Query 011872
Match_columns 475
No_of_seqs 263 out of 674
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03289 frhB coenzyme F420 h 100.0 2.1E-52 4.6E-57 417.5 27.8 243 115-382 1-255 (275)
2 PRK09326 F420H2 dehydrogenase 100.0 1.1E-52 2.4E-57 431.0 24.7 276 59-371 8-304 (341)
3 COG1035 FrhB Coenzyme F420-red 100.0 3.3E-52 7.1E-57 422.1 24.1 272 60-370 2-293 (332)
4 PRK09325 coenzyme F420-reducin 100.0 3.6E-51 7.8E-56 410.1 28.0 234 114-372 2-247 (282)
5 PF04432 FrhB_FdhB_C: Coenzyme 100.0 1.1E-33 2.3E-38 261.7 16.6 150 212-375 2-157 (161)
6 PF04422 FrhB_FdhB_N: Coenzyme 99.8 1.8E-20 4E-25 155.5 8.8 80 119-208 1-82 (82)
7 PF14697 Fer4_21: 4Fe-4S diclu 97.1 0.00013 2.7E-09 57.1 0.5 41 59-99 2-53 (59)
8 COG1143 NuoI Formate hydrogenl 96.7 0.00046 1E-08 65.3 0.5 45 56-100 48-110 (172)
9 PF13237 Fer4_10: 4Fe-4S diclu 96.2 0.0016 3.5E-08 48.8 0.4 20 58-77 2-21 (52)
10 PF12837 Fer4_6: 4Fe-4S bindin 96.1 0.0012 2.7E-08 42.6 -0.4 20 59-78 3-22 (24)
11 PF12797 Fer4_2: 4Fe-4S bindin 95.5 0.0041 9E-08 39.4 0.3 19 58-76 3-21 (22)
12 PF00037 Fer4: 4Fe-4S binding 95.4 0.0031 6.7E-08 40.6 -0.5 20 59-78 2-21 (24)
13 PF13187 Fer4_9: 4Fe-4S diclus 93.8 0.018 4E-07 43.3 0.1 15 64-78 1-15 (55)
14 TIGR02512 Fe_only_hydrog hydro 93.8 0.015 3.2E-07 61.2 -0.6 21 59-79 3-23 (374)
15 PRK08318 dihydropyrimidine deh 93.6 0.025 5.4E-07 60.3 0.7 62 59-129 338-413 (420)
16 TIGR02936 fdxN_nitrog ferredox 93.6 0.019 4.1E-07 47.8 -0.2 21 59-79 17-37 (91)
17 PF12838 Fer4_7: 4Fe-4S diclus 93.5 0.017 3.6E-07 43.4 -0.6 15 64-78 1-15 (52)
18 TIGR02494 PFLE_PFLC glycyl-rad 93.4 0.027 5.8E-07 56.8 0.6 44 56-99 41-96 (295)
19 COG1149 MinD superfamily P-loo 93.2 0.11 2.3E-06 52.7 4.5 82 59-149 65-163 (284)
20 PRK08348 NADH-plastoquinone ox 93.2 0.027 5.9E-07 49.7 0.3 44 56-99 35-87 (120)
21 PF12800 Fer4_4: 4Fe-4S bindin 93.0 0.049 1.1E-06 32.3 1.1 15 63-77 2-16 (17)
22 PRK06273 ferredoxin; Provision 92.8 0.035 7.5E-07 52.2 0.4 21 59-79 45-65 (165)
23 PRK05888 NADH dehydrogenase su 92.3 0.068 1.5E-06 49.8 1.7 17 62-78 57-73 (164)
24 COG1144 Pyruvate:ferredoxin ox 92.3 0.045 9.8E-07 46.5 0.4 53 40-99 19-80 (91)
25 CHL00014 ndhI NADH dehydrogena 92.3 0.048 1E-06 51.1 0.6 21 58-78 54-74 (167)
26 PRK08222 hydrogenase 4 subunit 92.1 0.055 1.2E-06 51.5 0.7 44 56-99 31-87 (181)
27 TIGR01971 NuoI NADH-quinone ox 92.0 0.066 1.4E-06 47.1 1.1 17 62-78 42-58 (122)
28 COG1145 NapF Ferredoxin [Energ 91.9 0.067 1.4E-06 44.4 0.9 42 59-100 25-78 (99)
29 TIGR00403 ndhI NADH-plastoquin 91.8 0.058 1.3E-06 51.4 0.6 22 57-78 56-77 (183)
30 PF14697 Fer4_21: 4Fe-4S diclu 91.7 0.047 1E-06 42.6 -0.1 19 60-78 36-55 (59)
31 TIGR02176 pyruv_ox_red pyruvat 91.6 0.082 1.8E-06 63.4 1.6 54 414-471 1097-1156(1165)
32 PRK09626 oorD 2-oxoglutarate-a 91.3 0.1 2.2E-06 44.9 1.5 22 57-78 10-31 (103)
33 PF12798 Fer4_3: 4Fe-4S bindin 91.3 0.068 1.5E-06 30.8 0.2 13 65-77 1-13 (15)
34 CHL00065 psaC photosystem I su 91.1 0.11 2.4E-06 42.5 1.5 20 59-78 5-24 (81)
35 COG1144 Pyruvate:ferredoxin ox 91.1 0.069 1.5E-06 45.4 0.2 19 60-78 63-81 (91)
36 TIGR02912 sulfite_red_C sulfit 91.0 0.1 2.2E-06 53.6 1.4 41 59-99 165-215 (314)
37 PRK12387 formate hydrogenlyase 90.9 0.077 1.7E-06 50.2 0.4 44 56-99 31-87 (180)
38 COG1148 HdrA Heterodisulfide r 90.8 0.1 2.2E-06 56.7 1.1 19 59-78 221-239 (622)
39 PRK14028 pyruvate ferredoxin o 90.7 0.11 2.3E-06 53.3 1.2 41 59-99 243-303 (312)
40 TIGR00276 iron-sulfur cluster 90.7 0.12 2.6E-06 52.6 1.5 27 51-79 149-175 (282)
41 PRK09625 porD pyruvate flavodo 90.6 0.059 1.3E-06 48.8 -0.7 43 58-100 54-104 (133)
42 PLN00071 photosystem I subunit 90.4 0.1 2.2E-06 42.6 0.7 21 58-78 4-24 (81)
43 TIGR02745 ccoG_rdxA_fixG cytoc 89.6 0.12 2.6E-06 55.7 0.5 39 62-100 230-270 (434)
44 PF13746 Fer4_18: 4Fe-4S diclu 89.4 0.14 3.1E-06 41.2 0.7 20 59-78 46-65 (69)
45 PF13183 Fer4_8: 4Fe-4S diclus 89.2 0.15 3.3E-06 38.5 0.7 16 63-78 3-18 (57)
46 TIGR02179 PorD_KorD 2-oxoacid: 89.1 0.13 2.8E-06 41.6 0.2 20 59-78 21-40 (78)
47 COG2768 Uncharacterized Fe-S c 89.0 0.14 3.1E-06 52.4 0.6 54 40-99 176-235 (354)
48 COG1152 CdhA CO dehydrogenase/ 88.9 0.72 1.6E-05 51.0 5.8 37 63-99 400-452 (772)
49 COG1245 Predicted ATPase, RNas 88.9 0.12 2.6E-06 55.9 -0.1 23 56-78 43-65 (591)
50 PF13187 Fer4_9: 4Fe-4S diclus 88.8 0.11 2.3E-06 39.1 -0.4 18 61-78 36-53 (55)
51 PRK09624 porD pyuvate ferredox 88.8 0.12 2.6E-06 44.9 -0.2 41 59-99 47-95 (105)
52 PRK15449 ferredoxin-like prote 88.1 0.21 4.5E-06 43.0 0.9 25 54-78 52-76 (95)
53 COG1146 Ferredoxin [Energy pro 88.1 0.15 3.4E-06 40.4 0.1 41 60-100 5-56 (68)
54 PRK09477 napH quinol dehydroge 88.0 0.19 4.2E-06 50.6 0.7 40 60-99 205-256 (271)
55 COG1141 Fer Ferredoxin [Energy 87.9 0.15 3.3E-06 41.2 -0.0 19 59-77 4-22 (68)
56 PF13459 Fer4_15: 4Fe-4S singl 87.4 0.19 4E-06 39.6 0.2 19 59-77 2-20 (65)
57 COG1139 Uncharacterized conser 87.2 0.25 5.3E-06 52.9 1.0 17 62-78 307-323 (459)
58 TIGR02163 napH_ ferredoxin-typ 87.2 0.21 4.5E-06 50.0 0.4 39 61-99 199-248 (255)
59 PRK09623 vorD 2-ketoisovalerat 86.9 0.23 4.9E-06 43.1 0.4 41 59-99 47-95 (105)
60 PRK02651 photosystem I subunit 86.9 0.32 7E-06 39.6 1.3 18 61-78 7-24 (81)
61 PRK06991 ferredoxin; Provision 86.9 0.25 5.4E-06 50.1 0.8 41 59-99 81-129 (270)
62 TIGR00314 cdhA CO dehydrogenas 86.7 0.2 4.4E-06 57.3 0.0 56 42-99 380-451 (784)
63 PF13484 Fer4_16: 4Fe-4S doubl 86.6 0.28 6E-06 38.4 0.8 15 64-78 1-15 (67)
64 PRK05113 electron transport co 86.6 0.27 5.8E-06 47.3 0.8 42 58-99 109-158 (191)
65 TIGR02060 aprB adenosine phosp 86.3 0.21 4.5E-06 45.4 -0.1 42 58-99 3-59 (132)
66 PRK10194 ferredoxin-type prote 86.1 0.28 6E-06 45.6 0.6 38 62-99 33-80 (163)
67 TIGR00402 napF ferredoxin-type 86.1 0.4 8.8E-06 41.1 1.5 42 59-100 30-81 (101)
68 COG1148 HdrA Heterodisulfide r 85.3 0.27 5.9E-06 53.5 0.1 49 50-99 548-601 (622)
69 PF13370 Fer4_13: 4Fe-4S singl 84.9 0.32 7E-06 37.7 0.3 17 61-77 2-18 (58)
70 COG4231 Indolepyruvate ferredo 84.8 0.43 9.4E-06 53.2 1.4 43 58-100 572-623 (640)
71 COG1149 MinD superfamily P-loo 84.5 0.42 9E-06 48.5 1.0 21 58-78 94-114 (284)
72 TIGR03048 PS_I_psaC photosyste 83.9 0.41 8.9E-06 39.1 0.6 20 59-78 4-23 (80)
73 TIGR02700 flavo_MJ0208 archaeo 83.9 0.33 7.1E-06 47.9 0.0 41 59-99 144-191 (234)
74 COG2221 DsrA Dissimilatory sul 83.7 0.3 6.6E-06 50.3 -0.3 41 58-98 167-214 (317)
75 COG1600 Uncharacterized Fe-S p 83.4 0.52 1.1E-05 49.2 1.2 26 51-78 174-200 (337)
76 PF13237 Fer4_10: 4Fe-4S diclu 83.2 0.43 9.4E-06 35.5 0.4 18 59-76 35-52 (52)
77 TIGR01944 rnfB electron transp 83.0 0.35 7.7E-06 45.2 -0.2 39 58-99 108-157 (165)
78 TIGR02936 fdxN_nitrog ferredox 82.9 0.49 1.1E-05 39.2 0.7 20 59-78 66-85 (91)
79 COG2878 Predicted NADH:ubiquin 82.7 0.3 6.4E-06 46.8 -0.8 40 58-101 110-161 (198)
80 PRK05035 electron transport co 82.4 0.6 1.3E-05 53.2 1.3 39 61-99 368-423 (695)
81 PRK13409 putative ATPase RIL; 81.8 0.51 1.1E-05 52.8 0.5 23 56-78 42-64 (590)
82 TIGR03275 methan_mark_8 putati 81.5 27 0.00059 35.1 12.2 89 139-245 77-171 (259)
83 TIGR03294 FrhG coenzyme F420 h 81.3 0.43 9.2E-06 47.1 -0.3 44 58-101 169-219 (228)
84 PRK09898 hypothetical protein; 81.2 0.51 1.1E-05 45.7 0.2 41 59-99 117-168 (208)
85 PF12838 Fer4_7: 4Fe-4S diclus 80.4 0.47 1E-05 35.4 -0.3 19 59-77 32-50 (52)
86 TIGR01945 rnfC electron transp 80.0 0.93 2E-05 48.8 1.7 19 60-78 360-378 (435)
87 PRK09853 putative selenate red 79.9 0.83 1.8E-05 54.1 1.3 41 60-100 883-941 (1019)
88 PRK13795 hypothetical protein; 79.9 0.52 1.1E-05 53.2 -0.3 41 59-99 577-626 (636)
89 TIGR03224 benzo_boxA benzoyl-C 79.8 0.63 1.4E-05 49.7 0.3 42 58-99 5-53 (411)
90 PRK07569 bidirectional hydroge 79.5 0.6 1.3E-05 46.0 0.1 21 57-77 140-160 (234)
91 TIGR03478 DMSO_red_II_bet DMSO 79.2 0.44 9.5E-06 49.3 -1.0 17 60-76 159-175 (321)
92 PRK07118 ferredoxin; Validated 79.1 0.57 1.2E-05 47.7 -0.3 16 62-77 138-153 (280)
93 KOG3256 NADH:ubiquinone oxidor 78.8 0.68 1.5E-05 43.7 0.2 17 62-78 110-126 (212)
94 cd01916 ACS_1 Acetyl-CoA synth 78.8 0.74 1.6E-05 52.6 0.5 39 61-99 363-417 (731)
95 PRK13984 putative oxidoreducta 78.0 0.99 2.1E-05 50.2 1.2 23 56-78 38-60 (604)
96 TIGR00397 mauM_napG MauM/NapG 77.8 0.78 1.7E-05 44.8 0.3 20 58-77 170-189 (213)
97 COG1146 Ferredoxin [Energy pro 77.2 0.74 1.6E-05 36.5 -0.1 20 59-78 37-56 (68)
98 PLN00071 photosystem I subunit 76.9 0.94 2E-05 36.9 0.5 21 60-80 43-63 (81)
99 TIGR00273 iron-sulfur cluster- 76.7 1 2.2E-05 48.6 0.8 20 59-78 289-308 (432)
100 PF13534 Fer4_17: 4Fe-4S diclu 76.7 0.93 2E-05 34.7 0.4 19 60-78 41-59 (61)
101 PF09872 DUF2099: Uncharacteri 76.1 48 0.001 33.4 12.1 89 139-245 77-171 (258)
102 CHL00065 psaC photosystem I su 75.8 1 2.2E-05 36.8 0.4 22 60-81 43-64 (81)
103 TIGR00397 mauM_napG MauM/NapG 75.7 1.1 2.5E-05 43.6 0.8 40 59-99 127-189 (213)
104 PRK00941 acetyl-CoA decarbonyl 75.3 1.1 2.4E-05 51.5 0.7 39 61-99 402-456 (781)
105 COG1142 HycB Fe-S-cluster-cont 74.9 1.1 2.5E-05 42.2 0.5 24 54-77 73-96 (165)
106 TIGR03149 cyt_nit_nrfC cytochr 74.9 1.1 2.4E-05 44.0 0.5 17 62-78 91-109 (225)
107 COG1150 HdrC Heterodisulfide r 74.8 0.8 1.7E-05 44.2 -0.5 39 40-78 12-54 (195)
108 PRK11274 glcF glycolate oxidas 74.8 1.1 2.4E-05 47.2 0.5 16 62-77 22-37 (407)
109 PRK12809 putative oxidoreducta 74.7 1.2 2.6E-05 50.1 0.7 45 55-99 77-131 (639)
110 TIGR01660 narH nitrate reducta 74.2 0.93 2E-05 49.1 -0.3 40 60-99 178-228 (492)
111 TIGR03287 methan_mark_16 putat 74.2 0.89 1.9E-05 48.4 -0.4 41 59-99 298-344 (391)
112 PRK08764 ferredoxin; Provision 73.6 1.5 3.3E-05 39.6 1.0 40 60-99 82-129 (135)
113 PRK10882 hydrogenase 2 protein 73.6 1.3 2.8E-05 46.2 0.6 41 60-100 107-158 (328)
114 PRK09624 porD pyuvate ferredox 73.5 1 2.2E-05 39.1 -0.1 20 59-78 77-96 (105)
115 PRK09625 porD pyruvate flavodo 73.4 1.3 2.8E-05 40.1 0.5 20 59-78 85-104 (133)
116 CHL00014 ndhI NADH dehydrogena 73.2 1.4 3.1E-05 41.3 0.7 20 59-78 95-114 (167)
117 PF13247 Fer4_11: 4Fe-4S diclu 73.0 0.86 1.9E-05 39.3 -0.7 23 56-78 33-55 (98)
118 TIGR01582 FDH-beta formate deh 72.8 0.98 2.1E-05 46.1 -0.5 41 60-100 88-139 (283)
119 TIGR03315 Se_ygfK putative sel 72.8 2 4.4E-05 51.0 2.0 37 63-99 881-935 (1012)
120 TIGR02912 sulfite_red_C sulfit 72.4 1.5 3.3E-05 45.0 0.8 22 57-78 195-216 (314)
121 TIGR00403 ndhI NADH-plastoquin 72.4 1.5 3.3E-05 41.8 0.7 20 59-78 98-117 (183)
122 PRK14993 tetrathionate reducta 72.3 1 2.2E-05 44.9 -0.5 17 62-78 97-115 (244)
123 PF13183 Fer4_8: 4Fe-4S diclus 71.6 1.2 2.6E-05 33.5 -0.2 16 63-78 41-56 (57)
124 COG0437 HybA Fe-S-cluster-cont 71.2 1.4 3E-05 43.0 0.1 22 56-77 93-114 (203)
125 COG0479 FrdB Succinate dehydro 71.2 1.7 3.6E-05 43.3 0.7 17 62-78 141-157 (234)
126 TIGR03048 PS_I_psaC photosyste 71.2 1.5 3.3E-05 35.7 0.4 20 60-79 42-61 (80)
127 PRK12575 succinate dehydrogena 70.9 1.7 3.7E-05 43.2 0.7 16 62-77 143-158 (235)
128 PRK10194 ferredoxin-type prote 70.6 1.6 3.4E-05 40.6 0.3 13 65-77 106-118 (163)
129 PRK09476 napG quinol dehydroge 70.1 1.2 2.7E-05 44.6 -0.4 41 60-100 134-199 (254)
130 PRK09626 oorD 2-oxoglutarate-a 69.8 1.8 3.8E-05 37.2 0.5 20 59-78 49-68 (103)
131 PRK09476 napG quinol dehydroge 69.8 1.3 2.8E-05 44.5 -0.4 20 59-78 180-199 (254)
132 PRK09623 vorD 2-ketoisovalerat 69.4 1.5 3.2E-05 38.0 -0.1 21 58-78 76-96 (105)
133 PRK14028 pyruvate ferredoxin o 69.3 1.9 4.1E-05 44.2 0.7 18 61-78 287-304 (312)
134 PRK06991 ferredoxin; Provision 69.3 1.4 3E-05 44.8 -0.3 22 59-80 111-132 (270)
135 COG4231 Indolepyruvate ferredo 68.7 1.9 4.2E-05 48.2 0.6 21 58-78 603-623 (640)
136 PRK02651 photosystem I subunit 68.7 1.9 4E-05 35.0 0.4 18 61-78 44-61 (81)
137 PRK05888 NADH dehydrogenase su 68.5 2.2 4.7E-05 39.7 0.9 20 59-78 93-112 (164)
138 TIGR03336 IOR_alpha indolepyru 68.5 1.7 3.7E-05 48.6 0.2 42 58-99 545-592 (595)
139 TIGR01971 NuoI NADH-quinone ox 68.5 2.1 4.5E-05 37.5 0.7 21 58-78 77-97 (122)
140 TIGR03379 glycerol3P_GlpC glyc 67.8 2.6 5.6E-05 44.4 1.3 30 225-254 179-208 (397)
141 PRK06273 ferredoxin; Provision 66.8 2.3 5E-05 40.0 0.6 20 59-78 87-106 (165)
142 PRK00783 DNA-directed RNA poly 66.1 2.1 4.5E-05 42.9 0.2 38 62-99 168-213 (263)
143 TIGR03290 CoB_CoM_SS_C CoB--Co 66.0 2.4 5.2E-05 38.6 0.6 16 63-78 2-17 (144)
144 TIGR00402 napF ferredoxin-type 65.2 2.7 5.9E-05 36.0 0.7 20 59-78 62-81 (101)
145 PRK05352 Na(+)-translocating N 65.0 2.9 6.4E-05 45.4 1.1 17 61-77 372-388 (448)
146 PRK10330 formate dehydrogenase 64.9 2.2 4.7E-05 40.2 0.1 15 63-77 56-72 (181)
147 cd07030 RNAP_D D subunit of Ar 64.6 2.1 4.5E-05 42.8 -0.1 38 62-99 168-213 (259)
148 PRK12769 putative oxidoreducta 63.3 2.8 6E-05 47.3 0.5 23 56-78 78-100 (654)
149 COG1145 NapF Ferredoxin [Energ 63.3 2.7 5.9E-05 34.6 0.4 21 58-78 58-78 (99)
150 PRK10330 formate dehydrogenase 63.2 2.6 5.6E-05 39.7 0.2 20 58-77 5-24 (181)
151 PRK08348 NADH-plastoquinone ox 62.4 2.8 6.2E-05 36.8 0.3 20 59-78 69-88 (120)
152 PF13534 Fer4_17: 4Fe-4S diclu 62.1 3.6 7.8E-05 31.4 0.8 15 64-78 1-15 (61)
153 PRK05113 electron transport co 61.6 2.9 6.3E-05 40.2 0.3 20 59-78 140-159 (191)
154 TIGR02951 DMSO_dmsB DMSO reduc 60.9 2.5 5.4E-05 39.1 -0.3 19 59-77 5-23 (161)
155 TIGR02179 PorD_KorD 2-oxoacid: 60.6 3.7 7.9E-05 33.0 0.7 20 59-78 51-70 (78)
156 TIGR02951 DMSO_dmsB DMSO reduc 60.4 3.3 7.2E-05 38.2 0.4 16 62-77 61-78 (161)
157 TIGR02494 PFLE_PFLC glycyl-rad 60.4 3.2 6.9E-05 41.8 0.3 21 58-78 77-97 (295)
158 TIGR02066 dsrB sulfite reducta 60.2 3.6 7.8E-05 43.1 0.7 21 57-77 208-228 (341)
159 PF13484 Fer4_16: 4Fe-4S doubl 59.8 4.2 9.1E-05 31.6 0.9 15 63-77 52-66 (67)
160 COG3383 Uncharacterized anaero 59.5 4 8.6E-05 46.8 0.9 39 40-78 168-207 (978)
161 TIGR02163 napH_ ferredoxin-typ 59.4 3.5 7.6E-05 41.2 0.4 20 59-78 230-249 (255)
162 PRK08318 dihydropyrimidine deh 59.3 3.4 7.5E-05 44.0 0.4 19 59-77 373-391 (420)
163 TIGR02176 pyruv_ox_red pyruvat 59.2 3.7 8E-05 49.7 0.6 20 59-78 735-754 (1165)
164 TIGR03149 cyt_nit_nrfC cytochr 59.1 2.2 4.7E-05 41.9 -1.1 20 58-77 41-60 (225)
165 TIGR01944 rnfB electron transp 58.8 3.2 7E-05 38.8 0.0 19 60-78 140-158 (165)
166 TIGR02486 RDH reductive dehalo 58.6 5 0.00011 41.6 1.4 28 51-78 191-220 (314)
167 TIGR01656 Histidinol-ppas hist 58.1 52 0.0011 29.5 7.8 74 202-275 32-125 (147)
168 TIGR02060 aprB adenosine phosp 57.9 3.1 6.7E-05 37.8 -0.2 19 60-78 42-60 (132)
169 PRK15033 tricarballylate utili 57.5 4.8 0.0001 42.9 1.1 39 62-100 32-82 (389)
170 TIGR02484 CitB CitB domain pro 56.8 5.1 0.00011 42.5 1.1 40 62-101 13-64 (372)
171 PRK12387 formate hydrogenlyase 56.6 4.3 9.4E-05 38.3 0.5 20 59-78 69-88 (180)
172 PRK09477 napH quinol dehydroge 56.3 5 0.00011 40.4 0.9 19 60-78 239-257 (271)
173 PRK09853 putative selenate red 55.3 4.7 0.0001 48.1 0.6 19 59-77 922-940 (1019)
174 COG1143 NuoI Formate hydrogenl 55.0 5.1 0.00011 38.1 0.7 20 59-78 91-110 (172)
175 TIGR01936 nqrA NADH:ubiquinone 54.3 7.8 0.00017 42.2 2.0 18 60-77 370-387 (447)
176 TIGR00384 dhsB succinate dehyd 54.2 4.8 0.0001 39.2 0.4 17 62-78 193-209 (220)
177 TIGR01660 narH nitrate reducta 53.6 5.2 0.00011 43.6 0.6 25 59-86 210-234 (492)
178 TIGR02910 sulfite_red_A sulfit 53.3 5.3 0.00012 41.8 0.6 18 61-78 299-316 (334)
179 PRK07118 ferredoxin; Validated 53.3 3.8 8.2E-05 41.7 -0.5 38 62-99 212-256 (280)
180 PRK15055 anaerobic sulfite red 53.1 5.2 0.00011 42.0 0.5 17 62-78 306-322 (344)
181 PRK12771 putative glutamate sy 52.8 4.7 0.0001 44.6 0.1 56 44-99 485-555 (564)
182 PRK07570 succinate dehydrogena 52.4 6.1 0.00013 39.6 0.8 19 60-78 154-172 (250)
183 TIGR03290 CoB_CoM_SS_C CoB--Co 52.3 5.8 0.00013 36.0 0.6 15 63-77 46-60 (144)
184 TIGR02700 flavo_MJ0208 archaeo 51.1 5.1 0.00011 39.5 0.0 21 58-78 172-192 (234)
185 PRK08640 sdhB succinate dehydr 51.0 5.9 0.00013 39.7 0.5 16 62-77 151-166 (249)
186 TIGR02066 dsrB sulfite reducta 50.7 5.3 0.00011 41.9 0.1 32 65-99 183-228 (341)
187 TIGR00384 dhsB succinate dehyd 50.1 6 0.00013 38.6 0.3 17 62-78 137-153 (220)
188 PRK08764 ferredoxin; Provision 49.9 6.7 0.00015 35.5 0.6 20 59-78 111-130 (135)
189 COG3383 Uncharacterized anaero 49.8 4.8 0.0001 46.2 -0.4 16 61-76 147-162 (978)
190 PRK08222 hydrogenase 4 subunit 49.6 6.6 0.00014 37.3 0.5 19 60-78 70-88 (181)
191 PRK13030 2-oxoacid ferredoxin 48.3 7.4 0.00016 47.0 0.8 44 398-441 1049-1098(1159)
192 COG1941 FrhG Coenzyme F420-red 48.2 7 0.00015 39.1 0.5 21 58-78 184-205 (247)
193 TIGR02512 Fe_only_hydrog hydro 47.5 10 0.00022 40.0 1.6 20 59-78 46-65 (374)
194 TIGR03287 methan_mark_16 putat 47.5 5.4 0.00012 42.6 -0.5 20 59-78 326-345 (391)
195 COG2878 Predicted NADH:ubiquin 47.3 8.3 0.00018 37.2 0.8 21 61-81 143-163 (198)
196 TIGR03478 DMSO_red_II_bet DMSO 47.2 6 0.00013 41.2 -0.2 40 60-99 126-176 (321)
197 PRK12577 succinate dehydrogena 46.9 10 0.00022 39.5 1.4 15 63-77 152-166 (329)
198 COG4656 RnfC Predicted NADH:ub 46.7 7 0.00015 43.1 0.2 15 64-78 366-380 (529)
199 PRK12576 succinate dehydrogena 46.4 7.8 0.00017 39.4 0.5 18 61-78 150-167 (279)
200 TIGR03224 benzo_boxA benzoyl-C 46.3 6.8 0.00015 41.9 0.1 22 59-80 35-56 (411)
201 PRK07570 succinate dehydrogena 45.4 8.3 0.00018 38.7 0.5 16 63-78 212-227 (250)
202 PRK14993 tetrathionate reducta 45.4 4.9 0.00011 40.1 -1.1 20 58-77 46-65 (244)
203 PRK12385 fumarate reductase ir 45.3 8.3 0.00018 38.5 0.5 17 62-78 146-162 (244)
