BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011877
(475 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449443528|ref|XP_004139529.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Cucumis sativus]
gi|449505551|ref|XP_004162505.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Cucumis sativus]
Length = 478
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/478 (78%), Positives = 428/478 (89%), Gaps = 3/478 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQVSTSSKQ-QAEPVKISLK 57
MSEKFS TLRIGDL+DFIAPSQ C+VSLK KAT PDK +VS S Q +AEPVKISLK
Sbjct: 1 MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATATKPDKVEVSASRMQLKAEPVKISLK 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
DCLACSGC+TSAETVMLEKQSLDEFLSN+NKGK VI+SLSPQSRASLA HFGISPL+VFK
Sbjct: 61 DCLACSGCVTSAETVMLEKQSLDEFLSNLNKGKVVIVSLSPQSRASLAVHFGISPLKVFK 120
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
KLTTF KS+GVK+IFDTSCSRDLTLIEACNEFIARY+ SQ+ ++E+ SS+PM+SSACPG
Sbjct: 121 KLTTFFKSMGVKAIFDTSCSRDLTLIEACNEFIARYRNSQQDNEEKCKSSVPMISSACPG 180
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
WICYAEKQ GSYILPYISSVKSPQQ IG+ +KHH+CQKLG R D++YHVTVMPCYDKKLE
Sbjct: 181 WICYAEKQHGSYILPYISSVKSPQQMIGSIVKHHMCQKLGIRSDDVYHVTVMPCYDKKLE 240
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
AAREDFVFQLDS +T E I EVDSVLT+GEVL+LIQ+K V+F++LEESPLD+MLT
Sbjct: 241 AAREDFVFQLDSANKTLEAEAHRITEVDSVLTSGEVLELIQMKEVDFKSLEESPLDRMLT 300
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
NV++EGHL+GV+GSSGGYAET+FRHAAK LFGK IEG LEFK IRNSDF+E+ LEVEGKT
Sbjct: 301 NVNEEGHLFGVSGSSGGYAETIFRHAAKILFGKDIEGPLEFKLIRNSDFQELTLEVEGKT 360
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
LLKFALCYGF+NLQN+VRK+K KCDY F+E+MACPSGCLNGGGQIKPKPGQSPK+LI+
Sbjct: 361 LLKFALCYGFRNLQNVVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIEL 420
Query: 418 LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE Y ENV++ DPF NP+V+ +Y EWLE+PGSEKAKKH+HTEYHPVVKSITAQLHNW
Sbjct: 421 LEAAYQENVLMRDPFDNPVVKEIYKEWLEEPGSEKAKKHLHTEYHPVVKSITAQLHNW 478
>gi|224086530|ref|XP_002307904.1| predicted protein [Populus trichocarpa]
gi|222853880|gb|EEE91427.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/480 (78%), Positives = 431/480 (89%), Gaps = 7/480 (1%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP-----DKPQVSTSSKQQAEPVKIS 55
MSEKFSPTLRIGDLSDFIAPSQ CVVSLK P DKP+V+ ++++Q +PVKIS
Sbjct: 1 MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLKTTTPNTRKRDKPEVAIANREQNDPVKIS 60
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV 115
LKDCLACSGCITSAETVMLEKQSLDEFLSNI+KGKA+I+SLSPQSRASLA +FGISPLQV
Sbjct: 61 LKDCLACSGCITSAETVMLEKQSLDEFLSNIDKGKAIIVSLSPQSRASLAFYFGISPLQV 120
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
FKKLTTF KSLGVK++FDTSCSRDLTL+E CNEF+ RYKQSQ + DE+SN SLPMLSSAC
Sbjct: 121 FKKLTTFFKSLGVKAVFDTSCSRDLTLVETCNEFLCRYKQSQLNIDEKSNPSLPMLSSAC 180
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWICYAEKQLGSYILPY+SSVKSPQQTIGATIKHHICQK+G RPDE+YHVTVMPCYDKK
Sbjct: 181 PGWICYAEKQLGSYILPYVSSVKSPQQTIGATIKHHICQKMGLRPDEVYHVTVMPCYDKK 240
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
LEAAR DFVF++ ++E L I EVDSVLTTGEVLDLI+LKAV+ E L++SPLDKM
Sbjct: 241 LEAARGDFVFEV--EQEDANKNSLRITEVDSVLTTGEVLDLIKLKAVDIETLDDSPLDKM 298
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
LTNV +EG+LYGV GSSGGYAETV R+AA+ +FG+ IEG L F+++RN+DF EV LEV+G
Sbjct: 299 LTNVSEEGYLYGVPGSSGGYAETVLRYAARMVFGREIEGPLAFRSLRNNDFCEVTLEVDG 358
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
K +LKFALCYGFQNLQNIVRKVKM +CDY FVE+MACPSGCLNGGGQIKPKP QSP+EL+
Sbjct: 359 KVVLKFALCYGFQNLQNIVRKVKMGRCDYHFVEIMACPSGCLNGGGQIKPKPQQSPRELL 418
Query: 416 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++LETIY+EN+++ DPF+NPLV+SLYDEWL+QPGSEKAK+H+HTEYHPVVKS+TAQLHNW
Sbjct: 419 QSLETIYMENILVKDPFENPLVKSLYDEWLDQPGSEKAKRHMHTEYHPVVKSVTAQLHNW 478
>gi|224139480|ref|XP_002323132.1| predicted protein [Populus trichocarpa]
gi|222867762|gb|EEF04893.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/475 (78%), Positives = 431/475 (90%), Gaps = 4/475 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
MSEKFSPTLRIGDLSDFIAPSQ CVVSLK P+ V+ ++K+Q +PVKISLKDCL
Sbjct: 1 MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLKTTAPN--TVAIANKEQTDPVKISLKDCL 58
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
ACSGCITSAETVMLEKQSLD+FLSNI+KGKA+I+SLSPQSRASLA +FGISPLQVFKKLT
Sbjct: 59 ACSGCITSAETVMLEKQSLDDFLSNIDKGKAIIVSLSPQSRASLAVYFGISPLQVFKKLT 118
Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
TF KSLGVK++FDTS SRDLTLIE CNEF+ RYKQSQ +++E+SNS+LPMLSSACPGWIC
Sbjct: 119 TFFKSLGVKAVFDTSSSRDLTLIETCNEFVNRYKQSQLNNNEKSNSALPMLSSACPGWIC 178
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEKQLGSY+LP+ISSVKSPQQTIGATIKHHICQK+G RPDE+YHVTVMPCYDKKLEA R
Sbjct: 179 YAEKQLGSYVLPFISSVKSPQQTIGATIKHHICQKMGLRPDEVYHVTVMPCYDKKLEAVR 238
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
+DFVF++ ++E GL I EVDSVLTTGEVLDLI+ KAV+FE L++SPLDKMLTNV
Sbjct: 239 DDFVFEV--EQEDANKNGLRIAEVDSVLTTGEVLDLIKFKAVDFETLDDSPLDKMLTNVS 296
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 360
+EG+LYGVAGSSGGYA+TVFR+AA+ L+G+ IEG L FK++RN DFREV LEV+GK +LK
Sbjct: 297 EEGYLYGVAGSSGGYADTVFRNAARMLYGREIEGPLAFKSLRNMDFREVTLEVDGKVVLK 356
Query: 361 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 420
FALCYGFQNLQNIVRKVK+ KCDY FVEVMACPSGCLNGGGQIKPKP QSPKEL+++LET
Sbjct: 357 FALCYGFQNLQNIVRKVKIGKCDYHFVEVMACPSGCLNGGGQIKPKPQQSPKELLQSLET 416
Query: 421 IYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
IY+ENV++ DPF+N LV+SLYDEWLE+PGSEKAK+H+HTEYHP+VKS+TAQLHNW
Sbjct: 417 IYMENVLIKDPFENLLVKSLYDEWLEKPGSEKAKRHMHTEYHPMVKSVTAQLHNW 471
>gi|255563810|ref|XP_002522906.1| electron transporter, putative [Ricinus communis]
gi|223537891|gb|EEF39506.1| electron transporter, putative [Ricinus communis]
Length = 475
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/465 (81%), Positives = 421/465 (90%), Gaps = 2/465 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
MSEKFSPTLRIGDLSDFIAPSQ CVVSLK N KP+V S+KQQ+EPVKISLKDCL
Sbjct: 1 MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLK-SNSKKPEVRVSNKQQSEPVKISLKDCL 59
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
ACSGCITSAETVMLEKQSLDEFLSNI+KGKAV+ISLSPQSRASLA HF ISP QVFKKLT
Sbjct: 60 ACSGCITSAETVMLEKQSLDEFLSNIDKGKAVVISLSPQSRASLAAHFDISPPQVFKKLT 119
Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
TF KSLGVK++FDTS SRD+TLIE CNEFI RYKQSQ +DDERS S+LPMLSSACPGWIC
Sbjct: 120 TFFKSLGVKAVFDTSSSRDITLIETCNEFITRYKQSQSNDDERSKSALPMLSSACPGWIC 179
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEKQLGSYILPYIS VKSPQQ +GATIKH ICQK+G RPDE+YHVTVMPCYDKKLEA R
Sbjct: 180 YAEKQLGSYILPYISPVKSPQQIVGATIKHQICQKMGLRPDEVYHVTVMPCYDKKLEAVR 239
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
+DFV +L+SQEE D + I EVDSVLT+GEVLDLI+LKAV+F ALEESPLD+M +NV+
Sbjct: 240 DDFVIELESQEEN-GDSLVRIAEVDSVLTSGEVLDLIKLKAVDFPALEESPLDRMFSNVN 298
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 360
+EGHLYGV+GSSGGYAETVFR+A KTLFG I G L FKTIRN+DFREV LEV+G LLK
Sbjct: 299 EEGHLYGVSGSSGGYAETVFRNATKTLFGIEINGPLTFKTIRNTDFREVTLEVDGHVLLK 358
Query: 361 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 420
FALCYGFQNLQNIVRK+KM+KCDY FVEVMACPSGCLNGGGQIKPKPGQSPK+L+++LET
Sbjct: 359 FALCYGFQNLQNIVRKIKMQKCDYHFVEVMACPSGCLNGGGQIKPKPGQSPKDLLQSLET 418
Query: 421 IYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
IY+ENV++ADPF+NPL++SLYDEWLE+PGSEKAK+++HTEYHPVV
Sbjct: 419 IYMENVLVADPFENPLIKSLYDEWLEEPGSEKAKRYLHTEYHPVV 463
>gi|359496948|ref|XP_003635380.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Vitis
vinifera]
gi|297744923|emb|CBI38438.3| unnamed protein product [Vitis vinifera]
Length = 478
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/478 (76%), Positives = 430/478 (89%), Gaps = 3/478 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQVSTSSKQ-QAEPVKISLK 57
MSEKFS TLRIGDL+DFIAPSQ CVVSLK KA P+K +V T +K EPVKISLK
Sbjct: 1 MSEKFSATLRIGDLNDFIAPSQGCVVSLKGLKAAPAKPEKAEVVTGTKSANTEPVKISLK 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
DCLACSGCITSAETVMLEKQS+DEFL NINKGKAVI+SLSPQSRAS A HFG+SPLQV +
Sbjct: 61 DCLACSGCITSAETVMLEKQSMDEFLFNINKGKAVIVSLSPQSRASFAIHFGLSPLQVLR 120
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
KLTTF KSLGVK++FDTSCSRDL+LIE+CN FI+RYKQ ++DE+ +SLPMLSSACPG
Sbjct: 121 KLTTFFKSLGVKAVFDTSCSRDLSLIESCNAFISRYKQHHSTEDEKCKTSLPMLSSACPG 180
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
WICYAEK LGSYILPYISSVKSPQQTIG TIK+++CQK+GFRPDE+YHV+VMPCYDKKLE
Sbjct: 181 WICYAEKTLGSYILPYISSVKSPQQTIGVTIKNYLCQKMGFRPDEVYHVSVMPCYDKKLE 240
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
AAR+DFVF++DS + + GL I EVDSVLT+GEVL+LIQLK+V+F+ LEESPLD++LT
Sbjct: 241 AARDDFVFEVDSPGGVHENTGLRITEVDSVLTSGEVLELIQLKSVDFKNLEESPLDRLLT 300
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
NV++EGHLYGV GSSGGYA+T+FR+AAKTLFG+ ++G L+FKT+RNSDFREV LE+EG+T
Sbjct: 301 NVNEEGHLYGVQGSSGGYADTIFRYAAKTLFGRELKGPLDFKTVRNSDFREVTLEIEGQT 360
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
+LKFALCYGF+NLQNIVRK+K+ KCDY F+EVMACPSGCLNGGGQIKPK GQS K+LI++
Sbjct: 361 MLKFALCYGFRNLQNIVRKIKIGKCDYHFLEVMACPSGCLNGGGQIKPKAGQSAKDLIQS 420
Query: 418 LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE IY+ENV++ADPFKNP+V+ LYDEWLEQPGSEKAK+ +HTEYHPVVKSIT+QLHNW
Sbjct: 421 LEAIYMENVVVADPFKNPIVKGLYDEWLEQPGSEKAKRLIHTEYHPVVKSITSQLHNW 478
>gi|297800500|ref|XP_002868134.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313970|gb|EFH44393.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 474
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/479 (74%), Positives = 414/479 (86%), Gaps = 9/479 (1%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQVSTSSKQQAEPVKISLKD 58
MSEKFSPTLR+GDL+DFIAPSQ CV+SLK K K D+PQV + KQQ EPVKISLKD
Sbjct: 1 MSEKFSPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQQLEPVKISLKD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKK 118
CLACSGCITSAETVMLEKQSLDEFLS ++KGK VI+S+SPQSRASLA H+ ISPLQVFKK
Sbjct: 61 CLACSGCITSAETVMLEKQSLDEFLSALSKGKDVIVSISPQSRASLAVHYEISPLQVFKK 120
Query: 119 LTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
LTTFLKSLGVK++FDTSCSRDL LIEACNEF++RYKQ+ D E S S LP+LSSACPGW
Sbjct: 121 LTTFLKSLGVKAVFDTSCSRDLVLIEACNEFVSRYKQANSDDGENSQSPLPVLSSACPGW 180
Query: 179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
ICYAEKQLGSY+LPY+SSVKSPQQ IGA IKHH+CQ LG R E+YHVT MPCYDKKLEA
Sbjct: 181 ICYAEKQLGSYVLPYVSSVKSPQQAIGAAIKHHLCQALGLRLQEVYHVTAMPCYDKKLEA 240
Query: 239 AREDFVFQLDSQEETYRDEG-LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
AR+DFVF E+ +D G L++ EVDSVLTTGE+LDLI+LK V+F+ LEESPLD+MLT
Sbjct: 241 ARDDFVF-----EDGAQDNGSLKLTEVDSVLTTGEILDLIKLKGVDFKDLEESPLDRMLT 295
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
NV +EGHLYGVAGSSGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L++EGKT
Sbjct: 296 NVTEEGHLYGVAGSSGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQLEGKT 355
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
+LKFALCYGFQNLQNIVR+VK RKCDY +VE+MACP+GCLNGGGQIKPK GQS KELI +
Sbjct: 356 VLKFALCYGFQNLQNIVRRVKTRKCDYHYVEIMACPAGCLNGGGQIKPKTGQSQKELINS 415
Query: 418 LETIYLENVML-ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE Y+ + L DP++NP + LY+EWL++PGS +AKK +HT+YHPVVKS+T+QL+NW
Sbjct: 416 LEATYMNDTTLNTDPYQNPTAKRLYEEWLKEPGSNEAKKFLHTQYHPVVKSVTSQLNNW 474
>gi|356522067|ref|XP_003529671.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Glycine max]
Length = 474
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/476 (73%), Positives = 419/476 (88%), Gaps = 3/476 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ-QAEPVKISLKDC 59
MSEKFS LRIGDL+D+IAPSQ C+VSLK K DKP+VS ++KQ EPVKISLKDC
Sbjct: 1 MSEKFSAALRIGDLNDYIAPSQACIVSLK--GLKKNDKPEVSIANKQVNFEPVKISLKDC 58
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGC+TSAETVMLEKQSLDEFL+NIN GKAVI+SLSPQSRAS+A HFGISP+Q FKKL
Sbjct: 59 LACSGCVTSAETVMLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAVHFGISPIQAFKKL 118
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F KSLGVK++FDTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACPGWI
Sbjct: 119 TRFFKSLGVKAVFDTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWI 178
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEKQLGS++LPYISSVKSPQQT+GA IK+++CQ+LG RP+E+YHVTVMPCYDKKLEAA
Sbjct: 179 CYAEKQLGSFVLPYISSVKSPQQTVGAIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAA 238
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
R+DFVFQ +S E E I EVDSVLTTGEVL+LIQ K V+F++LEE+PLDK+LTN+
Sbjct: 239 RDDFVFQFESHVEGLESEINMISEVDSVLTTGEVLELIQSKEVDFKSLEETPLDKILTNI 298
Query: 300 DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLL 359
++EG+LYGV GSSGGYAET+FR+AAKTLFG+ I+ L F+ IRNSDF+EV LEVEGKT+L
Sbjct: 299 NEEGYLYGVHGSSGGYAETIFRYAAKTLFGRQIDDPLTFRNIRNSDFQEVTLEVEGKTVL 358
Query: 360 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 419
KFALCYGF+NLQNIVRK+K KCDY F+E+MACPSGCLNGGGQIKP GQSPKEL + LE
Sbjct: 359 KFALCYGFRNLQNIVRKLKNGKCDYHFLEIMACPSGCLNGGGQIKPNSGQSPKELSQLLE 418
Query: 420 TIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++Y+ENV++A PF NP+++ LYD+WLEQPGS KA++++HT+YHPV KSIT+QLHNW
Sbjct: 419 SVYMENVLVASPFDNPIIKGLYDKWLEQPGSVKARRYMHTQYHPVEKSITSQLHNW 474
>gi|356562481|ref|XP_003549499.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Glycine max]
Length = 474
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/476 (74%), Positives = 418/476 (87%), Gaps = 3/476 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ-QAEPVKISLKDC 59
MSEKFS LRIGDL+DFIAPSQ C+VSLK K DKP+VS + KQ + EPVKISLKDC
Sbjct: 1 MSEKFSAALRIGDLNDFIAPSQACIVSLK--GLKKNDKPEVSNAIKQVKFEPVKISLKDC 58
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGC+TSAETVMLEKQSLDEFL+NIN GKAVI+SLSPQSRAS+A HFGISP+Q FKKL
Sbjct: 59 LACSGCVTSAETVMLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAFHFGISPIQAFKKL 118
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F KSLGVK+IFDTSCSRDLTL+E+C EFI RY+Q+Q +DERS SSLPM++SACPGWI
Sbjct: 119 TRFFKSLGVKAIFDTSCSRDLTLVESCVEFITRYRQNQVVEDERSKSSLPMIASACPGWI 178
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEKQLGS++LPYISSVKSPQQTIG IK+++CQ+LG RP+E+YHVTVMPCYDKKLEAA
Sbjct: 179 CYAEKQLGSFVLPYISSVKSPQQTIGVIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAA 238
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
R+DFVFQ +S E E I EVDSVLTTGEVL+LIQ K V+F++L+E+ LDK+LTN+
Sbjct: 239 RDDFVFQFESHAEGRESEINMISEVDSVLTTGEVLELIQSKEVDFKSLDETTLDKILTNI 298
Query: 300 DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLL 359
+++G+LYGV+GSSGGYAET+FR+AAKTLFG+ I+G L FK IRNSDF+EV LEVEGKT+L
Sbjct: 299 NEDGYLYGVSGSSGGYAETIFRYAAKTLFGRQIDGPLTFKNIRNSDFQEVTLEVEGKTVL 358
Query: 360 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 419
KFALCYGF+NLQNIVRK+K KCDY F+E+MACPSGCLNGGGQIKP GQSPKEL + LE
Sbjct: 359 KFALCYGFRNLQNIVRKLKTGKCDYHFLEIMACPSGCLNGGGQIKPSSGQSPKELSQLLE 418
Query: 420 TIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++Y+ENV++A PF NP+V+ LYD+WLEQPGS KA +++HT+YHPV KSIT+QLHNW
Sbjct: 419 SVYMENVLVASPFDNPIVKGLYDKWLEQPGSVKAGRYMHTQYHPVEKSITSQLHNW 474
>gi|255647952|gb|ACU24433.1| unknown [Glycine max]
Length = 474
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/476 (74%), Positives = 417/476 (87%), Gaps = 3/476 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ-QAEPVKISLKDC 59
MSEKFS LRIGDL+DFIAPSQ C+VSLK K DKP+VS + KQ + EPVKISLKDC
Sbjct: 1 MSEKFSAALRIGDLNDFIAPSQACIVSLK--GLKKNDKPEVSNAIKQVKFEPVKISLKDC 58
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGC+TSAETVMLEKQSLDEFL+NIN GKAVI+SLSPQSRAS+A HFGISP+Q FKKL
Sbjct: 59 LACSGCVTSAETVMLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAFHFGISPIQAFKKL 118
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F KSLGVK+IFDTSCSRDLTL+E+C EFI RY+Q+Q +DERS SSLPM++SACPGWI
Sbjct: 119 TRFFKSLGVKAIFDTSCSRDLTLVESCVEFITRYRQNQVVEDERSKSSLPMIASACPGWI 178
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEKQLGS++LPYISSVKSPQQTIG IK+++CQ+LG RP+E+YHVTVMPCYDKKLEAA
Sbjct: 179 CYAEKQLGSFVLPYISSVKSPQQTIGVIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAA 238
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
R+DFVFQ +S E E I EVDSVLTTGEVL+LIQ K V+F++L+E+ LDK+LTN+
Sbjct: 239 RDDFVFQFESHAEGRESEINMISEVDSVLTTGEVLELIQSKEVDFKSLDETTLDKILTNI 298
Query: 300 DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLL 359
+++G+LYGV+GSSGGYAET+FR+AAKTLFG+ I+G L FK IRNSDF+EV LEVEGKT+L
Sbjct: 299 NEDGYLYGVSGSSGGYAETIFRYAAKTLFGRQIDGPLTFKNIRNSDFQEVTLEVEGKTVL 358
Query: 360 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 419
KFALCYGF+NLQNIVRK+K KCDY F+E+MACPSGCLNGGGQIKP GQSPKEL + LE
Sbjct: 359 KFALCYGFRNLQNIVRKLKTGKCDYHFLEIMACPSGCLNGGGQIKPSSGQSPKELSQLLE 418
Query: 420 TIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++Y+ENV++A PF NP+V+ LYD+WLEQPGS KA +++HT+YHPV KSIT QLHNW
Sbjct: 419 SVYMENVLVASPFDNPIVKGLYDKWLEQPGSVKAGRYMHTQYHPVEKSITFQLHNW 474
>gi|240255938|ref|NP_567496.4| ferredoxin hydrogenase [Arabidopsis thaliana]
gi|15020824|emb|CAC44620.1| Narf-like protein [Arabidopsis thaliana]
gi|332658348|gb|AEE83748.1| ferredoxin hydrogenase [Arabidopsis thaliana]
Length = 474
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/478 (73%), Positives = 415/478 (86%), Gaps = 7/478 (1%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQVSTSSKQQAEPVKISLKD 58
MSEKFSPTLR+GDL+DFIAPSQ CV+SLK K K D+PQV + KQQ EPVKISLKD
Sbjct: 1 MSEKFSPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQQLEPVKISLKD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKK 118
CLACSGCITSAETVMLEKQSLDEFLS ++KGK V++S+SPQSRASLA H+ ISPLQVFKK
Sbjct: 61 CLACSGCITSAETVMLEKQSLDEFLSALSKGKDVVVSVSPQSRASLAVHYDISPLQVFKK 120
Query: 119 LTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
LTTFLKSLGVK++FDTSCSRDL LIE+CNEF++RYKQ+ D E S S LP+LSSACPGW
Sbjct: 121 LTTFLKSLGVKAVFDTSCSRDLVLIESCNEFVSRYKQANSDDGENSQSPLPVLSSACPGW 180
Query: 179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
ICYAEKQLGSY+LPY+SSVKSPQQ IGA IKHH+CQ LG R E+YHVTVMPCYDKKLEA
Sbjct: 181 ICYAEKQLGSYVLPYVSSVKSPQQAIGAAIKHHLCQALGLRLHEVYHVTVMPCYDKKLEA 240
Query: 239 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN 298
AR+DFVF +Q+ + L++ EVDSVLTTGE++DLI+LK V+F+ LEESPLD++LTN
Sbjct: 241 ARDDFVFDDGTQD----NGDLKLTEVDSVLTTGEIMDLIKLKGVDFKDLEESPLDRVLTN 296
Query: 299 VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL 358
V +EG LYGVAGSSGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L++EGKT+
Sbjct: 297 VTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQLEGKTV 356
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 418
LKFALCYGFQNLQNIVR+VK RKCDYQ+VE+MACP+GCLNGGGQIKPK GQS KELI +L
Sbjct: 357 LKFALCYGFQNLQNIVRRVKTRKCDYQYVEIMACPAGCLNGGGQIKPKTGQSQKELIHSL 416
Query: 419 ETIYLENVML-ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
E Y+ + L DP++NP + L++EWL++PGS +AKK++HT+YHPVVKS+T+QL+NW
Sbjct: 417 EATYMNDTTLNTDPYQNPTAKRLFEEWLKEPGSNEAKKYLHTQYHPVVKSVTSQLNNW 474
>gi|357467417|ref|XP_003603993.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
gi|355493041|gb|AES74244.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
Length = 483
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/479 (72%), Positives = 413/479 (86%), Gaps = 4/479 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTSSKQ-QAEPVKISL 56
MSEKFSP LRIGDL+DFIAPSQ C+VSLK K K PDK +VS + +Q ++EPVKISL
Sbjct: 5 MSEKFSPALRIGDLNDFIAPSQACIVSLKGFNKTDKKKPDKVEVSIADRQVKSEPVKISL 64
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
KDCLACSGC+TSAETVMLEKQ LDEFLSNINKGKAVI+S+SPQSR S+A HFGISP+Q F
Sbjct: 65 KDCLACSGCVTSAETVMLEKQGLDEFLSNINKGKAVIVSVSPQSRTSIATHFGISPVQAF 124
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
KKLT F KSLGV++IFDTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACP
Sbjct: 125 KKLTRFFKSLGVRAIFDTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACP 184
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GWICYAEKQLGS++LPYISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKL
Sbjct: 185 GWICYAEKQLGSFVLPYISSVKSPQQTIGTIIKRYVCQDMELRPEEVYHVTVMPCYDKKL 244
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA+R+DFVFQLD E + E I EVDSVLTTGE+L+L+Q K V+F++LEE+PLDK+L
Sbjct: 245 EASRDDFVFQLDPHAEGHEGEVNMISEVDSVLTTGEILELVQSKEVDFKSLEEAPLDKLL 304
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 356
TNV++EG LYGV GSSGGYAET+FR+AAKTLFG+ I+G L+F+ IRNSDF+EV LEVEG+
Sbjct: 305 TNVNEEGDLYGVRGSSGGYAETIFRYAAKTLFGRHIDGPLDFRNIRNSDFQEVTLEVEGE 364
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
T+LKFALCYGF+NLQN VRK+K K DY F+E+MACPSGCLNGGGQIKP GQS KEL
Sbjct: 365 TVLKFALCYGFRNLQNTVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPVSGQSAKELSH 424
Query: 417 TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE++Y+ENV+ A+PF NP+++ LYD WLEQPGSEKA++ +HT+YH V KSIT+QLHNW
Sbjct: 425 LLESVYMENVLPAEPFDNPIIKGLYDNWLEQPGSEKARRFMHTQYHAVKKSITSQLHNW 483
>gi|16754852|emb|CAD10687.1| Narf-like protein [Medicago truncatula]
Length = 479
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/479 (72%), Positives = 412/479 (86%), Gaps = 4/479 (0%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTSSKQ-QAEPVKISL 56
MSEKFSP LRIGDL+DFIAPSQ C+VSLK K K PDK +VS + +Q ++EPVKISL
Sbjct: 1 MSEKFSPALRIGDLNDFIAPSQACIVSLKGFNKTDKKKPDKVEVSIADRQVKSEPVKISL 60
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
KDCLACSGC+TSAETVMLEKQ LDEFLSNINKGKAVI+S+SPQSR S+A HFGIS +Q F
Sbjct: 61 KDCLACSGCVTSAETVMLEKQGLDEFLSNINKGKAVIVSVSPQSRTSIATHFGISAVQAF 120
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
KKLT F KSLGV++IFDTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACP
Sbjct: 121 KKLTRFFKSLGVRAIFDTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACP 180
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GWICYAEKQLGS++LPYISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKL
Sbjct: 181 GWICYAEKQLGSFVLPYISSVKSPQQTIGTIIKRYVCQDMELRPEEVYHVTVMPCYDKKL 240
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA+R+DFVFQLD E + E I EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK+L
Sbjct: 241 EASRDDFVFQLDPHAEGHEGEVNMISEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLL 300
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 356
TNV++EG LYGV GSSGGYAET+FR+AAKTLFG+ I+G L+F+ IRNSDF+EV LEVEG+
Sbjct: 301 TNVNEEGDLYGVRGSSGGYAETIFRYAAKTLFGRHIDGPLDFRNIRNSDFQEVTLEVEGE 360
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
T+LKFALCYGF+NLQN VRK+K K DY F+E+MACPSGCLNGGGQIKP GQS KEL
Sbjct: 361 TVLKFALCYGFRNLQNTVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPVSGQSAKELSH 420
Query: 417 TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE++Y+ENV+ A+PF NP+++ LYD WLEQPGSEKA++ +HT+YH V KSIT+QLHNW
Sbjct: 421 LLESVYMENVLPAEPFDNPIIKGLYDNWLEQPGSEKARRFMHTQYHAVKKSITSQLHNW 479
>gi|289540933|gb|ADD09604.1| ferredoxin hydrogenase [Trifolium repens]
Length = 495
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/497 (69%), Positives = 416/497 (83%), Gaps = 24/497 (4%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ-QAEPVKISLKDC 59
MSEKFSP LRIGDL+DFIAPSQ C+VSL K PDK +VS + ++ + EPVKISLKDC
Sbjct: 1 MSEKFSPALRIGDLNDFIAPSQACIVSLNGK--KKPDKVEVSIADREVKLEPVKISLKDC 58
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGC+TSAETVMLEKQ LDEF+S I+KGKAVI+S+SPQSRAS+A HFG+SPLQ FKKL
Sbjct: 59 LACSGCVTSAETVMLEKQGLDEFMSTISKGKAVIVSVSPQSRASIAAHFGVSPLQAFKKL 118
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F KSLGV++IFDTSCSRDLTL+E+C EFI RY+QSQ DDERSNSSLPM++SACPGWI
Sbjct: 119 TRFFKSLGVRAIFDTSCSRDLTLVESCLEFITRYRQSQLIDDERSNSSLPMIASACPGWI 178
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEK+LGS++LPYISSVKSPQQTIG IK ++CQ + RP+E++HVTVMPCYDKKLEA+
Sbjct: 179 CYAEKKLGSFVLPYISSVKSPQQTIGTIIKRYVCQDMELRPEEVHHVTVMPCYDKKLEAS 238
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
R+DFVFQL+ + E I EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK+LTN+
Sbjct: 239 RDDFVFQLEPHADGSEGEVNMISEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLLTNI 298
Query: 300 DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE------- 352
+DEG+LYGV GSSGGYAET+FR+AAKTLFG+ I+G L F+ IRNSDF+EV LE
Sbjct: 299 NDEGYLYGVRGSSGGYAETIFRYAAKTLFGRHIDGPLNFRNIRNSDFQEVTLEASRATSF 358
Query: 353 --------------VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
VEG+T+LKFALCYGF+NLQNIVRK+K K DY F+E+MACPSGCLN
Sbjct: 359 VIIFISVLIPKSGFVEGETVLKFALCYGFRNLQNIVRKLKTGKYDYHFLEIMACPSGCLN 418
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQIKP PGQS K+L + LE++YLENV+ ADPF NP+++ LYD+WLEQPGSEKAK+++H
Sbjct: 419 GGGQIKPIPGQSAKQLSQLLESVYLENVLAADPFDNPIIKGLYDKWLEQPGSEKAKRYMH 478
Query: 459 TEYHPVVKSITAQLHNW 475
T+YHP+ KS+T+QLHNW
Sbjct: 479 TQYHPIEKSVTSQLHNW 495
>gi|357472589|ref|XP_003606579.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
gi|355507634|gb|AES88776.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
Length = 570
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/482 (67%), Positives = 407/482 (84%), Gaps = 11/482 (2%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ-QAEPVKISLKDC 59
MSEKFSP LRIGD++DFI PSQ C VSLK+ K PDK +V + +Q +++PVKISLKDC
Sbjct: 93 MSEKFSPALRIGDVNDFIVPSQACTVSLKERRLKKPDKVEVKVADRQVKSKPVKISLKDC 152
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGC+TSAETV+L Q LDEFLSNIN+GK VI+S+SPQSRAS+A HF ISPLQVFKKL
Sbjct: 153 LACSGCVTSAETVLLNNQGLDEFLSNINEGKTVIVSVSPQSRASIAAHFRISPLQVFKKL 212
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F KSLGV+++FDTSCSRDLTL+E+C EF++RY+++Q DDERS SSLPM+SSACPG I
Sbjct: 213 TRFFKSLGVRAVFDTSCSRDLTLVESCVEFVSRYRKNQFVDDERSKSSLPMISSACPGLI 272
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEK GS +LPYISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+
Sbjct: 273 CYAEKSHGSVLLPYISSVKSPQQTIGTIIKRYLCQDMELRPEEVYHVTVMPCYDKKLEAS 332
Query: 240 REDFVFQLDSQEETYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
R+DFVFQL E++ DEG E + EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK
Sbjct: 333 RDDFVFQL----ESHFDEGREGEVNRVLEVDSVLTTGEILELIQSKEVDFKSLEEAPLDK 388
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+L+N+++EGHLYGV GSSGGYAET+FR+AAKTLFG+ I+G L F+ I+NSD++EV LEV+
Sbjct: 389 LLSNINEEGHLYGVRGSSGGYAETIFRYAAKTLFGRHIDGPLNFRNIKNSDYQEVTLEVD 448
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+T+LKFALCYGF NLQ + K+K+ K DY F+E+MACPSGCLNG GQIKP GQS KEL
Sbjct: 449 GETVLKFALCYGFSNLQKNIPKLKVGKSDYHFLEIMACPSGCLNGAGQIKPISGQSAKEL 508
Query: 415 IKTLETIYLENVM-LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH 473
+ LE++Y+ENV+ + +PF NP+++ LYD+WL QPGSEKA+ ++HT+YHPV KSIT++LH
Sbjct: 509 SQLLESVYMENVLAIEEPFDNPIIKGLYDKWLGQPGSEKARSYMHTQYHPVQKSITSELH 568
Query: 474 NW 475
NW
Sbjct: 569 NW 570
>gi|84794308|emb|CAJ55835.1| hypothetical protein [Medicago truncatula]
Length = 478
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/482 (67%), Positives = 406/482 (84%), Gaps = 11/482 (2%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ-QAEPVKISLKDC 59
MSEKFSP LRIGD++DFI PSQ C VSLK+ K PDK +V + +Q +++PVKISLKDC
Sbjct: 1 MSEKFSPALRIGDVNDFIVPSQACTVSLKERRLKKPDKVEVKVADRQVKSKPVKISLKDC 60
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGC+TSAETV+L Q LDEFLSNIN+GK VI+S+SPQSRAS+A HF ISPLQVFKKL
Sbjct: 61 LACSGCVTSAETVLLNNQGLDEFLSNINEGKTVIVSVSPQSRASIAAHFRISPLQVFKKL 120
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F KSLGV+++FDTSCSRDLTL+E+C EF++RY+++Q DDERS SSLPM+SSACPG I
Sbjct: 121 TRFFKSLGVRAVFDTSCSRDLTLVESCVEFVSRYRKNQFVDDERSKSSLPMISSACPGLI 180
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEK GS +LPYISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+
Sbjct: 181 CYAEKSHGSVLLPYISSVKSPQQTIGTIIKRYLCQDMELRPEEVYHVTVMPCYDKKLEAS 240
Query: 240 REDFVFQLDSQEETYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
R+DFVFQL E++ DEG E + EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK
Sbjct: 241 RDDFVFQL----ESHFDEGREGEVNRVLEVDSVLTTGEILELIQSKEVDFKSLEEAPLDK 296
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+L+N+++EGHLYGV GSSGGYAET+FR+AAKTLFG+ I+G L F+ I+NSD++EV LEV+
Sbjct: 297 LLSNINEEGHLYGVRGSSGGYAETIFRYAAKTLFGRHIDGPLNFRNIKNSDYQEVTLEVD 356
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+T+LKFALCYGF NLQ + K+K+ K DY F+E+MACPSGCLNG GQIKP GQS KEL
Sbjct: 357 GETVLKFALCYGFSNLQKNIPKLKVGKSDYHFLEIMACPSGCLNGAGQIKPISGQSAKEL 416
Query: 415 IKTLETIYLENVM-LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH 473
+ LE++Y+ENV+ + +PF NP+++ LYD+WL QPG EKA+ ++HT+YHPV KSIT++LH
Sbjct: 417 SQLLESVYMENVLAIEEPFDNPIIKGLYDKWLGQPGFEKARSYMHTQYHPVQKSITSELH 476
Query: 474 NW 475
NW
Sbjct: 477 NW 478
>gi|357115639|ref|XP_003559595.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Brachypodium distachyon]
Length = 471
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/478 (67%), Positives = 394/478 (82%), Gaps = 13/478 (2%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----QVSTSSKQQAEPVKISLK 57
S +FSP L+ DL+DFIAPSQ+CV+SL K++ P ++ S+K + VKISLK
Sbjct: 3 SSRFSPALQASDLNDFIAPSQDCVISLNKSSSAARRLPIKQKEIVVSNKPPEDSVKISLK 62
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
DCLACSGCITSAETVMLEKQSLD+F+S IN GKAVI+S+SPQSRASLA FG+S QVF+
Sbjct: 63 DCLACSGCITSAETVMLEKQSLDDFVSRINSGKAVIVSVSPQSRASLAAFFGLSQSQVFR 122
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
KLT KS+GVK+++DTS SRDL LIEACNEFI+RY+ Q S+ + +SLP+LSSACPG
Sbjct: 123 KLTALFKSMGVKAVYDTSSSRDLALIEACNEFISRYQLKQSSNGKEVGTSLPLLSSACPG 182
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
WICYAEK LGSYILPYISSVKSPQQ IGA IKHH+ +KLG +P ++YHVTVMPCYDKKLE
Sbjct: 183 WICYAEKTLGSYILPYISSVKSPQQVIGAAIKHHMVEKLGLKPYDVYHVTVMPCYDKKLE 242
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
A R+DFVF ++ +E I EVDSVLTTGEVLDLIQ K+ +F+ +EESPLD++LT
Sbjct: 243 AVRDDFVFSVEEKE---------ITEVDSVLTTGEVLDLIQSKSFDFKTMEESPLDRLLT 293
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
NVD++GHLYGV+G SGGYAET+FR+AA+ LF + IEG L+FK +RNSDFREV LEV+GK
Sbjct: 294 NVDEDGHLYGVSGGSGGYAETIFRYAARALFNREIEGPLDFKILRNSDFREVTLEVDGKP 353
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
+LKFALCYGF+NLQNIVRK+KM KC+YQF+EVMACPSGCLNGGGQIKP GQS K+LI+
Sbjct: 354 VLKFALCYGFRNLQNIVRKIKMGKCEYQFIEVMACPSGCLNGGGQIKPVKGQSAKDLIQQ 413
Query: 418 LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE +Y+++V +++PF NP+ LYD+WL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 414 LEGVYIQDVSISNPFDNPIATRLYDDWLVQPGSENAKKYLHTKYHPVVKSVASQLQNW 471
>gi|413933075|gb|AFW67626.1| hypothetical protein ZEAMMB73_922832 [Zea mays]
Length = 472
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/479 (65%), Positives = 393/479 (82%), Gaps = 14/479 (2%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQ-----VSTSSKQQAEPVKISL 56
S +FSP L+ DL+DFIAPSQ+C++SL K T + +PQ + SSK E VKISL
Sbjct: 3 SSRFSPALQASDLNDFIAPSQDCIISLNKNTSSSSRRPQNKQKETTVSSKPPEEAVKISL 62
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
KDCLACSGCITSAETVMLEKQSL +F+ IN KAVI+S+SPQSRASLA FG+S QV
Sbjct: 63 KDCLACSGCITSAETVMLEKQSLGDFIDRINSDKAVIVSVSPQSRASLAAFFGLSQSQVL 122
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
+KLT+ KS+GVK++FDTS SRDL+LIEACNEF++RY++SQ S + + ++LP++SSACP
Sbjct: 123 RKLTSLFKSIGVKAVFDTSSSRDLSLIEACNEFVSRYQRSQPSSGQEAGANLPLISSACP 182
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GWICYAEK LGSYILPYISSVKSPQQ IGA IKHH+ ++LG +P +YHVTVMPCYDKKL
Sbjct: 183 GWICYAEKTLGSYILPYISSVKSPQQAIGAAIKHHVAERLGLKPYHVYHVTVMPCYDKKL 242
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA R+DF F +D G E+ EVDSVLTTGEVLDLIQ K+++F+ +EES LD++L
Sbjct: 243 EAVRDDFTFSVD---------GKEVTEVDSVLTTGEVLDLIQSKSIDFKTVEESSLDRLL 293
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 356
TNVD+EGHLYGV+G SGGYAET+FR+ A ++ + IEG L+F+ +RNSDFRE+ LEVEGK
Sbjct: 294 TNVDEEGHLYGVSGGSGGYAETIFRYVAHVIYKREIEGPLDFRILRNSDFREITLEVEGK 353
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
+LKFALCYGF+NLQN+VRK+KM KC+Y F+EVMACPSGCLNGGGQ+KP GQS KELI+
Sbjct: 354 PVLKFALCYGFRNLQNVVRKIKMGKCEYHFIEVMACPSGCLNGGGQLKPVEGQSAKELIQ 413
Query: 417 TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
LE++Y ++++++DPF+NP+ + LYDEWL QPGSE AKK++HTEYHPVVKS+ +QL NW
Sbjct: 414 QLESVYTQDILISDPFRNPIAKKLYDEWLGQPGSENAKKYLHTEYHPVVKSVASQLQNW 472
>gi|115455341|ref|NP_001051271.1| Os03g0748700 [Oryza sativa Japonica Group]
gi|18087682|gb|AAL58974.1|AC091811_23 putative hydrogenase [Oryza sativa Japonica Group]
gi|108711082|gb|ABF98877.1| Narf, putative, expressed [Oryza sativa Japonica Group]
gi|113549742|dbj|BAF13185.1| Os03g0748700 [Oryza sativa Japonica Group]
gi|125545724|gb|EAY91863.1| hypothetical protein OsI_13510 [Oryza sativa Indica Group]
Length = 476
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/475 (65%), Positives = 391/475 (82%), Gaps = 12/475 (2%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKK--ATFKNPDK-PQVSTSSKQQAEPVKISLKDCL 60
+FSP L+ DL+DFIAPSQ+C++SL K + + P K +++ S+ E VKISLKDCL
Sbjct: 11 RFSPALQASDLNDFIAPSQDCIISLNKGPSARRLPIKQKEIAVSTNPPEEAVKISLKDCL 70
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
ACSGCITSAETVMLEKQSL +F++ IN KAVI+S+SPQSRASLA FG+S QVF+KLT
Sbjct: 71 ACSGCITSAETVMLEKQSLGDFITRINSDKAVIVSVSPQSRASLAAFFGLSQSQVFRKLT 130
Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
KS+GVK+++DTS SRDL+LIEAC+EF+ RY Q+Q S + + +LPMLSSACPGWIC
Sbjct: 131 ALFKSMGVKAVYDTSSSRDLSLIEACSEFVTRYHQNQLSSGKEAGKNLPMLSSACPGWIC 190
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK LGS+ILPYIS+VKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R
Sbjct: 191 YAEKTLGSFILPYISAVKSPQQAIGAAIKHHMVGKLGLKPHDVYHVTVMPCYDKKLEAVR 250
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
+DFVF ++ ++ T EVDSVLTTGEVLDLIQ ++V+F+ LEESP+D++LTNVD
Sbjct: 251 DDFVFSVEDKDVT---------EVDSVLTTGEVLDLIQSRSVDFKTLEESPMDRLLTNVD 301
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 360
D+G LYGV+G SGGYAETVFRHAA LF + IEG ++F+ +RNSDFREV LEVEGK +LK
Sbjct: 302 DDGQLYGVSGGSGGYAETVFRHAAHVLFDRKIEGSVDFRILRNSDFREVTLEVEGKPVLK 361
Query: 361 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 420
FALCYGF+NLQNI+RK+KM KC+Y F+EVMACPSGCLNGGGQIKP GQS K+LI+ LE
Sbjct: 362 FALCYGFRNLQNIIRKIKMGKCEYHFIEVMACPSGCLNGGGQIKPAKGQSAKDLIQLLED 421
Query: 421 IYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
+Y+++V +++PF+NP+ + LYDEWL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 422 VYIQDVSVSNPFENPIAKRLYDEWLGQPGSENAKKYLHTKYHPVVKSVASQLQNW 476
>gi|294460159|gb|ADE75662.1| unknown [Picea sitchensis]
Length = 488
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/488 (63%), Positives = 397/488 (81%), Gaps = 13/488 (2%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQV--------STSSKQQA 49
M+ +FS TLR+G+L+D+IAPSQ+C+VSLK KAT K+ + + S
Sbjct: 1 MTGRFSATLRLGNLNDYIAPSQSCIVSLKGGLKATPKSKTQDVLVQIQEKVPPRSDPSIL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHF 108
EPVK++L DCLACSGC+TSAETVMLE+QS++EFLS+I G+ AV++S+SPQSRASLA ++
Sbjct: 61 EPVKVTLHDCLACSGCLTSAETVMLEQQSVNEFLSHIRSGENAVVVSVSPQSRASLATYY 120
Query: 109 GISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
G++PLQVFKKLT FLKSLGVK++FDTSCSRDL+LIEAC EF+ YK ++++ SSL
Sbjct: 121 GLTPLQVFKKLTGFLKSLGVKAVFDTSCSRDLSLIEACEEFVQCYKGQFSGENDQLKSSL 180
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PML+SACPGWICYAEK LG ILPYIS+VKSPQQ +GA IKHH+ +K+G P++IYHVT+
Sbjct: 181 PMLASACPGWICYAEKTLGPCILPYISTVKSPQQAMGAIIKHHVSKKMGLVPEKIYHVTI 240
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDE-GLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
MPCYDKKLEA R+DF+F ++ Q ET ++ G + EVD VLT+GE+LDL ++K ++F++L
Sbjct: 241 MPCYDKKLEAVRDDFIFSVERQGETGQEAAGPRVSEVDCVLTSGEMLDLFKMKNIDFKSL 300
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFR 347
EE+PLD++LTNVDD+GHLYGV G SGGYAET+F +AAK L+GK I+G L+FK +RNSDFR
Sbjct: 301 EEAPLDRLLTNVDDKGHLYGVRGGSGGYAETIFCYAAKQLYGKDIKGPLDFKILRNSDFR 360
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E+ LEV G+ +LK ALCYGF+NLQNIVRK+K K DY FVEVMACP+GCLNGGGQIKP
Sbjct: 361 EIYLEVNGEKVLKVALCYGFRNLQNIVRKIKAGKSDYHFVEVMACPAGCLNGGGQIKPNQ 420
Query: 408 GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
GQS K+LI++LE+ YLE V++ADPF+NPLV+ LYDEWL +PGSEKA K +HTEYH +S
Sbjct: 421 GQSVKDLIQSLESSYLEEVLVADPFENPLVKGLYDEWLGKPGSEKAVKFIHTEYHHRERS 480
Query: 468 ITAQLHNW 475
I ++L NW
Sbjct: 481 IGSELSNW 488
>gi|357467419|ref|XP_003603994.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
gi|355493042|gb|AES74245.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
Length = 403
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 292/403 (72%), Positives = 350/403 (86%)
Query: 73 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 132
MLEKQ LDEFLSNINKGKAVI+S+SPQSR S+A HFGISP+Q FKKLT F KSLGV++IF
Sbjct: 1 MLEKQGLDEFLSNINKGKAVIVSVSPQSRTSIATHFGISPVQAFKKLTRFFKSLGVRAIF 60
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 192
DTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 61 DTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWICYAEKQLGSFVLP 120
Query: 193 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 252
YISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+R+DFVFQLD E
Sbjct: 121 YISSVKSPQQTIGTIIKRYVCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQLDPHAE 180
Query: 253 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 312
+ E I EVDSVLTTGE+L+L+Q K V+F++LEE+PLDK+LTNV++EG LYGV GSS
Sbjct: 181 GHEGEVNMISEVDSVLTTGEILELVQSKEVDFKSLEEAPLDKLLTNVNEEGDLYGVRGSS 240
Query: 313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 372
GGYAET+FR+AAKTLFG+ I+G L+F+ IRNSDF+EV LEVEG+T+LKFALCYGF+NLQN
Sbjct: 241 GGYAETIFRYAAKTLFGRHIDGPLDFRNIRNSDFQEVTLEVEGETVLKFALCYGFRNLQN 300
Query: 373 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 432
VRK+K K DY F+E+MACPSGCLNGGGQIKP GQS KEL LE++Y+ENV+ A+PF
Sbjct: 301 TVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPVSGQSAKELSHLLESVYMENVLPAEPF 360
Query: 433 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
NP+++ LYD WLEQPGSEKA++ +HT+YH V KSIT+QLHNW
Sbjct: 361 DNPIIKGLYDNWLEQPGSEKARRFMHTQYHAVKKSITSQLHNW 403
>gi|302820708|ref|XP_002992020.1| hypothetical protein SELMODRAFT_186507 [Selaginella moellendorffii]
gi|300140142|gb|EFJ06869.1| hypothetical protein SELMODRAFT_186507 [Selaginella moellendorffii]
Length = 458
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/474 (60%), Positives = 370/474 (78%), Gaps = 21/474 (4%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA--EPVKISLKDCLAC 62
FS L++ DL+DFIAPSQ CVVSL + P +K A +PVK++L DCLAC
Sbjct: 3 FSTALKLADLNDFIAPSQACVVSLNSKKIEVSYVPSSFDQTKNVAVEKPVKVTLHDCLAC 62
Query: 63 SGCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTT 121
SGCITSAETVMLE QS++EFL+ + + GK+VI+SLSPQSRASLA ++G+S LQVF+KLT
Sbjct: 63 SGCITSAETVMLEHQSIEEFLNRLSDSGKSVIVSLSPQSRASLAAYYGLSQLQVFRKLTG 122
Query: 122 FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICY 181
FLKSLGVK++FDTSCSRDL+LIE+C EF+ RYK+ Q LP+++SACPGWICY
Sbjct: 123 FLKSLGVKAVFDTSCSRDLSLIESCVEFVNRYKERQ----------LPVVTSACPGWICY 172
Query: 182 AEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE 241
AEK L + ILPYIS VKSPQQ +GA +K H C LG RP+++YHVTVMPCYDKKLEA+R+
Sbjct: 173 AEKTLDAEILPYISRVKSPQQAMGAVLKRHACYALGLRPEDVYHVTVMPCYDKKLEASRD 232
Query: 242 DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301
DF+F L++ + EVDSVLT+GE+LDL+Q + ++F +LEE PLDK+LTNVD+
Sbjct: 233 DFIFALENGASG-------LAEVDSVLTSGEILDLLQSRDIDFMSLEEQPLDKLLTNVDE 285
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKF 361
+GHLYGV G SGGYAE VF++AAK LFG + +EF+ +RN+DFREV LEV+G+ LKF
Sbjct: 286 QGHLYGVPGGSGGYAECVFKYAAKHLFGAEPD-RVEFQVVRNADFREVKLEVDGEVRLKF 344
Query: 362 ALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI 421
AL YGF+N+QN+VRK++++KC+YQ+VE+MACPSGCLNGGGQIKPK GQS KELI+ LE+
Sbjct: 345 ALAYGFRNIQNLVRKIRLKKCEYQYVEIMACPSGCLNGGGQIKPKEGQSAKELIQNLESA 404
Query: 422 YLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
YL+ V + DPF NP+V+SLYD WL +P S +K+ + TEYH K++T+QL NW
Sbjct: 405 YLQEVEMKDPFDNPIVKSLYDSWLGEPASLSSKRVLSTEYHHREKNVTSQLANW 458
