Query 011864
Match_columns 476
No_of_seqs 365 out of 1956
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:53:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl2_A E3 ubiquitin-protein li 99.5 7E-15 2.4E-19 128.6 4.2 75 100-175 46-120 (124)
2 1jm7_B BARD1, BRCA1-associated 99.5 7.6E-15 2.6E-19 127.3 3.0 90 99-192 15-115 (117)
3 1t1h_A Gspef-atpub14, armadill 99.5 1.9E-14 6.7E-19 115.4 5.1 68 103-172 5-72 (78)
4 2ckl_B Ubiquitin ligase protei 99.5 1.6E-14 5.5E-19 132.3 4.8 78 98-175 46-123 (165)
5 3ztg_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 117.8 5.2 71 102-173 9-81 (92)
6 4ayc_A E3 ubiquitin-protein li 99.5 2E-13 6.8E-18 121.8 10.0 65 104-173 51-115 (138)
7 2ckl_A Polycomb group ring fin 99.4 7.1E-14 2.4E-18 119.3 5.0 78 98-176 7-87 (108)
8 2kr4_A Ubiquitin conjugation f 99.4 8.6E-14 3E-18 114.5 5.0 67 103-172 11-77 (85)
9 3lrq_A E3 ubiquitin-protein li 99.4 4.8E-14 1.7E-18 119.1 3.1 73 97-170 13-85 (100)
10 1z6u_A NP95-like ring finger p 99.4 6.6E-14 2.3E-18 127.1 4.1 74 100-174 72-145 (150)
11 2kre_A Ubiquitin conjugation f 99.4 1.8E-13 6E-18 116.2 5.1 68 102-172 25-92 (100)
12 1wgm_A Ubiquitin conjugation f 99.4 3.6E-13 1.2E-17 113.9 6.9 68 102-172 18-86 (98)
13 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.3E-18 115.9 3.4 72 99-172 15-86 (99)
14 2egp_A Tripartite motif-contai 99.4 8.4E-14 2.9E-18 111.6 1.3 66 101-168 7-78 (79)
15 3l11_A E3 ubiquitin-protein li 99.3 2.3E-13 7.8E-18 117.3 2.6 72 102-174 11-88 (115)
16 2ecw_A Tripartite motif-contai 99.3 4.8E-13 1.7E-17 108.0 3.8 67 100-168 13-84 (85)
17 3hct_A TNF receptor-associated 99.3 5.8E-13 2E-17 115.6 4.3 76 98-175 10-85 (118)
18 2djb_A Polycomb group ring fin 99.3 1E-12 3.5E-17 104.0 5.3 54 100-154 9-62 (72)
19 2ecv_A Tripartite motif-contai 99.3 6.3E-13 2.2E-17 107.3 4.0 67 100-168 13-84 (85)
20 2yur_A Retinoblastoma-binding 99.3 1.5E-12 5.2E-17 103.8 5.1 55 101-156 10-66 (74)
21 2c2l_A CHIP, carboxy terminus 99.3 1.2E-12 4.1E-17 127.8 4.7 68 104-173 206-273 (281)
22 2csy_A Zinc finger protein 183 99.3 1.5E-12 5E-17 105.4 3.9 57 104-164 13-69 (81)
23 2ecy_A TNF receptor-associated 99.3 2.1E-12 7.1E-17 100.5 4.6 53 101-154 10-62 (66)
24 2yu4_A E3 SUMO-protein ligase 99.3 1.5E-12 5.1E-17 109.0 4.0 69 103-173 4-81 (94)
25 1jm7_A BRCA1, breast cancer ty 99.3 1.4E-12 4.6E-17 111.3 3.6 71 101-173 16-88 (112)
26 2f42_A STIP1 homology and U-bo 99.3 3.1E-12 1.1E-16 119.4 5.0 70 101-172 101-170 (179)
27 3knv_A TNF receptor-associated 99.2 1.7E-12 6E-17 116.6 2.8 83 92-175 16-107 (141)
28 2ysl_A Tripartite motif-contai 99.2 7.5E-12 2.5E-16 98.7 6.0 54 100-154 14-69 (73)
29 1rmd_A RAG1; V(D)J recombinati 99.2 3E-12 1E-16 110.4 3.5 74 101-175 18-91 (116)
30 3hcs_A TNF receptor-associated 99.2 5.8E-12 2E-16 115.7 4.2 79 94-174 6-84 (170)
31 2ct2_A Tripartite motif protei 99.2 1.2E-11 4.2E-16 100.7 4.4 53 101-154 10-68 (88)
32 2ysj_A Tripartite motif-contai 99.2 1.3E-11 4.6E-16 94.8 4.4 48 100-148 14-63 (63)
33 3ng2_A RNF4, snurf, ring finge 99.2 1.4E-11 4.7E-16 96.5 3.8 50 104-154 8-63 (71)
34 2d8t_A Dactylidin, ring finger 99.1 1.6E-11 5.5E-16 96.8 3.7 49 104-154 13-61 (71)
35 1g25_A CDK-activating kinase a 99.1 1.6E-11 5.3E-16 95.2 3.1 49 106-154 3-55 (65)
36 3htk_C E3 SUMO-protein ligase 99.1 2.2E-11 7.4E-16 119.4 4.5 69 101-170 176-247 (267)
37 2ea6_A Ring finger protein 4; 99.1 2E-11 6.7E-16 94.9 3.4 50 103-154 12-68 (69)
38 2ecj_A Tripartite motif-contai 99.1 3.9E-11 1.3E-15 90.2 4.2 46 102-148 11-58 (58)
39 2ect_A Ring finger protein 126 99.1 6.3E-11 2.2E-15 94.8 4.9 50 104-154 13-64 (78)
40 2xeu_A Ring finger protein 4; 99.1 3.2E-11 1.1E-15 92.3 2.3 49 105-154 2-56 (64)
41 1chc_A Equine herpes virus-1 r 99.1 5E-11 1.7E-15 92.8 3.1 49 105-154 4-52 (68)
42 1e4u_A Transcriptional repress 99.1 1.2E-10 4E-15 94.5 5.4 53 102-155 7-63 (78)
43 1x4j_A Ring finger protein 38; 99.1 8.8E-11 3E-15 93.4 4.6 52 102-154 19-72 (75)
44 2ecn_A Ring finger protein 141 99.0 6E-11 2.1E-15 92.9 2.9 50 102-154 11-60 (70)
45 1iym_A EL5; ring-H2 finger, ub 99.0 1.2E-10 4.2E-15 86.8 4.0 48 104-153 3-54 (55)
46 2kiz_A E3 ubiquitin-protein li 99.0 1.8E-10 6E-15 90.0 4.3 49 105-154 13-63 (69)
47 2ep4_A Ring finger protein 24; 99.0 1.5E-10 5.1E-15 91.7 3.9 51 103-154 12-64 (74)
48 2l0b_A E3 ubiquitin-protein li 99.0 1.8E-10 6.2E-15 95.4 3.6 50 103-154 37-89 (91)
49 2ecm_A Ring finger and CHY zin 99.0 2.2E-10 7.4E-15 85.3 3.6 47 106-153 5-54 (55)
50 1v87_A Deltex protein 2; ring- 98.9 4.6E-10 1.6E-14 96.1 4.7 50 106-155 25-95 (114)
51 1bor_A Transcription factor PM 98.9 3E-10 1E-14 85.8 3.0 45 105-154 5-49 (56)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 6.5E-10 2.2E-14 96.6 3.4 49 104-154 5-60 (133)
53 4ic3_A E3 ubiquitin-protein li 98.9 2.6E-10 8.9E-15 91.0 0.8 49 100-154 18-67 (74)
54 2ecl_A Ring-box protein 2; RNF 98.8 1.6E-09 5.5E-14 87.9 4.1 49 105-154 14-76 (81)
55 2y1n_A E3 ubiquitin-protein li 98.8 2.5E-09 8.7E-14 110.5 4.0 53 103-156 329-381 (389)
56 2ecg_A Baculoviral IAP repeat- 98.7 3.7E-09 1.3E-13 84.3 3.0 49 100-154 19-68 (75)
57 3dpl_R Ring-box protein 1; ubi 98.7 6.6E-09 2.3E-13 89.0 4.3 48 105-153 36-100 (106)
58 4ap4_A E3 ubiquitin ligase RNF 98.7 3.4E-09 1.2E-13 92.1 1.5 49 104-154 70-125 (133)
59 2vje_A E3 ubiquitin-protein li 98.6 1E-08 3.5E-13 79.6 3.1 48 105-154 7-57 (64)
60 2yho_A E3 ubiquitin-protein li 98.6 7.1E-09 2.4E-13 84.0 1.0 48 101-154 13-61 (79)
61 2vje_B MDM4 protein; proto-onc 98.6 1.9E-08 6.6E-13 77.8 3.1 47 106-154 7-56 (63)
62 2bay_A PRE-mRNA splicing facto 98.6 1.3E-08 4.3E-13 78.6 1.8 53 106-161 3-56 (61)
63 4a0k_B E3 ubiquitin-protein li 98.5 1.4E-08 4.9E-13 88.4 0.2 47 106-153 48-111 (117)
64 3t6p_A Baculoviral IAP repeat- 98.5 2.8E-08 9.6E-13 101.6 1.4 50 99-154 288-338 (345)
65 1wim_A KIAA0161 protein; ring 98.4 8.9E-08 3E-12 79.4 2.9 47 105-151 4-61 (94)
66 2ea5_A Cell growth regulator w 98.4 1.4E-07 4.7E-12 74.2 3.4 44 105-154 14-58 (68)
67 2d8s_A Cellular modulator of i 98.3 3.7E-07 1.3E-11 74.2 4.2 52 106-158 15-74 (80)
68 2ct0_A Non-SMC element 1 homol 98.2 1.4E-06 4.6E-11 69.9 4.3 49 106-154 15-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.1 1.9E-06 6.4E-11 72.5 3.8 47 108-154 3-49 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.5 2E-05 6.7E-10 80.0 1.0 49 106-154 308-373 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.4 9.5E-05 3.2E-09 56.6 3.7 48 106-154 6-59 (60)
72 3nw0_A Non-structural maintena 96.6 0.0012 4.2E-08 63.9 3.9 49 106-154 180-229 (238)
73 3m62_A Ubiquitin conjugation f 95.9 0.0051 1.7E-07 69.9 4.8 67 103-172 888-955 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 95.3 0.0064 2.2E-07 50.3 2.1 75 105-191 2-79 (101)
75 2ko5_A Ring finger protein Z; 93.2 0.054 1.9E-06 44.9 3.2 51 101-154 23-73 (99)
76 3i2d_A E3 SUMO-protein ligase 93.1 0.036 1.2E-06 56.7 2.5 66 104-171 247-316 (371)
77 4fo9_A E3 SUMO-protein ligase 91.8 0.079 2.7E-06 54.1 3.0 65 104-170 213-281 (360)
78 1weo_A Cellulose synthase, cat 86.9 0.53 1.8E-05 38.6 3.7 49 106-154 16-70 (93)
79 2cs3_A Protein C14ORF4, MY039 86.8 1 3.5E-05 36.3 5.3 43 105-148 14-64 (93)
80 3h9d_A ATG8, microtubule-assoc 82.7 0.77 2.6E-05 39.7 3.1 78 377-473 32-115 (119)
81 3rui_B Autophagy-related prote 79.9 1.5 5.1E-05 37.8 3.9 85 369-473 25-114 (118)
82 3m95_A Autophagy related prote 75.4 2 7E-05 37.3 3.5 82 371-473 33-120 (125)
83 1z60_A TFIIH basal transcripti 75.4 1.6 5.4E-05 33.1 2.4 41 107-148 16-58 (59)
84 2r2q_A Gamma-aminobutyric acid 71.0 3 0.0001 35.2 3.5 77 377-471 28-109 (110)
85 1eo6_A GATE-16, golgi-associat 66.9 3.6 0.00012 35.2 3.1 79 377-473 29-112 (117)
