Query 011864
Match_columns 476
No_of_seqs 365 out of 1956
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311 Predicted E3 ubiquitin 100.0 1.7E-34 3.6E-39 288.3 11.6 335 96-475 33-379 (381)
2 PF15227 zf-C3HC4_4: zinc fing 99.1 2.8E-11 6.1E-16 87.9 3.1 39 109-148 1-42 (42)
3 smart00504 Ubox Modified RING 99.1 8.4E-11 1.8E-15 91.6 4.2 61 106-169 1-61 (63)
4 TIGR00599 rad18 DNA repair pro 99.0 1.3E-10 2.7E-15 121.6 4.7 70 99-171 19-88 (397)
5 PF14835 zf-RING_6: zf-RING of 99.0 9.5E-11 2.1E-15 91.7 1.3 63 102-168 3-65 (65)
6 PF04564 U-box: U-box domain; 99.0 2.6E-10 5.6E-15 92.4 3.7 67 104-172 2-68 (73)
7 PLN03208 E3 ubiquitin-protein 99.0 3.5E-10 7.6E-15 107.1 4.2 50 104-154 16-80 (193)
8 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.9E-10 8.5E-15 80.3 2.8 39 109-148 1-39 (39)
9 KOG0287 Postreplication repair 98.9 3.4E-10 7.5E-15 113.7 1.4 70 100-172 17-86 (442)
10 KOG0317 Predicted E3 ubiquitin 98.9 1.2E-09 2.6E-14 108.3 4.0 49 104-154 237-285 (293)
11 KOG0823 Predicted E3 ubiquitin 98.8 1.4E-09 3.1E-14 104.9 2.4 49 105-154 46-96 (230)
12 PF13639 zf-RING_2: Ring finge 98.8 1.4E-09 3E-14 79.4 1.7 41 108-149 2-44 (44)
13 PF00097 zf-C3HC4: Zinc finger 98.8 3.1E-09 6.6E-14 76.1 3.0 40 109-148 1-41 (41)
14 KOG0320 Predicted E3 ubiquitin 98.8 4.5E-09 9.8E-14 97.6 4.1 50 104-155 129-180 (187)
15 PF13920 zf-C3HC4_3: Zinc fing 98.8 5E-09 1.1E-13 78.6 3.1 46 106-153 2-48 (50)
16 COG5432 RAD18 RING-finger-cont 98.8 4.7E-09 1E-13 103.8 3.7 70 100-172 19-88 (391)
17 cd00162 RING RING-finger (Real 98.7 6.6E-09 1.4E-13 74.1 3.3 44 108-151 1-44 (45)
18 KOG2177 Predicted E3 ubiquitin 98.7 2.6E-09 5.6E-14 103.8 1.3 85 101-190 8-104 (386)
19 PHA02929 N1R/p28-like protein; 98.7 6.6E-09 1.4E-13 102.1 3.8 49 105-154 173-228 (238)
20 KOG2660 Locus-specific chromos 98.7 6.3E-09 1.4E-13 104.9 2.5 79 97-176 6-87 (331)
21 PHA02926 zinc finger-like prot 98.5 4.6E-08 9.9E-13 94.1 3.2 52 103-154 167-231 (242)
22 smart00184 RING Ring finger. E 98.5 9.1E-08 2E-12 65.8 3.0 39 109-148 1-39 (39)
23 KOG2164 Predicted E3 ubiquitin 98.5 6.6E-08 1.4E-12 102.4 2.5 54 106-161 186-243 (513)
24 TIGR00570 cdk7 CDK-activating 98.4 7.1E-07 1.5E-11 90.5 9.2 49 106-154 3-55 (309)
25 PF13445 zf-RING_UBOX: RING-ty 98.4 1.1E-07 2.4E-12 69.5 2.0 36 109-146 1-43 (43)
26 COG5574 PEX10 RING-finger-cont 98.4 9.5E-08 2.1E-12 93.9 2.1 50 104-154 213-263 (271)
27 PF14634 zf-RING_5: zinc-RING 98.4 1.9E-07 4.2E-12 68.2 2.9 42 108-150 1-44 (44)
28 PF12678 zf-rbx1: RING-H2 zinc 98.4 2.2E-07 4.7E-12 75.4 3.5 41 108-149 21-73 (73)
29 KOG0978 E3 ubiquitin ligase in 98.3 1.8E-07 3.9E-12 103.2 0.6 62 97-160 634-695 (698)
30 KOG4628 Predicted E3 ubiquitin 98.2 8.4E-07 1.8E-11 91.3 3.1 48 107-154 230-279 (348)
31 COG5540 RING-finger-containing 98.1 1.1E-06 2.4E-11 87.8 2.7 49 106-154 323-373 (374)
32 KOG0824 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 83.2 2.0 47 107-154 8-54 (324)
33 COG5243 HRD1 HRD ubiquitin lig 97.8 1.1E-05 2.3E-10 82.8 2.6 47 105-153 286-345 (491)
34 PF11789 zf-Nse: Zinc-finger o 97.8 1.2E-05 2.5E-10 62.4 2.1 43 105-147 10-53 (57)
35 KOG0297 TNF receptor-associate 97.8 1.4E-05 3.1E-10 84.3 3.3 69 102-171 17-85 (391)
36 KOG0802 E3 ubiquitin ligase [P 97.8 8.6E-06 1.9E-10 89.4 1.5 47 106-154 291-342 (543)
37 KOG4159 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 84.6 2.3 50 103-154 81-130 (398)
38 COG5152 Uncharacterized conser 97.7 1.3E-05 2.8E-10 75.9 2.2 59 106-168 196-254 (259)
39 KOG2879 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 78.5 2.7 49 105-153 238-287 (298)
40 PF12861 zf-Apc11: Anaphase-pr 97.7 2.6E-05 5.7E-10 64.9 3.2 48 106-153 21-82 (85)
41 COG5222 Uncharacterized conser 97.6 4.5E-05 9.7E-10 76.3 3.2 44 107-150 275-318 (427)
42 KOG4172 Predicted E3 ubiquitin 97.3 5.3E-05 1.1E-09 57.7 0.3 46 107-153 8-54 (62)
43 KOG1813 Predicted E3 ubiquitin 97.3 8.9E-05 1.9E-09 74.3 1.7 47 106-154 241-287 (313)
44 KOG0804 Cytoplasmic Zn-finger 97.3 9.6E-05 2.1E-09 77.6 1.8 48 103-153 172-222 (493)
45 KOG4367 Predicted Zn-finger pr 97.1 0.00025 5.4E-09 74.1 2.8 34 104-138 2-35 (699)
46 COG5219 Uncharacterized conser 97.1 0.00019 4.1E-09 80.8 1.1 50 104-153 1467-1523(1525)
47 KOG4739 Uncharacterized protei 96.9 0.0028 6E-08 62.2 7.9 44 108-154 5-49 (233)
48 KOG1039 Predicted E3 ubiquitin 96.9 0.00038 8.2E-09 72.1 1.9 50 104-153 159-221 (344)
49 KOG0828 Predicted E3 ubiquitin 96.9 0.00044 9.5E-09 73.4 1.8 50 104-153 569-634 (636)
50 KOG0825 PHD Zn-finger protein 96.9 0.00025 5.3E-09 78.6 -0.2 50 104-154 121-172 (1134)
51 KOG4692 Predicted E3 ubiquitin 96.7 0.00074 1.6E-08 69.2 2.1 47 105-153 421-467 (489)
52 KOG1645 RING-finger-containing 96.7 0.0021 4.5E-08 67.1 5.0 49 106-154 4-57 (463)
53 KOG1734 Predicted RING-contain 96.6 0.00062 1.3E-08 67.5 0.7 50 105-155 223-283 (328)
54 KOG1002 Nucleotide excision re 96.5 0.0011 2.4E-08 70.9 1.4 49 105-154 535-587 (791)
55 PF11793 FANCL_C: FANCL C-term 96.4 0.00099 2.1E-08 53.7 0.5 49 106-154 2-67 (70)
56 KOG0827 Predicted E3 ubiquitin 96.3 0.0038 8.2E-08 64.8 4.3 48 107-154 5-57 (465)
57 KOG1785 Tyrosine kinase negati 96.2 0.0019 4.1E-08 67.2 1.5 50 108-158 371-421 (563)
58 KOG4265 Predicted E3 ubiquitin 96.2 0.0025 5.4E-08 65.7 2.1 47 106-154 290-337 (349)
59 COG5194 APC11 Component of SCF 96.0 0.0051 1.1E-07 50.5 2.7 34 120-154 49-82 (88)
60 PF04641 Rtf2: Rtf2 RING-finge 95.9 0.0058 1.3E-07 61.2 3.2 56 104-161 111-169 (260)
61 KOG3800 Predicted E3 ubiquitin 95.8 0.0067 1.5E-07 61.0 3.3 47 108-154 2-52 (300)
62 smart00744 RINGv The RING-vari 95.7 0.009 1.9E-07 44.8 2.8 41 108-149 1-49 (49)
63 KOG3039 Uncharacterized conser 95.4 0.011 2.4E-07 58.2 2.7 50 104-154 219-271 (303)
64 KOG4275 Predicted E3 ubiquitin 95.2 0.0039 8.4E-08 62.6 -0.8 42 106-153 300-342 (350)
65 COG5220 TFB3 Cdk activating ki 95.1 0.022 4.7E-07 55.9 3.9 49 106-154 10-65 (314)
66 KOG1571 Predicted E3 ubiquitin 95.1 0.011 2.4E-07 61.1 2.0 45 105-154 304-348 (355)
67 PF14570 zf-RING_4: RING/Ubox 95.0 0.019 4.2E-07 43.0 2.5 44 109-152 1-47 (48)
68 KOG1493 Anaphase-promoting com 94.9 0.0063 1.4E-07 49.6 -0.3 31 123-153 49-81 (84)
69 KOG0826 Predicted E3 ubiquitin 94.9 0.014 3E-07 59.6 2.0 48 104-152 298-345 (357)
70 PF05290 Baculo_IE-1: Baculovi 94.9 0.021 4.6E-07 51.3 2.9 58 95-154 71-133 (140)
71 KOG4185 Predicted E3 ubiquitin 94.7 0.021 4.5E-07 57.8 2.8 63 107-170 4-76 (296)
72 KOG1001 Helicase-like transcri 94.5 0.015 3.2E-07 65.6 1.3 46 107-154 455-501 (674)
73 KOG2930 SCF ubiquitin ligase, 94.4 0.02 4.4E-07 49.2 1.6 45 106-151 46-106 (114)
74 KOG1941 Acetylcholine receptor 94.3 0.018 3.9E-07 60.0 1.3 49 105-153 364-416 (518)
75 KOG3002 Zn finger protein [Gen 94.2 0.029 6.3E-07 57.4 2.4 65 103-175 45-109 (299)
76 PF14447 Prok-RING_4: Prokaryo 93.8 0.038 8.3E-07 42.4 1.9 46 105-154 6-51 (55)
77 KOG4445 Uncharacterized conser 93.4 0.02 4.4E-07 57.8 -0.2 50 105-154 114-187 (368)
78 COG5175 MOT2 Transcriptional r 92.9 0.054 1.2E-06 55.6 1.8 47 108-154 16-65 (480)
79 PF02891 zf-MIZ: MIZ/SP-RING z 92.6 0.088 1.9E-06 39.7 2.2 45 106-151 2-50 (50)
80 KOG2114 Vacuolar assembly/sort 92.0 0.25 5.5E-06 56.2 5.8 41 106-150 840-880 (933)
81 COG5236 Uncharacterized conser 92.0 0.1 2.2E-06 53.8 2.5 47 104-151 59-106 (493)
82 KOG4362 Transcriptional regula 91.8 0.051 1.1E-06 60.8 0.2 67 101-169 16-84 (684)
83 KOG2932 E3 ubiquitin ligase in 91.4 0.084 1.8E-06 53.7 1.2 46 106-154 90-135 (389)
84 KOG3161 Predicted E3 ubiquitin 91.4 0.087 1.9E-06 58.1 1.4 40 103-146 8-51 (861)
85 KOG1814 Predicted E3 ubiquitin 91.3 0.15 3.2E-06 53.8 3.0 47 104-150 182-237 (445)
86 PF10367 Vps39_2: Vacuolar sor 90.9 0.098 2.1E-06 44.4 1.0 32 104-135 76-108 (109)
87 KOG0298 DEAD box-containing he 90.2 0.069 1.5E-06 63.0 -0.7 51 102-153 1149-1199(1394)
88 PF08746 zf-RING-like: RING-li 89.9 0.28 6.2E-06 35.8 2.6 40 109-148 1-43 (43)
89 KOG3970 Predicted E3 ubiquitin 89.9 0.33 7.1E-06 47.5 3.7 48 106-154 50-106 (299)
90 KOG2817 Predicted E3 ubiquitin 89.0 0.26 5.7E-06 51.8 2.5 49 103-151 331-383 (394)
91 PHA03096 p28-like protein; Pro 88.7 0.23 5E-06 50.6 1.8 44 107-150 179-231 (284)
92 KOG3039 Uncharacterized conser 85.5 0.53 1.1E-05 46.7 2.2 36 103-139 40-75 (303)
93 KOG1100 Predicted E3 ubiquitin 85.1 2.1 4.6E-05 41.6 6.2 40 109-154 161-201 (207)
94 KOG3579 Predicted E3 ubiquitin 84.9 0.38 8.2E-06 48.6 0.9 35 105-140 267-305 (352)
95 PF07800 DUF1644: Protein of u 84.3 0.88 1.9E-05 42.4 2.9 33 106-139 2-47 (162)
96 PF03854 zf-P11: P-11 zinc fin 83.5 0.7 1.5E-05 34.6 1.6 43 108-154 4-47 (50)
97 PF05883 Baculo_RING: Baculovi 82.6 0.5 1.1E-05 42.8 0.7 34 106-139 26-67 (134)
98 KOG1952 Transcription factor N 81.4 0.87 1.9E-05 52.0 2.1 50 104-153 189-247 (950)
99 PF14569 zf-UDP: Zinc-binding 81.2 1.2 2.7E-05 36.6 2.4 49 106-154 9-63 (80)
100 PHA02862 5L protein; Provision 80.6 1.2 2.6E-05 40.9 2.4 46 107-154 3-54 (156)
101 KOG1428 Inhibitor of type V ad 80.6 1.3 2.9E-05 53.2 3.2 50 105-154 3485-3545(3738)
102 KOG3268 Predicted E3 ubiquitin 79.4 1.2 2.7E-05 42.2 2.0 54 101-154 160-229 (234)
103 PHA02825 LAP/PHD finger-like p 79.1 1.9 4.2E-05 40.2 3.2 47 106-154 8-60 (162)
104 PF07975 C1_4: TFIIH C1-like d 78.3 1.9 4E-05 32.9 2.4 40 109-149 2-50 (51)
105 KOG1940 Zn-finger protein [Gen 76.5 1.4 3.1E-05 44.6 1.7 44 106-150 158-204 (276)
106 PF10272 Tmpp129: Putative tra 75.8 1.7 3.6E-05 45.8 2.0 30 125-154 311-352 (358)
107 KOG2034 Vacuolar sorting prote 75.5 1.4 3E-05 50.7 1.5 37 103-139 814-851 (911)
108 KOG1812 Predicted E3 ubiquitin 75.0 1.5 3.3E-05 46.5 1.5 41 106-148 306-351 (384)
109 PF12906 RINGv: RING-variant d 74.1 2.3 5E-05 31.5 1.9 39 109-148 1-47 (47)
110 PF02991 Atg8: Autophagy prote 73.8 3.2 6.9E-05 36.1 3.0 78 377-472 17-99 (104)
111 KOG1812 Predicted E3 ubiquitin 73.4 1.7 3.7E-05 46.2 1.4 34 106-139 146-182 (384)
112 PF02318 FYVE_2: FYVE-type zin 72.7 3.9 8.4E-05 36.1 3.3 45 106-150 54-102 (118)
113 KOG0825 PHD Zn-finger protein 70.5 3.1 6.8E-05 47.4 2.7 48 106-153 96-154 (1134)
114 KOG3113 Uncharacterized conser 70.3 3.9 8.5E-05 40.9 3.0 56 104-162 109-167 (293)
115 PLN02189 cellulose synthase 68.8 3.3 7.1E-05 48.9 2.5 48 107-154 35-88 (1040)
116 KOG3899 Uncharacterized conser 68.5 2.7 5.9E-05 42.8 1.5 30 125-154 325-366 (381)
117 KOG2169 Zn-finger transcriptio 68.3 3.3 7.1E-05 46.9 2.3 65 103-168 303-370 (636)
118 KOG0309 Conserved WD40 repeat- 67.3 3.4 7.4E-05 46.9 2.2 46 106-152 1028-1075(1081)
119 PF11816 DUF3337: Domain of un 66.8 5.1 0.00011 41.6 3.3 108 361-474 198-330 (331)
120 PLN02436 cellulose synthase A 66.4 4 8.7E-05 48.3 2.6 48 107-154 37-90 (1094)
121 KOG1815 Predicted E3 ubiquitin 65.9 3.1 6.8E-05 44.9 1.5 37 104-140 68-104 (444)
122 PLN02638 cellulose synthase A 65.3 4.5 9.8E-05 47.9 2.7 48 107-154 18-71 (1079)
123 cd01611 GABARAP Ubiquitin doma 64.5 10 0.00022 33.4 4.2 79 377-474 25-109 (112)