>gi|302762170|ref|XP_002964507.1| hypothetical protein SELMODRAFT_81861 [Selaginella moellendorffii]
gi|300168236|gb|EFJ34840.1| hypothetical protein SELMODRAFT_81861 [Selaginella moellendorffii]
Length = 458
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/474 (60%), Positives = 370/474 (78%), Gaps = 21/474 (4%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA--EPVKISLKDCLAC 62
FS L++ DL+DFIAPSQ CVVSL + P +K A +PVK++L DCLAC
Sbjct: 3 FSTALKLADLNDFIAPSQACVVSLNSKKIEVSYVPSSFDQTKNVAVEKPVKVTLHDCLAC 62
Query: 63 SGCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTT 121
SGCITSAETVMLE QS++EFL+ + + GK+VI+SLSPQSRASLA ++G+S LQVF+KLT
Sbjct: 63 SGCITSAETVMLEHQSIEEFLNRLSDSGKSVIVSLSPQSRASLAAYYGLSQLQVFRKLTG 122
Query: 122 FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICY 181
FLKSLGVK++FDTSCSRDL+LIE+C EF+ RYK+ Q LP+++SACPGWICY
Sbjct: 123 FLKSLGVKAVFDTSCSRDLSLIESCVEFVNRYKERQ----------LPVVTSACPGWICY 172
Query: 182 AEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE 241
AEK L + ILPYIS VKSPQQ +GA +K H C LG RP+++YHVTVMPCYDKKLEA+R+
Sbjct: 173 AEKTLDAEILPYISRVKSPQQAMGAVLKRHACYALGLRPEDVYHVTVMPCYDKKLEASRD 232
Query: 242 DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301
DF+F +++ + EVDSVLT+GE+LDL+Q + ++F +LEE PLDK+LTNVD+
Sbjct: 233 DFIFAVENGASG-------LAEVDSVLTSGEILDLLQSRDIDFMSLEEQPLDKLLTNVDE 285
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKF 361
+GHLYGV G SGGYAE VF++AAK LFG + +EF+ +RN+DFREV LEV+G+ LKF
Sbjct: 286 QGHLYGVPGGSGGYAECVFKYAAKHLFGAEPD-RVEFQVVRNADFREVKLEVDGEVRLKF 344
Query: 362 ALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI 421
AL YGF+N+QN+VRK++++KC+YQ+VE+MACPSGCLNGGGQIKPK GQS KELI+ LE+
Sbjct: 345 ALAYGFRNIQNLVRKIRLKKCEYQYVEIMACPSGCLNGGGQIKPKEGQSAKELIQNLESA 404
Query: 422 YLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
YL+ V + DPF NP+V+SLYD WL +P S +K+ + TEYH K++T+QL NW
Sbjct: 405 YLQEVEMKDPFDNPIVKSLYDSWLGEPASLSSKRVLSTEYHHREKNVTSQLANW 458
>gi|125587922|gb|EAZ28586.1| hypothetical protein OsJ_12572 [Oryza sativa Japonica Group]
Length = 414
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 280/412 (67%), Positives = 346/412 (83%), Gaps = 9/412 (2%)
Query: 64 GCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL 123
GCITSAETVMLEKQSL +F++ IN KAVI+S+SPQSRASLA FG+S QVF+KLT
Sbjct: 12 GCITSAETVMLEKQSLGDFITRINSDKAVIVSVSPQSRASLAAFFGLSQSQVFRKLTALF 71
Query: 124 KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 183
KS+GVK+++DTS SRDL+LIEAC+EF+ RY Q+Q S + + +LPMLSSACPGWICYAE
Sbjct: 72 KSMGVKAVYDTSSSRDLSLIEACSEFVTRYHQNQLSSGKEAGKNLPMLSSACPGWICYAE 131
Query: 184 KQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDF 243
K LGS+ILPYIS+VKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R+DF
Sbjct: 132 KTLGSFILPYISAVKSPQQAIGAAIKHHMVGKLGLKPHDVYHVTVMPCYDKKLEAVRDDF 191
Query: 244 VFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEG 303
VF ++ ++ T EVDSVLTTGEVLDLIQ ++V+F+ LEESP+D++LTNVDD+G
Sbjct: 192 VFSVEDKDVT---------EVDSVLTTGEVLDLIQSRSVDFKTLEESPMDRLLTNVDDDG 242
Query: 304 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFAL 363
LYGV+G SGGYAETVFRHAA LF + IEG ++F+ +RNSDFREV LEVEGK +LKFAL
Sbjct: 243 QLYGVSGGSGGYAETVFRHAAHVLFDRKIEGSVDFRILRNSDFREVTLEVEGKPVLKFAL 302
Query: 364 CYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL 423
CYGF+NLQNI+RK+KM KC+Y F+EVMACPSGCLNGGGQIKP GQS K+LI+ LE +Y+
Sbjct: 303 CYGFRNLQNIIRKIKMGKCEYHFIEVMACPSGCLNGGGQIKPAKGQSAKDLIQLLEDVYI 362
Query: 424 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++V +++PF+NP+ + LYDEWL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 363 QDVSVSNPFENPIAKRLYDEWLGQPGSENAKKYLHTKYHPVVKSVASQLQNW 414
>gi|414872782|tpg|DAA51339.1| TPA: hypothetical protein ZEAMMB73_806611, partial [Zea mays]
Length = 423
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/429 (65%), Positives = 348/429 (81%), Gaps = 13/429 (3%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKN----PDKPQVSTSSKQQAEPVKISLK 57
S +FSP L+ DL+DFIAPSQ+C++SL K T + ++ + + SSK E VKISLK
Sbjct: 3 SSRFSPVLQASDLNDFIAPSQDCIISLNKNTSSSRRLQKNQKETTVSSKPPEEAVKISLK 62
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
DCLACSGCITSAETVMLEKQSL +F+ +IN KAVI+S+SPQSRASLA FG+S QV +
Sbjct: 63 DCLACSGCITSAETVMLEKQSLSDFIDHINSDKAVIVSVSPQSRASLAAFFGLSQSQVLR 122
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
KLT KS+GVK++FDTS SRDL+LIEACNEF++RY+++ + + ++LPM+SSACPG
Sbjct: 123 KLTALFKSIGVKAVFDTSSSRDLSLIEACNEFVSRYQKNHSCSGQEAGANLPMISSACPG 182
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
WICYAEK LGSYILPYISSVKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLE
Sbjct: 183 WICYAEKTLGSYILPYISSVKSPQQAIGAAIKHHVVDKLGLKPYDVYHVTVMPCYDKKLE 242
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
A R+DF F +D G E+ EVDSVLTTGEVLDLIQ K+++F+ +EES LD++LT
Sbjct: 243 AVRDDFTFSVD---------GKEVKEVDSVLTTGEVLDLIQSKSIDFKTVEESSLDRLLT 293
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
NVD+EGHLYGV+G SGGYAETVFR+ A ++ + IEG L+F+ +RNSDFRE+ LEVEGK
Sbjct: 294 NVDEEGHLYGVSGGSGGYAETVFRYGANVIYKREIEGPLDFRILRNSDFREITLEVEGKP 353
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
+LKFALCYGF+NLQNIVRK+KM KC+Y F+EVMACPSGCLNGGGQ+KP GQS KELI+
Sbjct: 354 VLKFALCYGFRNLQNIVRKIKMGKCEYHFIEVMACPSGCLNGGGQLKPVQGQSAKELIQQ 413
Query: 418 LETIYLENV 426
LE++Y ++V
Sbjct: 414 LESVYTQDV 422
>gi|215695478|dbj|BAG90639.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 394
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/403 (67%), Positives = 337/403 (83%), Gaps = 9/403 (2%)
Query: 73 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 132
MLEKQSL +F++ IN KAVI+S+SPQSRASLA FG+S QVF+KLT KS+GVK+++
Sbjct: 1 MLEKQSLGDFITRINSDKAVIVSVSPQSRASLAAFFGLSQSQVFRKLTALFKSMGVKAVY 60
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 192
DTS SRDL+LIEAC+EF+ RY Q+Q S + + +LPMLSSACPGWICYAEK LGS+ILP
Sbjct: 61 DTSSSRDLSLIEACSEFVTRYHQNQLSSGKEAGKNLPMLSSACPGWICYAEKTLGSFILP 120
Query: 193 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 252
YIS+VKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R+DFVF ++ ++
Sbjct: 121 YISAVKSPQQAIGAAIKHHMVGKLGLKPHDVYHVTVMPCYDKKLEAVRDDFVFSVEDKDV 180
Query: 253 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 312
T EVDSVLTTGEVLDLIQ ++V+F+ LEESP+D++LTNVDD+G LYGV+G S
Sbjct: 181 T---------EVDSVLTTGEVLDLIQSRSVDFKTLEESPMDRLLTNVDDDGQLYGVSGGS 231
Query: 313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 372
GGYAETVFRHAA LF + IEG ++F+ +RNSDFREV LEVEGK +LKFALCYGF+NLQN
Sbjct: 232 GGYAETVFRHAAHVLFDRKIEGSVDFRILRNSDFREVTLEVEGKPVLKFALCYGFRNLQN 291
Query: 373 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 432
I+RK+KM KC+Y F+EVMACPSGCLNGGGQIKP GQS K+LI+ LE +Y+++V +++PF
Sbjct: 292 IIRKIKMGKCEYHFIEVMACPSGCLNGGGQIKPAKGQSAKDLIQLLEDVYIQDVSVSNPF 351
Query: 433 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
+NP+ + LYDEWL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 352 ENPIAKRLYDEWLGQPGSENAKKYLHTKYHPVVKSVASQLQNW 394
>gi|168052192|ref|XP_001778535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670133|gb|EDQ56708.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/476 (52%), Positives = 344/476 (72%), Gaps = 42/476 (8%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPD-KPQVSTSSKQQA----EPVKISLKDC 59
+ ++++G +D+I+ SQ CVV++K + P QV SK++ +PVK+SL DC
Sbjct: 1 MASSVKLGSHNDYISQSQGCVVTMKGFKKQAPAVDSQVRIVSKKETAVSTDPVKVSLHDC 60
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
LACSGCIT+AETVMLE+QS F+SN+ LQV KKL
Sbjct: 61 LACSGCITTAETVMLEQQSTG-FVSNLF-------------------------LQV-KKL 93
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
+ FLKSLGVK++FDTSCSRD++L+E+C EF+ R+++ ++ P+L+S+CPGW+
Sbjct: 94 SGFLKSLGVKAVFDTSCSRDISLVESCAEFVERFREKKK---------FPILASSCPGWV 144
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEK G +LPYIS+VKSPQQ +G +K ++C+ LG P+++YHVT+MPCYDKKLEAA
Sbjct: 145 CYAEKTHGDDVLPYISAVKSPQQVMGTILKRYVCKSLGLLPEDVYHVTIMPCYDKKLEAA 204
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
REDF+F+++ + T ++ +I EVD VLT+GE+LDL+Q + V F LEE PLD++LTNV
Sbjct: 205 REDFIFEVEGEGLTEGNKP-QITEVDCVLTSGEILDLLQTRNVVFGELEEVPLDRVLTNV 263
Query: 300 DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLL 359
D+ HLYGV+G SGGYAE +FR+A++ LFGK I G L+FKT+RN+DFRE+ LEV+GK +L
Sbjct: 264 DEREHLYGVSGGSGGYAECIFRYASRELFGKEISGPLQFKTLRNADFREITLEVDGKQVL 323
Query: 360 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 419
KFAL YGF+N+QNIVR++K +CDY F+EVMACPSGCLNGGGQIKPK GQ+ KELI+ LE
Sbjct: 324 KFALVYGFRNIQNIVRQIKAGRCDYHFMEVMACPSGCLNGGGQIKPKKGQTAKELIQQLE 383
Query: 420 TIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
YL +V + +PF+N +V+ LY EWL P SEKA + + T+YH K++ + +W
Sbjct: 384 GAYLNDVDVREPFENEIVKGLYKEWLGYPSSEKASQIMRTQYHVREKTVANFVSDW 439
>gi|384245871|gb|EIE19363.1| iron hydrogenase [Coccomyxa subellipsoidea C-169]
Length = 491
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/504 (45%), Positives = 320/504 (63%), Gaps = 47/504 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLK-------KATFKNPDKPQVSTSSKQQAEPVKISL 56
+FS +++ DL+DFIAPSQ CVV++ K F DKP S +SL
Sbjct: 3 QFSGAVKLADLNDFIAPSQACVVNIHGKKEGNIKLDFDALDKPPEKASKLINI----MSL 58
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+DCLACSGC+TSAETV+LE QS EF+S + + G V++S+SPQSR +LA +G+SP +
Sbjct: 59 QDCLACSGCVTSAETVLLEHQSAAEFMSKLADPGVTVVVSVSPQSRTALAAFYGLSPAET 118
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+KLT F K LGV+++ DTS RD L+EA EF+ RY+++ S SLPML+SAC
Sbjct: 119 LQKLTGFFKGLGVRAVLDTSTGRDFALLEAAAEFVQRYREAHPELAGESMPSLPMLASAC 178
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQT-------------------IGATIKHHICQKL 216
PGW+CYAEK G Y+LP+ISS KSPQ + +G +K H+ +
Sbjct: 179 PGWVCYAEKTHGDYVLPHISSTKSPQASPQLYKFPANTPSITSLFAVMGTLVKRHLAAQW 238
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
G +P ++YH +MPCYDKKLEA+REDF G + EVDSVLT+GEV +
Sbjct: 239 GLQPGQVYHCAIMPCYDKKLEASREDF-----------NVPGTSVAEVDSVLTSGEVQLM 287
Query: 277 IQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GH 335
+++ L + LD ++ + ++G LYG+ G SGGY E +FR AA LFGK +E G
Sbjct: 288 LEVHGRPLGELPSARLDSLVGSAPEDGQLYGLPGGSGGYLEYIFRAAAAQLFGKEVEAGP 347
Query: 336 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
L +T+RN+DF+EV+L+V G+ L+FA+ YGF+N+Q +VRK+K +Y +VE+MACPSG
Sbjct: 348 LPLRTLRNADFQEVSLDVGGRPALRFAIAYGFRNIQTLVRKIKRGASEYDYVEIMACPSG 407
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLEN---VMLADPFKNPLVRSLYDEWLEQP-GSE 451
CLNGGGQIKP+PGQS ++L+ L+ IY + V+ P NP V +LY+ W+ P GSE
Sbjct: 408 CLNGGGQIKPQPGQSSQQLLDELDAIYHDPQACVVPRLPQDNPTVAALYERWVGAPVGSE 467
Query: 452 KAKKHVHTEYHPVVKSITAQLHNW 475
+ ++ TEYH KSI A + +W
Sbjct: 468 QGRQLFFTEYHKRDKSIAATVGDW 491
>gi|328868553|gb|EGG16931.1| nuclear prelamin A recognition factor-like protein [Dictyostelium
fasciculatum]
Length = 493
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/512 (48%), Positives = 320/512 (62%), Gaps = 56/512 (10%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNC---VVSLKKATFKN----PDKPQVSTSS---KQQAE 50
M+EKFS L++ +L DFI PSQ C V+ KK T D V T+S K Q E
Sbjct: 1 MAEKFSSVLKLTELDDFITPSQECIKPVIIDKKNTSTQFTIESDGSYVETTSDGEKVQME 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA-------VIISLSPQSRAS 103
I+L DCLACSGCITSAE+V++ QS EF SN+ K A V++S+SPQSRAS
Sbjct: 61 KATITLNDCLACSGCITSAESVLISAQSTVEF-SNVLKSIAESKPDSIVVVSISPQSRAS 119
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
LA HFGI +Q+ +KL TFLKS+GV +FDTS SR+ LIE+ EFIARYKQ+
Sbjct: 120 LANHFGIDSMQLHRKLVTFLKSIGVNHVFDTSFSREFALIESAEEFIARYKQTY------ 173
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGWICYAEK G Y+LPYIS+ KSPQQ +G +K+++ +K+ P I
Sbjct: 174 -DKPLPMLASACPGWICYAEKTHGDYVLPYISTTKSPQQIMGTLVKYYLSKKINTLPSNI 232
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA-V 282
YHVT+MPCYDKKLEA+R DF Y D + +VD VL+T EVL+L++ V
Sbjct: 233 YHVTIMPCYDKKLEASRSDF----------YNDV-FKTKDVDCVLSTSEVLELLKEHGDV 281
Query: 283 NFEALEESPLDKMLTN-------VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH 335
+ LEE+ LD + N GV GS+GGY E +FR AAK LFGK IEG
Sbjct: 282 DLLKLEEATLDNSIFNNVIFNQQTGQPEKFLGVTGSTGGYFEYLFRRAAKELFGKEIEGE 341
Query: 336 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM-------RKCDYQFVE 388
+E+K RN+DF+E +LEV+GK +L FA YGF+N+QNIVRK+K ++ Y FVE
Sbjct: 342 IEYKVGRNTDFKEASLEVDGKKVLSFAKAYGFRNIQNIVRKIKTTTASSSKKEPQYHFVE 401
Query: 389 VMACPSGCLNGGGQIKPKPG--QSPKELIKTLETIYLENVMLADPFKNPL---VRSLYDE 443
VMACPSGC+NGGGQIK G + K LI+ E Y +++ + + P ++ +YD+
Sbjct: 402 VMACPSGCINGGGQIKAASGSLREQKLLIEQSEQKYYQDLSIQSYEQLPSTLEIKDIYDQ 461
Query: 444 WLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
W+ P S AK +HT+YH + KS A W
Sbjct: 462 WMNGPFSLDAKTKLHTQYHMIEKSKNALSIKW 493
>gi|217035123|ref|NP_001074460.2| cytosolic Fe-S cluster assembly factor narfl [Danio rerio]
Length = 477
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 235/496 (47%), Positives = 317/496 (63%), Gaps = 40/496 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ CV V ++K ++ K Q+ +Q+
Sbjct: 1 MASHFSGVLQLTDLDDFITPSQECVKPVKVEKKQGRSVAKIQIEDDGSYFQVHQDGQRQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQS 100
E KI+L DCLACSGCITSAE+V++ +QS +E + K V ++S+SPQS
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEELYRVLRHNKQVSSTEQKVVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA H+GI +V +KLT+FLK LGV +FDT+ SR +LIE+ EF+ R+ Q
Sbjct: 121 RASLAAHYGIGSSEVARKLTSFLKHLGVHHVFDTAFSRSFSLIESQREFLQRFSQR---- 176
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
E +LPML+SACPGWICYAEK G +ILPYIS+ +SPQQ +G+ +K + + G P
Sbjct: 177 -EADKKALPMLASACPGWICYAEKTHGEFILPYISTTRSPQQIMGSLVKGYFASQKGVSP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
IYHVTVMPCYDKKLEA+R DF S+ ET EVD V+T+GEVL +++ +
Sbjct: 236 QMIYHVTVMPCYDKKLEASRPDFYL---SEHETR--------EVDCVITSGEVLKMLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFK 339
V+ ++ +PLD M +NV E L G AGS SGGY +++HAAK LFG ++ L +K
Sbjct: 285 KVSLRDVQPAPLDTMFSNVCGE-ELLGHAGSGSGGYLHHIYKHAAKQLFGVDVD-ELTYK 342
Query: 340 TIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNG 399
T++N DF+EV LE +G+ LLKFA YGF+N+QN+V+K+K K Y FVEVMACPSGCLNG
Sbjct: 343 TMKNKDFQEVTLEKDGQVLLKFAAVYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGCLNG 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
GGQ+KP QS KEL++ +E +Y + + P + V LY WLE G EKA++ +HT
Sbjct: 403 GGQLKPSADQSNKELLQQVEEVY-RSEHPSVPEDDSQVAELYQSWLESVGEEKARQLLHT 461
Query: 460 EYHPVVKSITAQLHNW 475
+YH V K+ W
Sbjct: 462 QYHAVEKTANGLSIKW 477
>gi|432868376|ref|XP_004071507.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
isoform 1 [Oryzias latipes]
Length = 475
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/493 (46%), Positives = 310/493 (62%), Gaps = 36/493 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ CV + ++K K+ + Q+ K++
Sbjct: 1 MASVFSGVLQLTDLDDFITPSQECVKPIKVEKKQGKSVARIQIEDDGSYVQVNQDGGKEK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKG----KAVIISLSPQSRA 102
E KISL DCLACSGCITSAE+V++ +QS +E L + NKG K V++S+SPQSRA
Sbjct: 61 LEKAKISLNDCLACSGCITSAESVLITQQSPEELLKVLRNNKGAAEQKTVVVSVSPQSRA 120
Query: 103 SLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 162
SLA HFGIS + ++LT+FLK+LGV +FDTS SR +L+E+ EF+ R+++ +
Sbjct: 121 SLAAHFGISSSEAGRRLTSFLKNLGVHYVFDTSFSRTFSLLESQREFVERFQRKGQD--- 177
Query: 163 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
N +LPML+SACPGWICYAEK G YILPYIS+ +SPQQ +G+ +K H +K G P +
Sbjct: 178 --NKALPMLTSACPGWICYAEKTHGEYILPYISTTRSPQQMMGSLVKSHFAEKQGLSPQQ 235
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
IYHV VMPC+DKKLEA+R DF E EVD V+T+GEV +++ +
Sbjct: 236 IYHVAVMPCFDKKLEASRSDFFMN-----------KAETREVDCVITSGEVQKMLEEHHI 284
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
+ +E LD M ++V + L SGGY VF +AAK LFG+ ++ L +KT+R
Sbjct: 285 SLNDVEPGTLDSMFSSVCGDELLSHAGSGSGGYLHHVFTYAAKQLFGEEVK-ELTYKTLR 343
Query: 343 NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
N DF+EV LE +G+ LL FA YGF+N+QN+V+K+K K Y FVEVMACPSGCLNGGGQ
Sbjct: 344 NKDFQEVRLEKDGEVLLCFAATYGFRNIQNLVQKLKRGKSLYHFVEVMACPSGCLNGGGQ 403
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
IK GQ+ KEL++ +E +Y E L P + V +Y WL G ++A++ + T+YH
Sbjct: 404 IKAAAGQNQKELLQKVEELYKEERPLL-PEDDTRVAEIYQTWLHGVGEDRARELLRTQYH 462
Query: 463 PVVKSITAQLHNW 475
V K W
Sbjct: 463 AVEKMTNGLTIKW 475
>gi|330792992|ref|XP_003284570.1| hypothetical protein DICPUDRAFT_27887 [Dictyostelium purpureum]
gi|325085484|gb|EGC38890.1| hypothetical protein DICPUDRAFT_27887 [Dictyostelium purpureum]
Length = 489
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/502 (46%), Positives = 310/502 (61%), Gaps = 48/502 (9%)
Query: 3 EKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTS----------SKQQA 49
++FS L++ + D+I PSQ C+ ++ K+ K ++ ++ +K+Q
Sbjct: 7 DRFSSVLKLTEF-DYIVPSQICIKPVETPEKSNDNGNSKIEIESNGRYVEISEDGTKKQL 65
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------KAVIISLSPQSRAS 103
E I+L DCLACSGCITSAE+V++ QS+ EFLSNIN K ++++LSPQSRAS
Sbjct: 66 EKATITLNDCLACSGCITSAESVLITAQSIQEFLSNINSNTTDSDKKTIVVTLSPQSRAS 125
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
LA ++ IS LQV KKL TF KSL + +FD+S SRD +L+E+ EF+ARYK+ D
Sbjct: 126 LAAYYKISTLQVIKKLKTFFKSLNIDYLFDSSFSRDFSLLESAAEFVARYKKQLGED--- 182
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPMLSSACPGWICYAEK G YILPYIS+ KSPQQ +G +K++ +K+ P I
Sbjct: 183 --QPLPMLSSACPGWICYAEKTHGDYILPYISTTKSPQQIMGTLVKYYFSKKINIEPSNI 240
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
YHVT+MPCYDKKLEA+R DF Y D + +VD VL+T E+LDL + K +
Sbjct: 241 YHVTIMPCYDKKLEASRNDF----------YND-IFKTKDVDCVLSTSEILDLFKEKNTD 289
Query: 284 FEALEES--PLDKMLTNVDDEGH-LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
F LEES + N++ E YGV GSSGGY E VFR+AAK LF V +E+K
Sbjct: 290 FIQLEESTEAITSEYFNINQEQQEFYGVKGSSGGYLEFVFRYAAKELFN-VDVNEIEYKV 348
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-------DYQFVEVMACP 393
RN DF+EV+LEV G+ +L FAL YGF+N+QNIVRK+K Y FVE+MACP
Sbjct: 349 GRNQDFKEVSLEVNGEKVLNFALAYGFRNIQNIVRKIKTNTTIKKESALPYHFVEIMACP 408
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
SGC+NGGGQIK + + K + E Y + + + +P NP V+ +Y WL S A
Sbjct: 409 SGCINGGGQIKQEGIKENKAFLLETEENYNQQI-IRNPQDNPQVQEIYKNWLNGCFSHDA 467
Query: 454 KKHVHTEYHPVVKSITAQLHNW 475
+HT+YH + K+ A W
Sbjct: 468 ITKLHTQYHRIEKTTNALNIKW 489
>gi|348537868|ref|XP_003456415.1| PREDICTED: cytosolic Fe-S cluster assembly factor narfl-like
isoform 1 [Oreochromis niloticus]
Length = 477
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/496 (45%), Positives = 311/496 (62%), Gaps = 40/496 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST----------SSKQQ 48
M+ FS L++ DL DFI PSQ CV V ++K K+ K Q+ KQ+
Sbjct: 1 MASHFSGVLQLTDLDDFITPSQECVKPVKVEKKQGKSVAKIQIEDDGSYVQVNKDGGKQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E KI+L DCLACSGCITSAE+V++ +QS +E ++N + K V++S+SPQ+
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEELFKVLRRNKVANETEQKTVVVSVSPQA 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA H+ +S + ++LT+F K LGV +FDTS SR +L+E+ EF+ R+++ Q+
Sbjct: 121 RASLAAHYNLSSSEAGRRLTSFFKGLGVHHVFDTSFSRTFSLLESQREFVERFQRKQQD- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+ +LPML+SACPGWICYAEK G YILPYIS+ +SPQQ +G+ +K + + G P
Sbjct: 180 ----SKALPMLTSACPGWICYAEKTHGEYILPYISTTRSPQQMMGSLVKSYFAGQQGLSP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
+IYHV VMPC+DKKLEA+R DF E EVD V+T+GEVL +++ +
Sbjct: 236 QQIYHVAVMPCFDKKLEASRSDFYLT-----------NAETREVDCVITSGEVLKMLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE + D M ++ + L SGGY VF +AAK LFG+ ++ +L +KT
Sbjct: 285 NVSLNDLESAAPDTMFSSFCGDEFLSHAGSGSGGYLHHVFTYAAKHLFGEEVK-NLTYKT 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV+LE +G LL FA YGF+N+QN+V+K+K K Y FVEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVSLEKDGVVLLCFASAYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIY-LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
GQ+KP GQ+ KEL++ +E +Y E +L P + V LY WL G E+AK+ +HT
Sbjct: 404 GQVKPSTGQNQKELLQKVEDLYKAERPLL--PEDDARVAELYQSWLNSVGDERAKELLHT 461
Query: 460 EYHPVVKSITAQLHNW 475
+YH V K W
Sbjct: 462 QYHTVEKMTNGLTMKW 477
>gi|348585433|ref|XP_003478476.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Cavia
porcellus]
Length = 476
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/499 (45%), Positives = 310/499 (62%), Gaps = 47/499 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFI PSQ+C+ +K K P QV
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPVK--VDKRPGSAVTKIHIEDDGSYFQVDQDGGT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSP 98
++ E ++SL DCLACSGC+TSAETV++ +QS +E + KAV ++S+SP
Sbjct: 59 RRLEKARVSLNDCLACSGCVTSAETVLITQQSHEELRKVLAANKAVPPDQQRLVVLSISP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F +SP KKLT+F K +G +FDT+ SR+ TL+E+ EFI R+++ +
Sbjct: 119 QSRASLAARFQLSPTDTAKKLTSFFKKIGAHFVFDTTFSRNFTLLESQREFIQRFREQTD 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S +LP+L+S+CPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 S-----RKALPVLASSCPGWICYAEKTHGSFILPYISTARSPQQVMGSLVKDFFAQQQNL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYH+TVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHITVMPCYDKKLEASRSDFF----NQEYQTRD-------VDCVLTTGEVFRLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + + + E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLPELEPAPLDSLTSTMSVEELTNHRGGGSGGYLEHVFRHAAQELFGIHV-AEVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLN
Sbjct: 342 TPVRNKDFQEVTLEKEGQVLLRFAMAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLN 401
Query: 399 GGGQIKPK--PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 456
GGGQ+K PG KEL++ +E +Y + + P P VR LY WL+ GSE+A
Sbjct: 402 GGGQLKATDVPG---KELLQQVERLY-SMIRVEAPEDAPGVRELYQHWLQGEGSEQASHL 457
Query: 457 VHTEYHPVVKSITAQLHNW 475
+HT+YH V K+ + W
Sbjct: 458 LHTQYHAVEKASSGLNIRW 476
>gi|432868378|ref|XP_004071508.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
isoform 2 [Oryzias latipes]
Length = 482
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/500 (44%), Positives = 307/500 (61%), Gaps = 43/500 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ CV + ++K K+ + Q+ K++
Sbjct: 1 MASVFSGVLQLTDLDDFITPSQECVKPIKVEKKQGKSVARIQIEDDGSYVQVNQDGGKEK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA-------------VIIS 95
E KISL DCLACSGCITSAE+V++ +QS +E L + K V++S
Sbjct: 61 LEKAKISLNDCLACSGCITSAESVLITQQSPEELLKVLRNNKVECFAQFGAAEQKTVVVS 120
Query: 96 LSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQ 155
+SPQSRASLA HFGIS + ++LT+FLK+LGV +FDTS SR +L+E+ EF+ R+++
Sbjct: 121 VSPQSRASLAAHFGISSSEAGRRLTSFLKNLGVHYVFDTSFSRTFSLLESQREFVERFQR 180
Query: 156 SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
+ N +LPML+SACPGWICYAEK G YILPYIS+ +SPQQ +G+ +K H +K
Sbjct: 181 KGQD-----NKALPMLTSACPGWICYAEKTHGEYILPYISTTRSPQQMMGSLVKSHFAEK 235
Query: 216 LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLD 275
G P +IYHV VMPC+DKKLEA+R DF E EVD V+T+GEV
Sbjct: 236 QGLSPQQIYHVAVMPCFDKKLEASRSDFFMN-----------KAETREVDCVITSGEVQK 284
Query: 276 LIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH 335
+++ ++ +E LD M ++V + L SGGY VF +AAK LFG+ ++
Sbjct: 285 MLEEHHISLNDVEPGTLDSMFSSVCGDELLSHAGSGSGGYLHHVFTYAAKQLFGEEVK-E 343
Query: 336 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
L +KT+RN DF+EV LE +G+ LL FA YGF+N+QN+V+K+K K Y FVEVMACPSG
Sbjct: 344 LTYKTLRNKDFQEVRLEKDGEVLLCFAATYGFRNIQNLVQKLKRGKSLYHFVEVMACPSG 403
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKK 455
CLNGGGQIK GQ+ KEL++ +E +Y E L P + V +Y WL G ++A++
Sbjct: 404 CLNGGGQIKAAAGQNQKELLQKVEELYKEERPLL-PEDDTRVAEIYQTWLHGVGEDRARE 462
Query: 456 HVHTEYHPVVKSITAQLHNW 475
+ T+YH V K W
Sbjct: 463 LLRTQYHAVEKMTNGLTIKW 482
>gi|356555012|ref|XP_003545834.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor narfl-like [Glycine max]
Length = 387
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/347 (60%), Positives = 260/347 (74%), Gaps = 7/347 (2%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
++ GKAVI+SLSP RAS+A HFGISP++ FKKLT F KSLGVK+IF SCS+DLTL+E
Sbjct: 41 SLGSGKAVIVSLSPXLRASIAVHFGISPIRAFKKLTRFFKSLGVKAIFYRSCSKDLTLVE 100
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+C EFI RY Q DDE++ SLPM++ A W+ YA+KQ+GS++LPYISSVK QQTI
Sbjct: 101 SCVEFITRYMQKHLVDDEKTKLSLPMIALAYLDWVSYAKKQVGSFVLPYISSVKILQQTI 160
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
GA IK+++CQ+LG RP E+Y V VMPCYDKKLEA+R DF Q E + E I EV
Sbjct: 161 GAIIKNYVCQELGLRPKEVYRVIVMPCYDKKLEASRNDFASLFGYQVEGHESEINMISEV 220
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VL TGEVL+LIQ K V+F++L E+PLDKML N+++EG++YGV S GGYAET+FR AA
Sbjct: 221 DLVLRTGEVLELIQSKEVDFKSL-ETPLDKMLININEEGYIYGVHRSFGGYAETIFRCAA 279
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K FG+ I+ L FK IRNSDF L +E +LLKFALCYG QNL NIV+K+K KCDY
Sbjct: 280 KKHFGRQIDDCLTFKNIRNSDF----LTLEASSLLKFALCYGLQNLVNIVQKLKTGKCDY 335
Query: 385 QFVEVMACPSG--CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 429
+E+MACPSG CLNGGGQ KP G SP EL + LE+ Y+ENV++
Sbjct: 336 HLLEIMACPSGTVCLNGGGQTKPNSGLSPNELSQLLESKYMENVVVG 382
>gi|47218040|emb|CAG11445.1| unnamed protein product [Tetraodon nigroviridis]
Length = 479
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/498 (45%), Positives = 314/498 (63%), Gaps = 42/498 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ CV V ++K K+ K Q+ KQ+
Sbjct: 1 MASHFSGVLQLTDLDDFITPSQECVKPVKVEKKQGKSVAKIQIEEDGSYIQINQDGGKQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA-------VIISLSPQSR 101
E KI+L DCLACSGCITSAE+V++ +QS +E + KA V++S+SPQSR
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEELFRVLQHNKASETEKKVVVVSVSPQSR 120
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
AS+A +G+S + ++LT+F K LGV +FDT+ +R +L+E+ EF+ R+++
Sbjct: 121 ASIAARYGLSSTEAGRRLTSFFKGLGVHHVFDTTFTRTFSLLESQREFVERFQRK----- 175
Query: 162 ERSNSSLPMLSSACPG---WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
E+ N SLPM++SACPG WICYAEK G ILPYIS+ +SPQQ +G+ +K + ++ G
Sbjct: 176 EQDNKSLPMMTSACPGTPGWICYAEKTHGDLILPYISTTRSPQQMMGSLVKGYFAEQQGL 235
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
P +IYHV VMPCYDKKLEA+R DF + +E + EVD V+T+GEV +++
Sbjct: 236 SPQQIYHVAVMPCYDKKLEASRSDF----------HMNEA-QTREVDCVITSGEVQLMLE 284
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
K V+ +E +PLD + +NV+ + L SSGGY VF +AAK LFG+ ++ L +
Sbjct: 285 EKNVSLSDVEPAPLDTVFSNVNGDEFLSHAGSSSGGYLHHVFTYAAKHLFGEEVK-ELTY 343
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
KT++N DF+EV LE +G LL FA YGF+N+QN+V+K K KC Y FVEVMACPSGCLN
Sbjct: 344 KTLKNKDFQEVTLEKDGVVLLCFASTYGFRNIQNLVQKFKRGKCPYHFVEVMACPSGCLN 403
Query: 399 GGGQIKPKPGQSPKELIKTLETIY-LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GGGQ+K PGQ+PKEL++ +E IY E M+ P N V LY WL G E+AK+ +
Sbjct: 404 GGGQLKALPGQNPKELLQKVEEIYRAERSMV--PEDNTRVAELYHSWLHSVGEERAKELL 461
Query: 458 HTEYHPVVKSITAQLHNW 475
HT YH V K W
Sbjct: 462 HTRYHTVEKMKNGLTMKW 479
>gi|224070248|ref|XP_002188515.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Taeniopygia guttata]
Length = 475
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 235/497 (47%), Positives = 323/497 (64%), Gaps = 44/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ +FS L++ +L DFIAP+Q C+ +K KNP K QV+ +
Sbjct: 1 MAARFSAALQLTELDDFIAPAQECIKPVK--VQKNPTKAAARIRIEADGSYFQVNQDGEA 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--LSNINKGKA------VIISLSP 98
++ E KI+L DCLACSGCITSAETV++ +QS +E + +NK A V++S+SP
Sbjct: 59 EKLEKAKITLNDCLACSGCITSAETVLVRQQSHEELCKVLALNKAAAAHEQKLVVVSVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA + L+ +KLTTFLK LGV +FDT+ SR+ +L+E+ EF+ R+ + E
Sbjct: 119 QSRASLAARCKLGLLETAQKLTTFLKGLGVHHVFDTTFSRNFSLLESQQEFVRRFHKQAE 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+LPML+SACPGWICYAEK GS+I+P+IS+ KSPQQ +G+ +K + ++
Sbjct: 179 D-----KKALPMLASACPGWICYAEKTHGSFIIPHISTTKSPQQVMGSLVKGYFAEQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD IYHVTVMPCYDKKLEA+R DF SQE RD VD V+TTGEVL L++
Sbjct: 234 PPDRIYHVTVMPCYDKKLEASRPDFF----SQEYQTRD-------VDCVITTGEVLKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ L+ +PLD ML +E G SGGY E +FRHAA+ LFG V + +
Sbjct: 283 QEGVSLSDLDPAPLDTMLGRAAEE-LSSHRGGGSGGYLEHIFRHAARELFG-VHVASIHY 340
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RN DF+EV LE +G+ LL+FAL YGF+N+QN+V+K+K KC Y +VEVMACPSGCLN
Sbjct: 341 KPLRNKDFQEVTLERDGEVLLQFALAYGFRNIQNLVQKLKRGKCPYHYVEVMACPSGCLN 400
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQIK + G+S KE ++ +E +Y E++ P +N VR LY+ WL GS++A + +H
Sbjct: 401 GGGQIKLE-GESSKEELQQVERLY-ESLRAEIPEENQAVRELYEHWLGGWGSDRALQVLH 458
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V ++ +A W
Sbjct: 459 TQYHAVERASSALSIKW 475
>gi|126335307|ref|XP_001365922.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Monodelphis domestica]
Length = 476
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/495 (46%), Positives = 316/495 (63%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ+C+ +K K K K Q+ +
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPMKVEKKLGKGTAKIQIEDDGTYFQVNQDGGSHK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--LSNINKG------KAVIISLSPQS 100
E KISL DCLACSGCITSAE+V++ +QS +E + N NK K V+IS+SPQS
Sbjct: 61 LEKAKISLNDCLACSGCITSAESVLITQQSHEELDKVLNFNKSAEPNQQKLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++ L KKLT F K+ GV +FDT+ SR+ +L+E+ EF+ R+++ ES
Sbjct: 121 RASLAAKFQLTLLDTAKKLTAFFKNRGVHYVFDTTFSRNFSLLESQREFVQRFRRRTES- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +G+ IK H Q+ P
Sbjct: 180 ----KQALPMLASACPGWICYAEKTHGSFIIPYISTAKSPQQVMGSLIKDHFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +Q+ RD VD V+TTGE+L L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRSDFF----NQQYQTRD-------VDCVITTGEILRLLEQE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ ++ +PLD ++V E L G SGGY E +FRHAA+ LFG ++ + +K
Sbjct: 285 GVSLSDVDPAPLDAEFSSVSGEELLGHHGGGSGGYLEHIFRHAAQELFGMQVD-EITYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
++N DF+EV LE +G LL FAL YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGG
Sbjct: 344 LKNKDFQEVTLEKDGTVLLHFALAYGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQIK + S K+L++ +E +Y E V + P + ++ LY++WL+ SE+A K +HT+
Sbjct: 404 GQIKAE-AISSKDLLQQVEKLY-EMVKIVVPDSSTEIKELYEQWLKGEDSEEAGKTLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K T W
Sbjct: 462 YHAVEKMSTGFNIKW 476
>gi|395515647|ref|XP_003762012.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Sarcophilus harrisii]
Length = 476
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/495 (46%), Positives = 316/495 (63%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ+C+ +K K K K Q+ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPMKVEKKLGKGTAKIQIEDDGTYFQVNQDGGSRK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--LSNINK------GKAVIISLSPQS 100
E KISL DCLACSGCITSAE+V++ +QS +E + N NK K V+IS+SPQS
Sbjct: 61 LEKAKISLNDCLACSGCITSAESVLITQQSHEELYKILNFNKIAEPSQQKLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++PL KKLT F K+ GV +FDT+ SR+ +L+E+ EF+ R+++ ES
Sbjct: 121 RASLAARFQLTPLDTAKKLTAFFKNRGVHYVFDTAFSRNFSLLESQREFVQRFRRRTES- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +G+ IK H +K P
Sbjct: 180 ----KQALPMLASACPGWICYAEKTHGSFIIPYISTAKSPQQVMGSLIKDHFAKKQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD V+TTGE+L L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVITTGEILRLLEQE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
++ ++ +PLD + V E G SGGY E +FR+AA+ LFG ++G + +K
Sbjct: 285 GISLSDVDPAPLDAEFSFVSGEELFGHRGGGSGGYLEHIFRYAAQELFGIHVDG-ITYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
++N DF+EV LE +G LL FAL YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGG
Sbjct: 344 LKNKDFQEVMLEKDGTVLLHFALAYGFRNIQNLVQKLKKGKSPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQIK + S K+L++ +E +Y E V P +P ++ LY++WL+ SE+A +HT+
Sbjct: 404 GQIKAE-AVSSKDLLQQVEKLY-EMVRTVMPETSPEIKELYEQWLKGKDSEEAGTTLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K T W
Sbjct: 462 YHAVEKMNTGFNIKW 476
>gi|260801253|ref|XP_002595510.1| hypothetical protein BRAFLDRAFT_118961 [Branchiostoma floridae]
gi|229280757|gb|EEN51522.1| hypothetical protein BRAFLDRAFT_118961 [Branchiostoma floridae]
Length = 479
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/498 (45%), Positives = 314/498 (63%), Gaps = 42/498 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---------KATFKNPDK-PQVSTSSKQ-QA 49
M+ KFS L++ DL DFI PSQ C+ +K K N QV+ + ++ +
Sbjct: 1 MASKFSGVLQLTDLDDFITPSQECIKPVKVEKTAGEVGKIKIHNDGSYVQVAQTGEEVKL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFL------------SNINKGKAVIISLS 97
+ KI+L DCLACSGCITSAE V++ +QS DE I++ K V+IS+S
Sbjct: 61 QKAKITLNDCLACSGCITSAEAVLITQQSQDELYRVLQQNKEAAQDGEISQEKLVVISIS 120
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
PQSR SLA + +S L+ +KLT F K LG +FDT+ +RD +L E+ EF+ R++ +
Sbjct: 121 PQSRTSLAARYSLSSLETARKLTGFFKQLGAHYVFDTTFTRDFSLQESQREFVQRFQGND 180
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
S + LPML+SACPGWICYAEK G Y+LPYIS+ KSPQQ +G+ +K H ++ G
Sbjct: 181 AS------APLPMLASACPGWICYAEKTHGEYVLPYISTTKSPQQVMGSLVKDHFSKQQG 234
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
PD+IYHVTVMPC+DKKLEA+REDF + YR +VD V+T+GEV ++
Sbjct: 235 KPPDQIYHVTVMPCFDKKLEASREDFY------NDVYRTR-----DVDCVITSGEVEAML 283
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ + ++ + + LD M +++ L G SGGY E +FR+AA+ LF + ++ +
Sbjct: 284 EKEGISLVDVTPADLDTMFSSMSGAELLSHSGGGSGGYLEHIFRYAARELFEQDVQS-VN 342
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
+KT+RN DF+EV LEVEGK +LKFAL YGF+N+QN+V+K+K K Y FVEVMACPSGCL
Sbjct: 343 YKTLRNKDFKEVTLEVEGKVVLKFALAYGFRNIQNMVQKIKRGKSPYHFVEVMACPSGCL 402
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
NGGGQ++ ++ K+L+ E +YL + + P KNP + SLY EWL +EKA++ +
Sbjct: 403 NGGGQVRIGDKEADKDLLTKAEELYLA-LPVRTPEKNPRLESLYSEWLSGRDNEKARRML 461
Query: 458 HTEYHPVVKSITAQLHNW 475
HT YHPV K A W
Sbjct: 462 HTTYHPVEKMTNALAIKW 479
>gi|118097948|ref|XP_414836.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Gallus
gallus]
Length = 476
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/487 (46%), Positives = 325/487 (66%), Gaps = 39/487 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSK----------QQ 48
M+ FS L++ DL D+I PSQ C+ V ++K K K ++ Q+
Sbjct: 1 MASPFSGVLQLTDLDDYIGPSQECIKPVKVEKKPGKAAAKIKIEADGSYFQITQDGEAQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--------NKGKAVIISLSPQS 100
E KI+L DCLACSGCITSAE+V++ +QS +EF + ++ K V++S+SPQS
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEEFYKTLAFNKTAAPSEQKLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA +S L+ KKLT FLKS GV +FDT+ SR+ +L+E+ EF+ R+++ +S+
Sbjct: 121 RASLAAKCKMSVLETAKKLTAFLKSQGVHYVFDTTFSRNFSLLESQKEFVKRFRK--QSE 178
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
D+++ LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +G+ IK H ++ P
Sbjct: 179 DKKA---LPMLASACPGWICYAEKTHGSFIIPYISTTKSPQQIMGSLIKGHFAEQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
++IYHVTVMPCYDKKLEA+R DF +QE RD VD V+TTGEVL L++ +
Sbjct: 236 NKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVITTGEVLKLLEQE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ ++ +PLD M ++ +E G SGGY E ++++AAK LFG ++ +++K
Sbjct: 285 RVSLSDVDPAPLDTMFSSATEEELTGHSGGGSGGYLEHIYKYAAKELFGIEVDT-IQYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
++N DF+EV LE +G LL+FAL YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGG
Sbjct: 344 LKNKDFQEVTLEKDGVVLLQFALAYGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQIK + +S K+ ++ +E +Y E++ P +N V +LY++WL P SEKA+K +HTE
Sbjct: 404 GQIKVE-SESSKDWLQQVEKLY-ESLKTETPEENWTVTALYEQWLGGPESEKARKALHTE 461
Query: 461 YHPVVKS 467
YH V K+
Sbjct: 462 YHAVEKA 468
>gi|354478815|ref|XP_003501610.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Cricetulus griseus]
gi|344248282|gb|EGW04386.1| Cytosolic Fe-S cluster assembly factor NARFL [Cricetulus griseus]
Length = 476
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/497 (44%), Positives = 309/497 (62%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ FS L++ DL DFI PSQNC+ +K K P QV+ +
Sbjct: 1 MASPFSGVLQLTDLDDFIGPSQNCIKPVK--VDKKPGSGIAKIHIEDDGSYLQVNPDGRT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELKRVLDANKVAAPSQQRLVVVSVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F + +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R++
Sbjct: 119 QSRASLAARFQLDSSNTARKLTSFFKKIGVHFVFDTTFARNFSLLESQKEFVQRFRGQSN 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S + +LPML+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 SKE-----ALPMLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +Q+ RD VD VLTTGEV +++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQKYQTRD-------VDCVLTTGEVFRMLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE PLD + +V E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLLELEPVPLDGLTCSVSAEEPTSHRGGGSGGYLEHVFRHAAQELFG-IHVADVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLN
Sbjct: 342 QPMRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P +EL++ +E +Y V P P V+ LY WL+ GSE+A + +H
Sbjct: 402 GGGQLK-APDMQGRELLQQVEKLY-SMVRNEAPEDAPGVQELYQHWLQGEGSEQASRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V K+ + W
Sbjct: 460 TQYHAVEKTNSGISIRW 476
>gi|26335839|dbj|BAC31620.1| unnamed protein product [Mus musculus]
Length = 476
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/497 (45%), Positives = 311/497 (62%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ FS L++ DL DFI PSQNC+ +K A K P QV+ +
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQNCIKPVKVA--KKPGSGIAKIHIEDDGSYFQVNQDGRT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R+++
Sbjct: 119 QSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFREQAN 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 SRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQLL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVFRLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFGIHV-AEVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLN
Sbjct: 342 QPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P EL++ LE +Y V P P V+ LY WL+ SE+A + +H
Sbjct: 402 GGGQLK-APDTEGSELLQQLERLY-SMVRTGAPEDAPGVQELYQHWLQGEDSERASRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V K + W
Sbjct: 460 TQYHAVEKPSSGLSIRW 476
>gi|61557212|ref|NP_001013201.1| cytosolic Fe-S cluster assembly factor NARFL [Rattus norvegicus]
gi|81882576|sp|Q5BK18.1|NARFL_RAT RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|60688432|gb|AAH91240.1| Nuclear prelamin A recognition factor-like [Rattus norvegicus]
gi|149052134|gb|EDM03951.1| nuclear prelamin A recognition factor-like [Rattus norvegicus]
Length = 476
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/492 (45%), Positives = 307/492 (62%), Gaps = 51/492 (10%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKK---------------ATFK-NPDKPQVS 42
M+ FS L++ DL DFI PSQ+C+ V++ K + F+ NPD
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQSCIKPVTVAKKPGSGIAKIHIEDDGSYFQVNPD----- 55
Query: 43 TSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VII 94
Q+ E K+SL DCLACSGC+TSAET+++ +QS +E ++ K V++
Sbjct: 56 -GRSQKLEKAKVSLNDCLACSGCVTSAETILITQQSHEELRKVLDANKVAAPGQQRLVVV 114
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
S+SPQSRASLA F + +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R++
Sbjct: 115 SVSPQSRASLAARFQLDSTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFR 174
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+ S + +LPML+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ IK Q
Sbjct: 175 EQANSRE-----ALPMLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLIKDFFAQ 229
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV
Sbjct: 230 QQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVF 278
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
L++ + V+ LE PLD + +V E G SGGY E VFRHAA+ LFG +
Sbjct: 279 RLLEEEGVSLSELEPVPLDGLTRSVSAEEPTSHRGGGSGGYLEHVFRHAAQELFGIHV-A 337