86 2zjd_A Microtubule-associated 64.5 3.8 0.00013 35.8 2.8 79 377-473 36-121 (130)
87 2zet_C Melanophilin; complex, 64.0 4.7 0.00016 36.2 3.4 44 106-150 68-116 (153)
88 1zbd_B Rabphilin-3A; G protein 62.9 17 0.00057 31.8 6.7 45 106-150 55-106 (134)
89 2gmg_A Hypothetical protein PF 58.9 3.1 0.0001 35.1 1.1 33 114-152 62-94 (105)
90 2ct7_A Ring finger protein 31; 58.1 2 7E-05 34.4 -0.1 30 108-137 27-61 (86)
91 1joc_A EEA1, early endosomal a 57.4 37 0.0013 29.0 7.9 32 106-137 69-103 (125)
92 2lri_C Autoimmune regulator; Z 57.0 9.7 0.00033 29.1 3.6 45 106-151 12-59 (66)
93 4g9i_A Hydrogenase maturation 54.6 4.5 0.00015 45.2 1.9 51 104-154 104-190 (772)
94 1wd2_A Ariadne-1 protein homol 54.3 2 6.9E-05 32.4 -0.6 33 107-139 7-46 (60)
95 2jmo_A Parkin; IBR, E3 ligase, 54.2 2.8 9.7E-05 33.2 0.2 34 106-139 25-70 (80)
96 1y02_A CARP2, FYVE-ring finger 53.7 2.5 8.5E-05 36.5 -0.3 46 105-151 18-66 (120)
97 1wz3_A Autophagy 12B, ATG12B, 53.0 7.2 0.00025 32.2 2.5 74 377-473 14-92 (96)
98 3ttc_A HYPF, transcriptional r 53.0 4.9 0.00017 44.1 1.8 49 104-152 15-99 (657)
99 1wil_A KIAA1045 protein; ring 52.8 13 0.00045 30.1 3.8 35 103-137 12-47 (89)
100 3vth_A Hydrogenase maturation 51.3 5.3 0.00018 44.6 1.8 51 104-154 109-195 (761)
101 1dvp_A HRS, hepatocyte growth 49.5 7 0.00024 36.6 2.1 34 104-137 159-195 (220)
102 1vfy_A Phosphatidylinositol-3- 46.8 11 0.00038 29.1 2.5 31 107-137 12-45 (73)
103 3mjh_B Early endosome antigen 46.4 4.3 0.00015 27.3 0.0 17 105-121 4-20 (34)
104 3zyq_A Hepatocyte growth facto 45.6 9.9 0.00034 35.9 2.5 33 105-137 163-198 (226)
105 3t7l_A Zinc finger FYVE domain 44.2 11 0.00037 30.5 2.2 33 106-138 20-55 (90)
106 2o35_A Hypothetical protein DU 44.2 7.3 0.00025 32.5 1.1 12 128-139 42-53 (105)
107 2yw8_A RUN and FYVE domain-con 44.1 11 0.00036 29.9 2.1 33 106-138 19-54 (82)
108 3fyb_A Protein of unknown func 44.0 7.3 0.00025 32.4 1.1 12 128-139 41-52 (104)
109 1z2q_A LM5-1; membrane protein 43.6 11 0.00038 29.9 2.1 33 105-137 20-55 (84)
110 2xqn_T Testin, TESS; metal-bin 43.4 14 0.00048 30.9 2.9 47 105-154 29-75 (126)
111 3mpx_A FYVE, rhogef and PH dom 41.9 5.4 0.00019 40.6 0.0 33 106-138 375-410 (434)
112 3o36_A Transcription intermedi 41.3 10 0.00035 34.3 1.8 46 106-152 4-52 (184)
113 2l5u_A Chromodomain-helicase-D 41.2 19 0.00065 26.8 3.0 44 106-150 11-57 (61)
114 2yt5_A Metal-response element- 41.1 6.6 0.00022 29.6 0.4 48 106-153 6-63 (66)
115 1wfk_A Zinc finger, FYVE domai 40.9 11 0.00039 30.3 1.8 32 106-137 9-43 (88)
116 1x4u_A Zinc finger, FYVE domai 39.3 14 0.00047 29.4 2.0 32 106-137 14-48 (84)
117 2k16_A Transcription initiatio 39.1 15 0.00052 28.2 2.2 50 105-154 17-71 (75)
118 4gdk_A Ubiquitin-like protein 38.9 14 0.00048 30.1 2.0 67 387-472 14-86 (91)
119 1mm2_A MI2-beta; PHD, zinc fin 38.3 13 0.00045 27.7 1.7 45 106-151 9-56 (61)
120 2cup_A Skeletal muscle LIM-pro 38.3 13 0.00044 29.7 1.8 47 105-154 32-78 (101)
121 2lbm_A Transcriptional regulat 37.9 21 0.00072 31.5 3.2 44 106-150 63-116 (142)
122 1m3v_A FLIN4, fusion of the LI 37.9 19 0.00065 30.1 2.9 47 106-154 32-81 (122)
123 2fiy_A Protein FDHE homolog; F 36.8 7.1 0.00024 38.9 -0.1 47 104-151 180-231 (309)
124 3u5n_A E3 ubiquitin-protein li 35.8 14 0.00048 34.2 1.8 45 107-152 8-55 (207)
125 1we9_A PHD finger family prote 29.6 14 0.00048 27.5 0.5 47 105-151 5-58 (64)
126 1fp0_A KAP-1 corepressor; PHD 29.4 32 0.0011 27.9 2.7 46 105-151 24-72 (88)
127 2jne_A Hypothetical protein YF 27.7 7.8 0.00027 32.2 -1.3 42 106-154 32-73 (101)
128 1f62_A Transcription factor WS 26.9 42 0.0014 23.6 2.7 43 108-150 2-49 (51)
129 2rgt_A Fusion of LIM/homeobox 26.0 48 0.0016 29.2 3.5 46 105-154 32-77 (169)
130 1rut_X Flinc4, fusion protein 25.7 26 0.00088 31.6 1.7 48 105-154 31-81 (188)
131 2ysm_A Myeloid/lymphoid or mix 25.3 31 0.0011 28.4 2.0 45 105-149 6-55 (111)
132 2d8v_A Zinc finger FYVE domain 25.1 32 0.0011 26.5 1.8 31 106-138 8-39 (67)
133 3v43_A Histone acetyltransfera 24.9 59 0.002 27.0 3.7 44 106-149 5-62 (112)
134 2l43_A N-teminal domain from h 24.6 29 0.001 27.8 1.6 50 104-153 23-77 (88)
135 1xwh_A Autoimmune regulator; P 24.3 18 0.00062 27.3 0.3 46 105-151 7-55 (66)
136 2ro1_A Transcription intermedi 24.2 27 0.00091 32.0 1.5 44 107-151 3-49 (189)
137 3ql9_A Transcriptional regulat 23.8 66 0.0023 27.8 3.8 44 106-150 57-110 (129)
138 2puy_A PHD finger protein 21A; 23.8 21 0.00073 26.3 0.6 46 106-152 5-53 (60)
139 2jtn_A LIM domain-binding prot 23.7 40 0.0014 30.1 2.6 46 105-154 86-131 (182)
140 2yql_A PHD finger protein 21A; 23.6 14 0.00049 26.9 -0.4 44 106-150 9-55 (56)
141 1wev_A Riken cDNA 1110020M19; 23.0 20 0.00068 28.8 0.3 49 105-153 15-74 (88)
142 2xjy_A Rhombotin-2; oncoprotei 22.8 43 0.0015 27.9 2.4 48 105-154 28-78 (131)
143 3lqh_A Histone-lysine N-methyl 21.9 33 0.0011 31.5 1.6 46 107-152 3-64 (183)
144 1js8_A Hemocyanin; glycoprotei 21.8 40 0.0014 34.3 2.4 42 358-401 346-389 (394)
145 2pv0_B DNA (cytosine-5)-methyl 20.1 68 0.0023 32.8 3.6 43 107-150 94-147 (386)
No 1
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=7e-15 Score=128.61 Aligned_cols=75 Identities=25% Similarity=0.661 Sum_probs=66.6
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c 175 (476)
+..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..++|..
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HHhCccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 4456778999999999999997 89999999999999998555699999999987678999999999999998864
No 2
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.48 E-value=7.6e-15 Score=127.31 Aligned_cols=90 Identities=21% Similarity=0.527 Sum_probs=60.9
Q ss_pred ccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc-----
Q 011864 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP----- 173 (476)
Q Consensus 99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p----- 173 (476)
.+..+.+.+.|+||+++|.+|+++.+|||+||..||..|+. ..||.||..+.. ..+.+|..+.+++..+..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~-~~~~~n~~l~~l~~~~~~~~~~~ 90 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI-QDLKINRQLDSMIQLCSKLRNLL 90 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC-SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc-ccccccHHHHHHHHHHHHHHHHH
Confidence 44556788999999999999997339999999999999987 789999999865 678999999998865532
Q ss_pred ------hhhhhHHHHHhccHHHHHH
Q 011864 174 ------DIDKYEEEELAFHEEERTR 192 (476)
Q Consensus 174 ------~c~~~ee~l~~fceeeq~~ 192 (476)
.|..|.+.+.+||+++++.
T Consensus 91 ~~~~~~~c~~h~~~~~lfc~~~~k~ 115 (117)
T 1jm7_B 91 HDNELSDLKEDKPRKSLFNDAGNKK 115 (117)
T ss_dssp HCCCCCC------------------
T ss_pred hhccccccccccccCccceeccccc
Confidence 3677888889999988754
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.48 E-value=1.9e-14 Score=115.42 Aligned_cols=68 Identities=21% Similarity=0.382 Sum_probs=60.0
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ..+.+|..+.++|..+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-AGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-CCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-hhCccCHHHHHHHHHHH
Confidence 5668999999999999997 89999999999999998657899999999876 56888999998886654
No 4
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.48 E-value=1.6e-14 Score=132.33 Aligned_cols=78 Identities=53% Similarity=1.069 Sum_probs=64.5
Q ss_pred cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (476)
Q Consensus 98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c 175 (476)
+....+.+.+.|+||++.|.+|+++++|||+||..||..|+..+...||.||..+.....+.+|..+.++|..+++..
