Query 011872
Match_columns 475
No_of_seqs 263 out of 674
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgo_A Ferredoxin; allochromat 94.6 0.011 3.7E-07 46.7 1.6 20 59-78 2-21 (82)
2 1rgv_A Ferredoxin; electron tr 94.5 0.011 3.8E-07 46.4 1.4 41 59-99 2-55 (80)
3 1xer_A Ferredoxin; electron tr 94.4 0.0052 1.8E-07 50.5 -0.9 42 58-99 38-95 (103)
4 3i9v_9 NADH-quinone oxidoreduc 94.2 0.0093 3.2E-07 53.8 0.3 18 61-78 49-66 (182)
5 3eun_A Ferredoxin; electron tr 94.0 0.012 4E-07 46.7 0.6 41 59-99 2-55 (82)
6 2zvs_A Uncharacterized ferredo 93.9 0.012 4.1E-07 47.0 0.4 20 59-78 2-21 (85)
7 1rof_A Ferredoxin; electron tr 93.8 0.015 5E-07 42.5 0.7 19 59-77 4-22 (60)
8 2fdn_A Ferredoxin; electron tr 93.7 0.023 7.8E-07 41.2 1.6 38 62-99 5-49 (55)
9 7fd1_A FD1, protein (7-Fe ferr 93.6 0.015 5.2E-07 48.3 0.5 41 59-99 2-51 (106)
10 1jb0_C Photosystem I iron-sulf 93.3 0.0091 3.1E-07 46.5 -1.3 41 59-99 4-59 (80)
11 1hfe_L Protein (Fe-only hydrog 93.1 0.022 7.6E-07 59.3 1.0 43 59-101 29-80 (421)
12 1bc6_A 7-Fe ferredoxin; electr 92.8 0.027 9.1E-07 43.9 0.8 41 59-99 2-51 (77)
13 1h98_A Ferredoxin; electron tr 92.0 0.024 8.3E-07 44.3 -0.4 41 59-99 2-51 (78)
14 2c42_A Pyruvate-ferredoxin oxi 92.0 0.026 8.9E-07 66.3 -0.3 27 53-79 676-702 (1231)
15 2v2k_A Ferredoxin; iron, trans 91.4 0.044 1.5E-06 45.2 0.5 42 59-100 2-52 (105)
16 1iqz_A Ferredoxin; iron-sulfer 90.9 0.054 1.9E-06 42.6 0.5 18 59-76 5-22 (81)
17 1dax_A Ferredoxin I; electron 90.3 0.068 2.3E-06 39.8 0.6 18 59-76 5-22 (64)
18 2fdn_A Ferredoxin; electron tr 90.2 0.081 2.8E-06 38.2 0.9 21 58-78 30-50 (55)
19 1gte_A Dihydropyrimidine dehyd 90.1 0.053 1.8E-06 62.4 -0.2 42 58-99 946-998 (1025)
20 7fd1_A FD1, protein (7-Fe ferr 89.9 0.078 2.7E-06 43.9 0.8 24 56-79 30-53 (106)
21 3gyx_B Adenylylsulfate reducta 89.9 0.059 2E-06 49.0 -0.0 42 59-100 3-59 (166)
22 1bc6_A 7-Fe ferredoxin; electr 89.8 0.081 2.8E-06 41.1 0.7 21 58-78 32-52 (77)
23 1sj1_A Ferredoxin; thermostabi 89.5 0.082 2.8E-06 39.1 0.5 19 59-77 5-23 (66)
24 1jnr_B Adenylylsulfate reducta 89.5 0.065 2.2E-06 47.9 -0.0 42 59-100 4-60 (150)
25 1dwl_A Ferredoxin I; electron 89.4 0.11 3.8E-06 37.4 1.2 19 59-77 3-21 (59)
26 1h98_A Ferredoxin; electron tr 89.2 0.082 2.8E-06 41.2 0.3 22 57-78 31-52 (78)
27 1f2g_A Ferredoxin II; electron 88.6 0.15 5E-06 37.0 1.3 18 59-77 3-20 (58)
28 2v2k_A Ferredoxin; iron, trans 86.3 0.18 6.2E-06 41.4 0.7 21 58-78 32-52 (105)
29 3c8y_A Iron hydrogenase 1; dit 85.6 0.082 2.8E-06 57.1 -2.2 20 58-77 140-159 (574)
30 2bs2_B Quinol-fumarate reducta 84.9 0.26 9E-06 46.8 1.3 18 62-79 148-165 (241)
31 2wdq_B Succinate dehydrogenase 84.9 0.37 1.3E-05 45.6 2.3 20 59-78 143-162 (238)
32 1ti6_B Pyrogallol hydroxytrans 84.8 0.2 7E-06 49.1 0.4 20 58-77 92-111 (274)
33 2ivf_B Ethylbenzene dehydrogen 83.7 0.22 7.6E-06 50.8 0.1 17 61-77 147-165 (352)
34 1xer_A Ferredoxin; electron tr 83.4 0.28 9.4E-06 39.9 0.5 20 59-78 77-96 (103)
35 1kf6_B Fumarate reductase iron 83.4 0.28 9.7E-06 46.6 0.7 21 59-79 142-162 (243)
36 1q16_B Respiratory nitrate red 82.7 0.28 9.7E-06 52.4 0.4 18 249-266 432-449 (512)
37 1jb0_C Photosystem I iron-sulf 82.0 0.29 1E-05 37.6 0.2 19 60-78 42-60 (80)
38 3j16_B RLI1P; ribosome recycli 81.1 0.33 1.1E-05 52.9 0.2 23 56-78 46-68 (608)
39 1kqf_B FDH-N beta S, formate d 80.8 0.24 8.4E-06 48.9 -0.8 39 61-99 96-145 (294)
40 3i9v_9 NADH-quinone oxidoreduc 80.3 0.35 1.2E-05 43.3 0.1 19 60-78 93-111 (182)
41 3i9v_3 NADH-quinone oxidoreduc 79.1 0.46 1.6E-05 53.1 0.6 19 59-77 175-193 (783)
42 1rgv_A Ferredoxin; electron tr 78.9 0.55 1.9E-05 36.5 0.8 21 58-78 30-56 (80)
43 1dwl_A Ferredoxin I; electron 78.5 0.7 2.4E-05 33.1 1.2 19 60-78 36-54 (59)
44 2fgo_A Ferredoxin; allochromat 77.5 0.49 1.7E-05 37.0 0.1 21 58-78 30-56 (82)
45 1jnr_B Adenylylsulfate reducta 75.6 0.61 2.1E-05 41.5 0.2 20 59-78 41-60 (150)
46 3eun_A Ferredoxin; electron tr 74.2 0.51 1.8E-05 37.0 -0.6 22 57-78 29-56 (82)
47 3gyx_B Adenylylsulfate reducta 72.6 0.76 2.6E-05 41.6 0.1 19 60-78 41-59 (166)
48 2h88_B Succinate dehydrogenase 72.5 1.2 4.2E-05 42.6 1.5 20 60-79 153-172 (252)
49 1f2g_A Ferredoxin II; electron 69.8 0.77 2.6E-05 33.0 -0.5 17 62-78 37-53 (58)
50 2zvs_A Uncharacterized ferredo 69.4 1.1 3.7E-05 35.3 0.3 19 59-77 31-55 (85)
51 1rof_A Ferredoxin; electron tr 67.5 1.1 3.7E-05 32.1 -0.1 17 62-78 38-54 (60)
52 1dax_A Ferredoxin I; electron 67.2 0.56 1.9E-05 34.6 -1.7 18 61-78 40-57 (64)
53 3mm5_B Sulfite reductase, diss 67.0 0.94 3.2E-05 46.1 -0.7 11 89-99 243-253 (366)
54 2vpz_B NRFC protein; oxidoredu 66.3 1.4 4.7E-05 40.8 0.3 22 57-78 82-103 (195)
55 1h0h_B Formate dehydrogenase ( 66.2 0.73 2.5E-05 43.3 -1.6 22 57-78 100-123 (214)
56 3mm5_A Sulfite reductase, diss 65.6 1.5 5.1E-05 45.7 0.5 31 69-99 261-298 (418)
57 3or1_B Sulfite reductase beta; 65.5 1.7 5.7E-05 44.7 0.8 20 58-77 251-270 (386)
58 3vr8_B Iron-sulfur subunit of 65.4 1.5 5.3E-05 43.2 0.5 16 63-78 180-195 (282)
59 3bk7_A ABC transporter ATP-bin 65.2 1.3 4.4E-05 48.1 -0.0 20 58-77 62-81 (607)
60 3cf4_A Acetyl-COA decarboxylas 65.1 1.2 4.1E-05 50.1 -0.4 38 62-99 414-467 (807)
61 1q16_B Respiratory nitrate red 65.0 1.3 4.4E-05 47.4 -0.1 41 59-99 178-229 (512)
62 2ivf_B Ethylbenzene dehydrogen 63.9 1.4 4.7E-05 44.9 -0.2 22 57-78 176-197 (352)
63 1iqz_A Ferredoxin; iron-sulfer 63.6 0.89 3E-05 35.4 -1.3 20 59-78 45-64 (81)
64 2c42_A Pyruvate-ferredoxin oxi 62.5 1.9 6.6E-05 50.7 0.7 19 59-77 738-756 (1231)
65 1ti6_B Pyrogallol hydroxytrans 60.7 1.4 4.8E-05 43.1 -0.8 20 59-78 7-26 (274)
66 2vpz_B NRFC protein; oxidoredu 59.0 1.9 6.6E-05 39.8 -0.1 21 58-78 6-26 (195)
67 1hfe_L Protein (Fe-only hydrog 58.4 2.6 8.8E-05 43.6 0.7 18 61-78 62-79 (421)
68 2wdq_B Succinate dehydrogenase 57.9 3 0.0001 39.3 1.1 18 61-78 202-219 (238)
69 2h88_B Succinate dehydrogenase 57.2 2.9 9.8E-05 40.0 0.8 17 62-78 212-228 (252)
70 2bs2_B Quinol-fumarate reducta 56.1 2.9 9.8E-05 39.5 0.6 17 62-78 205-221 (241)
71 1kqf_B FDH-N beta S, formate d 55.9 1.9 6.4E-05 42.5 -0.8 23 56-78 124-146 (294)
72 1kf6_B Fumarate reductase iron 53.5 3.3 0.00011 39.1 0.6 18 61-78 200-217 (243)
73 3mm5_B Sulfite reductase, diss 51.2 1.4 4.8E-05 44.8 -2.6 9 69-77 214-222 (366)
74 1h0h_B Formate dehydrogenase ( 50.7 2.5 8.5E-05 39.6 -0.8 21 58-78 4-24 (214)
75 3c8y_A Iron hydrogenase 1; dit 50.3 3.9 0.00013 44.0 0.5 21 58-78 183-203 (574)
76 3m1y_A Phosphoserine phosphata 47.3 72 0.0025 27.6 8.4 71 202-274 80-164 (217)
77 3or1_B Sulfite reductase beta; 45.8 3.1 0.00011 42.7 -1.1 41 59-99 212-270 (386)
78 3or1_A Sulfite reductase alpha 44.6 3.2 0.00011 43.4 -1.2 12 256-267 387-398 (437)
79 3i9v_3 NADH-quinone oxidoreduc 44.2 6.9 0.00024 43.6 1.3 18 64-81 219-236 (783)
80 1gte_A Dihydropyrimidine dehyd 42.6 6.1 0.00021 45.3 0.6 15 63-77 984-998 (1025)
81 2gmh_A Electron transfer flavo 41.0 5.4 0.00018 42.6 -0.2 21 58-78 546-566 (584)
82 3um9_A Haloacid dehalogenase, 40.8 1.7E+02 0.0057 25.3 9.8 71 202-274 101-175 (230)
83 3l8h_A Putative haloacid dehal 40.4 1.6E+02 0.0054 24.9 9.5 74 202-275 32-125 (179)
84 3vr8_B Iron-sulfur subunit of 38.5 7.3 0.00025 38.3 0.3 17 62-78 236-252 (282)
85 3mm5_A Sulfite reductase, diss 34.6 8 0.00027 40.2 -0.1 22 56-77 277-298 (418)
86 2o2x_A Hypothetical protein; s 33.2 1.8E+02 0.006 25.8 8.9 74 202-275 61-161 (218)
87 2no4_A (S)-2-haloacid dehaloge 33.1 2E+02 0.0067 25.3 9.2 71 202-274 110-184 (240)
88 3ib6_A Uncharacterized protein 32.5 1.9E+02 0.0066 24.9 8.8 74 202-275 39-121 (189)
89 2p9j_A Hypothetical protein AQ 31.9 1.1E+02 0.0037 25.7 6.8 65 203-274 42-106 (162)
90 2pa8_D DNA-directed RNA polyme 31.8 9.8 0.00033 36.8 -0.0 16 61-76 199-214 (265)
91 2pa8_D DNA-directed RNA polyme 31.3 9 0.00031 37.0 -0.4 33 66-98 174-214 (265)
92 3s6j_A Hydrolase, haloacid deh 29.7 1.5E+02 0.005 25.6 7.5 71 202-274 96-170 (233)
93 2gmh_A Electron transfer flavo 29.0 6.8 0.00023 41.8 -1.8 41 61-101 508-567 (584)
94 2wm8_A MDP-1, magnesium-depend 27.5 2.4E+02 0.0083 24.2 8.6 72 202-275 73-144 (187)
95 3cf4_A Acetyl-COA decarboxylas 27.3 15 0.00052 41.2 0.5 17 62-78 452-468 (807)
96 3mc1_A Predicted phosphatase, 27.1 2.2E+02 0.0074 24.5 8.2 71 202-274 91-165 (226)
97 3kzx_A HAD-superfamily hydrola 26.4 3.1E+02 0.011 23.6 9.4 71 203-275 109-184 (231)
98 2pib_A Phosphorylated carbohyd 26.2 1.6E+02 0.0054 24.8 7.0 71 202-274 89-163 (216)