204 PRK12576 succinate dehydrogena 44.7 8.2 0.00018 39.3 0.4 16 63-78 206-221 (279)
205 PRK05950 sdhB succinate dehydr 44.5 8.8 0.00019 37.7 0.6 16 63-78 198-213 (232)
206 PRK11168 glpC sn-glycerol-3-ph 44.3 8.6 0.00019 40.3 0.5 18 61-78 5-22 (396)
207 PRK05035 electron transport co 44.2 8.5 0.00018 44.1 0.4 18 61-78 407-424 (695)
208 PF13419 HAD_2: Haloacid dehal 44.1 1.3E+02 0.0029 26.1 8.1 72 202-275 82-157 (176)
209 PRK09326 F420H2 dehydrogenase 43.9 10 0.00022 39.4 1.0 19 60-78 50-68 (341)
210 PRK13552 frdB fumarate reducta 43.7 8.9 0.00019 38.1 0.4 16 62-77 148-163 (239)
211 PLN00129 succinate dehydrogena 43.4 8.9 0.00019 39.1 0.4 14 64-77 188-201 (276)
212 TIGR01582 FDH-beta formate deh 43.4 9.1 0.0002 39.2 0.5 23 56-78 117-139 (283)
213 PRK09193 indolepyruvate ferred 43.1 10 0.00022 45.9 0.8 44 397-440 1055-1104(1165)
214 TIGR01668 YqeG_hyp_ppase HAD s 42.8 1.1E+02 0.0024 28.2 7.6 68 201-274 47-114 (170)
215 PRK07569 bidirectional hydroge 42.6 11 0.00024 37.1 0.9 20 59-78 186-205 (234)
216 PRK12386 fumarate reductase ir 42.4 9.6 0.00021 38.3 0.4 16 62-77 141-156 (251)
217 TIGR03294 FrhG coenzyme F420 h 42.3 7.1 0.00015 38.5 -0.5 21 58-78 198-218 (228)
218 PRK15033 tricarballylate utili 41.9 9.2 0.0002 40.8 0.2 17 61-77 65-81 (389)
219 TIGR01973 NuoG NADH-quinone ox 41.2 10 0.00022 42.4 0.5 44 58-101 137-198 (603)
220 PRK08493 NADH dehydrogenase su 41.1 17 0.00037 42.5 2.2 19 62-80 203-221 (819)
221 PRK09898 hypothetical protein; 40.9 11 0.00025 36.3 0.7 39 58-99 149-195 (208)
222 PRK11274 glcF glycolate oxidas 40.9 11 0.00023 39.9 0.5 17 62-78 72-88 (407)
223 TIGR03336 IOR_alpha indolepyru 40.6 10 0.00023 42.4 0.4 19 59-78 575-593 (595)
224 PRK13029 2-oxoacid ferredoxin 40.5 11 0.00025 45.5 0.7 44 398-441 1079-1128(1186)
225 PRK12771 putative glutamate sy 40.2 9.1 0.0002 42.4 -0.1 21 58-78 536-556 (564)
226 PRK10882 hydrogenase 2 protein 39.7 12 0.00025 39.2 0.6 23 56-78 136-158 (328)
227 PRK08640 sdhB succinate dehydr 39.6 11 0.00025 37.6 0.5 16 63-78 209-224 (249)
228 PRK05950 sdhB succinate dehydr 39.2 11 0.00025 36.9 0.4 16 62-77 140-155 (232)
229 TIGR00273 iron-sulfur cluster- 38.6 11 0.00023 40.9 0.2 16 63-78 343-358 (432)
230 PRK08493 NADH dehydrogenase su 38.2 14 0.00029 43.3 0.9 19 58-76 136-154 (819)
231 PRK12385 fumarate reductase ir 38.0 12 0.00027 37.3 0.4 16 63-78 203-218 (244)
232 PRK07860 NADH dehydrogenase su 37.9 12 0.00026 43.5 0.4 19 58-76 145-163 (797)
233 KOG3256 NADH:ubiquinone oxidor 37.8 12 0.00026 35.5 0.3 19 60-78 147-165 (212)
234 PRK09129 NADH dehydrogenase su 37.4 13 0.00028 43.0 0.5 18 59-76 140-157 (776)
235 TIGR01945 rnfC electron transp 37.3 15 0.00033 39.6 1.0 18 61-78 400-417 (435)
236 PRK12575 succinate dehydrogena 37.0 13 0.00028 37.0 0.4 16 63-78 201-216 (235)
237 PRK12577 succinate dehydrogena 36.9 13 0.00028 38.7 0.4 16 63-78 209-224 (329)
238 PTZ00305 NADH:ubiquinone oxido 36.7 18 0.0004 37.2 1.5 48 59-106 208-274 (297)
239 PRK11168 glpC sn-glycerol-3-ph 36.7 14 0.0003 38.8 0.6 18 61-78 52-69 (396)
240 TIGR02484 CitB CitB domain pro 36.5 12 0.00026 39.8 0.1 16 62-77 47-62 (372)
241 COG0247 GlpC Fe-S oxidoreducta 36.5 13 0.00027 38.6 0.2 17 62-78 8-24 (388)
242 KOG0063 RNAse L inhibitor, ABC 36.2 11 0.00025 41.0 -0.1 24 53-77 41-64 (592)
243 TIGR03315 Se_ygfK putative sel 35.2 14 0.0003 44.2 0.3 15 64-78 922-936 (1012)
244 PRK01221 putative deoxyhypusin 35.0 67 0.0015 33.5 5.2 76 120-223 56-131 (312)
245 TIGR02064 dsrA sulfite reducta 34.9 15 0.00034 39.3 0.6 13 256-268 358-370 (402)
246 TIGR01428 HAD_type_II 2-haloal 34.3 3.7E+02 0.0081 24.7 9.9 73 201-275 96-172 (198)
247 TIGR03379 glycerol3P_GlpC glyc 34.1 16 0.00035 38.4 0.6 18 61-78 50-67 (397)
248 PRK06259 succinate dehydrogena 33.4 16 0.00035 39.7 0.4 18 61-78 131-148 (486)
249 COG2221 DsrA Dissimilatory sul 32.7 14 0.00029 38.5 -0.2 21 57-77 195-215 (317)
250 TIGR00314 cdhA CO dehydrogenas 32.3 14 0.00029 42.9 -0.3 17 62-78 436-452 (784)
251 PRK12769 putative oxidoreducta 32.0 13 0.00028 42.0 -0.6 20 58-77 5-24 (654)
252 PRK12386 fumarate reductase ir 31.8 20 0.00042 36.1 0.7 17 62-78 199-215 (251)
253 PRK13552 frdB fumarate reducta 31.6 18 0.00039 36.0 0.4 16 63-78 206-221 (239)
254 PRK13984 putative oxidoreducta 31.5 18 0.00039 40.3 0.4 16 63-78 185-200 (604)
255 PRK12809 putative oxidoreducta 31.2 24 0.00053 39.8 1.4 41 59-99 50-99 (639)
256 PRK15055 anaerobic sulfite red 30.7 19 0.00042 37.9 0.5 15 63-77 226-240 (344)
257 COG1152 CdhA CO dehydrogenase/ 30.7 15 0.00033 41.1 -0.2 17 62-78 437-453 (772)
258 TIGR02252 DREG-2 REG-2-like, H 30.4 2.6E+02 0.0056 25.9 8.1 70 202-274 110-183 (203)
259 PRK00941 acetyl-CoA decarbonyl 30.2 17 0.00036 42.2 -0.1 17 62-78 441-457 (781)
260 PRK09130 NADH dehydrogenase su 30.0 22 0.00047 40.8 0.8 17 60-76 142-158 (687)
261 TIGR02253 CTE7 HAD superfamily 29.4 3E+02 0.0065 25.7 8.4 72 202-275 99-174 (221)
262 COG0437 HybA Fe-S-cluster-cont 29.1 16 0.00035 35.7 -0.3 21 58-78 13-33 (203)
263 TIGR01662 HAD-SF-IIIA HAD-supe 28.0 3.9E+02 0.0084 22.9 8.6 73 201-275 29-110 (132)
264 COG4656 RnfC Predicted NADH:ub 27.8 20 0.00044 39.6 0.1 36 42-78 384-419 (529)
265 TIGR02910 sulfite_red_A sulfit 27.6 23 0.00051 37.1 0.5 16 62-77 219-234 (334)
266 COG1139 Uncharacterized conser 27.3 23 0.00049 38.4 0.3 16 62-77 357-372 (459)
267 PRK13795 hypothetical protein; 27.2 22 0.00048 40.3 0.2 20 59-78 608-627 (636)
268 PF12641 Flavodoxin_3: Flavodo 27.2 3.5E+02 0.0076 25.2 8.2 52 213-264 66-124 (160)
269 COG3640 CooC CO dehydrogenase 27.0 5.8E+02 0.013 25.9 10.0 21 138-159 15-36 (255)
270 TIGR01509 HAD-SF-IA-v3 haloaci 26.9 2.5E+02 0.0054 25.1 7.1 71 202-275 90-164 (183)
271 PRK06769 hypothetical protein; 25.9 3.2E+02 0.0068 25.3 7.7 74 202-275 33-117 (173)
272 COG1899 DYS1 Deoxyhypusine syn 25.8 1.3E+02 0.0029 31.4 5.4 77 121-226 57-134 (318)
273 COG1453 Predicted oxidoreducta 25.5 25 0.00054 37.4 0.2 20 61-80 349-368 (391)
274 PLN00129 succinate dehydrogena 25.3 27 0.00058 35.7 0.4 18 61-78 242-259 (276)
275 cd01916 ACS_1 Acetyl-CoA synth 25.1 21 0.00046 41.2 -0.4 17 62-78 402-418 (731)
276 PRK10826 2-deoxyglucose-6-phos 25.0 2E+02 0.0044 27.2 6.4 71 202-275 97-172 (222)
277 TIGR00321 dhys deoxyhypusine s 24.9 2.2E+02 0.0048 29.6 6.9 85 120-235 47-131 (301)
278 PRK08166 NADH dehydrogenase su 24.3 26 0.00057 40.9 0.1 19 58-76 144-162 (847)
279 COG1453 Predicted oxidoreducta 23.6 35 0.00076 36.3 0.9 13 65-78 295-307 (391)
280 TIGR01449 PGP_bact 2-phosphogl 22.9 4.1E+02 0.0089 24.6 8.0 71 202-274 90-164 (213)
281 TIGR01454 AHBA_synth_RP 3-amin 22.9 4.5E+02 0.0098 24.4 8.3 73 201-275 79-155 (205)
282 PRK02301 putative deoxyhypusin 22.7 2.1E+02 0.0045 29.9 6.3 85 120-235 59-144 (316)
283 PF14297 DUF4373: Domain of un 22.2 73 0.0016 26.4 2.4 63 403-466 9-74 (87)
284 COG2440 FixX Ferredoxin-like p 22.1 29 0.00062 30.2 -0.1 40 60-99 30-79 (99)
285 PRK06259 succinate dehydrogena 22.0 36 0.00078 37.0 0.6 17 62-78 184-200 (486)
286 PHA00490 terminal protein 21.9 1.7E+02 0.0036 29.0 5.0 107 347-464 94-224 (266)
287 cd07030 RNAP_D D subunit of Ar 21.7 31 0.00067 34.5 0.0 34 44-77 179-213 (259)
288 PRK00805 putative deoxyhypusin 21.6 2.1E+02 0.0046 30.1 6.1 86 120-235 48-133 (329)
289 PF04127 DFP: DNA / pantothena 20.8 1.8E+02 0.004 27.7 5.1 51 132-192 25-75 (185)
290 TIGR01318 gltD_gamma_fam gluta 20.4 16 0.00035 39.5 -2.4 40 40-79 17-58 (467)
291 PF10387 DUF2442: Protein of u 20.3 1.6E+02 0.0035 23.7 4.0 29 271-299 1-29 (79)
292 PRK13288 pyrophosphatase PpaX; 20.2 4.2E+02 0.009 24.8 7.5 71 202-274 87-161 (214)
No 1
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=100.00 E-value=2.1e-52 Score=417.51 Aligned_cols=243 Identities=28% Similarity=0.457 Sum_probs=210.6
Q ss_pred CCccceeEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhh
Q 011872 115 LGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAA 192 (475)
Q Consensus 115 ~G~~~~~y~a~s~d~--r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~ 192 (475)
||+|..+|+||++|+ |.+|||||++|+|+.++||+|.|||||+++ ..+++|+++|++++|+|||.++
T Consensus 1 ~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~IDgvv~~~-----------~~~~~~~~~~~~~~~~eel~~~ 69 (275)
T TIGR03289 1 LGPYKEIVSARSTDNEVLKKAQDGGIVSAILIYALEENIIDGAIVAG-----------PGDEPWKPEPLVATTPEEILKA 69 (275)
T ss_pred CCceeEEEEEEcCCccccccCCcHHHHHHHHHHHHHcCCccEEEEEe-----------cCCCCCceeEEEECCHHHHHHh
Confidence 699999999999987 889999999999999999999999999975 4578899999999999999999
Q ss_pred cCCCCcccCchHHHHHHHH-cCCCEEEEEecchHHHHHHHHHHh-----cCCCc-eEEEcccCCCCCCHHHHHHHHHH-h
Q 011872 193 KGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEHH-----LNLEK-LYVLGTNCVDNGTREGLDKFLKA-A 264 (475)
Q Consensus 193 ~GSKY~~S~~l~~l~ev~~-~g~kkVlfvGtPCQI~ALr~l~~~-----l~~e~-Ly~Igl~C~G~~S~~~~~~~L~~-~ 264 (475)
+||||+||++++.|+++.+ .+.++||||||||||+|||+++++ ...++ +|+|||+|||+||++.|.+||++ .
T Consensus 70 ~GSkY~~s~~~~~l~~~~~~~~~~~va~vGtPCqi~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~ 149 (275)
T TIGR03289 70 AGTKYTVCPNLSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKC 149 (275)
T ss_pred cCCcccCCccHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999753 457999999999999999999863 12367 59999999999999999999976 5
Q ss_pred CCCCCceEEEEEEeCcEEEEEEecCcEEeeccccccccccccccCCCCccCcCCCCCCCcEEeeeccCCCCCCccCCCCc
Q 011872 265 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 344 (475)
Q Consensus 265 ~~~~~~V~~i~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADITiG~~G~~~~~G~S~~~g~ 344 (475)
++++++|.+++||. |.+++.+.||+++.+|+... ..+.|++|+.|+|+++++||||+|++|.+. |+|
T Consensus 150 g~~~~~v~~~~~r~-g~~~v~~~dg~~~~~~~~~~-----~~~~r~~C~~C~D~~~~~ADIsvGd~~~~~--G~s----- 216 (275)
T TIGR03289 150 GVTMEQVTKMDIGK-GKFWVYTTGGEVGKIPLKET-----HGYEQAGCHVCMDYVAELADISTGSVGSPD--GWS----- 216 (275)
T ss_pred CCCHHHccEEEeEC-CcEEEEECCCcEEEEEhHHh-----hhhcCCCCccCCCCCCcccceeeeccCCCC--Cce-----
Confidence 88899999999995 56778899999877764443 457899999999999999999999888775 655
Q ss_pred eEEEEeChHHHHHHHHhh--ccceeccCCCCCCCCHHHHH
Q 011872 345 QYITVRNERGKEMLSLVK--NLLEITPTISSGDRRPFVME 382 (475)
Q Consensus 345 ~~VlVrTekG~~Ll~~~~--~~le~~~~~~~g~~~~~~~~ 382 (475)
+|+|||++|++||+.+. +.++..+++......+.+.+
T Consensus 217 -~VivrT~kG~~ll~~a~~~g~ie~~~~~~~~~~~~~l~~ 255 (275)
T TIGR03289 217 -TVIIRTDKGESIINKAVEAGILETKPIEEVKPGLELLEK 255 (275)
T ss_pred -EEEEECHHHHHHHHHHHHcCceeecccccccccHHHHHH
Confidence 99999999999999997 56888887654443444433
No 2
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=100.00 E-value=1.1e-52 Score=430.97 Aligned_cols=276 Identities=24% Similarity=0.414 Sum_probs=226.7
Q ss_pred CCCCCCCccCCchhhcchhhhhhhhh---c----------------CCCCcccccccCccccCCCCCCCCCCCCcCCccc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDACA---F----------------LGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHE 119 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~~---f----------------~~~G~~~c~~vCp~~~~r~~~~~~~~e~~~G~~~ 119 (475)
+++.+.|+|||+|.++||...+..-. + .-.+|+.|.++||.++... +..++.+.
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~~~-------~~~i~~~~ 80 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDGYI-------EDELANVR 80 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcccc-------cccccchh
Confidence 67788999999999999965322110 0 0114678999999765322 22355566
Q ss_pred eeEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCcc
Q 011872 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTL 199 (475)
Q Consensus 120 ~~y~a~s~d~r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~ 199 (475)
..|++++ +..|||||++|+|+.++|++|+||+|++++ .++.|+++|++++|+|||.+++||||++
T Consensus 81 ~~yaa~~---~~~s~sGG~~t~l~~~~L~~g~Vd~V~~~~------------~~~~~~~~~~~~~~~eel~~~~gSkY~~ 145 (341)
T PRK09326 81 KFFGARS---NIGGQDGGVTSAILKSLLKQGEIDCAVGIT------------RNEKWETELVLLTSAEDVERTRGTKYTY 145 (341)
T ss_pred heeeecc---ccccccccHHHHHHHHHHHcCCccEEEEec------------cCCCccceeEEECCHHHHHHhcCCcccC
Confidence 8888887 679999999999999999999999999875 3567999999999999999999999999
Q ss_pred cCchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHH-HHHHHH-hCCCCCceEEEEEE
Q 011872 200 SPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGL-DKFLKA-ASSEPETVLHYEFM 277 (475)
Q Consensus 200 S~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~-~~~L~~-~~~~~~~V~~i~FR 277 (475)
+++++.|+++.+. ++|||||||||||+|||++++.++.+++|+|||+|.|++.+... .+|+++ +++++++|.+++||
T Consensus 146 s~~~~~l~~~~~~-~~kVa~vG~PCqi~alr~~~~~~~~~~l~~Igl~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~r 224 (341)
T PRK09326 146 DSVLSALREPFEK-YDRIAVIGVPCQAHGARLIRENVNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVVKMDFT 224 (341)
T ss_pred cchHHHHHHHHhc-CCeEEEEcCchhHHHHHHHHhhcccceEEEEccccCCCCChhHHHHHHHHHhcCCCHHHeeEEEEE
Confidence 9999999998765 69999999999999999998766677999999999888777554 467765 57788999999999
Q ss_pred eCcEEEEEEecCcEEeeccccccccccccccCCCCccCcCCCCCCCcEEeeeccCCCCCCccCCCCceEEEEeChHHHHH
Q 011872 278 QDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEM 357 (475)
Q Consensus 278 ~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADITiG~~G~~~~~G~S~~~g~~~VlVrTekG~~L 357 (475)
++ .+++.+.||++..+|+. +++.++|++|+.|.|+++++||||+|+.|.|. |+| +|+|||+||++|
T Consensus 225 ~~-~~~~~~~~g~~~~~~~~-----~~~~~~r~~C~~C~D~~~~~aDIsiGd~g~~~--G~s------~vivrt~kG~~l 290 (341)
T PRK09326 225 KG-KFWAYTKDGEVHSVPIK-----DVAKYARNPCHHCCDYTSVFADISVGSVGAPD--GWN------SVLIRTDIGEKY 290 (341)
T ss_pred CC-EEEEEEcCCcEEEeEHH-----HhhHhhcCCCccccccCCcccceeeeccCCCC--ceE------EEEEeChHHHHH
Confidence 54 57777889987665443 34567999999999999999999999777664 555 999999999999
Q ss_pred HHHhhccceeccCC
Q 011872 358 LSLVKNLLEITPTI 371 (475)
Q Consensus 358 l~~~~~~le~~~~~ 371 (475)
|+.+++.+++.+.+
T Consensus 291 ~~~a~~~~~~~~~~ 304 (341)
T PRK09326 291 FKMVRDELEIMEDP 304 (341)
T ss_pred HHHHHHhccccccC
Confidence 99999887776654
No 3
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.3e-52 Score=422.12 Aligned_cols=272 Identities=33% Similarity=0.530 Sum_probs=231.1
Q ss_pred CCCCCCccCCchhhcchhhhhh----hhhcCCC----CcccccccCccccCCCCCCCCCCCCcCCccceeEEEEccCC--
Q 011872 60 PAKDHCSRCGLCDTYYIAHVKD----ACAFLGD----GMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKP-- 129 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~~~----a~~f~~~----G~~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~y~a~s~d~-- 129 (475)
.+.++|++||+|.++||- .+- .+.|..+ |+..|.++||.+. .|.|..+|.+++++.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~~~~~~~~~c~~~~~~~~~~~cp~~~-------------~~~y~~~~~~~~~~~~~ 67 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERDEAPLLIEECMDNGHGTCLKVCPEVD-------------EGKYGEVYEARSTDSKL 67 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEecccchhhhhhhcccchHHhhhCcccc-------------cccchheeeeeecchhh
Confidence 457899999999999995 111 1222211 3446677777533 456788899999887
Q ss_pred ccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCcccCchHHHHHH
Q 011872 130 VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV 209 (475)
Q Consensus 130 r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev 209 (475)
+..+||||++|+|++|+|++|.|||||++. +.+++|+|+|++++|+|||.+.+||||..+|++..|+++
T Consensus 68 ~~~aqdGG~VT~il~yaLe~gliDgvv~v~-----------~~~~~~kp~p~va~t~eel~~tagsky~~~~~l~~L~ea 136 (332)
T COG1035 68 RKGAQDGGVVTAILAYALEEGLIDGVVVVG-----------SGEEEWKPIPVVATTPEELLETAGSKYTISPNLSALKEA 136 (332)
T ss_pred cccCCCcchHHHHHHHHHHcCCceEEEEeC-----------CCccccCCeeEEecChHHHHHhcCCcccCchhHHHHHHH
Confidence 778999999999999999999999999985 578899999999999999999999999999999999997
Q ss_pred H-HcCCCEEEEEecchHHHHHHHHHHhcC-C-----CceEEEcccCCCCCCHHHHHHHHHHh-CCCCCceEEEEEEeCcE
Q 011872 210 E-AAGVKRLLFCGVGCQVQALRSVEHHLN-L-----EKLYVLGTNCVDNGTREGLDKFLKAA-SSEPETVLHYEFMQDYK 281 (475)
Q Consensus 210 ~-~~g~kkVlfvGtPCQI~ALr~l~~~l~-~-----e~Ly~Igl~C~G~~S~~~~~~~L~~~-~~~~~~V~~i~FR~~g~ 281 (475)
. +.+.+||||||+||||+|+|+++++.. . +++|+|||||.+++++..+.+||+.. ++++.+|.+++++ +|+
T Consensus 137 ~~~~g~~rvavvG~PC~i~avrk~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k~di~-kGk 215 (332)
T COG1035 137 VRKYGLERVAVVGTPCQIQAVRKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIR-KGK 215 (332)
T ss_pred HhhcCCceEEEeecchHHHHHHHHhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEEEEee-Cce
Confidence 6 555579999999999999999988532 2 25899999999999999999999985 8999999999985 899
Q ss_pred EEEEEecCcEEeeccccccccccccccCCCCccCcCCCCCCCcEEeeeccCCCCCCccCCCCceEEEEeChHHHHHHHHh
Q 011872 282 VHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLV 361 (475)
Q Consensus 282 ~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADITiG~~G~~~~~G~S~~~g~~~VlVrTekG~~Ll~~~ 361 (475)
+++++.||++.. +++++++.+.+++|+.|.|+++++|||++|+||+|+ ||| +|+|||++|+++|+.+
T Consensus 216 ~~v~~~dG~~~~-----~~l~e~e~~~~~gC~~C~D~~a~~ADiSvGsvGsP~--Gw~------tVlVRt~~g~~i~~~a 282 (332)
T COG1035 216 FVVELKDGEVKE-----IPLKETEEYGPEGCRVCTDFVAELADISVGSVGSPD--GWS------TVLVRTEKGEEILDGA 282 (332)
T ss_pred EEEEecCCcEEE-----EEhhhhhcccCCCCeehhhccccccccccccccCCC--cee------EEEEecchHHHHHHHH
Confidence 999999998766 356777778889999999999999999999999996 655 9999999999999999
Q ss_pred h--ccceeccC
Q 011872 362 K--NLLEITPT 370 (475)
Q Consensus 362 ~--~~le~~~~ 370 (475)
. +.|+.++.