T Consensus 46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp ----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred cchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 344556778999999999999998569999999999999999657899999999977678899999999999988854
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=117.83 Aligned_cols=71 Identities=21% Similarity=0.534 Sum_probs=60.3
Q ss_pred cccccccccccccccccceeecc-cCCccchhHHHhhhhc-CCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864 102 EIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRL-GNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~-CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (476)
.+.+.+.|+||+++|.+|++ ++ |||+||..||..|+.. +...||.||..+.....+.+|..+.+++..+..
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 35678999999999999997 78 9999999999999974 346999999998655778899999888866543
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=2e-13 Score=121.77 Aligned_cols=65 Identities=31% Similarity=0.635 Sum_probs=52.3
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (476)
.+++.|+||++.|.+|++ ++|||+||..||..|+. ....||.||.++.. ...+..+..++..++.
T Consensus 51 ~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS---KTYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC---EEECHHHHHHHHHHHT
T ss_pred cccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC---CCCccchhHHHHHHHH
Confidence 346789999999999997 89999999999999998 56899999998865 2345556666655543
No 7
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.43 E-value=7.1e-14 Score=119.32 Aligned_cols=78 Identities=27% Similarity=0.723 Sum_probs=65.9
Q ss_pred cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCC---CCCCCcchHHHHHhhcch
Q 011864 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR---SLRDDPNYDALISALYPD 174 (476)
Q Consensus 98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~---~l~~n~~L~~li~~l~p~ 174 (476)
..+..+.+.+.|+||+++|.+|+++++|||+||..||..|+.. ...||.||..+.... .+.+|..+.+++..+++.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 4455678899999999999999985599999999999999984 489999999987632 567889999999888886
Q ss_pred hh
Q 011864 175 ID 176 (476)
Q Consensus 175 c~ 176 (476)
..
T Consensus 86 ~~ 87 (108)
T 2ckl_A 86 LF 87 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.42 E-value=8.6e-14 Score=114.54 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=59.3
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
+.+.+.||||+++|.+||+ ++|||+||+.||..||. ...+||.|+.++.. ..+.+|..|.++|..+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE-SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeE-CCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh-HhcchHHHHHHHHHHHH
Confidence 4678999999999999997 88999999999999998 45899999999986 57889999988886554
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=4.8e-14 Score=119.12 Aligned_cols=73 Identities=21% Similarity=0.433 Sum_probs=61.0
Q ss_pred ecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHh
Q 011864 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISA 170 (476)
Q Consensus 97 ~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~ 170 (476)
......+.+.+.|+||+++|.+|+++++|||+||..||..|+......||.||..+.. ..+..+..+..++..
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL-RELVNCRWAEEVTQQ 85 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECTTHHHHHHH
T ss_pred ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH-HHhHhhHHHHHHHHH
Confidence 3445567889999999999999997799999999999999999555799999999876 567777777776643
No 10
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=6.6e-14 Score=127.11 Aligned_cols=74 Identities=23% Similarity=0.649 Sum_probs=65.2
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcch
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPD 174 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~ 174 (476)
+..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..++|.
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HHhCccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 3445678899999999999997 8999999999999999865568999999998755789999999999988875
No 11
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.39 E-value=1.8e-13 Score=116.22 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=60.5
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
.+.+.+.||||+++|.+||+ ++|||+||+.||..||. ...+||.|+.++.. ..+.+|..|.++|..+.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE-SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence 35678999999999999997 88999999999999998 56899999999986 67899999998886654
No 12
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.39 E-value=3.6e-13 Score=113.88 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=59.9
Q ss_pred cccccccccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
.+.+.+.||||+++|.+||+ ++|| |+||+.||..||.. ...||+|+.++.. ..+.+|..|.++|..+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM-DQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh-hhceEcHHHHHHHHHHH
Confidence 45678999999999999997 8999 99999999999984 5799999999986 67889999988886554
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=115.87 Aligned_cols=72 Identities=24% Similarity=0.596 Sum_probs=61.0
Q ss_pred ccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
.+..+.+.+.|+||++.|.+|+++++|||+||..||..|+. ....||.||..+.. ..+.+|..+.+++..+.
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSLN 86 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence 34456678999999999999998559999999999999998 45899999999886 66888988888886554
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=8.4e-14 Score=111.55 Aligned_cols=66 Identities=26% Similarity=0.750 Sum_probs=55.6
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcC------CCCCCCcccccccCCCCCCCcchHHHH
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG------NNECPACRTHCASRRSLRDDPNYDALI 168 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~------~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (476)
..+.+.+.|+||++.|.+|++ ++|||+||..||..|+... ...||.||..+.. ..+.+|..+.+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHhh
Confidence 345678999999999999997 8999999999999999842 5689999999886 5677887776553
No 15
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.34 E-value=2.3e-13 Score=117.31 Aligned_cols=72 Identities=28% Similarity=0.622 Sum_probs=59.6
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc------CCCCCCCcchHHHHHhhcch
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS------RRSLRDDPNYDALISALYPD 174 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~------~~~l~~n~~L~~li~~l~p~ 174 (476)
.+.+++.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ...+..|..+..++..++|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 35668999999999999997 79999999999999998656899999998864 24566777777777766663
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=4.8e-13 Score=108.00 Aligned_cols=67 Identities=31% Similarity=0.795 Sum_probs=56.0
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhcC-----CCCCCCcccccccCCCCCCCcchHHHH
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCASRRSLRDDPNYDALI 168 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-----~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (476)
...+.+.+.|+||++.|.+|+. ++|||+||..||..|+... ...||.||..+.. ..+.+|..+.+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v 84 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSSC
T ss_pred HHhCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHhh
Confidence 3446678899999999999996 8999999999999999852 5789999999886 5677777776554
No 17
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.33 E-value=5.8e-13 Score=115.56 Aligned_cols=76 Identities=29% Similarity=0.505 Sum_probs=63.6
Q ss_pred cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (476)
Q Consensus 98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c 175 (476)
..+..+.+.+.|+||++++.+|++ ++|||+||..||..|+......||.||..+.. ..+.++..+..++..+...|
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEEC
T ss_pred hhccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHccceeEC
Confidence 355677889999999999999997 89999999999999998655699999999886 55667777888887766444
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=104.01 Aligned_cols=54 Identities=35% Similarity=0.864 Sum_probs=47.6
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+..+.+.+.|+||++.|.+|+++++|||+||..||..|+.. ...||.||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 34567789999999999999985699999999999999984 5899999998876
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.3e-13 Score=107.29 Aligned_cols=67 Identities=27% Similarity=0.849 Sum_probs=56.3
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhc-----CCCCCCCcccccccCCCCCCCcchHHHH
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCASRRSLRDDPNYDALI 168 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-----~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (476)
...+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. +...||.||..+.. ..+.+|..+.+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v 84 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHhh
Confidence 3446678899999999999997 899999999999999974 25799999999886 6677887776554
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=103.80 Aligned_cols=55 Identities=25% Similarity=0.674 Sum_probs=46.3
Q ss_pred ccccccccccccccccccceeecc-cCCccchhHHHhhhhcC-CCCCCCcccccccCC
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRLG-NNECPACRTHCASRR 156 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~-CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~~~ 156 (476)
..+.+.+.|+||+++|.+|++ ++ |||+||..||..|+... ...||.||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred ccCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 345678999999999999997 78 99999999999999843 368999999765433
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=1.2e-12 Score=127.80 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=59.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (476)
...+.||||+++|.+||+ ++|||+||..||..|+..+..+||+|+.++.. ..+.+|..+.++|..+..
T Consensus 206 ~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~-~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-GGCEECHHHHHHHHHHHT
T ss_pred CcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCch-hcCcccHHHHHHHHHHHH
Confidence 457899999999999997 89999999999999998655569999999976 678999999999876653
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=105.35 Aligned_cols=57 Identities=19% Similarity=0.492 Sum_probs=47.8
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcch
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNY 164 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L 164 (476)
...+.|+||++.|.+|+. ++|||+||..||..|+. ....||+||..+. ..+.++..+
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~--~~~~~~~~l 69 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR-ATPRCYICDQPTG--GIFNPAKEL 69 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC--SCCEECHHH
T ss_pred CCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc--ccCCcHHHH
Confidence 446799999999999996 99999999999999998 4579999999886 345555433
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=100.45 Aligned_cols=53 Identities=23% Similarity=0.650 Sum_probs=46.6
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345678899999999999997 89999999999999996456789999998875
No 24
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=108.97 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=57.5
Q ss_pred ccccccccccccccccceeec-ccCCccchhHHHhhhhcC-----CCCCCC--cccc-cccCCCCCCCcchHHHHHhhcc
Q 011864 103 IRKDVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLG-----NNECPA--CRTH-CASRRSLRDDPNYDALISALYP 173 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~-~CgH~FC~~CI~~~~~~~-----~~~CP~--CR~~-~~~~~~l~~n~~L~~li~~l~p 173 (476)
....+.||||+++|.+||+ + .|||+||..||..||..+ ...||+ |+.. +.. ..+.+|..|..+|..+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-SDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-GGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-hhCcCCHHHHHHHHHHHH
Confidence 3567899999999999997 6 499999999999999842 468999 9877 554 678899999988876643
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=1.4e-12 Score=111.32 Aligned_cols=71 Identities=31% Similarity=0.758 Sum_probs=59.1
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcC--CCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCASRRSLRDDPNYDALISALYP 173 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (476)
..+.+.+.|+||++.+.+|++ ++|||+||..||..|+... ...||.||..+.. ..+.++..+.+++..+..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHH
T ss_pred HhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHH
Confidence 345667899999999999997 8999999999999999843 2489999999886 667888888877766554
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.25 E-value=3.1e-12 Score=119.42 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=61.0
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
..+...+.||||+++|.+||+ ++|||+||..||..||..+..+||.|+.++.. ..+.+|..|.++|..+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-hhCcchHHHHHHHHHHH
Confidence 446788999999999999997 89999999999999998543479999999986 57999999999987654
No 27
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=116.58 Aligned_cols=83 Identities=19% Similarity=0.417 Sum_probs=61.4
Q ss_pred CCccee-cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccC--------CCCCCCc
Q 011864 92 KPEFVF-VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR--------RSLRDDP 162 (476)
Q Consensus 92 ~~e~~~-~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~--------~~l~~n~ 162 (476)
.+++.. .....+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+... ..+.++.