124 COG3813 Uncharacterized protei 64.5 3.9 8.6E-05 33.3 1.4 33 125-161 27-59 (84)
125 COG5109 Uncharacterized conser 62.4 6.6 0.00014 40.5 2.9 48 102-150 332-384 (396)
126 PF07191 zinc-ribbons_6: zinc- 61.2 1.6 3.4E-05 35.4 -1.3 42 106-154 1-42 (70)
127 PLN02400 cellulose synthase 60.9 5 0.00011 47.6 2.0 49 106-154 36-90 (1085)
128 KOG4718 Non-SMC (structural ma 59.2 4.8 0.0001 39.3 1.3 46 106-152 181-226 (235)
129 PLN02195 cellulose synthase A 57.9 7.6 0.00016 45.7 2.8 47 107-153 7-59 (977)
130 KOG3799 Rab3 effector RIM1 and 57.2 16 0.00034 33.4 4.1 38 105-154 64-101 (169)
131 PF06906 DUF1272: Protein of u 55.5 9.3 0.0002 29.6 2.0 44 108-154 7-53 (57)
132 PF04216 FdhE: Protein involve 53.9 3.9 8.4E-05 41.5 -0.3 45 106-151 172-220 (290)
133 PLN02915 cellulose synthase A 53.7 9.3 0.0002 45.3 2.7 49 106-154 15-69 (1044)
134 KOG2068 MOT2 transcription fac 52.8 9.4 0.0002 39.6 2.2 48 106-154 249-299 (327)
135 KOG1819 FYVE finger-containing 52.1 23 0.0005 38.7 5.1 30 106-135 901-933 (990)
136 PF06844 DUF1244: Protein of u 51.7 7.6 0.00016 31.1 1.1 12 128-139 11-22 (68)
137 TIGR00622 ssl1 transcription f 51.2 14 0.00031 32.6 2.8 42 107-149 56-110 (112)
138 KOG3053 Uncharacterized conser 49.6 13 0.00028 37.4 2.6 50 105-154 19-83 (293)
139 COG0068 HypF Hydrogenase matur 49.1 8.3 0.00018 43.8 1.3 51 104-154 99-185 (750)
140 PF10571 UPF0547: Uncharacteri 49.0 8.9 0.00019 25.1 0.9 22 108-129 2-24 (26)
141 PF05605 zf-Di19: Drought indu 48.9 9.1 0.0002 28.9 1.1 37 106-150 2-39 (54)
142 KOG0824 Predicted E3 ubiquitin 47.8 6.3 0.00014 40.4 0.1 49 104-153 103-151 (324)
143 PF10497 zf-4CXXC_R1: Zinc-fin 47.8 19 0.00041 31.3 3.0 29 126-154 37-73 (105)
144 cd01612 APG12_C Ubiquitin-like 47.2 34 0.00073 28.7 4.4 67 388-473 11-83 (87)
145 KOG2807 RNA polymerase II tran 44.2 14 0.0003 38.4 1.9 42 107-149 331-374 (378)
146 smart00064 FYVE Protein presen 43.1 12 0.00026 29.3 1.0 34 106-139 10-46 (68)
147 cd00065 FYVE FYVE domain; Zinc 42.9 9.6 0.00021 28.6 0.4 33 107-139 3-38 (57)
148 COG5627 MMS21 DNA repair prote 42.6 13 0.00028 36.9 1.4 44 104-147 187-231 (275)
149 KOG2979 Protein involved in DN 42.5 12 0.00026 37.6 1.1 43 105-147 175-218 (262)
150 TIGR00143 hypF [NiFe] hydrogen 42.1 12 0.00026 43.0 1.2 50 105-154 67-152 (711)
151 KOG2231 Predicted E3 ubiquitin 41.3 11 0.00024 42.7 0.7 46 108-154 2-53 (669)
152 KOG4185 Predicted E3 ubiquitin 41.1 5.5 0.00012 40.2 -1.5 45 106-151 207-265 (296)
153 PF14353 CpXC: CpXC protein 40.0 23 0.00051 31.2 2.5 47 107-154 2-50 (128)
154 TIGR01562 FdhE formate dehydro 39.7 9.4 0.0002 39.4 -0.1 44 106-150 184-232 (305)
155 KOG2462 C2H2-type Zn-finger pr 39.7 8.9 0.00019 38.8 -0.3 53 104-156 159-229 (279)
156 KOG3362 Predicted BBOX Zn-fing 39.1 9.5 0.00021 35.1 -0.2 27 106-134 118-145 (156)
157 PRK04023 DNA polymerase II lar 39.1 22 0.00049 42.0 2.7 46 105-154 625-675 (1121)
158 PF01363 FYVE: FYVE zinc finge 38.6 13 0.00029 29.1 0.6 35 105-139 8-45 (69)
159 PF11931 DUF3449: Domain of un 35.5 19 0.00041 34.9 1.3 38 96-134 91-134 (196)
160 PF01485 IBR: IBR domain; Int 34.8 9.5 0.00021 28.9 -0.8 32 107-138 19-59 (64)
161 KOG1356 Putative transcription 34.7 12 0.00025 43.3 -0.3 50 105-154 228-283 (889)
162 PRK03564 formate dehydrogenase 34.5 17 0.00037 37.6 0.9 45 105-150 186-234 (309)
163 KOG1829 Uncharacterized conser 32.9 17 0.00038 40.6 0.6 42 105-150 510-558 (580)
164 PF12773 DZR: Double zinc ribb 32.8 34 0.00074 25.0 2.0 26 128-153 13-40 (50)
165 KOG3842 Adaptor protein Pellin 32.4 29 0.00063 36.0 2.0 49 105-154 340-415 (429)
166 PF13719 zinc_ribbon_5: zinc-r 32.1 25 0.00055 24.6 1.1 13 107-119 3-15 (37)
167 smart00647 IBR In Between Ring 31.8 14 0.00031 27.9 -0.2 32 108-139 20-60 (64)
168 COG3492 Uncharacterized protei 30.1 24 0.00053 30.0 0.9 13 128-140 42-54 (104)
169 PF14451 Ub-Mut7C: Mut7-C ubiq 28.6 47 0.001 27.6 2.3 32 397-428 27-59 (81)
170 smart00249 PHD PHD zinc finger 28.2 31 0.00068 23.8 1.1 29 108-136 1-31 (47)
171 PF14446 Prok-RING_1: Prokaryo 27.9 44 0.00095 25.8 1.9 42 106-152 5-51 (54)
172 KOG2113 Predicted RNA binding 27.8 36 0.00077 35.3 1.8 45 104-152 341-386 (394)
173 KOG0269 WD40 repeat-containing 27.7 52 0.0011 37.9 3.1 48 106-154 779-829 (839)
174 PF04710 Pellino: Pellino; In 27.1 21 0.00045 38.0 0.0 45 106-153 277-339 (416)
175 COG5183 SSM4 Protein involved 27.0 48 0.001 38.5 2.7 48 106-154 12-67 (1175)
176 PF13717 zinc_ribbon_4: zinc-r 27.0 35 0.00075 23.8 1.1 12 107-118 3-14 (36)
177 PF05502 Dynactin_p62: Dynacti 26.6 29 0.00062 38.1 1.0 52 103-154 2-64 (483)
178 PTZ00303 phosphatidylinositol 26.0 31 0.00066 39.9 1.0 52 353-405 921-976 (1374)
179 COG3364 Zn-ribbon containing p 25.2 37 0.00081 29.6 1.2 27 119-150 2-28 (112)
180 PF10235 Cript: Microtubule-as 24.8 51 0.0011 28.1 1.9 38 106-154 44-81 (90)
181 KOG0314 Predicted E3 ubiquitin 24.0 39 0.00085 36.7 1.4 51 98-150 211-263 (448)
182 KOG2186 Cell growth-regulating 23.6 35 0.00076 34.3 0.8 31 107-137 4-54 (276)
183 smart00154 ZnF_AN1 AN1-like Zi 23.4 47 0.001 23.6 1.3 24 109-132 1-25 (39)
184 KOG1815 Predicted E3 ubiquitin 23.4 47 0.001 35.9 1.8 20 118-138 178-197 (444)
185 PF09538 FYDLN_acid: Protein o 23.3 39 0.00085 29.6 1.0 25 130-154 12-38 (108)
186 KOG1029 Endocytic adaptor prot 23.1 87 0.0019 36.3 3.8 10 126-135 477-486 (1118)
187 PTZ00380 microtubule-associate 23.0 47 0.001 29.8 1.4 58 396-472 44-106 (121)
188 PF13901 DUF4206: Domain of un 22.3 67 0.0014 31.0 2.5 41 104-150 150-197 (202)
189 PF01428 zf-AN1: AN1-like Zinc 22.1 44 0.00096 24.1 0.9 26 109-134 1-28 (43)
190 PF13240 zinc_ribbon_2: zinc-r 21.8 24 0.00053 22.2 -0.4 8 143-150 14-21 (23)
191 KOG1814 Predicted E3 ubiquitin 21.4 41 0.00089 36.1 0.9 33 106-138 368-405 (445)
192 KOG1609 Protein involved in mR 21.4 39 0.00085 33.9 0.7 48 106-154 78-135 (323)
193 KOG0289 mRNA splicing factor [ 20.6 5.5E+02 0.012 28.1 8.9 47 107-154 1-47 (506)
194 PRK14559 putative protein seri 20.2 57 0.0012 37.2 1.7 45 108-153 3-52 (645)
195 PF09845 DUF2072: Zn-ribbon co 20.1 52 0.0011 29.9 1.1 28 119-151 1-28 (131)
No 1
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=288.26 Aligned_cols=335 Identities=41% Similarity=0.598 Sum_probs=263.1
Q ss_pred eecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864 96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (476)
Q Consensus 96 ~~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c 175 (476)
+.+.+..+...+.|+||++++...+++..|+|.||..||...+..+++.||.||+.+.+.+.+++++.+..+|.++++.+
T Consensus 33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~si 112 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPSI 112 (381)
T ss_pred heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhccH
Confidence 77888899999999999999999998888999999999999999888999999999999999999999999999999999
Q ss_pred hhhHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCCCccccCCCCCCCCCCCCCC--
Q 011864 176 DKYEEEELAFHEEERTR-NKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGS-- 252 (476)
Q Consensus 176 ~~~ee~l~~fceeeq~~-r~~lq~~l~~~l~~q~e~l~k~~~~~k~~~~~~k~r~~~n~~~~~~R~Rr~~r~~~~~g~-- 252 (476)
..++.....|.+.+... ++.|+..+++.++.+...+.+++...+- ++.+. ..+++++++.+.+.....
T Consensus 113 e~~e~~q~~~~ekd~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~-------~s~r~--g~Gs~~~gn~r~~~~s~~~a 183 (381)
T KOG0311|consen 113 EEYEAPQPRFMEKDDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL-------RSIRW--GGGSRRRGNVRNVEQSKKSA 183 (381)
T ss_pred HHHhccchhHHhhHHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc-------ccccc--cCCCCCCCCcccchhccccC
Confidence 99999888888876664 4469999999999999998887764332 22222 335677777777543222
Q ss_pred --CCCCCCCCCCCCCCCCCCcccccccchhhhhccCCCCCCC-CCCCCCC-CCCCCCcccccccccccCCCCCCccCccc
Q 011864 253 --EDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRESRGISPGLVWNPEM 328 (476)
Q Consensus 253 --~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~rr~~~~r~~q-~~ss~~~-~~~~~~~~~~~~~re~~~~~~~~~~~~~~ 328 (476)
+++...+.++.++++++ |+. ....+.-++..+..+ ++++.++ .++.++.+|.+..+++.++++++||+.|.
T Consensus 184 ~~ea~~~~~~n~rg~~ss~-d~~----~~~~~~~~S~d~~~~~~~~s~as~~~~~~~~a~te~~~~~~~i~r~~v~~~e~ 258 (381)
T KOG0311|consen 184 PKEADGNDDENDRGKDSSS-DEL----MDFPREIRSSDREQTHPSSSGASMNDSNCAGADTEDVRDSSTISRTLVWNRES 258 (381)
T ss_pred CccCCCccccccccccccc-ccc----ccccccccccccccCCCCccccccCCCcccCCCCccccccccccccccccccc
Confidence 33333444445555544 444 223333334444344 5666666 67888888888889999999999999999
Q ss_pred ccccCCCCCcCccCCCC-CCCCCCCccchhHHHHHHHHHhhhccCCceeEEEEEeecCCCCCCCCCCCccccCCCchhhh
Q 011864 329 LAWGRGGTRSNTRHGSA-SGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQ 407 (476)
Q Consensus 329 ~~~g~~~~rs~~r~g~~-~~~~~~~~r~~~~~k~~~~l~~~~~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~ 407 (476)
.+||++|+++.||+|++ +|+-.+.+|+++..++++|+...+...+++.-
T Consensus 259 ~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~~~~~------------------------------ 308 (381)
T KOG0311|consen 259 SESGRGGTRSNTRNGNNKMGRKSLAVRNALEVRLSEYDGSVEGTSNIKVA------------------------------ 308 (381)
T ss_pred chhccCCccccccccccccccchhhhhHHHHHHhhhhccccccccccccc------------------------------
Confidence 99999999999999996 66767778999999999999966666655441
Q ss_pred hhccCCCccceEEEEEecccc--cCCCCCC--CCCChhhhhhcccccccccccccccCCCCcchhhhhhhhc
Q 011864 408 LCETPLQAEEVEILMVKERLD--AKGNQST--PIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQS 475 (476)
Q Consensus 408 l~~~~~~~~e~e~~~~~~~~~--~~~~~~~--~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~l~~~y~~k~~ 475 (476)
-+..+..+++|+++.....- .+.+.-+ ..+.++++.+|++.+||+.++.+||..++.++|-|..|.+
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~d~~~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m~l~~~~kk~ 379 (381)
T KOG0311|consen 309 -KKKPLKREEVELLVELIHPLDTASENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPMELSYHEKKI 379 (381)
T ss_pred -ccCCcccccccccccccccccccccccceeEeecCCCceEEecccchHHHHhhhhhhcccchhhhhchhcc
Confidence 14678888888888777211 2222111 1389999999999999999999999999999999998865
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.14 E-value=2.8e-11 Score=87.90 Aligned_cols=39 Identities=38% Similarity=1.092 Sum_probs=31.0
Q ss_pred ccccccccccceeecccCCccchhHHHhhhhcCC---CCCCCc
Q 011864 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN---NECPAC 148 (476)
Q Consensus 109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~---~~CP~C 148 (476)
||||+++|.+||+ ++|||+||..||..|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999998 99999999999999998432 479987
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.09 E-value=8.4e-11 Score=91.56 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=53.4
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHH
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 169 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~ 169 (476)
++.||||.+++.+||. ++|||+||..||..|+.. ...||.|+..+.. .++.++..+.+.|.