99 3e58_A Putative beta-phosphogl 25.9 2.2E+02 0.0075 23.8 7.8 72 202-275 94-169 (214)
100 2vdc_G Glutamate synthase [NAD 25.5 7 0.00024 40.5 -2.4 35 45-79 2-38 (456)
101 3umb_A Dehalogenase-like hydro 23.9 2.2E+02 0.0075 24.6 7.6 71 202-274 104-178 (233)
102 1g1p_A Conotoxin EVIA; three d 23.8 34 0.0012 22.3 1.5 18 58-76 13-30 (33)
103 3qnm_A Haloacid dehalogenase-l 23.4 2.1E+02 0.0073 24.6 7.4 71 202-275 112-186 (240)
104 1zrn_A L-2-haloacid dehalogena 23.3 3E+02 0.01 23.7 8.5 71 202-274 100-174 (232)
105 3sd7_A Putative phosphatase; s 23.3 3E+02 0.01 24.0 8.4 71 203-275 116-191 (240)
106 3cnh_A Hydrolase family protei 23.2 1.6E+02 0.0054 25.1 6.4 67 205-275 94-165 (200)
107 1k1e_A Deoxy-D-mannose-octulos 22.0 2E+02 0.0068 24.7 6.9 64 204-274 42-105 (180)
108 4eze_A Haloacid dehalogenase-l 20.9 1.5E+02 0.0051 28.7 6.3 71 202-274 184-268 (317)
109 1te2_A Putative phosphatase; s 20.5 3.5E+02 0.012 22.8 8.1 70 203-274 100-173 (226)
110 3ddh_A Putative haloacid dehal 20.0 1.8E+02 0.006 24.9 6.1 71 202-275 110-181 (234)
No 1
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=94.64 E-value=0.011 Score=46.73 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=17.5
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
++..+.|++||.|..+||.+
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ 21 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNG 21 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTC
T ss_pred ceeCCCCCChhhHHHHCChh
Confidence 46678999999999999964
No 2
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=94.53 E-value=0.011 Score=46.44 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCCCCCCccCCchhhcchhhhhhh----hhcCCC---Ccc------cccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFLGD---GMS------RIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a----~~f~~~---G~~------~c~~vCp~ 99 (475)
++..+.|++||.|..+||.+.+.. ..++.+ +|. .|.++||.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPA 55 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEECCSSSCEECTTTCCTTTTTCSSCHHHHHCSS
T ss_pred eEeCCCCcChhhHHHHcChhccCcCCCeeEEcchhCcCCCCcCCccHHHHhcCc
Confidence 456789999999999999643211 011111 355 78888885
No 3
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.37 E-value=0.0052 Score=50.52 Aligned_cols=42 Identities=14% Similarity=-0.082 Sum_probs=28.2
Q ss_pred CCCCCCCCccCCchhhcchhhhhhhh-------------hcCC---CCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDAC-------------AFLG---DGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a~-------------~f~~---~G~~~c~~vCp~ 99 (475)
..++.++|++||.|..+||......- .++. .+|..|..+||.
T Consensus 38 ~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 95 (103)
T 1xer_A 38 VGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPV 95 (103)
T ss_dssp EEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTT
T ss_pred EEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccc
Confidence 45677899999999999996432210 1111 146778889985
No 4
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=94.19 E-value=0.0093 Score=53.83 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.9
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
+.+.|++||.|..+||..
T Consensus 49 d~~~Ci~C~~C~~~CP~~ 66 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAY 66 (182)
T ss_dssp SCBSCCCCCHHHHHCTTC
T ss_pred CCccCcccccchhhCCcc
Confidence 467999999999999964
No 5
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=94.04 E-value=0.012 Score=46.70 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=26.9
Q ss_pred CCCCCCCccCCchhhcchhhhhhh----hhcCCC---Ccc------cccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA----CAFLGD---GMS------RIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a----~~f~~~---G~~------~c~~vCp~ 99 (475)
++..+.|.+||.|..+||.+.+.. ..++.+ +|. .|.++||.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~~~~i~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEECSSSEEECGGGCCTTTTTCSSCHHHHHCTT
T ss_pred eEeCCCCcCccchHHHCChhheEcCCCceEEchhhcCCCCCCCCccHHHHhCCc
Confidence 456789999999999999743211 011111 455 68888885
No 6
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=93.91 E-value=0.012 Score=46.97 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
++..+.|+|||.|..+||.+
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ 21 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNE 21 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTC
T ss_pred EEeCCcCcChhHHHHHCchh
Confidence 34568899999999999964
No 7
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=93.80 E-value=0.015 Score=42.49 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=16.6
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++.+.|+|||.|..+||.
T Consensus 4 ~i~~~~C~~C~~C~~~Cp~ 22 (60)
T 1rof_A 4 RVDADACIGCGVCENLCPD 22 (60)
T ss_dssp EECTTTCCSCCSSTTTCTT
T ss_pred EEchhhCCCChHHHHhCcH
Confidence 4567899999999999995
No 8
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=93.69 E-value=0.023 Score=41.23 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCCCccCCchhhcchhhhhhh----hhcCCC---CcccccccCcc
Q 011872 62 KDHCSRCGLCDTYYIAHVKDA----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~a----~~f~~~---G~~~c~~vCp~ 99 (475)
.+.|++||.|..+||.+.... ..++.+ +|+.|.++||.
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~C~~~CP~ 49 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPV 49 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCSSSCEECTTTCCCCCHHHHTCTT
T ss_pred cccCcChhhHHHHCCccccCcCCCEEEeccccCcChhChHHHccc
Confidence 678999999999999643211 111111 45678888885
No 9
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=93.57 E-value=0.015 Score=48.32 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=27.5
Q ss_pred CCCCCCCccCC--chhhcchhhhhhh----hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSRCG--LCDTYYIAHVKDA----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCG--aC~~iCp~~~~~a----~~f~~~---G~~~c~~vCp~ 99 (475)
+++.+.|++|| .|..+||.+.+.. ..++.+ ||+.|..+||.
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~~~CP~ 51 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPA 51 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCTTGGGCTT
T ss_pred eECccccCCccCcHHHHHcCccceEcCCCcEEECcccCCChhhhHHhCCC
Confidence 45678899999 9999999653211 112212 56788999995
No 10
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=93.25 E-value=0.0091 Score=46.45 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=26.9
Q ss_pred CCCCCCCccCCchhhcchhhhhhhhh------------cC---CCCcccccccCcc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDACA------------FL---GDGMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a~~------------f~---~~G~~~c~~vCp~ 99 (475)
+++.+.|++||.|..+||.+...... +. -.+|+.|..+||.
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 59 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPT 59 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCS
T ss_pred cccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCC
Confidence 34567899999999999964321100 01 1146778899996
No 11
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=93.15 E-value=0.022 Score=59.30 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=29.7
Q ss_pred CCCCCCCccCCchhhcchhhhhhh-----hhc-CC---CCcccccccCcccc
Q 011872 59 YPAKDHCSRCGLCDTYYIAHVKDA-----CAF-LG---DGMSRIEGLETVVH 101 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~~~a-----~~f-~~---~G~~~c~~vCp~~~ 101 (475)
.++.+.|++||.|..+||.+.+.. ... +. .+|+.|..+||..-
T Consensus 29 ~~d~~kCi~Cg~C~~~CP~~ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~A 80 (421)
T 1hfe_L 29 QIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENA 80 (421)
T ss_dssp EECTTTCCCCCHHHHHCTTCCCBCCTTSCCBCCCGGGCCCCCTTGGGCTTCC
T ss_pred EECcccCCCccHHHHhcCcCceecccccceeecChhhCCchhhHHHhhCcCC
Confidence 567889999999999999753221 011 11 15788999999643
No 12
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=92.82 E-value=0.027 Score=43.90 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=27.6
Q ss_pred CCCCCCCcc--CCchhhcchhhhhhh----hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSR--CGLCDTYYIAHVKDA----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtG--CGaC~~iCp~~~~~a----~~f~~~---G~~~c~~vCp~ 99 (475)
++..+.|++ ||.|..+||.+.+.. ..++.+ ||+.|..+||.
