BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011864
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/416 (58%), Positives = 309/416 (74%), Gaps = 30/416 (7%)
Query: 84 PSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN 143
PSS SG++ EF+ ++L EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN
Sbjct: 112 PSS-ISGDQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN 170
Query: 144 ECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKI 203
ECPACR HCASRRSLRDDP +DALI+AL+ +ID YEEEELAFHE+E RNKQIQASIA+I
Sbjct: 171 ECPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQI 230
Query: 204 FQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQ--GSEDNEDENDD 261
QRQSEALVKRR+ GK+ A R+PR A RRR + Q SE +ED+++D
Sbjct: 231 SQRQSEALVKRRSLGKEAAVLM-----RSPRIASGSRRRRNSRNMEQQNASEAHEDDDND 285
Query: 262 NG---GKDS-SSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRES 315
+ G+D SS+DER EVR ++R++RS RS+Q PSSS AN ++G C +ND EV R++
Sbjct: 286 DNNNRGRDKDSSSDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDT 345
Query: 316 RGISPGLVWNPEMLAWGRGGTRSNTRHG-SASGCNSKSSRSTRLNKLVEYLR-SLQENND 373
+GISPGLVWNPE+LAWGRGGTRSNTRHG + SG +SKS R+ R+NKLVEYLR S+ ++
Sbjct: 346 KGISPGLVWNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSV 405
Query: 374 ELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQL-----CETPLQAEEVEILMVKERLD 428
ELD+ + LVS DT+C P L QPYLCC+P+L VKQL + L+ EEVE+L+ + R+
Sbjct: 406 ELDIHVKLVSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRRRVG 465
Query: 429 ---AKGNQSTPIPTT-----DQLQILEGQETLAGLRVNHTSNTD-HLILAYRQKQS 475
A N P + D++ LE ETL+ L+++ S+ + HLI+AYR+KQ+
Sbjct: 466 EDAAIENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQT 521
>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana
GN=RING1B PE=1 SV=1
Length = 460
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 225/442 (50%), Positives = 296/442 (66%), Gaps = 41/442 (9%)
Query: 57 EEDQKDDEEVEGEGDEEDEENED---------------DSEGPSSDTSGE--KPEFVFVE 99
EED +E + GDEED+ D E S ++GE + E++ V+
Sbjct: 34 EEDPDKMDEKDESGDEEDDVKRDQVEAEDEEALGEEEDSKERSQSSSAGELSESEYMVVD 93
Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159
L +I KDVQC ICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECP CR HCASRRSLR
Sbjct: 94 LADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSLR 153
Query: 160 DDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGK 219
DDPN+DALI+AL+ +IDK+EEEEL F +++ RNKQIQASIA++ QRQS+ALVKR++ GK
Sbjct: 154 DDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVKRKSVGK 213
Query: 220 DTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRP 279
TA + RRRRN R E SE N+D++ + GKDSSS+ E
Sbjct: 214 GTA----ILSRSRRSGGGSRRRRNCRNIEQDTSEANDDDDQNKRGKDSSSD-----EPCE 264
Query: 280 RRRKRRSGIRSSQPSSSAANSDGGCIENDLEVG--RESRGISPGLVWNPEMLAWGRGGTR 337
R+RK+RS ++QPSSS AN++ C N E R+SR ISP LVWN E++AWGRGGTR
Sbjct: 265 RQRKKRS---ATQPSSSNANNNDNCAGNGTEQTHQRDSRVISPVLVWNSELIAWGRGGTR 321
Query: 338 SNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYL 397
SNTR G+ + + S R+ RL +LVEYL SL+ N+ ELD+ L LVS DT+ +L +PYL
Sbjct: 322 SNTRQGNNNQ-GAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLLNLHEPYL 380
Query: 398 CCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETL 452
C +P+L VKQL E L+AEEVE+L+ K+ GN++ +T+++Q L+ ET+
Sbjct: 381 CFRPTLLVKQLREYVARHLKLKAEEVELLVSKDGDTVIGNKT----STEKMQSLQDDETV 436
Query: 453 AGLRVNHTSNTDHLILAYRQKQ 474
A L+V+ S+ ++I+ YR+KQ
Sbjct: 437 AKLKVDCISSNGYMIVVYRRKQ 458
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 98/213 (46%), Gaps = 42/213 (19%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 41 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 100
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKD 220
N+DALIS +YP D+YE ++ + R N+Q + +SI + + Q+
Sbjct: 101 NFDALISKIYPSRDEYEAHQDRVLAKLSRLHNQQALSSSIEEGLKMQA------------ 148
Query: 221 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 280
M R QR + H S T G EDN D SN E P
Sbjct: 149 -----MHRAQRVRKHQH-----ESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAG----PS 194
Query: 281 RRKRRS--------------GIRSSQPSSSAAN 299
R++ R+ G+RS P N
Sbjct: 195 RKRSRASEDSGAEPDLSHEGGVRSPDPPGGGEN 227
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 92/186 (49%), Gaps = 28/186 (15%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKD 220
N+DALIS +YP D+YE ++ + R N+Q + +SI + + Q+
Sbjct: 102 NFDALISKIYPSRDEYEAHQDRVLAKLNRLHNQQALSSSIEEGLKMQA------------ 149
Query: 221 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 280
M R QR + H S T G EDN D SN E P
Sbjct: 150 -----MHRAQRVRKHQH-----ESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAG----PS 195
Query: 281 RRKRRS 286
R++ R+
Sbjct: 196 RKRSRA 201
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
+ V + ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
RSLR DPN+DALIS +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 45 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 104