T Consensus 283 v~~g~le~k~~ 293 (332)
T COG1035 283 VEAGLLEVKEI 293 (332)
T ss_pred Hhccceeeecc
Confidence 8 45655443
No 4
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=100.00 E-value=3.6e-51 Score=410.05 Aligned_cols=234 Identities=31% Similarity=0.522 Sum_probs=205.9
Q ss_pred cCCccceeEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHh
Q 011872 114 YLGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLA 191 (475)
Q Consensus 114 ~~G~~~~~y~a~s~d~--r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~ 191 (475)
.||+|+++|+||++|+ |.+|||||++|+|+.++|++|.|||||+++ ..+++|+++|++++|+|||.+
T Consensus 2 ~~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~VDgvv~~~-----------~~~~~~~~~~~~a~~~eel~~ 70 (282)
T PRK09325 2 PFGKYKEVVSARSTDKEILKKAQDGGIVTALLIYALEEGIIDGVIVAG-----------DGEEPWKPVPKVATTPEEILE 70 (282)
T ss_pred CccchheeEEEecCCccccccCCcHHHHHHHHHHHHHcCCccEEEEec-----------CCCCCCCceeEEECCHHHHHH
Confidence 5899999999999987 889999999999999999999999999975 457789999999999999999
Q ss_pred hcCCCCcccCchHHHHHHHH-cCCCEEEEEecchHHHHHHHHHHh-cC----CCce-EEEcccCCCCCCHHHHHHHHHH-
Q 011872 192 AKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEHH-LN----LEKL-YVLGTNCVDNGTREGLDKFLKA- 263 (475)
Q Consensus 192 ~~GSKY~~S~~l~~l~ev~~-~g~kkVlfvGtPCQI~ALr~l~~~-l~----~e~L-y~Igl~C~G~~S~~~~~~~L~~- 263 (475)
++||||+||++++.++++.+ .+.+|||||||||||+|||+++++ ++ .+++ |+|||+|||+|+++.+++||++
T Consensus 71 ~~GSkY~~s~~~~~~~~~l~~~~~~kva~VGtPCqI~alr~l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~ 150 (282)
T PRK09325 71 AAGTKYTISPNVSVLKEAVREYGLDKVGIVGTPCQIQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDH 150 (282)
T ss_pred hcCCcccCCchHHHHHHHHHhcCCCeEEEEccChHHHHHHHHHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHH
Confidence 99999999999999998764 356999999999999999999853 11 2677 9999999999999999999998
Q ss_pred hCCCCCceEEEEEEeCcEEEEEEecCcEEeeccccccccccccccCCCCccCcCCCCCCCcEEeeeccCCCCCCccCCCC
Q 011872 264 ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQH 343 (475)
Q Consensus 264 ~~~~~~~V~~i~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADITiG~~G~~~~~G~S~~~g 343 (475)
++.++++|.+++||+ +.+++.+.||+++.+| +++++.+.|++|+.|.|.++++||||+|++|.+. |+|
T Consensus 151 ~g~~~~~v~~~~~r~-g~~~v~~~~g~~~~~~-----~~~~~~~~r~~C~~C~d~~~~~ADIsvGd~~~~~--G~s---- 218 (282)
T PRK09325 151 CGVKMEDVKKMDIGK-GKFWVYTKRGDVKTIP-----LKETHKYEQPGCHVCTDYTAELADISTGSVGSPD--GWS---- 218 (282)
T ss_pred hCCCHHHeeEEEEeC-CeEEEEEcCCcEEEeE-----HHHhhhhcCCCCcCCcCCCCCcccEeeeccCCCC--Cce----
Confidence 688899999999995 4566777899887754 4444567899999999999999999999877764 655
Q ss_pred ceEEEEeChHHHHHHHHhh--ccceeccCCC
Q 011872 344 PQYITVRNERGKEMLSLVK--NLLEITPTIS 372 (475)
Q Consensus 344 ~~~VlVrTekG~~Ll~~~~--~~le~~~~~~ 372 (475)
+|+|||++|++||+.+. +.++..+++.
T Consensus 219 --~vivrt~kG~~ll~~a~~~g~i~~~~~~~ 247 (282)
T PRK09325 219 --TVFVRTKKGEEIFNKAVEAGLLETKPIEE 247 (282)
T ss_pred --EEEEEChHHHHHHHHHHHcCceEeccCcc
Confidence 99999999999999997 5688887664
No 5
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=100.00 E-value=1.1e-33 Score=261.71 Aligned_cols=150 Identities=33% Similarity=0.550 Sum_probs=130.2
Q ss_pred cCCCEEEEEecchHHHHHHHHHHhc---CCCceEEEcccCCCCCCHHHHHHHHHH-hCCCCCceEEEEEEeCcEEEEEEe
Q 011872 212 AGVKRLLFCGVGCQVQALRSVEHHL---NLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHL 287 (475)
Q Consensus 212 ~g~kkVlfvGtPCQI~ALr~l~~~l---~~e~Ly~Igl~C~G~~S~~~~~~~L~~-~~~~~~~V~~i~FR~~g~~~i~~~ 287 (475)
++++|||||||||||+|||+++++. ..+++|+|||+|||+||++.|++||+. ++.++++|.+++||+ ||+.+++.
T Consensus 2 ~~~~kV~~vG~PCqi~al~~~~~~~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~-g~~~i~~~ 80 (161)
T PF04432_consen 2 QGGKKVAFVGTPCQIAALRKLLKRNYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD-GWFIITTK 80 (161)
T ss_pred CCCCEEEEEeccHHHHHHHHHHhhCcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC-CeEEEEEe
Confidence 4579999999999999999998852 124789999999999999999999998 589999999999997 88999888
Q ss_pred cCcEEeeccccccccccccccCCCCccCcCCCCCCCcEEeeeccCCCCCCccCCCCceEEEEeChHHHHHHHHhh--ccc
Q 011872 288 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLL 365 (475)
Q Consensus 288 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADITiG~~G~~~~~G~S~~~g~~~VlVrTekG~~Ll~~~~--~~l 365 (475)
||+..++|+.+ ++.+.|++|+.|.|.+++.||||+|+||.++ |+| +|+|||+||++||+.++ +++
T Consensus 81 ~g~~~~~~~~~-----~~~~~r~~C~~C~d~~~~~aDIsiGd~~~~~--G~S------~vivrt~kG~~l~~~~~~~~~l 147 (161)
T PF04432_consen 81 DGKEKEIPLKE-----LGFFLRPSCYICPDFTPERADISIGDWGDPK--GWS------LVIVRTEKGEELLEEAKENGYL 147 (161)
T ss_pred CCCEEEEehHH-----hCCccCCccccCCCCCCCcCCEEEEeCCCCC--ceE------EEEEECHHHHHHHHHHHHCCcE
Confidence 99877765443 3568999999999999999999999998874 666 99999999999999998 569
Q ss_pred eeccCCCCCC
Q 011872 366 EITPTISSGD 375 (475)
Q Consensus 366 e~~~~~~~g~ 375 (475)
|+.|.+..+-
T Consensus 148 e~~~~~~~~~ 157 (161)
T PF04432_consen 148 ELKPIEPEKA 157 (161)
T ss_pred EecCCChhhh
Confidence 9998875543
No 6
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=99.83 E-value=1.8e-20 Score=155.52 Aligned_cols=80 Identities=41% Similarity=0.588 Sum_probs=75.1
Q ss_pred ceeEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCC
Q 011872 119 EELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVK 196 (475)
Q Consensus 119 ~~~y~a~s~d~--r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSK 196 (475)
+++|+||++|+ |.++||||++|+|+.++||+|+||+||+++ .+++++|+++|++++|+|||.+++|||
T Consensus 1 ~~~y~a~s~d~~ir~~~~sGG~vTaLl~~lLe~g~Vd~vv~~~----------~~~~~~~~~~~~i~~~~eel~~~aGSk 70 (82)
T PF04422_consen 1 KEVYAARSTDEEIREKSQSGGVVTALLAYLLESGLVDGVVVVG----------RDDDDPWRPEPVIATSPEELLKAAGSK 70 (82)
T ss_pred CcEEEEEcCChhhcccCCcHHHHHHHHHHHHHcCCceEEEEEe----------ecCCCCcceEEEEECCHHHHHHHcCCc
Confidence 36899999998 999999999999999999999999999987 677789999999999999999999999
Q ss_pred CcccCchHHHHH
Q 011872 197 PTLSPNLNTLAL 208 (475)
Q Consensus 197 Y~~S~~l~~l~e 208 (475)
|.++|++..|+|
T Consensus 71 Y~~~~~~~~Lke 82 (82)
T PF04422_consen 71 YSPSPVLSALKE 82 (82)
T ss_pred eeccchHHHhcC
Confidence 999999988864
No 7
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.14 E-value=0.00013 Score=57.11 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCCCCCccCCchhhcchhhhhhhhhcCCC-----------CcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~~f~~~-----------G~~~c~~vCp~ 99 (475)
.++.++|.|||.|...||.+..+++.+... ||+.|..+||.
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEGKKVPVNPDKCIGCGLCVKVCPV 53 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTTTSSECE-TT--S-SCCCCCSSS
T ss_pred EECcccccChhhHHhHcCccceeeEEecCCeeEEeccccCcCcCcccccCCC
Confidence 467899999999999999754444433322 67889999994
No 8
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.72 E-value=0.00046 Score=65.26 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=32.6
Q ss_pred CCCCCCCCCCccCCchhhcchhhhhhhhhcCCC--C----------------cccccccCccc
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD--G----------------MSRIEGLETVV 100 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~~~~a~~f~~~--G----------------~~~c~~vCp~~ 100 (475)
|-.....+.|.||++|+++||.+++.+.....+ | |+.|.++||..
T Consensus 48 G~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 48 GRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred ceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchh
Confidence 335567788999999999999875554433222 2 67899999963
No 9
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.15 E-value=0.0016 Score=48.78 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=8.5
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.+.|++||.|..+||.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 46788999999999999997
No 10
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.10 E-value=0.0012 Score=42.60 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.++|+|||.|..+||.+
T Consensus 3 ~id~~~C~~Cg~C~~~Cp~~ 22 (24)
T PF12837_consen 3 VIDPDKCIGCGDCVRVCPEG 22 (24)
T ss_pred EEChhhCcChhHHHHhcchh
Confidence 46789999999999999963
No 11
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.53 E-value=0.0041 Score=39.40 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCCCCCCCccCCchhhcch
Q 011872 58 TYPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp 76 (475)
.+++.+.|+|||+|...||
T Consensus 3 ~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACP 21 (22)
T ss_pred eEEccccccCchhHHHhhC
Confidence 4678899999999999997
No 12
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.42 E-value=0.0031 Score=40.56 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|.+||.|..+||.+
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFD 21 (24)
T ss_dssp EEETTTSSS-THHHHHSTTS
T ss_pred EEchHHCCCcchhhhhcccc
Confidence 35678999999999999975
No 13
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.76 E-value=0.018 Score=43.32 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=10.4
Q ss_pred CCccCCchhhcchhh
Q 011872 64 HCSRCGLCDTYYIAH 78 (475)
Q Consensus 64 lCtGCGaC~~iCp~~ 78 (475)
.|+|||.|..+||.+
T Consensus 1 kCi~Cg~C~~~CP~~ 15 (55)
T PF13187_consen 1 KCIGCGRCVEACPVG 15 (55)
T ss_dssp C--TTTHHHHHSTTT
T ss_pred CCCCcchHHHHCCcc
Confidence 488888888888864
No 14
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=93.76 E-value=0.015 Score=61.19 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.0
Q ss_pred CCCCCCCccCCchhhcchhhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~ 79 (475)
.++.+.|.+||.|..+||.+.
T Consensus 3 ~id~~kCi~Cg~Cv~~CP~~a 23 (374)
T TIGR02512 3 VRDMSKCIGCGRCVRACTNVQ 23 (374)
T ss_pred EechhhCCcChHhhhhCCHhh
Confidence 467789999999999999754
No 15
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.59 E-value=0.025 Score=60.26 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=38.2
Q ss_pred CCCCCCCccCCchhhcchhhhhhhhhcC----------C---CCcccccccCcc-ccCCCCCCCCCCCCcCCccceeEEE
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL----------G---DGMSRIEGLETV-VHGRGRRKDSLDDTYLGVHEELLYA 124 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~~f~----------~---~G~~~c~~vCp~-~~~r~~~~~~~~e~~~G~~~~~y~a 124 (475)
.++.+.|++||.|..+||.....++.+. . .||..|.++||. .--+... .. ....|.+
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~------~~---~~~~~~~ 408 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVEGCITMGE------VK---FGKPYAN 408 (420)
T ss_pred EECHHHCCCCCcccccCCCcchhheeeccCCCceEEechhhCcccchHHhhCCCCCCEEEec------cC---CCccccc
Confidence 3567899999999999995322222221 1 167889999996 2211111 01 1245889
Q ss_pred EccCC
Q 011872 125 RKTKP 129 (475)
Q Consensus 125 ~s~d~ 129 (475)
|++++
T Consensus 409 ~~~~~ 413 (420)
T PRK08318 409 WTTHP 413 (420)
T ss_pred ccCCC
Confidence 99876
No 16
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.55 E-value=0.019 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.0
Q ss_pred CCCCCCCccCCchhhcchhhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~ 79 (475)
.++.+.|++||.|..+||.+.
T Consensus 17 ~i~~~~Ci~C~~Cv~~CP~~~ 37 (91)
T TIGR02936 17 SIDQEKCIGCGRCYKVCGRDV 37 (91)
T ss_pred EECHhHCCCcchHHHHcChhh
Confidence 567889999999999999653
No 17
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=93.50 E-value=0.017 Score=43.36 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=8.7
Q ss_pred CCccCCchhhcchhh
Q 011872 64 HCSRCGLCDTYYIAH 78 (475)
Q Consensus 64 lCtGCGaC~~iCp~~ 78 (475)
.|+|||.|..+||.+
T Consensus 1 ~C~~C~~C~~~CP~~ 15 (52)
T PF12838_consen 1 KCIGCGACVEACPTG 15 (52)
T ss_dssp C-SS--HHHHH-TTH
T ss_pred CCCCcCchHHhcCcc
Confidence 488999999999864
No 18
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=93.42 E-value=0.027 Score=56.76 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=30.7
Q ss_pred CCCCCCCCCCccCCchhhcchhhhhhh---------hhcC---CCCcccccccCcc
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAHVKDA---------CAFL---GDGMSRIEGLETV 99 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~~~~a---------~~f~---~~G~~~c~~vCp~ 99 (475)
+...++.++|++||.|..+||...... ...+ -.+|+.|..+||.
T Consensus 41 ~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 96 (295)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPS 96 (295)
T ss_pred ceEEEccccCCCCchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcH
Confidence 345778899999999999999753220 0000 1257889999995
No 19
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.23 E-value=0.11 Score=52.69 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=52.0
Q ss_pred CCCCCCCccCCchhhcchhhhhhh--------hhcCCCCcccccccCccccCCCCCCCCCCCCcCCccceeEEEEccC--
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA--------CAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTK-- 128 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a--------~~f~~~G~~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~y~a~s~d-- 128 (475)
.++.+.|..||.|..+|+-+++.. ....-+||+.|.-+||..--.. .+...| ++|.+++..
T Consensus 65 ~i~~e~C~~CG~C~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~------~~~~~G---~i~~~k~~~g~ 135 (284)
T COG1149 65 EIDPEKCIRCGKCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEE------EPVVIG---KIYESKTDYGF 135 (284)
T ss_pred ccChhhccccCcHHHhCCCCeEEEcCCCceecCcccccCcccceeeCCCccccc------ccceee---EEEEEEcCCCc
Confidence 566777999999999998654310 1223458999999999642111 111223 223333322
Q ss_pred -------CccCCCChHHHHHHHHHHHHc
Q 011872 129 -------PVEGAQWTGIVTTIAIEMLKT 149 (475)
Q Consensus 129 -------~r~~ssSGGi~T~La~~lLe~ 149 (475)
..-...||.+++++-+++.|.
T Consensus 136 ~li~g~l~vGe~~s~~lV~~~kk~a~E~ 163 (284)
T COG1149 136 PLISGRLNVGEEESGKLVTALKKHAKEL 163 (284)
T ss_pred eeEEeeccCCccccchHHHHHHHhhhhh
Confidence 133678999999999999886
No 20
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=93.23 E-value=0.027 Score=49.69 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCCCCCCCCccCCchhhcchhhhhhh------hhcCCC---CcccccccCcc
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAHVKDA------CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~~~~a------~~f~~~---G~~~c~~vCp~ 99 (475)
|...+..+.|++||.|..+||.+.... ..++.. +|+.|..+||.
T Consensus 35 g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 87 (120)
T PRK08348 35 GKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPT 87 (120)
T ss_pred ceEEECcccCcCcccHHHHCCccceEccccccceEecCCcCcChhhhHHhCCc
Confidence 345677899999999999999743211 111111 46788899995
No 21
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=93.02 E-value=0.049 Score=32.33 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=13.7
Q ss_pred CCCccCCchhhcchh
Q 011872 63 DHCSRCGLCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~ 77 (475)
+.|.+|+.|..+||.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 579999999999995
No 22
>PRK06273 ferredoxin; Provisional
Probab=92.81 E-value=0.035 Score=52.24 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.2
Q ss_pred CCCCCCCccCCchhhcchhhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~ 79 (475)
.+..+.|.+||.|..+||..+
T Consensus 45 ~id~~~CigCg~C~~aCP~~A 65 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTKA 65 (165)
T ss_pred eECchhCcChhHHHHhcCccc
Confidence 568889999999999999653
No 23
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=92.35 E-value=0.068 Score=49.78 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=14.9
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|++||.|..+||.+
T Consensus 57 ~~~Ci~C~~C~~~CP~~ 73 (164)
T PRK05888 57 EERCIACKLCAAICPAD 73 (164)
T ss_pred CccCCcccChHHHcCcc
Confidence 45999999999999964
No 24
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=92.34 E-value=0.045 Score=46.46 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=36.7
Q ss_pred hhhhhhhhhccccCCCCCCCCCCCCCccCCchhhcchhhhhhhhh------cCCC---CcccccccCcc
Q 011872 40 VKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACA------FLGD---GMSRIEGLETV 99 (475)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~~iCp~~~~~a~~------f~~~---G~~~c~~vCp~ 99 (475)
.-....||- +|| +++.+.|++|+.|.-.||-.++..-. .+.+ ||+.|.++||.
T Consensus 19 ~~kTg~Wrv-~rP------v~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 19 ANKTGSWRV-FRP------VVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDYCKGCGICANVCPV 80 (91)
T ss_pred ccccceeEE-Eee------EEcccccccCceeEEECCchheeeccCCccceeEcccccCceechhhCCh
Confidence 335567874 333 77899999999999999965433211 1111 78889999996
No 25
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=92.32 E-value=0.048 Score=51.14 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=17.6
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.....+.|++||+|..+||..
T Consensus 54 i~~~~~~Ci~Cg~C~~aCP~~ 74 (167)
T CHL00014 54 IHFEFDKCIACEVCVRVCPID 74 (167)
T ss_pred EEeccccCCCcCcHHHhCCCC
Confidence 345678899999999999964
No 26
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=92.06 E-value=0.055 Score=51.50 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCCCCCCCCccCCchhhcchhhhhhh----------hhcCCC---CcccccccCcc
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAHVKDA----------CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~~~~a----------~~f~~~---G~~~c~~vCp~ 99 (475)
|...++.+.|++||+|..+||.+.+.. ..++.. +|+.|..+||.
T Consensus 31 G~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt 87 (181)
T PRK08222 31 GKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPT 87 (181)
T ss_pred CceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCc
Confidence 444567889999999999999753211 011111 46788899985
No 27
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=92.01 E-value=0.066 Score=47.06 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=15.1
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|++||.|..+||..
T Consensus 42 ~~~Ci~C~~C~~~CP~~ 58 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPAD 58 (122)
T ss_pred cCcCcCcchhhhhcCHh
Confidence 38899999999999954
No 28
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=91.91 E-value=0.067 Score=44.36 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=27.7
Q ss_pred CCCCCCCccCCchhhcchhhhhhhh---------hcCCC---CcccccccCccc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDAC---------AFLGD---GMSRIEGLETVV 100 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~---------~f~~~---G~~~c~~vCp~~ 100 (475)
.+..+.|++||+|..+||.+.+..+ .+... +|..|.++||..
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~ 78 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVD 78 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcC
Confidence 4566779999999999997533221 11111 356788889863
No 29
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=91.82 E-value=0.058 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.313 Sum_probs=18.6
Q ss_pred CCCCCCCCCccCCchhhcchhh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
......+.|++||+|..+||.+
T Consensus 56 ~i~~~~~kCi~Cg~C~~aCP~~ 77 (183)
T TIGR00403 56 RIHFEFDKCIACEVCVRVCPIN 77 (183)
T ss_pred eEEeCcccCcCcCChhhhCCCC
Confidence 3456788999999999999975
No 30
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=91.73 E-value=0.047 Score=42.61 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=12.6
Q ss_pred CCCCCCccCCchhhcch-hh
Q 011872 60 PAKDHCSRCGLCDTYYI-AH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp-~~ 78 (475)
+..+.|.|||+|..+|| ++
T Consensus 36 v~~~~C~GCg~C~~~CPv~~ 55 (59)
T PF14697_consen 36 VNPDKCIGCGLCVKVCPVKD 55 (59)
T ss_dssp CE-TT--S-SCCCCCSSSTT
T ss_pred eccccCcCcCcccccCCCcc
Confidence 44689999999999999 44
No 31
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=91.62 E-value=0.082 Score=63.36 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=32.9
Q ss_pred hhCCCCchhhh--hhhhhh----hHhHHHHHHhhcchhhhhhcCchHHHHHHHhhccCchhhhh
Q 011872 414 LVGPKGLEFAR--YSLDYH----TIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQM 471 (475)
Q Consensus 414 ~~gpkglefar--~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~ 471 (475)
+.-|.-.|-++ +.+|++ -++.||..-.+| +++.+.-|+.+.+++++- .-.||+|
T Consensus 1097 ~~~p~~~~~g~~~~~l~~~~~~~~~~~~l~~~~r~--~~l~~~~p~~~~~~~~~~--~~~~~~~ 1156 (1165)
T TIGR02176 1097 RYNPRLAEQGKNPFQLDSKEPDSSVAEFLNGEVRF--ASLKKSFPDDAERLFNKA--AHEAKRR 1156 (1165)
T ss_pred EecCcccccCCCCeeecCCCCCcCHHHHHHhchHH--HHhcccChHHHHHHHHHH--HHHHHHH
Confidence 34444334443 555554 567788877777 367777788888887763 3344444
No 32
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=91.32 E-value=0.1 Score=44.86 Aligned_cols=22 Identities=18% Similarity=0.531 Sum_probs=18.5
Q ss_pred CCCCCCCCCccCCchhhcchhh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
...++.+.|.|||.|..+||..
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ 31 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAG 31 (103)
T ss_pred CeEECcccccCCcchhhhcChh
Confidence 3456788999999999999964
No 33
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=91.30 E-value=0.068 Score=30.81 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=12.1
Q ss_pred CccCCchhhcchh
Q 011872 65 CSRCGLCDTYYIA 77 (475)
Q Consensus 65 CtGCGaC~~iCp~ 77 (475)
|++||.|..+||.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 8899999999996
No 34
>CHL00065 psaC photosystem I subunit VII
Probab=91.14 E-value=0.11 Score=42.52 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
....+.|++||.|..+||.+
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~ 24 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTD 24 (81)
T ss_pred cCccccCCChhHHHHHCCcc
Confidence 45677899999999999964
No 35
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=91.11 E-value=0.069 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=17.7
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
++-+.|-|||.|+++||.+
T Consensus 63 idYdyCKGCGICa~vCP~k 81 (91)
T COG1144 63 IDYDYCKGCGICANVCPVK 81 (91)
T ss_pred eEcccccCceechhhCChh
Confidence 7899999999999999984
No 36
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=91.05 E-value=0.1 Score=53.61 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=28.7
Q ss_pred CCCCCCCccCCchhhcchhhhhhhhhcC-------C---CCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL-------G---DGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~~f~-------~---~G~~~c~~vCp~ 99 (475)
..+.+.|.+||.|..+||.+...++.+. . .+|..|.++||.
T Consensus 165 ~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~ 215 (314)
T TIGR02912 165 QYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPT 215 (314)
T ss_pred ceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCH
Confidence 3467889999999999996432233221 1 157789999996
No 37
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=90.93 E-value=0.077 Score=50.21 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=29.4
Q ss_pred CCCCCCCCCCccCCchhhcchhhhhhhh----------hcCCC---CcccccccCcc
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAHVKDAC----------AFLGD---GMSRIEGLETV 99 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~~~~a~----------~f~~~---G~~~c~~vCp~ 99 (475)
|...++.+.|++||+|..+||.+..... .++.. +|+.|..+||.
T Consensus 31 g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~ 87 (180)
T PRK12387 31 GKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPT 87 (180)
T ss_pred CceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCc
Confidence 3456678999999999999997532110 11111 46778888885
No 38
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=90.78 E-value=0.1 Score=56.72 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
|++ +.|+|||+|..+||..
T Consensus 221 yVd-d~CtgCg~C~~vCPve 239 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVE 239 (622)
T ss_pred ccc-ccccccccccccCCcc
Confidence 777 9999999999999963
No 39
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=90.70 E-value=0.11 Score=53.32 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=28.5
Q ss_pred CCCCCCCccCCchhhcchhhhhhh-----------------hhcC---CCCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA-----------------CAFL---GDGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a-----------------~~f~---~~G~~~c~~vCp~ 99 (475)
.++.+.|.+||.|..+||...... ..++ ..||..|.++||.
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~ 303 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPT 303 (312)
T ss_pred EECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCH
Confidence 457789999999999999754321 0011 2267789999995
No 40
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=90.66 E-value=0.12 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCCCCccCCchhhcchhhh
Q 011872 51 KPIPPGGTYPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 51 ~~~~~~~~~~~~~lCtGCGaC~~iCp~~~ 79 (475)
-|+.|+.. ..+.|.+|+.|...||..+
T Consensus 149 ~~l~~~~p--~~~~C~~C~~C~~aCPt~A 175 (282)
T TIGR00276 149 IPLKADEP--IEEYCGRCTKCIDACPTQA 175 (282)
T ss_pred hhcccCCC--CCCCCccHHHHHHhcCccc
Confidence 45666643 5689999999999999753
No 41
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=90.58 E-value=0.059 Score=48.82 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=29.6
Q ss_pred CCCCCCCCccCCchhhcchhhhhhh-----hhcCC---CCcccccccCccc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDA-----CAFLG---DGMSRIEGLETVV 100 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a-----~~f~~---~G~~~c~~vCp~~ 100 (475)
...+.+.|.+||.|..+||...+.. ..++. .+|+.|.++||..
