Query 011863
Match_columns 476
No_of_seqs 225 out of 2078
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.3E-53 2.8E-58 422.2 51.6 421 47-470 12-454 (455)
2 PRK10189 MATE family multidrug 100.0 7.9E-50 1.7E-54 398.9 51.0 421 43-465 18-468 (478)
3 PRK00187 multidrug efflux prot 100.0 2.6E-48 5.6E-53 388.0 53.4 410 48-459 6-444 (464)
4 PRK01766 multidrug efflux prot 100.0 1.2E-46 2.5E-51 377.3 53.3 417 45-463 5-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.3E-46 2.8E-51 375.2 49.7 409 49-464 9-440 (453)
6 PRK10367 DNA-damage-inducible 100.0 6.5E-46 1.4E-50 367.4 51.1 403 49-463 6-434 (441)
7 KOG1347 Uncharacterized membra 100.0 3.5E-37 7.6E-42 302.2 33.1 425 47-473 23-466 (473)
8 TIGR01695 mviN integral membra 100.0 1.2E-33 2.6E-38 287.5 48.9 396 54-459 2-428 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 2.5E-33 5.5E-38 284.1 46.9 395 55-459 2-434 (488)
10 TIGR00797 matE putative efflux 100.0 2.5E-32 5.3E-37 264.0 41.0 320 60-380 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 4.5E-30 9.7E-35 254.4 43.8 384 54-457 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.2E-26 2.5E-31 230.3 47.3 369 82-459 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.6E-24 3.4E-29 211.3 48.5 402 52-459 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 1.3E-23 2.9E-28 213.0 46.0 380 51-458 4-404 (492)
15 COG2244 RfbX Membrane protein 99.9 3.5E-21 7.6E-26 194.8 38.4 373 50-443 4-396 (480)
16 PRK00187 multidrug efflux prot 99.9 4E-21 8.7E-26 192.3 25.8 206 47-253 231-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 6E-20 1.3E-24 182.3 26.0 209 45-255 234-444 (455)
18 PRK10189 MATE family multidrug 99.9 1.5E-19 3.3E-24 181.1 28.6 211 47-258 254-466 (478)
19 PRK01766 multidrug efflux prot 99.9 7.6E-20 1.6E-24 183.6 25.5 207 47-254 234-442 (456)
20 PRK09575 vmrA multidrug efflux 99.8 3.6E-19 7.7E-24 178.0 26.4 205 47-254 229-436 (453)
21 TIGR01695 mviN integral membra 99.8 2.6E-17 5.6E-22 167.7 31.7 229 49-286 220-453 (502)
22 PRK10367 DNA-damage-inducible 99.8 2.2E-17 4.8E-22 163.9 24.5 186 269-458 6-211 (441)
23 PF03023 MVIN: MviN-like prote 99.7 6.5E-15 1.4E-19 146.5 30.5 204 49-254 195-403 (451)
24 TIGR02900 spore_V_B stage V sp 99.7 1.5E-15 3.3E-20 154.2 26.2 203 47-254 220-434 (488)
25 PF01554 MatE: MatE; InterPro 99.7 4E-18 8.6E-23 146.0 5.6 160 60-220 1-162 (162)
26 PRK10459 colanic acid exporter 99.7 1.2E-13 2.7E-18 140.1 32.7 201 48-254 203-405 (492)
27 COG0728 MviN Uncharacterized m 99.7 2.7E-13 5.9E-18 133.0 33.4 204 49-254 229-437 (518)
28 PRK15099 O-antigen translocase 99.6 9.1E-14 2E-18 137.9 26.5 200 47-253 210-411 (416)
29 TIGR00797 matE putative efflux 99.6 8.3E-14 1.8E-18 134.6 21.4 175 280-458 1-196 (342)
30 PF01943 Polysacc_synt: Polysa 99.6 4.9E-12 1.1E-16 117.9 31.2 245 55-315 2-247 (273)
31 COG2244 RfbX Membrane protein 99.6 1.2E-12 2.5E-17 132.7 26.5 185 47-236 208-394 (480)
32 PF01554 MatE: MatE; InterPro 99.5 7.4E-15 1.6E-19 125.6 6.3 145 280-424 1-162 (162)
33 PF13440 Polysacc_synt_3: Poly 99.3 9.2E-09 2E-13 94.6 29.1 216 71-308 3-220 (251)
34 KOG1347 Uncharacterized membra 99.1 2.5E-08 5.3E-13 99.0 20.8 189 268-459 24-230 (473)
35 PF07260 ANKH: Progressive ank 99.0 4.6E-06 1E-10 75.5 30.8 248 50-305 9-269 (345)
36 PF04506 Rft-1: Rft protein; 99.0 2.9E-06 6.4E-11 85.5 31.7 399 56-458 5-469 (549)
37 KOG2864 Nuclear division RFT1 98.8 0.00019 4.2E-09 68.2 34.0 396 50-457 6-447 (530)
38 PF04506 Rft-1: Rft protein; 98.5 3.9E-05 8.5E-10 77.6 22.1 203 51-254 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 2.2E-05 4.7E-10 65.5 16.3 79 174-254 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 1.1E-05 2.3E-10 67.4 9.3 79 377-459 2-80 (146)
41 KOG2864 Nuclear division RFT1 97.8 0.0025 5.5E-08 60.8 17.5 201 52-254 239-449 (530)
42 COG4267 Predicted membrane pro 97.7 0.054 1.2E-06 50.7 33.0 299 100-426 72-413 (467)
43 PF13440 Polysacc_synt_3: Poly 97.2 0.06 1.3E-06 49.0 19.2 122 324-457 50-171 (251)
44 PF01943 Polysacc_synt: Polysa 97.1 0.056 1.2E-06 49.8 18.6 71 385-458 120-190 (273)
45 PF07260 ANKH: Progressive ank 97.0 0.29 6.2E-06 45.2 20.2 143 269-413 8-168 (345)
46 PF05975 EcsB: Bacterial ABC t 89.8 21 0.00046 35.0 16.5 38 325-362 88-125 (386)
47 COG4267 Predicted membrane pro 78.7 65 0.0014 31.0 13.4 95 125-223 319-414 (467)
48 COG5393 Predicted membrane pro 72.6 17 0.00037 28.1 6.1 55 419-474 68-122 (131)
49 PF11457 DUF3021: Protein of u 54.5 1.1E+02 0.0024 24.6 15.9 21 452-472 116-136 (136)
50 PTZ00370 STEVOR; Provisional 47.7 28 0.00061 31.8 4.1 35 432-467 255-292 (296)
51 PF11947 DUF3464: Protein of u 41.3 2.1E+02 0.0045 23.8 8.6 27 48-74 59-86 (153)
52 PF04995 CcmD: Heme exporter p 38.8 86 0.0019 19.9 4.3 32 436-468 7-39 (46)
53 PF04505 Dispanin: Interferon- 37.8 85 0.0018 22.9 4.7 35 316-350 42-76 (82)
54 PF06781 UPF0233: Uncharacteri 37.6 1.7E+02 0.0037 21.7 7.5 39 60-98 35-75 (87)
55 KOG2532 Permease of the major 36.1 3.9E+02 0.0085 27.0 10.7 114 338-457 102-217 (466)
56 PRK09546 zntB zinc transporter 35.0 1.2E+02 0.0027 28.8 6.7 43 417-461 273-323 (324)
57 PF14184 YrvL: Regulatory prot 33.8 2.6E+02 0.0055 22.6 14.0 99 134-234 6-105 (132)
58 TIGR00383 corA magnesium Mg(2+ 31.8 1.6E+02 0.0034 27.9 6.9 17 445-461 301-317 (318)
59 PRK02251 putative septation in 30.7 2.2E+02 0.0049 21.0 7.7 38 60-97 36-74 (87)
60 TIGR01478 STEVOR variant surfa 30.2 51 0.0011 30.2 2.9 32 432-464 259-293 (295)
61 PF03904 DUF334: Domain of unk 27.5 2.8E+02 0.0061 24.6 6.8 38 124-161 142-179 (230)
62 COG0598 CorA Mg2+ and Co2+ tra 26.3 1.7E+02 0.0037 27.8 6.1 43 417-461 271-321 (322)
63 TIGR03141 cytochro_ccmD heme e 26.2 1.8E+02 0.0038 18.4 5.3 16 436-452 8-23 (45)
64 PF02487 CLN3: CLN3 protein; 25.9 2.4E+02 0.0052 27.8 7.0 28 46-73 237-264 (402)
65 PRK13852 type IV secretion sys 25.3 3.5E+02 0.0075 25.4 7.5 36 316-352 48-83 (295)
66 PRK11085 magnesium/nickel/coba 23.4 2.9E+02 0.0062 26.2 6.8 57 402-461 251-315 (316)
67 KOG2234 Predicted UDP-galactos 22.7 6.9E+02 0.015 24.0 19.0 40 260-303 78-117 (345)
68 PRK00159 putative septation in 22.0 3.4E+02 0.0073 20.1 7.6 39 60-98 35-75 (87)
69 PRK01637 hypothetical protein; 22.0 6.4E+02 0.014 23.4 14.8 8 318-325 116-123 (286)
70 PF06570 DUF1129: Protein of u 21.9 5.4E+02 0.012 22.5 9.3 7 359-365 99-105 (206)
71 COG0598 CorA Mg2+ and Co2+ tra 20.3 7E+02 0.015 23.6 8.9 23 231-254 297-319 (322)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.3e-53 Score=422.19 Aligned_cols=421 Identities=24% Similarity=0.372 Sum_probs=391.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
.++..|+++++++|+++++++..+++++|+.++||+|++++++.+++.++..+ ...+..|++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 55688999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHH
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (476)
++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..++....+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777655 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CCcchHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCCCChhhHHhHHHHHHHHHHH
Q 011863 206 VSLASLLVHLLVTWLFVYK-MQ-LGLIGTAITLSFSWWVLIFGMFGYVACGGC--PRTWTGFSMEAFSDLWEFVKLSVAS 281 (476)
Q Consensus 206 ~~i~~~~~~i~l~~~li~~-~~-~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 281 (476)
.++++.++|+++|++++++ ++ +|+.|+++||++++++.+++..+++.+++. .....+..+.+++.+|+++++|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999998753 3332334455668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 011863 282 GVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVVTSIAI 344 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 344 (476)
++++..+...+...+.+.+++|++.+|....+.. |++++++|+||++++++..+.+.++++.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~ 330 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLI 330 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876654332221 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 011863 345 GVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGIL 424 (476)
Q Consensus 345 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~ 424 (476)
++..+++++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+++||.||++.++..++++.|.+.+|+.++
T Consensus 331 ~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~ 410 (455)
T COG0534 331 ALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYL 410 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011863 425 LGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAAT 470 (476)
Q Consensus 425 l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (476)
+.... +|..|+|++.. .++.++.++..++++|.+|++...+.++
T Consensus 411 l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (455)
T COG0534 411 LGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAAAS 454 (455)
T ss_pred Hhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 99544 99999999999 9999999999999999999887765543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=7.9e-50 Score=398.92 Aligned_cols=421 Identities=15% Similarity=0.202 Sum_probs=379.0
Q ss_pred ccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 011863 43 LTRRFWIE--SKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120 (476)
Q Consensus 43 ~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~ 120 (476)
.+++.++. .|++++++.|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++.+++++|++
T Consensus 18 ~~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~ 96 (478)
T PRK10189 18 AKRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSL 96 (478)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 34445544 8999999999999999999999999999999999999999999999988 88899999999999999999
Q ss_pred cCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 011863 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLG--QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ 197 (476)
Q Consensus 121 g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~--~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~ 197 (476)
|++|++++++..++++.+++.++++.+++ +.+.++++.++. .|+++.+.+.+|+++..++.|+..+.....+++||.
