BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011872
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic
OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1
Length = 462
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/438 (86%), Positives = 405/438 (92%), Gaps = 10/438 (2%)
Query: 38 KSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLE 97
K VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE
Sbjct: 35 KKVKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLE 94
Query: 98 TVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVC 157
VVHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVC
Sbjct: 95 PVVHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVC 154
Query: 158 VQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRL 217
VQS DP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRL
Sbjct: 155 VQS----------DPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRL 204
Query: 218 LFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFM 277
LFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYEFM
Sbjct: 205 LFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFM 264
Query: 278 QDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTG 337
QDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G
Sbjct: 265 QDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSG 324
Query: 338 ISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPS 397
++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+
Sbjct: 325 LNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPA 384
Query: 398 QPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKK 457
QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKK
Sbjct: 385 QPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKK 444
Query: 458 IVEMYNQNGQIDQMLSSK 475
IVEMYN+NGQID+MLS K
Sbjct: 445 IVEMYNKNGQIDKMLSKK 462
>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza
sativa subsp. japonica GN=HCAR PE=3 SV=2
Length = 471
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/471 (79%), Positives = 412/471 (87%), Gaps = 19/471 (4%)
Query: 11 SSLPLSISTICCSSSSSSSSSPSKDGSKSVK--------LREDWRKRSKPIPPGGTYPAK 62
SSLP + CCS SS SSPS + K LREDWR+RSK IPPGG YPAK
Sbjct: 12 SSLPCATKPPCCSVSSVLPSSPSSHQCRGRKTSCGSIRALREDWRERSKAIPPGGVYPAK 71
Query: 63 DHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELL 122
DHCS+CGLCDTYYIAHVK+ACAFLGDGMSR+E LE +VHGRGR++D +D+ Y GV+E+LL
Sbjct: 72 DHCSQCGLCDTYYIAHVKNACAFLGDGMSRVEDLEPLVHGRGRKQD-MDEMYFGVYEQLL 130
Query: 123 YARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVL 182
YARK KPVEGAQWTGIVTTIA+EMLK MV+AVVCVQS DPDDRL+P PVL
Sbjct: 131 YARKMKPVEGAQWTGIVTTIAVEMLKANMVDAVVCVQS----------DPDDRLAPMPVL 180
Query: 183 ARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLY 242
ARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE +L LEKLY
Sbjct: 181 ARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLY 240
Query: 243 VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAN 302
VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPA
Sbjct: 241 VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAK 300
Query: 303 DLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK 362
DLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY G+SMTQHPQYITVRN+RG+EMLSLV+
Sbjct: 301 DLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKYPGVSMTQHPQYITVRNDRGREMLSLVE 360