T Consensus 54 p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 54 PVHNNEICINCFNCWVYCPDAAILSRDKKLKGVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EEEehhHCcChhhHHHhCCHhheEecCCceEEeCcCcCcChhHHHHHCCcC
Confidence 3567799999999999999653210 01111 1577899999963
No 42
>PLN00071 photosystem I subunit VII; Provisional
Probab=90.44 E-value=0.1 Score=42.63 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.3
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+...+.|.+||+|..+||.+
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~ 24 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTD 24 (81)
T ss_pred CeEcCCcCcChhHHHHHCCcc
Confidence 355678999999999999964
No 43
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=89.56 E-value=0.12 Score=55.68 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCCCccCCchhhcchhhhhhhhh--cCCCCcccccccCccc
Q 011872 62 KDHCSRCGLCDTYYIAHVKDACA--FLGDGMSRIEGLETVV 100 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~a~~--f~~~G~~~c~~vCp~~ 100 (475)
.+.|++||.|..+||.+....-. ....+|..|.+.||..
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~~~~~~~Ci~Cg~CidaCp~a 270 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIRDGLQLECINCGLCIDACDDV 270 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeCCCCchhChhhhHHHHhCCCh
Confidence 57899999999999975211000 0112577899999963
No 44
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=89.39 E-value=0.14 Score=41.16 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
......|+|||.|+.+||.+
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred hcCCccCCCcChHhhhcCCC
Confidence 44677899999999999974
No 45
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=89.19 E-value=0.15 Score=38.48 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=10.7
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
+.|++||+|.++||..
T Consensus 3 ~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 3 SKCIRCGACTSVCPVY 18 (57)
T ss_dssp HC--S-SHHHHCSHHH
T ss_pred HHccCccChHHHChhh
Confidence 4699999999999953
No 46
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=89.12 E-value=0.13 Score=41.58 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|.+||.|..+||..
T Consensus 21 ~i~~~~C~~C~~C~~~Cp~~ 40 (78)
T TIGR02179 21 VVDKEKCIKCKNCWLYCPEG 40 (78)
T ss_pred EEcCCcCcChhHHHhhcCcc
Confidence 56678999999999999964
No 47
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=89.02 E-value=0.14 Score=52.43 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=36.3
Q ss_pred hhhhhhhhhccccCCCCCCCCCCCCCccCCchhhcchhhhhhh-----hhcC-CCCcccccccCcc
Q 011872 40 VKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDA-----CAFL-GDGMSRIEGLETV 99 (475)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~~iCp~~~~~a-----~~f~-~~G~~~c~~vCp~ 99 (475)
.+...|-|..++| ++..+.|++||.|..+||.+.+.- +... .-||.+|...||-
T Consensus 176 ~~~k~~qH~~~~p------~v~e~kc~~c~~cv~~cp~~Ai~~~~~~~I~~~~ci~c~~c~~ac~~ 235 (354)
T COG2768 176 LAGKVDQHLDEKP------VVVEEKCYDCGLCVKICPVGAITLTKVVKIDYEKCIGCGQCMEACPY 235 (354)
T ss_pred cCcccccccccCc------eeeeecccccchhhhhCCCcceecccceeechhhccchhhhhhhccC
Confidence 4456666776666 667789999999999999763221 1110 1267788888883
No 48
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=88.92 E-value=0.72 Score=51.05 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=27.0
Q ss_pred CCCccCCchhhcchhhh--hhhhhcCCC--------------CcccccccCcc
Q 011872 63 DHCSRCGLCDTYYIAHV--KDACAFLGD--------------GMSRIEGLETV 99 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~~--~~a~~f~~~--------------G~~~c~~vCp~ 99 (475)
..|++||.|.-.||... .++|.+-.. ||.+|+++||.
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk 452 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKLEDLHDVCIGCGRCEQVCPK 452 (772)
T ss_pred HhcccccchhccCCcccchHHHHHHhhcCChHHHHHHHHHhhhhhhhhhhCcc
Confidence 67999999999999532 224443322 58899999994
No 49
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=88.88 E-value=0.12 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.4
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
|..++...+|+|||.|+..||=.
T Consensus 43 gkpvIsE~lCiGCGICvkkCPF~ 65 (591)
T COG1245 43 GKPVISEELCIGCGICVKKCPFD 65 (591)
T ss_pred CCceeEhhhhccchhhhccCCcc
Confidence 45699999999999999999954
No 50
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=88.83 E-value=0.11 Score=39.09 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=13.6
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
..+.|++||.|..+||.+
T Consensus 36 ~~~~C~~Cg~C~~~CP~~ 53 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTG 53 (55)
T ss_dssp TGGG--TTCHHHHHSTTT
T ss_pred CCCccccHhHHHHHcchh
Confidence 456899999999999974
No 51
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=88.81 E-value=0.12 Score=44.94 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCCCCCCccCCchhhcchhhhhhh-----hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA-----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a-----~~f~~~---G~~~c~~vCp~ 99 (475)
.++.+.|.+||.|..+||.+.... ..++.+ +|..|..+||.
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPT 95 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEecCCCcEEECchhCCCcCchhhhcCc
Confidence 356788999999999999642110 011111 46678888884
No 52
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=88.12 E-value=0.21 Score=43.01 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCccCCchhhcchhh
Q 011872 54 PPGGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 54 ~~~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..|...++.+.|.|||+|..+||.+
T Consensus 52 e~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 52 DDGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCCEEEcCCCCCcchhhhhhcCCC
Confidence 3466777888888888888888764
No 53
>COG1146 Ferredoxin [Energy production and conversion]
Probab=88.06 E-value=0.15 Score=40.39 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=27.5
Q ss_pred CCCCCCccCCchhhcchhhhhhhhh--------cCCC---CcccccccCccc
Q 011872 60 PAKDHCSRCGLCDTYYIAHVKDACA--------FLGD---GMSRIEGLETVV 100 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~~~a~~--------f~~~---G~~~c~~vCp~~ 100 (475)
++.+.|.|||.|..+||........ .+.+ ||..|...||..
T Consensus 5 Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 5 IDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVG 56 (68)
T ss_pred ECchhcCCCChheeccChhhEEeccccCcceeEeccccCccchhhhhhCCcc
Confidence 5566799999999999975433221 0111 467888999964
No 54
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=88.00 E-value=0.19 Score=50.60 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=27.4
Q ss_pred CCCCCCccCCchhhcchhhhhhh--h-----h--cCCC---CcccccccCcc
Q 011872 60 PAKDHCSRCGLCDTYYIAHVKDA--C-----A--FLGD---GMSRIEGLETV 99 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~~~a--~-----~--f~~~---G~~~c~~vCp~ 99 (475)
.+.+.|++||.|..+||.+.... . . .+.+ +|.+|.++||.
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 256 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSE 256 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCc
Confidence 56789999999999999642111 0 0 1111 47789999995
No 55
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=87.90 E-value=0.15 Score=41.19 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
+++++.|.|||+|..+||.
T Consensus 4 ~vDrd~Cigcg~C~~~aPd 22 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPD 22 (68)
T ss_pred EechhhccccchhhhcCCc
Confidence 5678999999999999994
No 56
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=87.43 E-value=0.19 Score=39.62 Aligned_cols=19 Identities=32% Similarity=0.781 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++.+.|.|||.|...||.
T Consensus 2 ~vD~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPE 20 (65)
T ss_pred EEecccCcCccHHHhhCCc
Confidence 4678999999999999995
No 57
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=87.22 E-value=0.25 Score=52.89 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
--+|..||+|...||..
T Consensus 307 ~L~CIRCGaC~n~CPvY 323 (459)
T COG1139 307 ALRCIRCGACLNHCPVY 323 (459)
T ss_pred HHHhhcchHhhhcChhh
Confidence 34699999999999954
No 58
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=87.18 E-value=0.21 Score=49.99 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=25.9
Q ss_pred CCCCCccCCchhhcchhhhhhhhh--------cCCC---CcccccccCcc
Q 011872 61 AKDHCSRCGLCDTYYIAHVKDACA--------FLGD---GMSRIEGLETV 99 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~~~~a~~--------f~~~---G~~~c~~vCp~ 99 (475)
+++.|++||.|..+||........ .+.+ +|+.|.++||.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 248 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVLSGDCTLCGRCIDVCHE 248 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEeccccccchhHHHHhCCc
Confidence 378999999999999964211110 1111 46788889985
No 59
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=86.94 E-value=0.23 Score=43.09 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=27.0
Q ss_pred CCCCCCCccCCchhhcchhhhhhh-----hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA-----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a-----~~f~~~---G~~~c~~vCp~ 99 (475)
.++.+.|.+||.|..+||...... ..++.+ +|..|.+.||.
T Consensus 47 ~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09623 47 VVDESKCVKCYICWKFCPEPAIYIKEDGYVAIDYDYCKGCGICANECPT 95 (105)
T ss_pred EECcccCccccchhhhCCHhheEecCCCcEEeCchhCcCcchhhhhcCc
Confidence 567789999999999999642210 011111 46677888885
No 60
>PRK02651 photosystem I subunit VII; Provisional
Probab=86.92 E-value=0.32 Score=39.57 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
..+.|.+||.|..+||..
T Consensus 7 ~~~~Ci~C~~C~~~CP~~ 24 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLD 24 (81)
T ss_pred ccccCCCcchHHHHCCcc
Confidence 458899999999999954
No 61
>PRK06991 ferredoxin; Provisional
Probab=86.88 E-value=0.25 Score=50.08 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=28.9
Q ss_pred CCCCCCCccCCchhhcchhhhhhh----h-hc---CCCCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA----C-AF---LGDGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a----~-~f---~~~G~~~c~~vCp~ 99 (475)
.++.+.|++||.|..+||...+.. + .+ .-.||+.|..+||.
T Consensus 81 ~id~~~CigCg~Cv~aCP~~AI~~~~~~~~~v~~~~CigCg~Cv~vCP~ 129 (270)
T PRK06991 81 VIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVLADLCTGCDLCVPPCPV 129 (270)
T ss_pred EEccccCCCCcHHHHhCCHhheecccccceeeCHhhCCCchHHHhhCCc
Confidence 567789999999999999643210 0 01 12267889999996
No 62
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=86.71 E-value=0.2 Score=57.28 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=33.0
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCccCCchhhcchhhhhh--hhh---------c-----CCCCcccccccCcc
Q 011872 42 LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKD--ACA---------F-----LGDGMSRIEGLETV 99 (475)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~~iCp~~~~~--a~~---------f-----~~~G~~~c~~vCp~ 99 (475)
.+.+|+ +..|-. ....-..+.|++||.|..+||..... .+. + ...+|..|..+||.
T Consensus 380 ~r~~~r-~~~P~~-eeLl~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~ 451 (784)
T TIGR00314 380 KRGDER-KFLPDD-EELMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPK 451 (784)
T ss_pred ccCCce-eeCChH-HHHhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCC
Confidence 356676 222221 12334568899999999999964110 110 0 11257789999995
No 63
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=86.62 E-value=0.28 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=13.3
Q ss_pred CCccCCchhhcchhh
Q 011872 64 HCSRCGLCDTYYIAH 78 (475)
Q Consensus 64 lCtGCGaC~~iCp~~ 78 (475)
.|..||.|+.+||..
T Consensus 1 ~C~~C~~C~~~CP~~ 15 (67)
T PF13484_consen 1 FCITCGKCAEACPTG 15 (67)
T ss_pred CCcchhHHHHhCcHh
Confidence 489999999999974
No 64
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=86.58 E-value=0.27 Score=47.26 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCCCCCCCccCCchhhcchhhhhhhh-----hcC---CCCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDAC-----AFL---GDGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a~-----~f~---~~G~~~c~~vCp~ 99 (475)
.+++.+.|.+||.|..+||....... ..+ -.+|+.|.++||.
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~vCP~ 158 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPVDAIVGATKAMHTVISDLCTGCDLCVAPCPT 158 (191)
T ss_pred eEEeCCcCCCCChhhhhCCHhhhecccCCceeecCCcCCchHHHHHHcCc
Confidence 46678899999999999995422110 001 1157889999996
No 65
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=86.27 E-value=0.21 Score=45.36 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.8
Q ss_pred CCCCCCCCccCC-----chhhcchhhhhhh-----hh--cCCC---CcccccccCcc
Q 011872 58 TYPAKDHCSRCG-----LCDTYYIAHVKDA-----CA--FLGD---GMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCG-----aC~~iCp~~~~~a-----~~--f~~~---G~~~c~~vCp~ 99 (475)
.++..+.|+||| .|..+||...... .. .+.+ ||..|.++||.
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 59 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQ 59 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecCchhCccHHHHHHhCCc
Confidence 367788999999 9999999643210 00 1111 57788999995
No 66
>PRK10194 ferredoxin-type protein; Provisional
Probab=86.08 E-value=0.28 Score=45.60 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCCCccCCchhhcchhhhhhh-------hhcCCC---CcccccccCcc
Q 011872 62 KDHCSRCGLCDTYYIAHVKDA-------CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~a-------~~f~~~---G~~~c~~vCp~ 99 (475)
...|++||.|..+||.+.+.. ..++.+ +|..|.++||.
T Consensus 33 ~~~C~~Cg~C~~aCp~~~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~ 80 (163)
T PRK10194 33 LTHCTRCDACINACENNILQRGAGGYPSVNFKNNECSFCYACAQACPE 80 (163)
T ss_pred hhhCcChhHHHHHcChhhcccCCCCceeeeecCCCCCCchhhHhhCcc
Confidence 458999999999999753321 112222 35678888886
No 67
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=86.07 E-value=0.4 Score=41.13 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCCCCCCccCCchhhcchhhhhhh-------hhcCCC---CcccccccCccc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA-------CAFLGD---GMSRIEGLETVV 100 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a-------~~f~~~---G~~~c~~vCp~~ 100 (475)
....+.|.+||.|..+||.+.... ..++.+ +|+.|..+||..
T Consensus 30 ~~~~~~C~~C~~C~~~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~ 81 (101)
T TIGR00402 30 SLFSAVCTRCGECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTN 81 (101)
T ss_pred ccCcCcCcChhHHHHHcCcccceeccCCceeeEecCccCcCccChhhHCCcc
Confidence 456678999999999999643221 111111 467788999863
No 68
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=85.31 E-value=0.27 Score=53.51 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=32.4
Q ss_pred cccCCCCCCCCCCCCCccCCchhhcchhhhhhhh-hcC----CCCcccccccCcc
Q 011872 50 SKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDAC-AFL----GDGMSRIEGLETV 99 (475)
Q Consensus 50 ~~~~~~~~~~~~~~lCtGCGaC~~iCp~~~~~a~-~f~----~~G~~~c~~vCp~ 99 (475)
...+.|=-..++.++|+|||.|.. ||-..+.-- ... --||+.|...||.
T Consensus 548 ~~~~~~~~a~vde~~C~gC~~C~~-Cpf~ais~~ka~v~~~~C~gCG~C~~aCp~ 601 (622)
T COG1148 548 EVELEPFVATVDEDKCTGCGICAE-CPFGAISVDKAEVNPLRCKGCGICSAACPS 601 (622)
T ss_pred ceeecccccccchhhhcCCcceee-CCCCceeccccccChhhhCcccchhhhCCc
Confidence 334444446778999999999999 995321100 111 1278899999995
No 69
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=84.85 E-value=0.32 Score=37.69 Aligned_cols=17 Identities=35% Similarity=0.808 Sum_probs=10.9
Q ss_pred CCCCCccCCchhhcchh
Q 011872 61 AKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~ 77 (475)
+++.|.+||+|...+|.
T Consensus 2 D~~~Ci~Cg~C~~~aP~ 18 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPD 18 (58)
T ss_dssp -TTT--S-SHHHHH-TT
T ss_pred ChhhCcCCChHHHhCcH
Confidence 56899999999999995
No 70
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=84.84 E-value=0.43 Score=53.20 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=28.3
Q ss_pred CCCCCCCCccCCchh--hcchhhhhhh---hhcC----CCCcccccccCccc
Q 011872 58 TYPAKDHCSRCGLCD--TYYIAHVKDA---CAFL----GDGMSRIEGLETVV 100 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~--~iCp~~~~~a---~~f~----~~G~~~c~~vCp~~ 100 (475)
-.++.+.|+|||.|. +-||.-.... -..+ ..||+.|.++||..
T Consensus 572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~~~k~~id~~~C~GCg~C~~iCP~~ 623 (640)
T COG4231 572 YFVDEEKCTGCGDCIVLSGCPSIEPDPTFKKARIDPSSCNGCGSCVEVCPSF 623 (640)
T ss_pred ceechhhcCCcHHHHhhcCCceEeecCCCCceeecccccccchhhhhcCchh
Confidence 466789999999996 5676321111 0111 23888999999963
No 71
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=84.52 E-value=0.42 Score=48.52 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=17.8
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..+...+|.|||+|.-+||.+
T Consensus 94 ~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 94 PVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred eecCcccccCcccceeeCCCc
Confidence 345689999999999999964
No 72
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=83.94 E-value=0.41 Score=39.06 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.3
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
+...+.|++||.|..+||.+
T Consensus 4 ~~~~~~Ci~C~~Cv~~CP~~ 23 (80)
T TIGR03048 4 VKIYDTCIGCTQCVRACPTD 23 (80)
T ss_pred eecCCcCcCcchHHHHCCcc
Confidence 44567899999999999954
No 73
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=83.93 E-value=0.33 Score=47.91 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCCCCccCCchhhcchhhhhhh----hhcC---CCCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFL---GDGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a----~~f~---~~G~~~c~~vCp~ 99 (475)
.++.+.|.+||.|..+||.+.... ..++ ..+|..|...||.
T Consensus 144 ~id~~~C~~C~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~~~CP~ 191 (234)
T TIGR02700 144 MIDRKRCKGCGICVDACPRSAIDMVDGKAFIRLLKCVGCGKCKEACPY 191 (234)
T ss_pred EEChhHCcCcchHHHhCCcccEEecCCceEEchhhCCccchHHhhCCC
Confidence 456788999999999999642210 0011 1256778889985
No 74
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=83.74 E-value=0.3 Score=50.30 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCCCCCCCccCCchhhcchhhhhhhhh----cC---CCCcccccccCc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDACA----FL---GDGMSRIEGLET 98 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a~~----f~---~~G~~~c~~vCp 98 (475)
+.++.++|.|||.|+.+||.+.+.-.. .+ --||..|.+.||
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCC
Confidence 457889999999999999975332111 11 116788999999
No 75
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=83.41 E-value=0.52 Score=49.20 Aligned_cols=26 Identities=35% Similarity=0.834 Sum_probs=20.9
Q ss_pred ccCCCCCCCCCC-CCCccCCchhhcchhh
Q 011872 51 KPIPPGGTYPAK-DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 51 ~~~~~~~~~~~~-~lCtGCGaC~~iCp~~ 78 (475)
.|+.|+. |.. +.|-.|..|..+||+.
T Consensus 174 ~~l~pd~--p~~~~~Cg~C~~CldaCPt~ 200 (337)
T COG1600 174 APLPPDR--PEEEDHCGSCTRCLDACPTG 200 (337)
T ss_pred CCCCCCC--CCCCccChhhHHHHhhCCcc
Confidence 4677775 334 9999999999999975
No 76
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=83.16 E-value=0.43 Score=35.47 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=12.1
Q ss_pred CCCCCCCccCCchhhcch
Q 011872 59 YPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp 76 (475)
.+....|++||.|..+||
T Consensus 35 ~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 35 EIDPERCIGCGACVEVCP 52 (52)
T ss_dssp EE-TTT--TTSHHHHH-T
T ss_pred EeCcccccccChhhhhCc
Confidence 446788999999999998
No 77
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=83.02 E-value=0.35 Score=45.20 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.2
Q ss_pred CCCCCCCCccCCchhhcchhhhhhhhhcCC-----------CCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a~~f~~-----------~G~~~c~~vCp~ 99 (475)
..++.+.|++||.|..+||.+. +.+.. .+|+.|.++||.
T Consensus 108 ~~id~~~Ci~Cg~C~~aCp~~a---i~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 157 (165)
T TIGR01944 108 ALIDEDNCIGCTKCIQACPVDA---IVGAAKAMHTVIADECTGCDLCVEPCPT 157 (165)
T ss_pred EEEECCcCCChhHHHHhCCccc---eEecCCCceEeecccccChhHHHHhcCc
Confidence 4667889999999999999542 12211 146788999995
No 78
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=82.91 E-value=0.49 Score=39.24 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|.+||.|..+||..
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~ 85 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKK 85 (91)
T ss_pred ecCCccCcChhhhhhhCCHh
Confidence 35678999999999999974
No 79
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=82.75 E-value=0.3 Score=46.76 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=29.8
Q ss_pred CCCCCCCCccCCchhhcchhh------------hhhhhhcCCCCcccccccCcccc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH------------VKDACAFLGDGMSRIEGLETVVH 101 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~------------~~~a~~f~~~G~~~c~~vCp~~~ 101 (475)
.+++.+.|.||-.|.+.||.. ..+-|. ||..|...||...
T Consensus 110 a~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCT----GC~lCva~CPtdc 161 (198)
T COG2878 110 ALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCT----GCDLCVAPCPTDC 161 (198)
T ss_pred eEecchhccccHHHHHhCChhhhhccchhHHHHHHHHhc----CCCcccCCCCCCc
Confidence 367788899999999999843 122354 8889999999643
No 80
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=82.42 E-value=0.6 Score=53.25 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=26.4
Q ss_pred CCCCCccCCchhhcchhhhhh-------------hh-hc---CCCCcccccccCcc
Q 011872 61 AKDHCSRCGLCDTYYIAHVKD-------------AC-AF---LGDGMSRIEGLETV 99 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~~~~-------------a~-~f---~~~G~~~c~~vCp~ 99 (475)
....|.+||.|..+||.+..- .+ .+ ...+|+.|..+||.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs 423 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPS 423 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCC
Confidence 567899999999999965321 00 11 12247788999995
No 81
>PRK13409 putative ATPase RIL; Provisional
Probab=81.80 E-value=0.51 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=19.8
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
+..++..++|.|||.|+..||=.
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp~~ 64 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCPFD 64 (590)
T ss_pred CCceeeHhhccccccccccCCcc
Confidence 34688899999999999999954
No 82
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=81.47 E-value=27 Score=35.12 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcC--CCCcc-cCchHHHHHHHHcCCC
Q 011872 139 VTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKG--VKPTL-SPNLNTLALVEAAGVK 215 (475)
Q Consensus 139 ~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~G--SKY~~-S~~l~~l~ev~~~g~k 215 (475)
.+.+....|++|.+|++|.+. + -.-.+++++|+=+...-| |--+. +|..+.++.+.+.| .
T Consensus 77 ~SEi~~t~l~~g~iDaaVivc-----------D-----gaGTVI~~nP~lVQGigGR~SGLv~TtPIpevi~~Ie~~g-G 139 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIVC-----------D-----GAGTVITTNPALVQGLGGRISGLIETSPIPEVIEKIEDEG-G 139 (259)
T ss_pred HHHHHHHHHhcCCcceEEEEe-----------c-----CcCeEEeCCHHHHhhccceeeeeeeccccHHHHHHHHhcC-C
Confidence 478999999999999999875 3 245678888886655433 32222 56666777776553 3
Q ss_pred EEEE--EecchHHHHHHHHHHhcCCCce-EEEc
Q 011872 216 RLLF--CGVGCQVQALRSVEHHLNLEKL-YVLG 245 (475)
Q Consensus 216 kVlf--vGtPCQI~ALr~l~~~l~~e~L-y~Ig 245 (475)
-|+= ...==|+.|+++..+ +|++++ .+|.
T Consensus 140 iVLd~~tA~IDq~~Gv~~Aie-~Gyk~IaVTv~ 171 (259)
T TIGR03275 140 IVLDPDTATIDQIKGVEKAIE-LGYKKIAVTVA 171 (259)
T ss_pred EEeCCccccccHHHHHHHHHH-cCCceEEEEec
Confidence 3332 344468888887654 577765 5554
No 83
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=81.34 E-value=0.43 Score=47.11 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=29.4
Q ss_pred CCCCCCCCccCCchhhcchhhhhhh----hhcCC---CCcccccccCcccc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDA----CAFLG---DGMSRIEGLETVVH 101 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a----~~f~~---~G~~~c~~vCp~~~ 101 (475)
..++.+.|++||.|..+||...... ...+. .+|..|.+.||...
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~~~~~i~~~~C~~C~~C~~~CP~~~ 219 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMEDGRPNVNRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeCCcEEEChhhccCHHHHHHHcCCCC
Confidence 3667889999999999999542110 01111 15678899999643
No 84
>PRK09898 hypothetical protein; Provisional
Probab=81.17 E-value=0.51 Score=45.67 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCCCCCCccCC--chhhcchhhhhhh------hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSRCG--LCDTYYIAHVKDA------CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCG--aC~~iCp~~~~~a------~~f~~~---G~~~c~~vCp~ 99 (475)
......|.+|+ .|..+||...... ..++.+ ||..|.+.||.
T Consensus 117 ~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~vd~~~CigC~~C~~aCP~ 168 (208)
T PRK09898 117 NYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPW 168 (208)
T ss_pred EEeCccCCCccCcchhhhCCcceEEeeccCCeEEeccccCCCcCcccccCCC
Confidence 34566788887 7888888542110 111121 45667777774
No 85
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=80.36 E-value=0.47 Score=35.41 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=13.1
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++.+.|++||.|..+||.
T Consensus 32 ~~~~~~C~~C~~C~~~CP~ 50 (52)
T PF12838_consen 32 VIDPDKCTGCGACVEVCPT 50 (52)
T ss_dssp EETGGG----SHHHHHTTT
T ss_pred EEechhCcCcChhhhhCcC
Confidence 5678889999999999996
No 86
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=80.00 E-value=0.93 Score=48.81 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=16.0
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
.....|.+||.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 3567899999999999964
No 87
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=79.90 E-value=0.83 Score=54.14 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=28.9
Q ss_pred CCCCCCccC----Cchhhcchhhhhhhhh---cC-----------CCCcccccccCccc
Q 011872 60 PAKDHCSRC----GLCDTYYIAHVKDACA---FL-----------GDGMSRIEGLETVV 100 (475)
Q Consensus 60 ~~~~lCtGC----GaC~~iCp~~~~~a~~---f~-----------~~G~~~c~~vCp~~ 100 (475)
...+.|.+| |.|..+||.+...++. |. ..||+.|..+||.-
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~~~C~~CG~C~~~CP~~ 941 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPWN 941 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccccccCCcccCCceEEcCccCccccchhhhCCCC
Confidence 456789999 9999999976523232 11 11578899999963
No 88
>PRK13795 hypothetical protein; Provisional
Probab=79.89 E-value=0.52 Score=53.20 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=26.9
Q ss_pred CCCCCCCccCCchhhcchhhhhhh------hhcC---CCCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA------CAFL---GDGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a------~~f~---~~G~~~c~~vCp~ 99 (475)
+...+.|++||.|..+||...... ..++ ..+|..|..+||.