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~~~~~~~~~~C~~Cg~C~~~CP~ 51 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPV 51 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEECSSSEEECTTTCCSCCSHHHHSGG
T ss_pred EEeCccCCCCCcchhHHhcccccEEeCCCcEEECcccCcCccCCHhhcCc
Confidence 456788999 999999999753211 111111 46788899996
No 13
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=92.04 E-value=0.024 Score=44.32 Aligned_cols=41 Identities=7% Similarity=-0.104 Sum_probs=27.2
Q ss_pred CCCCCCCcc--CCchhhcchhhhhhh----hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSR--CGLCDTYYIAHVKDA----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtG--CGaC~~iCp~~~~~a----~~f~~~---G~~~c~~vCp~ 99 (475)
++..+.|+| ||.|..+||.+.+.. ..++.+ ||+.|..+||.
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~~~~~~~~~~C~~C~~C~~~CP~ 51 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPV 51 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSSSEEECTTTCCCCCTHHHHCTT
T ss_pred EEEchhCCCCCcChhhhhcCccceEcCCCEEEECcccCCcHhHHHHhCCc
Confidence 456788999 999999999643211 111222 46778899995
No 14
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=92.03 E-value=0.026 Score=66.28 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCccCCchhhcchhhh
Q 011872 53 IPPGGTYPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 53 ~~~~~~~~~~~lCtGCGaC~~iCp~~~ 79 (475)
+.......+.+.|++||.|..+||..+
T Consensus 676 i~~~~p~~d~~kCi~Cg~Cv~vCP~~A 702 (1231)
T 2c42_A 676 VAINVPQWVPENCIQCNQCAFVCPHSA 702 (1231)
T ss_dssp CCSEEEEECTTTCCCCCHHHHHCSSCC
T ss_pred CCccceEEeCccCCchhhHHHhCCccc
Confidence 333334567899999999999999753
No 15
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=91.35 E-value=0.044 Score=45.22 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=27.9
Q ss_pred CCCCCCCccC--Cchhhcchhhhhhh----hhcCCC---CcccccccCccc
Q 011872 59 YPAKDHCSRC--GLCDTYYIAHVKDA----CAFLGD---GMSRIEGLETVV 100 (475)
Q Consensus 59 ~~~~~lCtGC--GaC~~iCp~~~~~a----~~f~~~---G~~~c~~vCp~~ 100 (475)
++..+.|++| |.|..+||.+.+.. ..++.+ +|+.|..+||..
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 52 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVE 52 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCCSGGGCTTC
T ss_pred EEecccCCCCCcChhhhhcCccccCcCCCcEEEeCCcCcchhhHHHhCCcc
Confidence 4567889988 99999999743211 111122 467889999963
No 16
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=90.85 E-value=0.054 Score=42.58 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=16.5
Q ss_pred CCCCCCCccCCchhhcch
Q 011872 59 YPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp 76 (475)
+++.++|+|||.|..+||
T Consensus 5 ~vd~~~CigCg~C~~~CP 22 (81)
T 1iqz_A 5 IVDKETCIACGACGAAAP 22 (81)
T ss_dssp EECTTTCCCCSHHHHHCT
T ss_pred EEecccCcccChhhHhCc
Confidence 467899999999999999
No 17
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=90.30 E-value=0.068 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=16.3
Q ss_pred CCCCCCCccCCchhhcch
Q 011872 59 YPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp 76 (475)
.++.++|+|||.|..+||
T Consensus 5 ~id~~~C~~Cg~C~~~CP 22 (64)
T 1dax_A 5 YVDQDECIACESCVEIAP 22 (64)
T ss_dssp EECSTTCCSCCHHHHHCT
T ss_pred EEccccCCCchHHHHhCC
Confidence 467789999999999999
No 18
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=90.15 E-value=0.081 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.9
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|++||.|..+||.+
T Consensus 30 ~~~~~~~C~~C~~C~~~CP~~ 50 (55)
T 2fdn_A 30 YVIDADTCIDCGACAGVCPVD 50 (55)
T ss_dssp CEECTTTCCCCCHHHHTCTTC
T ss_pred EEeccccCcChhChHHHcccc
Confidence 356778999999999999974
No 19
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=90.09 E-value=0.053 Score=62.36 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCCCCCCccCCchhhcchhhhhhhhhcC-----------CCCcccccccCcc
Q 011872 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFL-----------GDGMSRIEGLETV 99 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~~~~a~~f~-----------~~G~~~c~~vCp~ 99 (475)
..++.+.|++||.|..+||.....++.+. ..||+.|..+||.
T Consensus 946 ~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPI 998 (1025)
T ss_dssp EEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEECTTCCCCCHHHHHCSS
T ss_pred EEEEcccCcccCHHHHhcCccccCCEEEeCCCceEEeCccCCChhHHHhhCCC
Confidence 45678999999999999995111122221 1267889999996
No 20
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=89.95 E-value=0.078 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.4
Q ss_pred CCCCCCCCCCccCCchhhcchhhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~~ 79 (475)
+...++.+.|++||.|..+||.+.
T Consensus 30 ~~~~i~~~~C~~Cg~C~~~CP~~a 53 (106)
T 7fd1_A 30 NFLVIHPDECIDCALCEPECPAQA 53 (106)
T ss_dssp SCEEECTTTCCCCCTTGGGCTTCC
T ss_pred CcEEECcccCCChhhhHHhCCChh
Confidence 344567788999999999999753
No 21
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=89.88 E-value=0.059 Score=49.02 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=28.7
Q ss_pred CCCCCCCccCC-----chhhcchhhhhhhh-----h--cC---CCCcccccccCccc
Q 011872 59 YPAKDHCSRCG-----LCDTYYIAHVKDAC-----A--FL---GDGMSRIEGLETVV 100 (475)
Q Consensus 59 ~~~~~lCtGCG-----aC~~iCp~~~~~a~-----~--f~---~~G~~~c~~vCp~~ 100 (475)
+++.+.|.||| .|..+||.+.+..- . .+ -.||..|.++||..
T Consensus 3 ~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 3 YVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQG 59 (166)
T ss_dssp EECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCSSC
T ss_pred EEcchhcCCCCCCCcchhHHhCCccccEEecCCceeEecCcccCcccChHhHhCCcc
Confidence 46788999999 99999997432100 0 11 11577899999963
No 22
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=89.76 E-value=0.081 Score=41.07 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=18.1
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|++||.|..+||.+
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~ 52 (77)
T 1bc6_A 32 YYIDPDVCIDCGACEAVCPVS 52 (77)
T ss_dssp EEECTTTCCSCCSHHHHSGGG
T ss_pred EEECcccCcCccCCHhhcCcc
Confidence 456778999999999999974
No 23
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=89.52 E-value=0.082 Score=39.12 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=16.7
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++.++|+|||.|..+||.
T Consensus 5 ~id~~~C~~C~~C~~~Cp~ 23 (66)
T 1sj1_A 5 SVDQDTCIGDAICASLCPD 23 (66)
T ss_dssp EECTTTCCCCCHHHHHCTT
T ss_pred EECcccCcCchHHHHhCCc
Confidence 4577899999999999994
No 24
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=89.52 E-value=0.065 Score=47.87 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=28.9
Q ss_pred CCCCCCCccCC-----chhhcchhhhhhh-------hhcC---CCCcccccccCccc
Q 011872 59 YPAKDHCSRCG-----LCDTYYIAHVKDA-------CAFL---GDGMSRIEGLETVV 100 (475)
Q Consensus 59 ~~~~~lCtGCG-----aC~~iCp~~~~~a-------~~f~---~~G~~~c~~vCp~~ 100 (475)
+++.+.|.||| .|..+||.+.+.. ..++ -.||+.|.++||..
T Consensus 4 ~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~ 60 (150)
T 1jnr_B 4 FVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQG 60 (150)
T ss_dssp EECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCTTC
T ss_pred EECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCcccCcCHhHHHHhCCcc
Confidence 46778999999 9999999643210 1111 12577899999963
No 25
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=89.39 E-value=0.11 Score=37.44 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.4
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++.++|+|||.|..+||.
T Consensus 3 ~i~~~~C~~C~~C~~~Cp~ 21 (59)
T 1dwl_A 3 VIDHEECIGCESCVELCPE 21 (59)
T ss_dssp EESSCCCSSCCGGGGTSTT
T ss_pred EEChhhCcChhHHHHHCCH
Confidence 3567899999999999994
No 26
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=89.17 E-value=0.082 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=18.5
Q ss_pred CCCCCCCCCccCCchhhcchhh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
...++.+.|++||.|..+||.+
T Consensus 31 ~~~~~~~~C~~C~~C~~~CP~~ 52 (78)
T 1h98_A 31 QFYIHPEECIDCGACVPACPVN 52 (78)
T ss_dssp SEEECTTTCCCCCTHHHHCTTC
T ss_pred EEEECcccCCcHhHHHHhCCcc
Confidence 3456788999999999999975
No 27
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=88.59 E-value=0.15 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++ ++|+|||.|..+||.
T Consensus 3 ~id-~~C~~C~~C~~~CP~ 20 (58)
T 1f2g_A 3 EVN-DDCMACEACVEICPD 20 (58)
T ss_dssp BCT-TTCCCCCHHHHHCTT
T ss_pred EEC-CcCccchHHHHhCCc
Confidence 466 899999999999996
No 28
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=86.27 E-value=0.18 Score=41.44 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|++||.|..+||..
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~ 52 (105)
T 2v2k_A 32 LYIHPDECVDCGACEPVCPVE 52 (105)
T ss_dssp EEECTTTCCCCCCSGGGCTTC
T ss_pred EEEeCCcCcchhhHHHhCCcc
Confidence 456778999999999999974
No 29
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=85.61 E-value=0.082 Score=57.12 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.+++.+.|++||.|..+||.
