Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>011872
MTCFIANAKFSSLPLSISTICCSSSSSSSSSPSKDGSKSVKLREDWRKRSKPIPPGGTYP
AKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEE
LLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRP
VLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK
LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLP
ANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSL
VKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGL
EFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLSSK

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  011872
        (475 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2197848 - symbol:HCAR "7-hydroxymethyl chlorop...  2008  1.2e-207  1


>TAIR|locus:2197848 [details] [associations]
            symbol:HCAR "7-hydroxymethyl chlorophyll a (HMChl)
            reductase" species:3702 "Arabidopsis thaliana" [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0050454 "coenzyme F420
            hydrogenase activity" evidence=ISS] [GO:0015994 "chlorophyll
            metabolic process" evidence=IDA] [GO:0033354 "chlorophyll cycle"
            evidence=IDA] [GO:0090415 "7-hydroxymethyl chlorophyll a reductase
            activity" evidence=IDA] Pfam:PF04422 Pfam:PF04432 EMBL:CP002684
            GO:GO:0009507 GO:GO:0046872 GO:GO:0051536 EMBL:AC002376
            EMBL:AK117982 EMBL:BT002029 EMBL:BT006603 IPI:IPI00538009
            PIR:H86178 RefSeq:NP_171956.2 UniGene:At.42441 STRING:Q8GS60
            PRIDE:Q8GS60 EnsemblPlants:AT1G04620.1 GeneID:839472
            KEGG:ath:AT1G04620 TAIR:At1g04620 eggNOG:COG1035
            HOGENOM:HOG000148137 InParanoid:Q8GS60 KO:K00441 OMA:YVLGTPC
            PhylomeDB:Q8GS60 ProtClustDB:CLSN2690690
            BioCyc:MetaCyc:AT1G04620-MONOMER Genevestigator:Q8GS60
            GO:GO:0090415 GO:GO:0033354 InterPro:IPR007516 InterPro:IPR007525
            Uniprot:Q8GS60
        Length = 462

 Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
 Identities = 377/436 (86%), Positives = 404/436 (92%)

Query:    40 VKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETV 99
             VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE V
Sbjct:    37 VKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLEPV 96

Query:   100 VHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQ 159
             VHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVCVQ
Sbjct:    97 VHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVCVQ 156

Query:   160 SLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLF 219
             S          DP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRLLF
Sbjct:   157 S----------DPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRLLF 206

Query:   220 CGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQD 279
             CGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYEFMQD
Sbjct:   207 CGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFMQD 266

Query:   280 YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGIS 339
             YKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G++
Sbjct:   267 YKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSGLN 326

Query:   340 MTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQP 399
             MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+QP
Sbjct:   327 MTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPAQP 386

Query:   400 APKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIV 459
             AP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKKIV
Sbjct:   387 APLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKKIV 446

Query:   460 EMYNQNGQIDQMLSSK 475
             EMYN+NGQID+MLS K
Sbjct:   447 EMYNKNGQIDKMLSKK 462


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      475       446   0.00091  118 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  288 KB (2150 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.96u 0.10s 37.06t   Elapsed:  00:00:01
  Total cpu time:  36.96u 0.10s 37.06t   Elapsed:  00:00:01
  Start:  Mon May 20 18:25:44 2013   End:  Mon May 20 18:25:45 2013

Back to top