T Consensus 16 ~~g~~~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~ 94 (141)
T 3knv_A 16 QPGFSKTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDN 94 (141)
T ss_dssp CCSBCGGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECH
T ss_pred CCCcchhhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccH
Confidence 344433 344678899999999999999997 899999999999999986656999999975321 1233555
Q ss_pred chHHHHHhhcchh
Q 011864 163 NYDALISALYPDI 175 (476)
Q Consensus 163 ~L~~li~~l~p~c 175 (476)
.+...|..+...|
T Consensus 95 ~~~~~i~~L~v~C 107 (141)
T 3knv_A 95 AARREVESLPAVC 107 (141)
T ss_dssp HHHHHHHTSEEEC
T ss_pred HHHHHHccccccc
Confidence 5666665554433
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.5e-12 Score=98.73 Aligned_cols=54 Identities=37% Similarity=0.894 Sum_probs=46.6
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~ 154 (476)
...+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||.||..+..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3446678899999999999997 799999999999999972 45689999998865
No 29
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.23 E-value=3e-12 Score=110.43 Aligned_cols=74 Identities=24% Similarity=0.578 Sum_probs=59.2
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c 175 (476)
..+.+.+.|+||++.|.+|+. ++|||+||..||..|+......||.||..+.......++..+..++..+...|
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C 91 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKC 91 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEEC
T ss_pred HhccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCC
Confidence 345678899999999999997 89999999999999998656799999999987444455666666665554433
No 30
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.20 E-value=5.8e-12 Score=115.68 Aligned_cols=79 Identities=28% Similarity=0.497 Sum_probs=64.4
Q ss_pred cceecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864 94 EFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (476)
Q Consensus 94 e~~~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (476)
++...++..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.. ..+.++..+..+|..+..
T Consensus 6 g~~~~~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 6 GYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMV 83 (170)
T ss_dssp CBCSEESSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEE
T ss_pred CCChhhccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHhhccc
Confidence 3444466678899999999999999997 89999999999999998555699999999886 446677777777766654
Q ss_pred h
Q 011864 174 D 174 (476)
Q Consensus 174 ~ 174 (476)
.
T Consensus 84 ~ 84 (170)
T 3hcs_A 84 K 84 (170)
T ss_dssp E
T ss_pred C
Confidence 3
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=100.72 Aligned_cols=53 Identities=26% Similarity=0.770 Sum_probs=45.9
Q ss_pred cccccccccccccccccc----ceeecccCCccchhHHHhhhhcC--CCCCCCccccccc
Q 011864 101 PEIRKDVQCPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCAS 154 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~----Pv~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~~~~~ 154 (476)
..+.+.+.|+||++.|.+ |+. ++|||+||..||..|+... ...||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345678899999999998 886 8999999999999999853 4789999998765
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=94.81 Aligned_cols=48 Identities=40% Similarity=0.975 Sum_probs=42.0
Q ss_pred cccccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC 148 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~C 148 (476)
...+.+.+.|+||++.|.+|+. ++|||+||..||..|+.. ....||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456778999999999999997 799999999999999984 45689998
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.16 E-value=1.4e-11 Score=96.54 Aligned_cols=50 Identities=34% Similarity=0.826 Sum_probs=43.4
Q ss_pred cccccccccccccccce------eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv------~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+.+.|+||++.+.+|+ .+++|||.||..||..|+.. ...||.||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 45778999999999882 34999999999999999984 4799999999886
No 34
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=96.81 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=43.6
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+.+.|+||++.+.+|+. ++|||.||..||..|+. ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 346789999999999997 89999999999999998 44899999998865
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.6e-11 Score=95.15 Aligned_cols=49 Identities=31% Similarity=0.698 Sum_probs=42.7
Q ss_pred ccccccccc-ccccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLG-IIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~-~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
++.|+||++ .+.+|+ .+++|||+||..||..|+..+...||.||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 578999999 999994 2489999999999999987566789999998875
No 36
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.2e-11 Score=119.43 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=59.0
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhc-CCCCCCC--cccccccCCCCCCCcchHHHHHh
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA--CRTHCASRRSLRDDPNYDALISA 170 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~--CR~~~~~~~~l~~n~~L~~li~~ 170 (476)
......+.||||+.+|.+||+++.|||+||..||..||.. +...||+ |+..+.. ..+.+|..|.+++..
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~-~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM-RDFVRDPIMELRCKI 247 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG-GGEEECHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch-hhCCcCHHHHHHHHH
Confidence 3457789999999999999986699999999999999984 3468999 9998876 678999988887743
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=94.88 Aligned_cols=50 Identities=34% Similarity=0.809 Sum_probs=43.5
Q ss_pred ccccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 103 IRKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+.+.+.|+||++.|.+| + +++|||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 45678999999999988 5 4999999999999999984 5799999998763
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=90.25 Aligned_cols=46 Identities=30% Similarity=0.865 Sum_probs=40.4
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCc
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC 148 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~C 148 (476)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45668899999999999996 899999999999999763 55789998
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09 E-value=6.3e-11 Score=94.78 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=42.8
Q ss_pred cccccccccccccccce--eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKTR--TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv--~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...+.|+||++.|..+. .+++|+|.||..||..|+. ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 45678999999998663 3479999999999999998 45899999999887
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.07 E-value=3.2e-11 Score=92.28 Aligned_cols=49 Identities=35% Similarity=0.829 Sum_probs=42.4
Q ss_pred ccccccccccccccce------eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv------~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+.+.|+||++.+.+|+ .+++|||.||..||..|+.. ...||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 3578999999999872 34899999999999999984 5799999998875
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.06 E-value=5e-11 Score=92.78 Aligned_cols=49 Identities=37% Similarity=0.828 Sum_probs=42.8
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
....|+||++.+.+|+.+++|||.||..||..|+.. ...||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 356899999999998656999999999999999984 4899999998764
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.06 E-value=1.2e-10 Score=94.47 Aligned_cols=53 Identities=26% Similarity=0.635 Sum_probs=43.4
Q ss_pred cccccccccccccccc--cceeecc--cCCccchhHHHhhhhcCCCCCCCcccccccC
Q 011864 102 EIRKDVQCPICLGIIK--KTRTVME--CLHRFCRECIDKSMRLGNNECPACRTHCASR 155 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~--~Pv~i~~--CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~ 155 (476)
.+.+++.||||++.+. ++++ ++ |||.||..||..++......||.||..+...
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~-~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINF-FPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTC-CSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccccCCcCCccCccCccccccc-cccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 3567889999999885 3443 55 9999999999999875668999999998763
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=8.8e-11 Score=93.43 Aligned_cols=52 Identities=27% Similarity=0.710 Sum_probs=43.5
Q ss_pred cccccccccccccccccc--eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 102 EIRKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...+...|+||++.|..+ +..++|+|.||..||..|+.. ...||+||..+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 345678899999999877 334899999999999999984 4799999998764
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6e-11 Score=92.95 Aligned_cols=50 Identities=30% Similarity=0.789 Sum_probs=44.1
Q ss_pred cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+.+.+.|+||++.+.+ +. ++|||.||..||..|+. ....||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 45567899999999999 64 99999999999999998 66899999998875
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=1.2e-10 Score=86.76 Aligned_cols=48 Identities=31% Similarity=0.803 Sum_probs=40.7
Q ss_pred ccccccccccccccc---ceeecc-cCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 104 RKDVQCPICLGIIKK---TRTVME-CLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~---Pv~i~~-CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
.+...|+||++.|.. ++. ++ |||.||..||..|+. ....||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 456789999999987 565 55 999999999999998 4689999998764
No 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=90.00 Aligned_cols=49 Identities=31% Similarity=0.829 Sum_probs=40.5
Q ss_pred ccccccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
....|+||++.|. .++.+++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3568999999885 23445899999999999999984 4789999998765
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=91.65 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=42.8
Q ss_pred cccccccccccccccccee--ecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 103 IRKDVQCPICLGIIKKTRT--VMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~--i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+.....|+||++.|..+.. +++|+|.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4557789999999987643 3599999999999999984 4699999998865
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=95.43 Aligned_cols=50 Identities=26% Similarity=0.727 Sum_probs=42.3
Q ss_pred cccccccccccccccc---ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 103 IRKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
......|+||++.|.. ++. ++|||.||..||..|+. ....||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 4567889999998876 554 89999999999999998 55799999998754
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.98 E-value=2.2e-10 Score=85.31 Aligned_cols=47 Identities=32% Similarity=0.766 Sum_probs=39.9
Q ss_pred ccccccccccccc---ceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 106 DVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
...|+||++.|.+ ++.+++|||.||..||..|+... ..||+||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 5689999999865 34459999999999999999855 89999998764
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.94 E-value=4.6e-10 Score=96.12 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=41.2
Q ss_pred cccccccccccccce-----------------eecccCCccchhHHHhhhhc----CCCCCCCcccccccC
Q 011864 106 DVQCPICLGIIKKTR-----------------TVMECLHRFCRECIDKSMRL----GNNECPACRTHCASR 155 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv-----------------~i~~CgH~FC~~CI~~~~~~----~~~~CP~CR~~~~~~ 155 (476)
+..|+||++.|..|+ .+++|+|.||..||..|+.. ....||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997654 14899999999999999952 456999999988763
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3e-10 Score=85.84 Aligned_cols=45 Identities=27% Similarity=0.750 Sum_probs=39.6
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+.+.|+||++.|.+|+. ++|||+||..||..| ...||.||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEE-cCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 46789999999999996 999999999999873 4689999998765
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=6.5e-10 Score=96.63 Aligned_cols=49 Identities=35% Similarity=0.883 Sum_probs=43.6
Q ss_pred cccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+.+.|+||++.|.+| +. ++|||+||..||..|+. ....||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3568999999999998 64 99999999999999998 45799999998876
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.88 E-value=2.6e-10 Score=91.03 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=43.2
Q ss_pred cccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+..+.+.+.|+||++.+.+|++ ++|||. ||..|+..| ..||.||..+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3456678899999999999997 899999 999999988 679999998865
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=87.90 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=40.0
Q ss_pred cccccccccccccc--------------ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKK--------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~--------------Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
++..|+||++.|.. ++.+++|+|.||..||..|+. ...+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 35679999998876 445456999999999999998 45799999998754
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=2.5e-09 Score=110.47 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=45.8
Q ss_pred ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCC
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR 156 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~ 156 (476)
......|+||++.+.+|+. ++|||.||..||..|+......||.||..+....
T Consensus 329 ~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred cCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3445799999999999996 9999999999999999855689999999887633
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.7e-09 Score=84.35 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=41.7
Q ss_pred cccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 100 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...+.+.+.|+||++.+.+|++ ++|||. ||..|+.. ...||.||..+..
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HHcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3445667899999999999996 999999 99999964 2689999998875
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.72 E-value=6.6e-09 Score=88.95 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=41.1
Q ss_pred ccccccccccccccc-----------------eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 105 KDVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 105 e~l~C~ICl~~~~~P-----------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
+...|+||++.|..+ +.+++|+|.||..||..|+. ...+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 457899999998865 55589999999999999998 4689999999764
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.69 E-value=3.4e-09 Score=92.05 Aligned_cols=49 Identities=35% Similarity=0.866 Sum_probs=43.2
Q ss_pred cccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+...|+||++.|..| + +++|||.||..||..|+. ....||.||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLK-NANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence 4578899999999987 5 489999999999999998 45799999998876
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.65 E-value=1e-08 Score=79.59 Aligned_cols=48 Identities=29% Similarity=0.521 Sum_probs=41.9
Q ss_pred ccccccccccccccceeec--ccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~--~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+...|+||++.+.+++. + ||||. ||..|+..|+. ....||.||.++..