T Consensus 97 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~ 176 (478)
T PRK10189 97 GKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGA 176 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887765 788899999884 689999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHHHHHHHHHHHhc-C--CCCccCC-CChhhHH
Q 011863 198 LKTMVIAWVSLASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACG-G--CPRTWTG-FSMEAFS 269 (476)
Q Consensus 198 g~~~~~~~~~i~~~~~~i~l~~~li~~~----~~gi~g~a~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~ 269 (476)
||++.+++.+++..++|+++++++++.. ++|+.|+++|+.+++++..++..+++.++ + .+.++++ +.+.+++
T Consensus 177 G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (478)
T PRK10189 177 GNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFA 256 (478)
T ss_pred CchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHH
Confidence 9999999999999999999999999853 68999999999999999888777666543 2 1111111 1223567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHH
Q 011863 270 DLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARF 332 (476)
Q Consensus 270 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~ 332 (476)
.+|+++++|+|.++..........+.+.+++++|+..+|....+.. |++|+++|++|.+++++
T Consensus 257 ~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~ 336 (478)
T PRK10189 257 IIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAER 336 (478)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999999999999998888888899999875543222111 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHH
Q 011863 333 ATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLG 412 (476)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~ 412 (476)
..+.+.+++++++..++++++++++++.++|++|+|+.+.+..++++.++..++++.+.+..+.++|.||++.++.+++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~ 416 (478)
T PRK10189 337 QLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSML 416 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 011863 413 CYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREA 465 (476)
Q Consensus 413 ~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~ 465 (476)
+.|++.+|+.+++....++|+.|+|++.. +++.+..++..+++++.+|++..
T Consensus 417 ~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~-~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 417 GMWGCRVVAGYILGIMLGFGVVGVWMGMF-LDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHcCccccCC
Confidence 99999999999998878899999999999 99999999999999999999943
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.6e-48 Score=388.01 Aligned_cols=410 Identities=21% Similarity=0.275 Sum_probs=368.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcccc
Q 011863 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (476)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (476)
++..|++++++.|.+++++...+.+.+|+.+++|+|++++++++++.++.++ ...+..|++++..+.++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 4578999999999999999999999999999999999999999999999998 778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHH
Q 011863 128 LGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (476)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 207 (476)
+++..+.++.++++++++..++..+.++++.+++.++|+.+.+.+|+++..++.|+..+....++++|+.||++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998876665567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHHHHHHHHHHHhcCC--CCcc-CCCChhhHHhHHHHHHHHHH
Q 011863 208 LASLLVHLLVTWLFVYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGGC--PRTW-TGFSMEAFSDLWEFVKLSVA 280 (476)
Q Consensus 208 i~~~~~~i~l~~~li~~~----~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~p 280 (476)
+++.++|++++++++++. ++|+.|+++|+.+++.+..+...+++++++. +.+. .++.+.+++.+|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999753 4799999999999998887777666665421 1111 12223455778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011863 281 SGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVVTSIA 343 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~ 343 (476)
.++++..+...+.+++.+++++|+.+++....+.. +.+|+++|++|++++++..+.+..++++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~ 324 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAV 324 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876653322111 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhhhhcCC--cH---HHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHH
Q 011863 344 IGVFFFILILIFHNELALIFSS--SE---AILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIG 418 (476)
Q Consensus 344 ~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~ 418 (476)
++++.++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||++.++++++++.|+++
T Consensus 325 ~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ 404 (464)
T PRK00187 325 VMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVG 404 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999964 44 789999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863 419 VPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 459 (476)
Q Consensus 419 i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+|+.+++.+.+++|+.|+|++.. +++.+..++...+++.+
T Consensus 405 ipl~~ll~~~~~~g~~Gvw~~~~-i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 405 APLAWLLAFTLGWGAVGVWWGLA-LGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHhccCCCceeeHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999 99999988776666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.2e-46 Score=377.34 Aligned_cols=417 Identities=20% Similarity=0.390 Sum_probs=376.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011863 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (476)
Q Consensus 45 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 124 (476)
++.++..|++++.+.|.+++++...+...+|+.+++++|++++++++++.++... ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456789999999999999999999999999999999999999999999998777 677899999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
++++++.++.++.++++.+++..++ +.+.++++.+++.++++.+.+.+|+++.+++.++..+...+++++++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999887766 778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccCCCChhhHHhHHHHHH
Q 011863 204 AWVSLASLLVHLLVTWLFVYK----MQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR---TWTGFSMEAFSDLWEFVK 276 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~----~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 276 (476)
++.++++.++|+++++++++. .++|+.|+++++.+++++..++..+++++++... .+.++.+.+++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 2579999999999999999998888877652211 112223345567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHH
Q 011863 277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVV 339 (476)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~ 339 (476)
.++|.+++...+...+.+.+.+.+++|+.+++....+.. +.+++++|++|++++++..+.+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999865543222111 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHH
Q 011863 340 TSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGV 419 (476)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i 419 (476)
+++.++++.++++..+++++.++|++|+|+.+.+..++++..+..++++++....++++|.||++.++++++++.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHH
Q 011863 420 PLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDR 463 (476)
Q Consensus 420 ~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~ 463 (476)
|+.+++.+.+++|+.|+|++.. +++.+..++..+++++.+|+.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLI-IGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899999999999 999999998888887766655
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.3e-46 Score=375.23 Aligned_cols=409 Identities=18% Similarity=0.215 Sum_probs=367.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcccc
Q 011863 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (476)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (476)
+..|++++.+.|.+++++...+.+++|+.+++|+ |++++++++++.++..+ ...+..+++.+.+++++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 4678999999999999999999999999999995 99999999999999998 777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHH
Q 011863 128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (476)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (476)
+++..++++.++++++++..++ +.++++++.+++.++++.+.+.+|+++..++.++..+.....+++|+.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999887665 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-CCChhhHHhHHHHHHHHHHHHHHH
Q 011863 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWT-GFSMEAFSDLWEFVKLSVASGVML 285 (476)
Q Consensus 207 ~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~ 285 (476)
++.+.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++.+.++. +..+.+++.+|+++++|+|.+++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9999999999999999888899999999999999999988887776653332221 111234567899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 011863 286 CLENWYYRVLILMTGNLQNAKIAVDALSIW-------------------VRVSNELGAGNGKGARFATIVSVVTSIAIGV 346 (476)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (476)
....+.+.+.+.+.+++|+.+ +.+++++. |.+|+++|+||++++++..+.+.++++..++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~-~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGSAL-TVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888632 23343332 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHhhhhcCC-cHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHH
Q 011863 347 FFFILILIFHNELALIFSS-SEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILL 425 (476)
Q Consensus 347 ~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l 425 (476)
+.++++..+++++.++|++ |+|+.+.+..++++..++.++++.+.+..+.++|.||++.++..+... +++++|+.+++
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll 405 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFIL 405 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHH
Confidence 9999999999999999995 789999999999999999999999999999999999999999999877 77899999998
Q ss_pred HHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 011863 426 GWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDRE 464 (476)
Q Consensus 426 ~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~ 464 (476)
. +.+|+.|+|+++. +++.+..++..+++++ +|+|.
T Consensus 406 ~--~~~G~~Gvw~a~~-~~~~~~~~~~~~~~~~-~~~~~ 440 (453)
T PRK09575 406 P--KWLGVDGVWLAMP-LSNIALSLVVAPMLWR-DVKKL 440 (453)
T ss_pred H--HHHCcchHhhHHH-HHHHHHHHHHHHHHHH-HHHHc
Confidence 7 4589999999999 9999988877766654 56553
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=6.5e-46 Score=367.35 Aligned_cols=403 Identities=16% Similarity=0.166 Sum_probs=348.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcccc
Q 011863 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHL-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (476)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (476)
++.|+++++++|.++++++..+.+.+|+.++||+ |++++++++++.++.++ ...+..+++.+..++++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4578999999999999999999999999999998 67899999999999998 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHH
Q 011863 128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (476)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (476)
+++..++++.++++++++..++ ..+.++++.+++.++++.+.+.+|+++..++.|+..+..+..+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999888765 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcC-CC-CccCCCChhhHHhHHHHHHHHHHHHHH
Q 011863 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGG-CP-RTWTGFSMEAFSDLWEFVKLSVASGVM 284 (476)
Q Consensus 207 ~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (476)
++++.++|+++++++++.+++|+.|+++|+.+++++.+++..+++.+++ .+ .+.+.++.+..+.+|++++++.|.++.
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988899999999999999999888777776542 11 111111111124689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 011863 285 LCLENWYYRVLILMTGNLQNAKIAVDALSIW-------------------VRVSNELGAGNGKGARFATIVSVVTSIAIG 345 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 345 (476)
...+...+.+.+.+++++|+..+| ++++. |.+|+++|++|++++++..+.+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G~~alA--a~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLGSDIIA--VNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987554 44433 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccC---cchhhHHHHHHHHHHHHHHHH
Q 011863 346 VFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSG---WQSIVAYINLGCYYLIGVPLG 422 (476)
Q Consensus 346 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g---~~~~~~~~~~~~~~~~~i~~~ 422 (476)
.+.+++++++++++.++|++|+|+.+.+..++++..+..+......+..+++++.+ |++.++.+++++.|+..+
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~--- 399 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL--- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999998876443334444444455555 599999999988654222
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHH
Q 011863 423 ILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDR 463 (476)
Q Consensus 423 ~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~ 463 (476)
.. +++|+.|+|++.. +++.++.++..++++| +||+
T Consensus 400 --~~--~~~g~~Gvw~a~~-~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 400 --TL--PWLGNHGLWLALT-VFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred --HH--HHcCchHHHHHHH-HHHHHHHHHHHHHHHH-HHhc
Confidence 22 4579999999999 9999999988776655 4865
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.5e-37 Score=302.25 Aligned_cols=425 Identities=45% Similarity=0.751 Sum_probs=402.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
.+++.|++++++.|+++..+...+...+++.++||+|+.++++.+++....+.....+..|+..+..++.+|++|.++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36788999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHH
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (476)
......+++.......+++...++.+.++++..++.++++...+..|.+...+..+..........++|++++.....+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHHHH
Q 011863 207 SLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLC 286 (476)
Q Consensus 207 ~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 286 (476)
.....++++.+++++++..++|+.|++++..+++++.......|.........|..++++ ++.++++++.++|.+++..