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~id~~~C~~Cg~C~~aCP~ 626 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGAIRIEEGKRKISVDEEKCIHCGKCTEVCPV 626 (636)
T ss_pred EEccccCCCHhHHHHhCCcccEEeecCCceEEechhhcCChhHHHhhcCC
Confidence 345678999999999999642111 1111 1156788899985
No 89
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=79.80 E-value=0.63 Score=49.73 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=28.3
Q ss_pred CCCCCCCCccCCchhhcchhhhhh----hhhcC---CCCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKD----ACAFL---GDGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~----a~~f~---~~G~~~c~~vCp~ 99 (475)
..++.+.|.+||.|..+||..... ...++ ..+|..|...||.
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~i~~~~C~~C~~C~~~CP~ 53 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDRNYVVKADVCNGCMACVSPCPT 53 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCCceEeCcccCcCHHHHHhhcCc
Confidence 356788999999999999964211 00111 1257788999995
No 90
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=79.51 E-value=0.6 Score=45.99 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.3
Q ss_pred CCCCCCCCCccCCchhhcchh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~ 77 (475)
....+.+.|++||.|..+||.
T Consensus 140 ~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 140 RFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred cEEeehhhCcCccHHHHHHHH
Confidence 345567899999999999983
No 91
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=79.23 E-value=0.44 Score=49.33 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=8.8
Q ss_pred CCCCCCccCCchhhcch
Q 011872 60 PAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp 76 (475)
++.+.|.|||.|..+||
T Consensus 159 ID~ekCiGCg~Cv~ACP 175 (321)
T TIGR03478 159 VDQERCKGYRYCVEACP 175 (321)
T ss_pred ECHHHCcchHHHHHhCC
Confidence 44445555555555555
No 92
>PRK07118 ferredoxin; Validated
Probab=79.08 E-value=0.57 Score=47.68 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=10.9
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
...|.|||.|...||.
T Consensus 138 ~~~CigCg~C~~aCp~ 153 (280)
T PRK07118 138 SYGCLGLGSCVAACPF 153 (280)
T ss_pred CCCCcChhHHHHhCCc
Confidence 3457777777777774
No 93
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=78.84 E-value=0.68 Score=43.69 Aligned_cols=17 Identities=29% Similarity=0.827 Sum_probs=15.2
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|..|-+|.++||..
T Consensus 110 eerCIACklCeavCPaq 126 (212)
T KOG3256|consen 110 EERCIACKLCEAVCPAQ 126 (212)
T ss_pred chhhhhHHHHHHhCCcc
Confidence 57899999999999974
No 94
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.77 E-value=0.74 Score=52.64 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCCCCccCCchhhcchhhhh--hhhhc--------------CCCCcccccccCcc
Q 011872 61 AKDHCSRCGLCDTYYIAHVK--DACAF--------------LGDGMSRIEGLETV 99 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~~~--~a~~f--------------~~~G~~~c~~vCp~ 99 (475)
..+.|++||.|...||.... ..+.. ...+|..|..+||.
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~ 417 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPK 417 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCC
Confidence 46779999999999996421 01111 01146789999995
No 95
>PRK13984 putative oxidoreductase; Provisional
Probab=78.04 E-value=0.99 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=18.5
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
|-.+.+.+.|.+||.|..+||..
T Consensus 38 ~~~~~d~~~Ci~C~~C~~~Cp~~ 60 (604)
T PRK13984 38 GFHINDWEKCIGCGTCSKICPTD 60 (604)
T ss_pred CccccChhhCcCccchhhhCCcc
Confidence 33456788999999999999953
No 96
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=77.82 E-value=0.78 Score=44.80 Aligned_cols=20 Identities=20% Similarity=0.647 Sum_probs=16.2
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.+.|+|||.|..+||.
T Consensus 170 p~Vd~~~C~gCG~C~~~CP~ 189 (213)
T TIGR00397 170 PTVDSAKCTGCGTCEKHCVL 189 (213)
T ss_pred eEEecccCCCcchhhHhCCC
Confidence 35677889999999989985
No 97
>COG1146 Ferredoxin [Energy production and conversion]
Probab=77.23 E-value=0.74 Score=36.46 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
....+.|.+||+|...||.+
T Consensus 37 ~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 37 VARPEECIDCGLCELACPVG 56 (68)
T ss_pred EeccccCccchhhhhhCCcc
Confidence 45567799999999999974
No 98
>PLN00071 photosystem I subunit VII; Provisional
Probab=76.86 E-value=0.94 Score=36.91 Aligned_cols=21 Identities=19% Similarity=0.593 Sum_probs=17.0
Q ss_pred CCCCCCccCCchhhcchhhhh
Q 011872 60 PAKDHCSRCGLCDTYYIAHVK 80 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~~ 80 (475)
++.+.|.+||.|..+||...+
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~Ai 63 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTDFL 63 (81)
T ss_pred CCCCcCcChhhHHhhcCCccc
Confidence 355789999999999997533
No 99
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=76.74 E-value=1 Score=48.62 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=16.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
+-.-..|..||+|.++||..
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVY 308 (432)
T ss_pred hhhHhhCCCCCCccccCcch
Confidence 44567899999999999953
No 100
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=76.65 E-value=0.93 Score=34.70 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=11.2
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
.....|++||+|...||.+
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTTTT--S--HHHHH-TT-
T ss_pred cccccCcCcCcCcccccCC
Confidence 4678899999999999974
No 101
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=76.06 E-value=48 Score=33.43 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcC--CCCc-ccCchHHHHHHHHcCCC
Q 011872 139 VTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKG--VKPT-LSPNLNTLALVEAAGVK 215 (475)
Q Consensus 139 ~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~G--SKY~-~S~~l~~l~ev~~~g~k 215 (475)
+|.+....|++|.+|++|.+. + -.-.+++++|+=+...-| |--+ -+|.-+.++.+.+.| .
T Consensus 77 aSEil~t~l~~g~iDaaV~vc-----------d-----GAGTVI~~~P~lVQGiGGrmSGLv~T~PI~evi~~Ie~~g-g 139 (258)
T PF09872_consen 77 ASEILMTALRRGLIDAAVIVC-----------D-----GAGTVITTNPELVQGIGGRMSGLVSTTPIPEVIERIEEKG-G 139 (258)
T ss_pred HHHHHHHHHhcCCcceEEEEe-----------c-----CCCeEEeCCHHHHhhccceeeeeeeccchHHHHHHHHhcC-C
Confidence 478999999999999999875 3 244678888886655433 3222 246666666666553 3
Q ss_pred EEE--EEecchHHHHHHHHHHhcCCCce-EEEc
Q 011872 216 RLL--FCGVGCQVQALRSVEHHLNLEKL-YVLG 245 (475)
Q Consensus 216 kVl--fvGtPCQI~ALr~l~~~l~~e~L-y~Ig 245 (475)
-|+ =.+.==|+.|+++... .||+++ .+|-
T Consensus 140 iVLd~~tA~IDq~~Gv~kAie-~Gyk~IaVTV~ 171 (258)
T PF09872_consen 140 IVLDPETARIDQVEGVKKAIE-MGYKRIAVTVA 171 (258)
T ss_pred EEeCCccccccHHHHHHHHHH-cCCceEEEEec
Confidence 333 2344568888887655 577765 5554
No 102
>CHL00065 psaC photosystem I subunit VII
Probab=75.77 E-value=1 Score=36.85 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=17.6
Q ss_pred CCCCCCccCCchhhcchhhhhh
Q 011872 60 PAKDHCSRCGLCDTYYIAHVKD 81 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~~~ 81 (475)
+..+.|.+||.|..+||...+.
T Consensus 43 ~~~~~C~~C~~C~~~CP~~Ai~ 64 (81)
T CHL00065 43 PRTEDCVGCKRCESACPTDFLS 64 (81)
T ss_pred CCCCcCCChhhhhhhcCccccE
Confidence 4457899999999999985443
No 103
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=75.69 E-value=1.1 Score=43.64 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=28.2
Q ss_pred CCCCCCCc-----cCCchhhcchhhhhhhhhc---------------C---CCCcccccccCcc
Q 011872 59 YPAKDHCS-----RCGLCDTYYIAHVKDACAF---------------L---GDGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCt-----GCGaC~~iCp~~~~~a~~f---------------~---~~G~~~c~~vCp~ 99 (475)
.++.+.|. +||+|..+||... .++.+ + -.||+.|+++||.
T Consensus 127 ~id~~~C~~~~g~~C~~C~~~CP~~~-~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~ 189 (213)
T TIGR00397 127 LVGHETCLNYKGLNCSICVRVCPIRG-EAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVL 189 (213)
T ss_pred EECCCCcccCCCCCcccchhhCCCCc-ceEEEecccccCCcccceEEecccCCCcchhhHhCCC
Confidence 46788898 9999999999621 12211 1 1268899999995
No 104
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=75.31 E-value=1.1 Score=51.47 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=26.3
Q ss_pred CCCCCccCCchhhcchhhhhh--hhhc--------------CCCCcccccccCcc
Q 011872 61 AKDHCSRCGLCDTYYIAHVKD--ACAF--------------LGDGMSRIEGLETV 99 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~~~~--a~~f--------------~~~G~~~c~~vCp~ 99 (475)
..+.|.+||.|..+||.+... .+.+ ...+|..|..+||.
T Consensus 402 eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPt 456 (781)
T PRK00941 402 LAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPK 456 (781)
T ss_pred hhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCC
Confidence 457799999999999974210 1100 11257889999996
No 105
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=74.91 E-value=1.1 Score=42.24 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCccCCchhhcchh
Q 011872 54 PPGGTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 54 ~~~~~~~~~~lCtGCGaC~~iCp~ 77 (475)
.-|...++.+.|.|||.|..+||-
T Consensus 73 ~~~~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 73 DDGAVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred cCCceEEchhhccCcchhhhcCCc
Confidence 356678889999999999999994
No 106
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=74.89 E-value=1.1 Score=44.01 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=10.0
Q ss_pred CCCCccCCc--hhhcchhh
Q 011872 62 KDHCSRCGL--CDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGa--C~~iCp~~ 78 (475)
...|..|+. |..+||.+
T Consensus 91 ~~~C~~C~~~~Cv~~CP~g 109 (225)
T TIGR03149 91 RKSCQHCDNAPCVAVCPTG 109 (225)
T ss_pred chhccCCcCcChHhhCCCC
Confidence 455666663 66666653
No 107
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=74.83 E-value=0.8 Score=44.24 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=24.2
Q ss_pred hhhhhhhhhcccc----CCCCCCCCCCCCCccCCchhhcchhh
Q 011872 40 VKLREDWRKRSKP----IPPGGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 40 ~~~~~~~~~~~~~----~~~~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
+....||+.-+.. +...+.+...+-|..||+|.+.||.+
T Consensus 12 ~~v~~e~~~~~ve~~~~~~~e~~~~~l~~C~QCG~CT~sCPs~ 54 (195)
T COG1150 12 EDVSPEEKEEAVERTEEVKGEGRLDYLEGCYQCGTCTGSCPSG 54 (195)
T ss_pred cccChHHHHHHHHHHHHhcCchhhhhHhHhhccCcccCCCCCc
Confidence 4466777743332 22222232345599999999999964
No 108
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=74.83 E-value=1.1 Score=47.22 Aligned_cols=16 Identities=25% Similarity=0.773 Sum_probs=14.1
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-+.|.+||.|.++||.
T Consensus 22 ~~~C~~Cg~C~~~CP~ 37 (407)
T PRK11274 22 LRKCVHCGFCTATCPT 37 (407)
T ss_pred HHhCccCCCccccCCc
Confidence 3579999999999995
No 109
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=74.70 E-value=1.2 Score=50.15 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCccCCchhhcchhhhhh-------hhhcC---CCCcccccccCcc
Q 011872 55 PGGTYPAKDHCSRCGLCDTYYIAHVKD-------ACAFL---GDGMSRIEGLETV 99 (475)
Q Consensus 55 ~~~~~~~~~lCtGCGaC~~iCp~~~~~-------a~~f~---~~G~~~c~~vCp~ 99 (475)
++...++.+.|.+||.|..+||..... .|.+- ..+|+.|.+.||.
T Consensus 77 ~~~v~~d~~~C~gC~~C~~~CP~~ai~~~~~~~~kC~~C~~~~~~~~~Cv~~CP~ 131 (639)
T PRK12809 77 SDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQKCDLCNQRSSGTQACIEVCPT 131 (639)
T ss_pred ccceecChhhCcchhhHhhhcCCCCEEccCCCcccccCCcccCCCCChhhhhCcc
Confidence 445667889999999999999964211 11111 1133468899995
No 110
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=74.20 E-value=0.93 Score=49.12 Aligned_cols=40 Identities=10% Similarity=-0.031 Sum_probs=24.1
Q ss_pred CCCCCCccCC--chhhcchhhhhh-----hh-hcCC---CCcccccccCcc
Q 011872 60 PAKDHCSRCG--LCDTYYIAHVKD-----AC-AFLG---DGMSRIEGLETV 99 (475)
Q Consensus 60 ~~~~lCtGCG--aC~~iCp~~~~~-----a~-~f~~---~G~~~c~~vCp~ 99 (475)
.....|.+|+ .|..+||...+. .+ .++. .||..|...||.
T Consensus 178 y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~ID~dkCiGCg~CV~ACPy 228 (492)
T TIGR01660 178 YLPRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPY 228 (492)
T ss_pred ECCCcCcCCCcccchhhCccCCeEEecCCCeEEEehhhccChHHHHHhCCC
Confidence 3467788887 888888864321 01 0111 156778888884
No 111
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=74.19 E-value=0.89 Score=48.38 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=27.8
Q ss_pred CCCCCCCccCCchh--hcchhhhhhhh-hcCC---CCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCD--TYYIAHVKDAC-AFLG---DGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~--~iCp~~~~~a~-~f~~---~G~~~c~~vCp~ 99 (475)
....+.|++|+.|. .+||...+..- ..+. .+|+.|.++||.
T Consensus 298 ~id~dkCi~Cg~C~~~~aCPt~AI~~~~~Id~~~Ci~CGaCV~aCP~ 344 (391)
T TIGR03287 298 KYNPERCENCDPCLVEEACPVPAIKKDGTLNTEDCFGCGYCAEICPG 344 (391)
T ss_pred EEchhhCcCCCCCcCCcCCCHhhEeccceeChHhCcChHHHHhhCCc
Confidence 45678899999994 89997533210 1111 267889999995
No 112
>PRK08764 ferredoxin; Provisional
Probab=73.61 E-value=1.5 Score=39.60 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=25.7
Q ss_pred CCCCCCccCCchhhcchhhhhhhh-----hcCCC---CcccccccCcc
Q 011872 60 PAKDHCSRCGLCDTYYIAHVKDAC-----AFLGD---GMSRIEGLETV 99 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~~~a~-----~f~~~---G~~~c~~vCp~ 99 (475)
...+.|++||.|..+||...+..- .++.+ +|..|.++||.
T Consensus 82 ~~~~~Ci~C~~Cv~aCp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~~CP~ 129 (135)
T PRK08764 82 IVEADCIGCTKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCVPACPV 129 (135)
T ss_pred ECcccCcCcchHHHhCChhhcCccCCCceeecCCcCcCccchhhhcCc
Confidence 345789999999999996422110 01111 46678888885
No 113
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=73.56 E-value=1.3 Score=46.22 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCCCCCccCC--chhhcchhhhhhh------hhcCCC---CcccccccCccc
Q 011872 60 PAKDHCSRCG--LCDTYYIAHVKDA------CAFLGD---GMSRIEGLETVV 100 (475)
Q Consensus 60 ~~~~lCtGCG--aC~~iCp~~~~~a------~~f~~~---G~~~c~~vCp~~ 100 (475)
..+..|..|+ .|..+||...... ..++.+ ||..|...||..
T Consensus 107 ~~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~g 158 (328)
T PRK10882 107 YIKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDKDVCTGCRYCMVACPFN 158 (328)
T ss_pred cccccCCCcCchhhHhhCCCCCEEecccCCcccCCHHHcCcccHHHHhCCcc
Confidence 3456798898 8999998642211 111111 577788888853
No 114
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=73.45 E-value=1 Score=39.09 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=17.5
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||..
T Consensus 77 ~id~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09624 77 VFDYDYCKGCGICANECPTK 96 (105)
T ss_pred EECchhCCCcCchhhhcCcC
Confidence 56778999999999999974
No 115
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=73.35 E-value=1.3 Score=40.08 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|.+||.|..+||.+
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EeCcCcCcChhHHHHHCCcC
Confidence 35678999999999999974
No 116
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=73.24 E-value=1.4 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|.+||+|..+||..
T Consensus 95 ~id~~~C~~Cg~C~~~CP~~ 114 (167)
T CHL00014 95 SIDFGVCIFCGNCVEYCPTN 114 (167)
T ss_pred cCCCCcCcCccchHhhcCcC
Confidence 45667899999999999974
No 117
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=72.99 E-value=0.86 Score=39.31 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.6
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
|-..++.++|.|||.|...||-+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ 55 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYG 55 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS
T ss_pred CeEEechhhccCchhhhhhhccC
Confidence 55677899999999999999954
No 118
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=72.81 E-value=0.98 Score=46.13 Aligned_cols=41 Identities=20% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCCCCCccCCc--hhhcchhhhhh------hhhcCCC---CcccccccCccc
Q 011872 60 PAKDHCSRCGL--CDTYYIAHVKD------ACAFLGD---GMSRIEGLETVV 100 (475)
Q Consensus 60 ~~~~lCtGCGa--C~~iCp~~~~~------a~~f~~~---G~~~c~~vCp~~ 100 (475)
..+..|.+|+- |..+||.+.+. ...++.+ ||..|..+||..
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFN 139 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeEEEcCCCcEEEeHHHCCcchHHHhhCCCC
Confidence 35667999997 99999952211 0111211 577889999963
No 119
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=72.77 E-value=2 Score=51.03 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCcc----CCchhhcchhhhhhhh---hc-------C----CCCcccccccCcc
Q 011872 63 DHCSR----CGLCDTYYIAHVKDAC---AF-------L----GDGMSRIEGLETV 99 (475)
Q Consensus 63 ~lCtG----CGaC~~iCp~~~~~a~---~f-------~----~~G~~~c~~vCp~ 99 (475)
+.|.+ ||.|..+||.+....+ .+ . ..+|+.|..+||.
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~ 935 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPY 935 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCC
Confidence 78996 9999999997643211 11 1 2357889999996
No 120
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=72.44 E-value=1.5 Score=45.02 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=18.8
Q ss_pred CCCCCCCCCccCCchhhcchhh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
...++.+.|.+||.|..+||..
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHh
Confidence 3456788999999999999974
No 121
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=72.40 E-value=1.5 Score=41.79 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||..
T Consensus 98 ~id~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 98 SIDFGVCIFCGNCVEYCPTN 117 (183)
T ss_pred ecCcccccCcCchhhhcCCC
Confidence 46678899999999999975
No 122
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=72.30 E-value=1 Score=44.95 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=11.7
Q ss_pred CCCCccCCc--hhhcchhh
Q 011872 62 KDHCSRCGL--CDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGa--C~~iCp~~ 78 (475)
...|.+|+. |..+||..
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~ 115 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQ 115 (244)
T ss_pred chhcCCcCCccCccccCCC
Confidence 456777774 77777753
No 123
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=71.57 E-value=1.2 Score=33.48 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=8.3
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|++||.|..+||.+
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 7899999999999963
No 124
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=71.19 E-value=1.4 Score=43.03 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccCCchhhcchh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~ 77 (475)
|-..+++++|.|||.|...||=
T Consensus 93 GiV~vd~d~CIGC~yCi~ACPy 114 (203)
T COG0437 93 GIVLVDKDLCIGCGYCIAACPY 114 (203)
T ss_pred CEEEecCCcccCchHHHhhCCC
Confidence 3357789999999999999994
No 125
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=71.17 E-value=1.7 Score=43.30 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=14.3
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|..||+|.+.||.-
T Consensus 141 ~~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 141 LSECILCGCCTAACPSI 157 (234)
T ss_pred hhhccccchhhhhCCcc
Confidence 34699999999999953
No 126
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=71.16 E-value=1.5 Score=35.70 Aligned_cols=20 Identities=20% Similarity=0.657 Sum_probs=16.6
Q ss_pred CCCCCCccCCchhhcchhhh
Q 011872 60 PAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~ 79 (475)
+..+.|.+||.|...||.+.
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~a 61 (80)
T TIGR03048 42 PRTEDCVGCKRCESACPTDF 61 (80)
T ss_pred CCCCcCcChhHHHHhcCccc
Confidence 34578999999999999753
No 127
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=70.94 E-value=1.7 Score=43.19 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.8
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-..|..||+|.++||.
T Consensus 143 ~~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 143 LYECILCACCSTACPS 158 (235)
T ss_pred hhhCcccccccccccC
Confidence 3459999999999995
No 128
>PRK10194 ferredoxin-type protein; Provisional
Probab=70.61 E-value=1.6 Score=40.59 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=9.1
Q ss_pred CccCCchhhcchh
Q 011872 65 CSRCGLCDTYYIA 77 (475)
Q Consensus 65 CtGCGaC~~iCp~ 77 (475)
|.+|+.|..+||.
T Consensus 106 ~~~C~~C~~~CP~ 118 (163)
T PRK10194 106 SVECRRCQDSCEP 118 (163)
T ss_pred CCCcCcchhhCCH
Confidence 3677777777773
No 129
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=70.10 E-value=1.2 Score=44.59 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCCCCc-----cCCchhhcchhh-hhhhhhc----------------C---CCCcccccccCccc
Q 011872 60 PAKDHCS-----RCGLCDTYYIAH-VKDACAF----------------L---GDGMSRIEGLETVV 100 (475)
Q Consensus 60 ~~~~lCt-----GCGaC~~iCp~~-~~~a~~f----------------~---~~G~~~c~~vCp~~ 100 (475)
++.+.|. +||.|..+||.. ..+.+.. + -.||+.|+++||..
T Consensus 134 id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 134 VDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred cchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCC
Confidence 7889998 899999999941 1111111 1 12688999999963
No 130
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=69.78 E-value=1.8 Score=37.23 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|++||.|..+||..
T Consensus 49 ~i~~~~C~~C~~C~~~CP~~ 68 (103)
T PRK09626 49 VVHPESCIGCRECELHCPDF 68 (103)
T ss_pred EeCCccCCCcCcchhhCChh
Confidence 34567899999999999974
No 131
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=69.76 E-value=1.3 Score=44.46 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|+|||.|..+||.+
T Consensus 180 ~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 180 TVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred EEeHHHCcCcChhhHhcCCC
Confidence 45678999999999999974
No 132
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=69.41 E-value=1.5 Score=38.00 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.1
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.++|++||.|..+||..
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09623 76 VAIDYDYCKGCGICANECPTK 96 (105)
T ss_pred EEeCchhCcCcchhhhhcCcC
Confidence 356789999999999999974
No 133
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=69.34 E-value=1.9 Score=44.18 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=15.5
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
+.+.|++||.|..+||.+
T Consensus 287 d~~~C~gCg~C~~~CP~~ 304 (312)
T PRK14028 287 DYQYCKGCGVCAEVCPTG 304 (312)
T ss_pred CcccCcCcCchhhhCCHh
Confidence 446799999999999974
No 134
>PRK06991 ferredoxin; Provisional
Probab=69.34 E-value=1.4 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=17.9
Q ss_pred CCCCCCCccCCchhhcchhhhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVK 80 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~ 80 (475)
.+..+.|++||.|..+||.+.+
T Consensus 111 ~v~~~~CigCg~Cv~vCP~~AI 132 (270)
T PRK06991 111 TVLADLCTGCDLCVPPCPVDCI 132 (270)
T ss_pred eeCHhhCCCchHHHhhCCcCCe
Confidence 3557889999999999997533
No 135
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=68.74 E-value=1.9 Score=48.21 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=16.9
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+++.-.|.|||+|..+||..
T Consensus 603 ~~id~~~C~GCg~C~~iCP~~ 623 (640)
T COG4231 603 ARIDPSSCNGCGSCVEVCPSF 623 (640)
T ss_pred eeecccccccchhhhhcCchh
Confidence 345556799999999999963
No 136
>PRK02651 photosystem I subunit VII; Provisional
Probab=68.72 E-value=1.9 Score=35.05 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.7
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
..+.|.+||.|..+||..
T Consensus 44 ~~~~C~~Cg~C~~~CP~~ 61 (81)
T PRK02651 44 RTEDCVGCKRCETACPTD 61 (81)
T ss_pred CCCcCCChhhhhhhcCCC
Confidence 457899999999999974
No 137
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=68.53 E-value=2.2 Score=39.70 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.2
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||..
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~ 112 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTD 112 (164)
T ss_pred ecCCCcCcccCcchhhcCcC
Confidence 35678999999999999974
No 138
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=68.51 E-value=1.7 Score=48.55 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=27.3
Q ss_pred CCCCCCCCccCCchhh--cchhhhhh--hhhcC--CCCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDT--YYIAHVKD--ACAFL--GDGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~--iCp~~~~~--a~~f~--~~G~~~c~~vCp~ 99 (475)
..++.+.|++||.|.. .||..... ...++ .-+|+.|.++||.
T Consensus 545 ~~id~~~C~~C~~C~~~~~CP~~~~~~~~~~i~~~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 545 YKVDQDKCIGCKKCIKELGCPAIEPEDKEAVIDPLCTGCGVCAQICPF 592 (595)
T ss_pred EEEcCCcCCCccccccccCCCCccccCCcceeCCCCcCHHHHHhhCcc
Confidence 3556789999999999 99952110 01111 1257788899984
No 139
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=68.45 E-value=2.1 Score=37.48 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.5
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.....+.|.+||.|..+||..