Query: 335 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 394
+ ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPS
Sbjct: 338 DVTYQPMRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPS 397
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GCLNGGGQ+K P +EL++ +E +Y V P P V+ LY WL+ SE+A
Sbjct: 398 GCLNGGGQLK-APDTEGRELLQQVERLY-SMVRTEAPEDAPGVQELYQHWLQGEDSERAS 455
Query: 455 KHVHTEYHPVVK 466
+HT+YH V K
Sbjct: 456 HLLHTQYHAVEK 467
>gi|301769629|ref|XP_002920216.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Ailuropoda melanoleuca]
Length = 476
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/497 (44%), Positives = 306/497 (61%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFI PSQ+C+ ++ K P QVS
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPMR--VDKKPGSGVAKIHIEDDGSYFQVSQDGGT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E KISL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLDANKTAAPGQQRLVVVSVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P KKLT F K +GV +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 119 QSRASLATRFQLTPTDTAKKLTAFFKKIGVHYVFDTAFSRNFSLLESQREFVQRFR---- 174
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S +LP+L+SACPGWICYAEK GS+++PY+S+ +SPQQ +G+ +K Q+
Sbjct: 175 -GQANSTQALPVLTSACPGWICYAEKTHGSFLIPYLSTARSPQQVMGSLVKDFFAQQQRL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD IYHVTVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++
Sbjct: 234 TPDRIYHVTVMPCYDKKLEASRSDFF----SQEHQTRD-------VDCVVTTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + + + G SGGY E VF+HAA+ LFG ++ + +
Sbjct: 283 EEGVSLLELEPAPLDSLCNSASAQEPTSHRGGGSGGYLEHVFQHAARELFGIHVD-EVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K++ +C Y +VEVMACP+GCLN
Sbjct: 342 RPLRNKDFQEVTLEKEGRILLHFAAAYGFRNIQNLVQKLRRGRCPYHYVEVMACPAGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+ GSE+A + +H
Sbjct: 402 GGGQLK-APDAPSKELLQHVEMLY-GMVRTEAPEDAPGVQELYECWLQGEGSERAGRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ + W
Sbjct: 460 TGYHAVEKASSGLSIRW 476
>gi|254911120|ref|NP_080514.3| cytosolic Fe-S cluster assembly factor NARFL [Mus musculus]
gi|148887155|sp|Q7TMW6.2|NARFL_MOUSE RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|12858305|dbj|BAB31268.1| unnamed protein product [Mus musculus]
gi|148690499|gb|EDL22446.1| nuclear prelamin A recognition factor-like [Mus musculus]
Length = 476
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/497 (45%), Positives = 311/497 (62%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ FS L++ DL DFI PSQNC+ +K A K P QV+ +
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQNCIKPVKVA--KKPGSGIAKIHIEDDGSYFQVNQDGRT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R+++
Sbjct: 119 QSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFREQAN 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 SRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQLL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVFRLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFGIHV-AEVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLN
Sbjct: 342 QPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P EL++ LE +Y V P P V+ LY WL+ SE+A + +H
Sbjct: 402 GGGQLK-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQHWLQGEDSERASRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V K + W
Sbjct: 460 TQYHAVEKPSSGLSIRW 476
>gi|410902225|ref|XP_003964595.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Takifugu rubripes]
Length = 476
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/494 (44%), Positives = 311/494 (62%), Gaps = 37/494 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ CV V ++K K+ K Q+ KQ+
Sbjct: 1 MASHFSGVLQLTDLDDFITPSQECVKPVKVEKKQGKSVAKIQIEEDGSYIQINQDGGKQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA-------VIISLSPQSR 101
E KI+L DCLACSGCITSAE+V++ +QS +E L + K V++S+SPQSR
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEELLKVLQNNKVNATEKKVVVVSVSPQSR 120
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
ASLA + +S + ++LT+F K LGV +FDT+ SR +L+E+ EF+ R+++
Sbjct: 121 ASLAARYDLSSTEAGRRLTSFFKGLGVHHVFDTTFSRTFSLLESQREFVERFQRK----- 175
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
E+ +SLPM++SACPGWICYAEK G ++LPYIS+ +SPQQ +G+ +K + ++ G P+
Sbjct: 176 EQDKTSLPMMTSACPGWICYAEKTHGDFVLPYISTTRSPQQMMGSLVKGYFAEQRGLSPE 235
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
+IYHV VMPC+DKKLEA+R DF Y D+ + EVD V+T+GEV +++ +
Sbjct: 236 QIYHVAVMPCFDKKLEASRSDF----------YMDQP-QTREVDCVITSGEVQQMLEERD 284
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
V+ +E PLD + +NV + +L SGGY VF +AAK LFG+ ++ L +KT+
Sbjct: 285 VSLNNVEPVPLDTVFSNVYGDEYLSHAGSGSGGYLHHVFSYAAKHLFGEEVK-ELTYKTL 343
Query: 342 RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
+N DF+EV LE +G LL FA YGF+N+QN+V+K+K K Y FVEVMACPSGCLNGGG
Sbjct: 344 KNKDFQEVTLEKDGAVLLCFASTYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGCLNGGG 403
Query: 402 QIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q+K PGQ+ KEL++ +E IY L P +N V LY WL G E+AK+ + T+Y
Sbjct: 404 QLKALPGQNQKELLQKVEAIYRAERPLL-PEENNSVAELYQLWLRTVGEERAKELLRTQY 462
Query: 462 HPVVKSITAQLHNW 475
H V K W
Sbjct: 463 HTVEKMKNGLTMKW 476
>gi|351711193|gb|EHB14112.1| Cytosolic Fe-S cluster assembly factor NARFL [Heterocephalus
glaber]
Length = 476
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/495 (45%), Positives = 309/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ+C+ V + K K Q+ ++
Sbjct: 1 MASLFSGALQLTDLDDFIGPSQDCIKPVKVDKRPGSTVAKIQIEDDGSYFQVDQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQS 100
E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V ++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKTVPPDQQQLVVLSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F +SP +KLT+F K +G +FDT+ SR+ +LIE+ EF+ R++ +S
Sbjct: 121 RASLAARFQLSPTDTARKLTSFFKKIGAHFVFDTTFSRNFSLIESQREFVQRFRGQTDS- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +GA IK Q+ P
Sbjct: 180 ----RKALPVLASACPGWICYAEKTHGSFILPYISTARSPQQVMGALIKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYH+TVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHITVMPCYDKKLEASRSDFF----NQEYQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + +++ E G SGGY E VFRHAA+ LFG + + ++
Sbjct: 285 GVSLAELESAPLDSLTSSMSAEELTGHRGGGSGGYLEHVFRHAAQELFGIHV-AEVTYRP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEREGQVLLRFAMAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ+K P +EL++ +E +Y + P P + LY WL+ GSE+A+ +HT+
Sbjct: 404 GQLK-APDVPGRELLQQVERLY-SIIREEAPEDAPGIWELYQHWLQGEGSEQARHLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ + W
Sbjct: 462 YHAVEKASSGLSIRW 476
>gi|149750886|ref|XP_001496296.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Equus
caballus]
Length = 476
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/495 (44%), Positives = 305/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST----------SSKQQ 48
M+ FS L++ DL DFI PSQ+C+ V + K K + ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPVKVDKRLGSGVAKIHIEDDGSYFQVGHDGGTRK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E KISL DCLACSGC+TSAETV++ +QS +E ++ K V+IS+SPQS
Sbjct: 61 LEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLDANKTSAPGQQRLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLTTF K LG +FDT+ SR+ +L+E+ EF+ R++ +S
Sbjct: 121 RASLAARFQLNPTDTARKLTTFFKKLGAHYVFDTAFSRNFSLLESQREFVRRFRGQADS- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK G+ ++P++S+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----KQALPVLTSACPGWICYAEKTHGTLLIPHLSTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L+Q +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVFKLLQEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V LE +PLD + ++ + G SGGY E VFRHAA+ LFG V + ++
Sbjct: 285 GVLLSELEPTPLDSLCSSGSAQEPTSHQGGGSGGYLEHVFRHAAQELFG-VHVTEVTYRP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+K+K +C Y +VEVMACP+GCLNGG
Sbjct: 344 LRNKDFQEVTLEREGQVLLHFAMAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ+K P + KEL++ +E +Y V P P V+ LY WL+ GSE+A + +HT
Sbjct: 404 GQLK-APDTADKELLQHVERLY-SMVRTEVPEDVPGVQELYKRWLQGEGSEQAGRLLHTS 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ + W
Sbjct: 462 YHAVEKASSGLSIRW 476
>gi|11968051|ref|NP_071938.1| cytosolic Fe-S cluster assembly factor NARFL [Homo sapiens]
gi|74733617|sp|Q9H6Q4.1|NARFL_HUMAN RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein; AltName: Full=Protein related to
Narf
gi|10438222|dbj|BAB15199.1| unnamed protein product [Homo sapiens]
gi|20988037|gb|AAH30248.1| Nuclear prelamin A recognition factor-like [Homo sapiens]
gi|22654872|gb|AAM98737.1| protein related to Narf [Homo sapiens]
gi|119606128|gb|EAW85722.1| nuclear prelamin A recognition factor-like, isoform CRA_a [Homo
sapiens]
Length = 476
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/495 (44%), Positives = 307/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKASTGLGIRW 476
>gi|325301271|ref|NP_001191684.1| cytosolic Fe-S cluster assembly factor NARFL [Macaca mulatta]
Length = 476
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/495 (44%), Positives = 307/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRPGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPYISTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 DVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKANTGLGIRW 476
>gi|426380599|ref|XP_004056950.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Gorilla
gorilla gorilla]
Length = 476
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/495 (44%), Positives = 306/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ LK K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPLKVEKRVGSGVAKIRIEDDGSYFQINQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + +++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANQMAAPSQQRLIVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKASTGLGIRW 476
>gi|31217349|gb|AAH52830.1| Nuclear prelamin A recognition factor-like [Mus musculus]
Length = 476
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/497 (45%), Positives = 310/497 (62%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ FS L++ DL DFI PSQNC+ +K A K P QV+ +
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQNCIKPVKVA--KKPGSGIAKIHIEDDGSYFQVNQDGRT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R+++
Sbjct: 119 QSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFREQAN 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 SRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQLL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVFRLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ + LE +PLD + ++V E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGASLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFGIHV-AEVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLN
Sbjct: 342 QPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P EL++ LE +Y V P P V+ LY WL+ SE+A + +H
Sbjct: 402 GGGQLK-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQHWLQGEDSERASRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V K + W
Sbjct: 460 TQYHAVEKPSSGLSIRW 476
>gi|355709814|gb|EHH31278.1| Nuclear prelamin A recognition factor-like protein [Macaca mulatta]
Length = 476
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/495 (44%), Positives = 307/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRPGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPYISTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYH+TVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHITVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 DVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKANTGLGIRW 476
>gi|380815604|gb|AFE79676.1| cytosolic Fe-S cluster assembly factor NARFL [Macaca mulatta]
gi|383420789|gb|AFH33608.1| cytosolic Fe-S cluster assembly factor NARFL [Macaca mulatta]
Length = 476
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/495 (44%), Positives = 307/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRPGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPYISTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 DVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APERPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKANTGLGIRW 476
>gi|12851667|dbj|BAB29126.1| unnamed protein product [Mus musculus]
Length = 476
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/497 (45%), Positives = 310/497 (62%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ FS L++ DL DFI PSQNC+ +K A K P QV+ +
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQNCIKPVKVA--KKPGSGIAKIHIEDDGSYFQVNQDGRT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R+++
Sbjct: 119 QSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFREQAN 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 SRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQLL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVFRLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFGIHV-AEVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEVMACPSGCLN
Sbjct: 342 QPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+ P EL++ LE +Y V P P V+ LY WL+ SE+A + +H
Sbjct: 402 GGGQLT-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQHWLQGEDSERASRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V K + W
Sbjct: 460 TQYHAVEKPSSGLSIRW 476
>gi|402907164|ref|XP_003916348.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Papio
anubis]
Length = 476
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/495 (44%), Positives = 305/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRPGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ K V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAVPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKANTGLGIRW 476
>gi|62897571|dbj|BAD96725.1| nuclear prelamin A recognition factor-like variant [Homo sapiens]
Length = 476
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/495 (44%), Positives = 306/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ LP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFTLPHISTARSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKASTGLGIRW 476
>gi|326929056|ref|XP_003210687.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Meleagris gallopavo]
Length = 476
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/487 (46%), Positives = 320/487 (65%), Gaps = 39/487 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST----------SSKQQ 48
M+ FS L++ DL D+I PSQ C+ V ++K K K ++ Q+
Sbjct: 1 MASPFSGVLQLTDLDDYIGPSQECIKPVKVEKKPGKAAAKIKIEADGSYFQITQDGGAQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--------NKGKAVIISLSPQS 100
E KI+L DCLACSGCITSAE+V++ +QS +EF + N+ K V++S+SPQS
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEEFYKTLAFNKTAAPNEQKLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA +S L+ KKLT FLKS GV +FDT+ SR+ +L+E+ EF+ R+++ +S+
Sbjct: 121 RASLAAKCKMSVLETAKKLTAFLKSQGVHYVFDTTFSRNFSLLESQKEFVKRFRK--QSE 178
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
D+++ LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +G+ IK H ++ P
Sbjct: 179 DKKA---LPMLASACPGWICYAEKTHGSFIIPYISTTKSPQQIMGSLIKGHFAEQQHLPP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
++IYHVTVMPCYDKKLEA+R DF +QE RD VD V+TTGEVL L++ +
Sbjct: 236 NKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVITTGEVLKLLEQE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ + +PLD M + +E G SGGY E ++++AAK LFG ++ +++K
Sbjct: 285 KVSLSDVAPAPLDTMFNSATEEELTGHSGGGSGGYLEHIYKYAAKELFGIEVDT-IQYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
++N DF+EV LE +G LL FAL YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGG
Sbjct: 344 LKNKDFQEVTLEKDGAVLLHFALAYGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQIK + G+ K+ ++ +E +Y E++ P +N V +LY++WL SEKA K +HTE
Sbjct: 404 GQIKVE-GEPSKDWLQQVEKLY-ESLKTEIPEENRTVTALYEQWLGGTESEKAGKALHTE 461
Query: 461 YHPVVKS 467
YH V K+
Sbjct: 462 YHAVEKA 468
>gi|432098945|gb|ELK28435.1| Cytosolic Fe-S cluster assembly factor NARFL [Myotis davidii]
Length = 476
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/495 (45%), Positives = 304/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ+C+ +K K + K + ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPMKVDKKLGRGVAKIHIEDDGTYFQVSQDGGTRK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--LSNINKGKA------VIISLSPQS 100
E KISL DCLACSGC+TSAETV++ +QS +E + + NK A V+IS+SPQS
Sbjct: 61 LEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKILDANKTAAPGQQKLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
ASLA F ++P KKLT F K LG +FDT+ SR+ +L+E+ EF+ R+++ S
Sbjct: 121 SASLAARFQLNPTDTAKKLTAFFKKLGAHYVFDTAFSRNFSLLESQREFVQRFREQASS- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LPML+SACPGWICYAEK GS I+PYIS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----KQTLPMLASACPGWICYAEKTHGSTIIPYISTARSPQQVMGSLVKDFFAQQQHVTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+I+HVTVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++ +
Sbjct: 236 DKIHHVTVMPCYDKKLEASRPDFF----SQEYQTRD-------VDCVITTGEVFKLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + +V + G SGGY E VFRHAA+ LFG ++ + +K
Sbjct: 285 GVSLSELEPAPLDSVFGSVSVQEPTSHRGGGSGGYLEHVFRHAAQELFGIHVD-EVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLESEGRVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ+K P KEL++ +E +Y V P P V+ LY+ WL SE+A +HT
Sbjct: 404 GQLK-APEIPGKELLQHVERLY-SMVRTEAPEDVPGVQELYEHWLHGKDSERASCLLHTS 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ + W
Sbjct: 462 YHAVEKASSGLSIRW 476
>gi|410985401|ref|XP_003999011.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Felis
catus]
Length = 476
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/495 (44%), Positives = 311/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ+C+ +K K + K + ++
Sbjct: 1 MASPFSGVLQLTDLDDFIGPSQDCIKPMKVDKRSGSGVAKIHIEDDGSYFQVTQDGGTRK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E KISL DCLACSGC+TSAETV++ +QS +E I+ K V++S+SPQS
Sbjct: 61 LEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVIDANKTAAPGQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA FG++P +KLT F K +GV +FDTS SR+ +L+E+ EF+ R++ +S
Sbjct: 121 RASLAAQFGLNPTDTARKLTAFFKKIGVHYVFDTSFSRNFSLLESQREFVQRFRGQADS- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+++PY+S+V+SPQQ +G+ +K Q+ P
Sbjct: 180 ----QQALPVLASACPGWICYAEKTHGSFLIPYLSTVRSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D IYHVTVMPCYDKKLEA+R DF SQ+ RD VD V+TTGEV L++ +
Sbjct: 236 DRIYHVTVMPCYDKKLEASRPDFF----SQDYQTRD-------VDCVVTTGEVFKLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + ++V + G SGGY E VF+HAA+ LFG ++ + ++
Sbjct: 285 GVSLSELEPAPLDSLCSSVSAQEPSSHRGGGSGGYLEHVFQHAARELFGIHVD-EITYRP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ +L FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVVLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ+K P KEL++ +ET+Y V P P ++ LY WL+ GSE+A + +HT
Sbjct: 404 GQLK-APSTPGKELLQRVETLY-SMVRTEAPEDAPGIQELYRCWLQGEGSERAGRLLHTS 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ ++ W
Sbjct: 462 YHAVEKASSSLGIRW 476
>gi|355756418|gb|EHH60026.1| Nuclear prelamin A recognition factor-like protein [Macaca
fascicularis]
Length = 476
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/495 (44%), Positives = 307/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRPGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 DVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKASTGLGIRW 476
>gi|197100706|ref|NP_001124725.1| cytosolic Fe-S cluster assembly factor NARFL [Pongo abelii]
gi|75042593|sp|Q5RF36.1|NARFL_PONAB RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|55725679|emb|CAH89621.1| hypothetical protein [Pongo abelii]
Length = 476
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/495 (44%), Positives = 304/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ K V ++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMVAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----KQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL A+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHLAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKASTGLGIRW 476
>gi|403273198|ref|XP_003928407.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Saimiri
boliviensis boliviensis]
Length = 471
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/495 (43%), Positives = 308/495 (62%), Gaps = 44/495 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL+DFI PSQ C+ V+++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLNDFIGPSQECIKPVNVEKRLGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E K+SL DCLACSGC+TSAETV++ +QS +E ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCVTSAETVLITQQSHEELKKVLDANRVAAPGQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRNFSLLESQREFVRRFR------ 174
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK S+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 175 ----GQALPVLASACPGWICYAEKTHSSFILPHISTARSPQQVMGSLVKDFFAQQQHLTP 230
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D++YHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 231 DKVYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFKLLEEE 279
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 280 GVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIQV-AEVTYKP 338
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 339 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 398
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V + P V+ LY +WL+ +E+A + +HT+
Sbjct: 399 GQLQ-APDRPSRELLQHVERLY-SMVRVEAPEDAAGVQELYTQWLQGTDTERAGRLLHTQ 456
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 457 YHAVEKANTGLGIRW 471
>gi|431906733|gb|ELK10854.1| Cytosolic Fe-S cluster assembly factor NARFL [Pteropus alecto]
Length = 512
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/531 (41%), Positives = 308/531 (58%), Gaps = 75/531 (14%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK------------------------------- 29
M+ FS L++ DL DFI PSQ+C+ +K
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPMKVDKRQGSGMAKIHIEDDGSYFQISQSLAFGI 60
Query: 30 -----------------KATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETV 72
+ ++ P ++ E KISL DCLACSGC+TSAETV
Sbjct: 61 YLSLQPHVCSLGTNDPSGTSVESRKSPAEFDGGTRKLEKAKISLDDCLACSGCVTSAETV 120
Query: 73 MLEKQSLDEFLSNINKGKAVI--------ISLSPQSRASLAEHFGISPLQVFKKLTTFLK 124
++ +QS +E ++ K V+ IS+SPQSRASLA F ++P +KLT F K
Sbjct: 121 LITQQSHEELRKVLDANKTVVPGQQKLVVISVSPQSRASLAVRFQMNPTDTARKLTAFFK 180
Query: 125 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 184
LG +FDT+ SR+ +L+E+ EF+ R++ +S +LP+L+SACPGWICYAEK
Sbjct: 181 KLGAHYVFDTAFSRNFSLLESQREFVRRFRGQADS-----KQALPVLTSACPGWICYAEK 235
Query: 185 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 244
GS I+PYIS+ +SPQQ +G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF
Sbjct: 236 THGSAIIPYISTARSPQQVMGSLVKDFFAQQQHVTPDKIYHVTVMPCYDKKLEASRPDFF 295
Query: 245 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 304
+QE+ RD VD V+TTGEV L++ + V+ LE +PLD + ++V +
Sbjct: 296 ----NQEQQTRD-------VDCVVTTGEVFKLLEEEGVSLSELEPAPLDGLYSSVSTQEP 344
Query: 305 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 364
G SGGY E VFRHAA+ LFG ++ + ++ +RN DF+EV LE EG+ LL FA+
Sbjct: 345 TSHRGGGSGGYLEHVFRHAAQELFGIHVD-EVTYRPLRNKDFQEVTLESEGRVLLHFAVA 403
Query: 365 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 424
YGF+N+QN+V+K+K +C Y +VEVMACPSGCLNGGGQ+K P KEL++ +E +Y
Sbjct: 404 YGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLNGGGQLK-APDTPSKELLQHVERLY-S 461
Query: 425 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
V +P P V+ LY WL GSE+A + +HT YH V K+ + W
Sbjct: 462 MVRTEEPEDVPGVQELYRHWLHGEGSEQASRLLHTSYHAVEKANSGLSIRW 512
>gi|150387422|sp|A4FV58.2|NARFL_BOVIN RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|296473458|tpg|DAA15573.1| TPA: cytosolic Fe-S cluster assembly factor NARFL [Bos taurus]
Length = 476
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/497 (44%), Positives = 307/497 (61%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFIAPSQ+C+ +K + P QVS
Sbjct: 1 MASPFSGALQLTDLDDFIAPSQDCIKPMK--VDRRPGSGVAKIHIEDDGSYFQVSQDGGM 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
++ E KISL DCLACSGC+TSAETV++ +QS +E + K V+IS+SP
Sbjct: 59 KKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF+ R++ +
Sbjct: 119 QSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQREFVRRFRG--Q 176
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+ +K Q+
Sbjct: 177 ADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGSLVKDFFAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD++YH TVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++
Sbjct: 234 TPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + ++ + G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLSELEPAPLDSLCSSASAQEPTSHQGGGSGGYLEHVFRHAAQELFGIHVT-EVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLN
Sbjct: 342 RPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P KEL++ +E +Y V P P ++ LY+ WL+ GSE+A + +H
Sbjct: 402 GGGQLK-APDMPGKELLQQVERLY-GLVRTEAPEDAPGIQELYERWLQGAGSERAGRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ + W
Sbjct: 460 TSYHAVEKAGSGLSIRW 476
>gi|344292240|ref|XP_003417836.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Loxodonta
africana]
Length = 476
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/487 (45%), Positives = 310/487 (63%), Gaps = 39/487 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKK--------ATFKNPDKP---QVSTS-SKQQ 48
M+ FS L++ DL D+I PSQ+C+ +K A D QVS + Q+
Sbjct: 1 MASPFSGALQLTDLDDYIRPSQDCIKPIKVDKRLGSGVAKIHIEDDGSYFQVSQARGTQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E KISL DCLACSGC+TSAE+V++ +QS +E +N K V+IS+SPQS
Sbjct: 61 LEKAKISLNDCLACSGCVTSAESVLIIQQSHEELRKILNANKVAVPDQQKLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
ASLA F ++P +KLT+F K +GV +FDT+ SR+ +L+E+ EF+ R+ QSQ +
Sbjct: 121 VASLAARFQLNPTDTSRKLTSFFKKIGVHYVFDTAFSRNFSLLESQREFVQRF-QSQAN- 178
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
S +LP+L+SACPGWICYAEK GS++LP++S+V+SPQQ +GA +K Q+ P
Sbjct: 179 ---SGQALPVLASACPGWICYAEKTHGSFLLPHLSTVRSPQQVMGALVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D +YHVTVMPCYDKKLEA+R DF +QE RD VD V+TTGE+ L++ +
Sbjct: 236 DRLYHVTVMPCYDKKLEASRPDFF----NQEFQTRD-------VDCVITTGEMFKLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+F LE +PLD + + E G SGGY E VFRHAA LFG + + +K
Sbjct: 285 GVSFPDLEPAPLDVLSSCASAEEPTSHRGGGSGGYLEHVFRHAAWELFG-IHVAEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE +G+ LL FA YGF+N+QN+V+K++ +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLERDGQVLLHFATAYGFRNIQNLVQKLRRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ G+S KEL++ +E +Y E V +P P V+ LY WL+ GS +A ++T+
Sbjct: 404 GQLRALDGRS-KELLQQVERLYGE-VRTQEPRDVPGVQKLYRHWLQGEGSNRAGHLLYTQ 461
Query: 461 YHPVVKS 467
YH V K+
Sbjct: 462 YHAVEKA 468
>gi|335284772|ref|XP_003124717.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Sus
scrofa]
Length = 476
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/495 (44%), Positives = 306/495 (61%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKP---------QVST-SSKQQ 48
M+ FS +++ DL DFIAPSQ+C+ V + K + K QVS ++
Sbjct: 1 MASPFSGAVQLTDLDDFIAPSQDCIKPVKVDKKLGSSGAKIYIEDDGNYFQVSADGGTRK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E KISL DCLACSGC+TSAETV++ +QS +E ++ K V+IS+SPQS
Sbjct: 61 LEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLDANKTAAPGQQRLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
+ASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 121 QASLAVRFQLNPTDTARKLTAFFKRIGAHYVFDTAFSRNFSLLESQREFVRRFR-----G 175
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
S +LP+L+SACPGWICYAEK G +LP+IS+ +SPQQ +GA +K Q+ P
Sbjct: 176 QAGSQQALPVLTSACPGWICYAEKTHGRALLPHISTARSPQQVMGALVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHV VMPC+DKKLEA+R DF SQE RD VD V+TTGEVL L++ +
Sbjct: 236 DKIYHVAVMPCHDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVLKLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ ALE + LD + + V D+ G SGGY E VFR+AA+ LFG + + ++
Sbjct: 285 GVSLSALEPAALDSLCSTVSDQEPTSHRGGGSGGYLEHVFRYAARELFGIHVT-EVTYRP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLNGG
Sbjct: 344 LRNKDLQEVTLEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ+K P KEL++ +E +Y V P P V+ LY WL+ GSE+A + +HT
Sbjct: 404 GQLK-APDTPGKELLQQVERLY-AMVRTQAPEDAPGVQELYRRWLQGEGSERASQLLHTS 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ ++ W
Sbjct: 462 YHAVEKAGSSLNIKW 476
>gi|261824043|ref|NP_001076880.2| cytosolic Fe-S cluster assembly factor NARFL [Bos taurus]
gi|152941142|gb|ABS45008.1| nuclear prelamin A recognition factor-like [Bos taurus]
Length = 476
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/497 (44%), Positives = 306/497 (61%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFIAPSQ+C+ +K + P QVS
Sbjct: 1 MASPFSGALQLTDLDDFIAPSQDCIKPMK--VDRRPGSGVAKIHIEDDGSYFQVSQDGGM 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
++ E KISL DCLACSGC+TSAETV++ +QS +E + K V+IS+SP
Sbjct: 59 KKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF+ R++ +
Sbjct: 119 QSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQREFVRRFRG--Q 176
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+ +K Q+
Sbjct: 177 ADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGSLVKDFFAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD++YH TVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++
Sbjct: 234 TPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
V+ LE +PLD + ++ + G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EGGVSLSELEPAPLDSLCSSASAQEPTSHQGGGSGGYLEHVFRHAAQELFGIHVT-EVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLN
Sbjct: 342 RPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P KEL++ +E +Y V P P ++ LY+ WL+ GSE+A + +H
Sbjct: 402 GGGQLK-APDMPGKELLQQVERLY-GLVRTEAPEDAPGIQELYERWLQGAGSERAGRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ + W
Sbjct: 460 TSYHAVEKAGSGLSIRW 476
>gi|440913441|gb|ELR62891.1| Cytosolic Fe-S cluster assembly factor NARFL [Bos grunniens mutus]
Length = 476
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/497 (44%), Positives = 307/497 (61%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFIAPSQ+C+ +K + P QVS
Sbjct: 1 MASPFSGALQLTDLDDFIAPSQDCIKPMK--VDRRPGSGVAKIHIEDDGSYFQVSQDGGM 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
++ E KISL DCLACSGC+TSAETV++ +QS +E + K V+IS+SP
Sbjct: 59 KKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF+ R++ +
Sbjct: 119 QSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQWEFVRRFRG--Q 176
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+ +K Q+
Sbjct: 177 ADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGSLVKDFFAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD++YH TVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++
Sbjct: 234 TPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + ++ + G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGVSLSELEPAPLDSLCSSASAQEPTSHQGGGSGGYLEHVFRHAAQELFGIHVT-EVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLN
Sbjct: 342 RPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+ GSE+A + +H
Sbjct: 402 GGGQLK-APDMPGKELLQQVERLY-GLVRTEAPEDAPGVQELYERWLQGAGSERAGRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ + W
Sbjct: 460 TSYHAVEKAGSGLSIRW 476
>gi|390345777|ref|XP_788197.3| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Strongylocentrotus purpuratus]
Length = 478
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/495 (44%), Positives = 313/495 (63%), Gaps = 44/495 (8%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST----------SSKQQAEPV 52
FS L++ DL DFI PSQ C+ V ++K K P ++ ++ E
Sbjct: 4 FSGALKLADLDDFITPSQECIKPVKMEKVAGK-PGAIRIEDDGSYFQLDDYGGSRKLEKA 62
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFL------------SNINKGKAVIISLSPQS 100
KI+L DCLACSGCITSAE+V++ +QS +E ++K VI+++SPQS
Sbjct: 63 KITLNDCLACSGCITSAESVLITQQSQEELFRVLEENRKLAANGEVSKQMTVIVTISPQS 122
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA + +S K+LTTF + LGV +FD + SRD +L+E+ EFI R+ +
Sbjct: 123 RASLAAKYKLSLPDTAKRLTTFFRELGVHHVFDETFSRDFSLLESQREFIQRF------N 176
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
++ + SLPML+SACPGW+CYAEK GSYILPYIS+ KSPQQ IG+ +K ++ Q L +P
Sbjct: 177 NQATKGSLPMLASACPGWVCYAEKTHGSYILPYISTTKSPQQIIGSLVKDYVAQSLRVKP 236
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D IYHVTVMPCYDKKLEA+R+DF ++ YR +VD V+T+GEV ++ +
Sbjct: 237 DCIYHVTVMPCYDKKLEASRDDFY------DDVYRTR-----DVDCVITSGEVEAMLAKE 285
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ +E +++ + + G SGG+ E + RHAAK LFGK + G L++K
Sbjct: 286 QVSLSEIEPQEYNRVFPFGESSSVVSHSGGGSGGFHEHILRHAAKELFGKEL-GELQYKV 344
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
++N DF+EV +E +G+ LL+FAL YGF+N+QN+V+K+K K Y FVEVMACP+GC+NGG
Sbjct: 345 MKNKDFKEVTVESDGQPLLRFALAYGFRNIQNLVQKIKRGKSPYHFVEVMACPAGCVNGG 404
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQIK + G + KEL+ +E +Y + P +N +V++LY+EWL GSEKA+ +HT+
Sbjct: 405 GQIKAEEGITAKELLVEVEELY-NSAPTRTPEENEVVQTLYEEWLGGVGSEKARTMLHTQ 463
Query: 461 YHPVVKSITAQLHNW 475
YH + K+ A W
Sbjct: 464 YHALEKNTNALNIKW 478
>gi|332239993|ref|XP_003269175.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor NARFL [Nomascus leucogenys]
Length = 476
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/498 (44%), Positives = 306/498 (61%), Gaps = 45/498 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQVNQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R+++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVQRFQRQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQRLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEVL L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVLRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ L +PLD + + E G SGGY E VFRHAA+ LFG H+ T
Sbjct: 285 GVSLPDLLPAPLDSLYSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGI----HVTNPT 340
Query: 341 I---RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCL
Sbjct: 341 CAPPRNKDFQEVTLEKEGQVLLHFAMVYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCL 400
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
NGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+ SE A + +
Sbjct: 401 NGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLL 458
Query: 458 HTEYHPVVKSITAQLHNW 475
HT+YH V K+ T W
Sbjct: 459 HTQYHAVEKASTGLGIRW 476
>gi|73959191|ref|XP_547207.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL isoform 1
[Canis lupus familiaris]
Length = 476
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/497 (44%), Positives = 309/497 (62%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVS-TSSK 46
M+ FS L++ DL DFI PSQ+C+ +K + P QVS
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPVK--VDRRPGSGVAKIHIEDDGSYFQVSPDGGT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E KISL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QRLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLDANKTAAPGQQRLVVVSVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F +SP +KLT F K +GV +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 119 QSRASLAARFQLSPTDTARKLTAFFKKIGVHYVFDTAFSRNFSLLESQREFVQRFR---- 174
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+ S +LP+L+SACPGWICYAEK G++++PY+S+ +SPQQ +G+ +K Q+
Sbjct: 175 -EQTNSTQALPVLTSACPGWICYAEKTHGNFLIPYLSTARSPQQVMGSLVKDFFAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD IYHVTVMPCYDKKLEA+R DF +QE RD VD V+TTGEV L++
Sbjct: 234 TPDRIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVVTTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + +++ + G SGGY E VF+HAA+ LFG ++ + +
Sbjct: 283 EEGVSLSELEPAPLDSLCSSMSAQEPSSHRGGGSGGYLEHVFQHAARELFGIHVD-EVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLN
Sbjct: 342 RPLRNKDFQEVTLEKEGRVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P KEL++ +E +Y V P P V+ LY WL+ GSE+A + +H
Sbjct: 402 GGGQLK-APDMPSKELLQQVEMLY-GMVRTEVPENVPGVQELYRSWLQGEGSEQAGRLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ ++ W
Sbjct: 460 TSYHAVEKASSSLSIRW 476
>gi|114660220|ref|XP_510719.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL isoform 7
[Pan troglodytes]
gi|397474843|ref|XP_003808866.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Pan
paniscus]
gi|410287800|gb|JAA22500.1| nuclear prelamin A recognition factor-like [Pan troglodytes]
Length = 476
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/495 (44%), Positives = 307/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ P
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ +
Sbjct: 236 DKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V+ LE +PLD + + E G SGGY E VFRHAA+ LFG + + +K
Sbjct: 285 GVSLPDLEPAPLDSLCSGASAEEPSSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQ++ P + +EL++ +E +Y V P P VR LY WL+ SE A + +HT+
Sbjct: 404 GQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVRELYTHWLQGTDSECAGRLLHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K+ T W
Sbjct: 462 YHAVEKASTGLGIRW 476
>gi|443689646|gb|ELT92002.1| hypothetical protein CAPTEDRAFT_150962 [Capitella teleta]
Length = 476
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/495 (43%), Positives = 301/495 (60%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTSSKQ--------QA 49
M+ +FS L++ DL DFI PSQ C+ +K K+ K + S + +
Sbjct: 1 MASRFSGALQLTDLDDFITPSQECIKPVKVEKKSGLGAKIKIENDGSYMEVDEGGYEVKL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEF---------LSNINKGKAVIISLSPQS 100
+ +ISL DCLACSGC+TSAE+V++ +QS +E + + + K +++SLS QS
Sbjct: 61 QKAQISLTDCLACSGCVTSAESVLISEQSQEELYKVLSQNAAIEDASARKMIVVSLSHQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA F +S + +L+TF K +G ++D S +RD++LIE+C EF+ R+
Sbjct: 121 ITSLAAKFSLSANEAAVRLSTFFKQIGSDRVYDISIARDISLIESCREFVKRHS------ 174
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
++ + SLPML+SACPGW+CYAEK GSYILP+I+S KSPQQ +G+ +K + G
Sbjct: 175 NQATKGSLPMLASACPGWVCYAEKTHGSYILPHIASTKSPQQIMGSLVKDFVSSSFGLSA 234
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D IYH+TVMPC+DKKLEA+R DF DE +VD V++TGEV ++ +
Sbjct: 235 DRIYHITVMPCFDKKLEASRTDFY-----------DEICSTKDVDCVISTGEVEQMLLKE 283
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
V L+ + LD + N D+ G SGGY E V R+AAK L G ++ L++K
Sbjct: 284 NVALNDLDSTSLDSIFGNSDEGVLASHQGGGSGGYLEHVMRYAAKELHGIEVD-ELKYKV 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF+EV +E + K +LKFA+ YGF+N+QNIV+K+K K YQ+VE+MACPSGCLNGG
Sbjct: 343 MRNQDFQEVMVEKDSKVVLKFAIAYGFRNIQNIVQKIKRGKLPYQYVEIMACPSGCLNGG 402
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQI+P+ ++PK+L+ L IY N+ PF V LYD WL SEKA + +HT+
Sbjct: 403 GQIRPEDNETPKDLLSRLNEIY-RNMPTRMPFHQNEVEDLYDNWLGGVDSEKANRLLHTK 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K TA W
Sbjct: 462 YHEVEKINTALNIKW 476
>gi|74211319|dbj|BAE26421.1| unnamed protein product [Mus musculus]
Length = 492
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 226/513 (44%), Positives = 311/513 (60%), Gaps = 59/513 (11%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVSTSSK- 46
M+ FS L++ DL DFI PSQNC+ +K A K P QV+ +
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQNCIKPVKVA--KKPGSGIAKIHIEDDGSYFQVNQDGRT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E K+SL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 59 QKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF+ R+++
Sbjct: 119 QSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFREQAN 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K Q+
Sbjct: 179 SRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQLL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVFRLLE 282