T Consensus 1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~-~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH-EDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh-hhceeCHHHHHHHH
Confidence 3689999999999996 899999999999999985 6789999999865 66888888877764
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.3e-10 Score=121.59 Aligned_cols=70 Identities=23% Similarity=0.578 Sum_probs=60.2
Q ss_pred ccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 171 (476)
Q Consensus 99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l 171 (476)
.+..++..+.|+||+++|..|+. ++|||+||..||..|+.. ...||.|+..+.. ..+..|+.|.++|..+
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pvi-tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVL-TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE-SKLRSNWLVSEIVESF 88 (397)
T ss_pred cccccccccCCCcCchhhhCccC-CCCCCchhHHHHHHHHhC-CCCCCCCCCcccc-ccCccchHHHHHHHHH
Confidence 45667889999999999999995 999999999999999984 4689999999875 4688899888888544
No 5
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.00 E-value=9.5e-11 Score=91.74 Aligned_cols=63 Identities=29% Similarity=0.727 Sum_probs=36.4
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHH
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI 168 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (476)
.++..+.|++|.++|..||.+..|.|.||..||...+. ..||+|..+... ++++.|..|+++|
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~-qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI-QDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHH-HHHHhhhhhhccC
Confidence 35667899999999999998899999999999988765 459999999887 7899999998875
No 6
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.00 E-value=2.6e-10 Score=92.39 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=53.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
.+.|.||||..+|.+||. ++|||+|++.||..|+..+...||.|+.++.. ..+.+|..|.+.|..+.
T Consensus 2 P~~f~CpIt~~lM~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLSE-SDLIPNRALKSAIEEWC 68 (73)
T ss_dssp SGGGB-TTTSSB-SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG-GGSEE-HHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc-ccceECHHHHHHHHHHH
Confidence 357899999999999996 89999999999999999767899999999886 67899999988886654
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.97 E-value=3.5e-10 Score=107.12 Aligned_cols=50 Identities=30% Similarity=0.717 Sum_probs=42.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhc---------------CCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---------------GNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~---------------~~~~CP~CR~~~~~ 154 (476)
...+.|+||++.+.+|+. ++|||.||..||..|+.. ....||+||..++.
T Consensus 16 ~~~~~CpICld~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 346899999999999996 899999999999999852 23589999998865
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.95 E-value=3.9e-10 Score=80.30 Aligned_cols=39 Identities=46% Similarity=1.157 Sum_probs=34.3
Q ss_pred ccccccccccceeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148 (476)
Q Consensus 109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~C 148 (476)
|+||++.+.+|+.+++|||.||..||..|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999767999999999999999996 6899988
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.91 E-value=3.4e-10 Score=113.70 Aligned_cols=70 Identities=26% Similarity=0.610 Sum_probs=60.7
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
+..+...+.|-||.++|..|+. +||+|+||..||..++. ....||.|+..+.. ..++.++.+..+|..+.
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~i-tpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMI-TPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTE-SDLRNNRILDEIVKSLN 86 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCcee-ccccchHHHHHHHHHhc-cCCCCCceecccch-hhhhhhhHHHHHHHHHH
Confidence 3445677899999999999995 99999999999999998 45889999999987 67999999999886654
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-09 Score=108.30 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=43.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+....|.||++...+|.. +||||.||+.||..|... ...||+||..+..
T Consensus 237 ~a~~kC~LCLe~~~~pSa-TpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSA-TPCGHIFCWSCILEWCSE-KAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCc-CcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence 446799999999999996 999999999999999984 4779999998876
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.4e-09 Score=104.90 Aligned_cols=49 Identities=29% Similarity=0.717 Sum_probs=43.6
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~ 154 (476)
..+.|.||++.-.+||. +.|||.||+.||.+|+.. +...||+|+..++.
T Consensus 46 ~~FdCNICLd~akdPVv-TlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVV-TLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccCCCEE-eecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 36889999999999996 999999999999999984 34589999998876
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.82 E-value=1.4e-09 Score=79.35 Aligned_cols=41 Identities=41% Similarity=0.983 Sum_probs=34.5
Q ss_pred cccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864 108 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACR 149 (476)
Q Consensus 108 ~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR 149 (476)
.|+||++.|. ..+..++|||.||..||..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999985 45556899999999999999995 57999997
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.80 E-value=3.1e-09 Score=76.10 Aligned_cols=40 Identities=40% Similarity=1.075 Sum_probs=36.6
Q ss_pred ccccccccccceeecccCCccchhHHHhhhh-cCCCCCCCc
Q 011864 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPAC 148 (476)
Q Consensus 109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~C 148 (476)
|+||++.+..|+.+++|||.||..||..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999999996699999999999999998 556789988
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.5e-09 Score=97.64 Aligned_cols=50 Identities=32% Similarity=0.932 Sum_probs=42.4
Q ss_pred cccccccccccccccc--eeecccCCccchhHHHhhhhcCCCCCCCcccccccC
Q 011864 104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~ 155 (476)
...+.|||||+-+..- +. +.|||.||..||...++ ....||.|++.++.+
T Consensus 129 ~~~~~CPiCl~~~sek~~vs-TkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVS-TKCGHVFCSQCIKDALK-NTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccccc-cccchhHHHHHHHHHHH-hCCCCCCcccccchh
Confidence 3458999999988754 44 89999999999999999 558999999988763
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.76 E-value=5e-09 Score=78.56 Aligned_cols=46 Identities=33% Similarity=0.899 Sum_probs=40.1
Q ss_pred cccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCcccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
+..|+||++.+.+++. ++|||. ||..|+..|+. ....||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVL-LPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEE-eCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 5689999999999886 999999 99999999998 6689999999875
No 16
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.76 E-value=4.7e-09 Score=103.77 Aligned_cols=70 Identities=24% Similarity=0.491 Sum_probs=56.7
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
+..+...+.|-||...|..|+. ++|||+||+.||..++. ....||+||..+.. .-++.+..+..+++.+.
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~-TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~es~~ 88 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCE-TTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINESHA 88 (391)
T ss_pred hhcchhHHHhhhhhheeeccee-cccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHHhhh
Confidence 3345567899999999999995 99999999999999998 55789999998776 33677777777665544
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.75 E-value=6.6e-09 Score=74.05 Aligned_cols=44 Identities=48% Similarity=1.124 Sum_probs=38.8
Q ss_pred cccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccc
Q 011864 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 108 ~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
.|+||++.+..++.+.+|||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999999988887677999999999999998656789999875
No 18
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.6e-09 Score=103.82 Aligned_cols=85 Identities=32% Similarity=0.677 Sum_probs=67.4
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc-------
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP------- 173 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p------- 173 (476)
..+.+.+.|+||++.|..|+ +++|||+||..||..++. ....||.||. ... .+.+|..+.+++..+..
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~~~~~~~~~~ 82 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--NLRPNVLLANLVERLRQLRLSRPL 82 (386)
T ss_pred hhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcC-CCcCCcccCC-chh--ccCccHHHHHHHHHHHhcCCcccc
Confidence 34567899999999999995 599999999999999998 6689999996 332 57788888888766542
Q ss_pred -----hhhhhHHHHHhccHHHH
Q 011864 174 -----DIDKYEEEELAFHEEER 190 (476)
Q Consensus 174 -----~c~~~ee~l~~fceeeq 190 (476)
.|..|.+.+.+||+.+.
T Consensus 83 ~~~~~~c~~~~~~~~~~c~~~~ 104 (386)
T KOG2177|consen 83 GSKEELCEKHGEELKLFCEEDE 104 (386)
T ss_pred cccchhhhhcCCcceEEecccc
Confidence 35666666777877765
No 19
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.73 E-value=6.6e-09 Score=102.10 Aligned_cols=49 Identities=41% Similarity=0.855 Sum_probs=40.6
Q ss_pred ccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+..|+||++.+..+ ..+++|+|.||..||..|+. ...+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 356899999987653 13478999999999999998 56899999998875
No 20
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.70 E-value=6.3e-09 Score=104.86 Aligned_cols=79 Identities=29% Similarity=0.690 Sum_probs=68.6
Q ss_pred ecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccC---CCCCCCcchHHHHHhhcc
Q 011864 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPNYDALISALYP 173 (476)
Q Consensus 97 ~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~---~~l~~n~~L~~li~~l~p 173 (476)
.+.+..+...+.|.+|..+|.++.+++.|.|+||..||..++.. ...||.|...+... ..++.+..|++++.+++|
T Consensus 6 ~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVP 84 (331)
T KOG2660|consen 6 RVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVP 84 (331)
T ss_pred hhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHcc
Confidence 34555677889999999999999999999999999999999995 78999999987664 367889999999999999
Q ss_pred hhh
Q 011864 174 DID 176 (476)
Q Consensus 174 ~c~ 176 (476)
...
T Consensus 85 gl~ 87 (331)
T KOG2660|consen 85 GLQ 87 (331)
T ss_pred hHH
Confidence 764
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.53 E-value=4.6e-08 Score=94.10 Aligned_cols=52 Identities=31% Similarity=0.750 Sum_probs=40.3
Q ss_pred ccccccccccccccccc--------eeecccCCccchhHHHhhhhcC-----CCCCCCccccccc
Q 011864 103 IRKDVQCPICLGIIKKT--------RTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCAS 154 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~P--------v~i~~CgH~FC~~CI~~~~~~~-----~~~CP~CR~~~~~ 154 (476)
...+..|+||++....+ -.+.+|+|.||..||..|.... ...||.||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 35578999999976432 1247899999999999999742 3469999998764
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=9.1e-08 Score=65.75 Aligned_cols=39 Identities=51% Similarity=1.201 Sum_probs=34.5
Q ss_pred ccccccccccceeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148 (476)
Q Consensus 109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~C 148 (476)
|+||++....++. ++|||.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~-~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVV-LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999888875 89999999999999998555789987
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.6e-08 Score=102.40 Aligned_cols=54 Identities=33% Similarity=0.671 Sum_probs=45.1
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcC----CCCCCCcccccccCCCCCCC
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG----NNECPACRTHCASRRSLRDD 161 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~----~~~CP~CR~~~~~~~~l~~n 161 (476)
+..||||+....-|+. +.|||.||..||..+|... ...||.|+..|.. +++.+.
T Consensus 186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~-kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL-KDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc-cceeee
Confidence 7899999999999996 7899999999999999743 3589999998887 334433
No 24
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=7.1e-07 Score=90.48 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=39.5
Q ss_pred cccccccccc-cccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGI-IKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~-~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+..||||... +.+|- .+.+|||.||..||..+|..+...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4589999983 45553 3347999999999999887677899999998876
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=1.1e-07 Score=69.47 Aligned_cols=36 Identities=33% Similarity=0.944 Sum_probs=22.3
Q ss_pred cccccccccc----ceeecccCCccchhHHHhhhhcC---CCCCC
Q 011864 109 CPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG---NNECP 146 (476)
Q Consensus 109 C~ICl~~~~~----Pv~i~~CgH~FC~~CI~~~~~~~---~~~CP 146 (476)
||||.+ |.+ |+. ++|||+||..||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~-L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMV-LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEE-EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 886 8899999999999999843 45676
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.5e-08 Score=93.88 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.5
Q ss_pred cccccccccccccccceeecccCCccchhHHHh-hhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDK-SMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~-~~~~~~~~CP~CR~~~~~ 154 (476)
..++.|+||++....|+. ++|||.||..||.. |-......||+||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 457899999999999997 99999999999999 666555569999997765
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.40 E-value=1.9e-07 Score=68.24 Aligned_cols=42 Identities=31% Similarity=0.825 Sum_probs=34.7
Q ss_pred ccccccccc--ccceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 108 QCPICLGII--KKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 108 ~C~ICl~~~--~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
.|+||...+ ..+..+++|||+||..||..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999998 3344569999999999999988 35678999984
No 28
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.40 E-value=2.2e-07 Score=75.41 Aligned_cols=41 Identities=34% Similarity=0.720 Sum_probs=33.1
Q ss_pred cccccccccc------------cceeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864 108 QCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRLGNNECPACR 149 (476)
Q Consensus 108 ~C~ICl~~~~------------~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR 149 (476)
.|+||+..|. -++.+.+|||.|+..||..|+. ...+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 4999999983 3345578999999999999998 456999997
No 29
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.8e-07 Score=103.24 Aligned_cols=62 Identities=24% Similarity=0.625 Sum_probs=52.5
Q ss_pred ecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCC
Q 011864 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD 160 (476)
Q Consensus 97 ~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~ 160 (476)
...+..+...+.||+|..-+.+.| |+.|||.||..||.+.+..+...||.|.++|.. .++.+
T Consensus 634 ~EElk~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga-nDv~~ 695 (698)
T KOG0978|consen 634 AEELKEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA-NDVHR 695 (698)
T ss_pred HHHHHHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc-ccccc
Confidence 345556788899999998888888 599999999999999999888899999999987 44443
No 30
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.4e-07 Score=91.26 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=41.3
Q ss_pred ccccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 107 VQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
..|+||++.|. +-+.++||.|.|+..||..|+......||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 48999999988 4567799999999999999999665679999986654
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.1e-06 Score=87.80 Aligned_cols=49 Identities=37% Similarity=0.752 Sum_probs=41.9
Q ss_pred cccccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...|.||+.-|. +-+.++||.|.|+..|+.+|+..-...||+||+++..