Query: 363 NLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEF 422
LLE TPT+SSG R+PFV+ETVKADD AK GRGPSQPAP FVGN+IAF +NL+GPKGLEF
Sbjct: 361 GLLESTPTVSSGVRQPFVIETVKADDEAKQGRGPSQPAPTFVGNVIAFLLNLIGPKGLEF 420
Query: 423 ARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLS 473
ARYSLDYHTIRNYLHVNRAWGK+RA++H+PSYAKKIVE Y+++G+I+ ML
Sbjct: 421 ARYSLDYHTIRNYLHVNRAWGKQRAEQHIPSYAKKIVEAYDKDGRIESMLQ 471
>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=all1601 PE=4 SV=2
Length = 397
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/415 (52%), Positives = 280/415 (67%), Gaps = 29/415 (6%)
Query: 48 KRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRK 107
+++K + P PAK+ CS CGLCDTYYI +VK+ACAF+ +I+ LE H R R
Sbjct: 8 QKAKALKPNSRRPAKELCSECGLCDTYYIHYVKEACAFI---TQQIDTLEEQAHQRSRNL 64
Query: 108 DSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYY 167
D+ D+ Y GVH++++ A+K +P+ GAQWTGIV++IAIEML G+VE VVCVQ+
Sbjct: 65 DNPDELYFGVHQDMIAAKKQQPIAGAQWTGIVSSIAIEMLNHGLVEGVVCVQN------- 117
Query: 168 YNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ 227
+DR P PV+ARTPEE+LAA+ KPTLSPNL+ L VE +G+KRLL GVGCQ+Q
Sbjct: 118 ---SKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMKRLLVIGVGCQIQ 174
Query: 228 ALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHL 287
ALR+VE L LEKLYVLGT CVDN TR GL KFL+ S PETV+HYEFMQD+++H KH
Sbjct: 175 ALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYEFMQDFRIHFKHE 234
Query: 288 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYI 347
DG IE+VP+F L N L DV APSC SCFDY N+LADLVVGYMG P Q+I
Sbjct: 235 DGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFGW--------QWI 286
Query: 348 TVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNL 407
VRN+ GKEML LV+N L+ P +S G+R+ V + + A D P +V +
Sbjct: 287 LVRNDTGKEMLDLVQNQLDTQPVMSEGNRQEAVQQGISAYDKGVT-------LPMWVAKI 339
Query: 408 IAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMY 462
+ I+ +GPKGLE+AR+S+D H RNYL V R +K A H+P +AK+IV Y
Sbjct: 340 MGVVIDKIGPKGLEYARFSIDSHFTRNYLFVKRNHPEKLA-AHVPEFAKRIVGQY 393
>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=frhB PE=1 SV=2
Length = 291
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 124/271 (45%), Gaps = 35/271 (12%)
Query: 110 LDDTYLGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYY 167
++D YLG + + AR T ++ AQ GI T + + L+ G ++ +
Sbjct: 2 IEDPYLGKYVTCVSARSTDKEILKKAQDGGIATALMVYALEEGFIDGTIVA--------- 52
Query: 168 YNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQV 226
+ D P+P +A T EE+L A+G + ++SP ++ L + G+ ++ GV CQ+
Sbjct: 53 --GEGDKPWQPKPEVAMTREEILKARGTRYSISPQISWLKEATRSFGLDKVGVTGVCCQM 110
Query: 227 QALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDY 280
QA+R + + +N+ + + +G C++N + L ++ +++ + +
Sbjct: 111 QAVRKAQLYPINMRDVPGKVAFTVGLFCMENFPYKSLQSIVEDHANQSLGSVKKMEITKG 170
Query: 281 KVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISM 340
K + G++ VP L A + P C+ C DY + LAD+ G +G P G S
Sbjct: 171 KFWVYTERGNVATVP---LKATHKYE--QPGCHVCLDYVSNLADISTGSVGSPD--GWST 223
Query: 341 TQHPQYITVRNERGKEMLS--LVKNLLEITP 369
+ +R + G E+ S + + E P
Sbjct: 224 ------VFIRTKVGNEIWSKAVADGMFETKP 248
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae
GN=frhB PE=3 SV=1
Length = 280
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 55/264 (20%)
Query: 115 LGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDP 172