Query: 279 LKAVNFEALEESPLDKM----------------LTNVDDEGHLYGVAGSSGGYAETVFRH 322
+ V+ LE +PLD + ++V E G SGGY E VFRH
Sbjct: 283 EEGVSLTELEPAPLDGLDLSCVAPPALTRPSPRTSSVSAEEPSSHRGGGSGGYLEHVFRH 342
Query: 323 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 382
AA+ LFG + + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C
Sbjct: 343 AAQELFGIHV-AEVTYQPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRC 401
Query: 383 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 442
Y +VEVMACPSGCLNGGGQ+K P EL++ LE +Y V P P V+ LY
Sbjct: 402 PYHYVEVMACPSGCLNGGGQLK-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQ 459
Query: 443 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
WL+ SE+A + +HT+YH V K + W
Sbjct: 460 HWLQGEDSERASRLLHTQYHAVEKPSSGLSIRW 492
>gi|327280139|ref|XP_003224811.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Anolis carolinensis]
Length = 498
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/438 (47%), Positives = 297/438 (67%), Gaps = 28/438 (6%)
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
++ E KI+L DCLACSGC+TSAE++++ +QS +E L ++ K V++S+SP
Sbjct: 80 RKLEKAKITLNDCLACSGCVTSAESILVAQQSHEELLRVLDANKTLEPASRKLVVVSVSP 139
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++PL KKLT F K+LGV +FDT+ SR+ +LIE+ EF+ R+++ E
Sbjct: 140 QSRASLAAKFQLTPLDTAKKLTAFFKTLGVDFVFDTTFSRNFSLIESQREFVQRFRRRTE 199
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+ +LPML++ACPGWICYAEK GS+ILPYIS+ KSPQQ +G+ +K H ++
Sbjct: 200 DKE-----ALPMLAAACPGWICYAEKTHGSFILPYISTAKSPQQVMGSLVKSHFAKQQNV 254
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
P +IYHV VMPCYDKKLEA+R DF QE R EVD V+TTGEVL L++
Sbjct: 255 APSQIYHVAVMPCYDKKLEASRPDFFL----QEHQTR-------EVDCVITTGEVLKLLE 303
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHL-YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ + ++ +PLD + ++ ++ L G SGGY E +++HAAK LFG +E +
Sbjct: 304 QEGGSLSEVDSAPLDAIFSDPSEDRLLTGHSGGGSGGYLEHIYKHAAKELFGVQVE-EIR 362
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
+KT++N DF+EVALE +GKTLL FAL YGF+N+QN+V+K+K K Y ++EVMACPSGCL
Sbjct: 363 YKTLKNKDFQEVALEKDGKTLLLFALAYGFRNIQNVVQKLKRGKSPYHYIEVMACPSGCL 422
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
NGGGQIK + G++ K+L++ +E++Y E+V DP N V LY++WL P E+ ++ +
Sbjct: 423 NGGGQIKAE-GEASKDLLQEVESVY-ESVPPEDPETNRTVADLYEQWLGGPSKEQTREAL 480
Query: 458 HTEYHPVVKSITAQLHNW 475
HT+YH V ++ T W
Sbjct: 481 HTQYHAVERANTGFGIKW 498
>gi|307103448|gb|EFN51708.1| hypothetical protein CHLNCDRAFT_139858 [Chlorella variabilis]
Length = 545
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 301/554 (54%), Gaps = 94/554 (16%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA-----------EPVK 53
FS ++IGDL+DFIAPSQ CVVSL+ +V T Q +PVK
Sbjct: 3 FSGAVKIGDLNDFIAPSQACVVSLEGGKLAAASDAEVGTVQLQPRGFSQTLPAAVDQPVK 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP 112
+SL DCLACSGC+TSAETV+L+ QS E L + + V++SLSPQS A LA G+
Sbjct: 63 VSLHDCLACSGCVTSAETVLLQHQSAGELLQRLADPSWTVVVSLSPQSVAVLAALHGLPA 122
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES------------- 159
+ +L FL+ LG ++FD + +R L L EA +EF+ RY QS
Sbjct: 123 AECAARLVAFLRQLGAAAVFDIAAARQLALAEAAHEFVQRYSQSARGTAALSAAAAAAAA 182
Query: 160 ----------------DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
LPML+SACPGW+CYAEK G ++LPYI++ KSPQ
Sbjct: 183 AAGEDAMDVDAAVAGRGSRDGGGPLPMLASACPGWVCYAEKTHGEHVLPYIATGKSPQAV 242
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G +K C G P +YH T+MPCYDKKLEAAREDF G ++PE
Sbjct: 243 MGTLVKRRWCMAAGLLPAWVYHCTIMPCYDKKLEAAREDFNL-----------PGTQVPE 291
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKML--------------------------- 296
D VL T E+ +L++ + + +L+ +P D M+
Sbjct: 292 TDCVLATTELQELLEQRQADLGSLQGAPFDSMVPLPAAGAAAAPACNGSDGAGASSNGWH 351
Query: 297 --------TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSDFR 347
++ D G + SGGY E VFR AA+ LFG+ + G L + RN+D R
Sbjct: 352 AAPKPPTSSSGSDAGGTLPASSGSGGYLEYVFRAAARQLFGRQLPAGPLAMRVGRNADLR 411
Query: 348 EVALEVEGKT--LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
EV LE G LL+FA YGF+N+Q ++RKVK+ +C+Y +VEVMACPSGCLNGGGQ KP
Sbjct: 412 EVTLEAPGGGPPLLRFAAAYGFRNIQGLMRKVKLGRCEYDYVEVMACPSGCLNGGGQPKP 471
Query: 406 KPGQSPKELIKTLETIYLE---NVMLADPFKNPLVRSLYDEWLE-QPGSEKAKKHVHTEY 461
GQ+ +L++ LET+Y + P +P V+ LY EW++ QPGSE A++ +H +Y
Sbjct: 472 AAGQTSAQLLEQLETLYADAGSGHGAVQPDADPAVQQLYHEWVQGQPGSEAARQLLHMQY 531
Query: 462 HPVVKSITAQLHNW 475
H K++TA L +W
Sbjct: 532 HKREKTVTATLADW 545
>gi|449281351|gb|EMC88431.1| Cytosolic Fe-S cluster assembly factor NARFL [Columba livia]
Length = 478
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/497 (45%), Positives = 316/497 (63%), Gaps = 41/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSK----------QQ 48
M+ FS L++ DL DFI P+Q C+ V ++K K K ++ Q+
Sbjct: 1 MASPFSGVLQLADLDDFIGPAQECIKPVKVEKKPGKAAAKIRIEADGSYFQINQDGEAQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--------NKGKAVIISLSPQS 100
E KI+L DCLACSGCITSAE+V++ +QS +E + N+ K V+IS+SPQS
Sbjct: 61 LEKAKITLNDCLACSGCITSAESVLITQQSHEELCKMLTFNKTAAPNEQKLVVISVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLG--VKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
RASLA + + +KLT F KSLG V +FDT+ SR+ +L+E+ EF+ R+++ +
Sbjct: 121 RASLAAKCKLGVQETAQKLTAFFKSLGKCVHYVFDTTFSRNFSLLESQREFVKRFQK--Q 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S+D+++ LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +G+ IK H ++
Sbjct: 179 SEDKKA---LPMLASACPGWICYAEKTHGSFIIPYISTTKSPQQVMGSLIKGHFAEQQHL 235
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD IYHVTVMPCYDKKLEA+R DF +QE RD VD V+TTGEVL L++
Sbjct: 236 TPDRIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVITTGEVLKLLE 284
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ ++ + LD M + E G SGGY E ++++AAK LFG ++ +++
Sbjct: 285 QEGVSLSDVDPAALDTMFGSAAGEELTGHAGGGSGGYLEHIYKYAAKELFGIQVD-TIQY 343
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K ++N DF+EV LE +G LL+FAL YGF+N+QN+V+K+K + Y +VEVMACPSGCLN
Sbjct: 344 KPLKNKDFQEVTLEKDGAVLLQFALAYGFRNIQNLVQKLKRGRSPYHYVEVMACPSGCLN 403
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQIK G+S KE ++ +E +Y E++ P +N V+ LY++WL GS KA + +H
Sbjct: 404 GGGQIKLD-GESSKEQLQQVERLY-ESLQTEVPEENRAVQELYEQWLGGTGSGKAAEALH 461
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ W
Sbjct: 462 TGYHAVEKTSAGFNIKW 478
>gi|395835676|ref|XP_003790801.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Otolemur
garnettii]
Length = 476
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/497 (43%), Positives = 304/497 (61%), Gaps = 43/497 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFI PSQ+C+ +K K P+ QV+
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCIKPVK--VDKRPESGIAKIHIEDDGSYIQVNQDGGT 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
++ E K+SL DCLACSGC+TSAETV++ +QS E ++ K V++S+SP
Sbjct: 59 RRLEKAKVSLNDCLACSGCVTSAETVLVTQQSHKELRKALDANKMAAPSQQRLVVVSVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA ++P +KLT+F K +G +FDT+ SR+ +L+E+ EF+ R+++
Sbjct: 119 QSRASLAVQLQLNPTDTARKLTSFFKKIGAHFVFDTAFSRNFSLLESQREFVQRFREQAS 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S +LP+L+SACPGWICYAEK S+I+PY+S+ +SPQQ +G+ +K + Q+
Sbjct: 179 SPQ-----ALPVLASACPGWICYAEKTHSSFIIPYLSTARSPQQVMGSLVKDFLAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTTGEV L++
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLTTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ + LE + LD + ++V E G SGGY E VFRHAA+ LFG + + +
Sbjct: 283 EEGILLSELEPALLDGLSSSVSAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTY 341
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE G+ LL+FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLN
Sbjct: 342 RPLRNKDFQEVTLEQGGQVLLRFAAVYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLN 401
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K S +EL++ +E +Y V P P V LY +WL+ SE+A +H
Sbjct: 402 GGGQLKALDTPS-RELLQHVERLY-SMVRTEAPEDVPGVWELYQQWLQGEASERASHLLH 459
Query: 459 TEYHPVVKSITAQLHNW 475
T+YH V K+ + W
Sbjct: 460 TQYHAVEKASSGLSIRW 476
>gi|410340689|gb|JAA39291.1| nuclear prelamin A recognition factor-like [Pan troglodytes]
Length = 483
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/485 (44%), Positives = 301/485 (62%), Gaps = 39/485 (8%)
Query: 11 IGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQAEPVKISLKD 58
+ DL DFI PSQ C+ V ++K K ++ ++ E K+SL D
Sbjct: 18 MTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLND 77
Query: 59 CLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQSRASLAEHFGI 110
CLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQSRASLA F +
Sbjct: 78 CLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQL 137
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ + +LP+
Sbjct: 138 NPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC-----RQALPL 192
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+ PD+IYHVTVMP
Sbjct: 193 LASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMP 252
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
CYDKKLEA+R DF +QE RD VD VLTTGEV L++ + V+ LE +
Sbjct: 253 CYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEEGVSLPDLEPA 301
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
PLD + + E G SGGY E VFRHAA+ LFG + + +K +RN DF+EV
Sbjct: 302 PLDSLCSGASAEEPSSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKPLRNKDFQEVT 360
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGGGQ++ P +
Sbjct: 361 LEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQ-APDRP 419
Query: 411 PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITA 470
+EL++ +E +Y V P P VR LY WL+ SE A + +HT+YH V K+ T
Sbjct: 420 SRELLQHVERLY-GMVRAEAPEDAPGVRELYTHWLQGTDSECAGRLLHTQYHAVEKASTG 478
Query: 471 QLHNW 475
W
Sbjct: 479 LGIRW 483
>gi|281341565|gb|EFB17149.1| hypothetical protein PANDA_008943 [Ailuropoda melanoleuca]
Length = 482
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 281/437 (64%), Gaps = 27/437 (6%)
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q+ E KISL DCLACSGC+TSAETV++ +QS +E ++ K V++S+SP
Sbjct: 65 QKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLDANKTAAPGQQRLVVVSVSP 124
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P KKLT F K +GV +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 125 QSRASLATRFQLTPTDTAKKLTAFFKKIGVHYVFDTAFSRNFSLLESQREFVQRFR---- 180
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S +LP+L+SACPGWICYAEK GS+++PY+S+ +SPQQ +G+ +K Q+
Sbjct: 181 -GQANSTQALPVLTSACPGWICYAEKTHGSFLIPYLSTARSPQQVMGSLVKDFFAQQQRL 239
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD IYHVTVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++
Sbjct: 240 TPDRIYHVTVMPCYDKKLEASRSDFF----SQEHQTRD-------VDCVVTTGEVFKLLE 288
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ LE +PLD + + + G SGGY E VF+HAA+ LFG ++ + +
Sbjct: 289 EEGVSLLELEPAPLDSLCNSASAQEPTSHRGGGSGGYLEHVFQHAARELFGIHVD-EVTY 347
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K++ +C Y +VEVMACP+GCLN
Sbjct: 348 RPLRNKDFQEVTLEKEGRILLHFAAAYGFRNIQNLVQKLRRGRCPYHYVEVMACPAGCLN 407
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+ GSE+A + +H
Sbjct: 408 GGGQLK-APDAPSKELLQHVEMLY-GMVRTEAPEDAPGVQELYECWLQGEGSERAGRLLH 465
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K+ + W
Sbjct: 466 TGYHAVEKASSGLSIRW 482
>gi|163915151|ref|NP_001106557.1| cytosolic Fe-S cluster assembly factor narfl [Xenopus (Silurana)
tropicalis]
gi|259511276|sp|A8WH18.1|NARFL_XENTR RecName: Full=Cytosolic Fe-S cluster assembly factor narfl;
AltName: Full=Nuclear prelamin A recognition factor-like
protein
gi|159155500|gb|AAI54938.1| LOC100127749 protein [Xenopus (Silurana) tropicalis]
Length = 476
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/495 (44%), Positives = 310/495 (62%), Gaps = 39/495 (7%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST----------SSKQQ 48
M+ FS L++ DL DFI PSQ C+ + ++K + K Q+ + ++
Sbjct: 1 MASSFSGVLQLTDLDDFIGPSQECIKPIKVEKKAGRAAAKIQIEDDGSYVQINPEGAARK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E KI+L DCLACSGC+TSAET+++ +QS +E + + K V++S+SPQS
Sbjct: 61 LEKAKITLNDCLACSGCVTSAETILITQQSHEELYKILKQNKTENPLEHKVVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
ASLA F + +KLT F K LGV +FDT+ SR+ +L+E+ EFI R+K+ +E
Sbjct: 121 WASLAARFNLIMQDTAQKLTAFFKQLGVHHVFDTNFSRNFSLLESQREFIQRFKRQKED- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
SLPML+SACPGWICYAEK GS+ILPYISS KSPQQ +G+ +K H ++ +P
Sbjct: 180 ----KKSLPMLASACPGWICYAEKTHGSFILPYISSTKSPQQVMGSLVKSHFAKEKNLKP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
++IYHVTVMPCYDKKLEA+R DF Y E E EVD V+TTGEVL +++ +
Sbjct: 236 NQIYHVTVMPCYDKKLEASRPDF----------YNQE-YETREVDCVITTGEVLRMLEQE 284
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
++ ++ SPLD + + E + G SGGY E VFRHAA+ LFG ++ + +K
Sbjct: 285 GLSLSDVDPSPLDTLFGSAVQEEPVGHQGGGSGGYLEHVFRHAAQELFGVHVDT-VVYKP 343
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
++N DF+EV LE +G +L FAL YGF+N+QN+V+K+K +C Y +VEVMACPSGCLNGG
Sbjct: 344 LKNKDFQEVTLEQDGNVVLHFALAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLNGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
GQIK + G+ K+L++ +E +Y V P + V LY +WLE S KA++ +HT+
Sbjct: 404 GQIKAE-GEGSKDLLQRVEDLY-NTVRTERPEEREEVAQLYGDWLEDKDSAKARQALHTQ 461
Query: 461 YHPVVKSITAQLHNW 475
YH V K + W
Sbjct: 462 YHAVEKINSGLTIKW 476
>gi|14336719|gb|AAK61251.1|AE006464_19 Weakly similar to ORF YNL240c [S.cerevisiae] [Homo sapiens]
gi|119606130|gb|EAW85724.1| nuclear prelamin A recognition factor-like, isoform CRA_c [Homo
sapiens]
Length = 525
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/445 (45%), Positives = 284/445 (63%), Gaps = 27/445 (6%)
Query: 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGK 90
P ++ E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ +
Sbjct: 100 PYSPDGGTRRLEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQR 159
Query: 91 AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+
Sbjct: 160 LVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFV 219
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 220 RRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKD 274
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLTT
Sbjct: 275 FFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTT 323
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
GEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 324 GEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGI 383
Query: 331 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVM
Sbjct: 384 HV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVM 442
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGS 450
ACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+ S
Sbjct: 443 ACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDS 500
Query: 451 EKAKKHVHTEYHPVVKSITAQLHNW 475
E A + +HT+YH V K+ T W
Sbjct: 501 ECAGRLLHTQYHAVEKASTGLGIRW 525
>gi|66803034|ref|XP_635360.1| nuclear prelamin A recognition factor-like protein [Dictyostelium
discoideum AX4]
gi|74851536|sp|Q54F30.1|NARF_DICDI RecName: Full=Probable cytosolic Fe-S cluster assembly factor narfl
gi|60463676|gb|EAL61858.1| nuclear prelamin A recognition factor-like protein [Dictyostelium
discoideum AX4]
Length = 522
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/529 (42%), Positives = 316/529 (59%), Gaps = 68/529 (12%)
Query: 3 EKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTS----------SKQQAE 50
+KFS L++ + D+I PSQ C+ V ++K+ K Q+ + +K+ E
Sbjct: 6 DKFSSVLKLTEF-DYIVPSQICIKPVEIEKSNDSGNSKIQIESDGRYVEISEDGTKKSLE 64
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFL----------SNINKGKAVIISLSPQS 100
I+L DCLACSGCITSAE+V++ QS+ EFL +N ++ K ++I+LSPQS
Sbjct: 65 KATITLNDCLACSGCITSAESVLITAQSISEFLLNVNNNNDSNNNQDEKKTIVITLSPQS 124
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS--QE 158
RASLA HF IS L V KKL TF K L + +FD+S SRD +L+E+ EF+ARYK++
Sbjct: 125 RASLASHFKISTLSVVKKLKTFFKKLNINYLFDSSFSRDFSLLESAAEFVARYKKTYINN 184
Query: 159 SDDERSNS----SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
++DE + LPMLSSACPGWICYAEK G +ILP+IS+ KSPQQ +G +K++ +
Sbjct: 185 NNDEETGKLEPFPLPMLSSACPGWICYAEKTHGEFILPFISTTKSPQQIMGTLVKYYFTE 244
Query: 215 KL--------------------GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
K+ +P IYHVT+MPCYDKKLEA+R DF Y
Sbjct: 245 KILDNNTNNNNNNNNNNNNNNSKIKPSNIYHVTIMPCYDKKLEASRNDF----------Y 294
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE-SPLDKMLTNVDDEGHLYGVAGSSG 313
D + +VD VL+T E+LDL + K ++F +LEE + +++ + Y + GSSG
Sbjct: 295 ND-IFKTKDVDCVLSTTEILDLFKEKEIDFLSLEEDNSIEEQFFQLSPSNQFYSINGSSG 353
Query: 314 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNI 373
GY E ++++AAK LF I +++K RN DF+EV+LE++GK +L FA YGF+N+QNI
Sbjct: 354 GYLEFIYKYAAKELFNVDIVEPIQYKIGRNQDFKEVSLEIDGKKVLNFAQAYGFRNIQNI 413
Query: 374 VRKVKMR-------KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 426
VRK+K Y FVE+MACPSGC+NGGGQIK + K ++ E Y ENV
Sbjct: 414 VRKIKTNITTKKDTNSQYDFVEIMACPSGCINGGGQIKSDAIKENKAILLDSEEKYNENV 473
Query: 427 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
+ P N V+++Y+ WL S +K ++HT+YH + K+ A W
Sbjct: 474 IFRQPIDNQSVQNIYNTWLNGCFSTDSKTNLHTQYHRIEKTTNALNIKW 522
>gi|156545553|ref|XP_001605725.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AAEL012261-like [Nasonia vitripennis]
Length = 484
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/501 (42%), Positives = 310/501 (61%), Gaps = 43/501 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----STSSKQQAEP--- 51
M+ +FS L++ +L DFI PSQ C+ V +KK K K ++ S + + P
Sbjct: 1 MASRFSGALQLTNLDDFITPSQECIKPVEIKKNKSKPGSKIKIQDDGSYAEVLEGGPLTK 60
Query: 52 ---VKISLKDCLACSGCITSAETVMLEKQSLDEFL----SNINKGKA-------VIISLS 97
V+I+L DCLACSGCITSAE+V++ +QS +E L I K KA +++SLS
Sbjct: 61 LTKVEITLADCLACSGCITSAESVLVTQQSQEELLKVFKDKIEKQKAGDENVKFIVVSLS 120
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
Q SLAE + ++P + LT + KS+G + D + + DL+L+E+ EF+ RYK ++
Sbjct: 121 IQPILSLAERYKLTPEEAALHLTGYFKSMGADMVLDMTVAEDLSLVESAKEFVERYKAAK 180
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
E S + LPML+S+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ G
Sbjct: 181 EG----SKNQLPMLASSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLADVQG 236
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P+++YHVT+MPCYDKKLEA+REDF L E +VD V+T+ E+ ++
Sbjct: 237 LSPEQVYHVTLMPCYDKKLEASREDFYNSLK-----------ETRDVDCVITSIELEQML 285
Query: 278 QLKAVNFEALEESPLDKMLTNVDDE--GHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEG 334
+ + + ++ ++K ++ E G L G GS SGGYA+ +F +AAK LF +V +
Sbjct: 286 TQQDKSLQDFDKGEIEKPFKTMELENSGVLLGHQGSGSGGYADFIFHYAAKYLF-QVTDA 344
Query: 335 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 394
LE+K++RN DF+E LE +G+ LLKFA+ GF+N+QN+V+K+K K Y +VEVMACP+
Sbjct: 345 KLEYKSLRNPDFQEAVLEKDGQVLLKFAIANGFRNIQNLVQKLKRGKSPYDYVEVMACPT 404
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GCLNGG QI+P+ G P+EL LE Y + +DP KN V LY WLE S+KA
Sbjct: 405 GCLNGGAQIRPQDGTQPRELALKLENEY-HQLPKSDPEKNQAVADLYKTWLEGENSDKAN 463
Query: 455 KHVHTEYHPVVKSITAQLHNW 475
++HT+YH + K A W
Sbjct: 464 AYLHTQYHEIEKMNVALSIKW 484
>gi|291226566|ref|XP_002733248.1| PREDICTED: nuclear prelamin A recognition factor-like [Saccoglossus
kowalevskii]
Length = 479
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/498 (42%), Positives = 300/498 (60%), Gaps = 42/498 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK-------KATFKNPDKPQV----STSSKQQA 49
M+ FS L++ DL DFI PSQ CV +K + K D + +
Sbjct: 1 MASHFSGALQLTDLDDFITPSQECVKPVKVEKSAGGRGRIKIEDDGSYFHINESGEATKL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN------------KGKAVIISLS 97
+ +I+L DCLACSGCITSAE+V++ +QS +E I K K +I+S+S
Sbjct: 61 KKAEITLDDCLACSGCITSAESVLITQQSQEELYKAIEENRIHCKNGTPEKEKVIIVSVS 120
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
PQSRASLA +G+S K+T F K++GV +FDT+ +RD +LIE+ EFI R+K+S
Sbjct: 121 PQSRASLAAKYGLSVYDAAAKITGFFKNIGVHYVFDTTFTRDFSLIESGREFITRFKKST 180
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
+ SLPML+SACPGW+CYAEK GSYILPYIS+ KSPQQ +G+ +K + +K
Sbjct: 181 Q------KGSLPMLASACPGWVCYAEKTHGSYILPYISTTKSPQQIMGSLVKDYFAKKHN 234
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
D+IYHVTVMPC+DKKLEA+R+DF + YR +VD V+T+GEV ++
Sbjct: 235 KTADQIYHVTVMPCFDKKLEASRQDFY------NDIYRTR-----DVDCVITSGEVEVML 283
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ + V +E LD + T ++ + SGGY E + +HAA L+G ++ ++
Sbjct: 284 EKEGVLLADVESHDLDTIFTRSENNEVIGHGGSGSGGYLEYILKHAALELYGHQVDS-IQ 342
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
+K +RN DF+EV LEV GK LKFA+ GF+N+QN+V+K+K K Y FVEVMACPSGCL
Sbjct: 343 YKMLRNKDFKEVTLEVNGKVELKFAIANGFRNIQNLVQKIKRGKSPYHFVEVMACPSGCL 402
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
NGGGQI+ + Q +L+ +E IY + P +N + +LY +WL S+K + +
Sbjct: 403 NGGGQIRAENLQGANDLLTKVEEIY-HSAQTRTPQENGAMETLYADWLGGMDSDKMRTML 461
Query: 458 HTEYHPVVKSITAQLHNW 475
HT+YH + K +A W
Sbjct: 462 HTQYHEIEKDTSALNLKW 479
>gi|159470443|ref|XP_001693369.1| iron hydrogenase/prelamin A binding protein [Chlamydomonas
reinhardtii]
gi|158277627|gb|EDP03395.1| iron hydrogenase/prelamin A binding protein [Chlamydomonas
reinhardtii]
Length = 479
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/487 (42%), Positives = 302/487 (62%), Gaps = 27/487 (5%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACS 63
+FS T+R+ DL+D+IAPSQ+CVV+L K S ++ +PVK+SL DCLACS
Sbjct: 5 EFSSTIRVADLNDYIAPSQDCVVALNG---KLKTVEVSSLNAPAPGDPVKVSLHDCLACS 61
Query: 64 GCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTF 122
GCITSAETV+L++QS DEFL+ + + AV++++SPQSRA+LA +FG+SP +L +
Sbjct: 62 GCITSAETVLLQQQSGDEFLAKLADPTLAVVVTVSPQSRAALAAYFGLSPAATLARLAGW 121
Query: 123 LKSLGVKSIFDTSCSRDLTLIEACNEFIA---RYKQSQESDDERSNSSLPMLSSACPGWI 179
LK LG +++D + +RDL L+E EF+ R + E + LPM++SACPGW+
Sbjct: 122 LKGLGAAAVWDLTTARDLVLLEEAAEFVGSSGRPAAAVAGAVEEAPGPLPMMASACPGWV 181
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEK G+ ++PY+S+ +SPQ +G +K + G P +YHVTVMPCYDKKLEA+
Sbjct: 182 CYAEKTHGAKVIPYMSTTRSPQGAMGGLVKSLVAAAWGVSPAALYHVTVMPCYDKKLEAS 241
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
R++ T DE + + ++ V+ + + D +
Sbjct: 242 RDELT--------TTSDEAAAVAAGSVAVAAAGAGGGSDME-VDGGEVAAAAQDGGVLLP 292
Query: 300 DDEGHLYGV--AGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVALEVEG- 355
E LYG+ A SSGGY++ VFR AA+ L G ++ G L ++ +RN+DF+E+ LEV
Sbjct: 293 PSEDRLYGLRDASSSGGYSDFVFRAAARELAGVELPAGPLPWRALRNADFQELTLEVPAL 352
Query: 356 --KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP--GQSP 411
+L+FA YGF+N+Q ++R+VKM +C YQ+VEVMACPSGCLNGGGQ KP+P G P
Sbjct: 353 GPGQVLRFARVYGFRNIQTLLRQVKMGRCAYQYVEVMACPSGCLNGGGQPKPRPGLGAGP 412
Query: 412 KELIKTLETIYL-ENVMLADPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVKSI- 468
++L++ +E Y E+V P NP V LY WL +PGS A++ +HT Y K++
Sbjct: 413 QQLLEQVEAAYAHEDVAARWPTDNPAVALLYSRWLGGRPGSAAARRLLHTSYREREKTVN 472
Query: 469 TAQLHNW 475
TA + NW
Sbjct: 473 TAMVANW 479
>gi|150387423|sp|A2RRV9.1|NARFL_DANRE RecName: Full=Cytosolic Fe-S cluster assembly factor narfl;
AltName: Full=Nuclear prelamin A recognition factor-like
protein
gi|124297681|gb|AAI31875.1| Zgc:158422 [Danio rerio]
Length = 411
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/424 (49%), Positives = 283/424 (66%), Gaps = 28/424 (6%)
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQSRASLAEHFGISP 112
+ SGCITSAE+V++ +QS +E + K V ++S+SPQSRASLA H+GI
Sbjct: 7 SISGCITSAESVLITQQSHEELYRVLRHNKQVSSTEQKVVVVSVSPQSRASLAAHYGIGS 66
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+V +KLT+FLK LGV +FDT+ SR +LIE+ EF+ R+ Q +E+D + +LPML+
Sbjct: 67 SEVARKLTSFLKHLGVHHVFDTAFSRSFSLIESQREFLQRFSQ-READKK----ALPMLA 121
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
SACPGWICYAEK G +ILPYIS+ +SPQQ +G+ +K + + G P IYHVTVMPCY
Sbjct: 122 SACPGWICYAEKTHGEFILPYISTTRSPQQIMGSLVKGYFASQKGVSPQMIYHVTVMPCY 181
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
DKKLEA+R DF S+ ET EVD V+T+GEVL +++ + V+ ++ +PL
Sbjct: 182 DKKLEASRPDFYL---SEHET--------REVDCVITSGEVLKMLEEEKVSLRDVQPAPL 230
Query: 293 DKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 351
D M +NV E L G AGS SGGY +++HAAK LFG ++ L +KT++N DF+EV L
Sbjct: 231 DTMFSNVCGE-ELLGHAGSGSGGYLHHIYKHAAKQLFGVDVD-ELTYKTMKNKDFQEVTL 288
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
E +G+ LLKFA YGF+N+QN+V+K+K K Y FVEVMACPSGCLNGGGQ+KP QS
Sbjct: 289 EKDGQVLLKFAAVYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGCLNGGGQLKPSADQSN 348
Query: 412 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 471
KEL++ +E +Y + + P + V LY WLE G EKA++ +HT+YH V K+
Sbjct: 349 KELLQQVEEVY-RSEHPSVPEDDSQVAELYQSWLESVGEEKARQLLHTQYHAVEKTANGL 407
Query: 472 LHNW 475
W
Sbjct: 408 SIKW 411
>gi|348537870|ref|XP_003456416.1| PREDICTED: cytosolic Fe-S cluster assembly factor narfl-like
isoform 2 [Oreochromis niloticus]
Length = 411
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 273/424 (64%), Gaps = 28/424 (6%)
Query: 61 ACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQSRASLAEHFGISP 112
+ SGCITSAE+V++ +QS +E ++N + K V++S+SPQ+RASLA H+ +S
Sbjct: 7 STSGCITSAESVLITQQSHEELFKVLRRNKVANETEQKTVVVSVSPQARASLAAHYNLSS 66
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ ++LT+F K LGV +FDTS SR +L+E+ EF+ R+++ Q+ + +LPML+
Sbjct: 67 SEAGRRLTSFFKGLGVHHVFDTSFSRTFSLLESQREFVERFQRKQQD-----SKALPMLT 121
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
SACPGWICYAEK G YILPYIS+ +SPQQ +G+ +K + + G P +IYHV VMPC+
Sbjct: 122 SACPGWICYAEKTHGEYILPYISTTRSPQQMMGSLVKSYFAGQQGLSPQQIYHVAVMPCF 181
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
DKKLEA+R DF E EVD V+T+GEVL +++ + V+ LE +
Sbjct: 182 DKKLEASRSDFYLT-----------NAETREVDCVITSGEVLKMLEEENVSLNDLESAAP 230
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
D M ++ + L SGGY VF +AAK LFG+ ++ +L +KT+RN DF+EV+LE
Sbjct: 231 DTMFSSFCGDEFLSHAGSGSGGYLHHVFTYAAKHLFGEEVK-NLTYKTLRNKDFQEVSLE 289
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+G LL FA YGF+N+QN+V+K+K K Y FVEVMACPSGCLNGGGQ+KP GQ+ K
Sbjct: 290 KDGVVLLCFASAYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGCLNGGGQVKPSTGQNQK 349
Query: 413 ELIKTLETIY-LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 471
EL++ +E +Y E +L P + V LY WL G E+AK+ +HT+YH V K
Sbjct: 350 ELLQKVEDLYKAERPLL--PEDDARVAELYQSWLNSVGDERAKELLHTQYHTVEKMTNGL 407
Query: 472 LHNW 475
W
Sbjct: 408 TMKW 411
>gi|348686504|gb|EGZ26319.1| hypothetical protein PHYSODRAFT_258585 [Phytophthora sojae]
Length = 521
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 216/518 (41%), Positives = 302/518 (58%), Gaps = 75/518 (14%)
Query: 11 IGDLSDFIAPSQNCVVSLKKATFKNPD--------------KPQVSTSSKQQAEPVK--- 53
+GDL+D+I PSQ CV L + PD + ++S + +PVK
Sbjct: 6 LGDLNDYIQPSQACVNPLFTSDSVQPDAAGAQPNGLAKITLQTELSAADLAVPQPVKPNI 65
Query: 54 ----------ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSR 101
ISL DCLACSGC+TSAETV++ +QS E L + K K V+++LSPQSR
Sbjct: 66 IRTTTQEKATISLDDCLACSGCVTSAETVLISQQSFKEMLDVLAAKKHKHVVVTLSPQSR 125
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
ASLA HF + + V +KL T ++LGV + D++CS D L+E+ EF+ RY Q++
Sbjct: 126 ASLAAHFEMPVVVVHRKLVTLFRNLGVNLVIDSTCSGDFALLESRAEFLHRYHNQQKTVW 185
Query: 162 ERSNSS--------------------------LPMLSSACPGWICYAEKQLGSYILPYIS 195
R SS +PML+S+CPGWICYAEK + I P+I
Sbjct: 186 ARPPSSVAVSSAKTEYLEPSTSANPLQDPLRAMPMLASSCPGWICYAEKSQPNAI-PFID 244
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 255
+ KSPQQ G+ IK + + G P E+YHV VMPC+DKKLEA+R+DF E+ +
Sbjct: 245 TTKSPQQIAGSIIKRFVSGEHGVAPSEVYHVAVMPCFDKKLEASRKDF----QDPEDATK 300
Query: 256 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE---SPLDKMLTNVDDEGHLY---GVA 309
D VD VL T E+++LI+ V+F +LE +P + ML+ + ++G + V
Sbjct: 301 D-------VDCVLATTEIIELIESLNVDFASLEPANLTPEEVMLSGISEDGSVVLGSNVN 353
Query: 310 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQN 369
SSGG+ E +FR AAK LF + G LE+ RN DFREV+L +EGK +LKFA+ YGF+N
Sbjct: 354 ASSGGHLEHIFRFAAKELFNVEVTGPLEYVAGRNPDFREVSLVIEGKEVLKFAVAYGFRN 413
Query: 370 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 429
+Q+I+ K++ KC Y +VE+MACPSGCLNGGGQIKPK EL+ + T E + +
Sbjct: 414 IQSIMTKIRRNKCPYHYVEIMACPSGCLNGGGQIKPKSTLLASELLDNV-TSRFEELQVR 472
Query: 430 DPFKNPLVRSLYDEWLEQ-PGSEKAKKHVHTEYHPVVK 466
DP NP V +Y+++L P S+ A+ +HT+YH V K
Sbjct: 473 DPTANPAVNYVYEKYLGGVPFSDAARAVLHTQYHAVPK 510
>gi|426254961|ref|XP_004021138.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor NARFL [Ovis aries]
Length = 491
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/434 (46%), Positives = 276/434 (63%), Gaps = 27/434 (6%)
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQSR 101
E KISL DCLACSGC+TSAETV++ +QS +E + K V+IS+SPQSR
Sbjct: 77 EKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSPQSR 136
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
ASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF+ R++ +
Sbjct: 137 ASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQREFVRRFRGQANPEQ 196
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
+LP+L+SACPGWICYAEK G+ +LP+IS+ +SPQQ +G+ +K Q+ PD
Sbjct: 197 -----ALPVLTSACPGWICYAEKTHGNTLLPHISTARSPQQVMGSLVKDFFAQQQRLTPD 251
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
++YHVTVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++ +
Sbjct: 252 KVYHVTVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVFKLLEEEG 300
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
V+ LE +PLD + ++ + G SGGY E VFRHAA+ LFG + + ++ +
Sbjct: 301 VSLSELEPAPLDSLCSSASAQEPTSXGGGGSGGYLEHVFRHAAQELFGIHVT-EVTYRPL 359
Query: 342 RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEVMACP+GCLNGGG
Sbjct: 360 RNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLNGGG 419
Query: 402 QIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q+K P KEL++ +E +Y V P P V+ LY+ WL+ GSE+A + +HT Y
Sbjct: 420 QLK-APDTPGKELLQQVERLY-GLVRTEAPEDAPGVQELYERWLQGAGSERAGRLLHTSY 477
Query: 462 HPVVKSITAQLHNW 475
H V K+ + W
Sbjct: 478 HAVEKAGSGLSIRW 491
>gi|307191772|gb|EFN75214.1| Nuclear prelamin A recognition factor-like protein [Harpegnathos
saltator]
Length = 484
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/501 (41%), Positives = 306/501 (61%), Gaps = 43/501 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSKQQA--------- 49
M+ +FS L+I +L DFI PSQ C+ + +K + + K ++ + + A
Sbjct: 1 MASRFSGALQITNLDDFITPSQECIKPIEMKPSGSRTGSKIKIQSDNAYSAINEIQQPEK 60
Query: 50 -EPVKISLKDCLACSGCITSAETVMLEKQSLDEFL---------SNINK--GKAVIISLS 97
+ V+I+L DCLACSGCITSAE+V++ +QS +E L NI K +++SLS
Sbjct: 61 LQKVEITLADCLACSGCITSAESVLVTQQSREELLRVFQEKVAQQNIENTDSKYIVVSLS 120
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
Q SLA+ + ++P Q ++L F LG S+ D + + D L+EA EFI RYK S+
Sbjct: 121 VQPILSLAQRYELTPEQALRRLAGFFYQLGADSVLDMTMADDFALLEAAKEFIERYKASK 180
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
E + + LPMLSS+CPGW+CYAEK G++ILP+IS KSPQQ +G+ +K+ + + +G
Sbjct: 181 EG----AKNQLPMLSSSCPGWVCYAEKTHGNFILPHISITKSPQQIMGSLVKYRLAEIMG 236
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
++IYHVTVMPCYDKKLEA+REDF Q Q+ET RD VD V+T+ E+ ++
Sbjct: 237 LSSEQIYHVTVMPCYDKKLEASREDFYNQ---QKET-RD-------VDCVITSIELEQML 285
Query: 278 QLKAVNFEALEESPLDKMLTNVDDE--GHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEG 334
+ +E +++ + +E L+G GS SGGYA+ +FR+AAK LF +
Sbjct: 286 NEYDLMLSEADEGEIEQPFGSYSEEIDNKLWGHRGSGSGGYADFIFRYAAKHLFDEE-NV 344
Query: 335 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 394
++FKT+RN DF+E L+ + LLKFA+ GF+N+QNIV+K+K KC Y +VE+MACP
Sbjct: 345 TVDFKTLRNPDFQEAELKKNNEVLLKFAIINGFRNIQNIVQKMKRGKCAYDYVEIMACPC 404
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GCLNGG QI+P+ P+EL TLE +Y + ++P +N + ++LY WL ++K
Sbjct: 405 GCLNGGAQIRPEGNVQPRELALTLENMY-HKLPTSNPEENKVAQNLYKTWLGGEHTDKVG 463
Query: 455 KHVHTEYHPVVKSITAQLHNW 475
+ T+YH + K TA W
Sbjct: 464 AYFSTQYHEIQKMNTALAIKW 484
>gi|157131925|ref|XP_001655974.1| nitrate, fromate, iron dehydrogenase [Aedes aegypti]
gi|122067377|sp|Q16ML2.1|NARF_AEDAE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
AAEL012261
gi|108871353|gb|EAT35578.1| AAEL012261-PA [Aedes aegypti]
Length = 478
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/498 (39%), Positives = 305/498 (61%), Gaps = 48/498 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-----------QVSTSSKQQAEPV 52
+FS L++ DL DFI PSQ C+ +K T K+ Q ++S Q+ E V
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVKIETNKSKTGSKITIQDDGSYMQATSSGLQKLEKV 62
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQS 100
+I+L DCLACSGCITSAE V++ +QS +E L +N+ + ++ +++ Q
Sbjct: 63 EITLADCLACSGCITSAEGVLITQQSQEELLKVMNENNLAKLNNQLDSVRYIVFTVAQQP 122
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA+ + + P + F+++ + K LG + DT + DL+LIE+ NEF+ R+ +++S
Sbjct: 123 ILSLAKRYNLGPEETFERVAGYFKKLGADMVVDTKIADDLSLIESRNEFVERFNTNRQS- 181
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+PM++S+CPGW+CYAEK G++ILP+I++ +SPQQ +G +K ++ + LG
Sbjct: 182 -------MPMMASSCPGWVCYAEKTHGNFILPFIATTRSPQQIMGVLVKKYLAKILGVPG 234
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D IYHVTVMPCYDKKLEA+REDF +D+ RD VD V+T+ E+ ++
Sbjct: 235 DRIYHVTVMPCYDKKLEASREDFFSDVDN----CRD-------VDCVITSIEIEQMLDGT 283
Query: 281 AVNF-EALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ F + +E SP+D ++ S SGGY+E +F++AA+ LF I+ EF
Sbjct: 284 GIQFLQTVEPSPIDWPWPTPRPSAFVWAHESSGSGGYSEYIFKYAARKLFNINID-QAEF 342
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RN+D RE LE+ G+ LL+FA+ GF+N+QN+V+K+K KC+Y F+E+MACPSGCLN
Sbjct: 343 KILRNNDLREAILEINGEVLLRFAIANGFRNIQNMVQKLKRGKCNYHFIEIMACPSGCLN 402
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG-SEKAKKHV 457
GG Q++P GQ+P+EL LE +Y + + ++P +N V +Y +L+ G + K K+ +
Sbjct: 403 GGAQVRPNSGQTPRELTAELEAMY-KMLPQSNP-ENEAVEMVYTTFLDNAGDNNKRKEFL 460
Query: 458 HTEYHPVVKSITAQLHNW 475
HT YH + K TA W
Sbjct: 461 HTSYHQIEKMNTALNIKW 478
>gi|189240985|ref|XP_001808932.1| PREDICTED: similar to nitrate, fromate, iron dehydrogenase
[Tribolium castaneum]
gi|270012992|gb|EFA09440.1| hypothetical protein TcasGA2_TC010652 [Tribolium castaneum]
Length = 484
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/500 (43%), Positives = 303/500 (60%), Gaps = 46/500 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKP---------QVST-SSKQQAEP 51
+FS L++ DL DFI PSQ C+ V ++K+ K QV T + Q+ +
Sbjct: 3 RFSGVLQLTDLDDFITPSQECIKPVQIEKSKSSTGAKITIQDDGSYLQVETDGTTQKLQK 62
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-------NKGKA-----VIISLSPQ 99
V+ISL DCLACSGCITSAE+V++ +QS +E L N GK+ +++SLS Q
Sbjct: 63 VEISLSDCLACSGCITSAESVLVTQQSQEEILRVFEENTALKNAGKSQEAKLIVVSLSIQ 122
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
S+A + + KL T+ K LG + D + + D L+E+ EF+ R++ + ES
Sbjct: 123 PILSIASRYSLPVNDCAAKLVTYFKKLGADMVIDMTVADDFALLESQREFVRRFRAT-ES 181
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
D ++ +PML+S+CPGW+CYAEK GSYILPYIS+ KSPQQ +G+ IKH + LG R
Sbjct: 182 DGVKN--VMPMLASSCPGWVCYAEKTHGSYILPYISTTKSPQQIMGSLIKHWVGHNLGGR 239
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
IYHVT+MPCYDKKLEAAREDF +E RD VD V+T E+ +++
Sbjct: 240 S--IYHVTLMPCYDKKLEAAREDFF----DKETQSRD-------VDCVITAIELQQMLEK 286
Query: 280 KAVNFEALEESPLDK---MLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGH 335
E LE+S + + + D +L GS SGGYA+ +F++AAK LFG +E +
Sbjct: 287 DGCVLENLEKSQFSQPWLLKQDTDVCPNLTRHLGSGSGGYADHIFKYAAKELFGIEVE-N 345
Query: 336 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
LE+ +RN DFREV LE EGK LL+FA+ GF+N+QN+V+K+K K Y +VE+MACPSG
Sbjct: 346 LEYHNLRNPDFREVVLEKEGKVLLRFAIANGFRNIQNLVQKLKRGKSQYHYVEIMACPSG 405
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKK 455
CLNGG QI+PK G + KEL LE +Y ++ + P +N V+ LY+ WL S+K
Sbjct: 406 CLNGGAQIRPKDGTALKELTTELENLY-SSLPVIKPEENKTVKELYEGWLGGMESDKCTA 464
Query: 456 HVHTEYHPVVKSITAQLHNW 475
+HT+YH V K+ A W
Sbjct: 465 ILHTQYHAVEKTTNALNIKW 484
>gi|307190233|gb|EFN74344.1| Nuclear prelamin A recognition factor-like protein [Camponotus
floridanus]
Length = 482
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/501 (40%), Positives = 302/501 (60%), Gaps = 45/501 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA----------E 50
M+ +FS L+I +L DFI PSQ C+ ++ + K+ ++ S A +
Sbjct: 1 MASRFSGALQITNLDDFITPSQECIKPIEMQSSKSKTGAKIKIQSDNLAINEIRQSEKLQ 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFL-------SNINKG----KAVIISLSPQ 99
V+I+L DCLACSGCITSAE+V++ +QS +E L + N G K +++SLS Q
Sbjct: 61 KVEITLADCLACSGCITSAESVLVTQQSQEELLRVFQDKLAQQNTGSTNIKYIVVSLSVQ 120
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
SLA+H+ ++P Q KL F LG ++ D + + D L+EA EF+ RYK ++E
Sbjct: 121 PVLSLAQHYELTPEQTLSKLAGFFYKLGADAVLDMTVADDFVLLEAAKEFVERYKANKEG 180
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
+ LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ + +G
Sbjct: 181 ----IKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLAENMGLS 236
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
P++IYHVTVMPCYDKKLEA+REDF +Q++ RD VD V+T+ E+ ++
Sbjct: 237 PEQIYHVTVMPCYDKKLEASREDFY----NQQKGTRD-------VDCVITSIELEQMLNE 285
Query: 280 KAVNFEALEESPLDKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK--VIEG 334
+ ++E + + N ++E L+ SGGYA+ +FR+AAK LF + V+
Sbjct: 286 DGLVLNEIDEGEIKQPFGSYNKENENRLWGHSGSGSGGYADFIFRYAAKNLFDEENVV-- 343
Query: 335 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 394
+ FK +RN DF+E L+ + LLKFA+ GF+N+QNIV+KVK KC Y +VE+MACP
Sbjct: 344 -INFKNLRNPDFQEAELKRNDQVLLKFAIINGFRNIQNIVQKVKRSKCVYDYVEIMACPC 402
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GCLNGG QI+P+ P+EL LE +Y + + P +N +V++LY WL ++K
Sbjct: 403 GCLNGGAQIRPEGNVQPRELASILENVY-HKLPSSRPEENKVVQNLYKTWLGGEHTDKVS 461
Query: 455 KHVHTEYHPVVKSITAQLHNW 475
+ T+YH + K TA W
Sbjct: 462 AYFSTQYHEIQKMNTALAIKW 482
>gi|332020976|gb|EGI61369.1| Putative cytosolic Fe-S cluster assembly factor [Acromyrmex
echinatior]
Length = 484
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/501 (40%), Positives = 302/501 (60%), Gaps = 43/501 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK------------QQ 48
M+ +FS L+I +L DFI PSQ C+ ++ K+ ++ S ++
Sbjct: 1 MASRFSGALQITNLDDFITPSQECIKPIEMQANKSKTGAKIKIQSDNAFSALNEIGQPEK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL-------SNINKG----KAVIISLS 97
+ V+I+L DCLACSGCITSAE+V++ +QS +E L + N G K +I+SLS
Sbjct: 61 LQKVEITLADCLACSGCITSAESVLVTQQSREELLKVFQEKIAQQNVGSTDSKYIIVSLS 120
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
Q SLA+H+ ++P Q KL + LG ++ D + + D L+EA EF+ RYK S+
Sbjct: 121 VQPVLSLAQHYELTPEQTLHKLAGYFYQLGADAVLDMTVADDFVLLEAAKEFVERYKASK 180
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
E + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ + +
Sbjct: 181 EG----TKNQLPMLSSSCPGWVCYAEKTHGNFILPYISITKSPQQIMGSLVKYHLAEVMN 236
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P+ IYHVTVMPCYDKKLEA+REDF +Q+ RD VD V+T+ E+ ++
Sbjct: 237 LSPEHIYHVTVMPCYDKKLEASREDFY----NQQRKTRD-------VDCVITSIELEQML 285
Query: 278 QLKAVNFEALEESPLDKMLTNVDDE--GHLY-GVAGSSGGYAETVFRHAAKTLFGKVIEG 334
+ ++E + + + ++E L+ SGGYA+ +FR+AAK LF +
Sbjct: 286 SEDGLVLNEIDEGEIKQPFGSYNEEIGNKLWGHSGSGSGGYADFIFRYAAKNLFDE-DNV 344
Query: 335 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 394
++FK +RN DF+E L+ + LLKFA+ GF+N+QNIV+K+K KC Y +VE+MACP
Sbjct: 345 TVDFKNLRNPDFQEAELKRNNQVLLKFAIINGFRNIQNIVQKMKRGKCVYDYVEIMACPC 404
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GCLNGG QI+P P+EL TLE +Y + L+ P +N +V++LY WL ++K
Sbjct: 405 GCLNGGAQIRPDGNVQPRELALTLENMY-HKLPLSKPEENKVVQNLYKTWLGGEHTDKVN 463
Query: 455 KHVHTEYHPVVKSITAQLHNW 475
H +T+YH + K+ TA W
Sbjct: 464 AHFNTQYHEIQKTNTALAIKW 484
>gi|340369769|ref|XP_003383420.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Amphimedon queenslandica]
Length = 486