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999988888766555666667777 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHH-------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH
Q 011863 287 LENWYYRVLILMTGNLQNAKIAVDALSIW-------------------VRVSNELGAGNGKGARFATIVSVVTSIAIGVF 347 (476)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
.+++.+.+...+.+.++++.+.+.+.+++ .++++.+|+++++++|...+.....++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999877776666554 68999999999999999999999999999999
Q ss_pred HHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 011863 348 FFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGW 427 (476)
Q Consensus 348 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 427 (476)
.+..++...+.+..+|++|+|+.+...+..++++...++++.+.+..+..++.|+++...++++.+.+++++|+.+++.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011863 428 VFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALR 473 (476)
Q Consensus 428 ~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (476)
..++|..|.|.+.. .+..++.........+.||+++.++.+++..
T Consensus 422 ~~~~g~~glw~G~~-~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~ 466 (473)
T KOG1347|consen 422 FTKFGVKGLWIGIL-LGFSVQTLVLAIVTARTDWKNQAEKAFARII 466 (473)
T ss_pred EEecCceEEEeehH-HHHHHHHHHHHHheeeccHHHHHHHHHHHHH
Confidence 89999999999999 9988888888888888999999999888654
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.2e-33 Score=287.51 Aligned_cols=396 Identities=15% Similarity=0.108 Sum_probs=328.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccccHHH
Q 011863 54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLEL-AAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGV 130 (476)
Q Consensus 54 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 130 (476)
+.|.+.-.++++++..+.+++|..+++| +|++++ ++++++.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5688888999999999999999999999 899999 899999999987333333 468888777776654322 57777
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHhhHHHHHHc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHH
Q 011863 131 YMQRSWIVLFICC-VLLLPL-YVFASPVLKLL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (476)
Q Consensus 131 ~~~~~~~~~~~~~-i~~~~~-~~~~~~i~~~~--~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (476)
.+.+......+.+ ++..++ +.+++++..++ +.+++..+.+.+|+++..++.++..+.....+++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555444 333444 77888888877 4467777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHH--HHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHH
Q 011863 207 SLASLLVHLLVTWLFVYKMQLGLIGTA--ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM 284 (476)
Q Consensus 207 ~i~~~~~~i~l~~~li~~~~~gi~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (476)
+++..++++...+++. .++|..|++ +++.+++.+..++.+++.+|++.+.+. +++ .+++.+|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 9999888776543333 568999998 999999999888877776654322111 111 2346788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH--------------H----HHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 011863 285 LCLENWYYRVLILMTGNLQNAKIAVDALSI--------------W----VRVSNELGAGNGKGARFATIVSVVTSIAIGV 346 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i--------------~----~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (476)
+....+...++..+.+.+|+.+++...++. . |.+++++|++|+++.++..+++.++...++.
T Consensus 236 ~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
T TIGR01695 236 SSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTI 315 (502)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888775544322211 0 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHH
Q 011863 347 FFFILILIFHNELALIFSS----SEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLG 422 (476)
Q Consensus 347 ~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~ 422 (476)
+.++++.++++++.++|.+ |+|..+.+..++++++++.++.+++.+..+.+++.||++.+++.+... .++++|+.
T Consensus 316 ~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~ 394 (502)
T TIGR01695 316 PSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLS 394 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHH
Confidence 9999999999999999976 567788999999999999999999999999999999999999999998 78899999
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863 423 ILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 459 (476)
Q Consensus 423 ~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+++. +.+|..|+|+++. +++.+..++..++++|+
T Consensus 395 ~~l~--~~~G~~G~~~a~~-i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 395 LLLI--FPLGLVGIALATS-AASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHH--HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9887 6799999999999 99999988887777665
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.5e-33 Score=284.14 Aligned_cols=395 Identities=13% Similarity=0.137 Sum_probs=328.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHH
Q 011863 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (476)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 133 (476)
.|.+.|.+++++...+.+++|+.+++| +|++++|+++.+.++..++......|++++..+.++|+.|++|++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 7999999999999999984444557999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH
Q 011863 134 RSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLL 212 (476)
Q Consensus 134 ~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~ 212 (476)
.++.+.++.+++..++ +.+.+++...+..+++. ..++++..+..++..+.....+.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999887665 67777777766555543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC-C--CccCCCChhhHHhHHHHHHHHHHHHHH
Q 011863 213 VHLLVTWLFVYK-----MQLGLIGTAITLSFSWWVLIFGMFGYVACGGC-P--RTWTGFSMEAFSDLWEFVKLSVASGVM 284 (476)
Q Consensus 213 ~~i~l~~~li~~-----~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (476)
+++.++..++.. .+.|+.|+++++.+++.+..++..++.+|++. + ..+.++.+.+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 23578888899999998888877666554421 1 111112233456889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC----Cc-HHHHHHH---H----------------H----HHHHHHHhhcCCChhhHHHHHHH
Q 011863 285 LCLENWYYRVLILMTGNL----QN-AKIAVDA---L----------------S----IWVRVSNELGAGNGKGARFATIV 336 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~----~~-~~~a~~~---~----------------~----i~~~~s~~~g~~~~~~~~~~~~~ 336 (476)
+....+...+++.++++. |. ...+.+. + + ..|.+++..|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988777543 11 0111111 1 0 01999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHH
Q 011863 337 SVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYL 416 (476)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~ 416 (476)
+.++...++.|+++++.++++++..+|.++++ +..+++++++..++.+.+....+++++.||+|..++.+.++ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999876543 57789999999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863 417 IGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 459 (476)
Q Consensus 417 ~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+++++.+.+...+++|..|+|+++. +++.+..++..++.+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~-i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFI-ITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8999988876557899999999999 99999999888877764
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.5e-32 Score=264.01 Aligned_cols=320 Identities=25% Similarity=0.493 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHHHHHHHH
Q 011863 60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL 139 (476)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 139 (476)
|.+++++...+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.++++.|++|+|+.++..++.+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999998887 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHH
Q 011863 140 FICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVT 218 (476)
Q Consensus 140 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~ 218 (476)
.+.+++.+++ +.+.+++..+++.+++..+.+..+++++.++.++..+.....+++++.||++..++.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888766 788999998888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CCcchHHHHHHHHHHHHHHHHHHHHHhc-CCCCccCCCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011863 219 WLFVY-KMQ-LGLIGTAITLSFSWWVLIFGMFGYVACG-GCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVL 295 (476)
Q Consensus 219 ~~li~-~~~-~gi~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 295 (476)
+++++ .++ +|+.|+++++.+++++..++..++.+|+ +.+.++++..+.+++.+|++++++.|..+.++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 567 7899999999999999988888777653 22222222233345688999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011863 296 ILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNE 358 (476)
Q Consensus 296 ~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (476)
+.+.+++|+++++....+.. |.++++++++|.++.++..+++.++.+.++++.++++.+++++
T Consensus 240 ~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (342)
T TIGR00797 240 ALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREF 319 (342)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998765543221111 9999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcHHHHHHHHHHHHHH
Q 011863 359 LALIFSSSEAILQVVSKMSILL 380 (476)
Q Consensus 359 i~~l~~~~~~~~~~~~~~l~~~ 380 (476)
+.++|++|+|+.+.+..++++.
T Consensus 320 i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 320 IARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999998888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.5e-30 Score=254.42 Aligned_cols=384 Identities=9% Similarity=0.018 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHH
Q 011863 54 LWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYM 132 (476)
Q Consensus 54 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 132 (476)
++|.+.....+++...+.+++...+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 79999999999999999755555888888888899988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHH
Q 011863 133 QRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL 211 (476)
Q Consensus 133 ~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 211 (476)
.+++.+.++.+++.+++ +.+.+++...+..+++. ..++.+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887665 88888988877766642 24566666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCCCChhhHHhHHHHHHHHHHHHHHHHHHHH
Q 011863 212 LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGC-PRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENW 290 (476)
Q Consensus 212 ~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 290 (476)
++|+.+ .++.+.. .|+.|+++|+++++.+......+++.|++. +.+..++ +.+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 499999999999999988777776665422 1111111 22346788999999999999999999
Q ss_pred HHHHHHHHHh-cCCcHHHHHHHHHHH--------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011863 291 YYRVLILMTG-NLQNAKIAVDALSIW--------------------VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFF 349 (476)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~a~~~~~i~--------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
....++.+++ ++|+++++ .|+.. |.++++ +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g~~~vg--~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYSWDEVG--IWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCCHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988885 88876554 33322 889884 6788999999999999999999999
Q ss_pred HHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011863 350 ILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVF 429 (476)
Q Consensus 350 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 429 (476)
+.+.++++++.+++.+|+ ++.+.+++++++++.++...+......+.+.++++......+.. .++++|+.+++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999876 66688899999999999888888877777888888777777766 888999999988 8
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 011863 430 HQGVMGIWAGMIFGGTAVQTLILAIITM 457 (476)
Q Consensus 430 ~~g~~g~~~a~~~i~~~~~~~~~~~~~~ 457 (476)
.+|..|+++++. +++.+...+......