T Consensus 140 i~~d~~kCi~Cg~Cv~~CP~ 159 (574)
T 3c8y_A 140 LTVDRTKCLLCGRCVNACGK 159 (574)
T ss_dssp EEEEGGGCCCCCHHHHHHHH
T ss_pred ceeCcccCcCCCCccchhCc
Confidence 45678899999999999996
No 30
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=84.95 E-value=0.26 Score=46.83 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.4
Q ss_pred CCCCccCCchhhcchhhh
Q 011872 62 KDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~ 79 (475)
...|++||+|..+||...
T Consensus 148 ~~~Ci~Cg~C~~~CP~~~ 165 (241)
T 2bs2_B 148 LDRCIECGCCIAACGTKI 165 (241)
T ss_dssp HHTCCCCCHHHHTCHHHH
T ss_pred hhhhhccCcCcccCCCCc
Confidence 457999999999999753
No 31
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=84.89 E-value=0.37 Score=45.64 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
+.+...|++||.|..+||..
T Consensus 143 ~~~~~~Ci~Cg~C~~~CP~~ 162 (238)
T 2wdq_B 143 LDGLYECILCACCSTSCPSF 162 (238)
T ss_dssp TTTTTTCCCCCTTGGGCHHH
T ss_pred HhccccccccCCchhhCcCC
Confidence 44578899999999999964
No 32
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=84.81 E-value=0.2 Score=49.14 Aligned_cols=20 Identities=0% Similarity=-0.330 Sum_probs=11.2
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
..++.+.|.|||.|..+||.
T Consensus 92 v~id~~~CigC~~C~~~CP~ 111 (274)
T 1ti6_B 92 VLIDPEKAKGKKELLDTCPY 111 (274)
T ss_dssp EEECTTTTTTCGGGGGGCSS
T ss_pred EEechhhccchHHHHhhCcc
Confidence 34455556666666666654
No 33
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=83.68 E-value=0.22 Score=50.76 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=9.8
Q ss_pred CCCCCccCC--chhhcchh
Q 011872 61 AKDHCSRCG--LCDTYYIA 77 (475)
Q Consensus 61 ~~~lCtGCG--aC~~iCp~ 77 (475)
..+.|.+|+ .|..+||.
T Consensus 147 ~~~~C~~C~~~~Cv~~CP~ 165 (352)
T 2ivf_B 147 LARMCNHCTNPACLAACPT 165 (352)
T ss_dssp EEECCCCCSSCHHHHHCTT
T ss_pred CCCCCcCcCCccccccCCC
Confidence 345566666 56666664
No 34
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=83.39 E-value=0.28 Score=39.94 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..+.|++||.|..+||..
T Consensus 77 ~~~~~~C~~Cg~C~~~CP~~ 96 (103)
T 1xer_A 77 PVNEQACIFCMACVNVCPVA 96 (103)
T ss_dssp CTTGGGCCCCCHHHHHCTTC
T ss_pred ecCcccccChhhHHHhcccc
Confidence 35667899999999999974
No 35
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=83.38 E-value=0.28 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.2
Q ss_pred CCCCCCCccCCchhhcchhhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~~ 79 (475)
+.+...|++||.|..+||...
T Consensus 142 ~~~~~~Ci~Cg~C~~~CP~~~ 162 (243)
T 1kf6_B 142 YHQFSGCINCGLCYAACPQFG 162 (243)
T ss_dssp TGGGGCCCCCCHHHHHCHHHH
T ss_pred hhhhhhccccCccccccCCCc
Confidence 345678999999999999653
No 36
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=82.67 E-value=0.28 Score=52.39 Aligned_cols=18 Identities=6% Similarity=-0.104 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 011872 249 VDNGTREGLDKFLKAASS 266 (475)
Q Consensus 249 ~G~~S~~~~~~~L~~~~~ 266 (475)
.-+.+.+.+.+.++.+++
T Consensus 432 d~~lT~~e~~~m~r~~~i 449 (512)
T 1q16_B 432 EVGLTEAQAQEMYRYLAI 449 (512)
T ss_dssp HTTCCHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHhCc
Confidence 345566777777777664
No 37
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=82.01 E-value=0.29 Score=37.62 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=16.2
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
+..+.|++||.|..+||.+
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ 60 (80)
T 1jb0_C 42 PRTEDCVGCKRCETACPTD 60 (80)
T ss_dssp TTGGGCCCCCHHHHHCCSS
T ss_pred CCCCcCcCcCChhhhCCCC
Confidence 3457899999999999974
No 38
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.06 E-value=0.33 Score=52.87 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.0
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
+..++..++|.|||.|+..||-.
T Consensus 46 ~~~~i~~~~c~~~~~~~~~cp~~ 68 (608)
T 3j16_B 46 KIAFISEILCIGCGICVKKCPFD 68 (608)
T ss_dssp TEEEECTTTCCCCCHHHHHCSSC
T ss_pred CceEEehhhccccccccccCCcc
Confidence 34788999999999999999964
No 39
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=80.81 E-value=0.24 Score=48.93 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCCCccCC--chhhcchh-hhhhh-----hhcCCC---CcccccccCcc
Q 011872 61 AKDHCSRCG--LCDTYYIA-HVKDA-----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 61 ~~~lCtGCG--aC~~iCp~-~~~~a-----~~f~~~---G~~~c~~vCp~ 99 (475)
..+.|.+|| .|..+||. ..+.. ..++.+ ||..|...||.
T Consensus 96 ~~~~C~~C~~~~C~~~CP~~gAi~~~~~g~v~id~~~CigCg~C~~~CP~ 145 (294)
T 1kqf_B 96 RKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPF 145 (294)
T ss_dssp EEESCCCBSSCHHHHHCCSTTSEEEETTSCEEECGGGCCCCCHHHHHCTT
T ss_pred CcccCCCcCChhhhhhCCccCccccccccceEeCcccCCCcchhhhcCCC
Confidence 456788888 78888875 32210 111111 56677788875
No 40
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=80.30 E-value=0.35 Score=43.31 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
++.+.|++||+|..+||.+
T Consensus 93 ~~~~~C~~C~~C~~~CP~~ 111 (182)
T 3i9v_9 93 INMLRCIFCGLCEEACPTG 111 (182)
T ss_dssp EETTTCCCCCHHHHHCSSS
T ss_pred cCCCcCcChhChhhhCCcc
Confidence 4567899999999999974
No 41
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=79.15 E-value=0.46 Score=53.07 Aligned_cols=19 Identities=21% Similarity=0.698 Sum_probs=15.7
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
..+.++|.+||.|..+||.
T Consensus 175 ~~d~~~CI~C~~Cv~~C~~ 193 (783)
T 3i9v_3 175 ILDRERCIHCKRCVRYFEE 193 (783)
T ss_dssp EECTTTCCCCCHHHHHHHH
T ss_pred EEchhhCCCccHHHHHhhh
Confidence 3467889999999999953
No 42
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=78.94 E-value=0.55 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.9
Q ss_pred CCCCCCCCccCC------chhhcchhh
Q 011872 58 TYPAKDHCSRCG------LCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCG------aC~~iCp~~ 78 (475)
..++.+.|++|| .|..+||.+
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~ 56 (80)
T 1rgv_A 30 YVIDPTKCSECVGAFDEPQCRLVCPAD 56 (80)
T ss_dssp CEECTTTCCTTTTTCSSCHHHHHCSSC
T ss_pred eEEcchhCcCCCCcCCccHHHHhcCcc
Confidence 356778999999 999999974
No 43
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=78.46 E-value=0.7 Score=33.06 Aligned_cols=19 Identities=0% Similarity=-0.221 Sum_probs=16.5
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
++.+.|++||.|..+||.+
T Consensus 36 ~~~~~c~~C~~C~~~CP~~ 54 (59)
T 1dwl_A 36 APDSTAECAQDAIDACPVE 54 (59)
T ss_dssp CTTCCCGGGGTGGGGSTTC
T ss_pred cChhhhhHHHHHHHhCCHh
Confidence 4677899999999999974
No 44
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=77.49 E-value=0.49 Score=36.96 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=17.6
Q ss_pred CCCCCCCCccCC------chhhcchhh
Q 011872 58 TYPAKDHCSRCG------LCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCG------aC~~iCp~~ 78 (475)
..++.+.|++|| .|..+||.+
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~ 56 (82)
T 2fgo_A 30 YVIDPNLCTECVGHYDEPQCQQVCPVD 56 (82)
T ss_dssp EEECTTTCCTTTTTCSSCHHHHHCTTC
T ss_pred EEEEchhCccCCCcCCCCHhHhhCCcc
Confidence 356778999999 999999974
No 45
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=75.63 E-value=0.61 Score=41.48 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.1
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.++.+.|++||.|..+||.+
T Consensus 41 ~id~~~C~~Cg~Cv~~CP~~ 60 (150)
T 1jnr_B 41 NREPDMCWECYSCVKMCPQG 60 (150)
T ss_dssp ESCGGGCCCCCHHHHHCTTC
T ss_pred eeCcccCcCHhHHHHhCCcc
Confidence 35667899999999999974
No 46
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=74.19 E-value=0.51 Score=36.96 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.1
Q ss_pred CCCCCCCCCccCC------chhhcchhh
Q 011872 57 GTYPAKDHCSRCG------LCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCG------aC~~iCp~~ 78 (475)
...++.+.|.+|| .|..+||.+
T Consensus 29 ~~~i~~~~C~~C~~~~~~~~C~~~CP~~ 56 (82)
T 3eun_A 29 TYVIEPSLCTECVGHYETSQCVEVCPVD 56 (82)
T ss_dssp SEEECGGGCCTTTTTCSSCHHHHHCTTC
T ss_pred ceEEchhhcCCCCCCCCccHHHHhCCcc
Confidence 3456678999999 999999974
No 47
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=72.63 E-value=0.76 Score=41.58 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=16.6
Q ss_pred CCCCCCccCCchhhcchhh
Q 011872 60 PAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~ 78 (475)
++.+.|++||.|..+||.+
T Consensus 41 ~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 41 QEPEACWECYSCIKICPQG 59 (166)
T ss_dssp SCGGGCCCCCHHHHHCSSC
T ss_pred cCcccCcccChHhHhCCcc
Confidence 5567899999999999975
No 48
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=72.46 E-value=1.2 Score=42.64 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.6
Q ss_pred CCCCCCccCCchhhcchhhh
Q 011872 60 PAKDHCSRCGLCDTYYIAHV 79 (475)
Q Consensus 60 ~~~~lCtGCGaC~~iCp~~~ 79 (475)
.+...|++||+|.++||...
