RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011871
(476 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 121 bits (303), Expect = 2e-30
Identities = 60/426 (14%), Positives = 126/426 (29%), Gaps = 70/426 (16%)
Query: 81 MAGVLARYRKTLMERTKH-----HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGV 135
+L K +M H Y LA + +I +G + S
Sbjct: 53 FEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPA-- 110
Query: 136 HSRQFEVGVLDWFARLWEL-------ENNEYWGYITNCGTEGNLHGILVGRE-------- 180
+ E ++DW ++ +L E E G I +E L +L R
Sbjct: 111 -CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169
Query: 181 ---------VFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFK---AKL 228
V + YAS ++H SV +A + ++ + + + + +
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229
Query: 229 LQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288
P + +GTT + D+L V E ++H D A G +
Sbjct: 230 KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI-----WLHVDAAYAGSAFICPEF 284
Query: 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDA-------- 340
++ + S + + HK++ C + + ++ + + +
Sbjct: 285 RHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT 344
Query: 341 -----TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE 395
+ R + + +W+ G KG Q ++K ++ +H + +L + E
Sbjct: 345 DYRHWQLPLGRRFRS-LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE 403
Query: 396 -LSSTVVFERPQDEEFVRRW-QLACQGNIAHV--------------VVMPNVTIDKLDDF 439
V F + + H+ + V +
Sbjct: 404 VTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLA 463
Query: 440 LNELIE 445
+
Sbjct: 464 WEHIRG 469
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 112 bits (280), Expect = 1e-27
Identities = 71/354 (20%), Positives = 116/354 (32%), Gaps = 48/354 (13%)
Query: 137 SRQFEVGVLDWFARLWEL---ENNEYWGYITNCGTEGNLHGILVGREVF----------P 183
S ++ ++ A LW +N + G T +E + G + + +
Sbjct: 91 SAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT 150
Query: 184 DGILYASRESHYSVFKAARMYRMECVKVDC-LISGEIDCADFKAKLLQNKDKPAIINVNI 242
D K AR + +E ++ +D + +
Sbjct: 151 DKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEAC---DENTIGVVPTF 207
Query: 243 GTTVKGAVDDLDLVIQTLEESGFTQDR-FYIHCDGALFGLMMPFVKKAPKVSFKKP-IGS 300
G T G + + L++ +H D A G + PFV F+ P + S
Sbjct: 208 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKS 267
Query: 301 VSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASRDAT--IMGSRNGHAPIFLWY 356
+S SGHKF P+ CG I R E L NV+YL + T I SR I +Y
Sbjct: 268 ISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY 327
Query: 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEFV- 411
R G +G+ K + A YL D + G I + V + +D E
Sbjct: 328 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG 387
Query: 412 ------------RRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIE 445
R WQ+ A + ++ +D + L +
Sbjct: 388 YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKA 441
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 88.5 bits (218), Expect = 1e-19
Identities = 29/254 (11%), Positives = 66/254 (25%), Gaps = 19/254 (7%)
Query: 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYS 196
+ ++ +L + + + L R P + R S
Sbjct: 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS 152
Query: 197 VFKAARMYRMECVKVDCLISGEIDCAD----FKAKLLQNKDKPAIINVNIGTTVKGAVDD 252
FK+ E V ++ ++ G+ D + ++ D
Sbjct: 153 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR 212
Query: 253 LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCP 312
L+ + + A + + + I + S K P
Sbjct: 213 LEELAVICANYD-----IPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP 267
Query: 313 MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372
+ + N ++ G + + + TL G G++K +++
Sbjct: 268 VGGAIIAGF---------NEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKE 318
Query: 373 CLRNAHYLKDRLLD 386
YL +L
Sbjct: 319 RKEMFVYLSTQLKK 332
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 31.7 bits (71), Expect = 0.21
Identities = 27/156 (17%), Positives = 41/156 (26%), Gaps = 17/156 (10%)
Query: 306 HKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATI-MGSRNGHAPIFLWYTLNRKGYK 364
R I L + +Y+ A + + + L G +