T Consensus 384 ~~G~~G~a~a~~-is~~~~~~~~~~~~~ 410 (416)
T PRK15099 384 LHGALGAAQAYM-ATYIVYFSLCCGVFL 410 (416)
T ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999 999999986665544
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.97 E-value=1.2e-26 Score=230.30 Aligned_cols=369 Identities=17% Similarity=0.145 Sum_probs=317.5
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011863 82 LGDL-ELAAISIANTVVVAFNFGLL-LGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLK 158 (476)
Q Consensus 82 lg~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~ 158 (476)
+|.+ +..+|..+.++..++...+. .++.++..|..++.. ++++++.++..+....+..+.++.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 57799999999998444454 468899999999998 8888999999998888888888777665 889999998
Q ss_pred Hc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHH
Q 011863 159 LL--GQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLG---LIGTA 233 (476)
Q Consensus 159 ~~--~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---i~g~a 233 (476)
.+ +.+++..+.+.+++++..+..++..+..++.+++|+++|...+....++.++..+...+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 4467888999999999999999999999999999999999999999888887766654444433 56 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 011863 234 ITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALS 313 (476)
Q Consensus 234 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 313 (476)
+|..++.++..++.....+|...+.+. +++.+ .+..|++++...|..+......+...+++.+.+.+++..++.-.|+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA 239 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRP-KFDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYA 239 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccc-cCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 999999999998888887776443222 12222 2468899999999999999999999999999999988776654443
Q ss_pred HH------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcC----CcHHHHH
Q 011863 314 IW------------------VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFS----SSEAILQ 371 (476)
Q Consensus 314 i~------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~ 371 (476)
.. |..++...++|.++.++..+++.+..+.+.+|.++++..+++++++++. .|+|..+
T Consensus 240 ~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~ 319 (451)
T PF03023_consen 240 QRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQ 319 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHH
Confidence 22 9999999999999999999999999999999999999999999999974 3667788
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHH
Q 011863 372 VVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLI 451 (476)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~ 451 (476)
.....+.+++++.++.+++..+...+++.||+|.++.++.+. .++++.+.+++. +.+|..|+.+++. ++..+..++
T Consensus 320 ~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~--~~~g~~Glala~s-l~~~i~~~~ 395 (451)
T PF03023_consen 320 LTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLV--PFFGVAGLALATS-LSAIISALL 395 (451)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHH
Confidence 899999999999999999999999999999999999999999 889999998888 8899999999999 999999998
Q ss_pred HHHHHhcC
Q 011863 452 LAIITMRC 459 (476)
Q Consensus 452 ~~~~~~~~ 459 (476)
..+.++|+
T Consensus 396 l~~~l~r~ 403 (451)
T PF03023_consen 396 LYILLRRR 403 (451)
T ss_pred HHHHHHHH
Confidence 88888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.96 E-value=1.6e-24 Score=211.31 Aligned_cols=402 Identities=11% Similarity=0.051 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChh-HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhcCCccccH
Q 011863 52 KKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDL-ELAAISIANTVVVAFNFGLLLG-MASALETLCGQAFGGKKYYML 128 (476)
Q Consensus 52 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~~ 128 (476)
+.++|.+.-....++++.+.+++...+++. +|++ ...++.++.++.+++--.+..| ++++..|...++..+++.++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 567888888889999999999999999998 8985 6789999999999855555544 478889999999877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CCC--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHH
Q 011863 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLL-GQP--DDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~-~~~--~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (476)
++..+........+.+..++. .++.+++.+.. ... ++....+....+++.+..++..+.....+.++..+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777766665666666666655 67777777444 332 33333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHH
Q 011863 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVM 284 (476)
Q Consensus 205 ~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 284 (476)
...+..++.-+.....+..+......+.++|+.++.+.+.++.+..++|.+...+. ++..++ +.+|++.+.-.|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p-~~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKP-RFGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCCCCc-hhHHHHHHHHHHHHHH
Confidence 99999888877555555543322477889999999999999999998887433322 222222 5788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 011863 285 LCLENWYYRVLILMTGNLQNAKIAVDALSIW------------------VRVSNELGAGNGKGARFATIVSVVTSIAIGV 346 (476)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (476)
....+++..+++.+.+.+.+..++.-.|+-- |..|++..++|.++.++..+.+.+.+++.++
T Consensus 245 ~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~l 324 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTL 324 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997665544333221 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHhhhhcC----CcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHH
Q 011863 347 FFFILILIFHNELALIFS----SSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLG 422 (476)
Q Consensus 347 ~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~ 422 (476)
|.++++..+++++.+++. .+++........+..++++.++..+..++...++|.+|+|.++++++++ .++|+.+.
T Consensus 325 P~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~ 403 (518)
T COG0728 325 PASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLN 403 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHH
Confidence 999999999999999973 3456678889999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863 423 ILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 459 (476)
Q Consensus 423 ~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
+.+. +.+|..|.+.+.. ++.++.+.++++.++|+
T Consensus 404 ~~l~--~~~~~~giala~s-~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 404 LLLI--PPLGHVGLALATS-LAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHH--hhccchHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 7777 7899999999999 99888888888888776
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.95 E-value=1.3e-23 Score=213.00 Aligned_cols=380 Identities=9% Similarity=0.096 Sum_probs=297.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHH
Q 011863 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLG 129 (476)
Q Consensus 51 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 129 (476)
.++..+-+.+..++++.....+++...+++| +|++++|.++.+..+..++......|++++.. |. ++ +.+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~--~~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QD--ISH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---cc--CCH
Confidence 3567888889999999999999999999999 89999999999999999866667778877642 21 12 112
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHH
Q 011863 130 VYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSL 208 (476)
Q Consensus 130 ~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 208 (476)
+..+..+.+....+++..++ +.+++++...+ ++++. ...+++..+..++..+.....+.+++.++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 44555666667777666555 45555554444 44432 34577777888888888889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHHHHHH
Q 011863 209 ASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLE 288 (476)
Q Consensus 209 ~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 288 (476)
...++.....+.+.. .+.|+.+.+++..+++.+..++..+...+ +.+.++ ++ +++..|++++++.|...++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 888887777766665 46899999999999988776654433322 222111 12 2356789999999999999999
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHHHHHHH------------------HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011863 289 NWYYRVLILMTGNL-QNAKIAVDALSIW------------------VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFF 349 (476)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~~~a~~~~~i~------------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
.+...++..+++.+ |+++++....+.. |..++. ++|.++.++.+++..++...+++|++
T Consensus 224 ~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 224 YLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765 5544443221111 777764 57888999999999999999999999
Q ss_pred HHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011863 350 ILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVF 429 (476)
Q Consensus 350 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 429 (476)
+++.++++++..++.+++ +..+...++++++..++.........++++.||+|..+..+++. .++.+|..+++. +
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~--~ 376 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG--Q 376 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH--h
Confidence 999999999999987765 77889999999999999999999999999999999999999888 777788887777 6
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 011863 430 HQGVMGIWAGMIFGGTAVQTLILAIITMR 458 (476)
Q Consensus 430 ~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
.+|..|+++++. +++.+...+..+...|
T Consensus 377 ~~G~~g~a~a~~-i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 LAGLIGVALGFL-LVQIINTILSYFLMIK 404 (492)
T ss_pred hccHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 789999999999 9999988877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.92 E-value=3.5e-21 Score=194.81 Aligned_cols=373 Identities=15% Similarity=0.137 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccH
Q 011863 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (476)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (476)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++.+++......|++.+..+.++++..++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45788899999999999999999999999999 89999999999999999967777799999999999988765555555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHH
Q 011863 129 GVY-MQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVS 207 (476)
Q Consensus 129 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 207 (476)
... ....+......+++.........+. + +.....+++..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 544 4444444444443333332222211 1 2233457788899999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHHHHH
Q 011863 208 LASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCL 287 (476)
Q Consensus 208 i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 287 (476)
+.. ..-+.....+.. .......++...+..........+..+++.+.....++ ..++..|++++.++|....+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR-FSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC-chhHHHHHHHHHhhHHHHHHHH
Confidence 444 222222222221 24555566666666555555555543221111111112 1357888999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHH-------------H--H--HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 011863 288 ENWYYRVLILMTGNL-QNAKIAVDALS-------------I--W--VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFF 349 (476)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~~a~~~~~-------------i--~--~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
..+...++.++++++ |+.+++....+ + . |.+++...++|.++.++..+...++...++.|..
T Consensus 229 ~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 308 (480)
T COG2244 229 NFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPAL 308 (480)
T ss_pred HHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876 33333321100 0 0 9999999999999999999999999999999999
Q ss_pred HHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011863 350 ILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVF 429 (476)
Q Consensus 350 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 429 (476)
+++.++++++..++.+++ +..+...+.++++..++.+........+++.|+++..++.+.++ .+.++.+.+++. +
T Consensus 309 ~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li--~ 383 (480)
T COG2244 309 LGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLI--P 383 (480)
T ss_pred HHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHH--H
Confidence 999999999999988765 55589999999999999999999999999999999999999999 788888999888 8
Q ss_pred cCCcchhhHHHHHH
Q 011863 430 HQGVMGIWAGMIFG 443 (476)
Q Consensus 430 ~~g~~g~~~a~~~i 443 (476)
.+|..|+..++. .
T Consensus 384 ~~g~~g~~~a~~-~ 396 (480)
T COG2244 384 RFGLIGAAIATA-S 396 (480)
T ss_pred hhhhhhHHHHHH-H
Confidence 899999999886 5
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=4e-21 Score=192.30 Aligned_cols=206 Identities=16% Similarity=0.180 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
.++..|++++.++|.++.++++.....+|+.+++++|++++++++++.++..+ ...+..|++++.+++++|++|++|++
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~~ 309 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRLL 309 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45678999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--Ch---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhh
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ--PD---DVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKT 200 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~--~~---~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 200 (476)
++++..+.++.++.+.+++..++ +.+.+++...+.. ++ ++.+.+..|+++.+++.++..++.++.+.+||.||+
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 99999999999999999877665 8889999988853 33 688999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 011863 201 MVIAWVSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (476)
Q Consensus 201 ~~~~~~~i~~~-~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~ 253 (476)
+.+++.+++.. ++++++++++.+.+++|+.|+|+++.+++++..++....+++
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999995 999999999998888999999999999999888777666544
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.87 E-value=6e-20 Score=182.27 Aligned_cols=209 Identities=21% Similarity=0.252 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011863 45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK 124 (476)
Q Consensus 45 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 124 (476)
+.+++..|++++.+.|..++++.......+.+.+++++|++.+++++++.++.++ ...+..|++++++++++|++|+||
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4455789999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 125 YYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
++++++..+.+..+++++++...++ +.+.+++..+|.+++++.+.+..++++..+..++...+.+..+.+||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999888765 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 011863 204 AWVSLAS-LLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGG 255 (476)
Q Consensus 204 ~~~~i~~-~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~ 255 (476)
++.++++ .++.+++.+++.+.. +|..|+|++..+++.+..++..+++++++
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 567788888888755 89999999999999999999988888763
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.86 E-value=1.5e-19 Score=181.08 Aligned_cols=211 Identities=14% Similarity=0.107 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
.++..|++++.+.|..++++...+...+.+.+++++|++++++++++.++.++ ...+..|++++.++.+++++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34678999999999999999999999998999999999999999999999999 78899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHH
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (476)
++++..+.+..++.+.++...++ +.+.+++..+|.+|+++.+.+..++++.++..++..++.+..+.+||.||++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999887766 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011863 206 VSLAS-LLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR 258 (476)
Q Consensus 206 ~~i~~-~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~ 258 (476)
.++.. .++.+++.+++.+..++|+.|+|++..+++.+..++..++++++++++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99988 578888888887777899999999999999999988888777664443
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=7.6e-20 Score=183.57 Aligned_cols=207 Identities=20% Similarity=0.191 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
.++..|++++.++|.+++++.......++..+++++|++++++++++.++.++ ...+..|++.+.++.++|++|+||++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 35578999999999999999999999999999999999999999999999998 78889999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHH
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (476)
++++..+.++.++...+++..++ +.+.+++..++..|+++.+.+..|+++..+..++..++....+.+||.||++.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999999887665 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 206 VSLASL-LVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 206 ~~i~~~-~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
.++++. ++++++.+++.+..++|+.|+++++.+++++..++..+++++.