T Consensus 7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence 45689999999999986 5 99999 89999999997 45789999998754
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=7.1e-09 Score=83.95 Aligned_cols=48 Identities=21% Similarity=0.623 Sum_probs=41.8
Q ss_pred ccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
..+.+...|+||++.+.+|+. +||||. ||..|+..|. .||.||..+..
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred HcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 345667899999999999997 899999 9999998763 79999998876
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.59 E-value=1.9e-08 Score=77.77 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=40.8
Q ss_pred cccccccccccccceeec--ccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~--~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
...|+||++.+.+++. + ||||. ||..|+..|+. ....||.||.++..
T Consensus 7 ~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 4579999999999975 5 99998 99999999987 44789999998764
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.58 E-value=1.3e-08 Score=78.63 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=44.1
Q ss_pred cccccccccccccceeec-ccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCC
Q 011864 106 DVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD 161 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~-~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n 161 (476)
.+.||||++++.+||. + +|||+||+.||.+|+.. ...||+++.++.. .++.++
T Consensus 3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~-~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI-EEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG-GGCEEC
T ss_pred eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh-hhcEEC
Confidence 4789999999999997 6 99999999999999984 3679999998876 334433
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.50 E-value=1.4e-08 Score=88.42 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=0.5
Q ss_pred cccccccccccccc-----------------eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864 106 DVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~~P-----------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~ 153 (476)
...|+||++.|..+ +..++|+|.||..||..|+. ...+||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 46899999998763 33368999999999999998 4689999999764
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.47 E-value=2.8e-08 Score=101.56 Aligned_cols=50 Identities=24% Similarity=0.656 Sum_probs=43.8
Q ss_pred ccccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.+..+.+.+.|+||++.+.+|++ ++|||. ||..|+..| ..||.||.++..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34456778999999999999997 899999 999999987 579999998865
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=8.9e-08 Score=79.42 Aligned_cols=47 Identities=28% Similarity=0.750 Sum_probs=38.7
Q ss_pred ccccccccccccccceee--cccCCccchhHHHhhhhc----C---CCCCCC--cccc
Q 011864 105 KDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRL----G---NNECPA--CRTH 151 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i--~~CgH~FC~~CI~~~~~~----~---~~~CP~--CR~~ 151 (476)
+.+.|+||++.+..|+++ .+|||.||..||..+|.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 367899999999988753 379999999999999863 2 248999 9987
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.4e-07 Score=74.20 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=38.4
Q ss_pred ccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+...|+||++.+.+++. +||||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 35689999999999996 999999 99999984 3689999998875
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.7e-07 Score=74.19 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=41.6
Q ss_pred cccccccccccc--cceeecccC-----CccchhHHHhhhhcC-CCCCCCcccccccCCCC
Q 011864 106 DVQCPICLGIIK--KTRTVMECL-----HRFCRECIDKSMRLG-NNECPACRTHCASRRSL 158 (476)
Q Consensus 106 ~l~C~ICl~~~~--~Pv~i~~Cg-----H~FC~~CI~~~~~~~-~~~CP~CR~~~~~~~~l 158 (476)
...|+||++.+. +++ ++||. |.|+..||.+|+... ...||+||..+.....+
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 557999998774 566 48996 999999999999853 36999999988764333
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=1.4e-06 Score=69.91 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=41.0
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcC-CCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~ 154 (476)
...|+||..++..-..+..|+|.|+..||.+||+.. ...||+|+..+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 457999999998666667899999999999999843 3789999987653
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.08 E-value=1.9e-06 Score=72.49 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.9
Q ss_pred cccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 108 ~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.|++|.-.+..-..++||.|.||+.|+..|.+.+.+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 69999988887766799999999999999998778999999998875
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.50 E-value=2e-05 Score=80.00 Aligned_cols=49 Identities=16% Similarity=0.569 Sum_probs=37.9
Q ss_pred ccccccccccccc----cee-e--cccCCccchhHHHhhhhcC----------CCCCCCccccccc
Q 011864 106 DVQCPICLGIIKK----TRT-V--MECLHRFCRECIDKSMRLG----------NNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~----Pv~-i--~~CgH~FC~~CI~~~~~~~----------~~~CP~CR~~~~~ 154 (476)
...|+||+..+.. |.. + ..|+|.|+..||.+|+... .+.||.|+.+++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4579999998875 311 1 3799999999999999731 1479999998875
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.42 E-value=9.5e-05 Score=56.61 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=38.8
Q ss_pred cccccccccccccceeecccC--C---ccchhHHHhhhhc-CCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECL--H---RFCRECIDKSMRL-GNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~Cg--H---~FC~~CI~~~~~~-~~~~CP~CR~~~~~ 154 (476)
...|.||+.....+. +.||. + .|+..||.+|+.. ++..||+|+..+..
T Consensus 6 ~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457999998777776 48865 4 8999999999974 46799999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=63.86 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=41.4
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcC-CCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~ 154 (476)
...|.||..++..-+.+..|+|.|+..|+..|++.. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 567999999999877777799999999999999843 4599999997654
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.92 E-value=0.0051 Score=69.87 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=57.7
Q ss_pred ccccccccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864 103 IRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (476)
+.+++.|||-++++.+||. ++.| ++|-+.+|.+|+.. ..+||.=|.+++. ..+.||..|...|....
T Consensus 888 iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL-EDVTPNEELRQKILCFK 955 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc-ccccccHHHHHHHHHHH
Confidence 3568999999999999996 8997 69999999999984 5799999999986 56889998888886554
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.30 E-value=0.0064 Score=50.31 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=43.8
Q ss_pred ccccccccccc-ccccee-ecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchhhhh-HHH
Q 011864 105 KDVQCPICLGI-IKKTRT-VMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKY-EEE 181 (476)
Q Consensus 105 e~l~C~ICl~~-~~~Pv~-i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c~~~-ee~ 181 (476)
+++.|+||.+. +..|+. .+.|+|.||..|+..+....... . +..+.. .+. ...+ -...|..| .+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~--~h~l~~--~~~-~~~~------~~~~C~~H~~e~ 69 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-T--GHRLIE--PIP-DSHI------RGLMCLEHEDEK 69 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-T--TCCBSS--CCC-SCCS------SCCCCSSCSSSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-C--CCeeec--ccc-ccCc------cCCcCcCcCCCc
Confidence 35789999975 667763 28999999999999844311110 0 111110 000 0000 12358888 477
Q ss_pred HHhccHHHHH
Q 011864 182 ELAFHEEERT 191 (476)
Q Consensus 182 l~~fceeeq~ 191 (476)
+.+||.+++.
T Consensus 70 l~~fC~~~~~ 79 (101)
T 2jun_A 70 VNMYCVTDDQ 79 (101)
T ss_dssp CCEEETTTTE
T ss_pred ceEECCCCCC
Confidence 8899987653
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.23 E-value=0.054 Score=44.89 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=39.9
Q ss_pred ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
..+---+.|-.|.-....-|. -..|.+|..|+..++. .+..||+|..++..
T Consensus 23 ~s~~G~~nCKsCWf~~k~LV~--C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKGLVE--CNNHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp CCCSCCCCCCSSCSCCSSEEE--CSSCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred ccccCcccChhhccccCCeee--ecchhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 344556789999887776543 3459999999999988 66899999998875
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.036 Score=56.75 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=50.3
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhh----cCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISAL 171 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l 171 (476)
.-.+.|||-...+..|+....|.|.-|.+- ..|+. .....||+|.+.+.. .++..+..+..++...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHHHhc
Confidence 346899999999999999899999977764 33332 356799999998876 6677777777766443
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.80 E-value=0.079 Score=54.06 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=50.2
Q ss_pred cccccccccccccccceeecccCCccchhHHHhhhh----cCCCCCCCcccccccCCCCCCCcchHHHHHh
Q 011864 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISA 170 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~ 170 (476)
.-.+.|||-...+..|+....|.|.-|.+- ..|+. .+...||+|.+.+.. .++..+..+..++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence 447899999999999998899999977763 33443 345799999998876 567777777777644
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.85 E-value=0.53 Score=38.59 Aligned_cols=49 Identities=31% Similarity=0.619 Sum_probs=38.1
Q ss_pred ccccccccccccc-----c-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~-----P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-.|.||.+.+-- + |.+-.|+-..|..|+.--.+.++..||.|.+.+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4579999987431 1 33456888999999988777788999999998863
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.79 E-value=1 Score=36.26 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=32.6
Q ss_pred ccccccccccccccceeeccc----CCccchhHHHhhhhc----CCCCCCCc
Q 011864 105 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL----GNNECPAC 148 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~C----gH~FC~~CI~~~~~~----~~~~CP~C 148 (476)
..+.|.+|.+.+.+..+ ..| .|.||..|-...++. ..-.||.=
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 46789999999998865 445 699999999998872 12357653
No 80
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=82.71 E-value=0.77 Score=39.66 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=61.1
Q ss_pred EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccc-eEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011864 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 450 (476)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (476)
|.|++-......+|.|.+--.-...++||-++.. +.+.+++ |=+|| .+. . |+. ..
T Consensus 32 IPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V-n~~---~-------p~~--------~~ 92 (119)
T 3h9d_A 32 LPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT-NDT---V-------LPS--------SA 92 (119)
T ss_dssp EEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE-TTE---E-------CCT--------TS
T ss_pred EEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE-CCc---C-------CCc--------cc
Confidence 7888888888999999999889999999999877 7788777 44444 211 1 111 36
Q ss_pred ccccccccccCCCCcchhhhhhh
Q 011864 451 TLAGLRVNHTSNTDHLILAYRQK 473 (476)
Q Consensus 451 ~l~~l~~~~~~~~~~l~~~y~~k 473 (476)
||++|+..|-...|.|||.|..-
T Consensus 93 ~m~~lY~~~kd~DGfLyv~Ys~e 115 (119)
T 3h9d_A 93 QMADIYSKYKDEDGFLYMKYSGE 115 (119)
T ss_dssp BHHHHHHHHCCTTSCEEEEEECC
T ss_pred hHHHHHHHcCCCCCeEEEEEecc
Confidence 89999999988899999999753
No 81
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=79.93 E-value=1.5 Score=37.78 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=62.6
Q ss_pred hccCCceeEEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccceEEEEEecccccCCCCCCCCCChhhh
Q 011864 369 QENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQL 443 (476)
Q Consensus 369 ~~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 443 (476)
.-.-+. |.|++-......+|.|.+--.-...++||-++.. +.+.+++- ||+--+. .+ |+.
