Consensus 48 ~~~~~~g~~~~~~~~~~~Ai~~y~~al~-------~~p-~~~~~~~~~a~~~~~~~~~ 97 (476)
.+....+|..+++||-..|+..+..|=. +-| ....-..++|..++..|+|
T Consensus 109 ~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~ 166 (191)
T 3dza_A 109 ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKY 166 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCH
Confidence 6688899999999999999988877611 112 1124556788999999998
No 404
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.89 E-value=30 Score=27.98 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=21.0
Q ss_pred ccccccccccccCc---E-EccCCCcccHhhHHH
Q 011861 202 DFDCTLCLKLLYEP---I-TTPCGHSFCRSCLFQ 231 (476)
Q Consensus 202 ~~~C~iC~~~~~~P---~-~~~cgh~fC~~Cl~~ 231 (476)
...|..|...|.-- . -..||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34688888776532 1 248999999999643
No 405
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.85 E-value=24 Score=31.25 Aligned_cols=43 Identities=19% Similarity=0.467 Sum_probs=28.9
Q ss_pred cccccccccccccCcEE--ccCCCcccHhhHHHhhhc----CCCCcccccc
Q 011861 201 DDFDCTLCLKLLYEPIT--TPCGHSFCRSCLFQSMDR----GNKCPLCRAV 245 (476)
Q Consensus 201 ~~~~C~iC~~~~~~P~~--~~cgh~fC~~Cl~~~~~~----~~~Cp~cr~~ 245 (476)
.+..|.+|...-. +. -.|...|+..|+...+.. .-.||.|+..
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3456899985432 22 278889999998665442 2359999864
No 406
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.58 E-value=1.5e+02 Score=29.40 Aligned_cols=69 Identities=3% Similarity=-0.006 Sum_probs=49.4
Q ss_pred hhhhhHHHHHHhhHHHHHhccHHHHHHHHHHHhc---cCCCCc----ccccchhHHHHHHHhhhccCCCCCcccCCCCCC
Q 011861 42 DRYTHVFDLVQKGNRAFRESNFEEAISNYSRANN---IKPGDP----IVLGNRSSAYIRISQFLKHRPPSASEYRPLNGL 114 (476)
Q Consensus 42 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~al~---~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (476)
+...+++-+....+.++..+||.+|...++++.. -.+..+ .++...|..+..-++|
T Consensus 172 ~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y----------------- 234 (445)
T 4b4t_P 172 EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREY----------------- 234 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCH-----------------
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhH-----------------
Confidence 3445577788889999999999999999999743 122222 4556667777777777
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 011861 115 DPTTHAELALKDAEKLLNL 133 (476)
Q Consensus 115 ~~~~~~~~a~~~~~~al~l 133 (476)
.+|-..|..+.+.
T Consensus 235 ------~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 235 ------LEVAQYLQEIYQT 247 (445)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhc
Confidence 7777777777653
No 407
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.53 E-value=50 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=19.0
Q ss_pred Cccccccccccccc--CcEEccCCCcccHhhHHHh
Q 011861 200 TDDFDCTLCLKLLY--EPITTPCGHSFCRSCLFQS 232 (476)
Q Consensus 200 ~~~~~C~iC~~~~~--~P~~~~cgh~fC~~Cl~~~ 232 (476)
.+.|.|..|...+. ......-|..||..|....
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 34567777776665 2333445566777776543
No 408
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=20.14 E-value=3.2e+02 Score=22.30 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=36.3
Q ss_pred CcccceeEEEEEEeeecCCceEEEEEEecceeEEeeeecCCCeeEEEEEEe
Q 011861 337 SVADFACEVEITECEPLPDGRFVLEIESRRRFRILRSWDQDGYRVAEIEWV 387 (476)
Q Consensus 337 ~l~~iGt~~~I~~~~~~~dG~~~V~v~G~~R~~I~~~~~~~~~~~a~v~~l 387 (476)
|+-++||-++-+...+..++ .+++++-...+.-....+.+..++.+|.+.
T Consensus 87 DV~DFaTPV~~I~~~~~g~~-trl~I~~~G~~ey~~~yQ~d~~~~veV~P~ 136 (138)
T 4aqz_A 87 DVADFKTPVQKVTLKRLNND-TQLIITTAGNWELVNKSAAPGYFTFQVLPK 136 (138)
T ss_dssp CCTTSSSSEEEEEEEECSSS-EEEEEEECSSEEEEEEEEETTEEEEEEEEC
T ss_pred eccccCCCceEEEEEEcCCC-EEEEEEeCCceeEEeeEeeCCEEEEEEEeC
Confidence 56789999888877775544 566666666677666667788888888765
Done!