G ++ + AR T ++ AQ G V+ I L++ +++ V +D
Sbjct: 3 FGNYKTAISARATDKEILKKAQDGGYVSAAHIYGLESKLLDGVSVA-----------ADT 51
Query: 173 DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQALRS 231
+D + P +A TPEEVL A G K T+SPN++ L V ++++ G CQVQA+R
Sbjct: 52 EDGCNAAPKVATTPEEVLNAAGAKYTVSPNVSVLKDAVREYALEKVGIVGTPCQVQAIRK 111
Query: 232 VEHH----LNLEKLYVLGTNCVDNGTREG------------LDKFLKAASSEPETVLHYE 275
+ + + + V+G C++N + EG +D LK + + ++ +
Sbjct: 112 LIKYPMGFRHTDSRIVMGIFCMENFSYEGMKAIVEEYAGIRMDDVLKTDIGKGKFWVYSK 171
Query: 276 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 335
+ V LK D H+ E SC+ C DYT LAD+ G +G P
Sbjct: 172 YGDVKSVKLK--DTHMYE---------------QKSCHICTDYTAELADISTGSVGSP-- 212
Query: 336 TGISMTQHPQYITVRNERGKEMLS 359
G S I +R E+G+ ++
Sbjct: 213 DGWST------IFIRTEKGEAYIN 230
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=frhB PE=3 SV=1
Length = 287
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 40/268 (14%)
Query: 115 LGVHEELLYARKT--KPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDP 172
G +++++ AR T + ++ AQ GIV+T I L+ +++ V+ +D
Sbjct: 9 FGSYKKVVSARSTLKEVLKKAQDGGIVSTAFIYGLENNLLDGVIV------------ADN 56
Query: 173 DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQALRS 231
P +A TPEEVL A G K T+ PN++ L + V G +++ G CQV+A+R
Sbjct: 57 AGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQVRAVRK 116
Query: 232 VE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ-DYKVH 283
+ H+ + ++G C++N GL ++ + E V+ + + + V+
Sbjct: 117 LMKYPVGFRHVPDKIALIIGIFCMENFPYYGLKLIVEEHCGVKMEDVVKMDIGKGKFWVY 176
Query: 284 LKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQH 343
+ E L + IA C+ C DYT LAD+ G +G P G S
Sbjct: 177 TRW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADISTGSVGSP--DGWST--- 224
Query: 344 PQYITVRNERGKEMLS-LVKN-LLEITP 369
+ +R +G+E+ + +V++ LE+ P
Sbjct: 225 ---VFIRTAKGEEIFNKMVEDGYLEVKP 249
>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4
Length = 281
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 28/229 (12%)
Query: 115 LGVHEELLYARKT-KPVEG-AQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDP 172
LG ++E++ AR T + ++ AQ GIVT + L G++E V + P
Sbjct: 3 LGTYKEIVSARSTDREIQKLAQDGGIVTGLLAYALDEGIIEGAVV------------AGP 50
Query: 173 DDRL-SPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQALR 230
P P++A T +E+ AA G K T SPN+ L V G+++L + CQ +R
Sbjct: 51 GKEFWKPEPMVAMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIEKLGTVAIPCQTMGIR 110
Query: 231 SVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHL 284
+ + +K+ +L G C++N L F+ L+ E ++ +
Sbjct: 111 KAQTYPFGVRFVADKIKLLVGIYCMENFPYTSLQTFICEKLG-----LNMELVEKMDIGK 165
Query: 285 KHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 333
+ ++ Y LP + C C DY LAD+ G +G P
Sbjct: 166 GKFWVYTQDDVY-TLPLKETHGYEQAGCKICKDYVAELADVSTGSVGSP 213
>sp|Q58280|Y870_METJA Uncharacterized protein MJ0870 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0870 PE=3 SV=1
Length = 620
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 114/273 (41%), Gaps = 57/273 (20%)
Query: 118 HEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLS 177
+E+ YA+ +EG Q G+VT +L+ G ++ + V D+
Sbjct: 71 YEKYYYAKSD--IEG-QDGGVVTAFLKYLLENGKIDGAIVV-------------GDECWK 114
Query: 178 PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE---- 233
P ++ + E++L K +S L+ L G++++ G+ CQ+ LR ++
Sbjct: 115 PVSLVVQNAEDLLKTAKSKYAIS-TLDALRKAGEMGLEKVAVVGLPCQINGLRKLQYFPY 173
