Query 011875
Match_columns 475
No_of_seqs 148 out of 1373
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 17:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011875.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011875hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.1 2.1E-09 1.5E-13 106.8 20.5 87 32-125 115-202 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 98.4 1.5E-06 1.1E-10 83.4 14.9 94 346-455 310-404 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.3 9.8E-06 7.1E-10 79.4 18.1 114 265-407 62-175 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 96.1 0.0024 1.7E-07 60.1 5.6 88 32-126 311-399 (417)
5 d2qkwa1 a.8.8.1 (A:29-129) Avi 23.6 10 0.00075 26.3 0.6 25 369-393 25-49 (101)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 22.0 20 0.0014 25.8 2.0 29 433-461 22-50 (91)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 14.1 85 0.0062 22.8 4.1 14 446-459 52-65 (107)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 10.9 1.1E+02 0.0082 21.7 3.9 11 448-458 48-58 (100)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 9.2 1.1E+02 0.0078 16.7 2.3 20 103-123 14-33 (34)
10 d1cr8a_ g.12.1.1 (A:) Ligand-b 5.3 1.3E+02 0.0097 17.7 1.5 14 462-475 26-39 (42)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.10 E-value=2.1e-09 Score=106.85 Aligned_cols=87 Identities=11% Similarity=0.020 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhheecc-CCccchhH
Q 011875 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY~~iNiG~~ia~~~~~~l~~~-~g~~~~F~ 110 (475)
..+.++++..+.++|.|..-+...++++|.++++ +|...++++..+.++|..+++.+.+.+... .+|+..|.
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~ 187 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 187 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh-------cccccccccccccchhhhhhhhhhhhHhhhhhcccccch
Confidence 4566778888899999999999999999988653 588999999999999999999887765544 58999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011875 111 VPAVIMLLSALSFFL 125 (475)
Q Consensus 111 i~~v~~~~~~ivf~~ 125 (475)
+.++..++..++.+.
T Consensus 188 ~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 188 MPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHH
Confidence 887766665555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.42 E-value=1.5e-06 Score=83.45 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHH-hHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 011875 346 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 424 (475)
Q Consensus 346 vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~-~l~~~ig~~l~~~l~~~~~~~~~~~~~~~w~~~~l 424 (475)
.+.++++...++.+++..+..+....++.+..|++.|+..+|+. .+..++|..+++.+.+...+.. +
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~------g------ 377 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------G------ 377 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH------C------
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C------
Confidence 45677778889999999999999999999999999999999975 4667788888888776654221 1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011875 425 NKGHYDYYYWLLTALSMANFLYYLACCKAYG 455 (475)
Q Consensus 425 n~~~~~~~f~~la~l~~~~~~~~~~~~~~y~ 455 (475)
....|++.++++++..++.++..|+-+
T Consensus 378 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 378 ----FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 344567778887777776666655443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.30 E-value=9.8e-06 Score=79.43 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=85.8
Q ss_pred CccchhhHHHHHHHHHhhhhhHhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccc
Q 011875 265 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 344 (475)
Q Consensus 265 ~~~~~~n~l~iii~~pl~~~~~~p~~~~~~~~~~~~s~~~ki~~G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (475)
+++.+...+...+..|+..++ .+|. ...+-+.+|+++.+++.+..+++...
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~------------------ 112 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSV----SDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA------------------ 112 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHc-------CchHHHHHHHHHHHHHHhhccccchh------------------
Confidence 355566666666666666654 3443 22244667888888887776654321
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCchhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 011875 345 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 407 (475)
Q Consensus 345 ~vs~~wli~~yvl~~~gEl~~~p~gle~~~~~AP~~~kg~~~g~~~l~~~ig~~l~~~l~~~~ 407 (475)
..+.++++...++.++++....+.....+.+..|++.|+..+|++....++|..+++.+....