T Consensus 25 ~kyP~r--iPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~a-lFl~Vn~---~~------p~~--- 89 (118)
T 3rui_B 25 DRFKNR--IPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKA-IFIFVND---TL------PPT--- 89 (118)
T ss_dssp HHCSSE--EEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCC-EEEEBTT---BC------CCT---
T ss_pred HhCCCc--eEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCcc-EEEEECC---cc------CCc---
Confidence 334445 7787777888899999999888999999999877 77777763 3332111 11 222
Q ss_pred hhcccccccccccccccCCCCcchhhhhhh
Q 011864 444 QILEGQETLAGLRVNHTSNTDHLILAYRQK 473 (476)
Q Consensus 444 ~~l~~~~~l~~l~~~~~~~~~~l~~~y~~k 473 (476)
..||++|+..|-...|.|||.|..-
T Consensus 90 -----~~~m~~lY~~~kdeDGfLyv~Ys~~ 114 (118)
T 3rui_B 90 -----AALMSAIYQEHKDKDGFLYVTYSGE 114 (118)
T ss_dssp -----TSBHHHHHHHHCCTTSCEEEEEEEC
T ss_pred -----cchHHHHHHHcCCCCCeEEEEEecc
Confidence 2599999999988999999999743
No 82
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=75.44 E-value=2 Score=37.31 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=62.0
Q ss_pred cCCceeEEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccce-EEEEEecccccCCCCCCCCCChhhhh
Q 011864 371 NNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEEV-EILMVKERLDAKGNQSTPIPTTDQLQ 444 (476)
Q Consensus 371 ~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~-e~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (476)
.-+. |.|++-......+|.|.+-=.--..++||-++.. +.+.+++- =+|| .. .+ |+.
T Consensus 33 yP~r--IPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V-nn----~l------Ps~---- 95 (125)
T 3m95_A 33 YPDR--VPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV-NN----VI------PPT---- 95 (125)
T ss_dssp CTTE--EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB-TT----BC------CCT----
T ss_pred CCCe--EEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE-CC----cc------CCc----
Confidence 4445 7888878888899999998888999999999877 77888773 3332 21 11 112
Q ss_pred hcccccccccccccccCCCCcchhhhhhh
Q 011864 445 ILEGQETLAGLRVNHTSNTDHLILAYRQK 473 (476)
Q Consensus 445 ~l~~~~~l~~l~~~~~~~~~~l~~~y~~k 473 (476)
..||++|+..|-+..|-|||.|..-
T Consensus 96 ----s~~m~~lY~~~kdeDGfLY~~Ys~e 120 (125)
T 3m95_A 96 ----SATMGSLYQEHHDEDFFLYIAFSDE 120 (125)
T ss_dssp ----TSBHHHHHHHHCCTTSCEEEEEESS
T ss_pred ----cchHHHHHHHcCCCCCeEEEEecCc
Confidence 2689999999988999999999754
No 83
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.42 E-value=1.6 Score=33.12 Aligned_cols=41 Identities=27% Similarity=0.609 Sum_probs=29.9
Q ss_pred ccccccccccccc--eeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864 107 VQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPAC 148 (476)
Q Consensus 107 l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~~~~~CP~C 148 (476)
..|--|...|... +....|++.||..|= -++......||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 3599999888543 345789999999994 3334456789988
No 84
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=70.99 E-value=3 Score=35.21 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=56.8
Q ss_pred EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011864 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 451 (476)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (476)
|.|.+-......+|-|.+-=.-...++||-++.. +.+.+++ =||+.-+. .+ |+. ..|
T Consensus 28 IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~-alfl~vn~---~~------p~~--------~~~ 89 (110)
T 2r2q_A 28 VPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPED-ALFFFVNN---TI------PPT--------SAT 89 (110)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTS-CCEEEBTT---BC------CCT--------TSB
T ss_pred eEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCC-cEEEEECC---Ee------cCc--------cCh
Confidence 7777777777889999998878888999999986 6666665 22333221 11 111 358
Q ss_pred cccccccccCCCCcchhhhh
Q 011864 452 LAGLRVNHTSNTDHLILAYR 471 (476)
Q Consensus 452 l~~l~~~~~~~~~~l~~~y~ 471 (476)
|++|+..|-+..|.|+|.|.
T Consensus 90 m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 90 MGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp HHHHHHHHCCTTSCEEEEEE
T ss_pred HHHHHHHcCCCCCEEEEEEe
Confidence 99999999888999999995
No 85
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=66.95 E-value=3.6 Score=35.16 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=57.8
Q ss_pred EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011864 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 451 (476)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (476)
|.|.+=......+|-|.+--.-...++||-++.. +.+.+++- ||+.-+. . + |+. ..|
T Consensus 29 IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~a-lfl~vn~--~-~------p~~--------~~~ 90 (117)
T 1eo6_A 29 VPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKA-IFLFVDK--T-V------PQS--------SLT 90 (117)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSC-CEEEBTT--B-C------CCT--------TSB
T ss_pred EEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCc-EEEEECC--E-e------cCc--------cch
Confidence 7777777778889999988777888999999986 66666652 3333221 1 1 111 358
Q ss_pred cccccccccCCCCcchhhhhhh
Q 011864 452 LAGLRVNHTSNTDHLILAYRQK 473 (476)
Q Consensus 452 l~~l~~~~~~~~~~l~~~y~~k 473 (476)
|++|+..|-+..|.|+|.|..-
T Consensus 91 m~~LY~~~kd~DGfLyi~Ys~~ 112 (117)
T 1eo6_A 91 MGQLYEKEKDEDGFLYVAYSGE 112 (117)
T ss_dssp HHHHHHHHCCTTSCEEEEEECC
T ss_pred HHHHHHHhCCCCCEEEEEEeCC
Confidence 9999999988899999999753
No 86
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=64.46 E-value=3.8 Score=35.80 Aligned_cols=79 Identities=10% Similarity=0.225 Sum_probs=60.3
Q ss_pred EEEEEeecCCCC-CCCCCCCccccCCCchhhhhhc-----cCCCccceEEEE-EecccccCCCCCCCCCChhhhhhcccc
Q 011864 377 VRLMLVSADTQC-APSLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILM-VKERLDAKGNQSTPIPTTDQLQILEGQ 449 (476)
Q Consensus 377 ~~l~l~~~d~~~-~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~e~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (476)
|.|.+=...... +|.|.+--.--..++||-++.. +.+.+++- ||+ .-+.. . |+ -.
T Consensus 36 IPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~a-lFl~~vn~~--~-------p~--------~~ 97 (130)
T 2zjd_A 36 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQA-FFLLVNGHS--M-------VS--------VS 97 (130)
T ss_dssp EEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCC-EEEEETTTE--E-------CC--------TT
T ss_pred eEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCce-EEEEEECCc--c-------CC--------cc
Confidence 788777888888 9999998888999999999988 67777763 444 32211 1 11 13
Q ss_pred cccccccccccCCCCcchhhhhhh
Q 011864 450 ETLAGLRVNHTSNTDHLILAYRQK 473 (476)
Q Consensus 450 ~~l~~l~~~~~~~~~~l~~~y~~k 473 (476)
.||++|+..|-...|.|||.|..-
T Consensus 98 ~~m~~lY~~~kdeDGfLyv~Ys~e 121 (130)
T 2zjd_A 98 TPISEVYESEKDEDGFLYMVYASQ 121 (130)
T ss_dssp SBHHHHHHHHCCTTSCEEEEEEEH
T ss_pred chHHHHHHHhCCCCCEEEEEEeCC
Confidence 679999999988899999999743
No 87
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.00 E-value=4.7 Score=36.15 Aligned_cols=44 Identities=23% Similarity=0.592 Sum_probs=30.3
Q ss_pred cccccccccccc----cceeecccCCccchhHHHhhhh-cCCCCCCCccc
Q 011864 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR-LGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~----~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~CR~ 150 (476)
.-.|.+|...|. ..+.+..|.|.+|..|-. |.. .....|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 458999999763 335567899999999973 322 23346777765
No 88
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.88 E-value=17 Score=31.75 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=28.7
Q ss_pred cccccccccccc----cceeecccCCccchhHHHhhhh---cCCCCCCCccc
Q 011864 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~----~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~ 150 (476)
.-.|.+|...|. ..+.+..|.|.+|..|-..... .....|-+|+.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 447999999773 2345677889998888653311 11235666665
No 89
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.86 E-value=3.1 Score=35.11 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=21.8
Q ss_pred cccccceeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864 114 GIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (476)
Q Consensus 114 ~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~ 152 (476)
.++..|..+..||+.|+ .-+. ....||.|+..-
T Consensus 62 ~L~v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEW 94 (105)
T ss_dssp EEEECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCC
T ss_pred EEEEECcChhhCcCeec-----ccCC-CCCCCcCCCCCc
Confidence 34455666789999992 1222 457899998743
No 90
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=58.07 E-value=2 Score=34.45 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.6
Q ss_pred cccccccccc-----cceeecccCCccchhHHHhh
Q 011864 108 QCPICLGIIK-----KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 108 ~C~ICl~~~~-----~Pv~i~~CgH~FC~~CI~~~ 137 (476)
-||-|...+. .+|.+..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998877553 23555569999999999888
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.43 E-value=37 Score=28.98 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=24.2
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhh
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
...|.+|...|. .-..+-.||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 347999998765 33455789999999997654
No 92
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=56.98 E-value=9.7 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=32.3
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhc---CCCCCCCcccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---GNNECPACRTH 151 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~---~~~~CP~CR~~ 151 (476)
...|.||.+- .+-+..-.|...|+..|+...+.. +...||.|...
T Consensus 12 ~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4469999864 233444568999999999877652 34589999764
No 93
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=54.58 E-value=4.5 Score=45.22 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=39.0
Q ss_pred cccccccccccccccc---------eeecccCCcc--------------------chhHHHhhhhc-------CCCCCCC
Q 011864 104 RKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPA 147 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P---------v~i~~CgH~F--------------------C~~CI~~~~~~-------~~~~CP~ 147 (476)
.+.-.|+-|+.-+.+| +.++.||..| |..|-..+-.- ....||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 4567899999988776 4568899888 99999888641 2358999
Q ss_pred ccccccc
Q 011864 148 CRTHCAS 154 (476)
Q Consensus 148 CR~~~~~ 154 (476)
|.-.+..