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/503 (40%), Positives = 301/503 (59%), Gaps = 50/503 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVS--------------TSSKQQA 49
KFS L++ DL DFI PSQ C+ +K N K + T ++++
Sbjct: 3 KFSGALKLTDLDDFITPSQECIKPVKVDRVANATKGSSAIKIENDGSYIEIDKTGAQKKL 62
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSR-------- 101
E I+L DCLACSGCITSAE+V++ +QS +E + + K V + +
Sbjct: 63 EKAVITLNDCLACSGCITSAESVLIAEQSQEELYKILEENKKVKEKEGGKEKLVVVSVSP 122
Query: 102 ---ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
ASLA +F + ++ KL +FLK LGV +FD + SRD++LIE+ EF+ R++ S
Sbjct: 123 QSVASLAVNFKKTMEEMSSKLVSFLKQLGVDFVFDITFSRDISLIESAQEFVRRFQGSSN 182
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S+PML+SACPGW+CYAEK G +ILPYIS+ KSPQQ +G+ +K H+ +
Sbjct: 183 P------GSIPMLASACPGWVCYAEKTHGDFILPYISTTKSPQQIMGSLVKDHLAKAHRK 236
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD++YHVT+MPCYDKKLEA+REDF L S +VD V+TTGEV ++
Sbjct: 237 MPDQVYHVTIMPCYDKKLEASREDFYHDLYSTR-----------DVDCVITTGEVEIMLN 285
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
V+ ++L +P+D+ + D + + SGGY +F++A K LFG+ ++ +E+
Sbjct: 286 EHEVDIDSLPLTPMDEPFCSYDKDQLVSHEGSGSGGYLNYIFKYACKELFGETVDS-IEY 344
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RN DF E +L+V+GK +LKFA YGF+N+QN+V+K+K ++C Y ++EVMACPSGCLN
Sbjct: 345 KVLRNKDFYECSLQVDGKEVLKFAAAYGFRNIQNVVQKLKRKRCGYHYIEVMACPSGCLN 404
Query: 399 GGGQIKPKPGQS------PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEK 452
GGGQIK + + KE ++ ++ Y +++ P +NP + +Y EWLE S+K
Sbjct: 405 GGGQIKNEEDKGSASQLLSKENLQNVDAAY-KSLRPRKPTENPKLDLIYKEWLEDSNSDK 463
Query: 453 AKKHVHTEYHPVVKSITAQLHNW 475
+ +HT+YH + K +A W
Sbjct: 464 VQSMLHTKYHAIEKFTSALTIKW 486
>gi|350409304|ref|XP_003488687.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Bombus impatiens]
Length = 486
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/508 (39%), Positives = 304/508 (59%), Gaps = 55/508 (10%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVS----------TSSKQQ 48
M+ +FS L+I +L DFI PSQ C+ + ++K+ K K ++ ++
Sbjct: 1 MTSRFSGALQITNLDDFITPSQECIKPIEIQKSKSKTGAKIKIEEDGTPFALNEAGQSEK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN-------------KGKAVIIS 95
+ V+I+L DCLACSGCITSAE+V++ +QS +E + + +++S
Sbjct: 61 LQKVEITLADCLACSGCITSAESVLVTQQSQEELMRVFKEKVSRRHQSKDDARSTFIVVS 120
Query: 96 LSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQ 155
LS Q+ S+A+H+ ++P Q KL + LG + D + + D L+E+ EFI RYK
Sbjct: 121 LSVQAVLSIAKHYSLNPEQALNKLAGYFYQLGADIVLDMTVADDFALLESAKEFIERYKA 180
Query: 156 SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
++E + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ +
Sbjct: 181 AKEG----AKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLAET 236
Query: 216 LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLD 275
+ P+++YHVTVMPCYDKKLEA+REDF + E +RD VD V+T E+
Sbjct: 237 MDLLPEQVYHVTVMPCYDKKLEASREDFY----NYERKFRD-------VDCVITPIEIEQ 285
Query: 276 LI--------QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 327
++ +++ E L ES ++ TN+ L SGGYAE + +AAK L
Sbjct: 286 MLSEYNVSINEIREREVEKLFESQMEYFKTNL-----LGHSGSGSGGYAEFILHYAAKHL 340
Query: 328 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 387
F + + +EFK +RN DF+E + +G TLL FA+ GF+N+QN+V+K+K KC Y +V
Sbjct: 341 FDET-DITVEFKNLRNPDFQEAVFQKDGCTLLTFAIANGFRNIQNLVQKLKRGKCSYDYV 399
Query: 388 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 447
EVMACP GCLNGG QI+P P+EL LE+IY E + ++P +N +V++LY +WL
Sbjct: 400 EVMACPCGCLNGGAQIRPSSNIQPRELALQLESIYRE-LPRSNPEQNTVVQNLYRDWLGG 458
Query: 448 PGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++KA + HT+YH + KS TA W
Sbjct: 459 ECTDKALSYFHTQYHEIKKSDTALAIKW 486
>gi|196015869|ref|XP_002117790.1| hypothetical protein TRIADDRAFT_61804 [Trichoplax adhaerens]
gi|190579675|gb|EDV19766.1| hypothetical protein TRIADDRAFT_61804 [Trichoplax adhaerens]
Length = 447
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/485 (43%), Positives = 287/485 (59%), Gaps = 54/485 (11%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSG 64
FS L+I D+ DFI PSQ C+ K DK + + + Q+E VKISL DCLACSG
Sbjct: 3 FSSVLKIADVDDFINPSQECI----KPITSKLDKHE-KYNHRSQSEKVKISLNDCLACSG 57
Query: 65 CITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSRASLAEHFGISP 112
CITSAE+V++ KQS +EF + ++K K +I+S+SPQSRA+LA ++ +
Sbjct: 58 CITSAESVLISKQSKEEFYAILDKNQRLQETHQESRMKTIIVSISPQSRAALAVNYNLDI 117
Query: 113 LQVFKKLT-TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
Q+ K L TF K LG +FD + +RD +LIE+ EFI RY S S LP+
Sbjct: 118 NQIGKMLAATFKKVLGASYVFDATFARDFSLIESQREFIDRYCSS-------SPCKLPVF 170
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+SACPGWICYAEK G +ILPY+S+VKSPQQ +G+ IK + ++G RP +IYHVTVMPC
Sbjct: 171 ASACPGWICYAEKIHGKFILPYLSAVKSPQQIMGSLIKDYFANQIGKRPSDIYHVTVMPC 230
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
YDKKLEA+R DF +E L +VD VLT+GEV+++ +
Sbjct: 231 YDKKLEASRNDFY-----------NESLNAADVDCVLTSGEVMEIFNERGCVVVNGTSEN 279
Query: 292 LDKMLTNVDDEGH-LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
LD+ +VD+ L G SGGY E VF+ AA +F I+ + +KT+RN DFREV
Sbjct: 280 LDRPFVSVDENNEVLTHDGGGSGGYLENVFKTAAAEIFQLKIQNMI-YKTVRNKDFREVI 338
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
L ++GK++LK A+ YGF+N+QNIV+++K KC Y +VE+MACP GCLNGGGQ K +
Sbjct: 339 LTIDGKSVLKGAIVYGFRNIQNIVQRMKRGKCLYDYVEIMACPGGCLNGGGQPKIDLDSN 398
Query: 411 PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITA 470
+ + LE Y + EWL+ S KA+K ++T Y+ +S A
Sbjct: 399 LRLHLMKLEKCY----------------NSAGEWLDGSDSYKARKMLYTTYYDKSQSQNA 442
Query: 471 QLHNW 475
W
Sbjct: 443 ISVKW 447
>gi|259511473|sp|B0WU52.2|NARF_CULQU RecName: Full=Probable cytosolic Fe-S cluster assembly factor
CPIJ010948
Length = 478
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/498 (40%), Positives = 303/498 (60%), Gaps = 48/498 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLK----------KATFKNPDK-PQVSTSSKQQAEPV 52
+FS L++ DL DFI PSQ C+ +K K T ++ Q ++S Q+ E V
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVKIEANKSKTGSKITIQDDGSYMQATSSGLQKLEKV 62
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQS 100
+I+L DCLACSGCITSAE V++ +QS +E L +N+ + ++ +++ Q
Sbjct: 63 EITLADCLACSGCITSAEGVLITQQSQEELLKVMNENNLAKLNNQLDAVRFIVFTVAQQP 122
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA+ + + + F+++ + + LG + DT + DL LIE NEFI R+ ++++
Sbjct: 123 ILSLAKRYNLPAEETFERVAGYFRKLGADLVVDTKIADDLALIEGRNEFIERFNTNRQT- 181
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
LPML+S+CPG++CYAEK GS+ILPYI+S +SPQQ +G +K ++ + LG
Sbjct: 182 -------LPMLASSCPGFVCYAEKTHGSFILPYIASTRSPQQIMGVLVKKYLAKLLGIAA 234
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D IYHVTVMPCYDKKLEA+REDF S E RD VD V+T+ E+ ++
Sbjct: 235 DRIYHVTVMPCYDKKLEASREDFF----SDVENCRD-------VDCVITSIEIEQMLDGS 283
Query: 281 AVN-FEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEF 338
V + +E++P+D + ++G S SGGY+E +F++AA+ LF ++ H+EF
Sbjct: 284 GVQALQIVEKAPIDWPWSTGRPPVFVWGHESSGSGGYSEYLFKYAARKLFNVAVD-HVEF 342
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RNSD RE LE G+ +L+FA+ GF+N+QN+V+K+K KC+Y ++E+MACPSGCLN
Sbjct: 343 KNLRNSDLREAVLEQNGEVVLRFAIANGFRNIQNMVQKLKRGKCNYHYIEIMACPSGCLN 402
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH-V 457
GG QI+P GQS +EL LE +Y ++ ++P +N V +Y +L+ G +K +
Sbjct: 403 GGAQIRPTGGQSQRELTAELEALY-RSLPASNP-ENEAVEMVYTTFLDNAGDNNMRKEFL 460
Query: 458 HTEYHPVVKSITAQLHNW 475
HT YHP+ K TA W
Sbjct: 461 HTSYHPIEKMNTALNIKW 478
>gi|242017847|ref|XP_002429397.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514316|gb|EEB16659.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 473
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 213/495 (43%), Positives = 298/495 (60%), Gaps = 42/495 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSK---------QQA 49
M+ +FS L++ DL DFI PSQ C+ V +KK K ++ Q+
Sbjct: 1 MASRFSGALQLTDLDDFITPSQECIKPVEIKKNPTSTGSKIKIQDDGYYEENNFGQVQKL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFL------SNINKG---KAVIISLSPQS 100
+ V+I+L DCLACSGCITSAE V++ +Q+ E L +N K K V+ISLS Q
Sbjct: 61 QKVQITLNDCLACSGCITSAEGVLINQQNFTEVLKFLDDNNNFKKNGTSKIVVISLSIQP 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SL+E + ++P +V L T KSLG + + S + DL L+E+ EF+ RY+ S
Sbjct: 121 ILSLSEKYSMNPEKVAGCLVTLFKSLGADKVVEMSLAEDLALMESQFEFVERYRNS---- 176
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+++ +PMLSS+CPGWICYAEK GS+ILPYIS+ KSPQQ IG+ IK++ LG+ P
Sbjct: 177 -DKNLKKMPMLSSSCPGWICYAEKSHGSFILPYISTTKSPQQIIGSLIKYN----LGYSP 231
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
+++YHVT+MPCYDKKLEA+R +F +SQ L + +VD VLTT E+ L+ +
Sbjct: 232 EQVYHVTLMPCYDKKLEASRNEF---FNSQ--------LNVKDVDCVLTTIELEQLLSER 280
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ F L+ LD D+ SGGYAE V +AA+ LFG +E +L +K
Sbjct: 281 NILFSTLQPGTLDYPWGQPSDKLLRGHSGSGSGGYAENVITYAAQELFGIRLE-NLNWKV 339
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DF EV +E E K +L FA+ GF+N+QNIV+K+K KC Y ++E+MACPSGCLNGG
Sbjct: 340 VRNPDFTEVTVEHESKQVLNFAIANGFRNIQNIVQKIKRNKCPYHYIEIMACPSGCLNGG 399
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
QI+P KE I LE +Y +N+ + P KN ++ LY +WL+ GS+K+ +HT
Sbjct: 400 AQIRPDSSIHTKEFINKLENLY-KNLPIVSPEKNLQLQQLYTKWLDGIGSDKSVALLHTT 458
Query: 461 YHPVVKSITAQLHNW 475
Y V K+ A W
Sbjct: 459 YREVEKTQLALNIKW 473
>gi|340713495|ref|XP_003395278.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Bombus terrestris]
Length = 486
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 204/508 (40%), Positives = 304/508 (59%), Gaps = 55/508 (10%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVS----------TSSKQQ 48
M+ +FS L+I +L DFI PSQ C+ + ++K+ K K ++ ++
Sbjct: 1 MTSRFSGALQITNLDDFITPSQECIKPIEIQKSKSKTGAKIKIEEDGTPFALNEAGQTEK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL-------SNINKGKA------VIIS 95
+ V+I+L DCLACSGCITSAE+V++ +QS +E + S ++ K +++S
Sbjct: 61 LQKVEITLADCLACSGCITSAESVLVTQQSQEELMRVFKEKVSQHHQSKDDALSTFIVVS 120
Query: 96 LSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQ 155
LS Q+ S+A+H+ ++P Q KL + LG + D + + D L+E+ EFI RYK
Sbjct: 121 LSVQAVLSIAKHYSLNPEQALNKLAGYFHQLGADIVLDMTVADDFALLESAKEFIERYKA 180
Query: 156 SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
+++ + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ +
Sbjct: 181 AKKG----AKGQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLAET 236
Query: 216 LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLD 275
+G P+++YHVTVMPCYDKKLEA+REDF + E +RD VD V+T E+
Sbjct: 237 MGLLPEQVYHVTVMPCYDKKLEASREDFY----NYERKFRD-------VDCVITPIEIKQ 285
Query: 276 LI--------QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 327
++ +++ E L ES ++ TN+ L SGGYAE + +AAK L
Sbjct: 286 MLSEYNVPINEIREREVEKLFESQMENFKTNL-----LGHSGSGSGGYAEFILHYAAKHL 340
Query: 328 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 387
F + + +EFK +RN DF+E + +G TLL FA+ GF+N+QN+V+K+K KC Y +V
Sbjct: 341 FDET-DITVEFKNLRNPDFQEAVFQKDGHTLLTFAIANGFRNIQNLVQKLKRGKCSYDYV 399
Query: 388 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 447
EVMACP GCLNGG QI+P P+EL LE+IY E + ++P +N V++LY WL
Sbjct: 400 EVMACPCGCLNGGAQIRPSSNIQPRELALQLESIYRE-LPRSNPEQNTAVQNLYRNWLGG 458
Query: 448 PGSEKAKKHVHTEYHPVVKSITAQLHNW 475
++KA + HT+YH + KS A W
Sbjct: 459 ECTDKALSYFHTQYHEIKKSDIALAIKW 486
>gi|326515148|dbj|BAK03487.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 256
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 177/258 (68%), Positives = 222/258 (86%), Gaps = 10/258 (3%)
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
RP ++YHVTVMPCYDKKLEA R DFVF ++ +E T EVDSVLTTGEVLDLIQ
Sbjct: 8 RPYDVYHVTVMPCYDKKLEAVRGDFVFSVEEKEVT---------EVDSVLTTGEVLDLIQ 58
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
K+V+F+ +EESPLD++LTNVDD+GHLYGV+G SGGYAET+FR+AA+ LF + IEG L+F
Sbjct: 59 SKSVDFKTMEESPLDRLLTNVDDDGHLYGVSGGSGGYAETIFRYAARALFNREIEGPLDF 118
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RNSDFREV LEVEG+ +LKFALCYGF+NLQNIVRKVKM KC+YQF+EVMACPSGCLN
Sbjct: 119 KILRNSDFREVTLEVEGRPVLKFALCYGFRNLQNIVRKVKMGKCEYQFIEVMACPSGCLN 178
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENV-MLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GGGQIKP GQSPK+LIK LE +Y+++V ++++PF NP+ ++LYD+WL +PGS+ AK+++
Sbjct: 179 GGGQIKPAKGQSPKDLIKLLEDVYMQDVSIISNPFDNPIAKTLYDDWLVEPGSDNAKRYL 238
Query: 458 HTEYHPVVKSITAQLHNW 475
HT+YHPVVKS+T+QL NW
Sbjct: 239 HTQYHPVVKSVTSQLQNW 256
>gi|322797338|gb|EFZ19450.1| hypothetical protein SINV_01960 [Solenopsis invicta]
Length = 484
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/501 (40%), Positives = 300/501 (59%), Gaps = 43/501 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK------------QQ 48
M+ +FS L+I +L DFI PSQ C+ ++ K+ ++ S Q+
Sbjct: 1 MASRFSGALQITNLDDFITPSQECIKPIEMQANKSITGAKIKIQSDNAHLALNEIEQPQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL---------SNINK--GKAVIISLS 97
+ V+I+L DCLACSGCITSAE+V++ +QS +E L NI K +I+SLS
Sbjct: 61 LQKVEITLTDCLACSGCITSAESVLVTQQSREELLRVFQEKVAQQNIGSTDSKYIIVSLS 120
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
Q SLA+ + ++P Q KL F LG ++ D + + D L+EA EF+ RYK S+
Sbjct: 121 VQPVLSLAQRYELTPEQALSKLAGFFYRLGADAVLDMTMADDFVLLEAAKEFVERYKASK 180
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
E + LPMLSS+CPGW+CYAEK G++ILP+IS KSPQQ +G+ +K+H+ + +G
Sbjct: 181 EG----MKNQLPMLSSSCPGWVCYAEKTHGNFILPHISVTKSPQQIMGSLVKYHLAEIIG 236
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P++IYHVTVMPCYDKKLEA+REDF +Q+ RD VD V+T+ E+ ++
Sbjct: 237 LSPEQIYHVTVMPCYDKKLEASREDFY----NQQRKMRD-------VDCVITSIELEQML 285
Query: 278 QLKAVNFEALEESPLDKMLTNVDDE--GHLY-GVAGSSGGYAETVFRHAAKTLFGKVIEG 334
+ ++E + + + +E L+ SGGYA+ +FR+AAK LF +
Sbjct: 286 NEDGLILNEIDEGEIKQPFGSYSEEIGTKLWGHSGSGSGGYADFIFRYAAKNLFDED-NV 344
Query: 335 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 394
++FK++RN DF+E L+ + LLKFA+ GF+N+QNIV+K+K KC Y +VE+MACP
Sbjct: 345 TVDFKSLRNLDFQEAELKRNDQVLLKFAIINGFRNIQNIVQKMKKGKCVYDYVEIMACPC 404
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GCLNGG Q++P +EL TLET+Y + L+ P +N +V++LY WL ++K
Sbjct: 405 GCLNGGAQVRPDGNIQARELASTLETMY-RKLPLSKPEENTVVQNLYKTWLGGEHTDKVN 463
Query: 455 KHVHTEYHPVVKSITAQLHNW 475
+ +T+YH + K TA W
Sbjct: 464 AYFNTQYHEIQKMNTALAIKW 484
>gi|145344368|ref|XP_001416706.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576932|gb|ABO94999.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 473
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 206/500 (41%), Positives = 291/500 (58%), Gaps = 57/500 (11%)
Query: 5 FSPTLRIG--DLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEP----------- 51
FS ++I L+DFIAPSQ+CVV+L + KP+ + AEP
Sbjct: 2 FSGAVKIAPDALNDFIAPSQDCVVALDGVALRR-RKPREDDAMAVDAEPTSTFTPTMTQG 60
Query: 52 --VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA-----VIISLSPQSRASL 104
+K+SL DCLACSGC+TSAE+V+LE+QS+DEF + ++ V+ S+SPQS SL
Sbjct: 61 DALKVSLSDCLACSGCVTSAESVLLEQQSVDEFAQACARARSDGTSVVVASVSPQSLMSL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
+E +G+ + +L LK+ G FDTS SRD+ L+E EF ++ R
Sbjct: 121 SEAYGLGVEETRARLGGLLKAGFGAARAFDTSFSRDIALVETFAEF---------TEWMR 171
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ PML+SACPGW+CYAEK G +P++++ KSPQQ +G +K + ++LG +
Sbjct: 172 DGARTPMLASACPGWVCYAEKTHGELAVPHMATTKSPQQIMGRFVKSAVARELGVPAHNV 231
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
YHV+VMPCYDKKLEA R+DF E + +VD VLTTGEV L L+
Sbjct: 232 YHVSVMPCYDKKLEATRDDF-------------ESDGVKDVDVVLTTGEVALL--LEKAG 276
Query: 284 FEALEESP---LDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLE 337
L ++P D ++ + A SGGYAE VFR AA LF I G ++
Sbjct: 277 LCHLRDAPANDFDAFVSTNEQAPESVCAAPAVSGSGGYAEYVFRRAAAELFNAPITGEID 336
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
+ +RN+D RE L + G+ +L+ A+ YGF+N+QN+VR +K++K + FVE+MACPSGCL
Sbjct: 337 WVKMRNADMREATLTINGEAVLRVAVAYGFRNIQNLVRSIKLKKSKHHFVEIMACPSGCL 396
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL-EQPGSEKAKKH 456
NGGGQI + G + KELI L+ Y EN A P + V +LY EW+ PGS A++
Sbjct: 397 NGGGQIPAREGTANKELIDRLDDTYRENAR-ARPMAD--VSTLYREWIGGNPGSSNAREA 453
Query: 457 VHTEYHPVVKSI-TAQLHNW 475
+ T+YH KS+ QL++W
Sbjct: 454 LRTQYHIRAKSVGVVQLNSW 473
>gi|195476070|ref|XP_002085972.1| GE22682 [Drosophila yakuba]
gi|259511295|sp|B4ISL0.1|NARF_DROYA RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GE22682
gi|194185754|gb|EDW99365.1| GE22682 [Drosophila yakuba]
Length = 477
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 203/497 (40%), Positives = 295/497 (59%), Gaps = 47/497 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+ S L++ D+ DFI PSQ C+ V + KA K K ++ S S KQ+ V+
Sbjct: 3 RLSRALQLTDIDDFITPSQICIKPVEIDKARSKTGAKIKIKGDSCFEESESGKQKLNKVE 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSR 101
I+L+DCLACSGCITSAE V++ +QS +E L + + + ++ S++ Q
Sbjct: 63 ITLQDCLACSGCITSAEGVLITQQSQEELLRVLQENSKKKATEDWDNVRTIVFSVATQPL 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 123 LSLAHRYQIGVEDAARHLAGYFRSLGGNYVLSTKVADDIALLECRQEFVERY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N +L MLSS+CPGW+CYAEK G++ILPY+S+ +SPQQ +G +KH + +KL
Sbjct: 175 -RENENLTMLSSSCPGWVCYAEKTHGNFILPYVSTTRSPQQIMGVLVKHILAEKLNIPAS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVTVMPCYDKKLEA+R+DF S+ RD VD V+T+ EV L+
Sbjct: 234 RIYHVTVMPCYDKKLEASRDDFF----SKTNNSRD-------VDCVITSVEVEQLLGEAQ 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ LD +NV + ++ + SGGYAE VF+ AAK +F +V LEFK
Sbjct: 283 RTLSQFDPLDLDWPWSNVRPDLMVWAHEKTLSGGYAEHVFKFAAKQIFNEVPTNELEFKQ 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNG 399
++N DFRE+ L+ G T+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NG
Sbjct: 343 LKNRDFREIILKKNGNTVLKFAIANGFRNIQNMVQKLKRGKVSNYHFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G QI+P GQ +EL + LE +Y N+ L++P +N L + +Y ++L+ +EK+ + +HT
Sbjct: 403 GAQIRPTTGQHVRELTRKLEELY-HNLPLSEP-ENSLTKHIYKDFLDGFQTEKSYELLHT 460
Query: 460 EYHPVVKSITAQLH-NW 475
YH VV ++ L+ NW
Sbjct: 461 SYHDVVSELSISLNINW 477
>gi|221106794|ref|XP_002157697.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Hydra
magnipapillata]
Length = 462
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 203/492 (41%), Positives = 294/492 (59%), Gaps = 52/492 (10%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSKQQAE----------P 51
KFS L++ DL+DFI PSQ C+ V ++K K ++ S Q +
Sbjct: 3 KFSGALQLTDLNDFITPSQVCIKPVEIEKVKKKGDTTIKIEGDSYYQVDVNSGEQVRLKK 62
Query: 52 VKISLKDCLACSGCITSAETVMLEKQS-------LDEFLSNINKGKAVIISLSPQSRASL 104
I+L DCLACSGCITSAE+V++ +QS L + LS NK K V+IS+SPQS S+
Sbjct: 63 ANITLNDCLACSGCITSAESVLIAEQSCLQLEKVLADNLSLANK-KIVVISMSPQSLVSI 121
Query: 105 AEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
A F ++ + K+TTF K +G I+DT+ +R ++L+E EF+ ++K
Sbjct: 122 AVKFHVTVSDAYSKITTFFKDIGCDYIYDTNLARSISLLEMQKEFVEKFK---------- 171
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
N ML+SACPGWICYAEK G ++PYIS KSPQQ +G+ +K + +KL P+EIY
Sbjct: 172 NDKKIMLTSACPGWICYAEKTHGELLIPYISQTKSPQQIMGSIVKQLLGKKLNKTPNEIY 231
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
HVT+MPCYDKKLEA+R DF Y D +VD V+T+ EV +++Q K ++F
Sbjct: 232 HVTIMPCYDKKLEASRTDF----------YNDI-YNTRDVDLVITSSEVENMLQTKNIDF 280
Query: 285 EALEESPLDKMLTNVDDEGHLYG-VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
L S +D+ + VD++ L G SGGY E VF HA+ +LF VI + +K +RN
Sbjct: 281 CGLSLSLIDEDYSFVDEQYQLLSHRGGGSGGYLEHVFLHASHSLFN-VIPDQIIYKPLRN 339
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE++G+ L+FA YGF+N+Q+IV+K+K +KC+Y FVE+MACP GCLNGGGQ+
Sbjct: 340 KDFQEVILEIDGEVKLRFAFAYGFRNIQSIVQKIKQKKCNYDFVEIMACPLGCLNGGGQV 399
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + K LI+ + + Y + + +P + + LY++ ++ +HT+YH
Sbjct: 400 RAETVDDAKSLIQLVTSTY-DLLKPVNPLHDRKTKELYNQL--------SQSDLHTQYHA 450
Query: 464 VVKSITAQLHNW 475
V K TA W
Sbjct: 451 VKKMKTALNIQW 462
>gi|195116175|ref|XP_002002631.1| GI11683 [Drosophila mojavensis]
gi|259511280|sp|B4KFU7.1|NARF_DROMO RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GI11683
gi|193913206|gb|EDW12073.1| GI11683 [Drosophila mojavensis]
Length = 476
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 197/496 (39%), Positives = 297/496 (59%), Gaps = 46/496 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+FS L++ DL DFI PSQ C+ V++ K K K V S S KQ+ + V+
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVTIDKTKSKTGSKITVQADGYYEESESGKQKLQKVE 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFL------------SNINKGKAVIISLSPQSR 101
I+L+DCLACSGCITSAE V++ +QS +E L + +K + ++ +++ Q
Sbjct: 63 ITLQDCLACSGCITSAEGVLITQQSQEELLKVLRENERLKASGDSDKVRTIVFTIAVQPL 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA F + + + L+ +L+ LG + T + DL L+E EF+ RY
Sbjct: 123 ISLAHRFELGVEEAARHLSGYLRQLGADYVLSTKIADDLALLECRQEFVERY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N+ L MLSS+CPGW+CYAEK G++ILP+I++ +SPQQ +G +K + +KLG
Sbjct: 175 -RDNADLSMLSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGVLVKQRLAEKLGVSGS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVTVMPCYDKKLEA+REDF +++S RD VD V+T+ EV ++Q +
Sbjct: 234 RIYHVTVMPCYDKKLEASREDFYSEVNSS----RD-------VDCVITSIEVEQMLQTEE 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ S +D T+ E ++ + SGGYAE ++++AA+ LF + L+FK
Sbjct: 283 QTLQQFAPSDMDWPWTDQPPEAMVWAHESTMSGGYAEHIYKYAARELFNEETPNELQFKA 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNG 399
+RN DF E++LE +GK +LKFA+ GF+N+QN+++K+K K Y FVEVMACPSGC+NG
Sbjct: 343 LRNRDFSEISLEKDGKIVLKFAIANGFRNIQNLMQKLKRGKGPGYHFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G Q++P GQ +EL + LE +Y + + ++P N + +Y ++L+ ++K++ +HT
Sbjct: 403 GAQVRPTTGQHVRELTQQLEELY-KQLPRSNP-DNAHTKHIYTDFLDGTQTDKSQSLLHT 460
Query: 460 EYHPVVKSITAQLHNW 475
YH V K TA W
Sbjct: 461 SYHAVEKLNTALNIKW 476
>gi|444727268|gb|ELW67769.1| Cytosolic Fe-S cluster assembly factor NARFL [Tupaia chinensis]
Length = 639
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/500 (39%), Positives = 291/500 (58%), Gaps = 44/500 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV------------STSSKQQ 48
M+ FS L++ DL DFI PSQ+C+ +K ++ Q+
Sbjct: 159 MASPFSGALQLTDLDDFIGPSQDCIKPVKADRRPGSGVAKIHIQDDGSYFQVHQDGGSQK 218
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHF 108
E K+SL DCLACSGC+TSAETV++ +QS +E + + +++ SL +
Sbjct: 219 LEKAKVSLNDCLACSGCVTSAETVLIAQQSHEELRKVLRANEDGGSQKLEKAKVSLNDCL 278
Query: 109 GISPL-----------QVFKKLTTFLKS--LGVKSIFDTSCSRDLTLIEACNEFIARYKQ 155
S Q ++L L++ +G +FDT+ SR+ +L+E+ EF+ R+++
Sbjct: 279 ACSGCVTSAETVLIAQQSHEELRKVLRANEVGAHFVFDTAFSRNFSLLESQREFVRRFRE 338
Query: 156 SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
S +LP+L+SACPGWICYAEK G + P++S+ +SPQQ +G+ +K Q+
Sbjct: 339 QAGSPQ-----ALPLLASACPGWICYAEKTHGPLLTPHLSTARSPQQVMGSLVKDFFAQQ 393
Query: 216 LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLD 275
G PD++YHVTVMPCYDKKLEA+R DF + E RD VD VLTTGEV
Sbjct: 394 QGLAPDKVYHVTVMPCYDKKLEASRPDFF----NHEYQTRD-------VDCVLTTGEVYK 442
Query: 276 LIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH 335
L++ + V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG ++
Sbjct: 443 LLEEQGVSLPDLEPAPLDSLPSSVSAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVD-E 501
Query: 336 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
L ++ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K++ +C Y +VEVMACP+G
Sbjct: 502 LTYRPLRNKDFQEVTLEREGQVLLHFAAAYGFRNIQNLVQKLRRGRCPYHYVEVMACPAG 561
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKK 455
CLNGGGQ++ S +EL++ +E +Y +V + P P V LY WL+ S +A +
Sbjct: 562 CLNGGGQLRAADMPS-RELLQQVEKLY-ASVRVEAPEDTPGVPELYRHWLQGEDSARASR 619
Query: 456 HVHTEYHPVVKSITAQLHNW 475
+HT+YH V K+ + W
Sbjct: 620 LLHTQYHAVEKADSGLSIRW 639
>gi|194877439|ref|XP_001973881.1| GG21400 [Drosophila erecta]
gi|259511278|sp|B3NKH7.1|NARF_DROER RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GG21400
gi|190657068|gb|EDV54281.1| GG21400 [Drosophila erecta]
Length = 477
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 205/496 (41%), Positives = 291/496 (58%), Gaps = 47/496 (9%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVKI 54
S L++ D+ DFI PSQ C+ V + KA K K + S S K++ V+I
Sbjct: 4 LSRALQLTDIDDFITPSQMCIKPVKIDKAKSKTGAKIMIKDDSCFEESESGKKKLNKVEI 63
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFL----SNINKG--------KAVIISLSPQSRA 102
+L+DCLACSGCITSAE V++ +QS +E L N+ K + ++ +++ Q
Sbjct: 64 TLQDCLACSGCITSAEGVLITQQSQEELLRVLQENLTKKATEDWGNVRTIVFTIATQPLL 123
Query: 103 SLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 162
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 124 SLAHRYQIGVEDSARHLAGYFRSLGADYVLSTKVADDIALLECRQEFVERY--------- 174
Query: 163 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
R N +L MLSS+CPGW+CYAEK G++ILPYIS+ +SPQQ +G +KH +KL +
Sbjct: 175 RENENLTMLSSSCPGWVCYAEKTHGNFILPYISTTRSPQQIMGVLVKHVFAEKLNVPASQ 234
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
IYHVTVMPCYDKKLEA+REDF S RD VD V+T+ EV L+
Sbjct: 235 IYHVTVMPCYDKKLEASREDFF----STANNSRD-------VDCVITSVEVEQLLSESQR 283
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
+ LD +NV + ++ + SGGYAE +F+ AAK LF +V LEFK +
Sbjct: 284 TLAQYDPVDLDWPWSNVPPDFMVWAHEKTLSGGYAEHIFKFAAKELFNEVPRSELEFKQL 343
Query: 342 RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGG 400
+N DFRE+ L+ G T+LKFA+ GF+N+QN+V K+K K +Y FVEVMACPSGC+NGG
Sbjct: 344 KNRDFREIILKKNGNTVLKFAIANGFRNIQNLVHKLKRGKVSNYHFVEVMACPSGCINGG 403
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
QI+P GQ +EL + LE +Y N+ +DP +N L + +Y ++L+ +EK+ + +HT
Sbjct: 404 AQIRPTTGQHVRELTRKLEELY-HNLPQSDP-ENSLTKLIYTDFLDGFQTEKSYELLHTR 461
Query: 461 YHPVVKSITAQLH-NW 475
YH VV ++ L+ NW
Sbjct: 462 YHDVVSELSKSLNINW 477
>gi|308801913|ref|XP_003078270.1| putative polyamine oxidase (ISS) [Ostreococcus tauri]
gi|116056721|emb|CAL53010.1| putative polyamine oxidase (ISS) [Ostreococcus tauri]
Length = 2222
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 200/494 (40%), Positives = 292/494 (59%), Gaps = 67/494 (13%)
Query: 5 FSPTLRIGD--LSDFIAPSQNCVVSLKKATFKNPD---KPQVSTSSKQQA--------EP 51
FS ++I LSD+IAPSQ+CVV+L + D +V+ S++ A E
Sbjct: 1202 FSGAVKIAPDALSDYIAPSQDCVVALDGGRVRIDDLGDAGEVAVRSRRSAPETRAPTGEA 1261
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS------NINKG------KAVIISLSPQ 99
VK++L DCLACSGC+TSAE+V+LE+QS+DEFLS ++ +G +++S+SPQ
Sbjct: 1262 VKVTLSDCLACSGCVTSAESVLLEQQSVDEFLSVRKRLRSMGRGIVDWNLGVIVVSVSPQ 1321
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
S SL + +G+ + K + ++ +G ++D S +RDL L+E EF+
Sbjct: 1322 SLCSLGKVYGLDKQDTWTKFSGLMRDMGAYKVYDISGARDLALVETYAEFV--------- 1372
Query: 160 DDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
ER+N P+L+SACPGW+CYAEK G +P++++ KSPQQ +G +K + + LG
Sbjct: 1373 --ERANGGAPTPLLASACPGWVCYAEKTHGELAIPHMATTKSPQQIMGTFVKSAVARDLG 1430
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
PD +YHV+VMPCYDKKLEA+R+DF+ + +VD VLTTGEV+ L
Sbjct: 1431 VSPDRVYHVSVMPCYDKKLEASRDDFMRG-------------GVKDVDLVLTTGEVVVL- 1476
Query: 278 QLKAVNFEALEESP-------LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
L+ L E+P D + E + V+GS GGYAE VFR AA +F
Sbjct: 1477 -LEKAGLHHLREAPNYAYDLMCDGFRVPPESEIAAHFVSGS-GGYAEYVFRRAAAEIFNT 1534
Query: 331 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
I G +E+ +RN D RE L V + +L+ A+ YGF+N+QN+VR +KM+KC + FVE+M
Sbjct: 1535 PIMGAIEWVQLRNMDMREATLTVNNEVVLRVAVAYGFRNIQNLVRSLKMKKCKHHFVEIM 1594
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPL-VRSLYDEWL-EQP 448
ACPSGCLNGGGQ+ G S KEL+ L+ E+ + + +N + V LY W+ P
Sbjct: 1595 ACPSGCLNGGGQLPAPEGMSNKELVDALD----EHYRIVERERNRVDVDFLYRAWIGGAP 1650
Query: 449 GSEKAKKHVHTEYH 462
GS+ A++ + T+YH
Sbjct: 1651 GSQPAREILRTQYH 1664
>gi|417410627|gb|JAA51783.1| Putative nuclear architecture related protein, partial [Desmodus
rotundus]
Length = 429
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 197/434 (45%), Positives = 271/434 (62%), Gaps = 27/434 (6%)
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEF--LSNINKGKA------VIISLSPQSR 101
E +ISL DCLACSGC+TSAETV++ +QS +E + + NK A V+IS+SPQSR
Sbjct: 15 EKARISLDDCLACSGCVTSAETVLITQQSHEELRKILDANKTAAPGQQRLVVISVSPQSR 74
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
ASLA F ++P +KLT F K LG +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 75 ASLAVRFQLNPTDTARKLTAFFKKLGAHYVFDTAFSRNFSLLESQREFVRRFR-----GQ 129
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
+LP+L+SACPGWICYAEK GS I+PYIS+ +SPQQ +G+ +K Q+ PD
Sbjct: 130 ATCKHALPVLTSACPGWICYAEKTHGSAIIPYISTARSPQQVMGSLVKDFFAQQQRVTPD 189
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
+IYHVTVMPCYDKKLEA+R DF QE RD VD V+TTGEV L++ +
Sbjct: 190 KIYHVTVMPCYDKKLEASRPDFF----RQEHQTRD-------VDCVITTGEVFKLLEEEG 238
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
V+ LE +PLD + +N+ + G SGGY E VFRHAA+ LFG ++ + ++
Sbjct: 239 VSLAELEPAPLDSLYSNMSAQEPTSHSGGGSGGYLEHVFRHAAQELFGIHVDK-VTYRXX 297
Query: 342 RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
+ ++V + E ++ L FA YGF+N+QN+V+K+K +C Y +VEVMACPSGCLNGGG
Sbjct: 298 XXXEGQQVTQQTEARSPLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLNGGG 357
Query: 402 QIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q+K P KEL++ +E +Y V P P V+ LY WL GSE+ +HT Y
Sbjct: 358 QLK-APEVPDKELLQHVERLY-SMVRTEAPEDVPGVQELYQHWLHGEGSERTGCLLHTSY 415
Query: 462 HPVVKSITAQLHNW 475
H V K+ ++ W
Sbjct: 416 HAVEKASSSLSIRW 429
>gi|357624217|gb|EHJ75079.1| hypothetical protein KGM_01773 [Danaus plexippus]
Length = 484
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 203/502 (40%), Positives = 297/502 (59%), Gaps = 45/502 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAE 50
M+ +FS L++ DL DFI PSQ C+ V ++K K ++ S+ +Q+ +
Sbjct: 1 MASRFSGALQLTDLDDFITPSQECIKPVKIEKKKTHTGSKIKIGEDGYFDLSSGKEQKLQ 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK------------AVIISLSP 98
V+I+L DCLACSGCITSAE+V++ KQS +E L ++ K ++IS+SP
Sbjct: 61 KVEITLADCLACSGCITSAESVLITKQSQEELLRVFSERKYTDSRGVIQDVSLIVISISP 120
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
Q SLA + + P + +KL + +SLG + D + + DL+L+EA EF+ RY+ +
Sbjct: 121 QPLLSLAVRYKLEPEEATRKLAGYFRSLGADLVLDMTVAEDLSLMEAQQEFVQRYRDQAD 180
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
SD + +LPML+SACPGW+CYAEK GSYILPYIS+ KS QQ +G+ +K + K
Sbjct: 181 SDVK----TLPMLASACPGWVCYAEKAHGSYILPYISTTKSSQQVMGSLVKQFLATKRQL 236
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
P +YHVT+MPCYDKKLEA+REDF +E L +VD V+T E+ ++
Sbjct: 237 APAALYHVTLMPCYDKKLEASREDFY-----------NEILNCHDVDCVITPIELEQMLT 285
Query: 279 LKAVNFEALEESPLD-----KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
+ + +S LD M V G + SGG A+ VF +AA+ LFG+ +
Sbjct: 286 NQDKDLSDFPDSSLDWCWDVAMTPGVRRHGGRGAGSSGSGGLADEVFMYAARELFGEE-D 344
Query: 334 GHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
L +K +RN DFRE+ LE +G+ +L+FA+ GF+N+QN+V+K+K K Y +VEVMACP
Sbjct: 345 VPLVYKNLRNPDFREITLEKDGREVLRFAIANGFRNIQNLVQKLKRGKSPYHYVEVMACP 404
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
SGCLNGG Q++P G+S + L+ L+ + +E + A+P VR L+ WL G E+A
Sbjct: 405 SGCLNGGAQVRPTEGESGRALVGRLQEL-METLPPAEP-SGTAVRHLWSAWLGAAGPERA 462
Query: 454 KKHVHTEYHPVVKSITAQLHNW 475
+ +HT YH V + A W
Sbjct: 463 RHALHTTYHAVQSNDIALTTKW 484
>gi|259511475|sp|B4NSS7.2|NARF_DROSI RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GD17698
Length = 477
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 203/497 (40%), Positives = 293/497 (58%), Gaps = 47/497 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+ S L++ D+ DFI PSQ C+ V + KA K K ++ S S + V
Sbjct: 3 RLSTALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDSCFEESESGNLKLNKVD 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-----NKG-------KAVIISLSPQSR 101
ISL+DCLACSGCITSAE V++ +QS +E L + NK + ++I+L+ Q
Sbjct: 63 ISLQDCLACSGCITSAEEVLITQQSQEELLKVLQENSKNKASEDWDNVRTIVITLATQPI 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 123 LSLAHRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N +L MLSS+CPGW+CYAEK G++ILPY+S+ +SPQQ +G +K + K+
Sbjct: 175 -RENENLTMLSSSCPGWVCYAEKTHGNFILPYVSTTRSPQQIMGVLVKQILADKINVPAS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVTVMPCYDKKLEA+REDF S+ RD VD V+T+ EV L+
Sbjct: 234 RIYHVTVMPCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSEAQ 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ LD +NV E ++ + SGGYAE +F+ AAK +F + + LEFK
Sbjct: 283 RPLSQYDLFDLDWPWSNVRPEFMVWAHEKTLSGGYAEHIFKFAAKHIFNEDLTTELEFKQ 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLNG 399
+RN DFRE+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NG
Sbjct: 343 LRNRDFREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKLSNYHFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G QI+P GQ +EL + LE +Y N+ ++P +N L + +Y+++L+ ++K+ + +HT
Sbjct: 403 GAQIRPTTGQHVRELTRKLEELY-HNLPRSEP-ENSLTKHIYNDFLDGFQTDKSYEVLHT 460
Query: 460 EYHPVVKSITAQLH-NW 475
YH VV ++ L+ NW
Sbjct: 461 RYHDVVSDLSISLNINW 477
>gi|259511474|sp|B4IMH3.2|NARF_DROSE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GM20417
Length = 477
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 202/497 (40%), Positives = 295/497 (59%), Gaps = 47/497 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
++S L++ D+ DFI PSQ C+ V + KA K K ++ S S + V
Sbjct: 3 RWSTALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDSCFEESESGNLKLNKVD 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFL-----SNINKG-------KAVIISLSPQSR 101
ISL+DCLACSGCITSAE V++ +QS +E L ++ NK + ++I+L+ Q
Sbjct: 63 ISLQDCLACSGCITSAEEVLITQQSQEELLKILQENSKNKASEDWDNVRTIVITLATQPL 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 123 LSLAHRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N +L MLSS+CPGW+CYAEK G++ILPY+S+ +SPQQ +G +K + K+
Sbjct: 175 -RENENLTMLSSSCPGWVCYAEKTHGNFILPYVSTTRSPQQIMGVLVKQILADKINVPAS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVTVMPCYDKKLEA+REDF S+ RD VD V+T+ EV L+
Sbjct: 234 RIYHVTVMPCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSEAQ 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ LD +NV E ++ + SGGYAE +F+ AAK +F + + LEFK
Sbjct: 283 RPLSQYDLFDLDWPWSNVRPEFMVWAHEKTQSGGYAEHIFKFAAKHIFNEDLTTELEFKQ 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLNG 399
++N DFRE+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NG
Sbjct: 343 LKNRDFREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKLSNYHFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G QI+P GQ +EL + LE +Y N+ ++P +N L + +Y+++L+ ++K+ + +HT
Sbjct: 403 GAQIRPTTGQHVRELTRKLEELY-HNLPRSEP-ENSLTKHIYNDFLDGFQTDKSYEMLHT 460
Query: 460 EYHPVVKSITAQLH-NW 475
YH VV ++ L+ NW
Sbjct: 461 RYHDVVSDLSISLNINW 477
>gi|195030456|ref|XP_001988084.1| GH10760 [Drosophila grimshawi]
gi|259511279|sp|B4JBE6.1|NARF_DROGR RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GH10760
gi|193904084|gb|EDW02951.1| GH10760 [Drosophila grimshawi]
Length = 476
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 293/496 (59%), Gaps = 46/496 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+FS L++ DL DFI PSQ C+ V++ K K K V S S KQ+ + V+
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVTIDKTKSKTGAKITVEADGYYEESESGKQKLQKVE 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSR 101
I+L+DCLACSGCITSAE V++ +QS +E L + + + ++ ++S Q
Sbjct: 63 ITLQDCLACSGCITSAEGVLITQQSQEELLKVLRENQTLKASGDNEQVRTIVFTISVQPL 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + +S + + L +L+ LG + T + DL L+E EF+ R+
Sbjct: 123 LSLAHRYDLSLEEAGRHLAGYLQQLGADYVLCTKIADDLALLECRQEFVERF-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R+N+ L MLSS+CPGW+CYAEK G++ILP+I++ +SPQQ +G +K + +KLG
Sbjct: 175 -RNNAELSMLSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGVLVKQLLAEKLGVSGS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVT+MPCYDKKLEA+REDF ++ S RD VD V+T EV ++Q +
Sbjct: 234 RIYHVTIMPCYDKKLEASREDFYSEVSSS----RD-------VDCVITAIEVEQMLQAEE 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ E L T+ E L+ + SGGYAE +F++AAK LF + L+F+
Sbjct: 283 QTLQQFEPKDLHWPWTDQQPESMLWAHESTMSGGYAEHIFKYAAKELFNEDTPTELQFRA 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNG 399
+RN DF E+ LE EGK LLKFA+ GF+N+QN+V+K+K K YQFVEVMACPSGC+NG
Sbjct: 343 LRNRDFSEICLEKEGKVLLKFAIANGFRNIQNLVQKLKRGKGPGYQFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G Q++P GQ ++L + LE +Y + + ++P N + +Y ++ + ++K+ + +HT
Sbjct: 403 GAQVRPTTGQHVRQLTQQLEELY-KQLPRSNP-DNTHTKQIYADFFDGTHTDKSAQLLHT 460
Query: 460 EYHPVVKSITAQLHNW 475
YH V K TA W
Sbjct: 461 SYHAVEKLNTALNIKW 476
>gi|380011549|ref|XP_003689864.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Apis florea]
Length = 486
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 197/505 (39%), Positives = 296/505 (58%), Gaps = 49/505 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK------------QQ 48
M+ +FS L+I +L DFI PSQ C+ ++ T K+ ++ ++
Sbjct: 1 MASRFSGALQITNLDDFITPSQECIKPIEIQTLKSKTGAKIKIEEDGTPIALNEIGQFKK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA------------VIISL 96
E V+I+L DCLACSGCITSAE++++ +QS +E + + + +++SL
Sbjct: 61 LEKVEITLADCLACSGCITSAESILVTQQSQEELMRVFREKTSQYQSKDGISSTFIVVSL 120
Query: 97 SPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
S Q+ S+AEH+ ++ Q KL + LG + D + + D L+E+ EFI RY+ +
Sbjct: 121 SVQAVLSIAEHYNLNSEQALNKLAGYFYQLGADIVLDMTVADDFALLESAKEFIQRYRAN 180
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
+ + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ + +
Sbjct: 181 KNG----VKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLAETM 236
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
P++IYH+TVMPCYDKKLEA+REDF + E RD VD V+T E+ +
Sbjct: 237 NLSPEQIYHITVMPCYDKKLEASREDFY----NHEIKSRD-------VDCVITPIEIEQM 285
Query: 277 IQ-----LKAVNFEALEESPLDKMLTNVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK 330
L +N E + + + + ++ LY SGGYAE + R+AAK LF +
Sbjct: 286 FNEYNVILSEINNEKKIQRIFESKMKYLKND--LYGHSGSGSGGYAEFILRYAAKYLFNE 343
Query: 331 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
+ +EFK +RN DF+E + +G+TLL FA+ GF+N+QN+V+K+K KC Y +VEVM
Sbjct: 344 T-DIIIEFKNLRNPDFQEAIFQKDGQTLLTFAIANGFRNIQNLVQKLKRGKCLYDYVEVM 402
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGS 450
ACP GCLNGG QI+P +EL LE+IY E + ++P +N +V++LY WL +
Sbjct: 403 ACPCGCLNGGAQIRPLNNVQSRELALKLESIYRE-LPQSNPEQNLIVKNLYKNWLGGEYT 461
Query: 451 EKAKKHVHTEYHPVVKSITAQLHNW 475
+KA + HT+YH + K TA W
Sbjct: 462 DKALAYFHTQYHEIKKVDTALAIKW 486
>gi|328793099|ref|XP_003251826.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Apis mellifera]
Length = 483
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/503 (38%), Positives = 292/503 (58%), Gaps = 48/503 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDK----------PQVSTSSKQQAE 50
M+ +FS L+I +L DFI PSQ C+ ++ K+ P T ++ E
Sbjct: 1 MASRFSGALQITNLDDFITPSQECIKPIEIQALKSKTXXXXXXXGTPIPLNETGQFKKLE 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK-----------GKAVIISLSPQ 99
V+I+L DCLACSGCITSAE++++ +QS +E + + +++SLS Q
Sbjct: 61 KVEITLADCLACSGCITSAESILVTQQSQEELMRVFREKTQYQSRDGISSTFIVVSLSVQ 120
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
+ S+AEH+ ++ Q KL + LG + D + + D L+E+ EFI RY+ ++
Sbjct: 121 AVLSIAEHYNLNSEQALNKLAGYFYQLGADIVLDMTVADDFALLESAKEFIQRYRANKNG 180
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
+ + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ + +
Sbjct: 181 ----AKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLAKIMDLS 236
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
P +IYH+TVMPCYDKKLEA+REDF D ++ +VD V+T E+ +
Sbjct: 237 PKQIYHITVMPCYDKKLEASREDFY-----------DHEIKSRDVDCVITPIEIEQMFNE 285
Query: 280 KAVNFEALEESPLDKMLTNVDDEGHLY-------GVAGSSGGYAETVFRHAAKTLFGKVI 332
V L E ++K + + + Y SGGYAE + R+AAK LF +
Sbjct: 286 YNV---ILSEIKIEKKIQRIFESKMKYLKNDLYGHSGSGSGGYAEFILRYAAKYLFNET- 341
Query: 333 EGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392
+ +EFK++RN DF+E + +G+ LL FA+ GF+N+QN+V+K+K KC Y +VE+MAC
Sbjct: 342 DIIIEFKSLRNPDFQEAVFQKDGQILLTFAIANGFRNIQNLVQKLKRGKCLYDYVEIMAC 401
Query: 393 PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEK 452