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 7899999998887789999999999999999998887776653
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=3.6e-19 Score=177.98 Aligned_cols=205 Identities=14% Similarity=0.195 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGD-LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (476)
+++..|++++.+.|..+++....+...+...+++++|+ +++++++++.++..+ ...+..|++.+.++.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 45678999999999999999999999999999999985 689999999999998 8889999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC-ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ-PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~-~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
|++++..+.++.+++..+++.+++ +.+.+++..+++. |+++.+.+.+|+++..++.++..++.+..+++||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999888766 7899999999985 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
++.++...++++++.+++... +|+.|+|+++.+++++...+..++++++
T Consensus 388 ~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999998888899888887653 7999999999999999888777766654
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=2.6e-17 Score=167.66 Aligned_cols=229 Identities=17% Similarity=0.126 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccH
Q 011863 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (476)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (476)
+..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++.++....+..+++++..|.++++.|++|+++.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46789999999999999999999999998855589999999999999998844456889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~----~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
++.+++.......++++.+++ +.++++++.++.. +++..+.+..++++.+++.++..+.....+.+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 999999999999999988776 8899999988755 45778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHH
Q 011863 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGV 283 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 283 (476)
++.++...+++++++++++.. +|..|+++|+.+++.+...+..++.+|+..... ..+..+++.+...+..+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~as~~ 450 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGIL-------PFGVLKVLAKLVIASAI 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-------chHHHHHHHHHHHHHHH
Confidence 999999999999999998754 799999999999999998888877776421111 11344556666665555
Q ss_pred HHH
Q 011863 284 MLC 286 (476)
Q Consensus 284 ~~~ 286 (476)
+..
T Consensus 451 m~~ 453 (502)
T TIGR01695 451 IGG 453 (502)
T ss_pred HHH
Confidence 433
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.79 E-value=2.2e-17 Score=163.92 Aligned_cols=186 Identities=15% Similarity=0.113 Sum_probs=168.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHH-------------------HHHHHhhcCCChh
Q 011863 269 SDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQ-NAKIAVDALSIW-------------------VRVSNELGAGNGK 328 (476)
Q Consensus 269 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~i~-------------------~~~s~~~g~~~~~ 328 (476)
+..|++++.++|..++++...+...+++.++++++ +.+++ +.++. +.+|+++|+||++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alA--a~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLG--GVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45779999999999999999999999999999984 43343 33222 9999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHH
Q 011863 329 GARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAY 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 408 (476)
++++..+.+..++++.++++.+....+.+++..+++.|+|+.+.+.+++++..++.++........+.+++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 011863 409 INLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 458 (476)
Q Consensus 409 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
.++++ .++|+++.+++.+.+++|+.|+++|+. +++.+..++..+++.|
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~-is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATV-IAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999 788999999999878899999999999 9999988776666654
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=6.5e-15 Score=146.51 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccH
Q 011863 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (476)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (476)
+..|++++...|..++....++...+|+.+.+++++.++++++.+.++.+++...+..++++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 35789999999999999999999999999999999999999999999999977788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~----~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
++.+++++...+.+.+|.+++ +.++++++..+.. +.+-.+.....+++++++.++..+...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999876 8999999987642 44556778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
+..++++.++|++++.++... +|..|.++|+.++.++..++..++++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888864 8999999999999999999988888876
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=1.5e-15 Score=154.16 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGD------L---ELAAI-SIANTVVVAFNFGLLLGMASALETL 115 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~~ 115 (476)
.++..|++++.+.|.+++++...+...+|+.++++ +++ + .+|.+ +.+.++..+ ...+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999988 432 1 22333 345566676 567789999999999
Q ss_pred HHhhhcCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 011863 116 CGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFL 194 (476)
Q Consensus 116 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l 194 (476)
++++.|++|+++.++..++...+....+++.+++ ..++++++..+.+++ .+.+++++.+++.++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888776 788899988876543 35678999999999999999999999
Q ss_pred HHchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 195 QSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 195 ~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
++.||++..++.+++..++|++++++++....+|+.|+++++.+++++...+..++.+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988743458999999999999999988888777653
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=4e-18 Score=145.98 Aligned_cols=160 Identities=25% Similarity=0.394 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHHHHHHHH
Q 011863 60 PTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVL 139 (476)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 139 (476)
|.++++++..+...+|+.+++++|++++++++++.++..+ ...+..|++++..+.++|++|++|++++++.++.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHH-HHHHHH
Q 011863 140 FICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASL-LVHLLV 217 (476)
Q Consensus 140 ~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~l 217 (476)
.+.+++..++ +.+.+++..+++.++++.+.+.+|+++..++.++..+.....++++|.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999998877 88999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 011863 218 TWL 220 (476)
Q Consensus 218 ~~~ 220 (476)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=1.2e-13 Score=140.13 Aligned_cols=201 Identities=14% Similarity=0.012 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
++..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3567999999999999999999999999999999 79999999999999998745555566777788888886 57788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHH
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW 205 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 205 (476)
+.++.+++...+...+++|..++ ..++++++..+.+++ +..+...++++++...+..+.......+++.||++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999999998776 788899988776543 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 206 VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 206 ~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
.+++..+++++..+.+.. .+|+.|+++++.+++.+...+..++..|+
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887766664 37999999999999998888887777553
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.68 E-value=2.7e-13 Score=133.00 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccH
Q 011863 49 IESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (476)
Q Consensus 49 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (476)
+..|++.+...|+.++...+++..++|+.+-+.+.+.+.+.+..+.+++++..-.+..++++...|..|++..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 46889999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 129 GVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQ----PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 129 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~----~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
++..+.++.+.+++++|..++ ..+++|+...+.. +++-.......+..+.++.++..+..++...+.+.+|+|.+
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999877 8999999977633 33445667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 204 AWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
+++.+++.++|+.+++.+... +|..|.++++.++.++.+.++++..+|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999776654 7888999999999999988888888776
No 28
>PRK15099 O-antigen translocase; Provisional
Probab=99.65 E-value=9.1e-14 Score=137.92 Aligned_cols=200 Identities=7% Similarity=-0.039 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (476)
+++..|++++++.|..+++....+....|+.++++ +|++++|+|+.+.++.+.+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35578999999999999999999999999999985 99999999999999988636789999999999999995 567
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHH
Q 011863 126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (476)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (476)
++.++.+++........+++.+++ ++++++++.++..++ ++.+.+++++++++.++...+......+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999998888888877766 789999999887654 34467788998888888887777777777888998889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 011863 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (476)
Q Consensus 205 ~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~ 253 (476)
...+...+++++++++++.. +|..|+++++.+++.+...+......+
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999865 799999999999999998877765553
No 29
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.61 E-value=8.3e-14 Score=134.61 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-------------------HHHHHhhcCCChhhHHHHHHHHHHH
Q 011863 280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-------------------VRVSNELGAGNGKGARFATIVSVVT 340 (476)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-------------------~~~s~~~g~~~~~~~~~~~~~~~~~ 340 (476)
|.+++++...+...+++.+++++|+++++ ++++. |.+++++|++|+++.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLA--AVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHH--HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 67788889999999999999999876544 33222 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHH
Q 011863 341 SIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVP 420 (476)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~ 420 (476)
.+.+++++++++.++++++.++++.|++..+.+..+++++.++.++.+......+.+++.||.+...+.+.++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888899999999999999999999999999999999999999999988 678888
Q ss_pred HHHHHHH-hhc-CCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 011863 421 LGILLGW-VFH-QGVMGIWAGMIFGGTAVQTLILAIITMR 458 (476)
Q Consensus 421 ~~~~l~~-~~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
+.+++.. ..+ +|..|++++.. ++.++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~-~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATV-ISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 8888875 445 67999999999 9999988877766665
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.60 E-value=4.9e-12 Score=117.94 Aligned_cols=245 Identities=19% Similarity=0.194 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHH
Q 011863 55 WHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (476)
Q Consensus 55 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 133 (476)
+|.+.....+++...+.+++...+++| +|++++|.++....+.+++......|++++..+.++++..+ ++..+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 577888899999999999999999999 89999999999999999856666899999998888887432 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHH
Q 011863 134 RSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLV 213 (476)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~ 213 (476)
.......+.+++......... .+..+ +... .+........++........+++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333322211 33332 2211 122222222257788888999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011863 214 HLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYR 293 (476)
Q Consensus 214 ~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 293 (476)
..++...++.. +.++.+..++..++.++...+..++.+|+. +. ++.+.+++..|++++.+.|..++++...+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RP---RFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc---cccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766663 345899999999999888888887777653 11 22222257888999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHH
Q 011863 294 VLILMTGNLQNAKIAVDALSIW 315 (476)
Q Consensus 294 ~~~~~~~~~~~~~~a~~~~~i~ 315 (476)
.+..+++++.+.+ .++.|++.
T Consensus 227 ~d~~ii~~~~g~~-~vg~Y~~a 247 (273)
T PF01943_consen 227 IDRLIIGYFLGPE-AVGIYSVA 247 (273)
T ss_pred hHHHHHHHhCCHH-HHHHHHHH
Confidence 9999988875543 24455444
No 31
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.2e-12 Score=132.71 Aligned_cols=185 Identities=20% Similarity=0.231 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011863 47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY 125 (476)
Q Consensus 47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 125 (476)
.++..|++++.+.|...+++...+.+.+|+.++++ +|++++|.|+.+.++... ...+...++....|..++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46789999999999999999999999999999999 799999999988888888 8889999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHH
Q 011863 126 YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (476)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (476)
++.++..++.+.+....+++..++ ..++++++..+..++. ..+...+++.++..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 7888899987765542 2377889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Q 011863 205 WVSLASLLVHLLVTWLFVYKMQLGLIGTAITL 236 (476)
Q Consensus 205 ~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~ 236 (476)
+.+.++.++|++++++++.. +|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999964 7889999999
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.54 E-value=7.4e-15 Score=125.64 Aligned_cols=145 Identities=22% Similarity=0.437 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH-------------HH----HHHHHhhcCCChhhHHHHHHHHHHHHH
Q 011863 280 ASGVMLCLENWYYRVLILMTGNLQNAKIAVDALS-------------IW----VRVSNELGAGNGKGARFATIVSVVTSI 342 (476)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------i~----~~~s~~~g~~~~~~~~~~~~~~~~~~~ 342 (476)
|.+++++...+.+.+++.+++++|+.+++....+ +. +.+|+++|++|+++.++..+.+..++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 7889999999999999999999987655421111 11 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHH
Q 011863 343 AIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLG 422 (476)
Q Consensus 343 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~ 422 (476)
.+++++++.+.++++++.++|++|+|+.+.+..++++..++.++.+......+++++.||++..++.+..+.|++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999998
Q ss_pred HH
Q 011863 423 IL 424 (476)
Q Consensus 423 ~~ 424 (476)
|+
T Consensus 161 yl 162 (162)
T PF01554_consen 161 YL 162 (162)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.29 E-value=9.2e-09 Score=94.59 Aligned_cols=216 Identities=16% Similarity=0.170 Sum_probs=149.7
Q ss_pred HHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHHHH
Q 011863 71 MFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPL 149 (476)
Q Consensus 71 ~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (476)
.+++...+++| +|++++|.|+....+..+.......|+.+.... ..++++++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999 899999999999999998455556777776544 223556666777666665555544444332
Q ss_pred HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011863 150 YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGL 229 (476)
Q Consensus 150 ~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi 229 (476)
.. .+...+ .+++ ...++....+..+...+.....+.+++.+|.+..........+....+...+.+ .+.+.