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9876644
No 94
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.34 E-value=2 Score=32.41 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=24.6
Q ss_pred ccccccccccccc-----eeecc--cCCccchhHHHhhhh
Q 011864 107 VQCPICLGIIKKT-----RTVME--CLHRFCRECIDKSMR 139 (476)
Q Consensus 107 l~C~ICl~~~~~P-----v~i~~--CgH~FC~~CI~~~~~ 139 (476)
-.||-|...+... ++... |++.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 4699998877643 44344 899999999988765
No 95
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=54.17 E-value=2.8 Score=33.23 Aligned_cols=34 Identities=32% Similarity=0.637 Sum_probs=24.5
Q ss_pred cccccc--cccccc-----cceeec-----ccCCccchhHHHhhhh
Q 011864 106 DVQCPI--CLGIIK-----KTRTVM-----ECLHRFCRECIDKSMR 139 (476)
Q Consensus 106 ~l~C~I--Cl~~~~-----~Pv~i~-----~CgH~FC~~CI~~~~~ 139 (476)
...||- |...+. ..+... .|++.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 556887 876553 235444 7999999999988753
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=53.71 E-value=2.5 Score=36.49 Aligned_cols=46 Identities=22% Similarity=0.601 Sum_probs=30.2
Q ss_pred cccccccccccccc---ceeecccCCccchhHHHhhhhcCCCCCCCcccc
Q 011864 105 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 105 e~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
....|..|...|.- -..+-.||..||..|....+. ....|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHHH
Confidence 34679999887653 345678999999999876554 34567777553
No 97
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=53.03 E-value=7.2 Score=32.20 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=52.5
Q ss_pred EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011864 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 451 (476)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (476)
|.|.|.+. ..+|.|.+.=.-...+++|-++.. +.+. -|=+|| +. .+. |+ -++|
T Consensus 14 V~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyv--n~-~~~-------Ps--------~d~~ 71 (96)
T 1wz3_A 14 IVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYV--NS-AFS-------PN--------PDES 71 (96)
T ss_dssp EEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEE--EE-EEC-------CC--------TTSB
T ss_pred EEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEE--CC-ccc-------CC--------hhhH
Confidence 55555565 339999999999999999999888 5555 333333 21 121 11 2378
Q ss_pred cccccccccCCCCcchhhhhhh
Q 011864 452 LAGLRVNHTSNTDHLILAYRQK 473 (476)
Q Consensus 452 l~~l~~~~~~~~~~l~~~y~~k 473 (476)
+++|+..|-. .|.|||.|.--
T Consensus 72 m~~LY~~~kd-DGfLyi~Ys~~ 92 (96)
T 1wz3_A 72 VIDLYNNFGF-DGKLVVNYACS 92 (96)
T ss_dssp HHHHHHHHCB-TTBEEEEEESC
T ss_pred HHHHHHHhCC-CCEEEEEEeCC
Confidence 9999999997 99999999743
No 98
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=52.95 E-value=4.9 Score=44.10 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=37.5
Q ss_pred cccccccccccccccc---------eeecccCCcc--------------------chhHHHhhhhc-------CCCCCCC
Q 011864 104 RKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPA 147 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P---------v~i~~CgH~F--------------------C~~CI~~~~~~-------~~~~CP~ 147 (476)
.+.-.|+-|+.-+.+| +.++.||..| |..|...+-.- ....||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 3467899999888776 4567888888 99999888641 2358999
Q ss_pred ccccc
Q 011864 148 CRTHC 152 (476)
Q Consensus 148 CR~~~ 152 (476)
|.-.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 98766
No 99
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=52.84 E-value=13 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=23.9
Q ss_pred ccccccccccccccccce-eecccCCccchhHHHhh
Q 011864 103 IRKDVQCPICLGIIKKTR-TVMECLHRFCRECIDKS 137 (476)
Q Consensus 103 l~e~l~C~ICl~~~~~Pv-~i~~CgH~FC~~CI~~~ 137 (476)
+..+-.|+||...-..-. -+--|+-.|+..|+.+.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccc
Confidence 345678999985433221 12348999999999986
No 100
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=51.34 E-value=5.3 Score=44.56 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=37.9
Q ss_pred cccccccccccccccc---------eeecccCCcc--------------------chhHHHhhhhc-------CCCCCCC
Q 011864 104 RKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPA 147 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~P---------v~i~~CgH~F--------------------C~~CI~~~~~~-------~~~~CP~ 147 (476)
.+.-.|+-|+.-+.+| +.++.||..| |..|...+-.- ....||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 3457899999988776 4567888776 99999887641 2357999
Q ss_pred ccccccc
Q 011864 148 CRTHCAS 154 (476)
Q Consensus 148 CR~~~~~ 154 (476)
|.-.+..
T Consensus 189 CGP~l~l 195 (761)
T 3vth_A 189 CGPSLSF 195 (761)
T ss_dssp TSCCEEE
T ss_pred cCCeeEE
Confidence 9876643
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.47 E-value=7 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=25.5
Q ss_pred cccccccccccccc---cceeecccCCccchhHHHhh
Q 011864 104 RKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 104 ~e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
.+...|.+|...|. .-..+-.||+.||..|....
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 34568999998765 33556789999999997654
No 102
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=46.77 E-value=11 Score=29.11 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=23.2
Q ss_pred ccccccccccc---cceeecccCCccchhHHHhh
Q 011864 107 VQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 107 l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
..|.+|...|. .....-.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 47999998765 33445779999999997543
No 103
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.39 E-value=4.3 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.591 Sum_probs=12.5
Q ss_pred cccccccccccccccee
Q 011864 105 KDVQCPICLGIIKKTRT 121 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~ 121 (476)
+.+.||||+..|..+..
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 35789999888877653
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.57 E-value=9.9 Score=35.86 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=24.8
Q ss_pred ccccccccccccc---cceeecccCCccchhHHHhh
Q 011864 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 105 e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
+...|.+|...|. .-..+..||+.||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3458999987665 33456789999999997654
No 105
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.23 E-value=11 Score=30.48 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=24.7
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhhh
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~ 138 (476)
...|.+|...|. .-..+..||+.||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999988665 334557899999999986544
No 106
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=44.18 E-value=7.3 Score=32.50 Aligned_cols=12 Identities=42% Similarity=1.107 Sum_probs=11.1
Q ss_pred ccchhHHHhhhh
Q 011864 128 RFCRECIDKSMR 139 (476)
Q Consensus 128 ~FC~~CI~~~~~ 139 (476)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 107
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.13 E-value=11 Score=29.95 Aligned_cols=33 Identities=21% Similarity=0.620 Sum_probs=24.5
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhhh
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~ 138 (476)
...|.+|...|. .-...-.||..||..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 447999998765 334457899999999986543
No 108
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.01 E-value=7.3 Score=32.42 Aligned_cols=12 Identities=42% Similarity=1.076 Sum_probs=11.1
Q ss_pred ccchhHHHhhhh
Q 011864 128 RFCRECIDKSMR 139 (476)
Q Consensus 128 ~FC~~CI~~~~~ 139 (476)
-||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 109
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=43.63 E-value=11 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=24.8
Q ss_pred ccccccccccccc---cceeecccCCccchhHHHhh
Q 011864 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 105 e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
+...|.+|...|. .-...-.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3457999988765 33455789999999997654
No 110
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.35 E-value=14 Score=30.87 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=35.7
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+-+.|..|...|........=|..||..|....+. ..|+.|..+|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCc
Confidence 34889999988875333356788999999876553 679999998874
No 111
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.88 E-value=5.4 Score=40.63 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=0.0
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhhh
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~ 138 (476)
...|.+|...|. .-..+..||+.||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 457999988665 224457899999999987654
No 112
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=41.28 E-value=10 Score=34.34 Aligned_cols=46 Identities=20% Similarity=0.410 Sum_probs=31.5
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhc---CCCCCCCccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---GNNECPACRTHC 152 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~---~~~~CP~CR~~~ 152 (476)
+..|.||..- -+-+.+-.|...|+..|+...+.. +...||.|+..-
T Consensus 4 ~~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3469999854 223334568889999998766542 346899998743
No 113
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.20 E-value=19 Score=26.80 Aligned_cols=44 Identities=23% Similarity=0.546 Sum_probs=30.9
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~ 150 (476)
...|.||... -.-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 11 ~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 5579999873 23333356888999999987543 24468999975
No 114
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=41.10 E-value=6.6 Score=29.55 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=32.9
Q ss_pred cccccccccccc----cceeecccCCccchhHHHhhhh------cCCCCCCCcccccc
Q 011864 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR------LGNNECPACRTHCA 153 (476)
Q Consensus 106 ~l~C~ICl~~~~----~Pv~i~~CgH~FC~~CI~~~~~------~~~~~CP~CR~~~~ 153 (476)
...|.||..... .-+..-.|...|+..|+..-+. .+...||.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 567999997642 2334456888999999886432 24568999976443
No 115
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.90 E-value=11 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=23.9
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhh
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
...|.+|...|. .-..+-.||+.||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 447999988765 33445789999999997654
No 116
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.27 E-value=14 Score=29.36 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=23.6
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhh
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~ 137 (476)
...|.+|...|. .-...-.||..||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 457999988764 33445679999999997543
No 117
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.11 E-value=15 Score=28.23 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=33.6
Q ss_pred cccccccccccccc--ceeecccCCccchhHHHhhhhc---CCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKK--TRTVMECLHRFCRECIDKSMRL---GNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~--Pv~i~~CgH~FC~~CI~~~~~~---~~~~CP~CR~~~~~ 154 (476)
+...|+||...... -+..-.|..-|+..|+..-... ....||.|...+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 35679999876543 2333458888999998654431 34689999876543
No 118
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=38.91 E-value=14 Score=30.13 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=49.6
Q ss_pred CCCCCCCCCccccCCCchhhhhhc-----cCCCccc-eEEEEEecccccCCCCCCCCCChhhhhhccccccccccccccc
Q 011864 387 QCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHT 460 (476)
Q Consensus 387 ~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~ 460 (476)
-.+|.|.+-=.--..++||-++.. +.+.+++ |=+|| .. .+. |+ -++|+++|+..|-
T Consensus 14 g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV-nn--~~~-------P~--------~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV-NQ--SFA-------PS--------PDQEVGTLYECFG 75 (91)
T ss_dssp SSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE-TT--TBC-------CC--------TTCBHHHHHHHHC
T ss_pred CCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE-CC--ccC-------CC--------hhhHHHHHHHHhC
Confidence 469999998888899999999877 7776665 44444 11 111 11 1568999999998
Q ss_pred CCCCcchhhhhh
Q 011864 461 SNTDHLILAYRQ 472 (476)
Q Consensus 461 ~~~~~l~~~y~~ 472 (476)
..|.|||.|..
T Consensus 76 -~DGfLyv~Ys~ 86 (91)
T 4gdk_A 76 -SDGKLVLHYCK 86 (91)
T ss_dssp -BTTEEEEEEES
T ss_pred -CCCEEEEEEeC
Confidence 89999999974
No 119
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.30 E-value=13 Score=27.73 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=30.2
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCcccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~~ 151 (476)
...|.||... -.-+..-.|...|+..|+..-+. .+...||.|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4579999863 22233345888999999986544 234589999763
No 120
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.26 E-value=13 Score=29.75 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=34.4
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-+.|..|...|........=+..||..|....+ ...|..|..+|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCcccc
Confidence 3488999998886543335567889999986544 3689999988863
No 121
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=37.90 E-value=21 Score=31.51 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=29.0
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhh----------cCCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----------LGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----------~~~~~CP~CR~ 150 (476)
+..|.||.+-=. -+..-.|-..||..||.+-+. .+...||.|..