Sbjct: 281 QLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPE 340
Query: 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS--TVVFERPQDEEFVRRWQLACQGNI 422
G ++ K + AH L LL+ P+D E VRR LA +G
Sbjct: 341 GLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRR-ALAERGFH 399
Query: 423 AHVVVMPNV-------------TIDKLDDFLNELIE 445
V + L L E
Sbjct: 400 GATPVPREYGENLALFAATELHEEEDLLALREALKE 435
>d1b4ua_ a.88.1.1 (A:) LigA subunit of an aromatic-ring-opening
dioxygenase LigAB {Sphingomonas paucimobilis, formerly
Pseudomonas paucimobilis [TaxId: 13689]}
Length = 132
Score = 28.1 bits (63), Expect = 1.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 61 CFSVTEPEADDEFTGDKEAYMA 82
S+ + E + F D+ AY+
Sbjct: 34 AMSLMKAENRERFKADESAYLD 55
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 29.2 bits (65), Expect = 1.4
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 72 EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIE 130
TGDK+ A V + K P ++ G L F++ D + E
Sbjct: 166 RLTGDKKFQEA-VEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYE 223
>d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 119
Score = 27.5 bits (61), Expect = 1.7
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 384 LLDAGISAMLNELSSTVVFERPQ-DEEFVRRWQLACQGNIAHVVVM 428
L A+ S TVV ++ A Q A + +
Sbjct: 71 ALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLNI 116
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 92
Score = 26.6 bits (59), Expect = 2.4
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM 392
G GF+ E+ + +L L + G S +
Sbjct: 3 SGSSGFKAELNE------FLTRELAEDGYSGV 28
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 27.7 bits (61), Expect = 4.0
Identities = 20/187 (10%), Positives = 49/187 (26%), Gaps = 13/187 (6%)
Query: 235 PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-KKAPKVS 293
+I +I + K +L I + GF + A + + K+ +
Sbjct: 153 IGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTT 212
Query: 294 FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGH---A 350
F V++ G +G + + ++ S D +I
Sbjct: 213 FASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVA-----QWSGDGSISEIELTPKVKL 267
Query: 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEF 410
+ Y + +++ ++ L +++ + E
Sbjct: 268 NLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPT----KTIESLRAIAAKFDESIQKKCEE 323
Query: 411 VRRWQLA 417
V
Sbjct: 324 VIAKYKP 330
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 26.8 bits (59), Expect = 5.2
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386
+T +KGY+ + E+++ + + +L D
Sbjct: 44 FTRKKKGYEDVEPEMERIVEAMEEARLKLFD 74
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 27.1 bits (59), Expect = 5.4
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 194 HYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL 253
+ F+A + + + +I A +AK + +K + IG +
Sbjct: 205 VSTRFEALGWHTIWVKNGNTGYD-DIRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSY 263
Query: 254 ---------DLVIQTLEESGFTQDRFYI 272
V T + G+ D F++
Sbjct: 264 SVHGSALGAKEVEATRQNLGWPYDTFFV 291
>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193
{Anabaena variabilis [TaxId: 1172]}
Length = 128
Score = 26.1 bits (57), Expect = 5.4
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 286 VKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS 345
V+ + + F PI ++ G + V P GV TR+ +N++S+ VEY + M +
Sbjct: 24 VQFSCNLEFLSPISGNTLKGTEEV-IPFLKGVT-TRVAEVNIMSTTVEYPRASGVWQMRT 81
Query: 346 RNGHAPIFL-WYTLNRKG 362
G ++ L+ +G
Sbjct: 82 TKGTLYTLHNFFRLDEEG 99
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 24.6 bits (54), Expect = 8.3
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 250 VDDLDLVIQTLEESGFT 266
++D I+ L+E
Sbjct: 45 PSNMDKCIEVLKEKKVD 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,851,614
Number of extensions: 88649
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 14
Length of query: 476
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,185,626
Effective search space: 458837262
Effective search space used: 458837262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)