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 478999999776 3466799999999999999998667899999998763
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.1e-06 Score=83.16 Aligned_cols=47 Identities=30% Similarity=0.686 Sum_probs=42.7
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
-.|+||+....-||. ++|+|.||+-||.-........||+||.+|.+
T Consensus 8 ~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 469999999999985 99999999999998887677889999999986
No 33
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-05 Score=82.80 Aligned_cols=47 Identities=23% Similarity=0.676 Sum_probs=39.2
Q ss_pred cccccccccccc-cc------------ceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 105 KDVQCPICLGII-KK------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 105 e~l~C~ICl~~~-~~------------Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
.+..|.||++-+ .. |.. +||||.|+..|+..|+. +..+||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccc-ccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 466899999974 33 355 89999999999999999 7799999999854
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.79 E-value=1.2e-05 Score=62.38 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=31.4
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhh-cCCCCCCC
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPA 147 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~ 147 (476)
..+.|||.+..|.+||....|+|+|....|..|+. .+...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46899999999999998789999999999999994 34568998
No 35
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.78 E-value=1.4e-05 Score=84.33 Aligned_cols=69 Identities=25% Similarity=0.653 Sum_probs=55.1
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 171 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l 171 (476)
.+.+.+.|++|..++.+|+..+.|||.||..|+..|+.. ...||.|+........+.........+..+
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 367789999999999999974599999999999999985 689999999887755555444455555444
No 36
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.6e-06 Score=89.42 Aligned_cols=47 Identities=30% Similarity=0.676 Sum_probs=40.7
Q ss_pred ccccccccccccc-----ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKK-----TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~-----Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...|+||.+.+.. |. .++|+|.||..|+..|+. ...+||.||..+..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~-rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPK-RLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYD 342 (543)
T ss_pred CCeeeeechhhccccccccc-eeecccchHHHHHHHHHH-HhCcCCcchhhhhc
Confidence 6689999999998 55 499999999999999999 56899999995443
No 37
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.2e-05 Score=84.63 Aligned_cols=50 Identities=34% Similarity=0.840 Sum_probs=45.0
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+..++.|.||+.++..||+ +||||+||..||.+.+. ....||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 4678999999999999998 79999999999999887 56899999998875
No 38
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.75 E-value=1.3e-05 Score=75.91 Aligned_cols=59 Identities=20% Similarity=0.470 Sum_probs=45.6
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHH
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI 168 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (476)
.+.|.||...|..||. +.|||.||..|..+-+. ....|-+|.+.... .+.+...|+.++
T Consensus 196 PF~C~iCKkdy~spvv-t~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G--~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVV-TECGHSFCSLCAIRKYQ-KGDECGVCGKATYG--RFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhh-hhcchhHHHHHHHHHhc-cCCcceecchhhcc--ceeHHhhHHHHH
Confidence 5899999999999996 99999999999988777 44789999886543 233444444443
No 39
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.7e-05 Score=78.54 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=42.2
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhh-cCCCCCCCcccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTHCA 153 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~CR~~~~ 153 (476)
....||+|......|.++.+|+|.||+.||...+. ...++||.|...+.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 46689999999999998888999999999988665 34579999998775
No 40
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.71 E-value=2.6e-05 Score=64.90 Aligned_cols=48 Identities=29% Similarity=0.537 Sum_probs=36.7
Q ss_pred cccccccccccc------------cceeecccCCccchhHHHhhhhc--CCCCCCCcccccc
Q 011864 106 DVQCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~------------~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~ 153 (476)
+..|.||...|. -|+.+-.|+|.|+..||.+|+.. ....||.||.++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456777766654 24445679999999999999984 3579999999765
No 41
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.57 E-value=4.5e-05 Score=76.27 Aligned_cols=44 Identities=30% Similarity=0.861 Sum_probs=39.9
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
+.||+|..++.+|+.+..|+|.||..||...+-...+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 89999999999999855899999999999988767799999965
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=5.3e-05 Score=57.66 Aligned_cols=46 Identities=24% Similarity=0.505 Sum_probs=40.2
Q ss_pred ccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCcccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
..|.||++...+.|. .-||| -.|+.|-.+.++.....||.||+++.
T Consensus 8 dECTICye~pvdsVl-YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVL-YTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHH-HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 469999999999984 88999 56999999988866789999999875
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=8.9e-05 Score=74.26 Aligned_cols=47 Identities=23% Similarity=0.581 Sum_probs=41.3
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+.|-||...|..||. +.|+|+||..|...-+. ....|++|...+..
T Consensus 241 Pf~c~icr~~f~~pVv-t~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVV-TKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccchh-hcCCceeehhhhccccc-cCCcceeccccccc
Confidence 4679999999999997 99999999999988887 45789999986654
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.30 E-value=9.6e-05 Score=77.59 Aligned_cols=48 Identities=27% Similarity=0.661 Sum_probs=39.4
Q ss_pred ccccccccccccccccce---eecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 103 IRKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
+.+.-+||||++.+...+ ..+.|.|+|...|+..|+. .+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 455679999999887654 4478999999999999986 78999997443
No 45
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.14 E-value=0.00025 Score=74.14 Aligned_cols=34 Identities=21% Similarity=0.821 Sum_probs=30.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhh
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~ 138 (476)
++++.||||...|.+|+. ++|+|..|..|....+
T Consensus 2 eeelkc~vc~~f~~epii-l~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPII-LPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceE-eecccHHHHHHHHhhc
Confidence 568999999999999995 9999999999987665
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.06 E-value=0.00019 Score=80.83 Aligned_cols=50 Identities=22% Similarity=0.669 Sum_probs=39.1
Q ss_pred cccccccccccccc-----cc-eeecccCCccchhHHHhhhhc-CCCCCCCcccccc
Q 011864 104 RKDVQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~ 153 (476)
...-.|+||..++. -| .++..|.|.|+..|+.+|++. ++.+||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44557999999876 12 334669999999999999983 5679999997665
No 47
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.0028 Score=62.22 Aligned_cols=44 Identities=25% Similarity=0.707 Sum_probs=33.2
Q ss_pred ccccccccc-ccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 108 QCPICLGII-KKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~~~-~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.|-.|.... ..|..++.|+|+||..|...... ..||.|+.++..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeee
Confidence 466666532 57778899999999999865432 389999998654
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00038 Score=72.13 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=39.3
Q ss_pred cccccccccccccccce------ee-cccCCccchhHHHhhhhcC------CCCCCCcccccc
Q 011864 104 RKDVQCPICLGIIKKTR------TV-MECLHRFCRECIDKSMRLG------NNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv------~i-~~CgH~FC~~CI~~~~~~~------~~~CP~CR~~~~ 153 (476)
..+..|.||++.+..++ .| .+|.|.||..||..|-... ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 44789999999887665 12 5699999999999998532 468999998654
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00044 Score=73.38 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=38.9
Q ss_pred cccccccccccccc-----cc-----------eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 104 RKDVQCPICLGIIK-----KT-----------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~~-----~P-----------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
+....|+||+..+. .| .+++||.|.|+..|+..|+....-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 44567999998653 11 3347999999999999999854458999999775
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.86 E-value=0.00025 Score=78.63 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=40.4
Q ss_pred cccccccccccccccceee--cccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i--~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.....||+|+..+.+-... .+|+|.||..||..|.. ...+||+||..|..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 3466899999877754322 56999999999999998 56899999998765
No 51
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00074 Score=69.16 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=41.9
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
++..||||.--..+.|+ .||+|.-|+.||.+.+. +.+.|-.|++.+.
T Consensus 421 Ed~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVF-APCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhc-cCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 46789999999999997 99999999999999998 6689999998665
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0021 Score=67.13 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=39.1
Q ss_pred cccccccccccccc----eeecccCCccchhHHHhhhhc-CCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKT----RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~P----v~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~~ 154 (476)
..+||||++-+.-| +.++.|||.|-..||..|+.. ....||.|......
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 46899999988866 234789999999999999962 23589999886554
No 53
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.00062 Score=67.52 Aligned_cols=50 Identities=28% Similarity=0.613 Sum_probs=40.0
Q ss_pred cccccccccccccc----------ceeecccCCccchhHHHhhhhcC-CCCCCCcccccccC
Q 011864 105 KDVQCPICLGIIKK----------TRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCASR 155 (476)
Q Consensus 105 e~l~C~ICl~~~~~----------Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~~ 155 (476)
++..|+||..-+.. ... +.|+|.|+..||.-|.-.+ ..+||.|+..+...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~-LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYK-LSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhhee-eecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 46689999886653 344 8899999999999998744 56999999988763
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.46 E-value=0.0011 Score=70.93 Aligned_cols=49 Identities=29% Similarity=0.712 Sum_probs=41.3
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhc----CCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL----GNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~----~~~~CP~CR~~~~~ 154 (476)
....|.+|.+.-.+++. ..|.|.||..||..++.. .+-+||.|-..++.
T Consensus 535 ~~~~C~lc~d~aed~i~-s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIE-SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhhHh-hhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 45689999999999996 999999999999888752 33589999987764
No 55
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.41 E-value=0.00099 Score=53.68 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=23.9
Q ss_pred cccccccccccc----cceee---cccCCccchhHHHhhhhc--C--------CCCCCCccccccc
Q 011864 106 DVQCPICLGIIK----KTRTV---MECLHRFCRECIDKSMRL--G--------NNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~----~Pv~i---~~CgH~FC~~CI~~~~~~--~--------~~~CP~CR~~~~~ 154 (476)
+..|+||+..+. .|+.+ ..|++.|+..||..||.. . .+.||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998755 23322 269999999999999962 1 1369999998764
No 56
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0038 Score=64.83 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=34.7
Q ss_pred ccccccccccccc--e-eecccCCccchhHHHhhhhcCC--CCCCCccccccc
Q 011864 107 VQCPICLGIIKKT--R-TVMECLHRFCRECIDKSMRLGN--NECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~~P--v-~i~~CgH~FC~~CI~~~~~~~~--~~CP~CR~~~~~ 154 (476)
..|.||.+.+-.- + .+-.|||+|+..|+..||...+ ..||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4699997665432 1 1134999999999999998543 489999954444
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.23 E-value=0.0019 Score=67.18 Aligned_cols=50 Identities=24% Similarity=0.593 Sum_probs=39.8
Q ss_pred cccccccccccceeecccCCccchhHHHhhhhc-CCCCCCCcccccccCCCC
Q 011864 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCASRRSL 158 (476)
Q Consensus 108 ~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~~~~~l 158 (476)
.|-||-+--++-. |-||||..|..|+..|-.. ....||.||..+..+..+
T Consensus 371 LCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 371 LCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 5889988766644 5899999999999999853 357999999988764433
No 58
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0025 Score=65.66 Aligned_cols=47 Identities=30% Similarity=0.704 Sum_probs=38.9
Q ss_pred cccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...|-||+.-.++.+. +||-| -.|..|.....- ..+.||.||.++..
T Consensus 290 gkeCVIClse~rdt~v-LPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVV-LPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEE-ecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 4579999999999985 99999 569999877553 45789999998865
No 59
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.01 E-value=0.0051 Score=50.53 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=28.3
Q ss_pred eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 120 RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 120 v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+..--|.|.|+..||.+|+. ..+.||+|++.+..
T Consensus 49 v~wG~CnHaFH~HCI~rWL~-Tk~~CPld~q~w~~ 82 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLD-TKGVCPLDRQTWVL 82 (88)
T ss_pred EEEEecchHHHHHHHHHHHh-hCCCCCCCCceeEE
Confidence 43345999999999999999 46899999997654
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.90 E-value=0.0058 Score=61.18 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=43.5
Q ss_pred cccccccccccccc---cceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCC
Q 011864 104 RKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD 161 (476)
Q Consensus 104 ~e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n 161 (476)
...+.|||+...|. .-|.+.+|||.|+..+|...- ....||+|..+|.....+..|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 55789999999885 346667999999999999873 346799999999874444333
No 61
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0067 Score=60.97 Aligned_cols=47 Identities=32% Similarity=0.806 Sum_probs=38.7
Q ss_pred ccccccc-ccccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 108 QCPICLG-IIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~-~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.||+|.. .+.+|- .+-+|+|..|.+|+...+..+...||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5999985 666772 3358999999999999999888999999886654
No 62
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.70 E-value=0.009 Score=44.83 Aligned_cols=41 Identities=24% Similarity=0.589 Sum_probs=31.4
Q ss_pred ccccccc--ccccceeecccC-----CccchhHHHhhhhcC-CCCCCCcc
Q 011864 108 QCPICLG--IIKKTRTVMECL-----HRFCRECIDKSMRLG-NNECPACR 149 (476)
Q Consensus 108 ~C~ICl~--~~~~Pv~i~~Cg-----H~FC~~CI~~~~~~~-~~~CP~CR 149 (476)
.|.||++ .-.+|. +.||. |.|+..|+.+|+... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 334555 48885 789999999999743 46899994
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.011 Score=58.23 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=43.0
Q ss_pred cccccccccccccccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...+.||||.+.+.+.+ .+-+|||.||..|+.+++. ....||+|-.++..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 35789999999999764 3478999999999999988 56899999998876
No 64
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.0039 Score=62.62 Aligned_cols=42 Identities=33% Similarity=0.761 Sum_probs=35.1
Q ss_pred cccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCcccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
...|.||++...+-++ ++||| .-|..|-.+ .+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEE-eecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6789999999999997 99999 459999643 358999998654
No 65
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.10 E-value=0.022 Score=55.93 Aligned_cols=49 Identities=29% Similarity=0.810 Sum_probs=37.7
Q ss_pred ccccccccc-ccccce---eecc-cCCccchhHHHhhhhcCCCCCC--Cccccccc
Q 011864 106 DVQCPICLG-IIKKTR---TVME-CLHRFCRECIDKSMRLGNNECP--ACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~-~~~~Pv---~i~~-CgH~FC~~CI~~~~~~~~~~CP--~CR~~~~~ 154 (476)
+-.||||.. .+-+|- .+-| |-|..|.+|+.+.|..+...|| -|.+.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 447999985 555662 1233 9999999999999998889999 78775543
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.011 Score=61.07 Aligned_cols=45 Identities=29% Similarity=0.560 Sum_probs=35.2
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
....|.||++-.++.+. +||||..| |..-.. ....||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~~~f-vpcGh~cc--ct~cs~--~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVF-VPCGHVCC--CTLCSK--HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccceee-ecCCcEEE--chHHHh--hCCCCchhHHHHHH
Confidence 35679999999999887 99999877 665433 34569999987754
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.00 E-value=0.019 Score=42.97 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=22.3
Q ss_pred ccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864 109 CPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (476)
Q Consensus 109 C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~ 152 (476)
||+|.+.+... +.--+||+.+|..|....+....+.||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877321 111358999999999998875678999999864
No 68
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.0063 Score=49.62 Aligned_cols=31 Identities=35% Similarity=0.749 Sum_probs=25.9
Q ss_pred cccCCccchhHHHhhhhc--CCCCCCCcccccc
Q 011864 123 MECLHRFCRECIDKSMRL--GNNECPACRTHCA 153 (476)
Q Consensus 123 ~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~ 153 (476)
--|.|.|...||.+|+.. +...||.||..+.
T Consensus 49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 459999999999999973 3458999998764
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.014 Score=59.62 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=40.1
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~ 152 (476)
.+...||||+....+|..+.--|-.||+.||..++. ..+.||+-..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence 456789999999999987666799999999999998 668999765443
No 70
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.87 E-value=0.021 Score=51.35 Aligned_cols=58 Identities=26% Similarity=0.478 Sum_probs=46.1
Q ss_pred ceecccccccccccccccccccccceeecc---cCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864 95 FVFVELPEIRKDVQCPICLGIIKKTRTVME---CLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (476)
Q Consensus 95 ~~~~~~~~l~e~l~C~ICl~~~~~Pv~i~~---CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~ 154 (476)
++.++.+. ..+.|-||.+...+..++-| ||-..|..|....|+. -...||+|++.|.+
T Consensus 71 vmnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 71 VMNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred HheeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 34555555 57899999999887776443 9999999999999983 24689999998876
No 71
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.021 Score=57.85 Aligned_cols=63 Identities=25% Similarity=0.513 Sum_probs=47.1
Q ss_pred ccccccccccc------cceeecccCCccchhHHHhhhhcCCCCCCCccccc--cc--CCCCCCCcchHHHHHh
Q 011864 107 VQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC--AS--RRSLRDDPNYDALISA 170 (476)
Q Consensus 107 l~C~ICl~~~~------~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~--~~--~~~l~~n~~L~~li~~ 170 (476)
+.|-||-..|. .|.. +.|||+||..|+...+......||.||.+. .. ...+..|+.+..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~-l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~ 76 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRV-LKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEH 76 (296)
T ss_pred CceeecCccccccCcccCCcc-cccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence 57999988775 4553 789999999999998886677899999973 22 1255667777666644
No 72
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.53 E-value=0.015 Score=65.64 Aligned_cols=46 Identities=35% Similarity=0.800 Sum_probs=38.0
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhhcC-CCCCCCccccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~ 154 (476)
+.|+||++ ...++ ++.|+|.||..|+...+... ...||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 55666 59999999999999988743 3469999987655
No 73
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.02 Score=49.23 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=33.7
Q ss_pred cccccccccccccc----------------eeecccCCccchhHHHhhhhcCCCCCCCcccc
Q 011864 106 DVQCPICLGIIKKT----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 106 ~l~C~ICl~~~~~P----------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
--.|+||..-+-++ |.--.|.|.|+..||.+|++ ..+.||+|.+.