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 145667788889999999999999999999999999999999999999999999988776654
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=96.14 E-value=0.0024 Score=60.05 Aligned_cols=88 Identities=9% Similarity=0.088 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHhhcccccccchhhhhccCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHhhhhhheeccCCccchhH
Q 011875 32 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGWKVGFG 110 (475)
Q Consensus 32 ~~~~~~~~L~li~lG~G~~kp~i~~~~~dq~~~~~~~~~~~~~~~~F~~fY-~~iNiG~~ia~~~~~~l~~~~g~~~~F~ 110 (475)
+.+.+++...+.+++.|...+...++..|.++++ .|.+.+.+.+ .+.++|..+++.+.+++.++.||+..|.
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR-------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG-------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 4566777888899999999999999999998653 4778888866 4567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 011875 111 VPAVIMLLSALSFFLA 126 (475)
Q Consensus 111 i~~v~~~~~~ivf~~~ 126 (475)
+.++..++..++.++.
T Consensus 384 ~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888777777665543
No 5
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=23.55 E-value=10 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHhhhcCchhhhHHHHHHhHHH
Q 011875 369 QTEFYYTELPKSMSSIASTLSGAGL 393 (475)
Q Consensus 369 gle~~~~~AP~~~kg~~~g~~~l~~ 393 (475)
.-||+.++||+++|+.+-.+|.-+.
T Consensus 25 qhefissqap~slr~~ynnlyshtq 49 (101)
T d2qkwa1 25 QHEFVSSQAPQSLRNRYNNLYSHTQ 49 (101)
T ss_dssp HHTTTSSSCCSSGGGHHHHHHHHHH
T ss_pred HHHHHhhcCcHHHHHHHhhHHHHHH
Confidence 3589999999999999998876543
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=22.02 E-value=20 Score=25.76 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcCCC
Q 011875 433 YWLLTALSMANFLYYLACCKAYGPFKGRV 461 (475)
Q Consensus 433 f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 461 (475)
+++.+++.++...++..+..||++++.++
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 34444555555556666677777665443
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=14.12 E-value=85 Score=22.81 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=6.0
Q ss_pred HHHHHhhhcCCCcC
Q 011875 446 YYLACCKAYGPFKG 459 (475)
Q Consensus 446 ~~~~~~~~y~~~~~ 459 (475)
++.....+|++++.
T Consensus 52 ~~~~~~~~~r~~~~ 65 (107)
T d3ehbb2 52 LLLICIVRFNRRAN 65 (107)
T ss_dssp HHHHHHHHSBTTTS
T ss_pred HHHHHhhhhhccCC
Confidence 33334445554443
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.94 E-value=1.1e+02 Score=21.69 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=4.5
Q ss_pred HHHhhhcCCCc
Q 011875 448 LACCKAYGPFK 458 (475)
Q Consensus 448 ~~~~~~y~~~~ 458 (475)
..+..+|++++
T Consensus 48 ~~~~~~~r~~~ 58 (100)
T d3dtub2 48 LYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHBTTT
T ss_pred HHHhhhhhccC
Confidence 33334444443
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=9.18 E-value=1.1e+02 Score=16.71 Aligned_cols=20 Identities=15% Similarity=0.798 Sum_probs=14.3
Q ss_pred CCccchhHHHHHHHHHHHHHH
Q 011875 103 LGWKVGFGVPAVIMLLSALSF 123 (475)
Q Consensus 103 ~g~~~~F~i~~v~~~~~~ivf 123 (475)
-|| ++|.++.+.++++++.+
T Consensus 14 kgw-lafslamlfvfialiay 33 (34)
T d1xmeb2 14 KGW-LAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHH-HHHHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHHHhc
Confidence 454 78888888777777654
No 10
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.31 E-value=1.3e+02 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=10.0
Q ss_pred CCCCCCCCCccccC
Q 011875 462 GTAFDDKDGMEEEC 475 (475)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (475)
+..|++...||..|
T Consensus 26 g~~DC~DgsDE~~C 39 (42)
T d1cr8a_ 26 GDTDCMDSSDEKSC 39 (42)
T ss_dssp SSCCSSSSTTTTTC
T ss_pred CcCcCCCcchhccC
Confidence 66777777777766
Done!