T Consensus 153 ~~~~~Ci~CG~C~~~CP~~~ 172 (252)
T 2h88_B 153 DGLYECILCACCSTSCPSYW 172 (252)
T ss_dssp TTTTTCCCCCTTGGGCHHHH
T ss_pred HhHHhchhhCcchhhCCCCc
Confidence 35678999999999999753
No 49
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=69.81 E-value=0.77 Score=33.00 Aligned_cols=17 Identities=6% Similarity=-0.210 Sum_probs=15.3
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|.+||.|..+||.+
T Consensus 37 ~~~C~~C~~C~~~CP~~ 53 (58)
T 1f2g_A 37 DSDLDCVEEAIDSCPAE 53 (58)
T ss_dssp TCCSTHHHHHHHTCSSC
T ss_pred ccchHHHHHHHhhCChh
Confidence 67899999999999974
No 50
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=69.36 E-value=1.1 Score=35.26 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.6
Q ss_pred CCCCCCCccCC------chhhcchh
Q 011872 59 YPAKDHCSRCG------LCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCG------aC~~iCp~ 77 (475)
.++.+.|++|| .|..+||.
T Consensus 31 ~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (85)
T 2zvs_A 31 EINSDKCTECVGHYETPTCQKVCPI 55 (85)
T ss_dssp EECGGGCCTTTTTCSSCHHHHHCSS
T ss_pred EEeChhccCCCCcCCccHhhHhCcC
Confidence 45678999999 99999997
No 51
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=67.46 E-value=1.1 Score=32.14 Aligned_cols=17 Identities=0% Similarity=-0.230 Sum_probs=15.3
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|.+||.|..+||.+
T Consensus 38 ~~~c~~C~~C~~~CP~~ 54 (60)
T 1rof_A 38 ETDLPCAKDAADSCPTG 54 (60)
T ss_dssp SCCSTTHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHhCCHh
Confidence 67899999999999974
No 52
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=67.19 E-value=0.56 Score=34.56 Aligned_cols=18 Identities=0% Similarity=-0.241 Sum_probs=15.7
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
..+.|.+||.|..+||.+
T Consensus 40 ~~~~C~~C~~C~~~CP~~ 57 (64)
T 1dax_A 40 EGASQEEVEEAMDTCPVQ 57 (64)
T ss_dssp GGSCHHHHHHHHHHSSSC
T ss_pred CCcchhHHHHHHHhCCHh
Confidence 357899999999999974
No 53
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=67.00 E-value=0.94 Score=46.11 Aligned_cols=11 Identities=0% Similarity=-0.375 Sum_probs=6.4
Q ss_pred CcccccccCcc
Q 011872 89 GMSRIEGLETV 99 (475)
Q Consensus 89 G~~~c~~vCp~ 99 (475)
+|..|.++||.
T Consensus 243 ~Cg~C~~~CP~ 253 (366)
T 3mm5_B 243 YCGNCYTMCPG 253 (366)
T ss_dssp CCCHHHHHCTT
T ss_pred CcchHHHhCCH
Confidence 45556666664
No 54
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=66.31 E-value=1.4 Score=40.84 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.7
Q ss_pred CCCCCCCCCccCCchhhcchhh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
...++.+.|+|||.|..+||..
T Consensus 82 ~~~id~~~CigC~~C~~~CP~~ 103 (195)
T 2vpz_B 82 LVLVDPKKCIACGACIAACPYD 103 (195)
T ss_dssp CEEECTTTCCCCCHHHHHCTTC
T ss_pred ceeecCCCCCCcChhHhhCCCC
Confidence 3466788899999999999964
No 55
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=66.25 E-value=0.73 Score=43.35 Aligned_cols=22 Identities=0% Similarity=-0.315 Sum_probs=15.7
Q ss_pred CCCCCCCCCc--cCCchhhcchhh
Q 011872 57 GTYPAKDHCS--RCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCt--GCGaC~~iCp~~ 78 (475)
...++.+.|+ |||.|..+||.+
T Consensus 100 ~v~id~~~C~~~~C~~C~~~CP~~ 123 (214)
T 1h0h_B 100 CVLFTPKTKDLEDYESVISACPYD 123 (214)
T ss_dssp CEEECGGGGGCSCHHHHHHHCTTC
T ss_pred eEEEeHHHCccccccHHHHhcCCC
Confidence 3455667788 888888888854
No 56
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=65.59 E-value=1.5 Score=45.66 Aligned_cols=31 Identities=0% Similarity=-0.317 Sum_probs=17.2
Q ss_pred Cchhhcchhhhhhh----hhcCCC---CcccccccCcc
Q 011872 69 GLCDTYYIAHVKDA----CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 69 GaC~~iCp~~~~~a----~~f~~~---G~~~c~~vCp~ 99 (475)
+.|...||..+... ...+.+ +|..|.++||.
T Consensus 261 ~~cv~~CPt~Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~ 298 (418)
T 3mm5_A 261 NEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMPK 298 (418)
T ss_dssp HHTGGGCTTCCEEECSSCEEECTTTCCCCCHHHHHCTT
T ss_pred ccccccCCccccccCCceeEEChhhcCccChhHHhCcH
Confidence 77888888643211 011111 46677888886
No 57
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=65.53 E-value=1.7 Score=44.70 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=12.2
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
..++.+.|.+||.|..+||.
T Consensus 251 v~id~~~Ci~Cg~C~~~CP~ 270 (386)
T 3or1_B 251 VAINNDRCMYCGNCYTMCPA 270 (386)
T ss_dssp EEECTTTCCCCCHHHHHCTT
T ss_pred cccCCCcCCccccHHHhCcH
Confidence 34555666666666666664
No 58
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=65.36 E-value=1.5 Score=43.21 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.9
Q ss_pred CCCccCCchhhcchhh
Q 011872 63 DHCSRCGLCDTYYIAH 78 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~~ 78 (475)
..|..||.|.++||..
T Consensus 180 ~~CI~CG~C~~aCP~~ 195 (282)
T 3vr8_B 180 YECILCACCSASCPSY 195 (282)
T ss_pred hhCcccCcCcccCCce
Confidence 4599999999999964
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=65.19 E-value=1.3 Score=48.11 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=18.1
Q ss_pred CCCCCCCCccCCchhhcchh
Q 011872 58 TYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~ 77 (475)
.++..++|.|||.|...||-
T Consensus 62 ~~i~e~~c~gc~~~~~~~p~ 81 (607)
T 3bk7_A 62 PIIQEASCTGCGICVHKCPF 81 (607)
T ss_dssp EEECTTTCCCCCHHHHHCSS
T ss_pred ceeeecccCccccccCCCCc
Confidence 57789999999999999985
No 60
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=65.07 E-value=1.2 Score=50.12 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCCCccCCchhhcchhhhhh--hhhc--------------CCCCcccccccCcc
Q 011872 62 KDHCSRCGLCDTYYIAHVKD--ACAF--------------LGDGMSRIEGLETV 99 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~~~~--a~~f--------------~~~G~~~c~~vCp~ 99 (475)
.+.|++||.|..+||..... .+.+ .-.+|+.|..+||.
T Consensus 414 ~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~ 467 (807)
T 3cf4_A 414 VAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKK 467 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTT
T ss_pred HHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCC
Confidence 56799999999999975321 1100 11257889999996
No 61
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=64.98 E-value=1.3 Score=47.36 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=26.2
Q ss_pred CCCCCCCccCC--chhhcchhhhhhh------hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCSRCG--LCDTYYIAHVKDA------CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCtGCG--aC~~iCp~~~~~a------~~f~~~---G~~~c~~vCp~ 99 (475)
....+.|.+|+ .|..+||...+.. ..++.+ ||..|.++||.
T Consensus 178 ~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~ 229 (512)
T 1q16_B 178 MYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPY 229 (512)
T ss_dssp EEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTT
T ss_pred EecCccCcCCCCchhhhhCCcCcEEeecCCCeEEECHHHCCCchHHHhhCCc
Confidence 44567899999 6999999642211 011111 56788888885
No 62
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=63.92 E-value=1.4 Score=44.93 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=18.5
Q ss_pred CCCCCCCCCccCCchhhcchhh
Q 011872 57 GTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 57 ~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
...++.+.|.|||.|..+||.+
T Consensus 176 ~v~id~~kCigCg~Cv~aCP~~ 197 (352)
T 2ivf_B 176 IVLVDQERCKGHRHCVEACPYK 197 (352)
T ss_dssp CEEECTTTCCCCCHHHHHCTTC
T ss_pred eEEechhhcCCchHHHhhcCcc
Confidence 3456779999999999999974
No 63
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=63.55 E-value=0.89 Score=35.40 Aligned_cols=20 Identities=0% Similarity=-0.478 Sum_probs=16.9
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+..++|.+||.|+.+||.+
T Consensus 45 ~~~~~~c~~C~~C~~~CP~~ 64 (81)
T 1iqz_A 45 EVPDILIDDMMDAFEGCPTD 64 (81)
T ss_dssp CCCGGGHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHhCCHh
Confidence 44567899999999999974
No 64
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=62.49 E-value=1.9 Score=50.67 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCCCCCCccCCchhhcchh
Q 011872 59 YPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~ 77 (475)
.++.+.|+|||.|..+||.
T Consensus 738 ~v~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 738 QINTLDCMGCGNCADICPP 756 (1231)
T ss_dssp EECTTTCCCCCHHHHHCSS
T ss_pred eechhhCCChhHHHhhCCC
Confidence 3567889999999999997
No 65
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=60.69 E-value=1.4 Score=43.14 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=17.7
Q ss_pred CCCCCCCccCCchhhcchhh
Q 011872 59 YPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 59 ~~~~~lCtGCGaC~~iCp~~ 78 (475)
+++.++|+||++|..+||..
T Consensus 7 ~iD~~kCiGC~~C~~AC~~~ 26 (274)
T 1ti6_B 7 VIDVAKCQDCNNCFMGCMDE 26 (274)
T ss_dssp EEEGGGCCCCCHHHHHHHHH
T ss_pred EEcHHHCCCccHHHHhccHH
Confidence 56788999999999999864
No 66
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=58.96 E-value=1.9 Score=39.81 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.2
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+++.+.|+|||+|..+||..
T Consensus 6 ~~iD~~~CigC~~C~~aC~~~ 26 (195)
T 2vpz_B 6 MAIDLSLCVGCAACAVACKME 26 (195)
T ss_dssp EEEETTTCCCCCHHHHHHHHH
T ss_pred EEeeHHHCcChhHHHHHhhHh
Confidence 367789999999999999964
No 67
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=58.41 E-value=2.6 Score=43.65 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=16.4
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
+.+.|.+||.|..+||..