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk-tr~vCPLdn~e 106 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLK-TRNVCPLDNKE 106 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHh-hcCcCCCcCcc
Confidence 45799987654321 22235999999999999999 55899999874
No 74
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.33 E-value=0.018 Score=60.02 Aligned_cols=49 Identities=27% Similarity=0.669 Sum_probs=38.3
Q ss_pred ccccccccccccc-cc--eeecccCCccchhHHHhhhhc-CCCCCCCcccccc
Q 011864 105 KDVQCPICLGIIK-KT--RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA 153 (476)
Q Consensus 105 e~l~C~ICl~~~~-~P--v~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~ 153 (476)
-.+.|-.|.+.+- .| ...+||.|+|+..|+..++.. +..+||.||+-.+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4688999998764 22 344899999999999999863 4569999996444
No 75
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.15 E-value=0.029 Score=57.38 Aligned_cols=65 Identities=20% Similarity=0.397 Sum_probs=47.4
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c 175 (476)
.-+-+.||||...+..|++--+=||..|..|-.+ ..+.||.||.++.. .....+..+++.....|
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~----~R~~amEkV~e~~~vpC 109 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN----IRCRAMEKVAEAVLVPC 109 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc----HHHHHHHHHHHhceecc
Confidence 3456889999999999985334479999999754 34789999998875 24556666666655433
No 76
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.82 E-value=0.038 Score=42.44 Aligned_cols=46 Identities=26% Similarity=0.555 Sum_probs=35.5
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
....|-.|...-...+. ++|||..|..|..-+ +.+-||.|.++|..
T Consensus 6 ~~~~~~~~~~~~~~~~~-~pCgH~I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTV-LPCGHLICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccccccc-ccccceeeccccChh---hccCCCCCCCcccC
Confidence 34567788877666665 999999999997543 44779999998864
No 77
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.44 E-value=0.02 Score=57.79 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=38.5
Q ss_pred ccccccccccccc-cc-eeecccCCccchhHHHhhhhc----------------------CCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIK-KT-RTVMECLHRFCRECIDKSMRL----------------------GNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~-~P-v~i~~CgH~FC~~CI~~~~~~----------------------~~~~CP~CR~~~~~ 154 (476)
....|.||+.-|. .| .+.++|.|.|+..|+.+++.. ....||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3568999998776 34 566899999999999988731 11369999987754
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.89 E-value=0.054 Score=55.62 Aligned_cols=47 Identities=28% Similarity=0.633 Sum_probs=34.3
Q ss_pred cccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 108 QCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.||+|++.+... .+--+||-..|..|....-..-++.||.||..+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 499999876522 22246898889999876655445799999987765
No 79
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.55 E-value=0.088 Score=39.66 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=25.4
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhh----cCCCCCCCcccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTH 151 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~ 151 (476)
.+.|||....+..|+....|.|.-|.+ +..|+. .+...||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 468999999999999989999998876 344543 244689999763
No 80
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=0.25 Score=56.20 Aligned_cols=41 Identities=22% Similarity=0.660 Sum_probs=35.8
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
.-.|.+|...+.-|+.-..|||.|+..|+. .+...||.|+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 358999999999997669999999999997 35678999986
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.00 E-value=0.1 Score=53.82 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=36.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhh-cCCCCCCCcccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTH 151 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~CR~~ 151 (476)
++...|.||-.-+.-... +||+|..|-.|..+.-. .....||.||+.
T Consensus 59 Een~~C~ICA~~~TYs~~-~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSAR-YPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEe-ccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 446789999998776554 99999999999876433 245789999974
No 82
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.83 E-value=0.051 Score=60.77 Aligned_cols=67 Identities=31% Similarity=0.761 Sum_probs=50.0
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCcccccccCCCCCCCcchHHHHH
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCASRRSLRDDPNYDALIS 169 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~~~~l~~n~~L~~li~ 169 (476)
..+...+.|+||...+..|+. +.|.|.||..|+...|.. +...||+|+..+.. +..+..+....++.
T Consensus 16 ~~~~k~lEc~ic~~~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK-~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK-RSLRESPRFSQLSK 84 (684)
T ss_pred HHHhhhccCCceeEEeeccch-hhhhHHHHhhhhhceeeccCccccchhhhhhhhh-hhccccchHHHHHH
Confidence 345668899999999999975 999999999999876652 34689999977665 44444444444443
No 83
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.084 Score=53.70 Aligned_cols=46 Identities=26% Similarity=0.558 Sum_probs=32.0
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-+|.-|--.+..--.+++|.|.||..|...- ..+.||.|-..+..
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHHHH
Confidence 34677786654433334899999999997542 34789999876543
No 84
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.087 Score=58.08 Aligned_cols=40 Identities=25% Similarity=0.697 Sum_probs=33.3
Q ss_pred ccccccccccccccc----cceeecccCCccchhHHHhhhhcCCCCCC
Q 011864 103 IRKDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECP 146 (476)
Q Consensus 103 l~e~l~C~ICl~~~~----~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP 146 (476)
+..-+.|+||+..|. .||. +-|||+.|..|+..... .+||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhh---ccCC
Confidence 455688999998876 6887 88999999999988765 5677
No 85
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.15 Score=53.76 Aligned_cols=47 Identities=23% Similarity=0.624 Sum_probs=34.8
Q ss_pred cccccccccccccccc--eeecccCCccchhHHHhhhhc----C---CCCCCCccc
Q 011864 104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRL----G---NNECPACRT 150 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~----~---~~~CP~CR~ 150 (476)
...+.|.||++...-. +..+||+|.||..|+..++.. + .-.||.|.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3467899999977643 334899999999999999862 2 236887654
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.89 E-value=0.098 Score=44.37 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=25.6
Q ss_pred cccccccccccccccc-eeecccCCccchhHHH
Q 011864 104 RKDVQCPICLGIIKKT-RTVMECLHRFCRECID 135 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P-v~i~~CgH~FC~~CI~ 135 (476)
...-.|++|...+.++ ..+.||||.|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3456799999987754 4558999999999975
No 87
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.22 E-value=0.069 Score=62.98 Aligned_cols=51 Identities=24% Similarity=0.650 Sum_probs=42.1
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
.+.....|+||++++.+--.++.|||.||..|+..|+. ....||.|...+-
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 34556799999999996665689999999999999998 4578999985443
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.94 E-value=0.28 Score=35.77 Aligned_cols=40 Identities=30% Similarity=0.810 Sum_probs=24.9
Q ss_pred ccccccccccceeec--ccCCccchhHHHhhhhcCCC-CCCCc
Q 011864 109 CPICLGIIKKTRTVM--ECLHRFCRECIDKSMRLGNN-ECPAC 148 (476)
Q Consensus 109 C~ICl~~~~~Pv~i~--~CgH~FC~~CI~~~~~~~~~-~CP~C 148 (476)
|.+|.++...-+... .|+-.++..|+..+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778999988887654 59989999999999985433 69988
No 89
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.33 Score=47.49 Aligned_cols=48 Identities=21% Similarity=0.581 Sum_probs=36.8
Q ss_pred cccccccccccc--cceeecccCCccchhHHHhhhhcC-------CCCCCCccccccc
Q 011864 106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLG-------NNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~-------~~~CP~CR~~~~~ 154 (476)
.-.|.+|...+. +.+. +-|.|.|+..|+..|...- ...||.|...|..
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 346999998876 4455 8899999999999997631 1379999886643
No 90
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=0.26 Score=51.76 Aligned_cols=49 Identities=16% Similarity=0.470 Sum_probs=38.3
Q ss_pred ccccccccccccccc--cceeecccCCccchhHHHhhhhcCC--CCCCCcccc
Q 011864 103 IRKDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGN--NECPACRTH 151 (476)
Q Consensus 103 l~e~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~--~~CP~CR~~ 151 (476)
+...+.|||=.+.-. +|-+.+.|||..|..-|.+..+.+. +.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 566789998766443 4433499999999999999998776 789999653
No 91
>PHA03096 p28-like protein; Provisional
Probab=88.68 E-value=0.23 Score=50.57 Aligned_cols=44 Identities=34% Similarity=0.418 Sum_probs=30.3
Q ss_pred ccccccccccc-cce------eecccCCccchhHHHhhhhcC--CCCCCCccc
Q 011864 107 VQCPICLGIIK-KTR------TVMECLHRFCRECIDKSMRLG--NNECPACRT 150 (476)
Q Consensus 107 l~C~ICl~~~~-~Pv------~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~ 150 (476)
-.|.||++... .++ .+..|.|.||..||..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 36999998654 221 135799999999999998742 235555554
No 92
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=0.53 Score=46.71 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=31.0
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhh
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR 139 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~ 139 (476)
+..--.|++|+..+.+||. ++=||.||+.||..++-
T Consensus 40 iK~FdcCsLtLqPc~dPvi-t~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVI-TPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCcc-CCCCeeeeHHHHHHHHH
Confidence 4444579999999999995 99999999999998765
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.09 E-value=2.1 Score=41.64 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=31.0
Q ss_pred ccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCccccccc
Q 011864 109 CPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 109 C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
|-+|...-.. |.++||.| .+|..|-.. ...||.|+.+...
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 9999887666 55699998 789999543 4579999986654
No 94
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.90 E-value=0.38 Score=48.56 Aligned_cols=35 Identities=26% Similarity=0.734 Sum_probs=30.1
Q ss_pred ccccccccccccccceeeccc----CCccchhHHHhhhhc
Q 011864 105 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL 140 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~C----gH~FC~~CI~~~~~~ 140 (476)
..+.|.+|.+.|.+..+ ..| .|.||+.|-...++.
T Consensus 267 apLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCce-eecCCCcccceecccCHHHHHh
Confidence 45899999999999986 566 599999999998873
No 95
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.30 E-value=0.88 Score=42.37 Aligned_cols=33 Identities=27% Similarity=0.698 Sum_probs=23.0
Q ss_pred cccccccccccccceeeccc------------CCcc-chhHHHhhhh
Q 011864 106 DVQCPICLGIIKKTRTVMEC------------LHRF-CRECIDKSMR 139 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~C------------gH~F-C~~CI~~~~~ 139 (476)
+..||||++...+.|. +-| +-.| ...|+.++-+
T Consensus 2 d~~CpICme~PHNAVL-LlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVL-LLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEE-EEeccccCCccccccCCccchhHHHHHHHH
Confidence 5689999999999986 433 3222 4678877653
No 96
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.55 E-value=0.7 Score=34.56 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=24.3
Q ss_pred cccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCccccccc
Q 011864 108 QCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.|--|.-.... ++.|. |..|..|+..++. .+..||.|..+++.
T Consensus 4 nCKsCWf~~k~---Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG---LIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS---EEE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred cChhhhhcCCC---eeeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 45555443333 35577 8889999999988 66899999987764
No 97
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.61 E-value=0.5 Score=42.83 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=27.5
Q ss_pred ccccccccccccc--ceeecccC------CccchhHHHhhhh
Q 011864 106 DVQCPICLGIIKK--TRTVMECL------HRFCRECIDKSMR 139 (476)
Q Consensus 106 ~l~C~ICl~~~~~--Pv~i~~Cg------H~FC~~CI~~~~~ 139 (476)
...|.||++.+.+ -|..+.|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6789999998877 56556676 6799999999954
No 98
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=81.40 E-value=0.87 Score=52.04 Aligned_cols=50 Identities=32% Similarity=0.654 Sum_probs=37.8
Q ss_pred cccccccccccccc--cce-eecccCCccchhHHHhhhhc------CCCCCCCcccccc
Q 011864 104 RKDVQCPICLGIIK--KTR-TVMECLHRFCRECIDKSMRL------GNNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~~--~Pv-~i~~CgH~FC~~CI~~~~~~------~~~~CP~CR~~~~ 153 (476)
...+.|.||.+.+. .|+ ....|.|+|...||..|... ....||.|..+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34688999999876 343 33568999999999999863 2358999995443
No 99
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.22 E-value=1.2 Score=36.60 Aligned_cols=49 Identities=29% Similarity=0.672 Sum_probs=22.6
Q ss_pred cccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-.|.||.+.+- ++ |.+..|+-..|+.|..--.+.++..||.|++.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 457999998653 22 33456888899999987777788999999987764
No 100
>PHA02862 5L protein; Provisional
Probab=80.61 E-value=1.2 Score=40.89 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=34.6
Q ss_pred ccccccccccccceeecccCC-----ccchhHHHhhhhc-CCCCCCCccccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH-----~FC~~CI~~~~~~-~~~~CP~CR~~~~~ 154 (476)
-.|-||.+.-...+ .||.. ..+..|+.+|+.. +...||.|+.++..
T Consensus 3 diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36999998765443 46553 4589999999983 44689999998765
No 101
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=80.56 E-value=1.3 Score=53.16 Aligned_cols=50 Identities=22% Similarity=0.542 Sum_probs=34.8
Q ss_pred ccccccccccc--cccceeecccCCccchhHHHhhhhcC---C------CCCCCccccccc
Q 011864 105 KDVQCPICLGI--IKKTRTVMECLHRFCRECIDKSMRLG---N------NECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~--~~~Pv~i~~CgH~FC~~CI~~~~~~~---~------~~CP~CR~~~~~ 154 (476)
.+..|-||..- -..|..-+.|+|.|+..|....+..+ . -.||.|..++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45678888752 23454348999999999998776521 1 279999886653
No 102
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=1.2 Score=42.16 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=36.1
Q ss_pred cccccccccccccccccc---cee---ecccCCccchhHHHhhhhc-----C-----CCCCCCccccccc
Q 011864 101 PEIRKDVQCPICLGIIKK---TRT---VMECLHRFCRECIDKSMRL-----G-----NNECPACRTHCAS 154 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~---Pv~---i~~CgH~FC~~CI~~~~~~-----~-----~~~CP~CR~~~~~ 154 (476)
+.-.....|.||..+-.+ |-. -+.||..|+.-|+..|+.. . -..||.|..+++.
T Consensus 160 ekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 160 EKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred CcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 333445567777654322 111 1469999999999999972 1 1379999998875
No 103
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=79.10 E-value=1.9 Score=40.21 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=34.7
Q ss_pred cccccccccccccceeecccCC-----ccchhHHHhhhhc-CCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH-----~FC~~CI~~~~~~-~~~~CP~CR~~~~~ 154 (476)
.-.|-||.+-.. +.. .||.. ..+..|+.+|+.. +...|+.|.+++..