P GCLNGG QI+P +EL LE+IY E + +DP +N +V++LY WL ++K
Sbjct: 402 PCGCLNGGAQIRPLNNVQSRELALKLESIYRE-LPQSDPEQNLIVKNLYKNWLGGEYTDK 460
Query: 453 AKKHVHTEYHPVVKSITAQLHNW 475
A + HT+YH + K TA W
Sbjct: 461 ALAYFHTQYHEIKKVNTALAIKW 483
>gi|116007464|ref|NP_001036428.1| CG17683, isoform A [Drosophila melanogaster]
gi|74866134|sp|Q8SYS7.1|NARF_DROME RecName: Full=Probable cytosolic Fe-S cluster assembly factor
CG17683
gi|17945827|gb|AAL48960.1| RE37350p [Drosophila melanogaster]
gi|30923684|gb|EAA46161.1| CG17683, isoform A [Drosophila melanogaster]
gi|220948432|gb|ACL86759.1| CG17683-PA [synthetic construct]
gi|220957562|gb|ACL91324.1| CG17683-PA [synthetic construct]
Length = 477
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/497 (40%), Positives = 295/497 (59%), Gaps = 47/497 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+ S L++ D+ DFI PSQ C+ V + KA K K ++ S S + V
Sbjct: 3 RLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEESESGNLKLNKVD 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQSR 101
ISL+DCLACSGCITSAE V++ +QS +E L + +K KA ++ +L+ Q
Sbjct: 63 ISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKASEDWDNVRTIVFTLATQPI 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 123 LSLAYRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N +L MLSS+CPGW+CYAEK G+++LPY+S+ +SPQQ +G +K + K+
Sbjct: 175 -RENENLTMLSSSCPGWVCYAEKTHGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPAS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVTVMPCYDKKLEA+REDF S+ RD VD V+T+ EV L+
Sbjct: 234 RIYHVTVMPCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSEAQ 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ LD +NV E ++ + SGGYAE +F++AAK +F + ++ LEFK
Sbjct: 283 QPLSQYDLLDLDWPWSNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQ 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNG 399
++N DFRE+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NG
Sbjct: 343 LKNRDFREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G QI+P GQ +EL + LE +Y +N+ ++P +N L + +Y+++L+ S+K+ +HT
Sbjct: 403 GAQIRPTTGQHVRELTRKLEELY-QNLPRSEP-ENSLTKHIYNDFLDGFQSDKSYDVLHT 460
Query: 460 EYHPVVKSITAQLH-NW 475
YH VV ++ L+ NW
Sbjct: 461 RYHDVVSELSISLNINW 477
>gi|10438504|dbj|BAB15261.1| unnamed protein product [Homo sapiens]
gi|119606129|gb|EAW85723.1| nuclear prelamin A recognition factor-like, isoform CRA_b [Homo
sapiens]
gi|193787902|dbj|BAG53105.1| unnamed protein product [Homo sapiens]
Length = 374
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 8 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 67
Query: 150 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209
+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 68 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 122
Query: 210 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 269
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 123 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 171
Query: 270 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 329
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 172 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 231
Query: 330 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 232 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 290
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 449
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 291 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTD 348
Query: 450 SEKAKKHVHTEYHPVVKSITAQLHNW 475
SE A + +HT+YH V K+ T W
Sbjct: 349 SECAGRLLHTQYHAVEKASTGLGIRW 374
>gi|195164554|ref|XP_002023111.1| GL21135 [Drosophila persimilis]
gi|198473422|ref|XP_002133255.1| GA29080 [Drosophila pseudoobscura pseudoobscura]
gi|259511281|sp|B4GXC8.1|NARF_DROPE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GL21135
gi|259511282|sp|B5DK31.1|NARF_DROPS RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GA29080
gi|194105196|gb|EDW27239.1| GL21135 [Drosophila persimilis]
gi|198139449|gb|EDY70657.1| GA29080 [Drosophila pseudoobscura pseudoobscura]
Length = 477
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 199/497 (40%), Positives = 291/497 (58%), Gaps = 47/497 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSL---KKATFKNPDKPQV--------STSSKQQAEPV 52
+FS L++ DL DFI PSQ C+ + K AT K K V S S KQ+ + V
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVTVDKTATSKTGAKITVQEDGYYEESESGKQKLQKV 62
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFL------------SNINKGKAVIISLSPQS 100
+I+L+DCLACSGCITSAE+V++ +QS +E L ++ + + ++ +++ Q
Sbjct: 63 EITLQDCLACSGCITSAESVLITQQSEEELLKVLRENAKVKATGDMEQVRTIVFTIATQP 122
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA + +S + + L + +SLGV + T + DL L+E EF+ RY
Sbjct: 123 LLSLAHRYQLSAEETARHLAGYFRSLGVDYVLCTKVADDLALLECQQEFVERY------- 175
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
R N L MLSS+CPGW+CYAEK G++ILPYI++ +SPQQ +G +K + +KL
Sbjct: 176 --RDNEELTMLSSSCPGWVCYAEKTHGNFILPYIATTRSPQQIMGVLVKQFLAEKLNIPG 233
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
IYHVTVMPCYDKKLEA+R DF +++ E +VD V+T+ EV ++
Sbjct: 234 SRIYHVTVMPCYDKKLEASRMDFYSEVN-----------ESRDVDCVITSVEVEQMLNED 282
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFK 339
+ E S LD + E ++ + SGGYAE +F+ AAK LF + L FK
Sbjct: 283 ERSLSEHEASDLDWPWSEQRPESMVWSHEATLSGGYAEHIFKFAAKELFNEAPPTELSFK 342
Query: 340 TIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLN 398
+RN DFRE++LE + KT+LKFA+ GF+N+QN+V+K+K K Y FVEVMACPSGC+N
Sbjct: 343 QLRNRDFREISLEKDDKTVLKFAIANGFRNIQNLVQKLKRGKGASYHFVEVMACPSGCIN 402
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GG Q++P GQ +EL + LE +Y + + + P N + +Y ++L+ ++K+ + +H
Sbjct: 403 GGAQVRPTTGQHVRELTQQLEELY-KKLPRSQP-DNAHTKLIYRDFLDGSHTDKSNELLH 460
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K TA W
Sbjct: 461 TSYHAVEKLSTALNIKW 477
>gi|195385200|ref|XP_002051294.1| GJ13047 [Drosophila virilis]
gi|259511293|sp|B4LQR5.1|NARF_DROVI RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GJ13047
gi|194147751|gb|EDW63449.1| GJ13047 [Drosophila virilis]
Length = 476
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 198/496 (39%), Positives = 294/496 (59%), Gaps = 46/496 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+FS L++ DL DFI PSQ C+ V + K K K V S S KQ+ + V+
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVMIDKTKSKTGAKITVQADGYYEQSESGKQKLQKVE 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------------KAVIISLSPQSR 101
I+L+DCLACSGCITSAE V++ +QS +E L + + + ++ ++S Q
Sbjct: 63 ITLQDCLACSGCITSAEGVLITQQSQEELLKVLRENQTLKASGDNDQVRTIVFTISVQPL 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + + + + L +L+ LG + T + DL L+E EF+ R+
Sbjct: 123 LSLAHRYDLGVEEASRYLAGYLRQLGADYVLCTKIADDLALLECRQEFVERF-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N+ L MLSS+CPGW+CYAEK G++ILP+I++ +SPQQ +G +K + +KLG
Sbjct: 175 -RDNAELSMLSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGVLVKQLLAEKLGVPGS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYH T+MPCYDKKLEA+REDF +++ RD VD V+T+ EV ++Q +
Sbjct: 234 RIYHATIMPCYDKKLEASREDFYSEVNGS----RD-------VDCVITSIEVEQMLQAEE 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYG-VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+ E S +D T+ E ++ A SGGYAE +F++AAK LF + L+FK
Sbjct: 283 QTLQQFEPSDIDWPWTDQQPEFPVWAHEATMSGGYAEHIFKYAAKELFSEETPNELQFKA 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNG 399
+RN DF E++LE +GKT+LKFA+ GF+N+QN+V+K+K K Y FVEVMACPSGC+NG
Sbjct: 343 LRNRDFSEISLEKDGKTVLKFAIANGFRNIQNLVQKLKRGKGPGYHFVEVMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G Q++P GQ +EL + LE +Y + + ++P N + +Y ++L+ ++K+ + +HT
Sbjct: 403 GAQVRPTTGQHVRELTQQLEELY-KQLPRSNP-DNSYTKQIYTDFLDGAHTDKSLELLHT 460
Query: 460 EYHPVVKSITAQLHNW 475
YH V K TA W
Sbjct: 461 SYHAVEKLNTALNIKW 476
>gi|193786438|dbj|BAG51721.1| unnamed protein product [Homo sapiens]
Length = 374
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 249/386 (64%), Gaps = 19/386 (4%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 8 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 67
Query: 150 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209
+ R++ +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 68 VRRFR-----GQAGCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 122
Query: 210 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 269
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 123 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 171
Query: 270 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 329
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 172 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 231
Query: 330 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 232 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 290
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 449
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 291 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTD 348
Query: 450 SEKAKKHVHTEYHPVVKSITAQLHNW 475
SE A + +HT+YH V K+ T W
Sbjct: 349 SECAGRLLHTQYHAVEKASTGLGIRW 374
>gi|170049636|ref|XP_001870903.1| nitrate, fromate, iron dehydrogenase [Culex quinquefasciatus]
gi|167871388|gb|EDS34771.1| nitrate, fromate, iron dehydrogenase [Culex quinquefasciatus]
Length = 435
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/450 (41%), Positives = 280/450 (62%), Gaps = 37/450 (8%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG----------- 89
V+ S Q+ E V+I+L DCLACSGCITSAE V++ +QS +E L +N+
Sbjct: 8 VTISGLQKLEKVEITLADCLACSGCITSAEGVLITQQSQEELLKVMNENNLAKLNNQLDA 67
Query: 90 -KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
+ ++ +++ Q SLA+ + + + F+++ + + LG + DT + DL LIE NE
Sbjct: 68 VRFIVFTVAQQPILSLAKRYNLPAEETFERVAGYFRKLGADLVVDTKIADDLALIEGRNE 127
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
FI R+ ++++ LPML+S+CPG++CYAEK GS+ILPYI+S +SPQQ +G +
Sbjct: 128 FIERFNTNRQT--------LPMLASSCPGFVCYAEKTHGSFILPYIASTRSPQQIMGVLV 179
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K ++ + LG D IYHVTVMPCYDKKLEA+REDF S E RD VD V+
Sbjct: 180 KKYLAKLLGIAADRIYHVTVMPCYDKKLEASREDFF----SDVENCRD-------VDCVI 228
Query: 269 TTGEVLDLIQLKAVN-FEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKT 326
T+ E+ ++ V + +E++P+D + ++G S SGGY+E +F++AA+
Sbjct: 229 TSIEIEQMLDGSGVQALQIVEKAPIDWPWSTGRPPVFVWGHESSGSGGYSEYLFKYAARK 288
Query: 327 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
LF ++ H+EFK +RNSD RE LE G+ +L+FA+ GF+N+QN+V+K+K KC+Y +
Sbjct: 289 LFNVAVD-HVEFKNLRNSDLREAVLEQNGEVVLRFAIANGFRNIQNMVQKLKRGKCNYHY 347
Query: 387 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 446
+E+MACPSGCLNGG QI+P GQS +EL LE +Y ++ ++P +N V +Y +L+
Sbjct: 348 IEIMACPSGCLNGGAQIRPTGGQSQRELTAELEALY-RSLPASNP-ENEAVEMVYTTFLD 405
Query: 447 QPGSEKAKKH-VHTEYHPVVKSITAQLHNW 475
G +K +HT YHP+ K TA W
Sbjct: 406 NAGDNNMRKEFLHTSYHPIEKMNTALNIKW 435
>gi|195434493|ref|XP_002065237.1| GK14772 [Drosophila willistoni]
gi|259511294|sp|B4MUM8.1|NARF_DROWI RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GK14772
gi|194161322|gb|EDW76223.1| GK14772 [Drosophila willistoni]
Length = 477
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 197/497 (39%), Positives = 292/497 (58%), Gaps = 47/497 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVST---------SSKQQAEPV 52
+FS L++ DL DFI PSQ C+ V++ K K K V S KQ+ + V
Sbjct: 3 RFSGALQLTDLDDFITPSQECIKPVTIDKTKSKTGAKITVQEDGYYEESEESGKQKLQKV 62
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK------------AVIISLSPQS 100
+I+L+DCLACSGCITSAE V++ +QS +E L + + + ++ ++S Q
Sbjct: 63 EITLQDCLACSGCITSAEGVLITQQSQEELLKVLRENQKLKATGDNDLVQTIVFTISMQP 122
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA + +S + + L+ + ++LG + T + DL LIE EF+ R+
Sbjct: 123 ILSLAHRYQLSVEETARHLSGYFRNLGADYVLCTKVADDLALIECRQEFVERF------- 175
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
R L MLSS+CPGW+CYAEK G++ILPYI++ +SPQQ +G +KH + +K
Sbjct: 176 --RDKEDLTMLSSSCPGWVCYAEKTHGNFILPYIATTRSPQQIMGVLVKHFLAEKFNVPG 233
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
IYH TVMPCYDKKLEA+REDF +++ RD VD V+T+ EV ++
Sbjct: 234 SRIYHATVMPCYDKKLEASREDFYSEVNGS----RD-------VDCVITSIEVEQMLMED 282
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYG-VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFK 339
+ E LD T+ E ++ A SGGYAE +F++AAK LF + + L+FK
Sbjct: 283 ERSLSQHEPVDLDWPWTDQRPESMIWAHEATMSGGYAEHIFKYAAKELFSEDTDNELKFK 342
Query: 340 TIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLN 398
+RN DFRE++LE + KT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+N
Sbjct: 343 QLRNRDFREISLEKDDKTVLKFAIANGFRNIQNLVQKLKRGKGANYHFVEVMACPSGCIN 402
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GG Q++P GQ +EL + LE +Y + + ++ P N +++Y ++L+ ++K+ +H
Sbjct: 403 GGAQVRPTTGQHVRELTQQLEELY-KKLPISQP-DNSHTKAIYGDFLDGAHTDKSHDLLH 460
Query: 459 TEYHPVVKSITAQLHNW 475
T YH V K TA W
Sbjct: 461 TSYHAVEKLNTALNIKW 477
>gi|289740813|gb|ADD19154.1| nitrate iron dehydrogenase [Glossina morsitans morsitans]
Length = 479
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 199/502 (39%), Positives = 300/502 (59%), Gaps = 57/502 (11%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----------KKATFKNPDKPQVSTSSKQQAEPVKI 54
FS L++ DL DFI PSQ C+ + K + ++ Q + ++ + V+I
Sbjct: 4 FSGALQLTDLDDFITPSQECIKPVIIEKTKPKTGAKISIQDDGYYQETEDGSRKLQKVEI 63
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINK-------------GKAVIISLSPQSR 101
+L+DCLACSGCITSAE V++ +QS +E L +N+ + V+ ++S Q
Sbjct: 64 TLQDCLACSGCITSAEGVLITQQSQEELLKVLNENQSLKSNEKFSDEARVVVFTISQQPV 123
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK-QSQESD 160
SLA+ +G++ K L+ +L+ LG I +T + DL L+E EFI R++ +SQE
Sbjct: 124 LSLAQRYGLTVENTIKHLSGYLRHLGADIILNTKIADDLALLECRREFIDRFRSKSQEQ- 182
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
LPML+S+CPGW+CYAEK G++ILPY+S+ +SPQQ +G +K + +KL +
Sbjct: 183 ------PLPMLTSSCPGWVCYAEKTHGNFILPYLSTTRSPQQIMGILVKQWLAKKLKVKS 236
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
++IYHVT+MPCYDKKLEA+R DF ++++ ++ VD V+T+ E+ ++
Sbjct: 237 EQIYHVTIMPCYDKKLEASRHDFFSEVENSKD-----------VDCVITSIEIEQML--- 282
Query: 281 AVNFEALEESPLDKMLTNVDD------EGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIE 333
+ E+LE+ P K D ++G S SGGY+E +F+++AK LF +
Sbjct: 283 --SSESLEKYPASKFDDVFDVVDDNGPSDTIWGYESSTSGGYSEHIFKYSAKHLFDMDV- 339
Query: 334 GHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
LE+K +RN DFREV LE +GK LLKFA+ GF+N+QN+V+K+K K Y FVEVMACP
Sbjct: 340 ATLEYKNLRNPDFREVVLEKDGKCLLKFAIANGFRNIQNLVQKLKRGKTQYHFVEVMACP 399
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
SGC+NGG QI+P GQ+ +EL LE +Y + + ++P N S+Y+ + + +EK+
Sbjct: 400 SGCINGGAQIRPVSGQTVRELTSQLEHLYRQ-LPQSNP-NNLTCESMYNNFFDGFHTEKS 457
Query: 454 KKHVHTEYHPVVKSITAQLHNW 475
K +HT YH V K TA W
Sbjct: 458 KMFLHTTYHAVEKLNTALNIKW 479
>gi|118791474|ref|XP_319772.3| AGAP009023-PA [Anopheles gambiae str. PEST]
gi|259511483|sp|Q7PWB8.3|NARF_ANOGA RecName: Full=Probable cytosolic Fe-S cluster assembly factor
AGAP009023
gi|116117618|gb|EAA14804.3| AGAP009023-PA [Anopheles gambiae str. PEST]
Length = 478
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 197/498 (39%), Positives = 296/498 (59%), Gaps = 48/498 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV-----------STSSKQQAEPV 52
+FS L++ DL DFI PSQ C+ +K T K+ ++ S+S Q+ E V
Sbjct: 3 RFSSALQLTDLDDFITPSQECIKPVKIETSKSKTGAKITIQEDGSYVQESSSGIQKLEKV 62
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI------------NKGKAVIISLSPQS 100
+I+L DCLACSGCITSAE V++ +QS +E L + ++ K V+ ++S Q
Sbjct: 63 EITLADCLACSGCITSAEGVLISQQSQEELLRVMNANNLAKLNNQRDEIKFVVFTVSQQP 122
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA + ++P F+ + + K LG + DT + DL LIE NEFI RY +++
Sbjct: 123 ILSLARKYNLTPEDTFEHIAGYFKKLGADMVVDTKIADDLALIECRNEFIERYNTNRKL- 181
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
LPML+S+CPGW+CYAEK G++ILPYI++ +SPQQ +G +K ++ ++L
Sbjct: 182 -------LPMLASSCPGWVCYAEKTHGNFILPYIATTRSPQQIMGVLVKQYLAKQLQTTG 234
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ-L 279
D IYHVTVMPCYDKKLEA+REDF S+ E RD VD V+T+ E+ ++ L
Sbjct: 235 DRIYHVTVMPCYDKKLEASREDFF----SEVENSRD-------VDCVITSIEIEQMLNSL 283
Query: 280 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ + +E +D V ++G S SGGYAE +F++AA+ LF ++ + F
Sbjct: 284 DLPSLQLVERCAIDWPWPTVRPSAFVWGHESSGSGGYAEYIFKYAARKLFNVQLDT-VAF 342
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RN+D RE LE G+ L++FA+ GF+N+QN+V+K+K K Y +VE+MACPSGCLN
Sbjct: 343 KPLRNNDMREAVLEQNGQVLMRFAIANGFRNIQNMVQKLKRGKSTYDYVEIMACPSGCLN 402
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGS-EKAKKHV 457
GG QI+P+ G++ +EL LE +Y ++ + P +N V+++Y + + G K + +
Sbjct: 403 GGAQIRPEEGRAARELTAELECMY-RSLPQSTP-ENDCVQTMYATFFDSEGDLNKRQSLL 460
Query: 458 HTEYHPVVKSITAQLHNW 475
HT YH + K +A W
Sbjct: 461 HTSYHQIEKINSALNIKW 478
>gi|116007468|ref|NP_001036430.1| CG17683, isoform C [Drosophila melanogaster]
gi|51951088|gb|EAL24590.1| CG17683, isoform C [Drosophila melanogaster]
gi|323301260|gb|ADX35972.1| RE10877p [Drosophila melanogaster]
Length = 473
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 201/495 (40%), Positives = 293/495 (59%), Gaps = 47/495 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV--------STSSKQQAEPVKIS 55
+ S L++ D+ DFI PSQ V + KA K K ++ S S + V IS
Sbjct: 3 RLSRALQLTDIDDFITPSQ--PVQIDKARSKTGAKIKIKGDGCFEESESGNLKLNKVDIS 60
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQSRAS 103
L+DCLACSGCITSAE V++ +QS +E L + +K KA ++ +L+ Q S
Sbjct: 61 LQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKASEDWDNVRTIVFTLATQPILS 120
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
LA + I + L + +SLG + T + D+ L+E EF+ RY R
Sbjct: 121 LAYRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY---------R 171
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
N +L MLSS+CPGW+CYAEK G+++LPY+S+ +SPQQ +G +K + K+ I
Sbjct: 172 ENENLTMLSSSCPGWVCYAEKTHGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRI 231
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
YHVTVMPCYDKKLEA+REDF S+ RD VD V+T+ EV L+
Sbjct: 232 YHVTVMPCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSEAQQP 280
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
+ LD +NV E ++ + SGGYAE +F++AAK +F + ++ LEFK ++
Sbjct: 281 LSQYDLLDLDWPWSNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLK 340
Query: 343 NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGG 401
N DFRE+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NGG
Sbjct: 341 NRDFREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCINGGA 400
Query: 402 QIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
QI+P GQ +EL + LE +Y +N+ ++P +N L + +Y+++L+ S+K+ +HT Y
Sbjct: 401 QIRPTTGQHVRELTRKLEELY-QNLPRSEP-ENSLTKHIYNDFLDGFQSDKSYDVLHTRY 458
Query: 462 HPVVKSITAQLH-NW 475
H VV ++ L+ NW
Sbjct: 459 HDVVSELSISLNINW 473
>gi|195357063|ref|XP_002044933.1| GM20417 [Drosophila sechellia]
gi|194124275|gb|EDW46318.1| GM20417 [Drosophila sechellia]
Length = 478
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 200/500 (40%), Positives = 292/500 (58%), Gaps = 52/500 (10%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVS-------------TSSKQQAE 50
++S L++ D+ DFI PSQ V + KA K K ++ S +
Sbjct: 3 RWSTALQLTDIDDFITPSQ--PVQIDKARSKTGAKIKIKGDSCFEESEMVSLQSGNLKLN 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFL-----SNINKG-------KAVIISLSP 98
V ISL+DCLACSGCITSAE V++ +QS +E L ++ NK + ++I+L+
Sbjct: 61 KVDISLQDCLACSGCITSAEEVLITQQSQEELLKILQENSKNKASEDWDNVRTIVITLAT 120
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
Q SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 121 QPLLSLAHRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY----- 175
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
R N +L MLSS+CPGW+CYAEK G++ILPY+S+ +SPQQ +G +K + K+
Sbjct: 176 ----RENENLTMLSSSCPGWVCYAEKTHGNFILPYVSTTRSPQQIMGVLVKQILADKINV 231
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
IYHVTVMPCYDKKLEA+REDF S+ RD VD V+T+ EV L+
Sbjct: 232 PASRIYHVTVMPCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLS 280
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLE 337
+ LD +NV E ++ + SGGYAE +F+ AAK +F + + LE
Sbjct: 281 EAQRPLSQYDLFDLDWPWSNVRPEFMVWAHEKTQSGGYAEHIFKFAAKHIFNEDLTTELE 340
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGC 396
FK ++N DFRE+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC
Sbjct: 341 FKQLKNRDFREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKLSNYHFVEVMACPSGC 400
Query: 397 LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 456
+NGG QI+P GQ +EL + LE +Y N+ ++P +N L + +Y+++L+ ++K+ +
Sbjct: 401 INGGAQIRPTTGQHVRELTRKLEELY-HNLPRSEP-ENSLTKHIYNDFLDGFQTDKSYEM 458
Query: 457 VHTEYHPVVKSITAQLH-NW 475
+HT YH VV ++ L+ NW
Sbjct: 459 LHTRYHDVVSDLSISLNINW 478
>gi|383849491|ref|XP_003700378.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AAEL012261-like [Megachile rotundata]
Length = 485
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/502 (39%), Positives = 290/502 (57%), Gaps = 44/502 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK------------QQ 48
M+ +FS L++ L DFI PSQ C+ ++ K+ ++ ++
Sbjct: 1 MTSRFSGALQLTSLDDFITPSQECIKPIEIQASKSKTGAKIKIEEDGVPSILNEVGQFEK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK------------GKAVIISL 96
+ V+I+L DCLACSGCITSAE+V++ +QS +E L + K +++SL
Sbjct: 61 LQKVEITLADCLACSGCITSAESVLVTQQSQEELLRVFKEKVSECQNEDGTCSKFIVVSL 120
Query: 97 SPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
S Q+ S+A+ + ++P Q KL + LG + D + + D L+E+ EF+ RYK +
Sbjct: 121 SVQAVLSIAKRYDLNPEQALNKLAGYFYQLGADIVVDMTIADDFALLESAKEFVERYKAA 180
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
+ + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H+ +
Sbjct: 181 KGG----ATNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLAETK 236
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
G P++IYHVT+MPCYDKKLEA+REDF + E RD VD V+T E+ +
Sbjct: 237 GLSPEQIYHVTLMPCYDKKLEASREDFY----NAERNSRD-------VDCVITPIELEQM 285
Query: 277 IQLKAVNFEALEESPLDK---MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
+ V + E + K + T + SGGYA+ +FR+AAK LF + +
Sbjct: 286 LNEYNVTLSEVNEKEVQKPFGVQTENLETNLCSHSGSGSGGYADFIFRYAAKYLFDET-D 344
Query: 334 GHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
+EFK +RN DF+E + LLKFA+ GF+N+QN+V+K+K KC Y +VEVMACP
Sbjct: 345 VIVEFKNLRNPDFQEAIFYKNEQPLLKFAIVNGFRNIQNLVQKLKRGKCPYDYVEVMACP 404
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
GCLNGG QI+P P+EL LE++Y E + ++P KN V++LY WL ++KA
Sbjct: 405 CGCLNGGAQIRPVDNIQPRELALKLESMYHE-LPESNPEKNKAVQNLYRNWLGGEYTDKA 463
Query: 454 KKHVHTEYHPVVKSITAQLHNW 475
H HT+YH + K+ A W
Sbjct: 464 LAHFHTQYHEIKKADIALAIKW 485
>gi|255075911|ref|XP_002501630.1| predicted protein [Micromonas sp. RCC299]
gi|226516894|gb|ACO62888.1| predicted protein [Micromonas sp. RCC299]
Length = 542
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 218/522 (41%), Positives = 298/522 (57%), Gaps = 71/522 (13%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV----------VSLKKAT-----------FKNPDKP--Q 40
+FS +++GDL+DFI PSQ C+ + L K + F P+KP Q
Sbjct: 3 QFSGAVKLGDLNDFINPSQACIDDIDVPAGGEMILNKRSKAPVTEDLTYLFGQPEKPIGQ 62
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-----NKGKAV-II 94
K ++ +K+SL DCLACSGCITSAETV+LE QS+DEF + + G+ V ++
Sbjct: 63 WGIEKKNDSDAIKVSLSDCLACSGCITSAETVLLEAQSVDEFKQQVAACAQSGGRRVTVV 122
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
S++PQSRASLA G+S + K+LT F KS+GV ++FDT+ +RD +L+EA EF+ R++
Sbjct: 123 SVAPQSRASLAHAAGLSAIDAAKRLTGFFKSMGVVAVFDTTAARDFSLLEAGEEFVERFR 182
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+Q + ++ + LP+L+SACPGW+CYAEKQ +LP+IS+VKSPQQ +G +K +
Sbjct: 183 -AQNQNQSQNQNPLPVLASACPGWVCYAEKQ-SPGVLPHISNVKSPQQVMGTIVKRRVAA 240
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
LG P ++HV VMPCYDKKLEA+R DF + P+VD VLTTGEV
Sbjct: 241 SLGLDPAAVFHVAVMPCYDKKLEASRGDFRGEPGVGGGDG----EGPPDVDCVLTTGEVA 296
Query: 275 DLIQLKAVNFEALEESPLD-KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
+L+ A E + + L G SGGY E VFR+AA +FG +
Sbjct: 297 ELLA-GAYGIAVKERDGYSTEAAGAREGAAALARGGGGSGGYLEHVFRYAAAKIFGIEVR 355
Query: 334 GHLEFKT--IRNSDFREVALEV-EGKTLLKFALCYGFQNLQNIVRKVK-----------M 379
G LE+K RN D REV LE +G TLL+FA YGF+N+QN+VRK+K
Sbjct: 356 GALEYKIPRARNPDLREVTLEGPDGTTLLRFAQAYGFRNIQNMVRKIKPTAHDIHLGTSR 415
Query: 380 RKCDYQFVEVMACPSGCLNGGGQI---------------KPKPGQSPKELIKTLETIYL- 423
C Y +VE+MACPSGCLNGGGQ+ +P+ + KEL+ LET Y
Sbjct: 416 DGCGYDYVEIMACPSGCLNGGGQLPPPPPPGEIAGSGGARPR-AMTAKELVDELETKYRW 474
Query: 424 --ENVMLADPFKNPLVRSLYDEWLEQP-GSEKAKKHVHTEYH 462
V P +P V Y +W+ GSE+A+ HT YH
Sbjct: 475 GDGTVEPRPPDASPEVAEAYRDWVRGAVGSERARALFHTRYH 516
>gi|427787813|gb|JAA59358.1| Putative nuclear architecture related protein [Rhipicephalus
pulchellus]
Length = 481
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 198/501 (39%), Positives = 292/501 (58%), Gaps = 46/501 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFK------NPDKPQVSTSSKQQA--- 49
M++ FS LRI DL+DFI PSQ C+ V+++K K D + QA
Sbjct: 1 MADGFSGVLRITDLNDFIGPSQECIKPVTVEKRPGKLGSIKIGDDGSYLQVDESGQASKL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSR 101
E +I+L DCLACSGC+TSAETV++ +QS ++ + + K K ++++++PQ
Sbjct: 61 EKAQITLTDCLACSGCVTSAETVLITQQSSEQLYTVLKENAELPEEKRKLIVVTVAPQVA 120
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
AS A + + KLT F K+LG + D++ R+ LIE +FI R+ + ++SD
Sbjct: 121 ASFAGKYSVDYESASAKLTGFFKTLGAHYVLDSTFGREFALIEVLRDFIERWAR-RDSD- 178
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
++LP+L+S+CPG++CYAEK G +LP+IS +SPQQ +G+ +K + +LG + D
Sbjct: 179 ---RTALPLLASSCPGFVCYAEKTHGDVLLPHISRARSPQQIMGSLVKKFLASRLGKKAD 235
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
+IYHV+VMPCYDKKLEA+R DF DE +VD V+T+ EV ++ +
Sbjct: 236 QIYHVSVMPCYDKKLEASRADFY-----------DEIYSTRDVDCVITSVEVESMLAKED 284
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
+F+ L + D + + G Y GS SGGY E VF AA+ LF + E + FKT
Sbjct: 285 KSFDELPSAASDSLF-RCEVGGRPYRHPGSGSGGYCEYVFVEAARLLFHRRPE-EVVFKT 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN DFREV LE+ G+T+L+FA+ GF+N+QN+V+K+K KC Y F+E+MACP+GCLNGG
Sbjct: 343 LRNQDFREVTLELGGETVLRFAIANGFRNIQNVVQKMKRAKCPYHFIEIMACPAGCLNGG 402
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW--LEQP----GSEKAK 454
Q++P G S + L++ +E Y V P N V +Y +W LE P G
Sbjct: 403 AQLRPDDGDS-RALLRRVEDAY-NAVQCQPPGANKAVLEVYRDWLGLEDPLHGTGGSGDA 460
Query: 455 KHVHTEYHPVVKSITAQLHNW 475
+ T YH + K+ A W
Sbjct: 461 TLLRTTYHALEKTTNALNIRW 481
>gi|387017402|gb|AFJ50819.1| Nuclear prelamin A recognition factor-like [Crotalus adamanteus]
Length = 457
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/449 (40%), Positives = 272/449 (60%), Gaps = 33/449 (7%)
Query: 22 QNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDE 81
QN + + + +N +K + + KI L DCLAC CIT+ E V + +Q+ +E
Sbjct: 21 QNAIADVLNSNDENKEKSEFHKLAN-----AKIFLSDCLACDSCITAEEAVKVYQQNPNE 75
Query: 82 FLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFD 133
F +N K K +++S+ PQS A F +S + ++L FLKSLGV +FD
Sbjct: 76 FFRVLNLNKKCDTSKHKVLVVSICPQSLPYFAAKFNLSVTEAARRLCGFLKSLGVHYVFD 135
Query: 134 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 193
T+ + D +L+E+ EF+ RY+Q + + LPMLSSACPGWI YAE+ L S ++P+
Sbjct: 136 TTIAADFSLLESQKEFVQRYRQQNQEE-----HVLPMLSSACPGWIQYAERVLPSMVIPH 190
Query: 194 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 253
I + KSPQQ +G+ +K++ ++ PD+I+H+ V PCYDKKLEA REDF L + ++
Sbjct: 191 ICTAKSPQQIMGSLVKNYFARQQNLSPDKIFHIMVAPCYDKKLEALREDFYTHLYNSQD- 249
Query: 254 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 313
VD VLT+GEV +++ + ++ + + E D +L + +E L G S
Sbjct: 250 ----------VDCVLTSGEVFQMMEQRKISLKEISEVSFDTLLGGIKEE--LNRRDGRSD 297
Query: 314 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNI 373
GY E +F+HAAK LF ++ L +K ++N DF+EV LE +G+T+L+FA YGF+N+QN+
Sbjct: 298 GYLEHIFKHAAKELFNTEVK-ELTYKILKNKDFQEVTLEKDGETVLRFAAAYGFRNIQNM 356
Query: 374 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK 433
+ K+K KC Y FVEV+ACP GCLNG GQ + + G+ K L+K +E +Y V + P
Sbjct: 357 ILKLKRGKCSYHFVEVLACPGGCLNGNGQAQTEDGKPDKALLKQMEDVY-ATVPVQIPET 415
Query: 434 NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
N V+ LY EWLE S KA++ +HT+Y+
Sbjct: 416 NGHVQKLYQEWLEGMESSKAQESLHTKYN 444
>gi|198416311|ref|XP_002131190.1| PREDICTED: similar to Nuclear prelamin A recognition factor-like
protein (Iron-only hydrogenase-like protein 1) (IOP1)
[Ciona intestinalis]
Length = 478
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 206/501 (41%), Positives = 293/501 (58%), Gaps = 49/501 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFK----------NPDKPQVSTSSK-Q 47
M+ FS L++ DL+DFIAPSQ C+ V +KK+ K + +V TS K +
Sbjct: 1 MTSNFSGALQLTDLNDFIAPSQECIKPVEVKKSIPKKGLSKIKVSNDGSYMEVDTSGKSK 60
Query: 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL--------SNINKGKAVIISLSPQ 99
+ + +I+L DCLACSGC+TSAETV++ QS DEF ++ K K +++S+SPQ
Sbjct: 61 KLQKAEITLNDCLACSGCVTSAETVLIAMQSKDEFYKVLKENKETSPEKRKIIVVSVSPQ 120
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
SRAS+A + + K + F KSLG + DT+ + ++ L++ EFI RY+
Sbjct: 121 SRASIAAKHKLDVRKAGKAIDAFFKSLGADIVLDTTFAEEIALVKTAEEFIQRYR----- 175
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
D +S SLP+L+S+CPGWICYAEK G LPYISSVKSPQQ +G+ +K + +
Sbjct: 176 -DNQSKKSLPVLTSSCPGWICYAEKTHGDLTLPYISSVKSPQQILGSLVKETVSSHVNKT 234
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
PD +YHVTVMPCYDKKLEA+R+DF D+ +VD VLT+GEV ++I
Sbjct: 235 PDNVYHVTVMPCYDKKLEASRQDFY-----------DDIYSTRDVDLVLTSGEVEEMIAG 283
Query: 280 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFK 339
+ + L P +D + L G SGGY V++HAA+ LFG +E + +K
Sbjct: 284 ECGTMDDLSIIPPQLKAARLDTDEPLSHGGGGSGGYLHHVYKHAAQQLFGVKVE-EVVYK 342
Query: 340 TIRNS-DFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
RN+ DFR+V L + +GK LL FA YGF+++QN+V+K+K +C+Y FVEVMACPSGCL
Sbjct: 343 PARNNKDFRDVTLKDADGKILLNFASVYGFRSIQNLVQKMKRGRCNYHFVEVMACPSGCL 402
Query: 398 NGGGQIKPKPGQSP--KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKK 455
NGGGQIK G K++ +++ + E P S ++ + K+K+
Sbjct: 403 NGGGQIKAPGGDRELQKDIFSSVQIAFNEI-----PPTEAREDSAVNQTIMDYDITKSKQ 457
Query: 456 HVHTEYHPVVKSITAQLH-NW 475
HT+YH V K T L+ W
Sbjct: 458 LFHTQYHAVEKDETLSLNVKW 478
>gi|325187084|emb|CCA21626.1| nuclear prelamin A recognition factorlike protein pu [Albugo
laibachii Nc14]
Length = 517
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 200/504 (39%), Positives = 293/504 (58%), Gaps = 65/504 (12%)
Query: 11 IGDLSDFIAPSQNCVVSLKKATFKNP----------------------------DKPQVS 42
+GDL+D+I PSQ C+ L T KNP KP +
Sbjct: 20 LGDLNDYIQPSQACINPLFIDT-KNPLVSEIQSDPKRVILAIEDDWNQDVKLPETKPNII 78
Query: 43 TSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV----IISLSP 98
+ QQ ISL DCLACSGC+TSAETV++ +QS + L + + I+++S
Sbjct: 79 RETAQQR--ATISLDDCLACSGCVTSAETVLITQQSYADMLEKLQSVPSPYFKKIMTISS 136
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK---- 154
SRASLA HF + V KL TF ++LG IFDT C ++ L+EA EF+ RY+
Sbjct: 137 ASRASLAAHFNLPIHVVHCKLVTFFRTLGFDLIFDTGCFENIMLLEARQEFLYRYQNQTP 196
Query: 155 ------QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
Q++ D ++LPML+S+CPGWICYAEK + LP+I + KSPQQ G +
Sbjct: 197 TPWNHTQTESDSDPAIPTALPMLASSCPGWICYAEKAQPN-ALPFIDTTKSPQQIAGTIV 255
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K + ++ D+++HVT+MPC+DKKLEA+R+DF + E RD VD VL
Sbjct: 256 KDFLSREFLIESDQVFHVTLMPCFDKKLEASRKDF-----QRSEDNRD-------VDCVL 303
Query: 269 TTGEVLDLIQLKAVNFEALEESPL---DKMLTNVDDEGHL-YGVA--GSSGGYAETVFRH 322
T E++DL Q + + F+ L+E+ L + ++ + +G + YG + SSGG E +FR+
Sbjct: 304 ATSELIDLFQAQKIEFKDLKEASLTQKEAQMSGISPDGQIVYGSSPFASSGGQLEHIFRY 363
Query: 323 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 382
AAK LF I G LE+ RN DFREV+L ++GK +L FA+ YGF+N+Q+++ K++ KC
Sbjct: 364 AAKNLFNVDICGPLEYSIGRNPDFREVSLSIQGKVVLHFAIAYGFRNIQSVITKLRRGKC 423
Query: 383 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 442
Y +VEVMACPSGCLNGGGQIKP L+ ++ T + + DP K+ + +Y+
Sbjct: 424 SYHYVEVMACPSGCLNGGGQIKPSSSLESSTLVSSV-TKRFQELREYDPQKDAFCKYIYE 482
Query: 443 EWLEQPGSEKAKKHVHTEYHPVVK 466
++ ++P S+ A++ +HT+Y V K
Sbjct: 483 KYFDKPFSQVAQRALHTKYRRVPK 506
>gi|116007466|ref|NP_001036429.1| CG17683, isoform D [Drosophila melanogaster]
gi|51951087|gb|EAL24589.1| CG17683, isoform D [Drosophila melanogaster]
gi|294661893|gb|ADF28787.1| RE20880p [Drosophila melanogaster]
Length = 430
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 185/439 (42%), Positives = 269/439 (61%), Gaps = 37/439 (8%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQ 99
V ISL+DCLACSGCITSAE V++ +QS +E L + +K KA ++ +L+ Q
Sbjct: 14 VDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKASEDWDNVRTIVFTLATQ 73
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 74 PILSLAYRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY------ 127
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
R N +L MLSS+CPGW+CYAEK G+++LPY+S+ +SPQQ +G +K + K+
Sbjct: 128 ---RENENLTMLSSSCPGWVCYAEKTHGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVP 184
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
IYHVTVMPCYDKKLEA+REDF S+ RD VD V+T+ EV L+
Sbjct: 185 ASRIYHVTVMPCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSE 233
Query: 280 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ LD +NV E ++ + SGGYAE +F++AAK +F + ++ LEF
Sbjct: 234 AQQPLSQYDLLDLDWPWSNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEF 293
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCL 397
K ++N DFRE+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+
Sbjct: 294 KQLKNRDFREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCI 353
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
NGG QI+P GQ +EL + LE +Y +N+ ++P +N L + +Y+++L+ S+K+ +
Sbjct: 354 NGGAQIRPTTGQHVRELTRKLEELY-QNLPRSEP-ENSLTKHIYNDFLDGFQSDKSYDVL 411
Query: 458 HTEYHPVVKSITAQLH-NW 475
HT YH VV ++ L+ NW
Sbjct: 412 HTRYHDVVSELSISLNINW 430
>gi|193669298|ref|XP_001943301.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AAEL012261-like [Acyrthosiphon pisum]
Length = 477
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 195/486 (40%), Positives = 283/486 (58%), Gaps = 39/486 (8%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVS----------TSSKQQ 48
+S FS L++ DL DFI PS C+ V +K++ K ++ ++
Sbjct: 2 ISSGFSGALKLTDLDDFITPSLECIKPVQFEKSSLGTGAKIKIGDDGSYMQESKNGKSEK 61
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL------SNINKGKAVIISLSPQSRA 102
+ V+ISL DCLACSGCITSAETV++++QS DE + + ++ K +++S+S QS
Sbjct: 62 LKQVEISLTDCLACSGCITSAETVLVQQQSTDEMMRVFDAQNGLDNKKFIVVSISIQSCV 121
Query: 103 SLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 162
S+A IS KL + K LG + D + DL L+E+ NEFI RYK ++ S
Sbjct: 122 SIATSKNISVECAASKLCGYFKKLGADLVLDIKLAEDLALLESQNEFIERYKSAKAS--- 178
Query: 163 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
+ LPML+S+CPGW+CYAEK G++ILPYIS VKSPQQ +G+ IK + +
Sbjct: 179 KVQKILPMLASSCPGWVCYAEKTHGNFILPYISRVKSPQQIMGSFIKDFVSNLRNKPRTD 238
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
IYH+TVMPC+DKKLEA+R+ F F +D+ E +VD V+T+ EV L+ + +
Sbjct: 239 IYHLTVMPCFDKKLEASRDQF-FDVDT----------ETKDVDCVITSIEVDALLVKQDI 287
Query: 283 NFEALEESPLDKMLTNVDDEGH--LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
NF + D + N+ ++ H SGGYA +F +AAK LF I+ +EFK
Sbjct: 288 NFNDIVPENFDTGMNNITEDNHNLFTSSGSGSGGYAHHIFCNAAKELFNINID-KVEFKP 346
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+RN D +E LEV G +L+FA+ GF+N+QN+V+K+K ++C Y +VEVMACPSGCLNGG
Sbjct: 347 LRNVDMKEATLEVNGVVVLRFAIANGFRNIQNLVQKLKSKRCPYDYVEVMACPSGCLNGG 406
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
Q+K +S +E I LE Y E + +P +N V+ LY WL + ++ T
Sbjct: 407 AQVKQMEIKSNREFINALENTYNE-LPKRNPTQNNSVKYLYSNWLNE---NNKNDYLFTT 462
Query: 461 YHPVVK 466
Y + K
Sbjct: 463 YREIKK 468
>gi|194769624|ref|XP_001966903.1| GF22738 [Drosophila ananassae]
gi|259511277|sp|B3N018.1|NARF_DROAN RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GF22738
gi|190619860|gb|EDV35384.1| GF22738 [Drosophila ananassae]
Length = 476
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/496 (38%), Positives = 285/496 (57%), Gaps = 46/496 (9%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+FS L++ D+ DFI P+Q C+ + + K K+ K V S + KQ+ + ++
Sbjct: 3 RFSGALQLTDIDDFITPAQECIKPIPINKKNSKSGAKISVQEDGYYEESGTGKQKLQKLE 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK------------AVIISLSPQSR 101
I+L+DCLACSGCITSAE V++ +QS +E L +++ K V+ S++ Q
Sbjct: 63 ITLQDCLACSGCITSAEGVLITQQSQEELLKVLHENKKLKAEEDNNLSRTVVFSVATQPL 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + IS + + L + +SLG + T + DL L+E NEF+ +Y
Sbjct: 123 ISLAYRYKISVEETARHLAGYFRSLGADYVLSTKVADDLALLECRNEFLEKY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N+ L M SS+CPGW+CYAEK G++ILP+I++ +SPQQ +G +K ++ +KL
Sbjct: 175 -RENNDLTMFSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGVLVKQYLGKKLNLPAS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
IYHVTVMPCYDKKLEA+REDF ++++ +VD V+T+ EV ++
Sbjct: 234 RIYHVTVMPCYDKKLEASREDFFSEVNASR-----------DVDCVITSVEVEQMLLEVD 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
A E + LD + E +Y + SGGYAE VFR AA+ LF L+
Sbjct: 283 QTLPAQEPADLDWPWWDERPELMVYSHESTYSGGYAEHVFRFAARELFNDARPIQLQIDQ 342
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLNG 399
RN D +E LE +G LL+FA+ GF+N+QN+V+K+K K + FVE+MACPSGC+NG
Sbjct: 343 PRNRDLKEFFLEKDGIVLLRFAIANGFKNIQNLVQKLKRGKGSKFHFVEIMACPSGCING 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G Q++P GQ +EL + LE +Y + + + P N + LYD++ + G++K+ +HT
Sbjct: 403 GAQVRPISGQHVRELTQKLEELYTK-LPRSQP-DNIGTKKLYDDFFDGFGTDKSHNLLHT 460
Query: 460 EYHPVVKSITAQLHNW 475
YH V K I A W
Sbjct: 461 SYHSVDKLIPALNIKW 476
>gi|339233454|ref|XP_003381844.1| nuclear prelamin A recognition factor [Trichinella spiralis]
gi|316979294|gb|EFV62102.1| nuclear prelamin A recognition factor [Trichinella spiralis]
Length = 497
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 193/490 (39%), Positives = 287/490 (58%), Gaps = 56/490 (11%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSL--KKATFKNP-----DKPQVSTSSKQQA--EP 51
+S FS T+R+ DL+DFIAPSQNC+ + K++T D+ +++ SS+++ +P
Sbjct: 26 LSMSFSGTVRLTDLNDFIAPSQNCIKPILDKRSTANQSERMRFDRDEINKSSQEKRILKP 85
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI----NKGKAV--------IISLSPQ 99
V ++L DCLACSGCITSAETV++E+Q EFL I N K + ++S+SPQ
Sbjct: 86 VSVTLDDCLACSGCITSAETVLIEQQGPKEFLKMIEEFSNDNKVISKELKSLFVVSISPQ 145
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
SRASLA + ++ +KL FL+SLG DT+ +R+ +L+ EF+ Y+++ +
Sbjct: 146 SRASLAASYNLTVEVTQRKLCAFLRSLGADICLDTTFARNFSLLATAEEFVDYYRKNYLN 205
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
S S P++++ CPGW+CYAEK + ++P +S V+SPQ G+ +K ++ + +
Sbjct: 206 CTSTSLSISPLITAICPGWVCYAEKSVSDVVIPLMSKVRSPQAIAGSFVKDYLSKTMNIL 265
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
P+ I HVT+MPC+DKKLEA+R F+ D+G EVD VL+T ++ ++
Sbjct: 266 PNRIRHVTIMPCFDKKLEASRSAFL----------ADDG-SSREVDLVLSTSDIYMIV-- 312
Query: 280 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEF 338
+E S L L ++ DE LY GS SGGY E VF++AAK LF + +E+
Sbjct: 313 -------IENSDL-LCLFDIFDENTLYNHEGSGSGGYLEFVFKYAAKELFNLDVSS-VEY 363
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
RN D +E L + K L ALCYGF+N+QN++RK++ KC Y FVEVMACPSGCLN
Sbjct: 364 VAQRNKDIQEARLIHDNKVLFHMALCYGFRNIQNLIRKIRAGKCAYHFVEVMACPSGCLN 423
Query: 399 GGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQP-GSEKAK 454
GGGQI+ +EL +L T+ P + P ++ L + WL SEKA
Sbjct: 424 GGGQIRGIDKMTSNVVEELYHSLPTV--------QPGEWPNLKLLINRWLGGSLQSEKAN 475
Query: 455 KHVHTEYHPV 464
+ + T+Y V
Sbjct: 476 RMLKTQYQAV 485
>gi|302849037|ref|XP_002956049.1| hypothetical protein VOLCADRAFT_66610 [Volvox carteri f.
nagariensis]
gi|300258554|gb|EFJ42789.1| hypothetical protein VOLCADRAFT_66610 [Volvox carteri f.