T Consensus 62 ~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPEN 79 (421)
T ss_dssp CGGGCCCCCTTGGGCTTC
T ss_pred ChhhCCchhhHHHhhCcC
Confidence 678899999999999975
No 68
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=57.95 E-value=3 Score=39.28 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.7
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
....|+.||.|..+||.+
T Consensus 202 ~~~~C~~Cg~C~~vCP~g 219 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKG 219 (238)
T ss_dssp TTTTCCCCCHHHHHCTTC
T ss_pred CCCcCcccchhhhhcCCC
Confidence 456799999999999974
No 69
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=57.24 E-value=2.9 Score=40.01 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=15.1
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
...|+.||.|..+||++
T Consensus 212 ~~~C~~Cg~C~~~CP~~ 228 (252)
T 2h88_B 212 LYRCHTIMNCTRTCPKG 228 (252)
T ss_dssp TTTCCCCCHHHHHCTTC
T ss_pred CCcCccccchhhhcCCC
Confidence 46799999999999975
No 70
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=56.10 E-value=2.9 Score=39.55 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.9
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
...|++||.|..+||++
T Consensus 205 ~~~C~~Cg~C~~vCP~~ 221 (241)
T 2bs2_B 205 VFGCMTLLACHDVCPKN 221 (241)
T ss_dssp GGGCCCCCHHHHHCTTC
T ss_pred cccCcccChhhHhcCCC
Confidence 45799999999999975
No 71
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=55.88 E-value=1.9 Score=42.54 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.0
Q ss_pred CCCCCCCCCCccCCchhhcchhh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~~ 78 (475)
|...++.+.|+|||.|..+||.+
T Consensus 124 g~v~id~~~CigCg~C~~~CP~~ 146 (294)
T 1kqf_B 124 GIVDFQSENCIGCGYCIAGCPFN 146 (294)
T ss_dssp SCEEECGGGCCCCCHHHHHCTTC
T ss_pred cceEeCcccCCCcchhhhcCCCC
Confidence 34456789999999999999964
No 72
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=53.53 E-value=3.3 Score=39.07 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCCccCCchhhcchhh
Q 011872 61 AKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp~~ 78 (475)
....|++||.|..+||.+
T Consensus 200 ~~~~C~~Cg~C~~vCP~g 217 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKH 217 (243)
T ss_dssp TGGGCCCCCHHHHHCTTC
T ss_pred CcccCcccCCcchhCCCC
Confidence 345799999999999974
No 73
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=51.21 E-value=1.4 Score=44.79 Aligned_cols=9 Identities=0% Similarity=-0.411 Sum_probs=5.5
Q ss_pred Cchhhcchh
Q 011872 69 GLCDTYYIA 77 (475)
Q Consensus 69 GaC~~iCp~ 77 (475)
|.|..+||.
T Consensus 214 ~~Cv~~CP~ 222 (366)
T 3mm5_B 214 PSTVAACPT 222 (366)
T ss_dssp HHHHHTCTT
T ss_pred cchhccCCc
Confidence 666666664
No 74
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=50.72 E-value=2.5 Score=39.63 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=17.7
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
.+++.++|+||++|..+|+..
T Consensus 4 ~~iD~~kCigC~~C~~AC~~~ 24 (214)
T 1h0h_B 4 FFVDTTRCTACRGCQVACKQW 24 (214)
T ss_dssp EEEEGGGCCCCCHHHHHHHHH
T ss_pred EEEeHHHCCCCcHHHHHhhHH
Confidence 356778999999999999863
No 75
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=50.33 E-value=3.9 Score=43.99 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|.+||.|..+||..
T Consensus 183 ~~i~~~~Ci~Cg~Cv~~CP~g 203 (574)
T 3c8y_A 183 KCFDDTNCLLCGQCIIACPVA 203 (574)
T ss_dssp CCGGGSSCCCCCHHHHHCSST
T ss_pred ceechhhCCcchhHHHhhccC
Confidence 346778999999999999974
No 76
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=47.29 E-value=72 Score=27.59 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=44.5
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCce----E----------EEcccCCCCCCHHHHHHHHHHhCCC
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKL----Y----------VLGTNCVDNGTREGLDKFLKAASSE 267 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~L----y----------~Igl~C~G~~S~~~~~~~L~~~~~~ 267 (475)
+...++.+.+.|.+-+++++.+ -..++.+.+.++.+.. + +.+..|.+.|.+..++..++.++++
T Consensus 80 ~~~~l~~l~~~g~~~~i~S~~~--~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~g~~ 157 (217)
T 3m1y_A 80 ALELVSALKEKNYKVVCFSGGF--DLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNIS 157 (217)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEE--HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCEEEEEcCCc--hhHHHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCChHHHHHHHHHHcCCC
Confidence 4455555555543444444433 3334444444555432 2 3456788899999999999999998
Q ss_pred CCceEEE
Q 011872 268 PETVLHY 274 (475)
Q Consensus 268 ~~~V~~i 274 (475)
++++..|
T Consensus 158 ~~~~i~v 164 (217)
T 3m1y_A 158 KTNTLVV 164 (217)
T ss_dssp STTEEEE
T ss_pred HhHEEEE
Confidence 8887655
No 77
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=45.80 E-value=3.1 Score=42.67 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=26.3
Q ss_pred CCCCCCCc---cCCchhhcchhhhhhh------------hhcCCC---CcccccccCcc
Q 011872 59 YPAKDHCS---RCGLCDTYYIAHVKDA------------CAFLGD---GMSRIEGLETV 99 (475)
Q Consensus 59 ~~~~~lCt---GCGaC~~iCp~~~~~a------------~~f~~~---G~~~c~~vCp~ 99 (475)
.++.+.|. +|+.|.++||..++.. ...+.+ +|..|.++||.
T Consensus 212 ~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~ 270 (386)
T 3or1_B 212 MIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPA 270 (386)
T ss_dssp CCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTT
T ss_pred eechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcH
Confidence 45556553 6699999999764321 111222 57789999996
No 78
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=44.64 E-value=3.2 Score=43.41 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=6.9
Q ss_pred HHHHHHHHhCCC
Q 011872 256 GLDKFLKAASSE 267 (475)
Q Consensus 256 ~~~~~L~~~~~~ 267 (475)
++++|++.++++
T Consensus 387 G~~~f~e~~~l~ 398 (437)
T 3or1_A 387 GFQKLLEVTGTK 398 (437)
T ss_dssp CHHHHHHHTTCC
T ss_pred CHHHHHHHHCCC
Confidence 455666666643
No 79
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=44.21 E-value=6.9 Score=43.57 Aligned_cols=18 Identities=6% Similarity=-0.224 Sum_probs=15.3
Q ss_pred CCccCCchhhcchhhhhh
Q 011872 64 HCSRCGLCDTYYIAHVKD 81 (475)
Q Consensus 64 lCtGCGaC~~iCp~~~~~ 81 (475)
.|.+||.|..+||.....
T Consensus 219 ~C~~CG~Cv~vCP~gAl~ 236 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALL 236 (783)
T ss_dssp CSTTTTTHHHHCSSSSEE
T ss_pred CCccchhHHhhcccCcee
Confidence 699999999999976443
No 80
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=42.60 E-value=6.1 Score=45.27 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=14.4
Q ss_pred CCCccCCchhhcchh
Q 011872 63 DHCSRCGLCDTYYIA 77 (475)
Q Consensus 63 ~lCtGCGaC~~iCp~ 77 (475)
+.|++||.|..+||.
T Consensus 984 ~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 984 DTCTGCTLCLSVCPI 998 (1025)
T ss_dssp TTCCCCCHHHHHCSS
T ss_pred ccCCChhHHHhhCCC
Confidence 889999999999996
No 81
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=41.02 E-value=5.4 Score=42.64 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCCCCCCCccCCchhhcchhh
Q 011872 58 TYPAKDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp~~ 78 (475)
..++.+.|.+||.|...||..
T Consensus 546 ~~i~~~~Ci~C~~C~~~cp~~ 566 (584)
T 2gmh_A 546 LQINAQNCVHCKTCDIKDPSQ 566 (584)
T ss_dssp EEECGGGCCCCCHHHHHCTTC
T ss_pred EEEeCCCCcCCCCchhhCCCC
Confidence 356777899999998888864
No 82
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=40.81 E-value=1.7e+02 Score=25.28 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=45.1
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+...++.+.+.|.+-+++++.+ ...++.+.+.++. +.++..+..-.+.|.+..++..++.++++++++..|
T Consensus 101 ~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 175 (230)
T 3um9_A 101 VPQALQQLRAAGLKTAILSNGS--RHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHLGESEILFV 175 (230)
T ss_dssp HHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHhCCCeEEEEeCCC--HHHHHHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHHhCCCcccEEEE
Confidence 4445555666643334444444 3334444444443 445555566668899999999999999988887766
No 83
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=40.45 E-value=1.6e+02 Score=24.92 Aligned_cols=74 Identities=7% Similarity=0.069 Sum_probs=47.9
Q ss_pred chHHHHHHHHcCCCEEEEEecch---------HH----HHHHHHHHhcC--CCceEEE-----cccCCCCCCHHHHHHHH
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGC---------QV----QALRSVEHHLN--LEKLYVL-----GTNCVDNGTREGLDKFL 261 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPC---------QI----~ALr~l~~~l~--~e~Ly~I-----gl~C~G~~S~~~~~~~L 261 (475)
+.+.|+++.+.|.+-+++++.|- ++ ..++.+++.++ .+.++.. +-.=.+-|.++.++..+
T Consensus 32 ~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~ 111 (179)
T 3l8h_A 32 SLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIA 111 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEEECCCTTSCCSSSTTSSHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEEcCCCCCCCCCCCCCCHHHHHHHH
Confidence 55667777777655566777764 11 34444455566 5555432 11123578899999999
Q ss_pred HHhCCCCCceEEEE
Q 011872 262 KAASSEPETVLHYE 275 (475)
Q Consensus 262 ~~~~~~~~~V~~i~ 275 (475)
+.++.+|+++..|.
T Consensus 112 ~~~~~~~~~~~~vG 125 (179)
T 3l8h_A 112 RRYDVDLAGVPAVG 125 (179)
T ss_dssp HHHTCCCTTCEEEE
T ss_pred HHcCCCHHHEEEEC
Confidence 99999999887664
No 84
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=38.51 E-value=7.3 Score=38.34 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.9
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
-..|+.||.|..+||++
T Consensus 236 l~~C~~Cg~C~~vCP~g 252 (282)
T 3vr8_B 236 AFKCHTIMNCTKTCPKH 252 (282)
T ss_pred cccChhhCCccccCcCC
Confidence 45799999999999975
No 85
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=34.58 E-value=8 Score=40.16 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=15.0
Q ss_pred CCCCCCCCCCccCCchhhcchh
Q 011872 56 GGTYPAKDHCSRCGLCDTYYIA 77 (475)
Q Consensus 56 ~~~~~~~~lCtGCGaC~~iCp~ 77 (475)
+...++.+.|.+||.|..+||.