T Consensus 77 ~~~~~~~C~~Cg~Cv~~CP~~ 97 (122)
T TIGR01971 77 YQINFGRCIFCGLCEEACPTD 97 (122)
T ss_pred ceECcccCCCCCchhhhCCCc
Confidence 345678899999999999974
No 140
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=67.76 E-value=2.6 Score=44.42 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCceEEEcccCCCCCCH
Q 011872 225 QVQALRSVEHHLNLEKLYVLGTNCVDNGTR 254 (475)
Q Consensus 225 QI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~ 254 (475)
...|+.++++.+|++-.+.=+-.|=|.|..
T Consensus 179 ~~~a~v~vL~~~G~~v~~~~~~~CCG~p~~ 208 (397)
T TIGR03379 179 LGKDLVKVLNAMNIGVQLLEKEKCCGVPLI 208 (397)
T ss_pred HHHHHHHHHHHCCcEEEeCCCCCccCccHH
Confidence 556777777777775444435677777765
No 141
>PRK06273 ferredoxin; Provisional
Probab=66.81 E-value=2.3 Score=40.04 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++...|++||.|..+||..
T Consensus 87 ~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 87 KIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred ecccccCcCCCCcchhCCHh
Confidence 55678899999999999974
No 142
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=66.12 E-value=2.1 Score=42.91 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=24.6
Q ss_pred CCCCccCCchhhcchhhhhhh----hhc-C---CCCcccccccCcc
Q 011872 62 KDHCSRCGLCDTYYIAHVKDA----CAF-L---GDGMSRIEGLETV 99 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~a----~~f-~---~~G~~~c~~vCp~ 99 (475)
.+.|.+|+.|...||...... ... + ..+|..|...||.
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~~~~~~~v~~~~~C~~C~~Ci~~CP~ 213 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLELKEGKLVVTDLLNCSLCKLCERACPG 213 (263)
T ss_pred cccCCchHHHHHhCCccccEecCCeEEEeChhhCCCchHHHHhCCC
Confidence 689999999999999742211 000 1 1135677888884
No 143
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=66.00 E-value=2.4 Score=38.58 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=14.1
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
+.|..||.|.+.||..
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 4799999999999953
No 144
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=65.20 E-value=2.7 Score=35.99 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||.+
T Consensus 62 ~i~~~~C~~Cg~C~~~CP~~ 81 (101)
T TIGR00402 62 EFDNAECDFCGKCAEACPTN 81 (101)
T ss_pred EecCccCcCccChhhHCCcc
Confidence 45677899999999999975
No 145
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=64.98 E-value=2.9 Score=45.36 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=14.6
Q ss_pred CCCCCccCCchhhcchh
Q 011872 61 AKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~ 77 (475)
...-|..||.|..+||.
T Consensus 372 ~~~~CI~Cg~C~~vCP~ 388 (448)
T PRK05352 372 SERAMVPIGNYERVMPL 388 (448)
T ss_pred CCcceeecCcHhhcCCC
Confidence 45679999999999994
No 146
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=64.91 E-value=2.2 Score=40.23 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=8.5
Q ss_pred CCCccCC--chhhcchh
Q 011872 63 DHCSRCG--LCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCG--aC~~iCp~ 77 (475)
..|.+|+ .|..+||.
T Consensus 56 ~~C~~C~~~~C~~~Cp~ 72 (181)
T PRK10330 56 TVCRQCEDAPCANVCPN 72 (181)
T ss_pred CcCcCcCCcHHHHHcCc
Confidence 4555565 56666654
No 147
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=64.64 E-value=2.1 Score=42.83 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCCccCCchhhcchhhhhhhhh-----cC---CCCcccccccCcc
Q 011872 62 KDHCSRCGLCDTYYIAHVKDACA-----FL---GDGMSRIEGLETV 99 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~a~~-----f~---~~G~~~c~~vCp~ 99 (475)
.+.|.+|+.|...||......-. .+ ..+|..|...||.
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLELEEGKVVVEDLEDCSLCKLCERACDA 213 (259)
T ss_pred hhhCCChHHHHHhCCccceEccCCeeEEeChhhCcCchHHHHhCCC
Confidence 47899999999999975322100 01 1135667888884
No 148
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.35 E-value=2.8 Score=47.34 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
+...++.+.|++||.|..+||..
T Consensus 78 ~~~~id~~~C~~C~~C~~~CP~~ 100 (654)
T PRK12769 78 DSIQVNQQKCIGCKSCVVACPFG 100 (654)
T ss_pred CeEEEecccccCcChhcccCCcc
Confidence 44567888999999999999964
No 149
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=63.33 E-value=2.7 Score=34.56 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.++|+.||+|..+||..
T Consensus 58 ~~~~~~~C~~C~~C~~~Cp~~ 78 (99)
T COG1145 58 VVIDPDLCVLCGACLKVCPVD 78 (99)
T ss_pred EEEccccCccccchHhhCCcC
Confidence 455689999999999999974
No 150
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=63.24 E-value=2.6 Score=39.74 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.++|+||++|..+||.
T Consensus 5 ~~~d~~~C~gC~~C~~aC~~ 24 (181)
T PRK10330 5 IIADASKCIGCRTCEVACVV 24 (181)
T ss_pred EEeCcccCcCccHHHHHHHH
Confidence 46788999999999999985
No 151
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=62.43 E-value=2.8 Score=36.84 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|.+||.|..+||..
T Consensus 69 ~i~~~~C~~Cg~Cv~~CP~~ 88 (120)
T PRK08348 69 ALWTGRCVFCGQCVDVCPTG 88 (120)
T ss_pred EecCCcCcChhhhHHhCCcC
Confidence 45567899999999999974
No 152
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=62.13 E-value=3.6 Score=31.40 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=9.5
Q ss_pred CCccCCchhhcchhh
Q 011872 64 HCSRCGLCDTYYIAH 78 (475)
Q Consensus 64 lCtGCGaC~~iCp~~ 78 (475)
.|++||.|...||..
T Consensus 1 ~C~~Cg~C~~~CP~~ 15 (61)
T PF13534_consen 1 ACTQCGYCVPACPSY 15 (61)
T ss_dssp T----STTGGGSHHH
T ss_pred CCCCCCcCcccCCCc
Confidence 499999999999964
No 153
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=61.58 E-value=2.9 Score=40.19 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|++||.|..+||..
T Consensus 140 ~v~~~~C~~Cg~Cv~vCP~~ 159 (191)
T PRK05113 140 TVISDLCTGCDLCVAPCPTD 159 (191)
T ss_pred eecCCcCCchHHHHHHcCcC
Confidence 34567899999999999974
No 154
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=60.88 E-value=2.5 Score=39.07 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
+++.++|+||++|..+|+.
T Consensus 5 ~~d~~~C~gC~~C~~aC~~ 23 (161)
T TIGR02951 5 YVDQTRCSGCKTCQIACKD 23 (161)
T ss_pred EEEcccCcCchHHHHHHHH
Confidence 5678899999999999984
No 155
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=60.61 E-value=3.7 Score=32.98 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|.+||.|..+||.+
T Consensus 51 ~i~~~~C~~C~~C~~~CP~~ 70 (78)
T TIGR02179 51 GIDYDYCKGCGICANVCPVK 70 (78)
T ss_pred EecCccCcCccchhhhCCcc
Confidence 34567899999999999974
No 156
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=60.40 E-value=3.3 Score=38.23 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=9.9
Q ss_pred CCCCccCC--chhhcchh
Q 011872 62 KDHCSRCG--LCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCG--aC~~iCp~ 77 (475)
...|.+|+ .|..+||.
T Consensus 61 ~~~C~~C~~~~C~~~CP~ 78 (161)
T TIGR02951 61 SISCNHCADPACVKNCPT 78 (161)
T ss_pred CccCCCcCCcchHHhCCC
Confidence 45566666 66666664
No 157
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=60.36 E-value=3.2 Score=41.79 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=17.8
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
...+...|.+||.|..+||.+
T Consensus 77 ~~~~~~~C~~Cg~C~~~CP~~ 97 (295)
T TIGR02494 77 IIIRREKCTHCGKCTEACPSG 97 (295)
T ss_pred eeechhhcCchhHhhccCcHh
Confidence 356678899999999999974
No 158
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=60.24 E-value=3.6 Score=43.07 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.2
Q ss_pred CCCCCCCCCccCCchhhcchh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~ 77 (475)
...++.+.|.+||.|..+||.
T Consensus 208 ~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 208 SLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred ceeeccccCCcCCchHHhCch
Confidence 357778889999999999985
No 159
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=59.83 E-value=4.2 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.5
Q ss_pred CCCccCCchhhcchh
Q 011872 63 DHCSRCGLCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~ 77 (475)
..|+|||+|..+||-
T Consensus 52 ~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 52 WDCYGCGICQKVCPF 66 (67)
T ss_pred CCccccchhhccCCC
Confidence 445799999999994
No 160
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=59.50 E-value=4 Score=46.85 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=29.9
Q ss_pred hhhhhhhhhccccCCCCCCCCC-CCCCccCCchhhcchhh
Q 011872 40 VKLREDWRKRSKPIPPGGTYPA-KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~~lCtGCGaC~~iCp~~ 78 (475)
+.+.-||+..--++-.+..++- ..-|-.||.|+++||.+
T Consensus 168 eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 168 EALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVN 207 (978)
T ss_pred eEEEeecccCCcceecCCCCccccccccccCccceecchh
Confidence 5577899887777766665443 45599999999999975
No 161
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=59.40 E-value=3.5 Score=41.21 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||.+
T Consensus 230 ~i~~~~C~~Cg~Cv~~CP~~ 249 (255)
T TIGR02163 230 LVLSGDCTLCGRCIDVCHED 249 (255)
T ss_pred EeccccccchhHHHHhCCcc
Confidence 45677899999999999974
No 162
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=59.33 E-value=3.4 Score=44.03 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.+..++|++||+|..+||.
T Consensus 373 ~i~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 373 EVIEEECVGCNLCAHVCPV 391 (420)
T ss_pred EechhhCcccchHHhhCCC
Confidence 4678899999999999997
No 163
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=59.17 E-value=3.7 Score=49.66 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|+.+||.+
T Consensus 735 ~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 735 QISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred EeccccCcCccchhhhcCCC
Confidence 35678899999999999975
No 164
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=59.07 E-value=2.2 Score=41.94 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=17.7
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.+.|+|||+|..+||.
T Consensus 41 ~~iD~~rCigC~~C~~aC~~ 60 (225)
T TIGR03149 41 MVHDETACIGCTACMDACRE 60 (225)
T ss_pred EEEEHHHCcCcHHHHHHhhH
Confidence 46778999999999999995
No 165
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=58.85 E-value=3.2 Score=38.78 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=16.6
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
+..+.|++||.|..+||.+
T Consensus 140 i~~~~C~~Cg~Cv~~CP~~ 158 (165)
T TIGR01944 140 VIADECTGCDLCVEPCPTD 158 (165)
T ss_pred eecccccChhHHHHhcCcC
Confidence 4568899999999999974
No 166
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=58.60 E-value=5 Score=41.60 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=20.2
Q ss_pred ccCCCCCCCCC--CCCCccCCchhhcchhh
Q 011872 51 KPIPPGGTYPA--KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 51 ~~~~~~~~~~~--~~lCtGCGaC~~iCp~~ 78 (475)
-||.|+.+... .+.|..|+.|+..||.+
T Consensus 191 lpL~p~~Pid~Gi~~fC~~C~~C~~~CP~~ 220 (314)
T TIGR02486 191 LPLVPTKPIDAGMAKFCETCGKCADECPSG 220 (314)
T ss_pred cCCCCCCcccccccccCcchhHHHhhCCcc
Confidence 45566553221 47899999999999975
No 167
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=58.06 E-value=52 Score=29.46 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=42.6
Q ss_pred chHHHHHHHHcCCCEEEEEecc------hHHHH-------HHHHHHhcCCCc--eEEEcccC-----CCCCCHHHHHHHH
Q 011872 202 NLNTLALVEAAGVKRLLFCGVG------CQVQA-------LRSVEHHLNLEK--LYVLGTNC-----VDNGTREGLDKFL 261 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtP------CQI~A-------Lr~l~~~l~~e~--Ly~Igl~C-----~G~~S~~~~~~~L 261 (475)
+.+.|..+.+.|.+-++++..+ .++.+ ++.+.+.++... .|.....+ ..-|+++.+...+
T Consensus 32 ~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~ 111 (147)
T TIGR01656 32 AVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEAL 111 (147)
T ss_pred hHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHH
Confidence 4556666666654445555555 33343 333344445431 22222211 1369999999999
Q ss_pred HHhCCCCCceEEEE
Q 011872 262 KAASSEPETVLHYE 275 (475)
Q Consensus 262 ~~~~~~~~~V~~i~ 275 (475)
+.++.+++++..+.
T Consensus 112 ~~~~~~~~e~i~IG 125 (147)
T TIGR01656 112 KRLGVDASRSLVVG 125 (147)
T ss_pred HHcCCChHHEEEEc
Confidence 99998888776663
No 168
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=57.89 E-value=3.1 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.8
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
++.+.|.+||.|..+||.+
T Consensus 42 id~~~C~~Cg~Cv~~CP~~ 60 (132)
T TIGR02060 42 IEPDMCWECYSCVKACPQG 60 (132)
T ss_pred cCchhCccHHHHHHhCCcC
Confidence 5678999999999999974
No 169
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=57.55 E-value=4.8 Score=42.89 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=25.4
Q ss_pred CCCCccCCchhhcchhhh--hhhhhcCC----------CCcccccccCccc
Q 011872 62 KDHCSRCGLCDTYYIAHV--KDACAFLG----------DGMSRIEGLETVV 100 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~--~~a~~f~~----------~G~~~c~~vCp~~ 100 (475)
-+.|.+|..|...||.-- .+...+.+ -+|+.|...||..
T Consensus 32 ~~iC~~Cr~C~~~CpvfP~l~~r~~~~~~d~~~~a~~C~~Cg~C~~~CP~a 82 (389)
T PRK15033 32 MQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQYA 82 (389)
T ss_pred hHhCCCCCCccccCCCchhhhhhhcCChhhhHHHHHhCcCcccccccCcCC
Confidence 478999999999998321 01111111 1477899999973
No 170
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=56.78 E-value=5.1 Score=42.51 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCCCccCCchhhcchhhhhh---------h---hhcCCCCcccccccCcccc
Q 011872 62 KDHCSRCGLCDTYYIAHVKD---------A---CAFLGDGMSRIEGLETVVH 101 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~---------a---~~f~~~G~~~c~~vCp~~~ 101 (475)
-+.|.+|+.|...||.--.. . ..-..-+|+.|...||..-
T Consensus 13 l~iC~~C~~C~~~CpvfPa~~~~~~~~~~d~~~la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 13 LNLCNSCGYCTGLCAVFPAAQGRPDLTRGDLRHLAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred hHhCcCcCCccccCCCccccccccccCHHHHHHHHHHCcCcccccccCcCCC
Confidence 46899999999999842100 0 0001114778889999643
No 171
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=56.57 E-value=4.3 Score=38.34 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||..
T Consensus 69 ~i~~~~C~~Cg~C~~vCP~~ 88 (180)
T PRK12387 69 EFNLGRCIFCGRCEEVCPTA 88 (180)
T ss_pred eeccccCcCccchhhhcCcC
Confidence 35678899999999999974
No 172
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=56.26 E-value=5 Score=40.44 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=16.6
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
+..+.|++||.|..+||.+
T Consensus 239 i~~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSED 257 (271)
T ss_pred eCcccCcChhHHHhhcCcc
Confidence 5667899999999999974
No 173
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=55.31 E-value=4.7 Score=48.05 Aligned_cols=19 Identities=21% Similarity=0.579 Sum_probs=16.1
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
+...++|.+||.|+.+||.
T Consensus 922 ~~~~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 922 VHLDAMCNECGNCAQFCPW 940 (1019)
T ss_pred EEcCccCccccchhhhCCC
Confidence 3336899999999999996
No 174
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=54.99 E-value=5.1 Score=38.09 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.5
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++-+.|+-||.|..+||..
T Consensus 91 ~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 91 DINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred eeccccccccCchhhhCchh
Confidence 45778899999999999974
No 175
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=54.31 E-value=7.8 Score=42.16 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=14.9
Q ss_pred CCCCCCccCCchhhcchh
Q 011872 60 PAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~ 77 (475)
....-|..||.|..+||.
T Consensus 370 ~~~~aCI~CG~C~~vCPm 387 (447)
T TIGR01936 370 GGERAMIPIGIYERVMPL 387 (447)
T ss_pred CCccceeECChHhhcCCC
Confidence 345569999999999994
No 176
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=54.18 E-value=4.8 Score=39.22 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.7
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|+.||.|..+||++
T Consensus 193 ~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 193 VWRCTTCMNCSEVCPKG 209 (220)
T ss_pred CccCccccccccccCCC
Confidence 35699999999999974
No 177
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=53.63 E-value=5.2 Score=43.56 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=20.4
Q ss_pred CCCCCCCccCCchhhcchhhhhhhhhcC
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~~f~ 86 (475)
.++.++|.||+.|..+||.. ++.|+
T Consensus 210 ~ID~dkCiGCg~CV~ACPyg---AI~~n 234 (492)
T TIGR01660 210 LIDQDKCRGWRMCISGCPYK---KIYFN 234 (492)
T ss_pred EEehhhccChHHHHHhCCCC---CcEec
Confidence 56889999999999999964 45555
No 178
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=53.31 E-value=5.3 Score=41.80 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.5
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
....|+|||.|..+||..
T Consensus 299 G~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEY 316 (334)
T ss_pred CccccCCcCchhhhCCCC
Confidence 356799999999999964
No 179
>PRK07118 ferredoxin; Validated
Probab=53.25 E-value=3.8 Score=41.75 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=25.5
Q ss_pred CCCCccCCchhhcchhhhhhh---hh-cCCC---CcccccccCcc
Q 011872 62 KDHCSRCGLCDTYYIAHVKDA---CA-FLGD---GMSRIEGLETV 99 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~a---~~-f~~~---G~~~c~~vCp~ 99 (475)
...|.+||.|..+||...+.. .. .+.+ +|+.|...||.
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~~~~~~~vId~~~C~~Cg~C~~~CP~ 256 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAITMENNLAVIDQEKCTSCGKCVEKCPT 256 (280)
T ss_pred ccccccchHHHhhCCcCcEEEeCCcEEEcCCcCCCHHHHHHhCCc
Confidence 577999999999999642211 00 0111 46778999996
No 180
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=53.06 E-value=5.2 Score=42.03 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=14.6
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
...|+|||.|..+||.+
T Consensus 306 ~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 306 YHMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhhCcCcCccccccCCC
Confidence 35699999999999964
No 181
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=52.81 E-value=4.7 Score=44.60 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=33.8
Q ss_pred hhhhhccccCCCCCCCCCCCCCccC------Cchhhcchhhhhhh------hhcCC---CCcccccccCcc
Q 011872 44 EDWRKRSKPIPPGGTYPAKDHCSRC------GLCDTYYIAHVKDA------CAFLG---DGMSRIEGLETV 99 (475)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~lCtGC------GaC~~iCp~~~~~a------~~f~~---~G~~~c~~vCp~ 99 (475)
.+|.+-...+.+.........|.+| +.|..+||.+.... ..++. .+|..|..+||.
T Consensus 485 ~~f~~~~~~~~~~~~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~~~~i~~~~C~~Cg~C~~~CP~ 555 (564)
T PRK12771 485 GDFDEVLGGLTEEEARQEAARCLSCGNCFECDNCYGACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPC 555 (564)
T ss_pred cChhhhhccCChhhhhhhcccCcccccccccchhhhhCChhheeeecCCceEEEecccCcChhHHHhhcCc
Confidence 3555555555555545555666555 89999999753221 11222 257789999995
No 182
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=52.39 E-value=6.1 Score=39.64 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.8
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
.....|..||.|.++||..
T Consensus 154 ~~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 154 FDAAACIGCGACVAACPNG 172 (250)
T ss_pred hCccccCCCcccccccCCc
Confidence 3456799999999999974
No 183
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=52.29 E-value=5.8 Score=36.04 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=13.7
Q ss_pred CCCccCCchhhcchh
Q 011872 63 DHCSRCGLCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~ 77 (475)
..|+.||.|..+||.
T Consensus 46 ~~C~~Cg~C~~~CP~ 60 (144)
T TIGR03290 46 WMCTTCYTCQERCPR 60 (144)
T ss_pred CcCcCcCchhhhcCC
Confidence 469999999999996
No 184
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=51.08 E-value=5.1 Score=39.48 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.9
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|++||.|...||.+
T Consensus 172 ~~i~~~~C~~Cg~C~~~CP~~ 192 (234)
T TIGR02700 172 AFIRLLKCVGCGKCKEACPYN 192 (234)
T ss_pred eEEchhhCCccchHHhhCCCC
Confidence 456778899999999999974
No 185
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=51.03 E-value=5.9 Score=39.66 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.9
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-..|..||+|.++||.
T Consensus 151 ~~~CI~CG~C~saCP~ 166 (249)
T PRK08640 151 LSKCMTCGCCLEACPN 166 (249)
T ss_pred hhhccCcCcccccCCC
Confidence 3459999999999995
No 186
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=50.74 E-value=5.3 Score=41.86 Aligned_cols=32 Identities=3% Similarity=-0.286 Sum_probs=23.1
Q ss_pred CccCCchhhcchhhhhhhhhcCC--C------------CcccccccCcc
Q 011872 65 CSRCGLCDTYYIAHVKDACAFLG--D------------GMSRIEGLETV 99 (475)
Q Consensus 65 CtGCGaC~~iCp~~~~~a~~f~~--~------------G~~~c~~vCp~ 99 (475)
|++||.|..+||.. ++.+.. + +|..|.++||.
T Consensus 183 ~c~~~~Cv~~CP~~---Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 183 VCEIPSVVAACPTG---ALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred hcCCCceEeeCchh---hceecccCCCCceeeccccCCcCCchHHhCch
Confidence 77889999999975 333311 1 57788999995
No 187
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=50.12 E-value=6 Score=38.56 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=15.0
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|..||+|.++||..
T Consensus 137 ~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 137 LSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhccccccccccCCCC
Confidence 47799999999999964
No 188
>PRK08764 ferredoxin; Provisional
Probab=49.88 E-value=6.7 Score=35.46 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|++||.|..+||..
T Consensus 111 ~v~~~~C~~Cg~Cv~~CP~~ 130 (135)
T PRK08764 111 TVIAPLCTGCELCVPACPVD 130 (135)
T ss_pred eecCCcCcCccchhhhcCcc
Confidence 35567899999999999974
No 189
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=49.80 E-value=4.8 Score=46.20 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=14.5
Q ss_pred CCCCCccCCchhhcch
Q 011872 61 AKDHCSRCGLCDTYYI 76 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp 76 (475)
+.+.|.-||.|+.+|-
T Consensus 147 dp~qCIlCgRCVeaCq 162 (978)
T COG3383 147 DPNQCILCGRCVEACQ 162 (978)
T ss_pred cchheeehhHHHHHHH
Confidence 6788999999999995
No 190
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=49.59 E-value=6.6 Score=37.35 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=16.1
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
+..+.|++||.|..+||..
T Consensus 70 ~~~~~C~~Cg~C~~~CPt~ 88 (181)
T PRK08222 70 LYLGRCIYCGRCEEVCPTR 88 (181)
T ss_pred eccCcCcCCCCcccccCcC
Confidence 3457899999999999974
No 191
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=48.32 E-value=7.4 Score=47.01 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCCCccchHHHHHHHhhhCCCCchh------hhhhhhhhhHhHHHHHHhh
Q 011872 398 QPAPKFVGNLIAFFINLVGPKGLEF------ARYSLDYHTIRNYLHVNRA 441 (475)
Q Consensus 398 ~~~P~~~~~~~~~~~~~~gpkglef------ar~~~~~~~~~~~~~~~~~ 441 (475)
+..=.|....+..|....+-||--| ++++.|--+|..|+..-..
T Consensus 1049 ~~~g~w~~~~~~~La~lk~LRgt~ld~fg~~~err~ER~li~~y~~~i~~ 1098 (1159)
T PRK13030 1049 RRFGPWMWPAFRLLARLKGLRGTWLDPFGRTAERRMERALIDDYEATLER 1098 (1159)
T ss_pred eecChhHHHHHHHHHHhhcccCCccCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4455688888888888889999887 6789999999999885544
No 192
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=48.16 E-value=7 Score=39.05 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=17.5
Q ss_pred CCCCCC-CCccCCchhhcchhh
Q 011872 58 TYPAKD-HCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~-lCtGCGaC~~iCp~~ 78 (475)
-++.++ .|.|||.|.+.||..
T Consensus 184 ~ll~qg~~C~G~~TC~A~CP~~ 205 (247)
T COG1941 184 CLLEQGLPCMGCGTCAASCPSR 205 (247)
T ss_pred eeecCCCcccCchhhhccCCcc
Confidence 355677 899999999999974
No 193
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=47.52 E-value=10 Score=40.00 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=17.4
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|.+||.|..+||..
T Consensus 46 ~id~~~C~~Cg~Cv~~CP~~ 65 (374)
T TIGR02512 46 LLDESNCIGCGQCSLVCPVG 65 (374)
T ss_pred ccCcccCcCccCHHHhCCCC
Confidence 46678999999999999974
No 194
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=47.49 E-value=5.4 Score=42.62 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=17.3
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|.+||+|..+||..
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGG 345 (391)
T ss_pred eeChHhCcChHHHHhhCCcc
Confidence 46778899999999999974
No 195
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=47.27 E-value=8.3 Score=37.16 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=18.0
Q ss_pred CCCCCccCCchhhcchhhhhh
Q 011872 61 AKDHCSRCGLCDTYYIAHVKD 81 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~~~~ 81 (475)
-.++||||++|...||.+++.
T Consensus 143 ~~dlCTGC~lCva~CPtdci~ 163 (198)
T COG2878 143 IADLCTGCDLCVAPCPTDCIE 163 (198)
T ss_pred HHHHhcCCCcccCCCCCCcee
Confidence 378999999999999987554
No 196
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=47.24 E-value=6 Score=41.16 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=27.5
Q ss_pred CCCCCCccCC--chhhcchhhhhh-----hh-hcCC---CCcccccccCcc
Q 011872 60 PAKDHCSRCG--LCDTYYIAHVKD-----AC-AFLG---DGMSRIEGLETV 99 (475)
Q Consensus 60 ~~~~lCtGCG--aC~~iCp~~~~~-----a~-~f~~---~G~~~c~~vCp~ 99 (475)
.....|..|+ .|..+||...+. .+ .++. .||..|...||.