T Consensus 78 ~~---~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (251)
T PF13440_consen 78 AI---LIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL 148 (251)
T ss_pred HH---HHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence 11 111223 2332 223456667778888999999999999999999999999998888555555454 33588
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHH
Q 011863 230 IGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGN-LQNAKIA 308 (476)
Q Consensus 230 ~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 308 (476)
.+..++..++.++..+......+++ .+ . ++ +.+..| .++.+.|....+.........+..+++. +|.++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~---~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g 220 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK-LR--L---SF-KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVG 220 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cC--C---Cc-hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 8999999999887776665533322 11 1 11 112234 7999999999999999999999999998 6655444
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.05 E-value=2.5e-08 Score=98.98 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=170.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH------------------HHHHHhhcCCChhh
Q 011863 268 FSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW------------------VRVSNELGAGNGKG 329 (476)
Q Consensus 268 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~------------------~~~s~~~g~~~~~~ 329 (476)
..+.|++.+++.|.............+...+.+|+|+-+++....+.. +..++++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 567899999999999999999999999999999999987765443321 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHH
Q 011863 330 ARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYI 409 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~ 409 (476)
.-....++.........+.+..... .+++...+..|+++...+..+.++.....+-......+...+|+.++.....++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~-~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILN-SEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 9999999998888888888776654 489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863 410 NLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 459 (476)
Q Consensus 410 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
..+. .++++++.+++.+.+++|..|+..+.. +++.+.......+....
T Consensus 183 ~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~-~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 183 GLVA-LVLHILLTWLLVSKLGLGIKGAALALV-ASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHH-HHHHHHHHHHhhhcccCCCccchHHHH-HHHHHHHHHHHHHheec
Confidence 9999 999999999999999999999999999 99999888777666553
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.00 E-value=4.6e-06 Score=75.49 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-L-GD-LELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY 126 (476)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 126 (476)
.+..+.++-.|..+++.+..+...+-+.-++| - .+ +.+++|+++..+.-+ ...+...+-+....++ +++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~V-----~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVFV-----NSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHHh-----cchhh
Confidence 57889999999999999999999998888887 3 23 459999999999988 6667777766644444 44433
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-H-HhhHHHH-HHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 127 MLGVYMQRSWIVLFICCVLLLPL-Y-VFASPVL-KLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~i~-~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
+ ++.+......+.+..++..++ + .+...++ ..++.++++.+.+...+.++.+.-++.++.....|++-=.+++...
T Consensus 83 r-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 R-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 2 233333333333333332222 3 3444444 5678899999999999999999999999999999998877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHH--HhcCCCCccCCCChhhHHhHHHHHHH
Q 011863 204 AWVSLASLLVHLLVTWLFVYKMQL----GLIGTAITLSFSWWVLIFGMFGYV--ACGGCPRTWTGFSMEAFSDLWEFVKL 277 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~~~~----gi~g~a~a~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (476)
...++...+..+++..+++.. ++ +..--.++...+..+.+.+..... .-+..........+++...+++++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 777766666666655555531 12 111111222233322222222221 21122222223334444678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCcH
Q 011863 278 SVASGVMLCLENWYYRVLILMTGN-LQNA 305 (476)
Q Consensus 278 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~ 305 (476)
.+|.+.........-.+.+.++++ ++..
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999 5544
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.96 E-value=2.9e-06 Score=85.54 Aligned_cols=399 Identities=10% Similarity=-0.017 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHH
Q 011863 56 HIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVV-VAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQ 133 (476)
Q Consensus 56 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~-~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 133 (476)
+-+.-.++.|++..+.+++-+.++-| ++++.+|..++=..+. +-+.+..=-++-.+..+.-.....+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45566788899999999998888888 8999998874433333 222333445555554433222211112222222222
Q ss_pred HHHHHHHHHHHHHHHHHH----hhHH--HHHHc-CCChH---HHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHchh
Q 011863 134 RSWIVLFICCVLLLPLYV----FASP--VLKLL-GQPDD---VAELSGVVSLWLLPVHFSFAFQFPLQRF----LQSQLK 199 (476)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~----~~~~--i~~~~-~~~~~---~~~~a~~~l~i~~~~~~~~~~~~~~~~~----l~~~g~ 199 (476)
....+..+.+++...+.+ .... ...+. ...++ ..+.....+.+...+.....+.+.+... +.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 222222222221111110 0011 11111 11111 1223333344444455544444444333 333344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-cCCCc------chHHHHHHHHHHHHHHHHHHHHH--hcCC----CCccCCCCh-
Q 011863 200 TMVIAWVSLASLLVHLLVTWLFVYK-MQLGL------IGTAITLSFSWWVLIFGMFGYVA--CGGC----PRTWTGFSM- 265 (476)
Q Consensus 200 ~~~~~~~~i~~~~~~i~l~~~li~~-~~~gi------~g~a~a~~i~~~~~~~~~~~~~~--~~~~----~~~~~~~~~- 265 (476)
.+..........+.+..+....... .+++. .-+.++..++++...+....... .... ....++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 4444444444444444443333221 11111 12345555666544432222111 1111 011111111
Q ss_pred --hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCc-HHHHHHHHHHH--------------------HHHHH
Q 011863 266 --EAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGN--LQN-AKIAVDALSIW--------------------VRVSN 320 (476)
Q Consensus 266 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~-~~~a~~~~~i~--------------------~~~s~ 320 (476)
+....-+++.+........++.-.+..+-+.+++.. +.+ .+.+ .|++. ...++
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QG--vY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQG--VYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhh--HHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111124678888888888888888888888877777 433 2223 33332 44555
Q ss_pred hhcCCC---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHh
Q 011863 321 ELGAGN---------GKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQP 391 (476)
Q Consensus 321 ~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 391 (476)
...+++ .++..+.....++....+++++...-...++.+.+++.++.-....+...+++++...++.++++
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 554332 23455566666777777777666666666777777775544333446889999999999999999
Q ss_pred HHhhHhhccCcchhhHHHHHH--HHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 011863 392 VLSGVAVGSGWQSIVAYINLG--CYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 458 (476)
Q Consensus 392 ~~~~~l~a~g~~~~~~~~~~~--~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
+.....++..+.+.....+-. .+.++.+..++++... ++|..|..+|-+ +++.++.+....+.+|
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~-iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANC-INMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999887765553322 2244556677777744 799999999999 9999999977776655
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=0.00019 Score=68.22 Aligned_cols=396 Identities=13% Similarity=0.022 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc--
Q 011863 50 ESKKLWHIVGPTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY-- 126 (476)
Q Consensus 50 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~-- 126 (476)
....-.+-+...+..|++..+.++.-+.++-| ++++.+|..++-..+..- ...-++.=.........|..+.|
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s----TiLFlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS----TILFLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH----HHHHhhHHHHHHHhccCCCCCCccH
Confidence 34455666777788888888888887777666 899999998765555442 11222222223333333433333
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHH
Q 011863 127 -MLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDD-VAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (476)
Q Consensus 127 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (476)
+..+..+..-.+..+..++..-+++ .+... .++. ..+....-+.+...+...-.+...+.-..|..-+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl--~~~~s---~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWL--GFLSS---SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHH--HHhhc---cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333333333333333333322211 11111 1111 112222223444444444555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcC-CCcchHHHHHHHHHHHHHH-HHHHHHHhcCCCCc----------cCCCChh--hHH
Q 011863 205 WVSLASLLVHLLVTWL-FVYKMQ-LGLIGTAITLSFSWWVLIF-GMFGYVACGGCPRT----------WTGFSME--AFS 269 (476)
Q Consensus 205 ~~~i~~~~~~i~l~~~-li~~~~-~gi~g~a~a~~i~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~--~~~ 269 (476)
+..-+..++.....+. ++.+.+ .++..-|+|.....+...+ ..+.|++.++.+.. .++.... ..-
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 6666666666333333 332222 2444445555444433333 12223333321100 0110000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHH----HHHHHHH--------------HHHHHhhcCCChh
Q 011863 270 DLWEFVKLSVASGVMLCLENWYYRVLILMTGNL---QNAKIA----VDALSIW--------------VRVSNELGAGNGK 328 (476)
Q Consensus 270 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~a----~~~~~i~--------------~~~s~~~g~~~~~ 328 (476)
--++..+.............+...-+-.+++.. .-.+.+ +..+|-. ...++...+++.|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 112333444333334444444433333333321 101112 1222211 4455555555555
Q ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchh
Q 011863 329 GARFA---TIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSI 405 (476)
Q Consensus 329 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 405 (476)
+.++. .....+....+++..+..-...++.+..++.++.-....+...++++++..++.+++.+..+..+|.++.+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 55554 445566666666666666667778888888665433334678999999999999999999999999887766
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 011863 406 VAYINL--GCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITM 457 (476)
Q Consensus 406 ~~~~~~--~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~ 457 (476)
.-..+- ..+-+..+.+.+++. -.+|..|...|-+ +.+.++-+....+++
T Consensus 397 i~~~n~~mlafSviflilsylL~--~~~~~~GlIlANi-iNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLI--RWFGLVGLILANI-INMSLRILYSLRFIR 447 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHH--HHhchhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 544221 122445677888888 5589999999999 999888775544443
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.46 E-value=3.9e-05 Score=77.55 Aligned_cols=203 Identities=8% Similarity=0.015 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc--
Q 011863 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH--L-GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKY-- 125 (476)
Q Consensus 51 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 125 (476)
-++.++.....+..++...+.+--|.+++.. + +.++-|.|+++..+-++..=.+...+-.+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3678889999999999999999999999998 5 7889999999999999878888899999988888888765432
Q ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Q 011863 126 -------YMLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQ 197 (476)
Q Consensus 126 -------~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~ 197 (476)
++..+.+...+.+...++++++.+ ...++.++.+++++.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 335566677777777777666554 677777777765433223345778999999999999999999999998
Q ss_pred hhhhHHHHHHHHH---HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 198 LKTMVIAWVSLAS---LLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 198 g~~~~~~~~~i~~---~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
...+.....+-.. .++.+..++++..+ ++|..|..+|.++...+.......+.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777666555544 45666777888876 78999999999999999988888888765
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.42 E-value=2.2e-05 Score=65.53 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=73.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 011863 174 SLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVAC 253 (476)
Q Consensus 174 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~ 253 (476)
+++.+++.++..+.....+.+++.||++..++.++++.++|++++++++.. +|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999754 899999999999999998888888887
Q ss_pred c
Q 011863 254 G 254 (476)
Q Consensus 254 ~ 254 (476)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.19 E-value=1.1e-05 Score=67.43 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 011863 377 SILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIIT 456 (476)
Q Consensus 377 l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~ 456 (476)
+++++++.++.+.....+.++++.||+|..++.++++ .++++++.+++. |++|..|+.+|+. +++.+...+..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li--~~~G~~Gaa~a~~-i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILI--PRFGIYGAAIATA-ISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHH--HHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999 999999999997 8999999999999 99999999888888
Q ss_pred hcC
Q 011863 457 MRC 459 (476)
Q Consensus 457 ~~~ 459 (476)
+|.