T Consensus 277 ~~~~id~~~Ci~Cg~Ci~~CP~ 298 (418)
T 3mm5_A 277 KELTIDNRECVRCMHCINKMPK 298 (418)
T ss_dssp SCEEECTTTCCCCCHHHHHCTT
T ss_pred ceeEEChhhcCccChhHHhCcH
Confidence 4455567777777777777775
No 86
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=33.23 E-value=1.8e+02 Score=25.81 Aligned_cols=74 Identities=9% Similarity=0.013 Sum_probs=47.1
Q ss_pred chHHHHHHHHcCCCEEEEEecchHH-------------HHHHHHHHhcCC--CceEEE------------cccCCCCCCH
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQV-------------QALRSVEHHLNL--EKLYVL------------GTNCVDNGTR 254 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI-------------~ALr~l~~~l~~--e~Ly~I------------gl~C~G~~S~ 254 (475)
+.+.|+.+.+.|.+-+++++.+-.. ..++.+++.++. +..+.. +..=.+-|.+
T Consensus 61 ~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~g~~~~~~~~~~~~KP~~ 140 (218)
T 2o2x_A 61 MLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNP 140 (218)
T ss_dssp GHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCSEEEEECCCTTCCSTTCCSSCTTSTTSC
T ss_pred HHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCceeeEEEeecCCCCceeecccCCccCCCCH
Confidence 4556777777765666677766521 455555555564 333332 1122467889
Q ss_pred HHHHHHHHHhCCCCCceEEEE
Q 011872 255 EGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 255 ~~~~~~L~~~~~~~~~V~~i~ 275 (475)
..++..++.++++++++..|.
T Consensus 141 ~~~~~~~~~~~i~~~~~~~VG 161 (218)
T 2o2x_A 141 GMLVEAGKRLALDLQRSLIVG 161 (218)
T ss_dssp HHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEEe
Confidence 999999999999888877653
No 87
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=33.12 E-value=2e+02 Score=25.31 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=44.6
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
....++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+..-.+.|.+..++..++.++++|+++..|
T Consensus 110 ~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 184 (240)
T 2no4_A 110 AAETLEKLKSAGYIVAILSNGND--EMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFV 184 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHhcCcHHHcCEEEEccccCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 44556666666433334444443 334444444554 344555555567899999999999999988887766
No 88
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=32.46 E-value=1.9e+02 Score=24.94 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=44.5
Q ss_pred chHHHHHHHHcCCCEEEEEecch-HHHHHHHHHHhcCCCceE----EEccc----CCCCCCHHHHHHHHHHhCCCCCceE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGC-QVQALRSVEHHLNLEKLY----VLGTN----CVDNGTREGLDKFLKAASSEPETVL 272 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPC-QI~ALr~l~~~l~~e~Ly----~Igl~----C~G~~S~~~~~~~L~~~~~~~~~V~ 272 (475)
+.+.|+.+.+.|.+-+++++.+- .-..++.+++.++.+..+ +-+-. =.+-|+++.++..++.++.+|+++.
T Consensus 39 ~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 118 (189)
T 3ib6_A 39 AKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAV 118 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEE
Confidence 44556666666544445555543 123444555556654432 22211 1346899999999999999888887
Q ss_pred EEE
Q 011872 273 HYE 275 (475)
Q Consensus 273 ~i~ 275 (475)
.|.
T Consensus 119 ~VG 121 (189)
T 3ib6_A 119 MVG 121 (189)
T ss_dssp EEE
T ss_pred EEC
Confidence 764
No 89
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=31.89 E-value=1.1e+02 Score=25.65 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=40.8
Q ss_pred hHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 203 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 203 l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
.+.++++.+.|.+-++++|.+- ..++.+.+.++.+..+ ..+.|.+..++..++.++.+++++..+
T Consensus 42 ~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~~-----~~~kp~~~~~~~~~~~~~~~~~~~~~v 106 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAVISGRDS--APLITRLKELGVEEIY-----TGSYKKLEIYEKIKEKYSLKDEEIGFI 106 (162)
T ss_dssp HHHHHHHHTTTCEEEEEESCCC--HHHHHHHHHTTCCEEE-----ECC--CHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCHhhc-----cCCCCCHHHHHHHHHHcCCCHHHEEEE
Confidence 3556666666544455666653 3445555556765433 347899999999999999888776654
No 90
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=31.80 E-value=9.8 Score=36.78 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=12.1
Q ss_pred CCCCCccCCchhhcch
Q 011872 61 AKDHCSRCGLCDTYYI 76 (475)
Q Consensus 61 ~~~lCtGCGaC~~iCp 76 (475)
+.+.|++||.|..+||
T Consensus 199 d~~~C~~C~~C~~vCp 214 (265)
T 2pa8_D 199 NELSCTLCEECLRYCN 214 (265)
T ss_dssp CGGGCCCCCHHHHHHT
T ss_pred ccccCCCchHHHHhCC
Confidence 3467888888888887
No 91
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=31.27 E-value=9 Score=37.04 Aligned_cols=33 Identities=6% Similarity=-0.127 Sum_probs=21.5
Q ss_pred ccCCchhhcchhhhhhh--h--hc----CCCCcccccccCc
Q 011872 66 SRCGLCDTYYIAHVKDA--C--AF----LGDGMSRIEGLET 98 (475)
Q Consensus 66 tGCGaC~~iCp~~~~~a--~--~f----~~~G~~~c~~vCp 98 (475)
.+||.|...||...... - .+ .-.+|..|.++||
T Consensus 174 ~~C~~C~~~CP~g~I~id~~~~v~~d~~~C~~C~~C~~vCp 214 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCN 214 (265)
T ss_dssp SCCTTHHHHCTTCCEEEETTEEEESCGGGCCCCCHHHHHHT
T ss_pred hhHHHHHHhCcccCeEecCCeeEEeccccCCCchHHHHhCC
Confidence 89999999999753210 0 01 1225677888888
No 92
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=29.69 E-value=1.5e+02 Score=25.61 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=46.0
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+...++++.+.|.+-+++++.+ ...++.+++.++. +.++..+..-.+.|.+..++..++.++++++++..|
T Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~i~i 170 (233)
T 3s6j_A 96 AVELLETLDKENLKWCIATSGG--IDTATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVI 170 (233)
T ss_dssp HHHHHHHHHHTTCCEEEECSSC--HHHHHHHHHTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCc--hhhHHHHHHhcchhhhhheeeccccCCCCCCChHHHHHHHHHhCCCHHHEEEE
Confidence 3445556666654444555544 2334444444443 445555666668899999999999999988887765
No 93
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=29.04 E-value=6.8 Score=41.84 Aligned_cols=41 Identities=7% Similarity=-0.086 Sum_probs=28.2
Q ss_pred CCCCC------ccCCchhhcchhhhhhh----------hhcCCCC---cccccccCcccc
Q 011872 61 AKDHC------SRCGLCDTYYIAHVKDA----------CAFLGDG---MSRIEGLETVVH 101 (475)
Q Consensus 61 ~~~lC------tGCGaC~~iCp~~~~~a----------~~f~~~G---~~~c~~vCp~~~ 101 (475)
+.+.| +.||.|..+||..+... ..++.++ |+.|...||...
T Consensus 508 d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~ 567 (584)
T 2gmh_A 508 DDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQN 567 (584)
T ss_dssp STTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCC
T ss_pred CcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCC
Confidence 45679 99999999999875532 1223333 567888888644
No 94
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=27.54 E-value=2.4e+02 Score=24.18 Aligned_cols=72 Identities=7% Similarity=0.128 Sum_probs=42.8
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
+.+.|+.+.+.|.+-++++|.+- -..++.+.+.++.+..+-.- ++.+.+.++.+...++.++++++++..|.
T Consensus 73 ~~e~L~~L~~~G~~v~ivT~~~~-~~~~~~~l~~~gl~~~f~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~ig 144 (187)
T 2wm8_A 73 VPEVLKRLQSLGVPGAAASRTSE-IEGANQLLELFDLFRYFVHR-EIYPGSKITHFERLQQKTGIPFSQMIFFD 144 (187)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSC-HHHHHHHHHHTTCTTTEEEE-EESSSCHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHCCceEEEEeCCCC-hHHHHHHHHHcCcHhhccee-EEEeCchHHHHHHHHHHcCCChHHEEEEe
Confidence 44556666667666667777762 12233344456665443211 12234667788888899998888776553
No 95
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=27.26 E-value=15 Score=41.23 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=14.8
Q ss_pred CCCCccCCchhhcchhh
Q 011872 62 KDHCSRCGLCDTYYIAH 78 (475)
Q Consensus 62 ~~lCtGCGaC~~iCp~~ 78 (475)
.+.|++||.|..+||..
T Consensus 452 ~~~Ci~Cg~C~~vCP~g 468 (807)
T 3cf4_A 452 HDTCIGCRRCEQVCKKE 468 (807)
T ss_dssp HHHCCCCCHHHHHCTTC
T ss_pred hhhccchhhHHHhCCCC
Confidence 35799999999999974
No 96
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=27.08 E-value=2.2e+02 Score=24.48 Aligned_cols=71 Identities=6% Similarity=0.038 Sum_probs=46.2
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
....++.+.+.|.+-.++++.+- ..++.+.+.++. +.++..+..-.+.|.+..++..++.++++|+++..|
T Consensus 91 ~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~i~i 165 (226)
T 3mc1_A 91 IEALLSSLKDYGFHLVVATSKPT--VFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDAIMI 165 (226)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEH--HHHHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCcCcccEEEE
Confidence 34455556666544444555433 334444444443 456677777778899999999999999988877665
No 97
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=26.36 E-value=3.1e+02 Score=23.62 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=45.1
Q ss_pred hHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCC-ceEEEE
Q 011872 203 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPE-TVLHYE 275 (475)
Q Consensus 203 l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~-~V~~i~ 275 (475)
...++.+.+.|.+-+++++.+- ..++.+.+.++. +.++.-+-.-.+.|.++.++..++.++++++ ++..|.
