Query 011863
Match_columns 476
No_of_seqs 225 out of 2078
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.3E-45 4.5E-50 370.1 31.6 414 44-459 4-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 4.6E-20 1.6E-24 184.3 20.6 206 48-254 234-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 87.7 19 0.00066 34.1 35.0 21 429-450 408-428 (451)
4 4aps_A DI-OR tripeptide H+ sym 41.8 2.3E+02 0.0079 26.8 32.2 53 395-449 413-465 (491)
5 4ev6_A Magnesium transport pro 40.1 51 0.0018 30.2 6.4 44 416-461 287-338 (339)
6 4hkr_A Calcium release-activat 31.6 2.3E+02 0.0077 23.6 13.3 80 83-163 56-143 (214)
7 2k1k_A Ephrin type-A receptor 28.0 61 0.0021 18.8 3.0 18 229-246 13-30 (38)
8 2ks1_B Epidermal growth factor 19.2 1.6E+02 0.0056 17.7 4.6 10 245-254 29-38 (44)
9 2jwa_A Receptor tyrosine-prote 18.0 1.7E+02 0.006 17.6 3.6 11 244-254 28-38 (44)
10 2iub_A CORA, divalent cation t 17.4 75 0.0026 29.4 3.0 58 402-461 298-362 (363)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.3e-45 Score=370.05 Aligned_cols=414 Identities=19% Similarity=0.363 Sum_probs=373.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 011863 44 TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK 123 (476)
Q Consensus 44 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 123 (476)
++..++..|++++.+.|.+++++...+.+.+|+.+++|+|++++|+++++.++..+ ...+..|++++..+.+++++|++
T Consensus 4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~ 82 (460)
T 3mkt_A 4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG 82 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556789999999999999999999999999999999999999999999999887 77788999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863 124 KYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI 203 (476)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 203 (476)
|+++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|+++.+++.++..+.....+++++.||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999887767788888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-c---CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCc---cCCCChhhHHhHHHHHH
Q 011863 204 AWVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRT---WTGFSMEAFSDLWEFVK 276 (476)
Q Consensus 204 ~~~~i~~~~~~i~l~~~li~~-~---~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 276 (476)
++.++++.++|+++++++++. + ++|+.|+++|+.+++++..++..++.++++...+ +.++.+.+++.+|++++
T Consensus 163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence 999999999999999999975 3 6899999999999999999988888877632221 12233445578889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHH
Q 011863 277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVV 339 (476)
Q Consensus 277 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~ 339 (476)
+++|.+++.....+.+.+++.+++++|+.+++....+.. |.+++++|++|+++.++..+++.+
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998776553322111 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHH
Q 011863 340 TSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGV 419 (476)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i 419 (476)
+.+.++++.++++.++++++.++|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999789999
Q ss_pred HHHHHHHHh----hc-CCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863 420 PLGILLGWV----FH-QGVMGIWAGMIFGGTAVQTLILAIITMRC 459 (476)
Q Consensus 420 ~~~~~l~~~----~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~~ 459 (476)
|+.+++... ++ +|..|+|+++. +++.+..++..++++|.
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999955 45 99999999999 99999988777666654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=4.6e-20 Score=184.31 Aligned_cols=206 Identities=14% Similarity=0.097 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcccc
Q 011863 48 WIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYM 127 (476)
Q Consensus 48 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 127 (476)
++..|++++.+.|.+++++...+...+|+.+++++|++++|+|+++.++.++ ...+..+++++..|.+++++|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3456889999999999999999999999999999999999999999999999 778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHHH
Q 011863 128 LGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWV 206 (476)
Q Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 206 (476)
+++..+.+..+...++++.+++ +.+++++..++..+++..+.+..++++.+++.++..++.+..+.+++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999988776 889999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 011863 207 SLASL-LVHLLVTWLFVYK----MQ-LGLIGTAITLSFSWWVLIFGMFGYVACG 254 (476)
Q Consensus 207 ~i~~~-~~~i~l~~~li~~----~~-~gi~g~a~a~~i~~~~~~~~~~~~~~~~ 254 (476)
++++. ++++++++++... ++ +|+.|+++|+.+++++..++..++++|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 9999999999986 66 8999999999999998887776655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=87.67 E-value=19 Score=34.08 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=11.0
Q ss_pred hcCCcchhhHHHHHHHHHHHHH
Q 011863 429 FHQGVMGIWAGMIFGGTAVQTL 450 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~ 450 (476)
...|....++... +..++..+
T Consensus 408 ~~~g~~~~~~~~~-~~~~~~~~ 428 (451)
T 1pw4_A 408 DFFGWDGGFMVMI-GGSILAVI 428 (451)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHH
T ss_pred HhcCcHHHHHHHH-HHHHHHHH
Confidence 4457666655555 44444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=41.83 E-value=2.3e+02 Score=26.76 Aligned_cols=53 Identities=9% Similarity=-0.064 Sum_probs=22.4
Q ss_pred hHhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHH
Q 011863 395 GVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQT 449 (476)
Q Consensus 395 ~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~ 449 (476)
.......+.......+... .+.......+.....+.+....+.... ....+..
