Query 011863
Match_columns 476
No_of_seqs 225 out of 2078
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 16:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 55.9 60 0.0044 27.9 20.0 27 226-252 406-432 (447)
2 d2iuba2 f.17.3.1 (A:286-349) M 10.4 1.1E+02 0.0079 18.3 3.0 10 417-426 15-24 (64)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 8.4 5E+02 0.036 21.2 39.4 23 429-452 405-427 (447)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 7.1 5.1E+02 0.037 22.1 7.5 60 415-476 384-444 (444)
5 d1nkzb_ f.3.1.1 (B:) Light-har 4.5 3E+02 0.022 14.6 4.1 33 326-358 7-39 (41)
6 d1pv7a_ f.38.1.2 (A:) Lactose 3.5 8.9E+02 0.065 18.7 34.9 45 51-95 6-53 (417)
7 d1m56d_ f.23.8.1 (D:) Bacteria 3.3 4.1E+02 0.03 14.3 4.0 22 323-344 5-26 (42)
8 d1ppjd2 f.23.11.1 (D:196-241) 2.4 5.6E+02 0.041 14.0 2.3 14 451-464 22-35 (46)
9 d2oara1 f.16.1.1 (A:10-118) Ga 2.2 8.8E+02 0.064 15.9 4.2 15 435-450 61-75 (109)
10 d1ijdb_ f.3.1.1 (B:) Light-har 2.2 5.6E+02 0.041 13.4 3.9 30 326-355 8-37 (40)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=55.90 E-value=60 Score=27.90 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=13.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011863 226 QLGLIGTAITLSFSWWVLIFGMFGYVA 252 (476)
Q Consensus 226 ~~gi~g~a~a~~i~~~~~~~~~~~~~~ 252 (476)
+.|..+..+......++..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655555554555444444433
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.38 E-value=1.1e+02 Score=18.33 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 011863 417 IGVPLGILLG 426 (476)
Q Consensus 417 ~~i~~~~~l~ 426 (476)
+.+|+.++.+
T Consensus 15 iflP~t~i~g 24 (64)
T d2iuba2 15 IFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 3355555443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.44 E-value=5e+02 Score=21.22 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=12.6
Q ss_pred hcCCcchhhHHHHHHHHHHHHHHH
Q 011863 429 FHQGVMGIWAGMIFGGTAVQTLIL 452 (476)
Q Consensus 429 ~~~g~~g~~~a~~~i~~~~~~~~~ 452 (476)
..+|..+.++... ...++..++.
T Consensus 405 ~~~g~~~~~~~~~-~~~~~~~~~~ 427 (447)
T d1pw4a_ 405 DFFGWDGGFMVMI-GGSILAVILL 427 (447)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHH
T ss_pred HHhChHHHHHHHH-HHHHHHHHHH
Confidence 4567666665555 5444444433
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=7.06 E-value=5.1e+02 Score=22.08 Aligned_cols=60 Identities=13% Similarity=-0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhccC
Q 011863 415 YLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMR-CDWDREAEKAATALRNIK 476 (476)
Q Consensus 415 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 476 (476)
...+.|+...+...--.|-........ ++..+...+. ..+.+ .-|....++..++.|+||
T Consensus 384 ~~~~~Plta~vl~~Eltg~~~~~~p~~-ia~~~a~~v~-~~~~~~siY~~~l~~~~~~~~~~~ 444 (444)
T d1otsa_ 384 ASIRAPLTGIILVLEMTDNYQLILPMI-ITGLGATLLA-QFTGGKPLYSAILARTLAKQEAEQ 444 (444)
T ss_dssp HTSCCHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHH-HHhCCCChHHHHHHHHHHhhhccC
Confidence 345567666655443345445555555 5444444432 22332 357777777777777765
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.55 E-value=3e+02 Score=14.64 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=23.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 011863 326 NGKGARFATIVSVVTSIAIGVFFFILILIFHNE 358 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (476)
+-++..+....+.++...+.++.=++-+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 356777888888888888877766665555544
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.53 E-value=8.9e+02 Score=18.71 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c--ChhHHHHHHHHHH
Q 011863 51 SKKLWHIVGPTIFSRMASYSMFVITQAFAGH-L--GDLELAAISIANT 95 (476)
Q Consensus 51 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l--g~~~~~~~~~~~~ 95 (476)
.|+++.++.-.++..+...........++.+ + ++.+.|...-...
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~ 53 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAIS 53 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 3567777777777666665554444444443 4 4555555443333
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.28 E-value=4.1e+02 Score=14.28 Aligned_cols=22 Identities=9% Similarity=-0.236 Sum_probs=9.4
Q ss_pred cCCChhhHHHHHHHHHHHHHHH
Q 011863 323 GAGNGKGARFATIVSVVTSIAI 344 (476)
Q Consensus 323 g~~~~~~~~~~~~~~~~~~~~~ 344 (476)
|+-|.+.-.+.+.--+++..-.
T Consensus 5 G~MDi~vQEKTF~gFik~~t~~ 26 (42)
T d1m56d_ 5 GSMDITQQEKTFAGFVRMVTWA 26 (42)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.39 E-value=5.6e+02 Score=14.00 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=7.5
Q ss_pred HHHHHHhcCChHHH
Q 011863 451 ILAIITMRCDWDRE 464 (476)
Q Consensus 451 ~~~~~~~~~~~~~~ 464 (476)
.+.++.+|..|...
T Consensus 22 ~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 22 PLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhc
Confidence 34455556566543
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.25 E-value=8.8e+02 Score=15.89 Aligned_cols=15 Identities=0% Similarity=-0.122 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 011863 435 GIWAGMIFGGTAVQTL 450 (476)
Q Consensus 435 g~~~a~~~i~~~~~~~ 450 (476)
|.++... +..++.++
T Consensus 61 G~fi~a~-InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAA-INFFLIAF 75 (109)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 4444444 44444443
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.19 E-value=5.6e+02 Score=13.41 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=20.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011863 326 NGKGARFATIVSVVTSIAIGVFFFILILIF 355 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (476)
+-++..+....+.++...+.++.=++-+..
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~ 37 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Confidence 356777788888888777776665544433
Done!