T Consensus 109 ~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~~v~vG 184 (231)
T 3kzx_A 109 IELLDTLKENNITMAIVSNKNG--ERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFIG 184 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHTCCCSTTEEEEE
T ss_pred HHHHHHHHHCCCeEEEEECCCH--HHHHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHHcCCCcccCEEEEc
Confidence 3445555666444444444433 334444444553 4456666666788999999999999999888 776653
No 98
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=26.17 E-value=1.6e+02 Score=24.83 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=44.4
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCC----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e----~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+...++.+.+.| -+++++ |......++...+.++.+ .++.-+-.-.+.|.++.++..++.++.+|+++..|
T Consensus 89 ~~~~l~~l~~~g-~~~~i~-s~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~i 163 (216)
T 2pib_A 89 VREALEFVKSKR-IKLALA-TSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVF 163 (216)
T ss_dssp HHHHHHHHHHTT-CEEEEE-CSSCHHHHHHHHHHTTCGGGCSEEECGGGSSSCTTSTHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHCC-CCEEEE-eCCcHHhHHHHHHhcChHHhcCEEeecccCCCCCcCcHHHHHHHHHcCCCCceEEEE
Confidence 444555666664 444443 223334444444445543 34444555668899999999999999998887765
No 99
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=25.91 E-value=2.2e+02 Score=23.85 Aligned_cols=72 Identities=15% Similarity=-0.001 Sum_probs=44.6
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
....++.+.+.|.+-+++++.+ -..++.+.+.++. +.++.-+-.=.+.|.++.++..++.++.+++++..|.
T Consensus 94 ~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iG 169 (214)
T 3e58_A 94 VLKVLNEVKSQGLEIGLASSSV--KADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIE 169 (214)
T ss_dssp HHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCc--HHHHHHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCCChHHeEEEe
Confidence 3445556666654444444443 3334444444554 3344444445678899999999999999988887663
No 100
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=25.53 E-value=7 Score=40.47 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=24.6
Q ss_pred hhhhccccCCCCCCCCCCCCCccCCc--hhhcchhhh
Q 011872 45 DWRKRSKPIPPGGTYPAKDHCSRCGL--CDTYYIAHV 79 (475)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~lCtGCGa--C~~iCp~~~ 79 (475)
||.+-..++......-.-..|..||. |...||.++
T Consensus 2 ~~~e~~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~ 38 (456)
T 2vdc_G 2 DFAEIYARFSDERANEQANRCSQCGVPFCQVHCPVSN 38 (456)
T ss_dssp CCCCCCSSCCCTTHHHHHHHSCCCSSCHHHHTSTTCC
T ss_pred ChhhhhccCCHHHHHHHHHhhhcCCCchhhcCCCCCC
Confidence 45555555555544445667999997 999999764
No 101
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=23.92 E-value=2.2e+02 Score=24.59 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
+...++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+-.-.+-|.+..+...++.++++++++..|
T Consensus 104 ~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~v 178 (233)
T 3umb_A 104 NVPVLRQLREMGLPLGILSNGNP--QMLEIAVKSAGMSGLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQILFV 178 (233)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCH--HHHHHHHHTTTCTTTCSEEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeCCCH--HHHHHHHHHCCcHhhcCEEEEecccCCCCcCHHHHHHHHHHhCCCcccEEEE
Confidence 34455555555545555555543 334444444453 445566666678899999999999999998887766
No 102
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=23.80 E-value=34 Score=22.27 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=13.0
Q ss_pred CCCCCCCCccCCchhhcch
Q 011872 58 TYPAKDHCSRCGLCDTYYI 76 (475)
Q Consensus 58 ~~~~~~lCtGCGaC~~iCp 76 (475)
+...+++|+. |+|+.+|.
T Consensus 13 pilknglccs-gacvgvca 30 (33)
T 1g1p_A 13 PILKNGLCCS-GACVGVCA 30 (33)
T ss_dssp SSSSCCCBTT-BCBSSBBC
T ss_pred hhhcCCcccC-CceeEEee
Confidence 3556788864 78888884
No 103
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=23.36 E-value=2.1e+02 Score=24.60 Aligned_cols=71 Identities=14% Similarity=-0.006 Sum_probs=43.8
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
+...+..+. .+ -+++++-- ..-..++...+.++. +.++..+..-.+.|.+..++..++.++++|+++..|.
T Consensus 112 ~~~~l~~l~-~g-~~~~i~sn-~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iG 186 (240)
T 3qnm_A 112 AKEVLEYLA-PQ-YNLYILSN-GFRELQSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESLMIG 186 (240)
T ss_dssp HHHHHHHHT-TT-SEEEEEEC-SCHHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHH-cC-CeEEEEeC-CchHHHHHHHHHcChHhhceeEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEEC
Confidence 344455554 54 45444432 222333444343443 4456666666789999999999999999998887663
No 104
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=23.33 E-value=3e+02 Score=23.74 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=43.4
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
....++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+..=.+-|.+..++..++.++.+++++..|
T Consensus 100 ~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 174 (232)
T 1zrn_A 100 VPDSLRELKRRGLKLAILSNGSP--QSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFV 174 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHhcChHhhhheEEEecccCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 34455556666544444445443 334444444554 334444444457899999999999999988887765
No 105
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=23.28 E-value=3e+02 Score=24.03 Aligned_cols=71 Identities=8% Similarity=0.053 Sum_probs=46.1
Q ss_pred hHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCC-CCceEEEE
Q 011872 203 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSE-PETVLHYE 275 (475)
Q Consensus 203 l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~-~~~V~~i~ 275 (475)
...++.+.+.|.+-+++++.+ ...++.+.+.++. +.++..+..-.+.|.+..++..++.++++ ++++..|.
T Consensus 116 ~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~i~vG 191 (240)
T 3sd7_A 116 KEILEMLYKNGKILLVATSKP--TVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVG 191 (240)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE--HHHHHHHHHHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred HHHHHHHHHCCCeEEEEeCCc--HHHHHHHHHHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHHcCCCCCCcEEEEC
Confidence 345555666644444444443 2334444444453 45666777777889999999999999998 88887663
No 106
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=23.24 E-value=1.6e+02 Score=25.06 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCEEEE-EecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 205 TLALVEAAGVKRLLF-CGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 205 ~l~ev~~~g~kkVlf-vGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
.++.+.+. + ++++ ++.+-. .++.+.+.++. +.++..+-.-.+-|+++.++..++.++.+++++..|.
T Consensus 94 ~l~~l~~~-g-~~~i~s~~~~~--~~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vg 165 (200)
T 3cnh_A 94 LARDLGQR-Y-RMYSLNNEGRD--LNEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVMVD 165 (200)
T ss_dssp HHHHHTTT-S-EEEEEECCCHH--HHHHHHHHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHc-C-CEEEEeCCcHH--HHHHHHHhCCHHHhcceEEeecccCCCCCCHHHHHHHHHHcCCCHHHeEEeC
Confidence 34444444 4 5554 454433 23333333343 4455555556688999999999999999888877663
No 107
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=21.97 E-value=2e+02 Score=24.73 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 204 NTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 204 ~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
..++++.+.|.+-++++|.+-. .++.+.+.++.+..+ ..+.+.+..++..++.++.+++++..+
T Consensus 42 ~~l~~L~~~G~~~~i~Tg~~~~--~~~~~~~~lgl~~~~-----~~~k~k~~~~~~~~~~~~~~~~~~~~v 105 (180)
T 1k1e_A 42 LGIKMLMDADIQVAVLSGRDSP--ILRRRIADLGIKLFF-----LGKLEKETACFDLMKQAGVTAEQTAYI 105 (180)
T ss_dssp HHHHHHHHTTCEEEEEESCCCH--HHHHHHHHHTCCEEE-----ESCSCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHCCCeEEEEeCCCcH--HHHHHHHHcCCceee-----cCCCCcHHHHHHHHHHcCCCHHHEEEE
Confidence 4666677776666777777654 344444556665433 456788889999999999887776544
No 108
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=20.95 E-value=1.5e+02 Score=28.72 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=44.0
Q ss_pred chHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCCCceEE--------------EcccCCCCCCHHHHHHHHHHhCCC
Q 011872 202 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYV--------------LGTNCVDNGTREGLDKFLKAASSE 267 (475)
Q Consensus 202 ~l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~--------------Igl~C~G~~S~~~~~~~L~~~~~~ 267 (475)
+.+.++.+.+.|.+-+++++.+- ..++.+.+.++.+..+- .+-.+.+.|.++.+...++.++.+
T Consensus 184 ~~e~L~~Lk~~G~~v~IvSn~~~--~~~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~~~lgv~ 261 (317)
T 4eze_A 184 LLTILPVIKAKGFKTAIISGGLD--IFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKKQTLVDLAARLNIA 261 (317)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCEEEEEeCccH--HHHHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCHHHHHHHHHHcCCC
Confidence 44556666667655555665553 44445555566654332 223445567788889999999988
Q ss_pred CCceEEE
Q 011872 268 PETVLHY 274 (475)
Q Consensus 268 ~~~V~~i 274 (475)
++++..+
T Consensus 262 ~~~~i~V 268 (317)
T 4eze_A 262 TENIIAC 268 (317)
T ss_dssp GGGEEEE
T ss_pred cceEEEE
Confidence 8877655
No 109
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=20.51 E-value=3.5e+02 Score=22.82 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=42.3
Q ss_pred hHHHHHHHHcCCCEEEEEecchHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 011872 203 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 274 (475)
Q Consensus 203 l~~l~ev~~~g~kkVlfvGtPCQI~ALr~l~~~l~~----e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i 274 (475)
...++.+.+.+.+.+.+++.+-. .++.+.+.++. +.++..+..-.+.|.+..++..++.++++++++..|
T Consensus 100 ~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~i~~~~~i~i 173 (226)
T 1te2_A 100 REAVALCKEQGLLVGLASASPLH--MLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVAL 173 (226)
T ss_dssp HHHHHHHHHTTCEEEEEESSCHH--HHHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHhcCcHhhCcEEEeccccCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 34455555554444455555432 23444444453 344554555556778899999999999988887665
No 110
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=20.05 E-value=1.8e+02 Score=24.89 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=41.4
Q ss_pred chHHHHHHHHcC-CCEEEEEecchHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 011872 202 NLNTLALVEAAG-VKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 275 (475)
Q Consensus 202 ~l~~l~ev~~~g-~kkVlfvGtPCQI~ALr~l~~~l~~e~Ly~Igl~C~G~~S~~~~~~~L~~~~~~~~~V~~i~ 275 (475)
....++.+.+.| .+-+++++.+- ..++...+.++....+- .+++.+-|.+..++..++.++++|+++..|.
T Consensus 110 ~~~~l~~l~~~g~~~~~i~t~~~~--~~~~~~l~~~~~~~~f~-~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iG 181 (234)
T 3ddh_A 110 VKETLKTLKETGKYKLVVATKGDL--LDQENKLERSGLSPYFD-HIEVMSDKTEKEYLRLLSILQIAPSELLMVG 181 (234)
T ss_dssp HHHHHHHHHHHCCCEEEEEEESCH--HHHHHHHHHHTCGGGCS-EEEEESCCSHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHhCcHhhhh-eeeecCCCCHHHHHHHHHHhCCCcceEEEEC
Confidence 344555566664 44444554443 23333333344332110 0124578999999999999999999887664
Done!