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 875
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.0025 Score=60.85 Aligned_cols=201 Identities=9% Similarity=0.067 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccccH
Q 011863 52 KKLWHIVGPTIFSRMASYSMFVITQAFAG--H-LGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYML 128 (476)
Q Consensus 52 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~--~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 128 (476)
++..+.........++-.+.+=-|..++. . ++-++-|.|.++..+-++..-.+...+-...-...+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 45566666667777888888888888887 3 45567788888888888767778888888888888888877766665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHH
Q 011863 129 GVY---MQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA 204 (476)
Q Consensus 129 ~~~---~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 204 (476)
++. +...+.+...++++.+.+ ...++..+.+.++++=....+...+++.++.+|+.+++.+..+++.+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 554 455555555566444443 5666777777655433333455779999999999999999999999987766554
Q ss_pred H---HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 205 W---VSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 205 ~---~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
. ...+..+..++++++++.+ +|..|..+|.++...+..+..+.+.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445567778889999987 6779999999998777766665555544
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.65 E-value=0.054 Score=50.75 Aligned_cols=299 Identities=13% Similarity=0.110 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcCCccccHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCChHHHHHHHHHHHHHh
Q 011863 100 FNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLL-PLYVFASPVLKLLGQPDDVAELSGVVSLWLL 178 (476)
Q Consensus 100 ~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~ 178 (476)
+.+.+..|+....++.+|...=+||++++...+.-...+....+..+. +++. ..++.. ..|=...+
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~s-----i~yk~l~~ 138 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQYS-----IVYKILAC 138 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCchh-----HHHHHHHH
Confidence 466688889999999999988888887776665444433333332222 1111 112211 11222334
Q ss_pred hhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q 011863 179 PVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACG-GCP 257 (476)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~a~a~~i~~~~~~~~~~~~~~~~-~~~ 257 (476)
..........+...++.+++|.+.....-.++..+.+.+..++-. .+..|..++..++..+.......+..|. +.+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 445566667778889999999999999888888888888776664 4899999999999988887777777765 222
Q ss_pred CccCCCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH-H----------H---HHHH-HH-------
Q 011863 258 RTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKI-A----------V---DALS-IW------- 315 (476)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-a----------~---~~~~-i~------- 315 (476)
++ ..++.. ...+--....+.....++..++++++.=..++.+. + + .|+- ..
T Consensus 216 ~~-i~FdFL------~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 RR-IGFDFL------LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred cc-cceehh------hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 21 122211 11111122233444566666666654333321111 0 1 1111 11
Q ss_pred ----HHHHHhh--------cC-------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHH
Q 011863 316 ----VRVSNEL--------GA-------GNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKM 376 (476)
Q Consensus 316 ----~~~s~~~--------g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 376 (476)
+...+.+ +. ++.++.....+....-..-+-...++.++++++.+...+.-++. ..+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHH
Confidence 1111111 11 23444444555555566666778888899999999998876553 4555
Q ss_pred HHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 011863 377 SILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLG 426 (476)
Q Consensus 377 l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~ 426 (476)
+.+-.++.-+......+-++..=..+-+.++..+..- .+.|..+.++..
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 5666666555555555555544455666666655444 556666666654
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.20 E-value=0.06 Score=49.03 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=76.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcc
Q 011863 324 AGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQ 403 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 403 (476)
++|+++.++..+.......+...+. ..+...+...+ ++++ ....+.+..+..++..........+++.+|.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (251)
T PF13440_consen 50 ARDKQDIRSLLRFSLLVSLLLAVIL----AILAILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRF 120 (251)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 3555566666555554444433333 33333333344 3333 3345566777788888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 011863 404 SIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITM 457 (476)
Q Consensus 404 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~ 457 (476)
+.......+.. +..+.....+.. .+.+..+..++.. ++.++..+......+
T Consensus 121 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 121 RAYALIDIVRS-LLRLLLLVLLLY-LGLNLWSILLAFI-ISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHH-HHhhHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 99999988884 333333333332 3338888888988 888887765555443
No 44
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.15 E-value=0.056 Score=49.82 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=52.0
Q ss_pred HHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 011863 385 LLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR 458 (476)
Q Consensus 385 ~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~ 458 (476)
++..........+++.++.+.....+... .+..+.+.+++.. ...+..+..++.. ++..+..++..+..+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 120 ILSSLSSVFSGLLQGLQRFKYIAISNIIS-SLLSLLLILLLLF-LGSSLWGFLLGLV-ISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 57778888999999999999998888887 4444444444442 2334888888888 8888887777666664
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.97 E-value=0.29 Score=45.22 Aligned_cols=143 Identities=8% Similarity=0.142 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHH--------------HHHHHhhcCCChhhHHHH
Q 011863 269 SDLWEFVKLSVASGVMLCLENWYYRVLILMTGNL-QNAKIAVDALSIW--------------VRVSNELGAGNGKGARFA 333 (476)
Q Consensus 269 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~i~--------------~~~s~~~g~~~~~~~~~~ 333 (476)
.+.+++.+..+|.++++.+..+.-.+.|.-+++- .+.....++||+. -.++-.+++++++ ++.
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~rs--rr~ 85 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSKRS--RRK 85 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcchhh--hHH
Confidence 4667999999999999999999999988888764 3333446677665 2344445544333 333
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHhhHH-hhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHH
Q 011863 334 TIVSVVTSIAIGVFF--FILILIFHNE-LALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYIN 410 (476)
Q Consensus 334 ~~~~~~~~~~~~~~~--~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 410 (476)
...++.....+...+ .+..--+.++ +..++.-|+++.+.+...+.++.+.-+++++....++++.=.+++......+
T Consensus 86 ~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aS 165 (345)
T PF07260_consen 86 AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSAS 165 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHH
Confidence 333332222222111 1111122222 4445567899999999999999999999999999999888566666666666
Q ss_pred HHH
Q 011863 411 LGC 413 (476)
Q Consensus 411 ~~~ 413 (476)
+..
T Consensus 166 I~~ 168 (345)
T PF07260_consen 166 IAD 168 (345)
T ss_pred HHH
Confidence 665
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=89.83 E-value=21 Score=34.98 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=32.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 011863 325 GNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALI 362 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 362 (476)
.++++.+++.+++.+.++.......+++....-|+...
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999998888888887763
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=78.66 E-value=65 Score=31.05 Aligned_cols=95 Identities=8% Similarity=0.006 Sum_probs=62.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 125 YYMLGVYMQRSWIVLFICCVLLLP-LYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
.++.....++.+.-.+-+.....+ +...++.+..+++-++ ...+.+++-.++...+......-...-=.++-+..
T Consensus 319 ~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~ 394 (467)
T COG4267 319 LKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIA 394 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455555555555555544444 4788888888887654 33445666666666665555555555556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011863 204 AWVSLASLLVHLLVTWLFVY 223 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~ 223 (476)
+.....-.+.|.+++++...
T Consensus 395 l~~t~~fli~N~ilT~i~l~ 414 (467)
T COG4267 395 LELTALFLISNGILTFIFLE 414 (467)
T ss_pred hhhhhHHHHHhHHHHHHHHH
Confidence 77777778899999988776
No 48
>COG5393 Predicted membrane protein [Function unknown]
Probab=72.59 E-value=17 Score=28.08 Aligned_cols=55 Identities=5% Similarity=-0.110 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 011863 419 VPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRN 474 (476)
Q Consensus 419 i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (476)
+.+..+..+.+.|-.......++ .-+++..+.+.|.+++..-......-++|+++
T Consensus 68 L~vLvi~~f~~tyRl~a~~a~~~-vl~vl~~i~ciW~lrks~~s~l~~aT~~ELan 122 (131)
T COG5393 68 LMVLVIWAFDPTYRLNAMIATTA-VLLVLALIGCIWTLRKSRKSTLLRATRHELAN 122 (131)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhh
Confidence 33333344446666667777788 88888888888888887544444444444443
No 49
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=54.50 E-value=1.1e+02 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHhcCChHHHHHHHHHHh
Q 011863 452 LAIITMRCDWDREAEKAATAL 472 (476)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~ 472 (476)
..|......+|++.+|.+|++
T Consensus 116 iIw~~~y~~~k~~i~kiN~kL 136 (136)
T PF11457_consen 116 IIWLIFYLYWKKDIKKINEKL 136 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 444455556777777777653
No 50
>PTZ00370 STEVOR; Provisional
Probab=47.74 E-value=28 Score=31.84 Aligned_cols=35 Identities=34% Similarity=0.309 Sum_probs=18.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhc-C--ChHHHHHH
Q 011863 432 GVMGIWAGMIFGGTAVQTLILAIITMR-C--DWDREAEK 467 (476)
Q Consensus 432 g~~g~~~a~~~i~~~~~~~~~~~~~~~-~--~~~~~~~~ 467 (476)
+..|++.-.. +-..+..++++++++| | .||++.++
T Consensus 255 ~Pygiaalvl-lil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVL-LILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 4455554444 4444444444444444 3 79987654
No 51
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=41.33 E-value=2.1e+02 Score=23.81 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=16.3
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011863 48 WIESK-KLWHIVGPTIFSRMASYSMFVI 74 (476)
Q Consensus 48 ~~~~~-~~~~~~~p~~~~~~~~~~~~~i 74 (476)
.+..| -.+..++|++++.....+...+
T Consensus 59 ~RM~rRm~~~~GiP~~lG~~~f~~~y~l 86 (153)
T PF11947_consen 59 NRMLRRMAVFVGIPTALGVAVFVVFYYL 86 (153)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 33444 4477788888877665555443
No 52
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=38.85 E-value=86 Score=19.87 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHH
Q 011863 436 IWAGMIFGGTAVQTLILAIITMR-CDWDREAEKA 468 (476)
Q Consensus 436 ~~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 468 (476)
+|.++. ++.++...+......+ ++.++..++.
T Consensus 7 VW~sYg-~t~~~l~~l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 7 VWSSYG-VTALVLAGLIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 5544444433333332 2444444443
No 53
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=37.76 E-value=85 Score=22.88 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=26.7
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 011863 316 VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFI 350 (476)
Q Consensus 316 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (476)
..+.+.+.++|++++++..++..+++.+-.....+
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~ 76 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGIV 76 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55777888899999999999988887655444333
No 54
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=37.55 E-value=1.7e+02 Score=21.68 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cChhHHHHHHHHHHHHH
Q 011863 60 PTIFSRMASYSMFVITQAFAGH--LGDLELAAISIANTVVV 98 (476)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~--lg~~~~~~~~~~~~~~~ 98 (476)
|.++..++..+.-++-.++-+. ..-.++|..+++..+-.