Query: 163 NYDALISALYPDIDKYE 179
N+DALIS +YP D+YE
Sbjct: 105 NFDALISKIYPSRDEYE 121
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161
Query: 218 GKD 220
G D
Sbjct: 162 GSD 164
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161
Query: 218 GKD 220
G D
Sbjct: 162 GSD 164
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 161
Query: 218 GKD 220
G D
Sbjct: 162 GSD 164
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161
Query: 218 GKD 220
G D
Sbjct: 162 GSD 164
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 218 GKD 220
G D
Sbjct: 133 GSD 135
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 218 GKD 220
G D
Sbjct: 133 GSD 135
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 218 GKD 220
G D
Sbjct: 133 GSD 135
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++K T T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72
Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
N+DALIS +YP ++YE ++ R N+Q + +SI + + Q+ V+R P
Sbjct: 73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132
Query: 218 GKD 220
G D
Sbjct: 133 GSD 135
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
+ ++ CPICL ++KKT T ECLHRFC +CI ++R GN ECP CR S+RSLR DP
Sbjct: 40 LHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADP 99
Query: 163 NYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKI 203
N+D LIS +YP ++YE A E+ + Q Q+ A +
Sbjct: 100 NFDLLISKIYPSREEYE----AIQEKVMAKFNQTQSQQALV 136
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 87 DTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNE 144
D S ++ E V L ++K ++CPICL +IK+ + +C H FC+ C+ K + R G ++
Sbjct: 2 DLSADRVEEVQNVLNAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQRKGPSQ 60
Query: 145 CPACRTHCASRRSLRDDPNYDALISALYPDIDKYE 179
CP C+ ++RSL++ + L+ L I +E
Sbjct: 61 CPLCKND-ITKRSLQESTRFSQLVEELLKIIHAFE 94
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159
L + ++++CPICL + + + C H FC CI KSM++ + CP C+ RR +R
Sbjct: 7 LERMGRELKCPICLSLYNSAVS-LSCNHVFCNACIVKSMKM-DATCPVCKIP-YHRREIR 63
Query: 160 DDPNYDALISALYPDID 176
P+ D+L+S +Y +++
Sbjct: 64 GAPHMDSLVS-IYKNME 79
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRS 157
L ++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 LHAMQKILECPICLELIKEPVST-QCDHIFCKFCMLKLLNQKKGPSQCPLCKNE-ITKRS 72
Query: 158 LRDDPNYDALISALYPDIDKYE 179
L+ + L+ L ID +E
Sbjct: 73 LQGSARFSQLVEELLKIIDAFE 94
>sp|O55735|121R_IIV6 Putative RING finger protein 121R OS=Invertebrate iridescent virus
6 GN=IIV6-121R PE=4 SV=1
Length = 89
Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 93 PEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 149
P+ +E+ ++K+V CPICL I K TV+EC H C C+ K N CP CR
Sbjct: 29 PKIPPIEIENVKKNVLCPICL--IAKVNTVLECTHVLCSNCVKKI-----NVCPICR 78
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 87 DTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNE 144
D S + E V L ++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++
Sbjct: 2 DLSADHVEEVQNVLNAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 145 CPACRTHCASRRSLRDDPNYDALISALYPDIDKYE 179
CP C+ ++RSL++ + L+ L I +E
Sbjct: 61 CPLCKNDI-TKRSLQESTRFSQLVEELLKIIHAFE 94
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2
SV=1
Length = 241
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCRI 57
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1
SV=1
Length = 242
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCRI 57
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCRI 57
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3
PE=2 SV=1
Length = 242
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
++L +I + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCRI 57
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2 PE=1
SV=1
Length = 344
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR- 156
+++ E+ + C +C G T++ECLH FC+ CI + + N CP C R
Sbjct: 7 IKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRP 65
Query: 157 --SLRDDPNYDALISALYPDIDK 177
S+R D ++ L P + K
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFK 88
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 160
++K ++CPICL +IK+ + +C H FCR C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCRFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 161 DPNYDALISALYPDIDKYE 179
+ L+ L I ++
Sbjct: 76 STRFSQLVEELLKIIHAFQ 94
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana
GN=At3g23060 PE=2 SV=1
Length = 480
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECI-DKSMRLGNNECPACRTHCA--SRRSL 158
E++ + CPIC K T+ ECLH FCR CI +K + N CP C + L
Sbjct: 9 EVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKL 68
Query: 159 RDDPNYDALISALY 172
R D + L +Y
Sbjct: 69 RSDCTWQDLKLKIY 82
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2 PE=1
SV=2
Length = 342
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR- 156
+++ E+ + C +C G T++ECLH FC+ CI + + N CP C R
Sbjct: 7 IKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLE-TNKYCPMCDVQVHKTRP 65