T Consensus 8 ~~~CRIC~~~~~-~~~-~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVT-NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-Ccc-CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 457999998754 222 56654 3499999999984 45689999998765
No 104
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=78.35 E-value=1.9 Score=32.85 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=20.9
Q ss_pred ccccccccccc---------eeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864 109 CPICLGIIKKT---------RTVMECLHRFCRECIDKSMRLGNNECPACR 149 (476)
Q Consensus 109 C~ICl~~~~~P---------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR 149 (476)
|--|+..|..+ +....|++.||..|= -++......||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 44555555543 344679999999993 33344556899884
No 105
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=76.53 E-value=1.4 Score=44.63 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=34.8
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
...||||...+. ..+..++|||.....|+......+ -+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 455999998654 223348999999999999888766 89999987
No 106
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.80 E-value=1.7 Score=45.77 Aligned_cols=30 Identities=33% Similarity=0.844 Sum_probs=22.8
Q ss_pred cCCccchhHHHhhhhc------------CCCCCCCccccccc
Q 011864 125 CLHRFCRECIDKSMRL------------GNNECPACRTHCAS 154 (476)
Q Consensus 125 CgH~FC~~CI~~~~~~------------~~~~CP~CR~~~~~ 154 (476)
|-...|..|+-+||.. +...||.||+.|-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4456699999999952 23479999998764
No 107
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.50 E-value=1.4 Score=50.73 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=30.0
Q ss_pred ccccccccccccc-cccceeecccCCccchhHHHhhhh
Q 011864 103 IRKDVQCPICLGI-IKKTRTVMECLHRFCRECIDKSMR 139 (476)
Q Consensus 103 l~e~l~C~ICl~~-~~~Pv~i~~CgH~FC~~CI~~~~~ 139 (476)
++..-.|.+|... +..|..+.+|||.|+..||.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4456689999974 457877899999999999988763
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.96 E-value=1.5 Score=46.53 Aligned_cols=41 Identities=37% Similarity=0.669 Sum_probs=30.6
Q ss_pred cccccccccccc-----cceeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864 106 DVQCPICLGIIK-----KTRTVMECLHRFCRECIDKSMRLGNNECPAC 148 (476)
Q Consensus 106 ~l~C~ICl~~~~-----~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~C 148 (476)
-..||+|...+. +-+++. |||-||+.|...|.. ++..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh-CCccccCc
Confidence 457999988765 456656 999999999999877 44556443
No 109
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=74.15 E-value=2.3 Score=31.51 Aligned_cols=39 Identities=31% Similarity=0.751 Sum_probs=23.8
Q ss_pred cccccccccc--ceeecccCC-----ccchhHHHhhhhc-CCCCCCCc
Q 011864 109 CPICLGIIKK--TRTVMECLH-----RFCRECIDKSMRL-GNNECPAC 148 (476)
Q Consensus 109 C~ICl~~~~~--Pv~i~~CgH-----~FC~~CI~~~~~~-~~~~CP~C 148 (476)
|-||++.-.. |. +.||.- ..+..|+..|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688775442 34 367653 4589999999983 45679887
No 110
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=73.75 E-value=3.2 Score=36.13 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=53.3
Q ss_pred EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011864 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 451 (476)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (476)
|+|++-......+|.|.+.-.--..++||-++.. +.+.+++- ||+--+. . .+....|
T Consensus 17 IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~a-lfl~Vn~---~--------------lp~~s~t 78 (104)
T PF02991_consen 17 IPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQA-LFLFVNN---T--------------LPSTSST 78 (104)
T ss_dssp EEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS--EEEEBTT---B--------------ESSTTSB
T ss_pred cEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCce-EEEEEcC---c--------------ccchhhH
Confidence 8888889998889999999666899999999988 66666542 3332211 1 1124579
Q ss_pred cccccccccCCCCcchhhhhh
Q 011864 452 LAGLRVNHTSNTDHLILAYRQ 472 (476)
Q Consensus 452 l~~l~~~~~~~~~~l~~~y~~ 472 (476)
|++|+..+-+-.|-|+|.|.-
T Consensus 79 m~elY~~~kdeDGFLY~~Ys~ 99 (104)
T PF02991_consen 79 MGELYEKYKDEDGFLYMTYSS 99 (104)
T ss_dssp HHHHHHHHB-TTSSEEEEEES
T ss_pred HHHHHHHhCCCCCeEEEEecc
Confidence 999999999999999999964
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.44 E-value=1.7 Score=46.18 Aligned_cols=34 Identities=29% Similarity=0.869 Sum_probs=24.9
Q ss_pred cccccccccccccc-e--eecccCCccchhHHHhhhh
Q 011864 106 DVQCPICLGIIKKT-R--TVMECLHRFCRECIDKSMR 139 (476)
Q Consensus 106 ~l~C~ICl~~~~~P-v--~i~~CgH~FC~~CI~~~~~ 139 (476)
...|.||..-...+ . .+..|+|.||..|+..++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 56899999333222 1 1267999999999999887
No 112
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=72.67 E-value=3.9 Score=36.06 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=29.1
Q ss_pred cccccccccccc----cceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~----~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
.-.|.+|...|. ....+..|.|.+|..|-...-......|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 347999987542 345668899999999975522223346888865
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.49 E-value=3.1 Score=47.37 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=31.9
Q ss_pred cccccccccccccce---eec---ccCCccchhHHHhhhhc-----CCCCCCCcccccc
Q 011864 106 DVQCPICLGIIKKTR---TVM---ECLHRFCRECIDKSMRL-----GNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv---~i~---~CgH~FC~~CI~~~~~~-----~~~~CP~CR~~~~ 153 (476)
..+|.||..-+.+|+ -+. .|+|.||..||..|... ....|++|..-|-
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 346677766665532 123 39999999999999862 2246788876443
No 114
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.29 E-value=3.9 Score=40.86 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=39.7
Q ss_pred cccccccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCc
Q 011864 104 RKDVQCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~ 162 (476)
...+.|||-.-.|..- +.+.+|||.|-..-+...- ...|++|.+++.....+..|.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeCC
Confidence 3468899876655432 3457899999988877653 478999999888755444443
No 115
>PLN02189 cellulose synthase
Probab=68.82 E-value=3.3 Score=48.89 Aligned_cols=48 Identities=31% Similarity=0.668 Sum_probs=37.0
Q ss_pred ccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 107 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
..|.||.+.+- .| |.+-.|+--.|..|..-=.+.++..||.|++.+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 47999999754 12 44456888899999965556688899999998763
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.53 E-value=2.7 Score=42.77 Aligned_cols=30 Identities=30% Similarity=0.872 Sum_probs=23.7
Q ss_pred cCCccchhHHHhhhhc------------CCCCCCCccccccc
Q 011864 125 CLHRFCRECIDKSMRL------------GNNECPACRTHCAS 154 (476)
Q Consensus 125 CgH~FC~~CI~~~~~~------------~~~~CP~CR~~~~~ 154 (476)
|....|..|+.+|+.. ++..||.||+.|..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5566799999999852 34589999998875
No 117
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=68.33 E-value=3.3 Score=46.89 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=44.6
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCcccccccCCCCCCCcchHHHH
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHCASRRSLRDDPNYDALI 168 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (476)
+.-.+.|||+.-.+.-|+....|.|.-|..-..-.-. .....||+|.+.+.. ..+..+..+.+++
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL 370 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNIL 370 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc-cchhhhHHHHHHH
Confidence 4567899999999888877788999888875422111 234589999987665 4455555555544
No 118
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.29 E-value=3.4 Score=46.89 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=33.1
Q ss_pred cccccccccccc-cceeecccCCccchhHHHhhhhcCCCCCCC-ccccc
Q 011864 106 DVQCPICLGIIK-KTRTVMECLHRFCRECIDKSMRLGNNECPA-CRTHC 152 (476)
Q Consensus 106 ~l~C~ICl~~~~-~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~-CR~~~ 152 (476)
-+.|.||.-.+. ....+..|+|..+..|...||..+ -.||. |...|
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~C 1075 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCHC 1075 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcCc
Confidence 456887765444 334457899999999999999954 58987 55444
No 119
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=66.82 E-value=5.1 Score=41.60 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=64.3
Q ss_pred HHHHHHhhhcc-CCceeEEEEEeecCCCCCCCCCCC-----------------ccccCCCchhhhhhc-cCCCccceEEE
Q 011864 361 LVEYLRSLQEN-NDELDVRLMLVSADTQCAPSLQQP-----------------YLCCQPSLSVKQLCE-TPLQAEEVEIL 421 (476)
Q Consensus 361 ~~~~l~~~~~~-~~e~~~~l~l~~~d~~~~p~l~~p-----------------~l~c~pt~~v~~l~~-~~~~~~e~e~~ 421 (476)
|+|+|..-.-. -+---|.++|+|.+....|.+..- =|...--|-|+-++. +. |-||
T Consensus 198 l~d~ll~n~~p~ke~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~---ek~~-- 272 (331)
T PF11816_consen 198 LADCLLHNRIPPKEPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVA---EKLE-- 272 (331)
T ss_pred HHHHhhcCCCCCCCCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHH---HHhc--
Confidence 56777631111 122458899999997777777666 478888888887777 10 1111
Q ss_pred EEecccccCCCCCCCCCChhhh------hhcccccccccccccccCCCCcchhhhhhhh
Q 011864 422 MVKERLDAKGNQSTPIPTTDQL------QILEGQETLAGLRVNHTSNTDHLILAYRQKQ 474 (476)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~~l~~~~~~~~~~l~~~y~~k~ 474 (476)
...+.....+... .....+-| |+|--.-||+-+++-+|-+.|+|+|-||.|.
T Consensus 273 ~~~~~~~~~~~~~-~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 273 KTPESKTPEMKPK-KLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred cCccccCcccccc-CCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 0000000011100 01223333 3455567999999999999999999999874
No 120
>PLN02436 cellulose synthase A
Probab=66.39 E-value=4 Score=48.30 Aligned_cols=48 Identities=33% Similarity=0.749 Sum_probs=36.8
Q ss_pred ccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 107 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
..|.||.+.+- +| |.+-.|+--.|..|..-=.+.++..||.|++.+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 47999999753 22 44556888899999965556678899999998763
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.88 E-value=3.1 Score=44.86 Aligned_cols=37 Identities=30% Similarity=0.611 Sum_probs=30.1
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL 140 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~ 140 (476)
.....|.||...+......+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 4467899999988763334899999999999998863
No 122
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=65.34 E-value=4.5 Score=47.93 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=36.9
Q ss_pred ccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 107 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
-.|.||.+.+- +| |.+-.|+--.|+.|..-=.+.++..||.|++.+..
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 47999998753 12 55567888899999955455688899999998763
No 123
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=64.48 E-value=10 Score=33.41 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=60.8
Q ss_pred EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccc-eEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011864 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 450 (476)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (476)
|.|++-......+|.|.+.-.-=..++||-++.. +.+.+++ |=+|| +. .+ |+ -..
T Consensus 25 iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~V--n~---~~------p~--------~~~ 85 (112)
T cd01611 25 IPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFV--NN---SL------PP--------TSA 85 (112)
T ss_pred eEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEE--CC---cc------CC--------chh
Confidence 7888888888999999998888999999999877 6666666 44444 11 11 22 247
Q ss_pred ccccccccccCCCCcchhhhhhhh
Q 011864 451 TLAGLRVNHTSNTDHLILAYRQKQ 474 (476)
Q Consensus 451 ~l~~l~~~~~~~~~~l~~~y~~k~ 474 (476)
||++|+..|-+..|.|+|.|..-.
T Consensus 86 ~~~~lY~~~kd~DGfLyl~Ys~~~ 109 (112)
T cd01611 86 TMSQLYEEHKDEDGFLYMTYSSEE 109 (112)
T ss_pred HHHHHHHHhCCCCCEEEEEEeccc
Confidence 899999999988999999998643
No 124
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.47 E-value=3.9 Score=33.26 Aligned_cols=33 Identities=24% Similarity=0.711 Sum_probs=24.9
Q ss_pred cCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCC
Q 011864 125 CLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD 161 (476)
Q Consensus 125 CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n 161 (476)
-.|+||..|....+. ..||.|...+.. +.+++.
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~-RP~RPa 59 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVA-RPIRPA 59 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhc-CcCChH
Confidence 347999999988776 689999987765 334443
No 125
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=62.36 E-value=6.6 Score=40.50 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=36.3
Q ss_pred cccccccccccccccc---cceeecccCCccchhHHHhhhhcC--CCCCCCccc
Q 011864 102 EIRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLG--NNECPACRT 150 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~ 150 (476)
.+...+.||+=.+.-. .|++ +.|||..-..-+....+.+ .+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 5677899998766543 4565 9999999998888877644 368999954
No 126
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=61.21 E-value=1.6 Score=35.37 Aligned_cols=42 Identities=21% Similarity=0.536 Sum_probs=23.2
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
++.||.|...|..- . +|.+|..|-..+.. ...||.|..++..
T Consensus 1 e~~CP~C~~~L~~~----~-~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----G-GHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEE----T-TEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEe----C-CEEECcccccccee--cccCCCcccHHHH
Confidence 35799999875421 2 78889999876544 3679999887654
No 127
>PLN02400 cellulose synthase
Probab=60.89 E-value=5 Score=47.61 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=36.9
Q ss_pred ccccccccccccc-----c-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~-----P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-.|.||.+.+-- | |.+-.|+--.|+.|..-=-+.++..||.|++.+..
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 3479999987531 2 55567888899999854445678899999998764
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.23 E-value=4.8 Score=39.25 Aligned_cols=46 Identities=20% Similarity=0.524 Sum_probs=38.4
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~ 152 (476)
...|.+|..+...-+.+-.|+-.+...|+..++.. ...||.|.--+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 45799999999888877788888999999999984 68899996533
No 129
>PLN02195 cellulose synthase A
Probab=57.87 E-value=7.6 Score=45.68 Aligned_cols=47 Identities=19% Similarity=0.552 Sum_probs=35.9
Q ss_pred ccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 107 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 107 l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
-.|.||.+.+- +| |.+-.|+-..|+.|..-=-+.++..||.|++.+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 37999998543 22 5557799999999995444567889999999775
No 130
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.23 E-value=16 Score=33.38 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=24.9
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
++.+|-||+..-+ .--||| -|..|-. ..|..|...++.
T Consensus 64 ddatC~IC~KTKF----ADG~GH-~C~YCq~-------r~CARCGGrv~l 101 (169)
T KOG3799|consen 64 DDATCGICHKTKF----ADGCGH-NCSYCQT-------RFCARCGGRVSL 101 (169)
T ss_pred cCcchhhhhhccc----ccccCc-ccchhhh-------hHHHhcCCeeee
Confidence 4568999997533 245899 4777743 456677666554
No 131
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=55.49 E-value=9.3 Score=29.65 Aligned_cols=44 Identities=20% Similarity=0.613 Sum_probs=29.7
Q ss_pred cccccccccccce-eecccC--CccchhHHHhhhhcCCCCCCCccccccc
Q 011864 108 QCPICLGIIKKTR-TVMECL--HRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~~~~~Pv-~i~~Cg--H~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.|-.|-..+.... ...-|. .+||..|....+. +.||.|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 4666766554211 113355 4899999998875 789999987765
No 132
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=53.90 E-value=3.9 Score=41.55 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=21.9
Q ss_pred cccccccccccccceeecc----cCCccchhHHHhhhhcCCCCCCCcccc
Q 011864 106 DVQCPICLGIIKKTRTVME----CLHRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~----CgH~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
.-.||||.....-.+..-. --|.+|..|-..|-- ....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 4689999987665543221 246779999999976 44689999763
No 133
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=53.74 E-value=9.3 Score=45.28 Aligned_cols=49 Identities=22% Similarity=0.564 Sum_probs=37.2
Q ss_pred cccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...|.||.+.+- +| |.+-.|+-..|..|..-=.+.++..||.|++.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 447999998753 22 45567888899999965555678899999998763
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=52.84 E-value=9.4 Score=39.60 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=35.6
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-.||||...+. .+..-.+|++..|..|+..... +...||.||++...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCcccc
Confidence 457999999663 2222246888889999988777 67899999976653
No 135
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=52.14 E-value=23 Score=38.70 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=20.3
Q ss_pred cccccccccccc---cceeecccCCccchhHHH
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECID 135 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~ 135 (476)
.-.|..|.-.|. .-..+..||-+||..|-.