T Consensus 35 p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~ 75 (87)
T PF06781_consen 35 PLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGL 75 (87)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHH
Confidence 4555555555555555554444 35567777666554443
No 55
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=36.12 E-value=3.9e+02 Score=26.98 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHH--H
Q 011863 338 VVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCY--Y 415 (476)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~--~ 415 (476)
.+..+..+..++.+.-++-+..++.=.. .-...+.++-++.+..+-+...+.....--.++.+.......... .
T Consensus 102 ~r~v~~~~~~~sa~~t~l~P~aa~~~~~----~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~ 177 (466)
T KOG2532|consen 102 ARRVFFISGLISALLTLLTPLAASIGFY----LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGT 177 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcch----hhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433211 224667777777788888888888888887788888777665442 3
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 011863 416 LIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITM 457 (476)
Q Consensus 416 ~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~ 457 (476)
+++.|+.-.+... .+|=..+..... ...++-.++-.+.++
T Consensus 178 v~~mp~sg~lc~s-~~GW~sifY~~g-~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 178 IITMPVSGLLCES-SLGWPSIFYVFG-IVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHhHHHHhcc-CCCCchHHHHHH-HHHHHHHHHHHHHhc
Confidence 4556656555522 378778877777 555555544433333
No 56
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.95 E-value=1.2e+02 Score=28.75 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHh-------hcCC-cchhhHHHHHHHHHHHHHHHHHHHhcCCh
Q 011863 417 IGVPLGILLGWV-------FHQG-VMGIWAGMIFGGTAVQTLILAIITMRCDW 461 (476)
Q Consensus 417 ~~i~~~~~l~~~-------~~~g-~~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
+.+|+.++.+.+ |..+ .+|-|+... ..++.++..+++++|++|
T Consensus 273 IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~--im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 273 VFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCL--LLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHhhhccccCCCCCcCCcchHHHHHH--HHHHHHHHHHHHHHhccc
Confidence 456777775543 1111 134443333 334444556677777777
No 57
>PF14184 YrvL: Regulatory protein YrvL
Probab=33.78 E-value=2.6e+02 Score=22.64 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCC-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHH
Q 011863 134 RSWIVLFICCVLLLPLYVFASPVLKLLGQP-DDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLL 212 (476)
Q Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~ 212 (476)
....+.+...++.+...+....+++++|-+ +.......-.+.....+.|+..+.......+.-.+-++.. .......
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHHH
Confidence 334444444444444455566677777654 3444444555556666777777777666655555333332 2355577
Q ss_pred HHHHHHHHHHHhcCCCcchHHH
Q 011863 213 VHLLVTWLFVYKMQLGLIGTAI 234 (476)
Q Consensus 213 ~~i~l~~~li~~~~~gi~g~a~ 234 (476)
+...+++..++..+.=+.++.+
T Consensus 84 id~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceee
Confidence 7888888888754432333333
No 58
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=31.82 E-value=1.6e+02 Score=27.88 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCh
Q 011863 445 TAVQTLILAIITMRCDW 461 (476)
Q Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (476)
.++.++..+++++|++|
T Consensus 301 m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 301 MAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33444556777888787
No 59
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=30.65 E-value=2.2e+02 Score=21.02 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHH
Q 011863 60 PTIFSRMASYSMFVITQAFAGH-LGDLELAAISIANTVV 97 (476)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~~~ 97 (476)
|.++...+..+..++-..+.+. +.-.++|..+++..+-
T Consensus 36 ~~m~~lm~~Gl~WlvvyYl~~~~~P~~~lG~WN~~IGfg 74 (87)
T PRK02251 36 PLFVALMIIGLIWLVVYYLSNGSLPIPALGAWNLVIGFG 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCcCcccccchhHHHHHH
Confidence 4445555555555555554444 6655677766554433
No 60
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.21 E-value=51 Score=30.22 Aligned_cols=32 Identities=31% Similarity=0.263 Sum_probs=16.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhc-C--ChHHH
Q 011863 432 GVMGIWAGMIFGGTAVQTLILAIITMR-C--DWDRE 464 (476)
Q Consensus 432 g~~g~~~a~~~i~~~~~~~~~~~~~~~-~--~~~~~ 464 (476)
...|++.-.. +-..+..++++++++| | .||++
T Consensus 259 ~Pcgiaalvl-lil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 259 LPYGIAALVL-IILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred cccHHHHHHH-HHHHHHHHHHHHHHHHhhccccccc
Confidence 4445554444 4444444444444444 3 68875
No 61
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.48 E-value=2.8e+02 Score=24.62 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=18.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 011863 124 KYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161 (476)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 161 (476)
+++.....+..++...+.+-++.++++.+..++..+++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 33444444444444333333334444555566666655
No 62
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.31 E-value=1.7e+02 Score=27.78 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHh-hcCC-------cchhhHHHHHHHHHHHHHHHHHHHhcCCh
Q 011863 417 IGVPLGILLGWV-FHQG-------VMGIWAGMIFGGTAVQTLILAIITMRCDW 461 (476)
Q Consensus 417 ~~i~~~~~l~~~-~~~g-------~~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
+.+|..++.+.+ -+++ .+|.|++.. +. ++.+++.+++++|++|
T Consensus 271 iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~-~m-~~~~~~~~~~frrk~W 321 (322)
T COG0598 271 IFLPPTLITGFYGMNFKGMPELDWPYGYPIALI-LM-LLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHhhHHHHcccccCCCCCcCCCCcccHHHHHH-HH-HHHHHHHHHHHHhcCc
Confidence 446666666543 1111 235565555 44 4445557777888777
No 63
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.21 E-value=1.8e+02 Score=18.36 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 011863 436 IWAGMIFGGTAVQTLIL 452 (476)
Q Consensus 436 ~~~a~~~i~~~~~~~~~ 452 (476)
+|.++. ++.++...+.
T Consensus 8 VW~sYg-~t~l~l~~li 23 (45)
T TIGR03141 8 VWLAYG-ITALVLAGLI 23 (45)
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 455555 5544444333
No 64
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=25.86 E-value=2.4e+02 Score=27.81 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011863 46 RFWIESKKLWHIVGPTIFSRMASYSMFV 73 (476)
Q Consensus 46 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 73 (476)
+..+..|.++.+..|..+.-+.+.+.+.
T Consensus 237 ~k~~~~k~Ll~ymiPL~lVY~aEY~Inq 264 (402)
T PF02487_consen 237 EKLKRLKPLLWYMIPLFLVYFAEYFINQ 264 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888899999988888876643
No 65
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=25.29 E-value=3.5e+02 Score=25.37 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=26.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011863 316 VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILI 352 (476)
Q Consensus 316 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (476)
...+.+.-++..| .++..+++.+++++.++......
T Consensus 48 il~Gy~I~rG~vd-~~efi~R~ikiaIIvalAl~ag~ 83 (295)
T PRK13852 48 IVQGILVMRGELD-ARGGITRVITVSIVVALIVGQAN 83 (295)
T ss_pred HHHHHHHHhCCch-hHHHHHHHHHHHHHHHHHHhHHH
Confidence 5566665555544 56888899999999988887754
No 66
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=23.43 E-value=2.9e+02 Score=26.24 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHh-hcCC-c------chhhHHHHHHHHHHHHHHHHHHHhcCCh
Q 011863 402 WQSIVAYINLGCYYLIGVPLGILLGWV-FHQG-V------MGIWAGMIFGGTAVQTLILAIITMRCDW 461 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g-~------~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
++...+++-.+. .++.+|..++.+.+ -+++ . +|.+++.. ..++.+.+.+++++|++|
T Consensus 251 ~~N~~mk~lTv~-s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~--~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 251 EQNRIIKIFSVV-SVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAII--LMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHH--HHHHHHHHHHHHHHHccc
Confidence 333344433333 33456666665542 1111 1 23333333 233334446667777777
No 67
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=22.74 E-value=6.9e+02 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=26.2
Q ss_pred cCCCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011863 260 WTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQ 303 (476)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 303 (476)
.+..++..+...++.++.++|..+ ..+.+++...-.+++.
T Consensus 78 ~~~l~~~i~~~~~~~lk~~vPa~i----YalqNnl~yval~~ld 117 (345)
T KOG2234|consen 78 LKSLSKEILAAPRETLKVSVPALI----YALQNNLQYVALSNLD 117 (345)
T ss_pred hhhcCHHHHhChHHHHHHHHHHHH----HHHhhhHHHHHHhcCC
Confidence 345566667788899999999876 3444444444455554
No 68
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=22.01 E-value=3.4e+02 Score=20.12 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-cC-hhHHHHHHHHHHHHH
Q 011863 60 PTIFSRMASYSMFVITQAFAGH-LG-DLELAAISIANTVVV 98 (476)
Q Consensus 60 p~~~~~~~~~~~~~i~~~~i~~-lg-~~~~~~~~~~~~~~~ 98 (476)
|.+++.++..+..++-..+.+. +. -.++|..+++..+-.
T Consensus 35 ~~m~glm~~GllWlvvyYl~~~~~P~m~~lG~WN~~IGFg~ 75 (87)
T PRK00159 35 VLMLGLMLIGLAWLVVNYLAGPAIPWMADLGPWNYAIGFAL 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccCchhHHHHHHH
Confidence 4445555555555555555444 53 467777766544433
No 69
>PRK01637 hypothetical protein; Reviewed
Probab=21.98 E-value=6.4e+02 Score=23.37 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=3.4
Q ss_pred HHHhhcCC
Q 011863 318 VSNELGAG 325 (476)
Q Consensus 318 ~s~~~g~~ 325 (476)
..+.++.+
T Consensus 116 ~N~i~~~~ 123 (286)
T PRK01637 116 LNTIWRSK 123 (286)
T ss_pred HHHHhCCC
Confidence 34444433
No 70
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.89 E-value=5.4e+02 Score=22.48 Aligned_cols=7 Identities=29% Similarity=0.396 Sum_probs=3.4
Q ss_pred hhhhcCC
Q 011863 359 LALIFSS 365 (476)
Q Consensus 359 i~~l~~~ 365 (476)
+..+|.+
T Consensus 99 i~~~f~~ 105 (206)
T PF06570_consen 99 IMGFFSP 105 (206)
T ss_pred HHHHHhh
Confidence 4445544
No 71
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.33 E-value=7e+02 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 231 GTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 231 g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
|.+++..+.- +.+++..++++|+
T Consensus 297 Gy~~~l~~m~-~~~~~~~~~frrk 319 (322)
T COG0598 297 GYPIALILML-LLALLLYLYFRRK 319 (322)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHhc
Confidence 5566666653 4445555566654
Done!