T Consensus 126 y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~ID~ekCiGCg~Cv~ACPy 176 (321)
T TIGR03478 126 YLPRICNHCTNPACLAACPTGAIYKREEDGIVLVDQERCKGYRYCVEACPY 176 (321)
T ss_pred EecccCCCCCCccchhhCCcCcEEEecCCCeEEECHHHCcchHHHHHhCCC
Confidence 3577899999 999999964321 01 1221 267889999995
No 197
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=46.90 E-value=10 Score=39.49 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=13.3
Q ss_pred CCCccCCchhhcchh
Q 011872 63 DHCSRCGLCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~ 77 (475)
..|..||+|.++||.
T Consensus 152 ~~Ci~CG~C~s~CP~ 166 (329)
T PRK12577 152 GNCILCGACYSECNA 166 (329)
T ss_pred hhCcccCcccccCCC
Confidence 459999999999984
No 198
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=46.68 E-value=7 Score=43.07 Aligned_cols=15 Identities=33% Similarity=0.829 Sum_probs=13.5
Q ss_pred CCccCCchhhcchhh
Q 011872 64 HCSRCGLCDTYYIAH 78 (475)
Q Consensus 64 lCtGCGaC~~iCp~~ 78 (475)
-|..||.|+.+||.+
T Consensus 366 sCi~C~~C~d~CP~~ 380 (529)
T COG4656 366 SCIRCSLCADACPVN 380 (529)
T ss_pred ccccHHHHHHhCccc
Confidence 699999999999954
No 199
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=46.36 E-value=7.8 Score=39.44 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.2
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
+...|..||+|.++||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 346899999999999953
No 200
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=46.34 E-value=6.8 Score=41.90 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.2
Q ss_pred CCCCCCCccCCchhhcchhhhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVK 80 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~ 80 (475)
.++.+.|.+||.|...||...+
T Consensus 35 ~i~~~~C~~C~~C~~~CP~~AI 56 (411)
T TIGR03224 35 VVKADVCNGCMACVSPCPTGAI 56 (411)
T ss_pred EeCcccCcCHHHHHhhcCcccc
Confidence 4667889999999999997543
No 201
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=45.43 E-value=8.3 Score=38.72 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=14.3
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||++
T Consensus 212 ~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 212 GNCTNTGECEAVCPKG 227 (250)
T ss_pred ccCcccCccccccCCC
Confidence 4699999999999974
No 202
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=45.39 E-value=4.9 Score=40.12 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.++|+||++|...|+.
T Consensus 46 ~~iD~~kCiGC~~C~~AC~~ 65 (244)
T PRK14993 46 MLIDLRRCIGCQSCTVSCTI 65 (244)
T ss_pred EEEEHHHCCCchHHHHHhhh
Confidence 57788999999999999985
No 203
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=45.27 E-value=8.3 Score=38.46 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.5
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|..||+|.++||..
T Consensus 146 ~~~CI~Cg~C~saCP~~ 162 (244)
T PRK12385 146 FSGCINCGLCYAACPQF 162 (244)
T ss_pred HHhcCcCccccCcCcCc
Confidence 34799999999999963
No 204
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=44.68 E-value=8.2 Score=39.26 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||+.
T Consensus 206 ~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 206 WRCTYCYSCSNVCPRD 221 (279)
T ss_pred CcccCcccchhhCCCC
Confidence 5799999999999964
No 205
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=44.52 E-value=8.8 Score=37.74 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||+.
T Consensus 198 ~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 198 FRCHTIMNCVEVCPKG 213 (232)
T ss_pred ccCcCcCCcCccccCC
Confidence 5799999999999974
No 206
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=44.32 E-value=8.6 Score=40.31 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=15.2
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
.-..|..||.|.++||..
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~ 22 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVA 22 (396)
T ss_pred chhhcCCCCCCCccCCCc
Confidence 346799999999999964
No 207
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=44.19 E-value=8.5 Score=44.13 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=15.4
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
....|++||+|..+||.+
T Consensus 407 ~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 407 NLFDCIECGACAYVCPSN 424 (695)
T ss_pred ChhhccccCcccccCCCC
Confidence 446799999999999964
No 208
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=44.11 E-value=1.3e+02 Score=26.14 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=45.6
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCC----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e----~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
+...|.++.+.+.+-+++++.+ -..++..+++++.. .++..+-.-..-|.+..++..++.++++|+++..|.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~--~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vg 157 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGS--RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVG 157 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSE--HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEE
T ss_pred hhhhhhhcccccceeEEeecCC--cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEe
Confidence 4455666665654455555553 45555555555543 344443333356888999999999999998887664
No 209
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=43.86 E-value=10 Score=39.45 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.1
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
.+.+.|.+||+|..+||..
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~ 68 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVV 68 (341)
T ss_pred CCcCcCcCcCchhhhCCCC
Confidence 3567899999999999963
No 210
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=43.65 E-value=8.9 Score=38.14 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.9
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-..|..||+|.++||.
T Consensus 148 ~~~CI~Cg~C~saCP~ 163 (239)
T PRK13552 148 LDRCIECGCCVAACGT 163 (239)
T ss_pred hhhccccchhHhhCCC
Confidence 4459999999999995
No 211
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=43.45 E-value=8.9 Score=39.12 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=13.1
Q ss_pred CCccCCchhhcchh
Q 011872 64 HCSRCGLCDTYYIA 77 (475)
Q Consensus 64 lCtGCGaC~~iCp~ 77 (475)
.|..||+|.++||.
T Consensus 188 ~CI~CG~C~saCPv 201 (276)
T PLN00129 188 ECILCACCSTSCPS 201 (276)
T ss_pred hCccccccccccCC
Confidence 69999999999994
No 212
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=43.38 E-value=9.1 Score=39.16 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
|...++.+.|.|||.|..+||.+
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFN 139 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCC
Confidence 33457889999999999999964
No 213
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=43.15 E-value=10 Score=45.91 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCCCCccchHHHHHHHhhhCCCCch---hhhh---hhhhhhHhHHHHHHh
Q 011872 397 SQPAPKFVGNLIAFFINLVGPKGLE---FARY---SLDYHTIRNYLHVNR 440 (475)
Q Consensus 397 ~~~~P~~~~~~~~~~~~~~gpkgle---far~---~~~~~~~~~~~~~~~ 440 (475)
.+..-.|....+..|....+-||-- |++. +.|=.+|..|.-+-.
T Consensus 1055 K~~~g~w~~~~~~~la~~k~lRgt~~d~fg~~~err~er~li~~y~~~~~ 1104 (1165)
T PRK09193 1055 KRAFGPWMMPAFRLLAKLKGLRGTALDPFGYTEERRTERALIAEYEALVD 1104 (1165)
T ss_pred hhcCCchHHHHHHHHHhcccccCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888887 7765 666666666655433
No 214
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=42.79 E-value=1.1e+02 Score=28.24 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=41.3
Q ss_pred CchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 201 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 201 ~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
.+.+.|+++.+.|.+-+.+++.++.- -+..+.+.++... . +-..-|.++.+...++.++.+++++..|
T Consensus 47 gv~e~L~~Lk~~g~~l~I~Sn~~~~~-~~~~~~~~~gl~~--~---~~~~KP~p~~~~~~l~~~~~~~~~~l~I 114 (170)
T TIGR01668 47 ALRDWIEELKAAGRKLLIVSNNAGEQ-RAKAVEKALGIPV--L---PHAVKPPGCAFRRAHPEMGLTSEQVAVV 114 (170)
T ss_pred hHHHHHHHHHHcCCEEEEEeCCchHH-HHHHHHHHcCCEE--E---cCCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence 45566777776654445555666432 2333333444321 1 2245889999999999988877776655
No 215
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=42.56 E-value=11 Score=37.15 Aligned_cols=20 Identities=20% Similarity=0.615 Sum_probs=16.5
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
+.....|.+||.|..+||..
T Consensus 186 ~~~~~~C~~Cg~Cv~vCP~g 205 (234)
T PRK07569 186 WGTSETCTSCGKCVQACPTG 205 (234)
T ss_pred ccccccccchHHHHHhCCCC
Confidence 33456899999999999974
No 216
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=42.38 E-value=9.6 Score=38.32 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.9
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-..|..||+|.++||.
T Consensus 141 ~~~CI~CG~C~s~CPv 156 (251)
T PRK12386 141 FRKCIECFLCQNVCHV 156 (251)
T ss_pred hhhcccCCcccCcCCc
Confidence 4459999999999994
No 217
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=42.27 E-value=7.1 Score=38.51 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|.+||.|...||..
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~ 218 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRA 218 (228)
T ss_pred EEEChhhccCHHHHHHHcCCC
Confidence 456778999999999999974
No 218
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=41.86 E-value=9.2 Score=40.83 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.7
Q ss_pred CCCCCccCCchhhcchh
Q 011872 61 AKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~ 77 (475)
--++|.+||.|...||.
T Consensus 65 ~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 65 LANLCHNCGACLHACQY 81 (389)
T ss_pred HHHhCcCcccccccCcC
Confidence 35589999999999995
No 219
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=41.20 E-value=10 Score=42.40 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCCCCCCCccCCchhhcchhh-hhhhhhcC-----------------CCCcccccccCcccc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH-VKDACAFL-----------------GDGMSRIEGLETVVH 101 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~-~~~a~~f~-----------------~~G~~~c~~vCp~~~ 101 (475)
...+.++|.-||.|+.+|-.- ...++.|. .+.|+.|..+||.--
T Consensus 137 i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GA 198 (603)
T TIGR01973 137 IKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGA 198 (603)
T ss_pred eEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCccc
Confidence 345789999999999999421 01122221 113678999999743
No 220
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=41.12 E-value=17 Score=42.52 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.9
Q ss_pred CCCCccCCchhhcchhhhh
Q 011872 62 KDHCSRCGLCDTYYIAHVK 80 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~ 80 (475)
...|..||.|.++||....
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL 221 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGAL 221 (819)
T ss_pred cccccccCcHHHhCCCCcc
Confidence 4679999999999997543
No 221
>PRK09898 hypothetical protein; Provisional
Probab=40.91 E-value=11 Score=36.32 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=28.6
Q ss_pred CCCCCCCCccCCchhhcchhhhhhhhhcCC--------CCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG--------DGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a~~f~~--------~G~~~c~~vCp~ 99 (475)
..++.+.|.+||.|..+||.. ++.++. .+|+.|.+.||.
T Consensus 149 v~vd~~~CigC~~C~~aCP~~---ai~~~~~~~~~~kC~~Cg~Cv~~CP~ 195 (208)
T PRK09898 149 ITVDHKRCIGCSACTTACPWM---MATVNTESKKSSKCVLCGECANACPT 195 (208)
T ss_pred EEeccccCCCcCcccccCCCC---CCEecCCCCcCCcCcChHHHHHhCCc
Confidence 456788999999999999964 233332 146778889985
No 222
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=40.85 E-value=11 Score=39.90 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=15.1
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|+.||+|..+||..
T Consensus 72 ~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 72 LDRCLTCRNCETTCPSG 88 (407)
T ss_pred cccCccccchhhhCCCC
Confidence 46899999999999964
No 223
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=40.63 E-value=10 Score=42.40 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.7
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++. .|.+||.|..+||.+
T Consensus 575 ~i~~-~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 575 VIDP-LCTGCGVCAQICPFD 593 (595)
T ss_pred eeCC-CCcCHHHHHhhCccc
Confidence 4445 799999999999964
No 224
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=40.51 E-value=11 Score=45.49 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=32.3
Q ss_pred CCCCccchHHHHHHHhhhCCCCch---hhh---hhhhhhhHhHHHHHHhh
Q 011872 398 QPAPKFVGNLIAFFINLVGPKGLE---FAR---YSLDYHTIRNYLHVNRA 441 (475)
Q Consensus 398 ~~~P~~~~~~~~~~~~~~gpkgle---far---~~~~~~~~~~~~~~~~~ 441 (475)
+..=.|....+..|....+-||-- |++ ++.|=.+|..|.-+-..
T Consensus 1079 ~~~g~w~~~~~~~La~~k~lRgt~~D~Fg~~~eRr~er~li~~y~~~~~~ 1128 (1186)
T PRK13029 1079 VRYGPWMLPAFRVLARLKGLRGTAFDVFGYTEERRAERALIAEYRALLDE 1128 (1186)
T ss_pred eecCchHHHHHHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888888887 777 66777777777655433
No 225
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=40.22 E-value=9.1 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|++||.|..+||.+
T Consensus 536 ~~i~~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 536 YHFDYDKCTGCHICADVCPCG 556 (564)
T ss_pred EEEecccCcChhHHHhhcCcC
Confidence 346778999999999999974
No 226
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=39.73 E-value=12 Score=39.19 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
|...++.+.|.|||.|..+||.+
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~g 158 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPFN 158 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCcc
Confidence 34466788999999999999964
No 227
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=39.62 E-value=11 Score=37.65 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.3
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||++
T Consensus 209 ~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 209 ADCGNAQNCVRVCPKG 224 (249)
T ss_pred eCCcCcCcccccCCCC
Confidence 5699999999999974
No 228
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=39.19 E-value=11 Score=36.93 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.1
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-..|..||.|.++||.
T Consensus 140 ~~~Ci~Cg~C~~~CP~ 155 (232)
T PRK05950 140 LYECILCACCSTSCPS 155 (232)
T ss_pred HHhccccccccccCCc
Confidence 3579999999999995
No 229
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=38.65 E-value=11 Score=40.86 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||+|..+||..
T Consensus 343 ~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 343 YLSSLCGACREVCPVK 358 (432)
T ss_pred ccchhhhhhhccCCCC
Confidence 5799999999999974
No 230
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=38.16 E-value=14 Score=43.32 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.9
Q ss_pred CCCCCCCCccCCchhhcch
Q 011872 58 TYPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp 76 (475)
...+.++|..||.|+.+|+
T Consensus 136 I~~D~~rCI~C~RCVr~C~ 154 (819)
T PRK08493 136 INYDPSLCIVCERCVTVCK 154 (819)
T ss_pred EEechhhcccccHHHhhCc
Confidence 4557899999999999998
No 231
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=38.01 E-value=12 Score=37.25 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.3
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||++
T Consensus 203 ~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 203 WSCTFVGYCSEVCPKH 218 (244)
T ss_pred hhCcCcccccccCCCC
Confidence 3799999999999974
No 232
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=37.85 E-value=12 Score=43.51 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=16.1
Q ss_pred CCCCCCCCccCCchhhcch
Q 011872 58 TYPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp 76 (475)
...+.++|.-||-|+.+|-
T Consensus 145 i~~d~~rCI~C~rCvr~c~ 163 (797)
T PRK07860 145 VLLDRERCVLCARCTRFSD 163 (797)
T ss_pred eeecccccccCcHHHHHHH
Confidence 3457889999999999995
No 233
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=37.78 E-value=12 Score=35.51 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=16.8
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
++-..|.=||.|...||.+
T Consensus 147 IDmtkCIyCG~CqEaCPvd 165 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPVD 165 (212)
T ss_pred ccceeeeeecchhhhCCcc
Confidence 5678899999999999974
No 234
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=37.40 E-value=13 Score=42.97 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCCCCCCccCCchhhcch
Q 011872 59 YPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp 76 (475)
..+.+.|.-||.|+.+|-
T Consensus 140 ~~d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 140 STEMTRCIHCTRCVRFGQ 157 (776)
T ss_pred eecccccccCcHHHHHHH
Confidence 446888999999999995
No 235
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=37.26 E-value=15 Score=39.60 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.3
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
....|++||.|..+||.+
T Consensus 400 ~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 400 NLMDCIECGCCSYVCPSN 417 (435)
T ss_pred CCCcCCcCCCcccccCCC
Confidence 446799999999999964
No 236
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=36.99 E-value=13 Score=36.97 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||+.
T Consensus 201 ~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 201 FRCRTIMNCVDVCPKG 216 (235)
T ss_pred ccccCcchhccccCCC
Confidence 4799999999999974
No 237
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=36.89 E-value=13 Score=38.70 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||++
T Consensus 209 w~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 209 WGCTRCYYCNSVCPME 224 (329)
T ss_pred ccCcChhhhhhhCCCC
Confidence 4799999999999974
No 238
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=36.74 E-value=18 Score=37.22 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCCCCCccCCchhhcchhh-hhhhhhcCC------------------CCcccccccCccccCCCCC
Q 011872 59 YPAKDHCSRCGLCDTYYIAH-VKDACAFLG------------------DGMSRIEGLETVVHGRGRR 106 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~-~~~a~~f~~------------------~G~~~c~~vCp~~~~r~~~ 106 (475)
..+.++|..||-|+.+|... ...++.|.. .|+..|..+||.--...++
T Consensus 208 ~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d 274 (297)
T PTZ00305 208 RVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGD 274 (297)
T ss_pred eecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCC
Confidence 34578999999999999631 111222221 1344688999975544443
No 239
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=36.72 E-value=14 Score=38.76 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=15.7
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
.-+.|.+||.|...||.+
T Consensus 52 ~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 52 SLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCcCcCcCccCcccCCC
Confidence 457899999999999974
No 240
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=36.53 E-value=12 Score=39.80 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.6
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
-++|..||.|...||.
T Consensus 47 a~lChnC~~C~~~CPy 62 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQY 62 (372)
T ss_pred HHHCcCcccccccCcC
Confidence 5899999999999984
No 241
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=36.50 E-value=13 Score=38.64 Aligned_cols=17 Identities=29% Similarity=0.806 Sum_probs=14.8
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-+.|++||.|.++||..
T Consensus 8 ~~~Cv~Cg~C~~~CP~~ 24 (388)
T COG0247 8 LDKCVHCGFCTNVCPSY 24 (388)
T ss_pred HHhcCCCCcccCcCCCc
Confidence 46799999999999965
No 242
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=36.22 E-value=11 Score=40.96 Aligned_cols=24 Identities=21% Similarity=0.649 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCccCCchhhcchh
Q 011872 53 IPPGGTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 53 ~~~~~~~~~~~lCtGCGaC~~iCp~ 77 (475)
+.|+ ..+...+|.|||.|+-.||-
T Consensus 41 V~~~-~~ise~lCigcgicvkkcpf 64 (592)
T KOG0063|consen 41 VTPT-AFISEELCIGCGICVKKCPF 64 (592)
T ss_pred EcCc-chhhHhhhccccceeeccCc
Confidence 3444 47889999999999999995
No 243
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=35.17 E-value=14 Score=44.21 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=13.6
Q ss_pred CCccCCchhhcchhh
Q 011872 64 HCSRCGLCDTYYIAH 78 (475)
Q Consensus 64 lCtGCGaC~~iCp~~ 78 (475)
.|.+||.|..+||..
T Consensus 922 ~C~~CG~C~~vCP~~ 936 (1012)
T TIGR03315 922 MCNECGNCATFCPYD 936 (1012)
T ss_pred cccccchHHHhCCCC
Confidence 499999999999974
No 244
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=34.96 E-value=67 Score=33.47 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred eeEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCcc
Q 011872 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTL 199 (475)
Q Consensus 120 ~~y~a~s~d~r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~ 199 (475)
.+|.+.+.+- .|+| ...+..+|+++|.||.+|+++ +. =.+|+.++-|.+|.+
T Consensus 56 ~ifL~~tg~m----vs~G-lr~ii~~Li~~~~VD~iVtTg----------an-------------i~hD~~~~lg~~~y~ 107 (312)
T PRK01221 56 LRFLSFTANL----VSTG-LRGLIADLIKRGLFNVVITTC----------GT-------------LDHDIARSFGGVYYK 107 (312)
T ss_pred eEEEEecchh----HHHH-HHHHHHHHHHcCCeeEEEeCC----------Cc-------------hHHHHHHHcCCCeEe
Confidence 4455555432 3556 679999999999999999876 22 136899998886665
Q ss_pred cCchHHHHHHHHcCCCEEEEEecc
Q 011872 200 SPNLNTLALVEAAGVKRLLFCGVG 223 (475)
Q Consensus 200 S~~l~~l~ev~~~g~kkVlfvGtP 223 (475)
-.....=.+++++|..|+.=+-.|
T Consensus 108 G~~~~dd~~Lr~~GinRIgdv~ip 131 (312)
T PRK01221 108 GSFDIDDAMLKDLGIHRLGNVLIP 131 (312)
T ss_pred cCCCCChHHHHHcCCCcceeeccC
Confidence 332111123456667777777777
No 245
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=34.91 E-value=15 Score=39.35 Aligned_cols=13 Identities=54% Similarity=0.923 Sum_probs=7.2
Q ss_pred HHHHHHHHhCCCC
Q 011872 256 GLDKFLKAASSEP 268 (475)
Q Consensus 256 ~~~~~L~~~~~~~ 268 (475)
++++|++.++.+|
T Consensus 358 G~~~f~~~i~~~~ 370 (402)
T TIGR02064 358 GLQKFLEVIGIEP 370 (402)
T ss_pred CHHHHHHHHCCCC
Confidence 4456666666543
No 246
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=34.28 E-value=3.7e+02 Score=24.71 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=45.3
Q ss_pred CchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCC----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 201 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 201 ~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e----~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
.+...|..+.+.| -+++++ |-+...-++..++.++.. .+++-+-.=..-|.++.+...++.++..|+++..+.
T Consensus 96 ~~~~~L~~L~~~g-~~~~i~-Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vg 172 (198)
T TIGR01428 96 DVPAGLRALKERG-YRLAIL-SNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVA 172 (198)
T ss_pred CHHHHHHHHHHCC-CeEEEE-eCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEe
Confidence 3555666666554 344333 333445555555555643 344444333457899999999999999888887764
No 247
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=34.14 E-value=16 Score=38.40 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=15.9
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
.-+.|+.||+|...||.+
T Consensus 50 ~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSD 67 (397)
T ss_pred ccccCcCcCccchhcCCC
Confidence 467899999999999964
No 248
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=33.39 E-value=16 Score=39.69 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.3
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
.-..|..||.|.+.||..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~ 148 (486)
T PRK06259 131 KLRGCIECLSCVSTCPAR 148 (486)
T ss_pred CchhcccCccccccCCCC
Confidence 456799999999999954
No 249
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=32.66 E-value=14 Score=38.48 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCCCCCCCCccCCchhhcchh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~ 77 (475)
..+++.+.|.+||-|...||.
T Consensus 195 ~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 195 KLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred eEEEehhhccCccHHhhhCCh
Confidence 457888999999999999994
No 250
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=32.31 E-value=14 Score=42.92 Aligned_cols=17 Identities=24% Similarity=0.778 Sum_probs=15.0
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|++||.|..+||.+
T Consensus 436 ~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 436 EEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhhhhhHHhccCCCC
Confidence 46899999999999974
No 251
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=32.03 E-value=13 Score=42.01 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=17.2
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.++|+||++|..+|+.
T Consensus 5 i~~d~~~C~gC~~C~~aC~~ 24 (654)
T PRK12769 5 IMANSQQCLGCHACEIACVM 24 (654)
T ss_pred EEEChHhCcChhHHHHHhhh
Confidence 35678899999999999984
No 252
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=31.82 E-value=20 Score=36.13 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|+.||.|..+||++
T Consensus 199 l~~C~~C~~C~~vCPkg 215 (251)
T PRK12386 199 LGYCNITKCCTEVCPEH 215 (251)
T ss_pred cccCcCCCCcCCcCCCC
Confidence 45699999999999975
No 253
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=31.62 E-value=18 Score=36.00 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|+.||.|..+||+.
T Consensus 206 ~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 206 FGCMSLLGCEDNCPKD 221 (239)
T ss_pred CCCcCcCccchhCCCC
Confidence 5799999999999974
No 254
>PRK13984 putative oxidoreductase; Provisional
Probab=31.48 E-value=18 Score=40.35 Aligned_cols=16 Identities=38% Similarity=0.978 Sum_probs=14.1
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|++||.|...||.+
T Consensus 185 ~~C~~Cg~C~~~CP~~ 200 (604)
T PRK13984 185 ARCVECGICTDTCPAH 200 (604)
T ss_pred hhhcCCCcccccCCCC
Confidence 4699999999999965
No 255
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=31.19 E-value=24 Score=39.77 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=28.0
Q ss_pred CCCCCCCccCCc--hhhcchhhhhh----hhhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSRCGL--CDTYYIAHVKD----ACAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGa--C~~iCp~~~~~----a~~f~~~---G~~~c~~vCp~ 99 (475)
......|.+|+. |..+||..... ...++.+ ||..|.++||.
T Consensus 50 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~v~~d~~~C~gC~~C~~~CP~ 99 (639)
T PRK12809 50 AANPVACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPF 99 (639)
T ss_pred CccCCCCcCcCChhHHhhCCcCceeccccceecChhhCcchhhHhhhcCC
Confidence 456788999996 99999964221 1112222 57889999995
No 256
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=30.70 E-value=19 Score=37.87 Aligned_cols=15 Identities=27% Similarity=0.755 Sum_probs=13.7
Q ss_pred CCCccCCchhhcchh
Q 011872 63 DHCSRCGLCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~ 77 (475)
..|.+||+|..+||.
T Consensus 226 ~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 226 SRCIACGRCNFVCPT 240 (344)
T ss_pred hhCccCccccccCCc
Confidence 479999999999996
No 257
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=30.68 E-value=15 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=15.2
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|.|||-|.++||++
T Consensus 437 ~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 437 HDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHHhhhhhhhhhhCccc
Confidence 56799999999999975
No 258
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=30.36 E-value=2.6e+02 Score=25.86 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=43.6
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+...|..+.+.|.+-.+++..+.++ +...+.++. +.++.-+-.-..-|+++.+...++.++.+|+++..|
T Consensus 110 ~~~~l~~L~~~g~~~~i~Sn~~~~~---~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 110 AIKLLKDLRERGLILGVISNFDSRL---RGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhH---HHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 4555666666654445555555443 333344453 344444444446799999999999999888887766
No 259
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=30.20 E-value=17 Score=42.20 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=15.0
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|++||.|..+||.+
T Consensus 441 ~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 441 YDKCIGCGRCEQVCPKN 457 (781)
T ss_pred hhhccchhHHhhhCCCC
Confidence 46899999999999974
No 260
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=30.01 E-value=22 Score=40.79 Aligned_cols=17 Identities=18% Similarity=0.561 Sum_probs=14.7
Q ss_pred CCCCCCccCCchhhcch
Q 011872 60 PAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp 76 (475)
.+.++|..||-|+..|-
T Consensus 142 ~~~~rCI~C~rCvr~c~ 158 (687)
T PRK09130 142 TVMTRCIHCTRCVRFAT 158 (687)
T ss_pred EecccCCcccHHHHHHH
Confidence 45688999999999994
No 261
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=29.39 E-value=3e+02 Score=25.72 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=43.7
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCC----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e----~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
+.+.|+.+.+.| .++++ -|-.....++...+.++.+ .+++-+-.-..-|+++.+...++.++.+++++..|.