T Consensus 901 a~~cmacq~pf~afrrrhhcrncggifcg~cs~ 933 (990)
T KOG1819|consen 901 AEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSC 933 (990)
T ss_pred chhhhhccCcHHHHHHhhhhcccCceeeccccc
Confidence 345666665543 334457899999999954
No 136
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=51.66 E-value=7.6 Score=31.08 Aligned_cols=12 Identities=50% Similarity=1.173 Sum_probs=9.1
Q ss_pred ccchhHHHhhhh
Q 011864 128 RFCRECIDKSMR 139 (476)
Q Consensus 128 ~FC~~CI~~~~~ 139 (476)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.16 E-value=14 Score=32.57 Aligned_cols=42 Identities=26% Similarity=0.505 Sum_probs=29.9
Q ss_pred ccccccccccccc-------------eeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864 107 VQCPICLGIIKKT-------------RTVMECLHRFCRECIDKSMRLGNNECPACR 149 (476)
Q Consensus 107 l~C~ICl~~~~~P-------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR 149 (476)
..|--|+..|..+ .....|.+.||.+|=.-+-. ....||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 3599999887654 23567999999999443333 556799985
No 138
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.62 E-value=13 Score=37.35 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=32.9
Q ss_pred ccccccccccccccce---eecccC-----CccchhHHHhhhhcCC-------CCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTR---TVMECL-----HRFCRECIDKSMRLGN-------NECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv---~i~~Cg-----H~FC~~CI~~~~~~~~-------~~CP~CR~~~~~ 154 (476)
.+-.|-||+..=.+-. -+-||. |-.+..|+..|+.... -.||.|++....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3567999997644221 113443 5568999999997421 279999996653
No 139
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=49.11 E-value=8.3 Score=43.83 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=37.8
Q ss_pred cccccccccccccccc---------eeecccCCcc--------------------chhHHHhhhhc-------CCCCCCC
Q 011864 104 RKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPA 147 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P---------v~i~~CgH~F--------------------C~~CI~~~~~~-------~~~~CP~ 147 (476)
.+--.|+-|+.-+.+| +.++.||.+| |..|...+-.- ....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 3456899999887766 3457899988 99999877541 2347999
Q ss_pred ccccccc
Q 011864 148 CRTHCAS 154 (476)
Q Consensus 148 CR~~~~~ 154 (476)
|.-.+..
T Consensus 179 CGP~~~l 185 (750)
T COG0068 179 CGPHLFL 185 (750)
T ss_pred cCCCeEE
Confidence 9876554
No 140
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=49.02 E-value=8.9 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=10.0
Q ss_pred cccccccccccc-eeecccCCcc
Q 011864 108 QCPICLGIIKKT-RTVMECLHRF 129 (476)
Q Consensus 108 ~C~ICl~~~~~P-v~i~~CgH~F 129 (476)
.||-|...+... .....|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 366666544322 2223355554
No 141
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=48.85 E-value=9.1 Score=28.87 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=23.4
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhc-CCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~ 150 (476)
.+.||.|...|.... ++..|....... ....||+|..
T Consensus 2 ~f~CP~C~~~~~~~~--------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS--------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHH--------HHHHHHhHCcCCCCCccCCCchh
Confidence 578999999544322 344455554432 3468999986
No 142
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.82 E-value=6.3 Score=40.39 Aligned_cols=49 Identities=29% Similarity=0.795 Sum_probs=40.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
.....|-||...+.-|...-.|+|.||..|...|... ...||.|+..+.
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcC
Confidence 3466899999999988876679999999999999884 478999987654
No 143
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=47.81 E-value=19 Score=31.35 Aligned_cols=29 Identities=31% Similarity=0.794 Sum_probs=22.2
Q ss_pred CCccchhHHHhhhhc--------CCCCCCCccccccc
Q 011864 126 LHRFCRECIDKSMRL--------GNNECPACRTHCAS 154 (476)
Q Consensus 126 gH~FC~~CI~~~~~~--------~~~~CP~CR~~~~~ 154 (476)
.-.||..||..++.. ....||.||..+.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnC 73 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNC 73 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCC
Confidence 678999999887752 34579999986654
No 144
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=47.20 E-value=34 Score=28.73 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCCCCCCCccccCCCchhhhhhc-----cCCCccc-eEEEEEecccccCCCCCCCCCChhhhhhcccccccccccccccC
Q 011864 388 CAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTS 461 (476)
Q Consensus 388 ~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~ 461 (476)
.+|.|.+.-.-=..+++|-++.. +.+.+++ |=+||- +.+. |+ .++||++|+..| .
T Consensus 11 ~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvn---n~f~-------p~--------~d~~~g~LY~~~-~ 71 (87)
T cd01612 11 SAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYIN---NSFA-------PS--------PDENVGNLYRCF-G 71 (87)
T ss_pred CCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC---CccC-------CC--------chhHHHHHHHhc-C
Confidence 47999988888899999988887 6776666 666661 1111 22 245899999999 6
Q ss_pred CCCcchhhhhhh
Q 011864 462 NTDHLILAYRQK 473 (476)
Q Consensus 462 ~~~~l~~~y~~k 473 (476)
-.|.|||.|..-
T Consensus 72 ~dGfLyi~Ys~~ 83 (87)
T cd01612 72 TNGELIVSYCKT 83 (87)
T ss_pred CCCEEEEEEeCc
Confidence 899999999753
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=44.16 E-value=14 Score=38.39 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=24.9
Q ss_pred ccccccccccc-c-ceeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864 107 VQCPICLGIIK-K-TRTVMECLHRFCRECIDKSMRLGNNECPACR 149 (476)
Q Consensus 107 l~C~ICl~~~~-~-Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR 149 (476)
..|-.|...+. . -+++-.|.+.||.+|= .++...-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccch-HHHHhhhhcCCCcC
Confidence 34777844333 2 2445668888888883 33333445788885
No 146
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.87 E-value=9.6 Score=28.56 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=23.3
Q ss_pred ccccccccccc---cceeecccCCccchhHHHhhhh
Q 011864 107 VQCPICLGIIK---KTRTVMECLHRFCRECIDKSMR 139 (476)
Q Consensus 107 l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~ 139 (476)
..|.+|...|. .......||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 35888876443 3344578999999999876554
No 148
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=42.57 E-value=13 Score=36.90 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=35.4
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhc-CCCCCCC
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA 147 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~ 147 (476)
.-++.|||-+..+.-|+....|.|.|=..-|...+.. ....||.
T Consensus 187 ~~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 187 LLSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hhcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 3468999999999999866889999999999998872 2346774
No 149
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=42.54 E-value=12 Score=37.62 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=36.0
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhc-CCCCCCC
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA 147 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~ 147 (476)
-.+.|||-...+.+|+....|||.|=+.-|..++.. ..-.||+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 367899999999999977899999999999998873 2346887
No 150
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=42.14 E-value=12 Score=43.02 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=38.0
Q ss_pred ccccccccccccccc---------eeecccCCcc--------------------chhHHHhhhhc-------CCCCCCCc
Q 011864 105 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 148 (476)
Q Consensus 105 e~l~C~ICl~~~~~P---------v~i~~CgH~F--------------------C~~CI~~~~~~-------~~~~CP~C 148 (476)
+.-.|+-|+.-+.+| +.++.||..| |..|...+..- ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 456899999988776 4557888888 99999998642 12479999
Q ss_pred cccccc
Q 011864 149 RTHCAS 154 (476)
Q Consensus 149 R~~~~~ 154 (476)
.-.+..
T Consensus 147 gp~l~l 152 (711)
T TIGR00143 147 GPQLNF 152 (711)
T ss_pred CcEEEE
Confidence 877654
No 151
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=11 Score=42.75 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=35.2
Q ss_pred cccccccccccceeecccCC-ccchhHHHhhhhc-C----CCCCCCccccccc
Q 011864 108 QCPICLGIIKKTRTVMECLH-RFCRECIDKSMRL-G----NNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~-~----~~~CP~CR~~~~~ 154 (476)
.|+||-.-+.-+.. -.||| ..|..|..+.... . ...||+|+..+..
T Consensus 2 ~c~ic~~s~~~~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCcccccc-ccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 59999887777764 78999 9999999886542 2 3468999985543
No 152
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.06 E-value=5.5 Score=40.25 Aligned_cols=45 Identities=29% Similarity=0.633 Sum_probs=35.0
Q ss_pred cccccccccccc------cceeecc--------cCCccchhHHHhhhhcCCCCCCCcccc
Q 011864 106 DVQCPICLGIIK------KTRTVME--------CLHRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 106 ~l~C~ICl~~~~------~Pv~i~~--------CgH~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
.-.|.||...+. .|.. +. |||+.|..|+...+......||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~v-l~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLV-LSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhH-HHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346999987765 3443 55 999999999999887544789999874
No 153
>PF14353 CpXC: CpXC protein
Probab=40.04 E-value=23 Score=31.25 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=25.8
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~ 154 (476)
++||-|...+...+. +.-.-..=..=....+.. ...+||.|...+..
T Consensus 2 itCP~C~~~~~~~v~-~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVW-TSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEE-eEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 579989888775543 211111112223333331 23589999987754
No 154
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.71 E-value=9.4 Score=39.41 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=30.8
Q ss_pred cccccccccccccceeec---ccC--CccchhHHHhhhhcCCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVM---ECL--HRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~---~Cg--H~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
.-.||||.....-.+... .=| +.+|..|-..|-- ....||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 458999998765443211 233 4669999999876 4578999986
No 155
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=39.67 E-value=8.9 Score=38.84 Aligned_cols=53 Identities=19% Similarity=0.467 Sum_probs=37.3
Q ss_pred ccccccccccccccc-c-------eeecccCCccchhHHHh-hhhc---------CCCCCCCcccccccCC
Q 011864 104 RKDVQCPICLGIIKK-T-------RTVMECLHRFCRECIDK-SMRL---------GNNECPACRTHCASRR 156 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~-P-------v~i~~CgH~FC~~CI~~-~~~~---------~~~~CP~CR~~~~~~~ 156 (476)
...+.|++|-..+.. | +..++|...||..-..+ ||-+ ..+.||.|.+.|..+.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS 229 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS 229 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH
Confidence 457899999887752 2 11267888888877754 6632 3578999999988743
No 156
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=39.15 E-value=9.5 Score=35.09 Aligned_cols=27 Identities=19% Similarity=0.743 Sum_probs=19.2
Q ss_pred cccccccccccccceeecccCCccch-hHH
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCR-ECI 134 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~-~CI 134 (476)
--+|+||. +..+..++.||..||. .|+
T Consensus 118 r~fCaVCG--~~S~ysC~~CG~kyCsv~C~ 145 (156)
T KOG3362|consen 118 RKFCAVCG--YDSKYSCVNCGTKYCSVRCL 145 (156)
T ss_pred chhhhhcC--CCchhHHHhcCCceeechhh
Confidence 35788998 5566667889988875 344
No 157
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.10 E-value=22 Score=42.02 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=32.4
Q ss_pred ccccccccccccccceeecccCC-----ccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH-----~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
....|+-|........ |..||. .||..|-.. . ....||.|......
T Consensus 625 g~RfCpsCG~~t~~fr-CP~CG~~Te~i~fCP~CG~~--~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRR-CPFCGTHTEPVYRCPRCGIE--V-EEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCccc-CCCCCCCCCcceeCccccCc--C-CCCcCCCCCCCCCc
Confidence 3468999998764443 477984 599999332 2 34679999987765
No 158
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=38.56 E-value=13 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.487 Sum_probs=18.1
Q ss_pred ccccccccccccc---cceeecccCCccchhHHHhhhh
Q 011864 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMR 139 (476)
Q Consensus 105 e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~ 139 (476)
+...|.+|...|. .....-.||+.||..|......
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 3467999998774 3344567999999999865543
No 159
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=35.55 E-value=19 Score=34.86 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred eecccccccccccccccccccc-cc-----eeecccCCccchhHH
Q 011864 96 VFVELPEIRKDVQCPICLGIIK-KT-----RTVMECLHRFCRECI 134 (476)
Q Consensus 96 ~~~~~~~l~e~l~C~ICl~~~~-~P-----v~i~~CgH~FC~~CI 134 (476)
....+..|...+.|-||..... -+ .+ ..-.|.|...||
T Consensus 91 WLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF-~E~rH~~GlrcL 134 (196)
T PF11931_consen 91 WLYKLHGLGVEYKCEICGNQSYKGRKAFEKHF-QEWRHAYGLRCL 134 (196)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHhCCCCeeeeEeCCCcceecHHHHHHhc-ChhHHHccChhc
Confidence 4567777889999999998654 22 22 457788888887
No 160
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=34.82 E-value=9.5 Score=28.88 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=19.2
Q ss_pred ccccc--ccccccc-----c--eeecccCCccchhHHHhhh
Q 011864 107 VQCPI--CLGIIKK-----T--RTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 107 l~C~I--Cl~~~~~-----P--v~i~~CgH~FC~~CI~~~~ 138 (476)
..||- |..++.. . ++...|++.||..|-..|-
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 47877 8876652 2 4545599999999988773
No 161
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.68 E-value=12 Score=43.28 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=36.2
Q ss_pred ccccccccccccccc-eeecccCCccchhHHHhhhh-----cCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKT-RTVMECLHRFCRECIDKSMR-----LGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~P-v~i~~CgH~FC~~CI~~~~~-----~~~~~CP~CR~~~~~ 154 (476)
..-.|..|...+++- -.+..|++.||..|+..|.- .....|+.|+..+..
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 345788998877764 34578999999999999951 122468888776665
No 162
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.54 E-value=17 Score=37.58 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=31.5
Q ss_pred ccccccccccccccceeec--ccC--CccchhHHHhhhhcCCCCCCCccc
Q 011864 105 KDVQCPICLGIIKKTRTVM--ECL--HRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~--~Cg--H~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
..-.||||.....-.+..+ .=| +.+|..|-..|-- ....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 4578999998765443211 233 4569999999876 4578999985
No 163
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=32.85 E-value=17 Score=40.57 Aligned_cols=42 Identities=33% Similarity=0.802 Sum_probs=26.3
Q ss_pred cccccccccc--ccc-----cceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 105 KDVQCPICLG--IIK-----KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 105 e~l~C~ICl~--~~~-----~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
..+.|.||.. ++. +...+..|++.|+..|+.. ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchHH
Confidence 4566777743 111 1234456999999999765 3455999954
No 164
>PF12773 DZR: Double zinc ribbon
Probab=32.83 E-value=34 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=14.3
Q ss_pred ccchhHHHhhh--hcCCCCCCCcccccc
Q 011864 128 RFCRECIDKSM--RLGNNECPACRTHCA 153 (476)
Q Consensus 128 ~FC~~CI~~~~--~~~~~~CP~CR~~~~ 153 (476)
.||..|=.... ......||.|...+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 35666655444 223356777777544
No 165
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.42 E-value=29 Score=35.97 Aligned_cols=49 Identities=27% Similarity=0.526 Sum_probs=29.9
Q ss_pred ccccccccccccc--------------c---c-eeecccCCccchhHHHhhhhcC---------CCCCCCccccccc
Q 011864 105 KDVQCPICLGIIK--------------K---T-RTVMECLHRFCRECIDKSMRLG---------NNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~--------------~---P-v~i~~CgH~FC~~CI~~~~~~~---------~~~CP~CR~~~~~ 154 (476)
.+-.||+|+.+-. + | .+..||||. |..=-..+|..- ...||.|-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3567999986421 1 1 223689994 555555555421 2379999987765
No 166
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=32.14 E-value=25 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=9.0
Q ss_pred ccccccccccccc
Q 011864 107 VQCPICLGIIKKT 119 (476)
Q Consensus 107 l~C~ICl~~~~~P 119 (476)
..||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4688887777644
No 167
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.80 E-value=14 Score=27.95 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=21.2
Q ss_pred ccc--cccccccc-------ceeecccCCccchhHHHhhhh
Q 011864 108 QCP--ICLGIIKK-------TRTVMECLHRFCRECIDKSMR 139 (476)
Q Consensus 108 ~C~--ICl~~~~~-------Pv~i~~CgH~FC~~CI~~~~~ 139 (476)
.|| -|..++.. .+....|+|.||..|...|-.