nagariensis]
Length = 417
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 177/429 (41%), Positives = 263/429 (61%), Gaps = 24/429 (5%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
+++L DCLACSGCITSAETV+L++QS DEFLS + + V++++SPQSR +LA ++G+
Sbjct: 7 QVTLHDCLACSGCITSAETVLLQQQSGDEFLSRLADPHTTVVVTVSPQSRTALAAYYGLC 66
Query: 112 PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
P Q +L +LK LGV++++D + +RDL L+E EF+ R+ S LP++
Sbjct: 67 PSQALARLVGWLKWLGVRAVWDLTTARDLVLLEEAAEFMNRWVCMYVS-----AGPLPVM 121
Query: 172 SSACPG--WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
S+CPG W+CYAEK G+ +LPY+S+ +SPQ +G +K + G P +YHVT+M
Sbjct: 122 GSSCPGTGWVCYAEKTHGTRVLPYLSTTRSPQGAMGGLVKSLVAAAWGVTPGSLYHVTIM 181
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PCYDKKLEA+R++ + D V L EV+ V
Sbjct: 182 PCYDKKLEASRDELTTTATTTTAAGTDAAGAGAAVGGPLP--EVM-------VRHATAAP 232
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFRE 348
PL + DD+ + SSGGYA+ VFR AA+ L+G +V G L ++T RN+D +
Sbjct: 233 DPLLPGVVPADDQLYSLPHGSSSGGYADFVFRTAARELWGVEVPPGPLPWRTRRNADLQP 292
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ G++L+ A YGF+N+Q +++++K +C Y +VEVMACPSGCLNGGGQIKP PG
Sbjct: 293 -RVGAPGQSLV-VARVYGFRNIQTLLQQLKRGRCPYHYVEVMACPSGCLNGGGQIKPGPG 350
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVKS 467
+P++LI+ LE +Y +V P NP V +LY WL +PG+ A++ +HT + K+
Sbjct: 351 VTPQQLIEQLELLY--DVAARSPADNPAVAALYGSWLGGRPGAPPARQLLHTTFREREKT 408
Query: 468 ITAQ-LHNW 475
+TA + NW
Sbjct: 409 VTAATVTNW 417
>gi|156376379|ref|XP_001630338.1| predicted protein [Nematostella vectensis]
gi|259511296|sp|A7SDA8.1|NARF_NEMVE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
v1g210509
gi|156217357|gb|EDO38275.1| predicted protein [Nematostella vectensis]
Length = 441
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 261/420 (62%), Gaps = 41/420 (9%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVST----------SSKQ 47
M+ FS L++ +L DFI PSQ C+ +K K K K ++ + K
Sbjct: 1 MAAHFSGALQLTNLDDFITPSQECIKPVKIEKKPGAKGLAKIKIESDGSYVQLSEDGGKS 60
Query: 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL----SN---INKGKA-----VIIS 95
+ + +I+L DCLACSGCIT+AE+V++ +QS DE SN + +GK V+IS
Sbjct: 61 KLQKAEITLNDCLACSGCITTAESVLITQQSQDELFKILDSNRKLVKEGKGDVQKLVVIS 120
Query: 96 LSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQ 155
+SPQSRAS+A F ++ KKL+ F K LGV +FDT+ +RD +L E+ EF+ R++
Sbjct: 121 ISPQSRASIAAKFNLTINDAAKKLSAFFKQLGVHYVFDTTFARDFSLAESQREFVRRFRA 180
Query: 156 SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
Q+ D+ PML+SACPGW+CYAEK G YILPYISS KSPQQ +G+ +K H+
Sbjct: 181 YQQGDE----GCTPMLASACPGWMCYAEKTHGDYILPYISSTKSPQQIMGSLVKDHLASV 236
Query: 216 LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLD 275
+G PD +YHV VMPC+DKKLEA+R+DF + S +VD V++T EV
Sbjct: 237 VGKSPDSVYHVCVMPCFDKKLEASRDDFYNDMYSTR-----------DVDCVISTVEVET 285
Query: 276 LIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH 335
+IQ +F +++ LDK+ + D G SGG+ E +F++A++ LF + ++
Sbjct: 286 MIQDHCPDFNSIDPVELDKLYCSSDSGDFFGHSGGGSGGFLEHIFKYASRELFDEKVD-V 344
Query: 336 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
L +KT+RN DFREV L+V+GK +LKFA YGF+N+QN+V+K+K K Y FVEVMACPSG
Sbjct: 345 LTYKTLRNKDFREVTLQVDGKDVLKFAAAYGFRNIQNLVQKLKRGKSPYHFVEVMACPSG 404
>gi|26451001|dbj|BAC42607.1| unknown protein [Arabidopsis thaliana]
gi|31711720|gb|AAP68216.1| At4g16440 [Arabidopsis thaliana]
Length = 203
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 146/203 (71%), Positives = 180/203 (88%), Gaps = 1/203 (0%)
Query: 274 LDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
+DLI+LK V+F+ LEESPLD++LTNV +EG LYGVAGSSGGYAET+FRHAAK LFG+ IE
Sbjct: 1 MDLIKLKGVDFKDLEESPLDRVLTNVTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIE 60
Query: 334 GHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
G LEFKT+RNSDFREV L++EGKT+LKFALCYGFQNLQNIVR+VK RKCDYQ+VE+MACP
Sbjct: 61 GPLEFKTLRNSDFREVTLQLEGKTVLKFALCYGFQNLQNIVRRVKTRKCDYQYVEIMACP 120
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML-ADPFKNPLVRSLYDEWLEQPGSEK 452
+GCLNGGGQIKPK GQS KELI +LE Y+ + L DP++NP + L++EWL++PGS +
Sbjct: 121 AGCLNGGGQIKPKTGQSQKELIHSLEATYMNDTTLNTDPYQNPTAKRLFEEWLKEPGSNE 180
Query: 453 AKKHVHTEYHPVVKSITAQLHNW 475
AKK++HT+YHPVVKS+T+QL+NW
Sbjct: 181 AKKYLHTQYHPVVKSVTSQLNNW 203
>gi|428162681|gb|EKX31801.1| hypothetical protein GUITHDRAFT_149054 [Guillardia theta CCMP2712]
Length = 485
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 188/460 (40%), Positives = 271/460 (58%), Gaps = 78/460 (16%)
Query: 45 SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-NKGK--AVIISLSPQSR 101
SK Q +P KI+L DCLACSGCITSAE+V++ +QS+DEFLS + NK +++S+SPQ+
Sbjct: 39 SKVQLKPAKITLNDCLACSGCITSAESVLITQQSVDEFLSVVENKLNDIKIVVSVSPQAW 98
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKS-------IFDTSCSRDLTLIEACNEFIARYK 154
AS+A + IS +++T K LG S + D S RDL+L+E+C EF+ R
Sbjct: 99 ASVATQYNISGPSALARISTVFKQLGAISVSSMNVAVLDISLFRDLSLVESCQEFVHRLT 158
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ--TIGATIKHHI 212
+++ P+++SACPGW+CYAEK S LP++SSVKSPQQ G +K
Sbjct: 159 AERKT---------PVIASACPGWVCYAEKTQHS-ALPFLSSVKSPQQISAAGTLVKQMF 208
Query: 213 CQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE 272
++LG +P IYHV +MPC+DKKLEA+R+DF+ Q DS EVD VLT+ E
Sbjct: 209 ARRLGVKPSSIYHVCLMPCFDKKLEASRDDFIEQ-DSNSR----------EVDLVLTSAE 257
Query: 273 VLDLIQLKAVNFEALEESPLDKMLTNVDDE----GHLYGVAGSSGGYAETVFRHAAKTLF 328
+LDL+ K +NF ++E ++ + + +L+GV GSSG +A+ VF HAA+ +F
Sbjct: 258 ILDLLARKGINFLEVQEGSIENVFGETMSQQAVTNNLFGVHGSSGNFAKEVFVHAARQIF 317
Query: 329 GK---------VIEGHLE--------------------------FKTIRNSDFREVAL-- 351
GK +E +E +K +RNSDF E+ L
Sbjct: 318 GKDVRVTEASDDVEMQIEDPSSSSSSSSSSSSSSSSSSPPINCVWKQVRNSDFHELVLFD 377
Query: 352 EVEGKT-LLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLNGGGQIKPKPG- 408
+ + KT LLKFA CYGF+N+QNI+R++K K C Y ++EVMACPSGC+NGGGQI+P
Sbjct: 378 QRDNKTPLLKFARCYGFRNIQNIIRQIKSSKGCAYHYIEVMACPSGCVNGGGQIRPDEST 437
Query: 409 -QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 447
++PKE + ++ + P +NP V+ +Y E +Q
Sbjct: 438 KEAPKERLLRVQETFRNGQSERPPHENPDVKRIYQEVKQQ 477
>gi|303286549|ref|XP_003062564.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456081|gb|EEH53383.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 388
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 183/425 (43%), Positives = 247/425 (58%), Gaps = 61/425 (14%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL--------KKATFKNPDKPQVSTSSKQQAEP-VKIS 55
FS +++GDL+DFI PSQNCVV+L ++ + P T + P VK+S
Sbjct: 1 FSGAVKLGDLNDFINPSQNCVVALTAGEVILQRRGAPPSDLPPGAPTIYGDPSAPTVKVS 60
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV 115
L DCLACSGC+TSAETV+LE QS DEF + + RA+
Sbjct: 61 LSDCLACSGCVTSAETVLLEAQSADEFRARV--------------RAA------------ 94
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS-----LPM 170
++ + V + DT+ SRDL+L+E+C EF++RY+ ++ + + LP+
Sbjct: 95 --AMSGGRMVVVVSVVLDTTASRDLSLLESCEEFVSRYRNAKHAAVTNTPPPSPADVLPV 152
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+SACPGW+CYAEK G +L ++S+VKSPQQ +G +K I +LG ++H TVMP
Sbjct: 153 LTSACPGWVCYAEKTHGGAVLNHVSAVKSPQQVMGCIVKRKIAAELGVPASAVFHATVMP 212
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA---VNFEAL 287
C+DKKLEA+REDF D G + EVD VLTTGEV ++I + A AL
Sbjct: 213 CFDKKLEASREDFAMD---------DLGENVREVDCVLTTGEVAEMIAVAAGLGAPSSAL 263
Query: 288 EESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT--IRNS 344
+P + L+ D L+ V S SGGY + VFRHAAK L G + G L++ T RN
Sbjct: 264 AFNPRPRCLSTPPDAFQLHPVVRSGSGGYLDAVFRHAAKVLHGVDVTGPLKYATPSSRNL 323
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC----DYQFVEVMACPSGCLNGG 400
D +EV LEV+G +L+FA YGF+N+QNIVRK K Y FVE+MACPSGCLNGG
Sbjct: 324 DLKEVTLEVDGAVVLRFAAAYGFRNIQNIVRKCKAGSVATGDAYDFVEIMACPSGCLNGG 383
Query: 401 GQIKP 405
GQ+ P
Sbjct: 384 GQLPP 388
>gi|327264675|ref|XP_003217137.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 1
[Anolis carolinensis]
Length = 459
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 179/448 (39%), Positives = 261/448 (58%), Gaps = 39/448 (8%)
Query: 41 VSTSSKQQAEPV--------KISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN----- 87
V +S+++ AEP KI L DCLAC C+TS E + +Q+ EF +N
Sbjct: 27 VLSSNEENAEPSEFHKLANSKIFLSDCLACDSCVTSDEAARVFQQNQKEFFHVLNLNKKC 86
Query: 88 ---KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
K K + +S+ PQS A F + + K+L FLK LGV +FDT+ + D +++E
Sbjct: 87 DTSKHKVLAVSICPQSLPYFAAKFNLCVTEAAKRLCGFLKCLGVHYVFDTTIAADFSILE 146
Query: 145 ACNEFIARYK-QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
+ EF+ RY+ Q+QE +LPM +SACPGWI YAE+ L S + P+I + KSPQQ
Sbjct: 147 SQKEFVQRYRNQNQEE------HALPMFASACPGWIQYAERVLSSLVTPHICTAKSPQQI 200
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G+ IK + ++ D+I+H+ V PCYDKKLEA RED L Y + +
Sbjct: 201 MGSLIKGYFARQQNLSSDKIFHIIVAPCYDKKLEALREDVYAPL------YHSQ-----D 249
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 323
VD VLT+GEV +++ + V+ + E P D + +++ + S GY E +F+HA
Sbjct: 250 VDCVLTSGEVFQVMEQRKVSLKEAAEVPFDTLFGGINESDLMRHDGRRSDGYLEHIFKHA 309
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
AK LF ++ L +K ++N DF+EV LE G+T+L+FA YGF+N+QN+V K+K KC
Sbjct: 310 AKELFDTEVK-ELTYKVLKNKDFQEVTLEKGGETVLRFAAAYGFRNIQNMVLKLKKGKCS 368
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
Y FVEV+ACP GCLNG GQ + + G+ K L+K +E +Y V + P N V+ LY E
Sbjct: 369 YHFVEVLACPGGCLNGKGQAQTEDGKPDKALLKQMEEVYAA-VPVQLPETNGHVQKLYQE 427
Query: 444 WLEQPGSEKAKKHVHTEY---HPVVKSI 468
WLE S K ++ +HT+Y PV S+
Sbjct: 428 WLEGMDSVKVQQSLHTKYSSEKPVANSL 455
>gi|281204416|gb|EFA78611.1| nuclear prelamin A recognition factor-like protein [Polysphondylium
pallidum PN500]
Length = 431
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 272/475 (57%), Gaps = 78/475 (16%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSL-----KKATFKNPDKPQVST-----SSKQQAE 50
MS+KFS L++ +L DFI PSQ C+ + KK+T + DK K + E
Sbjct: 1 MSDKFSSILKLTELDDFITPSQECIKPVEISKSKKSTKVDIDKDGSYVEIDEFGEKTKLE 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG-----------KAVIISLSPQ 99
I+L DCLACSGCITSAE+V++ QS+ EF + +N K ++IS+SPQ
Sbjct: 61 KATITLNDCLACSGCITSAESVLITAQSITEFQNVLNANTSSTTAVAIAKKTIVISISPQ 120
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
SRAS+A HF + V +KL K L +FD S R+ +L+E+ EF+AR+++ E
Sbjct: 121 SRASIAAHFNLPIKIVQRKLEILFKRILNCDYVFDVSFGREFSLLESAAEFVARHRKQLE 180
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
N+ LPML SACPGWICYAEK G YILPYIS+ KSPQQ +G +K+++ +K
Sbjct: 181 ------NAPLPMLCSACPGWICYAEKSHGEYILPYISTTKSPQQIMGTLVKYYLGEKF-- 232
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
+ RD VD VL++ EVLDL++
Sbjct: 233 -------------------------------LNKNSRD-------VDCVLSSSEVLDLLK 254
Query: 279 LKAVNFEALEE-----SPLDKMLTNVDDE-GHLYGVAGSSGGYAETVFRHAAKTLFGKVI 332
K+++F LE+ P +M +D E G YGV GS+GGY E ++R+AAK LFG +
Sbjct: 255 EKSIDFVGLEDKEEEIDPQQQMFRYLDSETGSPYGVEGSTGGYFEFLYRYAAKELFGVEV 314
Query: 333 EGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392
+ +E++ RN+DF+E +L V+GK ++ FA YGF+N+QN+VRK+K+ K Y FVEVMAC
Sbjct: 315 K-EIEYQVGRNTDFKEASLVVDGKKVMTFAKAYGFRNIQNVVRKIKIGKLPYDFVEVMAC 373
Query: 393 PSGCLNGGGQIKP--KPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 445
PSGC+NGGGQIK + + K LI+ E Y E +L ++ + +Y +WL
Sbjct: 374 PSGCINGGGQIKAGSESLRDQKVLIQQAEDRYNEQQLLQPQ-QDQQINEIYKQWL 427
>gi|363740787|ref|XP_415606.3| PREDICTED: nuclear prelamin A recognition factor [Gallus gallus]
Length = 459
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 256/431 (59%), Gaps = 26/431 (6%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASL 104
KI L DCLAC C+TS E + +Q+ EF +N K K + +S+ PQS
Sbjct: 47 KILLSDCLACDNCMTSEEGARVFQQNQKEFFRILNLNKKCDTSKHKVLAVSICPQSLPYF 106
Query: 105 AEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
A F +S K+L FLKSLGV +FDT+ + D +++E+ EF+ RY++ + +
Sbjct: 107 AAKFSLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILESQREFVQRYQRRNQEE---- 162
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
+LPM +SACPGWI YAE+ L + + P+I + KSPQQ +G+ +K + ++ P++I+
Sbjct: 163 -HALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQIMGSLVKGYFARQQNLSPEKIF 221
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
HV V PCYDKKLEA REDF L + +E VD VLT+GE++ +++ K V+
Sbjct: 222 HVVVAPCYDKKLEALREDFYTALYNSQE-----------VDCVLTSGEIVQIMEQKNVSM 270
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
+ + E +D + + + + S GY E +F+HAAK LFG ++ + +K ++N
Sbjct: 271 KDVTEVAVDSLFGEIKEGDVVRHDGKRSDGYLEHIFKHAAKELFGMDVK-EITYKALKNK 329
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
DF+EV LE +G+T+L+FA YGF+N+QN+V K+K K Y FVEV+ACP GCLNG GQ +
Sbjct: 330 DFQEVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFLYHFVEVLACPGGCLNGKGQTQ 389
Query: 405 PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 464
+ G+ K L+ +E +Y + + P N V+ +Y +WLE S K ++ +HT+Y V
Sbjct: 390 TEDGKPDKALLSQMEDVYAA-IPVRLPEANVYVQKMYQDWLEGMDSRKVQETLHTKYSAV 448
Query: 465 VKSITAQLHNW 475
++ + W
Sbjct: 449 NQTASNLDIKW 459
>gi|224074857|ref|XP_002193820.1| PREDICTED: nuclear prelamin A recognition factor isoform 1
[Taeniopygia guttata]
Length = 459
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 252/432 (58%), Gaps = 26/432 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T E + +Q+ EF +N K K + +SL PQS
Sbjct: 46 AKILLSDCLACDSCMTLEEGTRVFQQNQKEFFRILNLNKKCDTSKHKILAVSLCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F S + K+L FLKSLGV +FDT+ + D +++E+ EF+ RY++ + +
Sbjct: 106 FAAKFNFSVNEAAKRLCGFLKSLGVHYVFDTTIAADFSILESQREFVQRYQRRNQEE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPM +SACPGWI YAE+ L + + +I + KSPQQ +G+ +K + ++ PD+I
Sbjct: 163 --HALPMFASACPGWIRYAERVLTNLVTSHICTAKSPQQIMGSLVKGYFARQQNLSPDKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA REDF L + EVD VLT+GE++ +++ K V+
Sbjct: 221 FHVVVAPCYDKKLEALREDFYTALYNS-----------AEVDCVLTSGEIVQIMEQKNVS 269
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ + E +D + + + + S GY E +F+HAAK LFG ++ + +K ++N
Sbjct: 270 MKDVTEVAVDSLFDGLKEGDVVRHDGKRSDGYLEHIFKHAAKELFGVDVK-EITYKALKN 328
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DFREV LE +G+T+L+FA YGF+N+QN+V K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 329 KDFREVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFFYHFVEVLACPGGCLNGKGQA 388
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + G+ K L+ +E +Y + + P N V+ +Y +WLE S K + +HT Y
Sbjct: 389 QTEDGKPDKALLAQMEEVYTA-IPVRLPEANLHVQRMYQDWLEGMDSRKVQDTLHTTYSA 447
Query: 464 VVKSITAQLHNW 475
V +S ++ W
Sbjct: 448 VNQSTSSLDIKW 459
>gi|320164863|gb|EFW41762.1| nuclear prelamin A recognition factor-like protein [Capsaspora
owczarzaki ATCC 30864]
Length = 607
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 248/442 (56%), Gaps = 68/442 (15%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
K V++SLSPQ+RA+LA F +S V +++ L+S G + DT+ SR+ +LIE EF
Sbjct: 178 KLVVVSLSPQARAALAAKFNLSIETVHQRIVAALRSFGAHLVLDTTFSREFSLIETRREF 237
Query: 150 IARYK--QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
I RY+ QSQ + + PML+SACPGW+CYAEK G+++LPYIS+ KSPQQ G+
Sbjct: 238 IDRYRAAQSQSTSKVQVTDIFPMLTSACPGWVCYAEKTHGTFVLPYISAAKSPQQVSGSI 297
Query: 208 IKHHICQKLGFR-------PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 260
+K ++ + L + PD IYHV++MPCYDKKLEA+R+DF ++ S
Sbjct: 298 VKDYLPKILRVQADGKPVLPDRIYHVSIMPCYDKKLEASRQDFYSEMYSTR--------- 348
Query: 261 IPEVDSVLTTGEVLDLIQLKAVNF-EALEESP--------LDKMLTNVDDEGHLYGVA-G 310
+VD VLTTGE+ L++ +AV+ + L +P L+ T VD +G + A G
Sbjct: 349 --DVDCVLTTGELEQLLEDRAVDLRQPLTVAPRDIPALSALEAQFTPVDAQGRIVSHAGG 406
Query: 311 SSGGYAETVFRHAAKTLFG-------------------------KVIEG----------- 334
SGGY E RHAA+ LFG +V E
Sbjct: 407 GSGGYLEHTMRHAARELFGIESITIHAASNASTASSSSADAVPMEVAEASLVASSTAGDQ 466
Query: 335 -HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
+L ++ ++N DF+E+ LE +G+ LL+FA YGF+N+QN+V+K+K +C Y FVE+MACP
Sbjct: 467 TNLTYRIVKNKDFKELTLERDGQVLLRFAAAYGFKNIQNLVQKIKRNQCQYHFVEIMACP 526
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
SGCLNGGGQIKP G+S K+ + +E YL +P + V + EW
Sbjct: 527 SGCLNGGGQIKPDEGESAKDFLSRVELAYLSQPS-REPGVDASVERIESEWFRDVDEASR 585
Query: 454 KKHVHTEYHPVVKSITAQLHNW 475
+ T+YH V K ++ L W
Sbjct: 586 ANILRTKYHAVEKFVSELLIKW 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 23/103 (22%)
Query: 3 EKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAE------------ 50
++FS L++ DL DFI PS C+ + + + +A+
Sbjct: 4 KQFSGALQLTDLDDFITPSLECIKPVPVDRLPASQAAATPGTIRVEADGSYVQLTASATS 63
Query: 51 -----------PVKISLKDCLACSGCITSAETVMLEKQSLDEF 82
I+L DCLACSGCITSAE+V++ QS +E
Sbjct: 64 ASASPTATKLKRAAITLNDCLACSGCITSAESVLITSQSTEEL 106
>gi|163954939|ref|NP_080548.3| nuclear prelamin A recognition factor [Mus musculus]
gi|81904446|sp|Q9CYQ7.1|NARF_MOUSE RecName: Full=Nuclear prelamin A recognition factor; AltName:
Full=Iron-only hydrogenase-like protein 2; Short=IOP2
gi|12850788|dbj|BAB28853.1| unnamed protein product [Mus musculus]
gi|16359251|gb|AAH16090.1| Nuclear prelamin A recognition factor [Mus musculus]
gi|26349103|dbj|BAC38191.1| unnamed protein product [Mus musculus]
gi|148702887|gb|EDL34834.1| nuclear prelamin A recognition factor [Mus musculus]
Length = 462
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 246/418 (58%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T E V L +QS +FL +N K + +++S+ PQS
Sbjct: 52 AKIFLSDCLACDSCVTVEEGVQLSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPY 111
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY Q E E
Sbjct: 112 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE- 170
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG I+PY+ + KSPQQ +G+ +K + ++ P++I
Sbjct: 171 ----LPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 226
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA RE L+ T D VLT+GE+ +++ ++
Sbjct: 227 FHVVVAPCYDKKLEALREGLSTTLNGARGT-----------DCVLTSGEIAQIMEQSDLS 275
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ + L + V + H GV SS G+ VFRHAAK LFG+ +E + ++ +RN
Sbjct: 276 VKDIAVDTLFGDMKEVAVQRH-DGV--SSDGHLAHVFRHAAKELFGEHVE-EITYRALRN 331
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF EV LE G+ LL+FA YGF+N+QN+++K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 332 KDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIQKLKKGKLPYHFVEVLACPRGCLNGRGQA 391
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G + + L++ +E IY + + P + V+ LY EWLE S K ++ +HT Y
Sbjct: 392 QTEDGHTDRALLQQMEGIY-SGIPVRPPESSTHVQELYQEWLEGTESPKVQEVLHTSY 448
>gi|26345230|dbj|BAC36265.1| unnamed protein product [Mus musculus]
Length = 462
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 246/418 (58%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T E V L +QS +FL +N K + +++S+ PQS
Sbjct: 52 AKIFLSDCLACDSCVTVEEGVQLSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPY 111
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY Q E E
Sbjct: 112 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE- 170
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG I+PY+ + KSPQQ +G+ +K + ++ P++I
Sbjct: 171 ----LPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 226
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA RE L+ T D VLT+GE+ +++ ++
Sbjct: 227 FHVVVAPCYDKKLEALREGLSTTLNGARGT-----------DCVLTSGEIAQIMEQSDLS 275
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ + L + V + H GV SS G+ VFRHAAK LFG+ +E + ++ +RN
Sbjct: 276 VKDIAVDTLFGDMKEVAVQRH-DGV--SSDGHLAHVFRHAAKELFGEHVE-EITYRALRN 331
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF EV LE G+ LL+FA YGF+N+QN+++K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 332 KDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIQKLKKGKLPYHFVEVLACPRGCLNGRGQA 391
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G + + L++ +E IY + + P + V+ LY EWLE S K ++ +HT Y
Sbjct: 392 QTEDGHTDRALLQQMEGIY-SGIPVRPPESSTHVQELYQEWLEGTESPKVQEVLHTSY 448
>gi|149758758|ref|XP_001490420.1| PREDICTED: nuclear prelamin A recognition factor [Equus caballus]
Length = 456
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/425 (39%), Positives = 251/425 (59%), Gaps = 33/425 (7%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V + +Q+ +F N+NK K + +S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTAEEGVQVSQQNAKDFFRVLNLNKKCNTSEHKVLAVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY Q E +
Sbjct: 106 FAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQREFVRRYHQHSEGE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I
Sbjct: 163 --PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA R+DF L S D VLT+GE++ +++ V
Sbjct: 221 FHVVVAPCYDKKLEALRDDFPSALRSSRGA-----------DCVLTSGEIVQIMEQSDV- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + + +E SS G VFRHAAK LF + + G + ++T+RN
Sbjct: 269 --SVKDAAVDTLFGDCKEEEVRRHGGASSDGCLVHVFRHAAKELFNEDV-GEVTYRTLRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ LL+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVLLRFAAAYGFRNIQNVILKLKKGKSPYHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY-- 461
+ + G++ K L++ +E IY +V + P + V+ LY EWL+ S + ++ +HT Y
Sbjct: 386 QTEDGRADKALLRQMEGIYA-DVPVRAPEASARVQELYQEWLDGADSPRVQEALHTAYQG 444
Query: 462 --HPV 464
HP
Sbjct: 445 PGHPA 449
>gi|321470135|gb|EFX81112.1| hypothetical protein DAPPUDRAFT_211441 [Daphnia pulex]
Length = 480
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 183/498 (36%), Positives = 276/498 (55%), Gaps = 45/498 (9%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCV-----VSLKKATFKNPDKPQVS-----TSSKQQAEP 51
S +FS +++ DL DFI PSQ C+ ++K+ T K Q+ T ++ +P
Sbjct: 4 SSRFSSIVQLTDLDDFINPSQECIKPAKTANVKQVTSAGSAKIQIGDDGTYTQINKEGQP 63
Query: 52 VK-----ISLKDCLACSGCITSAETVMLEKQSLDEFL---------SNINKGKAVIISLS 97
K I+L DCLACSGCITSAE+V++ +Q+ EFL S +++ LS
Sbjct: 64 EKLEKAQITLNDCLACSGCITSAESVLIGQQNHTEFLKLCKEIQLSSESRMYDKIVVGLS 123
Query: 98 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
Q S A F +SP++ KL+ + LG +FD D+ L+E ++F+ R+++
Sbjct: 124 SQPILSFANKFQVSPIEARAKLSALFRQLGAAKVFDVESFADMCLVECGHDFVQRFREKS 183
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
+ +S+P+L+SACPGWICYAEK GS+ILP+IS VKSPQQ IK + +L
Sbjct: 184 -----TNATSVPVLASACPGWICYAEKTHGSWILPHISEVKSPQQIAATFIKDLLPNELQ 238
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
+ V +MPC+DKKLEA+R DF+ E + +VD V+T E+ ++
Sbjct: 239 TDASRLAVVMIMPCFDKKLEASRSDFL-----------REDQQTKDVDFVITPVEIEQIL 287
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ V F L+ S +D + ++ +G SGGYAE V R AAK L+ +E H+
Sbjct: 288 EELDVEFTDLDSSHVDHLSKAEIPTWNIPSGSG-SGGYAEHVLRFAAKELYDVTLE-HIT 345
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
F+ ++NSD RE LE++G+ +L A+C GF+N+QN+V+K+K +K Y +VEVMACPSGCL
Sbjct: 346 FQPVKNSDIREAFLEMDGQQVLSVAICNGFRNIQNLVQKMKRKKRTYDYVEVMACPSGCL 405
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
NGG Q++ + ++ K L+ LE ++ + + L WL + E+ K +
Sbjct: 406 NGGAQLRLESNET-KILLSNLEILHTK--IEKHDIDETKADDLCHAWLGKSSIEERLKRL 462
Query: 458 HTEYHPVVKSITAQLHNW 475
T YH V KS A W
Sbjct: 463 RTNYHAVQKSTNALTVKW 480
>gi|432952174|ref|XP_004084989.1| PREDICTED: nuclear prelamin A recognition factor-like [Oryzias
latipes]
Length = 454
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/435 (36%), Positives = 258/435 (59%), Gaps = 27/435 (6%)
Query: 35 NPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNI 86
PD Q + +Q P + L CL+C GC++ E++ + +QSL+E +
Sbjct: 26 GPDPEQEEVNEQQSEAPAPLLLSACLSCEGCVSEQESLKISQQSLEEVEQVLALNKRCDA 85
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 146
+K + ++ S+ PQS A FG+ + +KL FLKS+GV+ +FDT+ + +++E
Sbjct: 86 SKHRVLVASVCPQSLPFFAVKFGVDVPEAGQKLCGFLKSIGVQFVFDTTLAAGFSILETQ 145
Query: 147 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
EFI RY++ +LP+ +S+CPGWI YAE+ LGS + P+I + +SPQQ +G
Sbjct: 146 KEFIQRYRRRHHDP-----HALPLFTSSCPGWIRYAERVLGSLVTPHICTARSPQQIMGC 200
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K CQ+ P++++HV + PC+DKKLEA RE+F L +E +VD
Sbjct: 201 LVKDFFCQQQKLSPEKVFHVVLAPCFDKKLEAVREEFYSSL-----------METRDVDC 249
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 326
VLT+ E+ L++ + V+ E L+ PLD++L D S G+ E VF+HAAK
Sbjct: 250 VLTSKEIYRLMEQRKVSVEELDSVPLDQVLGEAADAALTRHDGRGSEGFLEHVFKHAAKE 309
Query: 327 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
LFG ++ + +KT+RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + YQ
Sbjct: 310 LFGLDVQ-EVTYKTLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPYQL 368
Query: 387 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 446
VEV++CP GCL+G GQ + + G+ + L++ +E +Y ++ + P NP ++ LY +WL+
Sbjct: 369 VEVLSCPGGCLSGRGQSE-EAGRVDRALVQQMEEVY-SSLPVRLPELNPALKVLYQDWLQ 426
Query: 447 QPGSEKAKKHVHTEY 461
S + K +HTEY
Sbjct: 427 GQDSLQTSKLLHTEY 441
>gi|345806724|ref|XP_537935.3| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Canis
lupus familiaris]
Length = 456
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/418 (38%), Positives = 253/418 (60%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLAC C+T+ E + + +Q++ +F N+NK K + +S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTAEEGLQVSQQNVKDFFRVLNLNKKCDPSQHKVLAVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q E +
Sbjct: 106 FAAKFRLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYQQHSEEE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I
Sbjct: 163 --PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARQQNLSPDKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA REDF + +R D VLT+GE+ +++ +
Sbjct: 221 FHVIVAPCYDKKLEALREDF----PTAPHGFR-------SADCVLTSGEIAQIMEQSDLT 269
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++++ +D + + +E SS GY VFRHAAK LF + + G + ++T+RN
Sbjct: 270 ---VKDAAVDTVFGGLKEEEVRRHDGASSDGYLAHVFRHAAKQLFDEDV-GEVTYRTLRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ LL+FA YGF+N+QN+V K+K + Y FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFPYHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G++ K L++ +E IY ++ + P + V+ LY EWL+ S +A++ +HT+Y
Sbjct: 386 QTEDGRADKALLRQMEGIY-ADIPVRPPESSAHVQELYQEWLDGADSPRAQEALHTKY 442
>gi|148236349|ref|NP_001085771.1| nuclear prelamin A recognition factor [Xenopus laevis]
gi|82184347|sp|Q6GP25.1|NARF_XENLA RecName: Full=Nuclear prelamin A recognition factor
gi|49118837|gb|AAH73323.1| MGC80731 protein [Xenopus laevis]
Length = 456
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 166/427 (38%), Positives = 250/427 (58%), Gaps = 37/427 (8%)
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
Q KI L DCLAC C+TS E + Q+ E +N+ K V+ S+SP
Sbjct: 39 HQLAEAKIFLSDCLACGNCVTSEEGAKIFAQNQKELFKVLNRNKKCDSSLHKLVVASISP 98
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QS A F +S + KKL FLKSLGV + DT+ + D +++E +FI R+++ +
Sbjct: 99 QSVPYFAVKFHLSVCEASKKLCGFLKSLGVHHVLDTTIAADFSILETQKDFIQRFRR--Q 156
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+ DE + PM +SACPGW+ YAE+ LG + P+I + KSPQQ +G+ +K +
Sbjct: 157 TQDEHA---FPMFASACPGWVQYAERVLGDSVTPHICTAKSPQQIMGSLVKGYFASSKNV 213
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD+I+H+ V PCYD+KLEA RED Y E +VD VLT+GEV+ +++
Sbjct: 214 SPDKIFHLMVAPCYDRKLEALRED-----------YYTELYNCRDVDCVLTSGEVMQIME 262
Query: 279 LKAVNFEALEESPLDKMLTN-----VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
+ ++ + + E PL+ + V EG SS GY VFRHAAK LF ++
Sbjct: 263 QQNISVKEVMEFPLENLFGETSCVFVRHEG------TSSDGYLAHVFRHAAKELFDMDVQ 316
Query: 334 GHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
+ +K ++N DF EV+LE +G+T+L+FA YGF+N+QN+V K++ K Y FVEV+ACP
Sbjct: 317 -EITYKALKNKDFLEVSLEKDGETVLRFAAAYGFRNIQNMVLKLRKGKFHYHFVEVLACP 375
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
GCLNG GQ + G+ + L+ +E +Y V + +P NP +++LY++WL+ S+K
Sbjct: 376 GGCLNGKGQAQTMDGKVERALLHEMEEVYT-RVPIQNPESNPHIQALYEDWLQGAESQKT 434
Query: 454 KKHVHTE 460
K+ +HT+
Sbjct: 435 KQTLHTK 441
>gi|354469091|ref|XP_003496964.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 1
[Cricetulus griseus]
Length = 457
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/419 (39%), Positives = 248/419 (59%), Gaps = 30/419 (7%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T E V L +QS +F +N K + +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKKCDTSKHRVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY + E E
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHRHSEEQRE- 164
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG ++P++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 165 ----LPMLTSACPGWVRYAERVLGRPVIPHLCTAKSPQQIMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA RE L+ T D VLT+GE+ +++ +
Sbjct: 221 FHVVVAPCYDKKLEALREGLSTTLNGARGT-----------DCVLTSGEIAQIMEQSDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
+++++ +D + +V +E ++ G SS G+ VFRHAAK LFG+ IE + ++ +R
Sbjct: 269 --SVKDTAVDTLFGDVKEEVAVWRHDGVSSDGHLAHVFRHAAKELFGEHIE-EINYRALR 325
Query: 343 NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
N DF EV LE G+ LL+FA YGF+N+QN++ K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 326 NKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACPRGCLNGRGQ 385
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G + + L++ +E IY + + P + V LY +WLE S K ++ +HT Y
Sbjct: 386 AQTEDGHTDRALLQQMEGIY-SGIPVRPPESSAHVEELYQQWLEGTESPKVQEVLHTTY 443
>gi|432119127|gb|ELK38347.1| Nuclear prelamin A recognition factor [Myotis davidii]
Length = 433
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 165/432 (38%), Positives = 254/432 (58%), Gaps = 29/432 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V + +Q+ +F N+NK K + +S+ PQS
Sbjct: 23 AKIFLSDCLACDSCVTAEEGVQVSQQNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPY 82
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FD + + D +++E+ EF+ RY+Q +E +
Sbjct: 83 FAAKFSLSVTDASRRLCGFLKSLGVHYVFDMTIAADFSILESQKEFVRRYRQHREEE--- 139
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG I P++ + KSPQQ +G+ +K + ++ PD++
Sbjct: 140 --PRLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKV 197
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA RED L S D VLT+GE++ L++ ++
Sbjct: 198 FHVIVAPCYDKKLEALREDVPTPLQSSRGA-----------DCVLTSGEIVQLMEQSDLS 246
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++ +D + +V +E SS GY +FRHAAK LF + + G L ++++RN
Sbjct: 247 ---PDDALVDTLFGDVKEEEVRRHEGASSDGYLAHIFRHAAKELFNEDV-GELTYRSLRN 302
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE +G+ LL+FA YGF+N+QN+V K+K K Y FVEV+AC GCL+G GQ
Sbjct: 303 KDFQEVTLERDGEVLLRFAAAYGFRNIQNVVLKLKRGKFPYHFVEVLACAGGCLSGRGQA 362
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + G++ + L++ +E IY + + P + V+ LY EWL S +A+ +HT Y
Sbjct: 363 QAEDGRADRALLRQMEGIY-AAIPVRPPETSAHVQELYQEWLGGADSPRAQAALHTAYQG 421
Query: 464 VVKSITAQLHNW 475
+S +++ W
Sbjct: 422 PGQSASSRDIKW 433
>gi|85861200|ref|NP_001034296.1| nuclear prelamin A recognition factor [Rattus norvegicus]
gi|123779921|sp|Q2YDU6.1|NARF_RAT RecName: Full=Nuclear prelamin A recognition factor; AltName:
Full=Iron-only hydrogenase-like protein 2; Short=IOP2
gi|82414782|gb|AAI10051.1| Nuclear prelamin A recognition factor [Rattus norvegicus]
Length = 456
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 165/418 (39%), Positives = 244/418 (58%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T E V L +QS +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTVEEGVQLSQQSAKDFFHVLNLNKRCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY Q E E
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE- 164
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG I+PY+ + KSPQQ +G+ +K + ++ P++I
Sbjct: 165 ----LPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQSLAPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+H+ V PCYDKKLEA RE L+ T D VLT+GE+ +++ +
Sbjct: 221 FHIVVAPCYDKKLEALREGLSPTLNGARGT-----------DCVLTSGEIAQIMEQSDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++++ +D + +V + SS G+ VFRHAAK LFG+ +E + ++ +RN
Sbjct: 269 --SVKDIAVDTLFGDVKEMAVRRHDGVSSDGHLAHVFRHAAKELFGEHVE-EITYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF EV LE G+ LL+FA YGF+N+QN++ K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 326 KDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIMKLKKGKFPYHFVEVLACPRGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G + + L++ +E IY + + P + V+ LY EWLE S K ++ +HT Y
Sbjct: 386 QTEDGHTDRALLQQMEGIY-SGIPVWPPESSTHVQELYQEWLEGTESPKVQEVLHTSY 442
>gi|384495843|gb|EIE86334.1| hypothetical protein RO3G_11045 [Rhizopus delemar RA 99-880]
Length = 437
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 272/448 (60%), Gaps = 61/448 (13%)
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINKGK--AVIISLSPQSRASLAEHFGISPLQVFK 117
L +GC+TSAE+V++ QSL+EF + + +IS+SPQSRASLA + ++P+QV K
Sbjct: 4 LKLNGCVTSAESVLISMQSLEEFYKILEQKTYTTTVISISPQSRASLAAKYQLTPIQVHK 63
Query: 118 KLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYK-----------------QSQES 159
+LT F K LG+ +FDT+ ++DL+L+E+ EF+ R+K Q +E
Sbjct: 64 RLTYFFKHILGIHHVFDTAFTQDLSLVESAREFMDRFKFYMANGGEEIEKVAQQQQQEEG 123
Query: 160 DDERSN----------SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209
RS +PML+S+CPGW+CYAEK G ILPYIS+ KSPQQ +G+ +K
Sbjct: 124 PSVRSRRGGGAKAKKIEGMPMLASSCPGWVCYAEKTHGE-ILPYISTTKSPQQMMGSLVK 182
Query: 210 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 269
+++ K ++IYHVTVMPCYDKKLEA+R DF Q+D +I +VD VLT
Sbjct: 183 NYLANKTNTSANQIYHVTVMPCYDKKLEASRPDF--QID-----------DIRDVDCVLT 229
Query: 270 TGEVLDLIQLKAVNFEALEESPLDKMLTNVD-----DEGHLYGVAGSSGGYA-ETVFRHA 323
T E+ ++Q + +F + E+P++ M V + ++GV GSS G + E + A
Sbjct: 230 TSEIDQMLQ--SHDFLQMPEAPVEDMFNKVGVDPETSQETVFGVPGSSSGGSLEYIMATA 287
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 382
A+ LFG + H+ K +N+D E +L +G+ LL+FA YGF+N+QN+VRK+K KC
Sbjct: 288 ARELFGASTD-HVTMKVGKNADVCEYSLMSDDGRPLLRFASAYGFRNIQNLVRKIKQGKC 346
Query: 383 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 442
Y +VEVMACP GC NGGGQI P + KE + +E+IY + P +N +++++Y+
Sbjct: 347 IYHYVEVMACPGGCANGGGQIIP-VNVNAKEWLNQVESIYRSAKGIW-PEENEMIKTIYN 404
Query: 443 EWLEQPGSEKAKKH--VHTEYHPVVKSI 468
EW+ G + AK+ +HT+YH V +S
Sbjct: 405 EWI---GDDMAKRQLLLHTQYHAVTQSF 429
>gi|410982054|ref|XP_003997377.1| PREDICTED: nuclear prelamin A recognition factor [Felis catus]
Length = 456
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 258/439 (58%), Gaps = 34/439 (7%)
Query: 37 DKPQVSTSSKQQAE-----PVKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG 89
D P ++ + ++ E KI L DCLAC C+T+ E + + +Q+ +F N+NK
Sbjct: 26 DVPSLALENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGLQVSQQNAKDFFRVLNLNKK 85
Query: 90 ------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLI 143
K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++
Sbjct: 86 CDTSQHKVLVVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSVL 145
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E+ EF+ R++Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ
Sbjct: 146 ESQKEFVRRFRQHSEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQI 200
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G+ +K + ++ PD+I+HV V PCYD+KLEA RED L
Sbjct: 201 MGSLVKDYFARRQNLSPDKIFHVIVAPCYDRKLEALREDVPTALHGSRGA---------- 250
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 323
D VLT+GEV+ +++ + A++++ +D + + +E SS GY VFRHA
Sbjct: 251 -DCVLTSGEVVQIMEQSDL---AVKDAAVDTLFGGLKEEEVRRHDGASSDGYLAHVFRHA 306
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
AK LF + + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K +
Sbjct: 307 AKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFP 365
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
Y FVEV+AC GCLNG GQ + + G++ K L++ +E Y +V + P + V+ LY E
Sbjct: 366 YHFVEVLACAGGCLNGRGQAQAEDGRADKALLRQMEGKY-ADVPVRPPETSAHVQELYRE 424
Query: 444 WLEQPGSEKAKKHVHTEYH 462
WL+ S + ++ +HT YH
Sbjct: 425 WLDGADSPRVREALHTVYH 443
>gi|242032965|ref|XP_002463877.1| hypothetical protein SORBIDRAFT_01g008100 [Sorghum bicolor]
gi|241917731|gb|EER90875.1| hypothetical protein SORBIDRAFT_01g008100 [Sorghum bicolor]
Length = 274
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/283 (56%), Positives = 196/283 (69%), Gaps = 45/283 (15%)
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPCYDKKLEA R+DF F +D G E+ EVDSVLTTGEVLDLIQ+ + F L
Sbjct: 1 MPCYDKKLEAVRDDFTFSVD---------GKEVTEVDSVLTTGEVLDLIQVASWFFFLLV 51
Query: 289 ESPLD------------------------------------KMLTNVDDEGHLYGVAGSS 312
+D LTNVD+EGHLYGV+G S
Sbjct: 52 LWFMDLKNKGGTYYDLHISAVQIYRFQDIRGIFIGQIVRPCAWLTNVDEEGHLYGVSGGS 111
Query: 313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 372
GGYAE VFR+AA ++ + IEG L+F+ +RNSDFRE+ LEVEGK +LKFALCYGF+NLQN
Sbjct: 112 GGYAEMVFRYAAHVIYKREIEGPLDFRILRNSDFREITLEVEGKPVLKFALCYGFRNLQN 171
Query: 373 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 432
IVRK+KM KC+Y F+EVMACPSGCLNGGGQ+KP GQS KELI+ LE++Y +++ + DPF
Sbjct: 172 IVRKIKMGKCEYHFIEVMACPSGCLNGGGQLKPVQGQSSKELIQQLESVYTQDISILDPF 231
Query: 433 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
NP+ + LYDEWL QPGSE AKK++HTEYHPVVKS+ +QL NW
Sbjct: 232 SNPIAKKLYDEWLGQPGSENAKKYLHTEYHPVVKSVASQLQNW 274
>gi|348502365|ref|XP_003438738.1| PREDICTED: nuclear prelamin A recognition factor-like [Oreochromis
niloticus]
Length = 462
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 257/425 (60%), Gaps = 28/425 (6%)
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS--------NINKGKAVIISLSP 98
Q E ++ L CL+C GC++ +T+ + +Q L+E + +K K ++ S+ P
Sbjct: 41 QVNEGSQLLLSACLSCDGCLSDEDTLKISQQGLEEVERVLALNKKCDASKHKVLVASVCP 100
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QS A FG+ + KL FLK +GV+ +FDT+ + +++E+ EFI RY++
Sbjct: 101 QSLPFFAVKFGVDITEAAHKLCGFLKHIGVQYVFDTTLAAGFSILESQKEFIQRYRRRHH 160
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+ +LPM +S+CPGWI Y+E+ LGS + P+I + +SPQQ +G +K + ++
Sbjct: 161 D-----SHALPMFTSSCPGWIRYSERVLGSLVTPHICTARSPQQIMGCLVKDYFSKQQKL 215
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
P+++YHV V PC+DKKLEA RE+F + LE +VD VLT+G++ L++
Sbjct: 216 SPEKLYHVVVAPCFDKKLEAVREEFYNSM-----------LETRDVDCVLTSGQIYYLME 264
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ E L+ PLD++L + D + S G+ E VF+HAAK LFG ++ + +
Sbjct: 265 QRKVSVEELDSVPLDQVLGDGGDVALVRHDGRGSEGFLEHVFKHAAKELFGVDVQ-EITY 323
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
KT+RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + YQ VEV++CP GCL+
Sbjct: 324 KTLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPYQLVEVLSCPGGCLS 383
Query: 399 GGGQIKPK--PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 456
G GQ + + G+ K L+ +E IY ++ + P NP + +LY EWLE S +A+K
Sbjct: 384 GRGQAESEGGAGRLDKALVNQMEEIY-SSLPVRLPEFNPALHTLYQEWLEGQDSSQARKL 442
Query: 457 VHTEY 461
+HTEY
Sbjct: 443 LHTEY 447
>gi|410928066|ref|XP_003977422.1| PREDICTED: nuclear prelamin A recognition factor-like [Takifugu
rubripes]
Length = 460
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 172/468 (36%), Positives = 265/468 (56%), Gaps = 35/468 (7%)
Query: 22 QNCVVSLKKATFKNPDKPQVSTSSK-----QQAEPVKISLKDCLACSGCITSAETVMLEK 76
+NC K+ KN D S K Q E ++ L CL+C GC++ E V + +
Sbjct: 14 ENCT---KQCNKKNSDDGAGSLQEKDEIGGQVNEGSQLLLSACLSCDGCLSDDENVKISQ 70
Query: 77 QSLDEFLS--------NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 128
QSL+E + +K K ++ S+ PQS A FG+ + KL +FLKS GV
Sbjct: 71 QSLEEVKHVLALNKKCDASKYKVLVASICPQSLPFFAVKFGMEVTEAAHKLCSFLKSAGV 130
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
+FDT+ + +++E EFI RY++ + +LPM +S+CPGWI Y+E+ LGS
Sbjct: 131 HYVFDTNLASGFSILECQKEFIQRYRRKH-----HDSHALPMFTSSCPGWIRYSERVLGS 185
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 248
+ P+I + +SPQQ +G +K C++ PD+IYH+ V PC+DKKLEA REDF L
Sbjct: 186 LVTPHICTARSPQQIMGCLVKDFFCKQQKLSPDKIYHMLVAPCFDKKLEAVREDFYNSL- 244
Query: 249 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 308
LE +VD VLT+GE+ L++ + V+ + L+ PLD +L + D +
Sbjct: 245 ----------LEARDVDCVLTSGEIFGLMEQRRVSVDELDSVPLDHVLGDSGDAVLMRHE 294
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 368
S G+ E VF++AAK LFG + + +K RN DF+EV LE +G+TLL+FA YGF+
Sbjct: 295 GRVSEGFLEHVFKYAAKELFGLDVH-EITYKNHRNRDFQEVTLERDGETLLQFAAVYGFR 353
Query: 369 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 428
N+Q +V +++ + YQ VEV++CP GC++G GQ + G+ K LI+ +E +Y ++ +
Sbjct: 354 NIQTLVHRMRKGRVPYQLVEVLSCPGGCISGRGQAETMAGRLDKNLIQQMEEVY-SSLPV 412
Query: 429 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 475
P P + +LY +WL+ S +A +HT+Y ++S T H W
Sbjct: 413 HLPEVTPALHTLYHDWLQGQDSPQANMLLHTQYKSQIQSQTQPPHMQW 460
>gi|431908622|gb|ELK12214.1| Nuclear prelamin A recognition factor [Pteropus alecto]
Length = 615
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 257/445 (57%), Gaps = 29/445 (6%)
Query: 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGK 90
P VS + KI L DCLAC C+T E V + +Q+ +F +N K K
Sbjct: 192 PDVSKGEFHKLADAKIFLSDCLACDSCVTEEEGVQVSQQNAKDFFRVLNLNKKCDTSKHK 251
Query: 91 AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
+ +S+ PQS A F +S ++L FLKSLGV +FD + + DL+++E EF+
Sbjct: 252 VLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDAAVAADLSILEGQKEFV 311
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R+ + E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K
Sbjct: 312 RRFLRHSEEE-----PALPMLTSACPGWVRYAERVLGQPLTPHLCTAKSPQQIMGSLVKD 366
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ ++ PD+I+HV V PCYDKKLEA REDF L S YR D VLT+
Sbjct: 367 YFARRQNLPPDKIFHVIVAPCYDKKLEALREDFSPALHS----YRG-------ADCVLTS 415
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
GEV+ +++ ++ ++ +D + ++ +E SS G+ +FRHAAK LF +
Sbjct: 416 GEVVQMMEQSDLSG---RDAAVDTLFGDLREEELRRHDGASSDGHLAHIFRHAAKELFNE 472
Query: 331 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
+ G + ++T+RN DF+EV LE +G+ LL+FA YGF+N+QN+V K+K K Y FVEV+
Sbjct: 473 DV-GEVTYRTLRNKDFQEVTLERDGEVLLRFAAAYGFRNIQNVVLKLKRGKFPYHFVEVL 531
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGS 450
AC GCLNG GQ + G++ + L++ +E IY ++ + P + V++LY EWL S
Sbjct: 532 ACAGGCLNGRGQALAEDGRADRALLRQMEGIYT-SIPVRAPEASASVQALYQEWLGGADS 590
Query: 451 EKAKKHVHTEYHPVVKSITAQLHNW 475
+A++ +H Y + +++ W
Sbjct: 591 PRAQEALHMAYQGPGRPASSRDIKW 615
>gi|50539744|ref|NP_001002342.1| nuclear prelamin A recognition factor [Danio rerio]
gi|82183313|sp|Q6DHP6.1|NARF_DANRE RecName: Full=Nuclear prelamin A recognition factor
gi|49902735|gb|AAH75921.1| Nuclear prelamin A recognition factor [Danio rerio]
Length = 465
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/417 (36%), Positives = 254/417 (60%), Gaps = 26/417 (6%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQSRASL 104
++ L CL+C GCI+ E + +Q+LDE + +K K +++S+ PQS
Sbjct: 50 QVLLSACLSCDGCISEDEGKRISQQNLDEINHVLALNKKCDTSKHKILVVSVCPQSVPFF 109
Query: 105 AEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
A F + +KL FLKS+GV +FDT+ + +++E+ EF+ RY++ +
Sbjct: 110 AVKFQLDVSAAAQKLCGFLKSVGVHYVFDTTIAASFSILESQREFVQRYRRKHHDAN--- 166
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
++PM +S+CPGWI YAE+ LGS + P+I + +SPQQ +G+ +K+ ++ P++++
Sbjct: 167 --AMPMFTSSCPGWIRYAERVLGSVVTPHICTARSPQQIMGSLVKNFFARQQKLTPEQVF 224
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
HV V PC+DKKLEA R++F + LE +VD VLT+GE+L L++ V
Sbjct: 225 HVVVAPCFDKKLEAVRDEFYNSI-----------LESRDVDCVLTSGEILHLMEQSKVTV 273
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
E ++ +PLD ++ + D G S G+ E +F+HAAK +FG ++ + +KT+RN