Query: 234 ---HHLNLEK----------LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDY 280
H L L + Y++G C + + + + L + E V ++ +
Sbjct: 174 HAKHDLELGRNGKPVKLPKIEYLIGLFCTEKFRYDNMKEVLSKHGIDIEKVEKFDIKKGK 233
Query: 281 KVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFDYTNALADLVVGYMGVPKYTGIS 339
L +++G +E DL + I C C D+ +AD+ VG +G P G S
Sbjct: 234 --LLVYVNGEKKEF--------DLKEFEICSGCKMCRDFDAEMADVSVGCVGSP--DGYS 281
Query: 340 MTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 372
I +R E+G+E +KN +E+ ++
Sbjct: 282 T------IIIRTEKGEE----IKNAVELKEGVN 304
>sp|P06130|FDHB_METFO Formate dehydrogenase subunit beta OS=Methanobacterium formicicum
GN=fdhB PE=1 SV=1
Length = 399
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 41/259 (15%)
Query: 120 ELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLS 177
++ YA+ + E ++ G VTT+ +LK G+V+AV+ V S D
Sbjct: 6 DMFYAKSSDAEIAEAGEYGGAVTTLLKFLLKEGIVDAVLAVDSSA-----------DLYD 54
Query: 178 PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE---- 233
P+L PE+V+ A G + NL + G + + A+ VE
Sbjct: 55 VVPILIEDPEDVVKAAGSLHFGTLNLAKVVTRYLDGAQDMKIAVTVKPCDAMTMVELMKR 114
Query: 234 HHLNLEKLYVLGTNCVDNGT------REGLDKFLKAASSEPETVLHYEFMQDYKVHLKHL 287
+N + + ++G NC GT R+ +++F + +P++V+ E + K+ ++
Sbjct: 115 EKVNADNVIMVGLNC--GGTMPPVKGRQMMEEFYEV---DPDSVVKEEIAKG-KLIVETE 168
Query: 288 DGHIEEVPYFCLPANDLVDV---IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 344
DG +E+P ++L D +C C +ADL G GV +
Sbjct: 169 DGTEKEIPI-----DELEDEGFGRRTNCRRCEVNIPRMADLACGNWGVIG----PLAGKA 219
Query: 345 QYITVRNERGKEMLSLVKN 363
+I V + +G E+L K
Sbjct: 220 TFIEVCSPKGAEVLEKAKE 238
>sp|Q58135|Y725_METJA Uncharacterized protein MJ0725 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0725 PE=3 SV=1
Length = 261
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 29/241 (12%)
Query: 133 AQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAA 192
AQ G TT+ L+ G+++AVV V D P LA TP E+L +
Sbjct: 14 AQDGGFTTTLLSYCLENGILDAVVVV-------------GDKNWKPVAYLATTPTELLKS 60
Query: 193 KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNG 252
K ++SPN N L ++ G+ C + L ++ L L+ +G C N
Sbjct: 61 TKSKYSISPN-NKLLEYATENYDKVGLVGLPCHI--LGGLQFDLTLK----VGLFCTKNF 113
Query: 253 TREGLDKFLKAA------SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVD 306
+ + +K + +F+ + + K G E+V Y +P ++
Sbjct: 114 YYDTIKSIIKERFGVNIDEVAKMNITKGKFVVE-TLKKKGFAGT-EKVVYE-IPIKEIEK 170
Query: 307 VIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLE 366
+ C C D++ AD+ VG +G + ++ + NE ++ L VK ++
Sbjct: 171 LCNLGCRVCTDFSAKYADVSVGSVGSEDGWNTVIVRNKMVEDIINEMAEKGLIEVKETVD 230
Query: 367 I 367
I
Sbjct: 231 I 231
>sp|Q5P316|RL18_AROAE 50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1)
GN=rplR PE=3 SV=1
Length = 117
Score = 33.1 bits (74), Expect = 4.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 373 SGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYH 430
SG R TV+AD +++ G ++ A + VG LIA G + + F R YH
Sbjct: 43 SGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQYH 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,462,280
Number of Sequences: 539616
Number of extensions: 8055973
Number of successful extensions: 26827
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 26712
Number of HSP's gapped (non-prelim): 92
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)