T Consensus 63 ~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456777765321 112246889999999986552 34578999964
No 122
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.88 E-value=19 Score=30.13 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=36.1
Q ss_pred cccccccccccc---cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
-+.|..|...|. .... ..=+..||..|....+. ....|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 488999999886 2343 56778899999988775 22379999998875
No 123
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.83 E-value=7.1 Score=38.89 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=33.4
Q ss_pred cccccccccccccccceeec---ccC--CccchhHHHhhhhcCCCCCCCcccc
Q 011864 104 RKDVQCPICLGIIKKTRTVM---ECL--HRFCRECIDKSMRLGNNECPACRTH 151 (476)
Q Consensus 104 ~e~l~C~ICl~~~~~Pv~i~---~Cg--H~FC~~CI~~~~~~~~~~CP~CR~~ 151 (476)
...-.||||.....-.+... .=| +.+|..|-..|-- ....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 44678999999776554311 234 5679999999876 45789999874
No 124
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=35.78 E-value=14 Score=34.18 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=31.1
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCccccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~~~ 152 (476)
..|.+|..-= +-+.+-.|...|+..|+.+.+. .+...||.|+..-
T Consensus 8 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCCE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4699998542 2233456888999999976654 2446899998743
No 125
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=29.57 E-value=14 Score=27.53 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=29.8
Q ss_pred cccccccccccccc---ceeecccCCccchhHHHhhhh----cCCCCCCCcccc
Q 011864 105 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMR----LGNNECPACRTH 151 (476)
Q Consensus 105 e~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~ 151 (476)
+...|+||...+.+ -|..-.|..-|+..|+.-... .....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35679999987642 233345777788888753222 134689999763
No 126
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.39 E-value=32 Score=27.87 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=31.8
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhc---CCCCCCCcccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---GNNECPACRTH 151 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~---~~~~CP~CR~~ 151 (476)
....|.||...- +-+.+-.|.-.|...|+.+-+.. +...||.|...
T Consensus 24 n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 355799998642 23334568888999999776642 44589999863
No 127
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.71 E-value=7.8 Score=32.20 Aligned_cols=42 Identities=24% Similarity=0.612 Sum_probs=28.3
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+..||+|...+.. . =++.+|..|-..+.. ...||.|..++..
T Consensus 32 ~~~CP~Cq~eL~~-~----g~~~hC~~C~~~f~~--~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-D----NGHARCRSCGEFIEM--KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEE-E----TTEEEETTTCCEEEE--EEECTTTCSBCEE
T ss_pred cccCccCCCccee-c----CCEEECccccchhhc--cccCcchhhHHHH
Confidence 4799999987652 1 134458888665433 3579999887654
No 128
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.92 E-value=42 Score=23.64 Aligned_cols=43 Identities=28% Similarity=0.597 Sum_probs=28.0
Q ss_pred cccccccccc--cceeecccCCccchhHHHhhhh---cCCCCCCCccc
Q 011864 108 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (476)
Q Consensus 108 ~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~ 150 (476)
.|.||...-. .-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4788875432 2233356888999999975443 23457999965
No 129
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.99 E-value=48 Score=29.20 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=35.0
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-+.|..|...|..... ..=|..||..|....+. ..|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeeccccccccc---ccccccccccCC
Confidence 45889999988875544 45678899999887664 679999887754
No 130
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.67 E-value=26 Score=31.64 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=35.7
Q ss_pred cccccccccccccc---ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+-|.|..|...|.. +.. ..=+..||..|....+. ....|+.|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG-NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEE-EETTEEECHHHHHHHHS-CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEE-EeCCccccccccccccc-cCCccccCCCcccc
Confidence 45889999988875 443 55678999999887764 11269999998864
No 131
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.34 E-value=31 Score=28.44 Aligned_cols=45 Identities=18% Similarity=0.525 Sum_probs=30.5
Q ss_pred ccccccccccccc--cceeecccCCccchhHHHhhhh---cCCCCCCCcc
Q 011864 105 KDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMR---LGNNECPACR 149 (476)
Q Consensus 105 e~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR 149 (476)
.+..|.||.+.-. +-+....|+..|+..|+...+. .....||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3557999976532 2255577999999999977654 2345677764
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.14 E-value=32 Score=26.53 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=24.2
Q ss_pred cccccccccccccceeeccc-CCccchhHHHhhh
Q 011864 106 DVQCPICLGIIKKTRTVMEC-LHRFCRECIDKSM 138 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~C-gH~FC~~CI~~~~ 138 (476)
..-|.||.+.- .+.++.| +-.||..|....-
T Consensus 8 ~pWC~ICneDA--tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDA--TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCC--CEEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCC--eEEecCCCCceehHHHHHHHc
Confidence 45799999872 3556889 7899999987765
No 133
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.87 E-value=59 Score=26.96 Aligned_cols=44 Identities=18% Similarity=0.451 Sum_probs=28.6
Q ss_pred ccccccccccc--------ccceeecccCCccchhHHHh------hhhcCCCCCCCcc
Q 011864 106 DVQCPICLGII--------KKTRTVMECLHRFCRECIDK------SMRLGNNECPACR 149 (476)
Q Consensus 106 ~l~C~ICl~~~--------~~Pv~i~~CgH~FC~~CI~~------~~~~~~~~CP~CR 149 (476)
...|.+|+..- ..-+....|+..|+..||.. .+......||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45688997642 12244567999999999953 2233556788875
No 134
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=24.61 E-value=29 Score=27.85 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=33.0
Q ss_pred ccccccccccccc-c---cceeecccCCccchhHHHhhhh-cCCCCCCCcccccc
Q 011864 104 RKDVQCPICLGII-K---KTRTVMECLHRFCRECIDKSMR-LGNNECPACRTHCA 153 (476)
Q Consensus 104 ~e~l~C~ICl~~~-~---~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~CR~~~~ 153 (476)
.++..|.||...- . .-+.+-.|.-.|...|+..-.. .+...||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3466899999753 1 2233346888999999975432 34568999976443
No 135
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=24.30 E-value=18 Score=27.30 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=31.0
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCcccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~~ 151 (476)
.+..|.||... -+-+..-.|...|+..|+..-+. .+...||.|...
T Consensus 7 ~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG-GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC-SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC-CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35679999864 23333456888899999976443 234579999764
No 136
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.17 E-value=27 Score=31.96 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=29.9
Q ss_pred ccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCcccc
Q 011864 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~~ 151 (476)
..|.+|..-- +-+.+-.|...|+..|+..-+. .+...||.|+..
T Consensus 3 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCC-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3699998542 2222356888999999976554 245689999865
No 137
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.77 E-value=66 Score=27.83 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=29.1
Q ss_pred cccccccccccccceeecccCCccchhHHHhhh----------hcCCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSM----------RLGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~----------~~~~~~CP~CR~ 150 (476)
+..|.||.+-=.-. ..-.|-..||..||.+.+ ......|+.|..
T Consensus 57 ~~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34588987642211 124688999999998752 124578999954
No 138
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.77 E-value=21 Score=26.29 Aligned_cols=46 Identities=20% Similarity=0.553 Sum_probs=30.7
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCccccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~~~ 152 (476)
+..|.||... ..-+..-.|...|+..|+..-+. .+...||.|....
T Consensus 5 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999874 23333456888999999986443 2345799887643
No 139
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=23.67 E-value=40 Score=30.09 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=31.9
Q ss_pred ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
.-+.|..|...|..... ..=|..||..|....+. ..|..|..+|..
T Consensus 86 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS---CCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCce-eECCEeeecCccccccc---cccccCCCccCC
Confidence 34778888777765433 34567889888766553 679999887764
No 140
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.65 E-value=14 Score=26.90 Aligned_cols=44 Identities=20% Similarity=0.576 Sum_probs=28.8
Q ss_pred cccccccccccccceeecccCCccchhHHHhhhh---cCCCCCCCccc
Q 011864 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (476)
Q Consensus 106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~---~~~~~CP~CR~ 150 (476)
+..|.||... -.-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4579999874 23333356888899999876543 23357888853
No 141
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.97 E-value=20 Score=28.78 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=33.9
Q ss_pred ccccccccccccc---cc-eeecccCCccchhHHHhhhh-------cCCCCCCCcccccc
Q 011864 105 KDVQCPICLGIIK---KT-RTVMECLHRFCRECIDKSMR-------LGNNECPACRTHCA 153 (476)
Q Consensus 105 e~l~C~ICl~~~~---~P-v~i~~CgH~FC~~CI~~~~~-------~~~~~CP~CR~~~~ 153 (476)
....|.||...-. +. +.+-.|...|+..|+..-+. .+...||.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3568999997632 22 33356888999999986543 24578999987544
No 142
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.80 E-value=43 Score=27.95 Aligned_cols=48 Identities=13% Similarity=0.342 Sum_probs=35.1
Q ss_pred ccccccccccccc---cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (476)
Q Consensus 105 e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~ 154 (476)
+-+.|..|...|. .+.. ..=|..||..|....+. ....|+.|..+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE-EETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEE-EECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 4588999998885 2443 55678899999888765 22379999988764
No 143
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.93 E-value=33 Score=31.45 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=30.1
Q ss_pred ccccccccccccc------eeecccCCccchhHHHhh------hh----cCCCCCCCccccc
Q 011864 107 VQCPICLGIIKKT------RTVMECLHRFCRECIDKS------MR----LGNNECPACRTHC 152 (476)
Q Consensus 107 l~C~ICl~~~~~P------v~i~~CgH~FC~~CI~~~------~~----~~~~~CP~CR~~~ 152 (476)
..||||...+... +.+-.|..-|+..|+.-- +. .....||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699999887644 233457788888887431 11 0147899998743
No 144
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Probab=21.83 E-value=40 Score=34.32 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhccCCceeEEEEEeecCCCCCC--CCCCCccccCC
Q 011864 358 LNKLVEYLRSLQENNDELDVRLMLVSADTQCAP--SLQQPYLCCQP 401 (476)
Q Consensus 358 ~~k~~~~l~~~~~~~~e~~~~l~l~~~d~~~~p--~l~~p~l~c~p 401 (476)
|+++++-|...+ ++.+.|.|.|||.|+..|| .|+.|-|-=.|
T Consensus 346 It~~l~~l~~~~--d~~~~v~V~iv~~~g~~~~~~~~~~~~i~~~p 389 (394)
T 1js8_A 346 ITTSLKHLRLDA--HDDFDIKVTIKGIDGHVLSNKYLSPPTVFLAP 389 (394)
T ss_dssp CHHHHHHTTCCT--TSCEEEEEEEEESSSCEECGGGSCCCEEEEEC
T ss_pred chHHHHHcCCCc--CCceeEEEEEEecCCCCCcccccCCCeEEEec
Confidence 788888886543 4788999999999999999 68777665544
No 145
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.05 E-value=68 Score=32.82 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=27.3
Q ss_pred ccccccccccccceeec--ccCCccchhHHHhhhhc---------CCCCCCCccc
Q 011864 107 VQCPICLGIIKKTRTVM--ECLHRFCRECIDKSMRL---------GNNECPACRT 150 (476)
Q Consensus 107 l~C~ICl~~~~~Pv~i~--~CgH~FC~~CI~~~~~~---------~~~~CP~CR~ 150 (476)
..|.+|.+-- +-+.+- .|...||..||...+.. ....|-.|..
T Consensus 94 ~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 94 SYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp CSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred ccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4566665422 112223 68899999999988731 3468999864
Done!