T Consensus 99 ~~~~L~~L~~~g-~~~~i-~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ig 174 (221)
T TIGR02253 99 VRDTLMELRESG-YRLGI-ITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVG 174 (221)
T ss_pred HHHHHHHHHHCC-CEEEE-EeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEEC
Confidence 445566666554 44333 3333333444444445543 344444444567899999999999998888877764
No 262
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=29.09 E-value=16 Score=35.65 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.2
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+++.+.|+||.+|...|-..
T Consensus 13 ~~~D~~rCiGC~aC~~AC~~~ 33 (203)
T COG0437 13 FVIDSSRCIGCKACVVACKEE 33 (203)
T ss_pred EEEecccccCcHHHHHHHHHh
Confidence 578899999999999999643
No 263
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.96 E-value=3.9e+02 Score=22.91 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=44.4
Q ss_pred CchHHHHHHHHcCCCEEEEEecc-----hH-HHHHHHHHHhcCCCceEEEcccCC--CCCCHHHHHHHHHHh-CCCCCce
Q 011872 201 PNLNTLALVEAAGVKRLLFCGVG-----CQ-VQALRSVEHHLNLEKLYVLGTNCV--DNGTREGLDKFLKAA-SSEPETV 271 (475)
Q Consensus 201 ~~l~~l~ev~~~g~kkVlfvGtP-----CQ-I~ALr~l~~~l~~e~Ly~Igl~C~--G~~S~~~~~~~L~~~-~~~~~~V 271 (475)
.+.+.++.+.+.|.+-+++++.+ .. -..++.+.++++....+. +.|+ .-|.++.++..++.+ +.+++++
T Consensus 29 ~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 106 (132)
T TIGR01662 29 EVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL--YACPHCRKPKPGMFLEALKRFNEIDPEES 106 (132)
T ss_pred CHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE--EECCCCCCCChHHHHHHHHHcCCCChhhe
Confidence 35556666666654444444544 11 344555666666542222 2343 468889999999999 5888888
Q ss_pred EEEE
Q 011872 272 LHYE 275 (475)
Q Consensus 272 ~~i~ 275 (475)
..+.
T Consensus 107 v~IG 110 (132)
T TIGR01662 107 VYVG 110 (132)
T ss_pred EEEc
Confidence 7764
No 264
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=27.83 E-value=20 Score=39.58 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=21.6
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCccCCchhhcchhh
Q 011872 42 LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..-.|+.+..-...-. .-.--.|..||+|..+||.+
T Consensus 384 ~ql~~~a~~~~~~e~~-~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 384 QQLYWFAKGEQHDEEE-EHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred HHhhHHhhhhhhhHHH-HHHhhhhhhhCcchhcCCCC
Confidence 3445666653222221 11234599999999999964
No 265
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=27.57 E-value=23 Score=37.11 Aligned_cols=16 Identities=31% Similarity=0.816 Sum_probs=14.1
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
...|.+||+|..+||.
T Consensus 219 ~~rCi~C~~C~~~CPt 234 (334)
T TIGR02910 219 DSRCIACGRCNTVCPT 234 (334)
T ss_pred HhhCCcCccccccCCc
Confidence 3579999999999995
No 266
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=27.30 E-value=23 Score=38.42 Aligned_cols=16 Identities=31% Similarity=0.656 Sum_probs=13.9
Q ss_pred CCCCccCCchhhcchh
Q 011872 62 KDHCSRCGLCDTYYIA 77 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~ 77 (475)
.-.|+-||+|..+||.
T Consensus 357 ~~~c~lcg~C~evCPv 372 (459)
T COG1139 357 PYACSLCGACTEVCPV 372 (459)
T ss_pred chhhccccCCCCcCCC
Confidence 3469999999999995
No 267
>PRK13795 hypothetical protein; Provisional
Probab=27.24 E-value=22 Score=40.33 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.0
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|.+||.|..+||..
T Consensus 608 ~id~~~C~~Cg~C~~aCP~~ 627 (636)
T PRK13795 608 SVDEEKCIHCGKCTEVCPVV 627 (636)
T ss_pred EechhhcCChhHHHhhcCCC
Confidence 45668899999999999963
No 268
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=27.15 E-value=3.5e+02 Score=25.21 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCCEEEEEecch----H---HHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHh
Q 011872 213 GVKRLLFCGVGC----Q---VQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAA 264 (475)
Q Consensus 213 g~kkVlfvGtPC----Q---I~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~~~~L~~~ 264 (475)
.+|+|+++||-- . -..++++...+..++.++=.+.|.|-.++...++|-+.+
T Consensus 66 ~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~lg~f~CqGk~~~~~~e~~~~~~ 124 (160)
T PF12641_consen 66 KGKKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEILGTFMCQGKMDPKVIEKYKKML 124 (160)
T ss_pred cCCeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeecceEEeCCcCCHHHHHHHHhcc
Confidence 369999999953 2 233444444455568899999999999999998877753
No 269
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=26.97 E-value=5.8e+02 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=13.8
Q ss_pred HHHHH-HHHHHHcCCeeEEEEEE
Q 011872 138 IVTTI-AIEMLKTGMVEAVVCVQ 159 (475)
Q Consensus 138 i~T~L-a~~lLe~G~VDgVV~~~ 159 (475)
.++++ |++++++++- -|+++-
T Consensus 15 tiaalll~~l~~~~~~-~VLvVD 36 (255)
T COG3640 15 TIAALLLKRLLSKGGY-NVLVVD 36 (255)
T ss_pred HHHHHHHHHHHhcCCc-eEEEEe
Confidence 45555 9999999863 345544
No 270
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=26.85 E-value=2.5e+02 Score=25.09 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=41.5
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~----Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
+...|+.+.+.|.+-.++++.+=.. ..+..+++.+. ++.-+-.=.+-|++..++..++.++.+|+++..++
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vg 164 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVD 164 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEc
Confidence 4555666666654455556666544 23322345432 22211111456888999999999998888776664
No 271
>PRK06769 hypothetical protein; Validated
Probab=25.95 E-value=3.2e+02 Score=25.26 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=44.7
Q ss_pred chHHHHHHHHcCCCEEEEEecchH------HHHHHHHHHhcCCCceEEEcccCC-----CCCCHHHHHHHHHHhCCCCCc
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQ------VQALRSVEHHLNLEKLYVLGTNCV-----DNGTREGLDKFLKAASSEPET 270 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQ------I~ALr~l~~~l~~e~Ly~Igl~C~-----G~~S~~~~~~~L~~~~~~~~~ 270 (475)
+.+.|+.+.+.|.+-..++..+.. +..+...++.++.+..+.....|. .-|.++.+.+.++.++.+|++
T Consensus 33 v~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 112 (173)
T PRK06769 33 TKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQ 112 (173)
T ss_pred HHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 455666666665444455555431 122333334456666544333353 478999999999999988888
Q ss_pred eEEEE
Q 011872 271 VLHYE 275 (475)
Q Consensus 271 V~~i~ 275 (475)
...|.
T Consensus 113 ~i~IG 117 (173)
T PRK06769 113 CAVIG 117 (173)
T ss_pred eEEEc
Confidence 77765
No 272
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=1.3e+02 Score=31.36 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=46.5
Q ss_pred eEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCccc
Q 011872 121 LLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS 200 (475)
Q Consensus 121 ~y~a~s~d~r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~S 200 (475)
+|.+.+.+ -.|+|+ ..+..+|+++|.||.+|+++ +.- .+|+.++-|-+|..-
T Consensus 57 vfl~~tg~----~vssGl-R~iia~LIr~~~idvvVTTg----------g~l-------------~hDi~~~lg~~~~~G 108 (318)
T COG1899 57 VFLGLTGN----LVSSGL-REIIADLIRNGLIDVVVTTG----------GNL-------------DHDIIKALGGPHYCG 108 (318)
T ss_pred EEEecccc----ccchhH-HHHHHHHHHcCCeEEEEecC----------Cch-------------hHHHHHHcCCCeecc
Confidence 45555543 357787 89999999999999998876 221 266777777555433
Q ss_pred C-chHHHHHHHHcCCCEEEEEecchHH
Q 011872 201 P-NLNTLALVEAAGVKRLLFCGVGCQV 226 (475)
Q Consensus 201 ~-~l~~l~ev~~~g~kkVlfvGtPCQI 226 (475)
+ -++.- ++++.|..|+.=|=+|=+-
T Consensus 109 ~~~~dD~-~Lr~~gi~RIgnv~vp~e~ 134 (318)
T COG1899 109 SFEVDDV-ELREEGINRIGNVFVPNEE 134 (318)
T ss_pred CcCCCHH-HHHHhccccccceecChHH
Confidence 2 22111 2334455566555555443
No 273
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=25.53 E-value=25 Score=37.44 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=16.5
Q ss_pred CCCCCccCCchhhcchhhhh
Q 011872 61 AKDHCSRCGLCDTYYIAHVK 80 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~~~ 80 (475)
....|++||-|...||.|..
T Consensus 349 ~as~CieCgqCl~~CPq~l~ 368 (391)
T COG1453 349 KASDCIECGQCLEKCPQHLD 368 (391)
T ss_pred cccccchhhhhhhcCCCcCc
Confidence 35679999999999998643
No 274
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=25.26 E-value=27 Score=35.69 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=15.5
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
.-..|+.||.|..+||+.
T Consensus 242 gl~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKG 259 (276)
T ss_pred CCCcCcChhhccccCCCC
Confidence 347799999999999974
No 275
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=25.13 E-value=21 Score=41.18 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=15.2
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
...|++||.|..+||.+
T Consensus 402 ~~~Ct~CG~C~evCP~g 418 (731)
T cd01916 402 FDQCVGCGRCEQECPKE 418 (731)
T ss_pred HhhhhhhhHHhhhCCCC
Confidence 47899999999999974
No 276
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=25.04 E-value=2e+02 Score=27.16 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=44.0
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEEEcccC-----CCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNC-----VDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C-----~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
+.+.|..+.+.| .+++++ +.+....++.+.++++.+.++-. ++| ++-|.++.++..++.++..|+++..|.
T Consensus 97 ~~~~l~~l~~~g-~~~~i~-S~~~~~~~~~~l~~~~l~~~f~~-~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ig 172 (222)
T PRK10826 97 VREALALCKAQG-LKIGLA-SASPLHMLEAVLTMFDLRDYFDA-LASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALE 172 (222)
T ss_pred HHHHHHHHHHCC-CeEEEE-eCCcHHHHHHHHHhCcchhcccE-EEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEc
Confidence 455565565564 444443 33444555555555665544322 223 456888999999999999888887764
No 277
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=24.90 E-value=2.2e+02 Score=29.56 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=56.9
Q ss_pred eeEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCcc
Q 011872 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTL 199 (475)
Q Consensus 120 ~~y~a~s~d~r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~ 199 (475)
.+|.+.+.+. .|+|+ ..+..+|+++|.||++|+++ +. =.||+.++-|.+|.-
T Consensus 47 ~ifLt~tg~m----vsaGl-r~ii~~Li~~g~Vd~ivtTg----------an-------------l~hD~~~~~g~~~~g 98 (301)
T TIGR00321 47 TIFMGYAGNL----VPSGM-REIIAYLIQHGMIDALVTTG----------AN-------------LEHDLIEALGPTHLG 98 (301)
T ss_pred eEEEEecccc----chhhH-HHHHHHHHHcCCeeEEEeCC----------Cc-------------hHHHHHHHcCccccc
Confidence 4455555432 44555 47889999999999999876 22 136899998887775
Q ss_pred cCchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHh
Q 011872 200 SPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH 235 (475)
Q Consensus 200 S~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~ 235 (475)
+...+ =.++++.|..||.=+-.|= ..++.+++.
T Consensus 99 ~f~~d-d~~Lr~~ginRI~dv~ip~--e~y~~~E~~ 131 (301)
T TIGR00321 99 DFAVD-DKKLREEGINRIGDVFVPN--ENFEVFEEW 131 (301)
T ss_pred CCCCC-hHHHHHcCCCccceecCCH--HHHHHHHHH
Confidence 43322 1235567788888888883 666776653
No 278
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=24.28 E-value=26 Score=40.90 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.8
Q ss_pred CCCCCCCCccCCchhhcch
Q 011872 58 TYPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp 76 (475)
...+.+.|..||-|+.+|.
T Consensus 144 i~~d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 144 ISHEMNRCIACYRCVRYYK 162 (847)
T ss_pred eEecCCcCccccHHHHHHH
Confidence 3456788999999999995
No 279
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=23.57 E-value=35 Score=36.34 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=11.6
Q ss_pred CccCCchhhcchhh
Q 011872 65 CSRCGLCDTYYIAH 78 (475)
Q Consensus 65 CtGCGaC~~iCp~~ 78 (475)
||+|..|.- ||..
T Consensus 295 Ct~C~yC~P-CP~g 307 (391)
T COG1453 295 CTGCRYCLP-CPSG 307 (391)
T ss_pred CccccccCc-CCCC
Confidence 999999997 9964
No 280
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=22.93 E-value=4.1e+02 Score=24.55 Aligned_cols=71 Identities=18% Similarity=0.087 Sum_probs=43.5
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~----Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+...|+.+.++| -+++++- ......++.+.++++... ++.-+-...+-|.++.+...++.++.+|+++..|
T Consensus 90 ~~~~L~~l~~~g-~~~~i~S-~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 90 VEATLGALRAKG-LRLGLVT-NKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred HHHHHHHHHHCC-CeEEEEe-CCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 444555555554 5555543 344455666666556433 2333333445788999999999999888776655
No 281
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=22.85 E-value=4.5e+02 Score=24.36 Aligned_cols=73 Identities=15% Similarity=0.014 Sum_probs=43.0
Q ss_pred CchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 201 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 201 ~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~----Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
.....|+.+.+.| -+++++--.. -..++...+.++... ++..+-.-..-|+++.+...++.++.+++++..+.
T Consensus 79 g~~~~L~~L~~~g-~~~~i~Sn~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ig 155 (205)
T TIGR01454 79 GVPELLAELRADG-VGTAIATGKS-GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVG 155 (205)
T ss_pred CHHHHHHHHHHCC-CeEEEEeCCc-hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEc
Confidence 3555666666664 3444333333 344555555555433 33333233457889999999999988888776653
No 282
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=22.71 E-value=2.1e+02 Score=29.94 Aligned_cols=85 Identities=12% Similarity=0.226 Sum_probs=54.6
Q ss_pred eeEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCcc
Q 011872 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTL 199 (475)
Q Consensus 120 ~~y~a~s~d~r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~ 199 (475)
.+|.+.+.+- .|.|+ ..+..+|+++|.||.+|+++ +. =.||+.++-|-+|.+
T Consensus 59 ~ifL~~tg~m----vsaGl-r~ii~~Li~~~~VD~iVtTg----------an-------------iehD~~~~lg~~~y~ 110 (316)
T PRK02301 59 TKFFGLAGAM----VPAGM-RGIVSDLIRDGHIDVLVTTG----------AN-------------LTHDVIEAIGGHHHH 110 (316)
T ss_pred eEEEEcccch----hHHHH-HHHHHHHHHcCCeeEEEcCC----------Cc-------------hHHHHHHHcCCCeec
Confidence 3455554432 44555 48889999999999999876 22 136899988855554
Q ss_pred -cCchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHh
Q 011872 200 -SPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH 235 (475)
Q Consensus 200 -S~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~ 235 (475)
++..+- .+++++|..||.=+-.|= ..++.+++.
T Consensus 111 G~~~~dd-~~Lr~~ginRIgd~~ip~--e~y~~~E~~ 144 (316)
T PRK02301 111 GTAHAHD-EELRDEGIDRIYDVYLPQ--EHFADFEEF 144 (316)
T ss_pred cCCCCCH-HHHHHcCCCccceeCCCh--HHHHHHHHH
Confidence 333221 235567778888888883 666766653
No 283
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=22.23 E-value=73 Score=26.38 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=45.5
Q ss_pred cchHHHHHHHhhhCCCCchhhhhhhhhhhHhHHHHHHhhc-c--hhhhhhcCchHHHHHHHhhccCc
Q 011872 403 FVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAW-G--KKRADKHMPSYAKKIVEMYNQNG 466 (475)
Q Consensus 403 ~~~~~~~~~~~~~gpkglefar~~~~~~~~~~~~~~~~~~-~--~~~~~~~~p~~~~~~~~~y~~~~ 466 (475)
.....+..++.+.|++|...--+-+++-.-.+++++.-.- . .++. ..-++.+.+||++|+|-.
T Consensus 9 ~~D~ki~~l~~~~G~~G~~~y~~ll~~iy~~~~y~~~~~~~~~~a~~~-~~~~~~v~~II~~~~LF~ 74 (87)
T PF14297_consen 9 FSDPKIRRLMAEYGCEGYGIYWYLLEYIYKQGGYYLWWDKLFLIARKL-GVSEEYVEEIINEYGLFD 74 (87)
T ss_pred ccCHHHHHHHHHcCCchHHHHHHHHHHHHcCCCeEeeHHHHHHHHHHH-CcCHHHHHHHHHHhCCcc
Confidence 3466788999999999999888888877777766543321 0 1122 467889999999998754
No 284
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=22.14 E-value=29 Score=30.19 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=27.1
Q ss_pred CCCCCCccCC--chhhcchhhhh-----hhhhcCCCCc---ccccccCcc
Q 011872 60 PAKDHCSRCG--LCDTYYIAHVK-----DACAFLGDGM---SRIEGLETV 99 (475)
Q Consensus 60 ~~~~lCtGCG--aC~~iCp~~~~-----~a~~f~~~G~---~~c~~vCp~ 99 (475)
.+...|.-|- .|..+||+.+. ..+.|..+|| +.|.=+||.
T Consensus 30 ~~~~~~~~~~~~~l~~aCPA~~Y~~~~~g~l~~~yegClECGTCRvlc~~ 79 (99)
T COG2440 30 KDPDDCQECEDKPLIKACPAGCYKLIDDGKLRFDYEGCLECGTCRVLCPH 79 (99)
T ss_pred CCchhhhhccchhhhhcCCHHHeeECCCCcEEEeecCeeeccceeEecCC
Confidence 3466788888 99999997643 2445666674 556666764
No 285
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=21.98 E-value=36 Score=36.97 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=14.7
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|+.||.|..+||..
T Consensus 184 ~~~C~~C~~C~~~CP~g 200 (486)
T PRK06259 184 LYNCTTCGKCVEVCPKE 200 (486)
T ss_pred CcCCCCcCcccCcCCCC
Confidence 35699999999999964
No 286
>PHA00490 terminal protein
Probab=21.90 E-value=1.7e+02 Score=28.97 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=69.0
Q ss_pred EEEeChHHHHHHHHhhccceeccCCCCCCCCHHHHHHHH------------------------HhhhhhccCCCCCCCCc
Q 011872 347 ITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVK------------------------ADDNAKMGRGPSQPAPK 402 (475)
Q Consensus 347 VlVrTekG~~Ll~~~~~~le~~~~~~~g~~~~~~~~~i~------------------------~~~~~~~~~~~~~~~P~ 402 (475)
|.-+|.+.+++.+++.+.++=.|..+-|+-|..|-+.+. +++....-++..+.-|.
T Consensus 94 I~~nTKeaQrvvde~~~~~~Dke~isGGk~qGTvgqr~~llsp~~vtG~~Rp~DFdF~kVrsy~rLrtlee~m~~rs~p~ 173 (266)
T PHA00490 94 IESNTKEAQRVVDEILDRFNDKEVISGGKSQGTVGQRKELLSPPDVTGFGRPEDFDFNKVRSYERLRTLEERMKKRSQPA 173 (266)
T ss_pred HHhccHHHHHHHHHHHHHhcCcceeeCCCCCCcHhhhhhhcCCcccCCCCChhccChHHHHHHHHHHHHHHHHHhccChH
Confidence 555899999999999888877777777777776644211 11211112223366677
Q ss_pred cchHHHHHHHhhhCCCCchhhhhhhhhhhHhHHHHHHhhcchhhhhhcCchHHHHHHHhhcc
Q 011872 403 FVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQ 464 (475)
Q Consensus 403 ~~~~~~~~~~~~~gpkglefar~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~y~~ 464 (475)
|....|..|+.. |.| |+|=.+ |-+|.-... -++++.+-|+-.+.+.-.|+.
T Consensus 174 YYe~~m~qlq~N-------FI~-sVEgsF--NS~~~aDel-ve~LkkiPpDDFyElfl~~~E 224 (266)
T PHA00490 174 YYEESMRQLQDN-------FIR-SVEGSF--NSYWEADEL-VEKLKKIPPDDFYELFLIYNE 224 (266)
T ss_pred HHHHHHHHHHHH-------HHH-HHhccc--cchhhHHHH-HHHHhcCCchHHHHHHHHHhh
Confidence 777777776543 666 555333 445565666 368888888888888777753
No 287
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=21.73 E-value=31 Score=34.46 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=23.1
Q ss_pred hhhhhccccCCCCCC-CCCCCCCccCCchhhcchh
Q 011872 44 EDWRKRSKPIPPGGT-YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~~~lCtGCGaC~~iCp~ 77 (475)
..+...+..+.++.. ....+.|++|+.|..+||.
T Consensus 179 ~~CP~~vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 179 EECPRGVLELEEGKVVVEDLEDCSLCKLCERACDA 213 (259)
T ss_pred HhCCccceEccCCeeEEeChhhCcCchHHHHhCCC
Confidence 344555555555432 2356789999999999995
No 288
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=21.63 E-value=2.1e+02 Score=30.09 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=55.1
Q ss_pred eeEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhhcCCCCcc
Q 011872 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAAKGVKPTL 199 (475)
Q Consensus 120 ~~y~a~s~d~r~~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~~GSKY~~ 199 (475)
.+|.+.+.+- .|.|+= .+..+|+++|.||.+|+++ +. =.||+.++-|-+|..
T Consensus 48 ~ifL~~tg~m----vsaGlr-~~i~~Li~~g~VD~iVTTg----------an-------------i~hD~~~~lg~~~y~ 99 (329)
T PRK00805 48 TIFMGLSGAM----VPAGMR-KIIKWLIRNRYVDVLVSTG----------AN-------------IFHDIHEALGFKHYK 99 (329)
T ss_pred eEEEEeccch----HHHHHH-HHHHHHHHcCCeeEEEeCC----------Cc-------------hHHHHHHHcCCCeec
Confidence 4455555432 445554 6889999999999999876 22 136899988866655
Q ss_pred cCchHHHHHHHHcCCCEEEEEecchHHHHHHHHHHh
Q 011872 200 SPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH 235 (475)
Q Consensus 200 S~~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~ 235 (475)
......=.++++.|..||.=+-.|= ..++.+++.
T Consensus 100 g~f~~dd~~Lr~~ginRIgdv~ip~--e~y~~~E~~ 133 (329)
T PRK00805 100 GSHHVDDEELFKEGIDRIYDVFAYE--EEFRKADNL 133 (329)
T ss_pred cCCCCCHHHHHHcCCCcccccccCH--HHHHHHHHH
Confidence 3321111235566778888788883 566766653
No 289
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.84 E-value=1.8e+02 Score=27.72 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHHHHcCCeeEEEEEEeeeeecccCCCCCCCCCcceeEEEcCHHHHHhh
Q 011872 132 GAQWTGIVTTIAIEMLKTGMVEAVVCVQSLVILSYYYNSDPDDRLSPRPVLARTPEEVLAA 192 (475)
Q Consensus 132 ~ssSGGi~T~La~~lLe~G~VDgVV~~~~~~~~~~~~~~~~~d~~~~~~~la~t~eel~~~ 192 (475)
+-|||-+-.+||.+++..|.= |.++... .....+.....+-++|.+|+.+.
T Consensus 25 N~SSG~~G~~lA~~~~~~Ga~--V~li~g~--------~~~~~p~~~~~i~v~sa~em~~~ 75 (185)
T PF04127_consen 25 NRSSGKMGAALAEEAARRGAE--VTLIHGP--------SSLPPPPGVKVIRVESAEEMLEA 75 (185)
T ss_dssp ES--SHHHHHHHHHHHHTT-E--EEEEE-T--------TS----TTEEEEE-SSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCCE--EEEEecC--------ccccccccceEEEecchhhhhhh
Confidence 789999999999999999973 3333200 11112345677778888888653
No 290
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=20.44 E-value=16 Score=39.51 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=32.3
Q ss_pred hhhhhhhhhccccCCCCCCCCCCCCCccCC--chhhcchhhh
Q 011872 40 VKLREDWRKRSKPIPPGGTYPAKDHCSRCG--LCDTYYIAHV 79 (475)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~lCtGCG--aC~~iCp~~~ 79 (475)
++...+|++-..+..+....-.-..|..|+ -|...||.+.
T Consensus 17 ~~~~~~~~e~~~~~~~~~~~~~~~~c~~c~~~~C~~~CP~~~ 58 (467)
T TIGR01318 17 EERKTHFREIYCPFDPGQAQYQADRCLYCGNPYCEWKCPVHN 58 (467)
T ss_pred HHHhcChHhhcCCCCHHHHHHHHHhcccCCCccccccCCCCC
Confidence 334578999888888887666688999999 6999999763
No 291
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=20.29 E-value=1.6e+02 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.8
Q ss_pred eEEEEEEeCcEEEEEEecCcEEeeccccc
Q 011872 271 VLHYEFMQDYKVHLKHLDGHIEEVPYFCL 299 (475)
Q Consensus 271 V~~i~FR~~g~~~i~~~dG~~~~~~y~~~ 299 (475)
|+.+.+.+++.+.+++.||++..+|+..+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl~~~ 29 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDLSPL 29 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEECCCS
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEhHHh
Confidence 56788888889999999999887665543
No 292
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=20.15 E-value=4.2e+02 Score=24.79 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=41.9
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~----Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+.+.|+.+.+.|.+-..+++.+ -..++..++.++... ++..+-.-.+-|.++.+.+.++.++.+++++..|
T Consensus 87 ~~~~l~~L~~~g~~~~i~S~~~--~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 87 VYETLKTLKKQGYKLGIVTTKM--RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred HHHHHHHHHHCCCeEEEEeCCC--HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 3445555555543333344444 344555555556544 3333444446789999999999988777766655
Done!