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC
Confidence 477 66554332 244346899999999888743
No 168
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.15 E-value=24 Score=30.03 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=11.5
Q ss_pred ccchhHHHhhhhc
Q 011864 128 RFCRECIDKSMRL 140 (476)
Q Consensus 128 ~FC~~CI~~~~~~ 140 (476)
-||+.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999973
No 169
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=28.62 E-value=47 Score=27.56 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=28.7
Q ss_pred cccCCCchhhhhhc-cCCCccceEEEEEecccc
Q 011864 397 LCCQPSLSVKQLCE-TPLQAEEVEILMVKERLD 428 (476)
Q Consensus 397 l~c~pt~~v~~l~~-~~~~~~e~e~~~~~~~~~ 428 (476)
+-|.+.-|||||.+ +-++-.||++.++.+..-
T Consensus 27 ~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v 59 (81)
T PF14451_consen 27 HPFDGGATVKDVIESLGVPHTEVGLILVNGRPV 59 (81)
T ss_pred EecCCCCcHHHHHHHcCCChHHeEEEEECCEEC
Confidence 46889999999999 999999999999988844
No 170
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=27.89 E-value=44 Score=25.80 Aligned_cols=42 Identities=29% Similarity=0.650 Sum_probs=29.3
Q ss_pred cccccccccccc--c-ceeecccCCccchhHHHhhhhcCCCCCCC--ccccc
Q 011864 106 DVQCPICLGIIK--K-TRTVMECLHRFCRECIDKSMRLGNNECPA--CRTHC 152 (476)
Q Consensus 106 ~l~C~ICl~~~~--~-Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~--CR~~~ 152 (476)
.-.|++|...|. + -|....||-.+++.|... ...|-. |...+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCc
Confidence 457999999994 3 355578999999999643 244544 55443
No 172
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=27.85 E-value=36 Score=35.31 Aligned_cols=45 Identities=7% Similarity=-0.180 Sum_probs=33.5
Q ss_pred cccccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHC 152 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~ 152 (476)
-..+.|..|..-+...+- .+|+| .||..|.... -...||.|....
T Consensus 341 ~s~~~~~~~~~~~~st~~-~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIW-SGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred hhhcccccccCceeeeEe-ecCCcccChhhhhhcc---cCCccccccccc
Confidence 346779999887766663 79998 7899998732 347899997643
No 173
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.68 E-value=52 Score=37.88 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=34.7
Q ss_pred cccccccccccccc-eeecccCCccchhHHHhhhhcCCCCCCC--ccccccc
Q 011864 106 DVQCPICLGIIKKT-RTVMECLHRFCRECIDKSMRLGNNECPA--CRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~--CR~~~~~ 154 (476)
...|.+|..++.-- +.+--|||.-+..|+..|+. +...||. |...+..
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHY 829 (839)
T ss_pred hcCceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccc
Confidence 44799998776632 33345999999999999998 5577877 6665543
No 174
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=27.08 E-value=21 Score=38.04 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred ccccccccccccc-------------ceeecccCCccchhHHHhhhhc-----CCCCCCCcccccc
Q 011864 106 DVQCPICLGIIKK-------------TRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~~-------------Pv~i~~CgH~FC~~CI~~~~~~-----~~~~CP~CR~~~~ 153 (476)
...||+=+..+.- |..-+.|||.+-+. .|-.. ....||+|+.+-.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 4579988776643 33337899987654 45431 2468999998543
No 175
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=27.04 E-value=48 Score=38.48 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=35.4
Q ss_pred ccccccccc--ccccceeecccCCc-----cchhHHHhhhhc-CCCCCCCccccccc
Q 011864 106 DVQCPICLG--IIKKTRTVMECLHR-----FCRECIDKSMRL-GNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~--~~~~Pv~i~~CgH~-----FC~~CI~~~~~~-~~~~CP~CR~~~~~ 154 (476)
.-.|-||.. .-.+|.. -||..+ .+..|+..|+.- +...|-.|..++.-
T Consensus 12 ~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred chhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 468999975 4457765 677653 589999999983 44689999987654
No 176
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.04 E-value=35 Score=23.84 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=7.6
Q ss_pred cccccccccccc
Q 011864 107 VQCPICLGIIKK 118 (476)
Q Consensus 107 l~C~ICl~~~~~ 118 (476)
+.||-|...|.-
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 457777766653
No 177
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=26.62 E-value=29 Score=38.13 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=25.8
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhhc-----------CCCCCCCccccccc
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----------GNNECPACRTHCAS 154 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-----------~~~~CP~CR~~~~~ 154 (476)
|...+.|..|..+--.--....=--.||..|+...-.. +-+.||.|...+..
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~ 64 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSV 64 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCccee
Confidence 34456677776654311000112235777777554210 12467888776554
No 178
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=26.01 E-value=31 Score=39.87 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHHhhhccCCceeEEEEEeecC---CCCCCCC-CCCccccCCCchh
Q 011864 353 SRSTRLNKLVEYLRSLQENNDELDVRLMLVSAD---TQCAPSL-QQPYLCCQPSLSV 405 (476)
Q Consensus 353 ~r~~~~~k~~~~l~~~~~~~~e~~~~l~l~~~d---~~~~p~l-~~p~l~c~pt~~v 405 (476)
..+.||..-- ||-..--.=+-||-+++|-+.| -..+||- ++|-.--=.|.|.
T Consensus 921 ~s~~ri~~~~-~~~~~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~ 976 (1374)
T PTZ00303 921 PSARRIYHHS-YIDLPHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSA 976 (1374)
T ss_pred chhhhhhhhc-ccCCCcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhh
Confidence 4445665554 6666666667778788887777 3456877 7775544444443
No 179
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=25.20 E-value=37 Score=29.57 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=17.4
Q ss_pred ceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 119 TRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 119 Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
|..++.|||.|=.. ..-+. .-||.|..
T Consensus 2 pH~CtrCG~vf~~g--~~~il---~GCp~CG~ 28 (112)
T COG3364 2 PHQCTRCGEVFDDG--SEEIL---SGCPKCGC 28 (112)
T ss_pred Cceecccccccccc--cHHHH---ccCccccc
Confidence 45578899998654 22222 34999875
No 180
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=24.85 E-value=51 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.603 Sum_probs=27.9
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-.|-||...+..+ ||.||..|.. ....|..|...+..
T Consensus 44 ~~~C~~CK~~v~q~------g~~YCq~CAY-----kkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP------GAKYCQTCAY-----KKGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC------CCccChhhhc-----ccCcccccCCeecc
Confidence 34799998764432 7789999953 24789999987754
No 181
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.01 E-value=39 Score=36.67 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=36.5
Q ss_pred ccccccccccccccc-ccccccceee-cccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 98 VELPEIRKDVQCPIC-LGIIKKTRTV-MECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 98 ~~~~~l~e~l~C~IC-l~~~~~Pv~i-~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
..+-.+.+.+.|++| ...|...+.+ -.|.-+||-.||...+.. ..|+.|-+
T Consensus 211 ~~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~ 263 (448)
T KOG0314|consen 211 RTVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGA 263 (448)
T ss_pred HHhccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchh
Confidence 344446788999999 7788877653 458899999999887762 34555543
No 182
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.59 E-value=35 Score=34.32 Aligned_cols=31 Identities=26% Similarity=0.682 Sum_probs=20.8
Q ss_pred ccccccccccccc-------------eeecccCCcc-------chhHHHhh
Q 011864 107 VQCPICLGIIKKT-------------RTVMECLHRF-------CRECIDKS 137 (476)
Q Consensus 107 l~C~ICl~~~~~P-------------v~i~~CgH~F-------C~~CI~~~ 137 (476)
|+|-+|.+.+..| ++++.|+-+| +-.||..-
T Consensus 4 FtCnvCgEsvKKp~vekH~srCrn~~fSCIDC~k~F~~~sYknH~kCITEa 54 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQVEKHMSRCRNAYFSCIDCGKTFERVSYKNHTKCITEA 54 (276)
T ss_pred EehhhhhhhccccchHHHHHhccCCeeEEeecccccccchhhhhhhhcchH
Confidence 6799999888766 3456666666 45566543
No 183
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=23.45 E-value=47 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=15.7
Q ss_pred cccccccccc-ceeecccCCccchh
Q 011864 109 CPICLGIIKK-TRTVMECLHRFCRE 132 (476)
Q Consensus 109 C~ICl~~~~~-Pv~i~~CgH~FC~~ 132 (476)
|.+|.....- |+...-|+..||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5667665444 77655588888863
No 184
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=47 Score=35.94 Aligned_cols=20 Identities=30% Similarity=0.585 Sum_probs=15.3
Q ss_pred cceeecccCCccchhHHHhhh
Q 011864 118 KTRTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 118 ~Pv~i~~CgH~FC~~CI~~~~ 138 (476)
.+|. -.|||.||..|...|-
T Consensus 178 ~~v~-C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 178 VEVD-CGCGHEFCFACGEESH 197 (444)
T ss_pred ccee-CCCCchhHhhcccccc
Confidence 4454 6799999999987664
No 185
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.31 E-value=39 Score=29.60 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=14.8
Q ss_pred chhHHHhhhhc--CCCCCCCccccccc
Q 011864 130 CRECIDKSMRL--GNNECPACRTHCAS 154 (476)
Q Consensus 130 C~~CI~~~~~~--~~~~CP~CR~~~~~ 154 (476)
|..|-.+++.. ....||.|.+.+..
T Consensus 12 Cp~CG~kFYDLnk~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 12 CPSCGAKFYDLNKDPIVCPKCGTEFPP 38 (108)
T ss_pred CCCCcchhccCCCCCccCCCCCCccCc
Confidence 44444444432 34579999987765
No 186
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.08 E-value=87 Score=36.32 Aligned_cols=10 Identities=10% Similarity=0.022 Sum_probs=4.6
Q ss_pred CCccchhHHH
Q 011864 126 LHRFCRECID 135 (476)
Q Consensus 126 gH~FC~~CI~ 135 (476)
...||..-|.
T Consensus 477 ~~~q~e~~is 486 (1118)
T KOG1029|consen 477 VTKQRELMIS 486 (1118)
T ss_pred hhhHHHHHHH
Confidence 3445554443
No 187
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.99 E-value=47 Score=29.79 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=40.2
Q ss_pred ccccCCCchhhhhhc-----cCCCccceEEEEEecccccCCCCCCCCCChhhhhhcccccccccccccccCCCCcchhhh
Q 011864 396 YLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAY 470 (476)
Q Consensus 396 ~l~c~pt~~v~~l~~-----~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~l~~~y 470 (476)
||==..+|||-++.. +.+.++.| .+.|.+. +. + -..||++|+..+-.-.|-|||.|
T Consensus 44 fllVP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn~----lp------~--------~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 44 FLALPRDATVAELEAAVRQALGTSAKKV-TLAIEGS----TP------A--------VTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred EEEcCCCCcHHHHHHHHHHHcCCChhHE-EEEECCc----cC------C--------ccchHHHHHHHhcCCCCeEEEEE
Confidence 544677899999877 88888885 3333221 11 1 23578888888888889999888
Q ss_pred hh
Q 011864 471 RQ 472 (476)
Q Consensus 471 ~~ 472 (476)
.-
T Consensus 105 s~ 106 (121)
T PTZ00380 105 RT 106 (121)
T ss_pred cc
Confidence 63
No 188
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=22.27 E-value=67 Score=31.01 Aligned_cols=41 Identities=32% Similarity=0.698 Sum_probs=27.4
Q ss_pred ccccccccccc-ccc------cceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864 104 RKDVQCPICLG-IIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (476)
Q Consensus 104 ~e~l~C~ICl~-~~~------~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~ 150 (476)
...+.|.||.+ .+. ..+.+..|+..|+..|... ..||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 34677888874 222 2234457999999999752 56999954
No 189
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=22.15 E-value=44 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=14.5
Q ss_pred ccc--cccccccceeecccCCccchhHH
Q 011864 109 CPI--CLGIIKKTRTVMECLHRFCRECI 134 (476)
Q Consensus 109 C~I--Cl~~~~~Pv~i~~CgH~FC~~CI 134 (476)
|.+ |......|+....|+..||..-.
T Consensus 1 C~~~~C~~~~~~~~~C~~C~~~FC~~Hr 28 (43)
T PF01428_consen 1 CSFPGCKKKDFLPFKCKHCGKSFCLKHR 28 (43)
T ss_dssp -SSTTT--BCTSHEE-TTTS-EE-TTTH
T ss_pred CccCcCcCccCCCeECCCCCcccCcccc
Confidence 455 77766678876679999987643
No 190
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.75 E-value=24 Score=22.24 Aligned_cols=8 Identities=50% Similarity=1.194 Sum_probs=4.0
Q ss_pred CCCCCccc
Q 011864 143 NECPACRT 150 (476)
Q Consensus 143 ~~CP~CR~ 150 (476)
..||.|.+
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555544
No 191
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=41 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.634 Sum_probs=26.2
Q ss_pred cccccccccccccc-----eeecccCCccchhHHHhhh
Q 011864 106 DVQCPICLGIIKKT-----RTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 106 ~l~C~ICl~~~~~P-----v~i~~CgH~FC~~CI~~~~ 138 (476)
.-.||-|.-++..+ +.++.|+|.||+-|-....
T Consensus 368 ~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 368 SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred CCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 34799999988744 5678999999999987655
No 192
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=21.40 E-value=39 Score=33.89 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=33.7
Q ss_pred ccccccccccccc----ceeecccC-----CccchhHHHhhhhc-CCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKK----TRTVMECL-----HRFCRECIDKSMRL-GNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~----Pv~i~~Cg-----H~FC~~CI~~~~~~-~~~~CP~CR~~~~~ 154 (476)
...|-||...... +. +.||. +..+..|+..|+.. +...|..|...+..
T Consensus 78 ~~~cRIc~~~~~~~~~~~l-~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLL-ISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEeccccccccccc-ccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4679999985432 23 35554 35589999999983 45689999886654
No 193
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.64 E-value=5.5e+02 Score=28.14 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=40.7
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+.|.|-.++...||....-||.|=..-|.+++. -+..||.-..+++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~ 47 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSI 47 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCH
Confidence 369999999999997677999999999999998 45889998887765
No 194
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.23 E-value=57 Score=37.18 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=21.5
Q ss_pred cccccccccc-cceeecccCCc----cchhHHHhhhhcCCCCCCCcccccc
Q 011864 108 QCPICLGIIK-KTRTVMECLHR----FCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 108 ~C~ICl~~~~-~Pv~i~~CgH~----FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
.||-|..... ...++..||.. +|..|=...-. +...||.|.+.+.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~-~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPV-DEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCc-ccccccccCCccc
Confidence 5666665432 22333444432 35555433222 3456777776543
No 195
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.06 E-value=52 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=17.5
Q ss_pred ceeecccCCccchhHHHhhhhcCCCCCCCcccc
Q 011864 119 TRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 119 Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
|..++.||+.|=..-.. ++ .-||.|...
T Consensus 1 PH~Ct~Cg~~f~dgs~e-il----~GCP~CGg~ 28 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGSKE-IL----SGCPECGGN 28 (131)
T ss_pred CcccCcCCCCcCCCcHH-HH----ccCcccCCc
Confidence 44568899988543322 22 349999763
Done!