Query: 157 --SLRDDPNYDALISALYPDIDK 177
S+R D ++ L P + K
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFK 88
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 68 GEGDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLH 127
GEG EN+D G S + P++ KD+ CPIC+ IIK + C H
Sbjct: 23 GEGANR-HENDDGGSGGSE-----------IGAPDLDKDLLCPICMQIIKDA-FLTACGH 69
Query: 128 RFCRECIDKSMRLGNNECPACRTH 151
FC CI +R ++CP C H
Sbjct: 70 SFCYMCIITHLR-NKSDCPCCSQH 92
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDKYE 179
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 9 QESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQQLE--LQQNEQ--QQLEEDQKDDE 64
++ H + ++L+ Q+ Q S + H ++QL LQ++ Q Q+L ++ D E
Sbjct: 277 EQEQHLQSVKELKEIFQEEQQSMGSQKQAEEEHLKEQLAQALQEHTQLMQELNRNKNDFE 336
Query: 65 EVEGEGDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVME 124
++ ++E +E +++ E +K E + + ++QC IC + T +
Sbjct: 337 QIIQAKNKELQETKEEKE----KVCAQKEEVLNHMNDVLDNELQCIICSEHFIEAVT-LN 391
Query: 125 CLHRFCRECIDKSMRLGNNECPACRTHCASR-RSLRDDPNYDALISALYPDI 175
C H FC CI KS R ECP CR S RSL D D+++ L P++
Sbjct: 392 CAHSFCSYCI-KSWRKRKEECPICRQEILSETRSLVLDNCIDSMVDKLSPEM 442
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDKYE 179
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 160
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 161 DPNYDALISALYPDIDKYE 179
+ L+ L I ++
Sbjct: 76 STRFSQLVEELLKIICAFQ 94
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDKYE 179
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDKYE 179
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 160
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRSLQE 75
Query: 161 DPNYDALISALYPDIDKYE 179
+ L+ L I ++
Sbjct: 76 STRFSQLVEELLKIICAFQ 94
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 160
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQE 75
Query: 161 DPNYDALISALYPDIDKYE 179
+ L+ L I ++
Sbjct: 76 STRFSQLVEELLKIICAFQ 94
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDKYE 179
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
+++ E+ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDKYE 179
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 160
++K ++CPICL +IK+ + +C H FC+ C+ K + + G ++CP C+ ++RSL++
Sbjct: 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQE 75
Query: 161 DPNYDALISALYPDIDKYE 179
+ L+ L I ++
Sbjct: 76 STRFSQLVEELLKIICAFQ 94
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 94 EFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
E V V++ E+ + + C +C G T+ ECLH FC+ CI K ++ + CP C
Sbjct: 30 EVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQ-TSKYCPLC 83
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 94 EFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
E V V++ E+ + + C +C G T+ ECLH FC+ CI K ++ + CP C
Sbjct: 30 EVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQ-TSKYCPLC 83
>sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila melanogaster GN=Psc PE=1
SV=2
Length = 1601
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC-ASRR 156
V L + + C +C G + T++ECLH FC C+ +R CP C ++
Sbjct: 252 VLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLR-KERFCPRCEMVINNAKP 310
Query: 157 SLRDDPNYDALISALYPDIDKYEEEEL---AFHEE 188
+++ D A++ L P + YE E + AF+++
Sbjct: 311 NIKSDTTLQAIVYKLVPGL--YERELMRKRAFYKD 343
>sp|Q99NA9|PCGF6_MOUSE Polycomb group RING finger protein 6 OS=Mus musculus GN=Pcgf6 PE=1
SV=1
Length = 353
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
+ L E+ + C IC G + T+ ECLH FC+ CI + +N CP C
Sbjct: 125 LINLVELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKC 175
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 91 EKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
E P+F L ++ + C C ++ + T EC H C+ C+D+S + + CPACR
Sbjct: 692 EGPKF----LSKVEETFLCICCQEVVYEPITT-ECHHNICKGCLDRSFKALVHNCPACRH 746
Query: 151 HCASRRSLRDDPNYDALISALYPDIDK 177
SL + A++S L+P ++
Sbjct: 747 DLGKNYSLNVNKPLQAILSQLFPGYER 773
>sp|Q9BYE7|PCGF6_HUMAN Polycomb group RING finger protein 6 OS=Homo sapiens GN=PCGF6 PE=1
SV=2
Length = 350
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
+ L E+ + C IC G + T+ ECLH FC+ CI + +N CP C
Sbjct: 122 LINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKC 172
>sp|Q5XI70|PCGF6_RAT Polycomb group RING finger protein 6 OS=Rattus norvegicus GN=Pcgf6
PE=2 SV=1
Length = 351
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
+ L E+ + C IC G + T+ ECLH FC+ CI + +N CP C
Sbjct: 123 LINLVELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKC 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,812,331
Number of Sequences: 539616
Number of extensions: 8164463
Number of successful extensions: 129886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 1451
Number of HSP's that attempted gapping in prelim test: 71326
Number of HSP's gapped (non-prelim): 33664
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)