T Consensus 413 ~~~p~~~~g~~~g~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 465 (491)
T 4aps_A 413 KLAPKAFNSQMMSMWFLSS-SVGSALNAQLVTLYNAKSEVAYFSYFG-LGSVVLG 465 (491)
T ss_dssp HHTTTTCSSSSTHHHHHHH-HHHHHHHHHHGGGGGGSSTTHHHHHTH-HHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHHHH
Confidence 3333333444444444444 333333333344334445544554444 4333333
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=40.09 E-value=51 Score=30.22 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHh-------hcCC-cchhhHHHHHHHHHHHHHHHHHHHhcCCh
Q 011863 416 LIGVPLGILLGWV-------FHQG-VMGIWAGMIFGGTAVQTLILAIITMRCDW 461 (476)
Q Consensus 416 ~~~i~~~~~l~~~-------~~~g-~~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
++.+|+.++.+.+ |..+ .+|-|+... + .++.+++.+++++|++|
T Consensus 287 ~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~-~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 287 TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMA-L-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHH-H-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHH-H-HHHHHHHHHHHHHHcCC
Confidence 3557777776653 1111 234454444 3 44455566777888888
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=31.57 E-value=2.3e+02 Score=23.62 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc--------CCccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 011863 83 GDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFG--------GKKYYMLGVYMQRSWIVLFICCVLLLPLYVFAS 154 (476)
Q Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (476)
++.-+.+|+....+.-. ...+..-+++.+.|.+-..-+ +...++.+.++-.+..++..+++++.+.-+..-
T Consensus 56 p~~LLi~fav~Ttllv~-vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVA-VHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHH-HHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457888888888887 677778788877666655432 234566777777777788777777666533333
Q ss_pred HHHHHcCCC
Q 011863 155 PVLKLLGQP 163 (476)
Q Consensus 155 ~i~~~~~~~ 163 (476)
-+++++..+
T Consensus 135 ~WVKF~~~~ 143 (214)
T 4hkr_A 135 CWVKFYDLS 143 (214)
T ss_dssp HHHHHTTTC
T ss_pred heEEeecCC
Confidence 455665444
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.03 E-value=61 Score=18.85 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=7.9
Q ss_pred cchHHHHHHHHHHHHHHH
Q 011863 229 LIGTAITLSFSWWVLIFG 246 (476)
Q Consensus 229 i~g~a~a~~i~~~~~~~~ 246 (476)
+.|+.++.+++-.+...+
T Consensus 13 IAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHH
Confidence 344555555444333333
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.15 E-value=1.6e+02 Score=17.68 Aligned_cols=10 Identities=10% Similarity=0.148 Sum_probs=4.2
Q ss_pred HHHHHHHHhc
Q 011863 245 FGMFGYVACG 254 (476)
Q Consensus 245 ~~~~~~~~~~ 254 (476)
+..+++++|+
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.98 E-value=1.7e+02 Score=17.57 Aligned_cols=11 Identities=0% Similarity=-0.490 Sum_probs=5.3
Q ss_pred HHHHHHHHHhc
Q 011863 244 IFGMFGYVACG 254 (476)
Q Consensus 244 ~~~~~~~~~~~ 254 (476)
.+....|++|+
T Consensus 28 ~l~~~~~~RRR 38 (44)
T 2jwa_A 28 GVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhheehh
Confidence 34444455554
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=17.38 E-value=75 Score=29.42 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHh-------hcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCh
Q 011863 402 WQSIVAYINLGCYYLIGVPLGILLGWV-------FHQGVMGIWAGMIFGGTAVQTLILAIITMRCDW 461 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~ 461 (476)
+....++.-.+. .++.+|+.++.+.+ |...-.-.++... ...++.++..+++++|++|
T Consensus 298 ~~N~imk~LTii-t~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l-~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 298 KTNEVMKVLTII-ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVL-AVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTTSCC--------------CHHHH-HHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHH-HHHHHHHHHHHHHHHHccc
Done!