Sbjct: 274 EEVDSAPLDHVIGEISDSGLTRHDGRGSEGFLEHIFKHAAKEIFGLDVQD-IVYKTLRNR 332
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
DF+EVALE +G+TLL+FA YGF+N+Q +V +++ K YQ +EV++CP GCL+G GQ +
Sbjct: 333 DFQEVALERDGETLLQFAAVYGFRNIQTLVHRMRKGKVPYQLIEVLSCPGGCLSGRGQAE 392
Query: 405 PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G+ + L++ +E Y ++ + P NP V+ LY +WL+ S A++ +HT+Y
Sbjct: 393 GEGGRPDRTLVQQMEEHY-SSLPVRLPETNPEVQRLYQDWLDGHDSPHAQQSLHTQY 448
>gi|440895967|gb|ELR48019.1| Nuclear prelamin A recognition factor [Bos grunniens mutus]
Length = 454
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 161/419 (38%), Positives = 246/419 (58%), Gaps = 29/419 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLAC C+++ E + + +Q+ +F N+NK K + +SL PQS
Sbjct: 44 AKIFLSDCLACDSCVSAEEGIQVSQQNAKDFFQVLNLNKKCDTSEHKVLAVSLCPQSLPY 103
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ R++Q E +
Sbjct: 104 FAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRFRQHNEEE--- 160
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I
Sbjct: 161 --PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKI 218
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +ED + T D VLT+GEV +++ V
Sbjct: 219 FHVIVAPCYDKKLEALQEDVLTASRGSRGT-----------DCVLTSGEVAQMMEQSDV- 266
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ E+ LD + +V +E S GY +FRHAAK LF + + G + ++ +RN
Sbjct: 267 --SVREAALDTLFGDVKEEELRRHDGAGSDGYLAHIFRHAAKELFNEDV-GEVTYRALRN 323
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ LL+FA YGF+N+QN+V K+K K Y FVEV+AC GCLNG GQ
Sbjct: 324 KDFQEVTLEKSGEVLLRFAAAYGFRNIQNVVLKLKKGKFPYHFVEVLACAGGCLNGRGQA 383
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ G++ K L++ ++ IY ++ + P + V+ LY EWL+ S + ++ +HT Y
Sbjct: 384 QTADGRTDKALLQKMKGIY-ADIPVQLPEASTHVQELYQEWLDGTDSPRVQEALHTAYQ 441
>gi|426238301|ref|XP_004013093.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Ovis
aries]
Length = 456
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/419 (37%), Positives = 245/419 (58%), Gaps = 29/419 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+++ E + + +Q+ +F +N K + + +S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVSAEEGIQVSQQNAKDFFQVLNLNKKCDTSKHRVLAVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ R++Q E +
Sbjct: 106 FAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRFRQHNEEE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I
Sbjct: 163 --PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +ED + T D VLT+GE+ +++ V
Sbjct: 221 FHVIVAPCYDKKLEALQEDVLTASRGSRGT-----------DCVLTSGEIAQMMEQSDV- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ E+ LD + NV +E S GY +FRHAAK LF + + G + ++ +RN
Sbjct: 269 --SVREAALDTLFGNVKEEELRRHDGAGSDGYLAHIFRHAAKELFNEDV-GEVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ LL+FA YGF+N+QN+V K+K K Y FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKSGEVLLRFAAAYGFRNIQNVVLKLKKGKFPYHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ G++ K L++ ++ IY ++ + P + V+ LY EWL+ S + ++ +HT Y
Sbjct: 386 QTADGRTDKALLQKMKGIYA-DIPVQLPEASTHVQELYQEWLDGTDSPRVQEALHTAYQ 443
>gi|301782119|ref|XP_002926478.1| PREDICTED: nuclear prelamin A recognition factor-like [Ailuropoda
melanoleuca]
Length = 456
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 265/453 (58%), Gaps = 36/453 (7%)
Query: 37 DKPQVSTSSKQQAE-----PVKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG 89
D P ++ + ++ E KI L DCLAC C+T+ E + + +Q+ +F N+NK
Sbjct: 26 DVPSLAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGLQVSQQNAKDFFRVLNLNKK 85
Query: 90 ------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLI 143
K + +S+ PQS A F +S ++L FLK LGV +FDT+ + +++
Sbjct: 86 CDVSQHKVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKGLGVHYVFDTAIAAGFSIL 145
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E+ EF+ RY++ E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ
Sbjct: 146 ESQKEFVRRYQRHSEGE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQI 200
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G+ +K + ++ PD+I+HV V PCYDKKLEA REDF ++ G
Sbjct: 201 MGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDF------PTASHGSRG----- 249
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 323
D VLT+GE++ +++ + A++++ +D + + +E SS GY VFRHA
Sbjct: 250 ADCVLTSGEIIQIMEQSDL---AVKDAAVDTLFGGLKEEEVRRHDGASSDGYLAHVFRHA 306
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
AK LF + + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K +
Sbjct: 307 AKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFP 365
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
Y FVEV+AC GCLNG GQ + + G + K L++ +E IY ++ + P + V+ LY E
Sbjct: 366 YHFVEVLACAGGCLNGRGQAQTEDGHADKALLRQMEGIY-ADIPVRPPETSAHVQELYQE 424
Query: 444 WLEQPGSEKAKKHVHTEYH-PVVKSITAQLHNW 475
WL+ S + ++ +HT Y P +++++ + W
Sbjct: 425 WLDGVDSPRVQEALHTMYQGPGLRAVSRDI-KW 456
>gi|317419132|emb|CBN81169.1| Nuclear prelamin A recognition factor [Dicentrarchus labrax]
Length = 461
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/439 (36%), Positives = 256/439 (58%), Gaps = 28/439 (6%)
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSP 98
Q E ++ L CL+C GC+T E++ + +QSL E +++K K ++ S+ P
Sbjct: 41 QVHEGSQLLLSACLSCDGCLTEEESLKISQQSLQEVERVLALNKKCDVSKHKVLVASICP 100
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QS A FG+ + KL FLKSLGV+ +FDT+ + +++E+ EFI RY++
Sbjct: 101 QSLPFFAVKFGLDVTEAAHKLCGFLKSLGVQYVFDTTLAAGFSILESQKEFIQRYRRRHH 160
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
++PM +S+CPGWI Y+E+ LGS + P+I + +SPQQ +G +K + ++
Sbjct: 161 D-----THAMPMFTSSCPGWIRYSERVLGSLVTPHICTARSPQQIMGCLVKDYFSKQQKL 215
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
P+++YHV V PC+DKKLEA RE+F L LE +VD VLT+GE+ L++
Sbjct: 216 SPEKVYHVLVAPCFDKKLEAVREEFYNSL-----------LETRDVDCVLTSGEIYCLME 264
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+ V+ E + PLD +L D + S G+ E +F+HAAK LFG + + +
Sbjct: 265 QRKVSVEGPDSVPLDHVLGEAGDVALVRHEGRGSEGFLEHIFKHAAKELFGLDVH-EITY 323
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
K +RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + YQ VEV++CP GCL+
Sbjct: 324 KNLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPYQLVEVLSCPGGCLS 383
Query: 399 GGGQIKPKP-GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
G GQ + + G+ K L++ +E Y ++ + P NP + +LY +WL+ S +A +
Sbjct: 384 GRGQAESEAGGRVDKALVQQMEEAY-SSLPVRLPEVNPALHTLYQDWLQGQDSSQASALL 442
Query: 458 HTEYHPVVKSITAQLH-NW 475
HT+Y +S T H W
Sbjct: 443 HTQYRNQTQSHTQPPHMQW 461
>gi|297702110|ref|XP_002828031.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Pongo
abelii]
Length = 456
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 248/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E F L D VLT+GE+ +++ +
Sbjct: 221 FHVIVAPCYDKKLEALQESFPPALHGSRG-----------ADCVLTSGEIAQIMEQGDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ ++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 269 --SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ LL+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVLLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 386 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|403374972|gb|EJY87454.1| hypothetical protein OXYTRI_02709 [Oxytricha trifallax]
Length = 516
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/455 (38%), Positives = 261/455 (57%), Gaps = 62/455 (13%)
Query: 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEH 107
+ + K+SL DCLACSGC+TSAETV+++K S ++FL ++ VI+++SPQS SL+
Sbjct: 49 EGQTAKVSLSDCLACSGCVTSAETVLIQKHSTEQFLKLFDQQNFVIVAISPQSLGSLSLF 108
Query: 108 FGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS--------QE 158
+ S + FKKL T LG + + D S LTL A +EF ++ QS Q+
Sbjct: 109 YQQNSEVVTFKKLQTVFTKLGAQMVIDLSTFSLLTLQLAYDEFKNKFTQSEKFKKINNQK 168
Query: 159 SDDERSNS-----------SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
++E +S +P+L+S CPGW+CYAEK +G P++S+VKSPQQ G
Sbjct: 169 GEEEVKSSKKVFTKQSQEPGIPILASECPGWVCYAEKVVGDQAFPFMSTVKSPQQLCGCL 228
Query: 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 267
+KH++ K P+ + VTVMPCYDKKLEA R +F D ++ + LEI EVD+V
Sbjct: 229 LKHYVSLKNKLSPEHVKIVTVMPCYDKKLEAVRPNFTLSEDVGQD---NPDLEIKEVDTV 285
Query: 268 LTTGEVLDLIQLKAVNFEALEE-------------SP--------LDKMLTNVDDEGHLY 306
L T E+ DLI ++ +F ++E SP +++ + D L+
Sbjct: 286 LATHELTDLIGVERDSFNLIQEYQWQKDEDLAMKGSPSGWGFMELMEQFVEVSQDVQRLH 345
Query: 307 GVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI--RNSDFREVALEVEGKTLLKF 361
++ +S GY E VFR AAK +F + I E I +N D +E LE++GK +++F
Sbjct: 346 MISMYNMTSNGYLEYVFRRAAKEIFNQQISPQTELNYIQGKNKDLKECVLEIDGKVVMRF 405
Query: 362 ALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP-GQSPKELIKTLET 420
A YGF+N+QN++R +K KC+Y +VE+MACP GCLNGGGQIKP SPK+L+ LE
Sbjct: 406 AAAYGFRNIQNVIRNIKRGKCEYDYVEIMACPGGCLNGGGQIKPAQFSTSPKDLLDNLE- 464
Query: 421 IYLENV----MLADPFKNPLVRSL-------YDEW 444
I ++N+ ++ +P N ++ L Y +W
Sbjct: 465 IQMKNMNNKEIVPEPESNKVIHQLIQMMSITYQDW 499
>gi|345326494|ref|XP_001513248.2| PREDICTED: nuclear prelamin A recognition factor [Ornithorhynchus
anatinus]
Length = 457
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 174/460 (37%), Positives = 264/460 (57%), Gaps = 36/460 (7%)
Query: 17 FIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAE-----PVKISLKDCLACSGCITSAET 71
+ A SQ C+ + A K+ + S+S Q++E KI L DCLAC C+T E
Sbjct: 5 YRAGSQTCLRGISPAK-KSGCLFKESSSLAQKSEFHKLADAKIFLSDCLACDSCVTEEEG 63
Query: 72 VMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL 123
+ +Q+ EF +N K K + S+ PQS A F + ++L FL
Sbjct: 64 ARVFQQNQKEFFRVLNLNKKCDTSKHKVLAASICPQSLPYFAAKFNLCVTDTSRRLCGFL 123
Query: 124 KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 183
KSLGV +FDT+ + D +++E+ EF+ RY++ E+ +LPML+SACPGW+ YAE
Sbjct: 124 KSLGVHYVFDTTIAADFSILESQKEFVQRYRRR-----EQEEHALPMLTSACPGWVRYAE 178
Query: 184 KQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDF 243
+ L + + +I + KSPQQ +G+ +K + ++ PD+I+H+ V PCYDKKLEA REDF
Sbjct: 179 RVLANPVTLHICTAKSPQQIMGSLVKDYFARQKNLSPDKIFHIIVAPCYDKKLEALREDF 238
Query: 244 VFQL-DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE 302
L DSQ +VD VLT+GE++ +++ ++ LEE+ +D + E
Sbjct: 239 YTSLYDSQ------------DVDCVLTSGEIVQILEQSGLSLNELEEASVDTLF-GATTE 285
Query: 303 GHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKF 361
G + G+ S GY E VF+HAAK LF ++ + ++T++N DF+EV LE +G+ LL+F
Sbjct: 286 GEVVRHDGTRSDGYLEHVFKHAAKELFDMDVQ-EITYRTLKNKDFQEVTLERDGEVLLRF 344
Query: 362 ALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI 421
A GF+N+QN+V K+K + Y FVEV+ACP GCLNG GQ++ G+ L++ LE
Sbjct: 345 AAACGFRNIQNLVLKMKRGRFPYHFVEVLACPGGCLNGKGQMEAGSGKPDGALLRRLEEA 404
Query: 422 YLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Y + + P N V+ LY +WL+ S K + +HT Y
Sbjct: 405 Y-AGIPVRLPEANAHVQRLYRDWLQGTDSPKVQAALHTSY 443
>gi|296203462|ref|XP_002748914.1| PREDICTED: nuclear prelamin A recognition factor [Callithrix
jacchus]
Length = 635
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 159/419 (37%), Positives = 252/419 (60%), Gaps = 29/419 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 225 AKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 284
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S + ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 285 FAAKFNLSVTEASRRLCGFLKSLGVHYVFDTTIATDFSILESQKEFVRRYRQ--HSEEER 342
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 343 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQIMGSLVKDYFARQQNLSPEKI 399
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+H+ V PCYDKKLEA +E + L T D VLT+GE+ +++ ++
Sbjct: 400 FHIIVAPCYDKKLEALQEGALPALHGSRGT-----------DCVLTSGEIAQIMEQGDLS 448
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 449 ---VKDATIDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 504
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 505 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQA 564
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ GQ+ K L++ +E IY ++ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 565 QTPEGQADKALLRQMEGIY-ADIPVRRPGSSAHMQELYQEWLEGINSPKAQEVLHTTYQ 622
>gi|328773770|gb|EGF83807.1| hypothetical protein BATDEDRAFT_21296 [Batrachochytrium
dendrobatidis JAM81]
Length = 556
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 205/579 (35%), Positives = 289/579 (49%), Gaps = 140/579 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKN-PDKPQVST---------------SSKQQ 48
FS + + DL+DFI PSQ C+ K K D +ST ++ +
Sbjct: 3 FSSAIVLTDLNDFITPSQACI---KPTLIKTVADSKSISTVQSDSLGNYYEVTKEGTQTK 59
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSPQS 100
E ISL DCL+CSGC+TSAE +++ +QS E + I A + IS+ PQS
Sbjct: 60 LEAAAISLTDCLSCSGCVTSAEAILITQQSHKEIYNTIEANSALAKDQRAQICISICPQS 119
Query: 101 RASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
RASLA + ++ Q+ ++LT F K + + DT+ SRD L+E+ +EF+ RYK
Sbjct: 120 RASLAAKYNLTTRQIRRRLTWFFKDHFKMDHVLDTAFSRDFALLESAHEFVRRYKA---- 175
Query: 160 DDERSNSSL----PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
RS++SL PM++SACPGWICYAEK S ILP I + KSPQQ +G+ +K + +
Sbjct: 176 ---RSDTSLLQHMPMITSACPGWICYAEKT-HSAILPLIDTTKSPQQIMGSLVKDYYANQ 231
Query: 216 LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLD 275
L PD IYH+TVMPCYDKKLEA+R+DF + Y+ +VD V++TGEV
Sbjct: 232 LNVNPDRIYHITVMPCYDKKLEASRQDFY------NDIYKTR-----DVDCVISTGEVER 280
Query: 276 LIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG------ 329
+IQ + ++ ++E+ D + H SSGGY V R +AK LFG
Sbjct: 281 MIQEEGLDISTMQETEEDLIFG-----AHGRSEGSSSGGYLAYVMRFSAKALFGVDLTPL 335
Query: 330 KVIEGHLEFKTI--RNSDFREVALEVEG--KTLLKFALCYGFQNLQNIVRKVK------- 378
+ EG + RN D +V G + L+FA YGF+N+QN++RKVK
Sbjct: 336 DIQEGTNGITIVAGRNPDSTDVLFTPPGFDEPALRFAYSYGFRNIQNLIRKVKPGKPATT 395
Query: 379 ------------MRKCDYQFVEVMACPSGCLNGGGQIKPKP------------------- 407
+ Y +VEVMACPSGC+NGGGQ+KP+P
Sbjct: 396 LLNPRRVRSSTALASGKYNYVEVMACPSGCINGGGQLKPEPQLKSEKTQTFESKDSVNTI 455
Query: 408 ---------GQSP-------------------KELIKTLETIYL---ENVMLADPFKNPL 436
Q P K+ I E++Y E++ L P N +
Sbjct: 456 ELDLEIQSTAQPPLIESTASASSLTTDGTLSGKQWISRAESMYRSADESIEL--PETNAV 513
Query: 437 VRSLYDEWLEQPGSEKAKKHVHTEYH---PVVKSITAQL 472
++ LY EWL +EK++K +HT YH P+ S TA L
Sbjct: 514 IKRLYAEWLGGEDTEKSRKMLHTGYHSVEPLTSSTTAGL 552
>gi|189526438|ref|XP_001923641.1| PREDICTED: nuclear prelamin A recognition factor-like [Danio rerio]
Length = 465
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 253/417 (60%), Gaps = 26/417 (6%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQSRASL 104
++ L CL+C GCI+ E + +Q+LDE + +K K +++S+ PQS
Sbjct: 50 QVLLSACLSCDGCISEDEGKRISQQNLDEINHVLALNKKCDTSKHKILVVSVCPQSVPFF 109
Query: 105 AEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
A F + +KL FLKS+GV +FDT+ + +++E+ EF+ RY++ +
Sbjct: 110 AVKFQLDVSAAAQKLCGFLKSVGVHYVFDTTIAASFSILESQREFVQRYRRKHHDAN--- 166
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
++PM +S+CPGWI YAE+ LGS + P+I + +SPQQ +G+ +K+ ++ P++++
Sbjct: 167 --AMPMFTSSCPGWIRYAERVLGSVVTPHICTARSPQQIMGSLVKNFFARQQKLTPEQVF 224
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
HV V PC+DKKLEA R++F + LE +VD VLT+GE+L L++ V
Sbjct: 225 HVVVAPCFDKKLEAVRDEFYNSI-----------LESRDVDCVLTSGEILHLMEQSKVTV 273
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
E ++ +PLD ++ + D G S G+ E +F+HAAK +FG ++ + +KT+RN
Sbjct: 274 EEVDSAPLDHVIGEISDSGLTRHEGRGSEGFLEHIFKHAAKEIFGLDVQD-IVYKTLRNR 332
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
DF+EVALE +G+TLL+FA YGF+N+Q +V +++ K YQ +EV++CP GCL+G GQ +
Sbjct: 333 DFQEVALERDGETLLQFAAVYGFRNIQTLVHRMRKGKVPYQLIEVLSCPGGCLSGRGQAE 392
Query: 405 PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G+ + L++ +E Y ++ + P N V+ LY +WL+ S A++ +HT+Y
Sbjct: 393 GEGGRPDRTLVQQMEEHY-SSLPVRLPETNLEVQRLYQDWLDGHDSPHAQQSLHTQY 448
>gi|126309437|ref|XP_001368190.1| PREDICTED: nuclear prelamin A recognition factor [Monodelphis
domestica]
Length = 456
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/418 (38%), Positives = 249/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLA C+T+ E + + +Q+ EF N+NK K + +S+ PQS
Sbjct: 46 AKIFLSDCLASDTCVTAEEGIRVFQQNQKEFFRILNLNKKCDSSHHKVLAVSICPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S K+L FLKSLGV +FD++ + D +++E+ EF+ RY+Q + +
Sbjct: 106 FAAKFNLSITDASKRLCGFLKSLGVHYVFDSAIAADFSILESQKEFVYRYRQQNQKE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
SLPM +SACPGWI YAE+ LG+ + P+I + KSPQQ +G+ +K + ++ P +I
Sbjct: 163 --HSLPMFASACPGWIRYAERVLGNPVTPHICTAKSPQQIMGSLVKDYFARQQNLSPAKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+H+ V PCYDKKLEA REDF +Y +VD VLT+GE++ +++ K
Sbjct: 221 FHIIVAPCYDKKLEALREDFY------TASYNSH-----DVDCVLTSGEIIQIMEQKK-- 267
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
E ++E+ +D + + + + S GY E +F++AAK LF I+ + +K ++N
Sbjct: 268 -ELVKEAAVDNLFGEIKEGDIVQDGRTRSDGYLEHIFKYAAKELFDMDIK-EITYKALKN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+E++LE G+ +L+FA YGF+N+QN+V K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 326 KDFQEISLEKNGEIVLRFAAAYGFRNIQNMVLKLKKGKFPYHFVEVLACPGGCLNGKGQT 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G+ K L++ +E +Y E + + P N V+ LY EWL+ S K + +HT Y
Sbjct: 386 QTEDGKPDKALLRRMEEVYAE-IPVQLPETNTHVQRLYQEWLDGIDSPKVLEALHTTY 442
>gi|167518139|ref|XP_001743410.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778509|gb|EDQ92124.1| predicted protein [Monosiga brevicollis MX1]
Length = 476
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 184/502 (36%), Positives = 270/502 (53%), Gaps = 64/502 (12%)
Query: 9 LRIGDLSDFIAPSQNCVV----------SLKKATFK-NPDKPQVSTSS---KQQAEPVKI 54
LR+ DL+DFI PSQ C+ + K A + PD V + K + E KI
Sbjct: 4 LRLTDLNDFIGPSQACIKPVQVNRPEGDAAKGARIEIEPDGSYVQLAQDGKKTKLERAKI 63
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINK----GKAVIISLSPQSRASLAEHFGI 110
+L DCLACSGCITSAE+V+++ Q+ DE + + G V++ L+ Q AS+A +G+
Sbjct: 64 TLNDCLACSGCITSAESVLVQMQNHDELRRALREKATNGTTVVVMLAQQVYASMAAKYGL 123
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
S K++T+L+ LGV +++D S +R + L R Q + S ++ P+
Sbjct: 124 SSHAALFKISTYLRQLGVDAVYDVSIARSIAL---------RQVQQEYSHRRQTGGVFPI 174
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
LSSACPGWICYAEK GSYILP+IS+VKSPQQ +G+ +K I ++ G RPD+++ +MP
Sbjct: 175 LSSACPGWICYAEKSHGSYILPHISTVKSPQQIMGSMLKRIIPRQNGVRPDQVFVTAIMP 234
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C+DKKLEA+R DF Y DE L +VD V+ E+ ++ V+ + ES
Sbjct: 235 CFDKKLEASRSDF----------YSDE-LRTKDVDCVIAATELEIMLLEDDVDLSQVPES 283
Query: 291 PLDKMLTNVDDEGH-LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
PLD ++ D G L + +SGGY V AA F L + R DF+E
Sbjct: 284 PLDSLVPG--DTGEPLSHIGSTSGGYLHHVVERAADAPFAS-----LPLEAKRGVDFQEA 336
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK--- 406
+ + FAL YGF+++Q+++R++K + C Y +VEVMACP GC NGGGQ++P+
Sbjct: 337 SCQDAQGQTRTFALGYGFKSIQSVLRRIKRKNCSYDYVEVMACPRGCTNGGGQLRPEEVG 396
Query: 407 -------PGQSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPG-----SEKA 453
+ L+ E Y E + AD ++ V+++Y PG S +
Sbjct: 397 NSASAVSSQAARDALLTETERTYDEIRRIRAD--EDVRVQAVYAALQLTPGTNGLLSPEE 454
Query: 454 KKHVHTEYHPVVKSITAQLHNW 475
+ HT YH V S+ QL W
Sbjct: 455 QALFHTAYHKVETSMPPQLEAW 476
>gi|417401268|gb|JAA47525.1| Putative nuclear architecture related protein [Desmodus rotundus]
Length = 456
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 157/418 (37%), Positives = 244/418 (58%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V + +Q+ +F +N K K + +S+ PQS
Sbjct: 46 AKILLSDCLACDSCVTAEEGVQVSQQNARDFFRVLNLNKKCDTSKHKVLAVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A +S ++L FLKSLGV +FD + + D +++E+ EF+ RY Q E +
Sbjct: 106 FAAKLSLSVTDASRRLCGFLKSLGVHYVFDMAVAADFSILESQKEFVRRYHQHSEEE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG I P++ + KSPQQ +G+ +K + ++ PD+I
Sbjct: 163 --PMLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQVMGSLVKDYFARRQNLSPDQI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYD+KLEA RED L+ D VLT+GE++ +++ ++
Sbjct: 221 FHVIVAPCYDRKLEALREDVPTALNGSRAA-----------DCVLTSGEIIQMMEQSDLS 269
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++++ +D + + +E + SS G+ VFRHAAK LF + + G + ++T+RN
Sbjct: 270 ---VKDAAMDTLSGDRKEEEVRRHDSTSSDGHLAHVFRHAAKELFNEDV-GEVTYRTLRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DFREV LE G+ LL+FA YGF+NLQN+V K+K + + FVEV+AC GCL+G GQ
Sbjct: 326 KDFREVTLEKSGEVLLRFAAAYGFRNLQNVVLKLKKGRLPFHFVEVLACAGGCLSGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G++ + L++ +E IY + + P + V+ LY EWL S + ++ +HT Y
Sbjct: 386 QAEDGRADRALLRQMEGIYAA-IPVRAPETSAHVQELYQEWLGGADSPRVREALHTAY 442
>gi|395825752|ref|XP_003786085.1| PREDICTED: nuclear prelamin A recognition factor isoform 1
[Otolemur garnettii]
Length = 456
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 163/418 (38%), Positives = 249/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC CIT+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCITAEEGVQLSQQNAKDFFHVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY Q S+ ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQ--HSEKER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 V---LPMLTSACPGWVRYAERVLGRPVTPHLCTAKSPQQVMGSLVKDYFARQQSLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYD+KLEA RE F T R D VLT+GE+ Q+ A +
Sbjct: 221 FHVIVAPCYDRKLEALREGF-------SSTSRSS----LGADCVLTSGEI---AQIMAQS 266
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + + +E + SS G+ VFR+AAK LF + +E + ++ +RN
Sbjct: 267 DLSVQDATVDTLFGDSKEEMVMRHDGASSDGHLVHVFRYAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE +G+ LL+FA YGF+N+QN++ K+K Y FVEV+ACP GCLNG GQ
Sbjct: 326 KDFQEVTLEKDGEVLLRFAAAYGFRNIQNMILKLKKGTFPYHFVEVLACPGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + G K L++ +E IY ++ + P + V+ LY +WL+ S KA++ +HT +
Sbjct: 386 ETQDGHVDKALLRQMEGIY-SDIPVRPPETSANVQELYQQWLDGVDSPKAQETLHTTF 442
>gi|355784742|gb|EHH65593.1| hypothetical protein EGM_02377 [Macaca fascicularis]
Length = 437
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
+I L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 27 ARIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 86
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT + D +++E+ EF+ RY+Q S++ER
Sbjct: 87 FAAKFNVSVTDASRRLCGFLKSLGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEER 144
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 145 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 201
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E F L D VLT+GE+ ++ +
Sbjct: 202 FHVIVAPCYDKKLEALQEGFPPALHGSRGA-----------DCVLTSGEIAQIMDQGDL- 249
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 250 --SVKDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 306
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 307 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQA 366
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 367 QTPDGHADKALLRQMEGIY-ADIPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 423
>gi|426346275|ref|XP_004040805.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Gorilla
gorilla gorilla]
Length = 456
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 256/440 (58%), Gaps = 34/440 (7%)
Query: 35 NPDKPQVSTSSKQQAE-----PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN-- 87
+ D P ++ + ++ E KI L DCLAC C+T+ E V L +Q+ +F +N
Sbjct: 24 SADAPSLAQENGEKGEFHKLADAKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLN 83
Query: 88 ------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLT 141
K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +
Sbjct: 84 KKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS 143
Query: 142 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQ
Sbjct: 144 ILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQ 198
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
Q +G+ +K + ++ P++I+HV V PCYDKKLEA +E L
Sbjct: 199 QVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRG--------- 249
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 321
D VLT+GE+ +++ + ++ ++ +D + ++ ++ SS G+ +FR
Sbjct: 250 --ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFR 304
Query: 322 HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 381
HAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K
Sbjct: 305 HAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGK 363
Query: 382 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLY 441
+ FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + V+ LY
Sbjct: 364 FPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-ADIPVRRPESSAHVQELY 422
Query: 442 DEWLEQPGSEKAKKHVHTEY 461
EWLE S KA++ +HT Y
Sbjct: 423 QEWLEGINSPKAREVLHTTY 442
>gi|410337649|gb|JAA37771.1| nuclear prelamin A recognition factor [Pan troglodytes]
Length = 456
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E L D VLT+GE+ +++ +
Sbjct: 221 FHVIVAPCYDKKLEALQESLPPALHGSRG-----------ADCVLTSGEIAQIMEQGDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ ++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 269 --SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 386 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGVNSPKAREVLHTTY 442
>gi|326427053|gb|EGD72623.1| hypothetical protein PTSG_04358 [Salpingoeca sp. ATCC 50818]
Length = 528
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/413 (40%), Positives = 248/413 (60%), Gaps = 33/413 (7%)
Query: 6 SPTLRIGDLSDFIAPSQNCV--VSLKKATFK------NPDKPQVS---TSSKQQAEPVKI 54
S +++ DL+DFI P Q C+ V +++ K PD + +K + E KI
Sbjct: 34 SGRVQLSDLNDFITPGQACIKPVEVQREEGKPAKIAIEPDGSYMQLKEDGTKVKLEKAKI 93
Query: 55 SLKDCLACSGCITSAETVMLEKQS---LDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
+L DCLACSGC+TSAE+V++EKQ+ L+ + N +G V + +S QS ASLA F IS
Sbjct: 94 TLNDCLACSGCVTSAESVLIEKQNHKELENAVQNKKEGSLVCVCISQQSYASLAVRFDIS 153
Query: 112 PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
++ ++L TF KS+GV +FD + R + L E+ E ++R + E S +P+L
Sbjct: 154 AVEACQRLVTFFKSIGVDYVFDVTVGRSIALRESARELVSRVRNPME------GSPVPVL 207
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+S+CPGWICYAEK LP+IS VKSPQQ +GA +K+H +LG +P +++ V VMPC
Sbjct: 208 ASSCPGWICYAEK-THPEALPFISKVKSPQQIMGALVKYHFAPQLGVKPQDVFMVAVMPC 266
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
+DKKLEA+R+DF + YR +VD V+ + EV +++ + + +E
Sbjct: 267 FDKKLEASRQDFY------SDIYRTR-----DVDCVIVSHEVETMLEERKLRLNDVEMGQ 315
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 351
LD +L + + V SGGY V +AA+ L G V +E + R D+++ +
Sbjct: 316 LDSVLRPGHFDQVVGHVGSGSGGYLHHVLLYAARELHG-VEMSEVEMVSRRGEDYKDTQV 374
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
V+GK +LK A YGF+N+QNI+R+VK KC YQ+VE+MACP GC+NGGGQI+
Sbjct: 375 CVDGKPVLKMATAYGFRNIQNIIRRVKRNKCPYQYVEIMACPKGCVNGGGQIR 427
>gi|397475147|ref|XP_003809009.1| PREDICTED: nuclear prelamin A recognition factor [Pan paniscus]
gi|410212944|gb|JAA03691.1| nuclear prelamin A recognition factor [Pan troglodytes]
gi|410262860|gb|JAA19396.1| nuclear prelamin A recognition factor [Pan troglodytes]
gi|410290076|gb|JAA23638.1| nuclear prelamin A recognition factor [Pan troglodytes]
Length = 456
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E L D VLT+GE+ +++ +
Sbjct: 221 FHVIVAPCYDKKLEALQESLPPALHGSRG-----------ADCVLTSGEIAQIMEQGDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ ++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 269 --SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 386 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|380811686|gb|AFE77718.1| nuclear prelamin A recognition factor isoform a [Macaca mulatta]
gi|383417473|gb|AFH31950.1| nuclear prelamin A recognition factor isoform a [Macaca mulatta]
gi|384942408|gb|AFI34809.1| nuclear prelamin A recognition factor isoform a [Macaca mulatta]
Length = 456
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
+I L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 ARIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E F L D VLT+GE+ ++ +
Sbjct: 221 FHVIVAPCYDKKLEALQEGFPPALHGSRG-----------ADCVLTSGEIAQIMDQGDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 269 --SVKDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 386 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 442
>gi|355569052|gb|EHH25333.1| hypothetical protein EGK_09133 [Macaca mulatta]
Length = 429
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
+I L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 19 ARIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 78
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT + D +++E+ EF+ RY+Q S++ER
Sbjct: 79 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEER 136
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 137 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 193
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E F L D VLT+GE+ ++ +
Sbjct: 194 FHVIVAPCYDKKLEALQEGFPPALHGSRGA-----------DCVLTSGEIAQIMDQGDL- 241
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 242 --SVKDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 298
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 299 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQA 358
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 359 QTPDGHADKALLRQMEGIY-ADIPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 415
>gi|119610203|gb|EAW89797.1| hCG30379, isoform CRA_g [Homo sapiens]
Length = 455
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 45 AKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 104
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 105 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 163 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 219
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E L D VLT+GE+ +++ +
Sbjct: 220 FHVIVAPCYDKKLEALQESLPPALHGSRG-----------ADCVLTSGEIAQIMEQGDL- 267
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ ++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 268 --SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 324
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ
Sbjct: 325 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQA 384
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 385 QTPDGHADKALLRQMEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 441
>gi|6912524|ref|NP_036468.1| nuclear prelamin A recognition factor isoform a [Homo sapiens]
gi|74735021|sp|Q9UHQ1.1|NARF_HUMAN RecName: Full=Nuclear prelamin A recognition factor; AltName:
Full=Iron-only hydrogenase-like protein 2; Short=IOP2
gi|5777952|gb|AAD51446.1|AF128406_1 nuclear prelamin A recognition factor [Homo sapiens]
gi|7021904|dbj|BAA91432.1| unnamed protein product [Homo sapiens]
gi|119610204|gb|EAW89798.1| hCG30379, isoform CRA_h [Homo sapiens]
Length = 456
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 247/418 (59%), Gaps = 29/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E L D VLT+GE+ +++ +
Sbjct: 221 FHVIVAPCYDKKLEALQESLPPALHGSRG-----------ADCVLTSGEIAQIMEQGDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
++ ++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 269 --SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQA 385
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 386 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|326930695|ref|XP_003211478.1| PREDICTED: LOW QUALITY PROTEIN: nuclear prelamin A recognition
factor-like [Meleagris gallopavo]
Length = 481
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/432 (38%), Positives = 247/432 (57%), Gaps = 45/432 (10%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASL 104
KI L DCLAC C+TS E + +Q+ EF +N K K + +S+ PQS
Sbjct: 86 KILLSDCLACDSCMTSEEGARVFQQNQKEFFRILNLNKKCDTSKHKVLAVSICPQSLPYF 145
Query: 105 AEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY-KQSQESDDER 163
A F +S K+L FLKSLGV +FDT+ + D +++E+ EF+ RY ++SQE
Sbjct: 146 AAKFSLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILESQREFVQRYQRRSQEE---- 201
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPM +SACPGWI YAE+ L + + P+I + KSPQQ +G+ +K + ++ P++I
Sbjct: 202 --HALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQIMGSLVKGYFARQQNLSPEKI 259
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA REDF L + +E VD VLT+GE++ +++ K V+
Sbjct: 260 FHVVVAPCYDKKLEALREDFYTALYNSQE-----------VDCVLTSGEIVQIMEQKNVS 308
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ + E +D S +HAAK LFG + + +K ++N
Sbjct: 309 MKDVTEVAVD-----------------SXXXXXXXXXKHAAKELFGVDVRS-ITYKALKN 350
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE +G+T+L+FA YGF+N+QN+V K+K K Y FVEV+ACP GCLNG GQ
Sbjct: 351 KDFQEVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFLYHFVEVLACPGGCLNGKGQT 410
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + G+ K L+ +E +Y + + P N V+ +Y +WLE S K ++ +HT+Y
Sbjct: 411 QTEDGKPDKALLSQMEDVYAA-IPVRLPEANVYVQKMYQDWLEGMDSRKVQETLHTKYSA 469
Query: 464 VVKSITAQLHNW 475
V ++ + W
Sbjct: 470 VNQTASNLDIKW 481
>gi|449283118|gb|EMC89821.1| Nuclear prelamin A recognition factor, partial [Columba livia]
Length = 487
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/468 (36%), Positives = 256/468 (54%), Gaps = 62/468 (13%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+TS E + +Q+ E +N K K + +S+ PQS
Sbjct: 38 AKILLSDCLACDNCMTSEEGARVFQQNQKELFRVLNLNKKCDTSKHKVLAVSICPQSLPY 97
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S K+L FLKSLGV +FDT+ + D +++E+ EF+ RY++ + +
Sbjct: 98 FAAKFNLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILESQREFVQRYQRRNQEE--- 154
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPM +SACPGWI YAE+ L + + P+I + KSPQQ +G+ +K + ++ PD+I
Sbjct: 155 --HALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQIMGSLVKGYFARQQNLSPDKI 212
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI-QLKAV 282
+HV V PCYDKKLEA REDF L + + EVD VLT+GE ++ +LKA+
Sbjct: 213 FHVIVAPCYDKKLEALREDFYTALYNSQ-----------EVDCVLTSGERCEVWGKLKAL 261
Query: 283 NFEA-----------------------------------LEESPLDKMLTNVDDEGHLYG 307
+F A + E +D + + + +
Sbjct: 262 DFRAGSVGLLHGWRELTLTRVGECEIVHIMEQKNVSMKDVTEVAVDSLFDGIKEGDVVRH 321
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 367
S GY E +F+HAAK LFG ++ + +K ++N DF+EV LE +G+T+L+FA YGF
Sbjct: 322 DGKRSDGYLEHIFKHAAKELFGMDVK-EITYKALKNKDFQEVTLEKDGETVLRFAAAYGF 380
Query: 368 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 427
+N+QN+V K+K K Y FVEV+ACP GCLNG GQ + + G+ K L+ +E +Y +
Sbjct: 381 RNIQNMVLKLKKGKFLYHFVEVLACPGGCLNGKGQAQTEDGKPDKALLNQMEEMYAA-IP 439
Query: 428 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
+ P N V +Y +WLE S+K ++ +HT+Y V ++ + W
Sbjct: 440 VRLPETNVHVEKMYQDWLEGMDSKKVQETLHTKYSAVNQTASNLDIKW 487
>gi|327264677|ref|XP_003217138.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 2
[Anolis carolinensis]
Length = 411
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 233/388 (60%), Gaps = 23/388 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K K + +S+ PQS A F + + K+L FLK LGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLAVSICPQSLPYFAAKFNLCVTEAAKRLCGFLKCLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYK-QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
+ EF+ RY+ Q+QE +LPM +SACPGWI YAE+ L S + P+I + KSPQQ
Sbjct: 99 SQKEFVQRYRNQNQEE------HALPMFASACPGWIQYAERVLSSLVTPHICTAKSPQQI 152
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G+ IK + ++ D+I+H+ V PCYDKKLEA RED L Y + +
Sbjct: 153 MGSLIKGYFARQQNLSSDKIFHIIVAPCYDKKLEALREDVYAPL------YHSQ-----D 201
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 323
VD VLT+GEV +++ + V+ + E P D + +++ + S GY E +F+HA
Sbjct: 202 VDCVLTSGEVFQVMEQRKVSLKEAAEVPFDTLFGGINESDLMRHDGRRSDGYLEHIFKHA 261
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
AK LF ++ L +K ++N DF+EV LE G+T+L+FA YGF+N+QN+V K+K KC
Sbjct: 262 AKELFDTEVK-ELTYKVLKNKDFQEVTLEKGGETVLRFAAAYGFRNIQNMVLKLKKGKCS 320
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
Y FVEV+ACP GCLNG GQ + + G+ K L+K +E +Y V + P N V+ LY E
Sbjct: 321 YHFVEVLACPGGCLNGKGQAQTEDGKPDKALLKQMEEVYAA-VPVQLPETNGHVQKLYQE 379
Query: 444 WLEQPGSEKAKKHVHTEY---HPVVKSI 468
WLE S K ++ +HT+Y PV S+
Sbjct: 380 WLEGMDSVKVQQSLHTKYSSEKPVANSL 407
>gi|403280732|ref|XP_003931865.1| PREDICTED: nuclear prelamin A recognition factor [Saimiri
boliviensis boliviensis]
Length = 471
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/419 (38%), Positives = 253/419 (60%), Gaps = 31/419 (7%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 61 AKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 120
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S + ++L LKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 121 FAAKFNLSVTEASRRLCGSLKSLGVHFVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 178
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 179 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 235
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E + L T D VLT+GE+ +++ +
Sbjct: 236 FHVIVAPCYDKKLEALQEGSLSALHGSRGT-----------DCVLTSGEIAQIMEQGDL- 283
Query: 284 FEALEESPLDKMLTNV-DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
+++++ +D + ++ +D+ + AGS G A +FRHAAK LF + +E + ++ +R
Sbjct: 284 --SVKDAAIDTLFGDLREDKVTRHDGAGSDGHLAH-IFRHAAKELFNEDVE-EVTYRALR 339
Query: 343 NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
N DF+EV LE +G+ +L+FA GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 340 NKDFQEVTLEKDGEVVLRFAAACGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQ 399
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 400 AQTPEGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 457
>gi|395536807|ref|XP_003770403.1| PREDICTED: nuclear prelamin A recognition factor [Sarcophilus
harrisii]
Length = 438
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/438 (37%), Positives = 249/438 (56%), Gaps = 52/438 (11%)
Query: 37 DKPQVSTSSKQQAE-----PVKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG 89
D P ++ ++++E KI L DCLA C+T E + + +Q+ EF N+NK
Sbjct: 26 DIPNFNSEHEEKSEFHKLADAKIFLSDCLASDSCVTVEEGIKVFQQNQKEFFRILNLNKK 85
Query: 90 ------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLI 143
K + +S+ PQS A F +S K+L FLKSLGV +FD++ + D +++
Sbjct: 86 CDTSVHKVLAVSICPQSLPYFAAKFNLSVTDASKRLCGFLKSLGVHYVFDSTIAVDFSIL 145
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E+ EF+ RY+Q ++ + SLPM +SACPGWI YAE+ LG+ ++P+I + KSPQQ
Sbjct: 146 ESQKEFVYRYRQQKQEE-----HSLPMFASACPGWIQYAERVLGNPVIPHICTAKSPQQI 200
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G+ +K + ++ PD+I+H+ V PCYDKKLEA REDF +Y +
Sbjct: 201 MGSLVKDYFARQQNLSPDKIFHIIVAPCYDKKLEALREDFY------TASYNSH-----D 249
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 323
VD VLT+G++ M + +E + S GY E +F++A
Sbjct: 250 VDCVLTSGKM---------------------MFGEIKEEDTVNDGTTRSDGYLEHIFKYA 288
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
AK LF I+ + +K ++N DF+EV LE G+ +L+FA YGF+N+QN+V K+K K
Sbjct: 289 AKELFDMNIK-EITYKALKNKDFQEVTLEKNGEIMLRFAAAYGFRNIQNMVLKLKKGKFP 347
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
Y FVEV+ACP GCLNG GQ + + G+ K L++ +E +Y E + + P N V+ LY E
Sbjct: 348 YHFVEVLACPGGCLNGKGQTQTEDGKPDKALLRRMEEVYAE-IPVQLPETNTHVQKLYQE 406
Query: 444 WLEQPGSEKAKKHVHTEY 461
WL+ S K ++ +HT Y
Sbjct: 407 WLDGMDSPKVQEALHTTY 424
>gi|348558154|ref|XP_003464883.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 1
[Cavia porcellus]
Length = 455
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 243/418 (58%), Gaps = 30/418 (7%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E L +Q+ + +N K K +++S+ PQS
Sbjct: 46 AKILLSDCLACDSCVTAEEGAQLSQQNAKDLFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A +S ++L FLKSLGV +FD + + D +++E+ EF+ RY Q SD++R
Sbjct: 106 FAAKLNLSVTDASRRLCGFLKSLGVHYVFDMAIAADFSILESQREFVRRYHQ--HSDEQR 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 A---LPMLTSACPGWVRYAERVLGRPVTPHLCTAKSPQQVMGSLVKDYFAKQQNLPPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYD+KLEA +E F T D VLT+GEV ++ +
Sbjct: 221 FHVVVAPCYDRKLEALQEGFSTAAPGARGT-----------DCVLTSGEVAQIMDQSGL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + + + + AGS G A VFRHAAK LF + +E + + +RN
Sbjct: 269 --SVKDAAVDTLFGDEEVAMRRHDGAGSDGHLAH-VFRHAAKELFNERVE-EITYCPLRN 324
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ LL+FA YGF+N+QN+V K++ K Y FVEV+ACP GCLNG GQ
Sbjct: 325 KDFQEVTLEKNGEVLLRFAAAYGFRNVQNLVLKLRKGKFPYHFVEVLACPGGCLNGRGQA 384
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K G K L++ +E IY ++ + P + V+ LY EWLE S +A + +HT +
Sbjct: 385 QTKDGHMDKSLLRQMEGIY-ADIPVQPPESSTHVQELYQEWLEGTDSLRAHETLHTTF 441
>gi|242032963|ref|XP_002463876.1| hypothetical protein SORBIDRAFT_01g008090 [Sorghum bicolor]
gi|241917730|gb|EER90874.1| hypothetical protein SORBIDRAFT_01g008090 [Sorghum bicolor]
Length = 222
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 144/220 (65%), Positives = 174/220 (79%), Gaps = 6/220 (2%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKAT-----FKNPDKPQVSTSSKQQAEPVKISL 56
S +FSP L+ DL+DFIAPSQ+C++SL K T +N K + + SSK E VKISL
Sbjct: 3 SSRFSPVLQASDLNDFIAPSQDCIISLNKNTSSSRRLQNKQK-ETTVSSKPPEEAVKISL 61
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
KDCLACSGCITSAETVMLEKQSL +F+ IN KAVI+S+SPQSRASLA FG+S QV
Sbjct: 62 KDCLACSGCITSAETVMLEKQSLGDFIDRINSDKAVIVSVSPQSRASLAAFFGLSQSQVL 121
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
+KLT LKS+GVK++FDTS SRDL+LIEACNEF++RY+++Q S + + ++LPM+SSACP
Sbjct: 122 RKLTALLKSIGVKAVFDTSSSRDLSLIEACNEFVSRYEKNQSSSGKEAGANLPMISSACP 181
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
GWICYAEK LGSYILPYISSVKSPQQ IGA IKH + L
Sbjct: 182 GWICYAEKTLGSYILPYISSVKSPQQAIGAAIKHMWLRNL 221
>gi|109119241|ref|XP_001113522.1| PREDICTED: nuclear prelamin A recognition factor isoform 3 [Macaca
mulatta]
Length = 457
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 162/418 (38%), Positives = 245/418 (58%), Gaps = 28/418 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
+I L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 ARIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E F L D VLT+GE+ ++ ++
Sbjct: 221 FHVIVAPCYDKKLEALQEGFPPALHGSRG-----------ADCVLTSGEIAQIMDQGDLS 269
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ S L K +D+ + A SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 270 VKDAA-STLCKFGDLKEDKVTRHDGA-SSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 326
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y FVEV+AC GCLNG GQ
Sbjct: 327 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQA 386
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 387 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 443
>gi|47215781|emb|CAG02577.1| unnamed protein product [Tetraodon nigroviridis]
Length = 440
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/452 (36%), Positives = 248/452 (54%), Gaps = 55/452 (12%)
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS--------NINKGKAVIISLSP 98
Q E ++ L CL+C GC++ E V + +QSL+E + +K K ++ S+ P
Sbjct: 2 QATESSQLLLSACLSCDGCVSEDENVKISQQSLEEVKRVLALNKKCDASKHKVLVASICP 61
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QS A FG+ + KL FLK LGV +FDTS + +++E EF+ RY++
Sbjct: 62 QSLPFFAVKFGVQVTEAAHKLCGFLKGLGVHYVFDTSLAAGFSILECQKEFVQRYRRKHH 121
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHIC-QKLG 217
+ +LPM +S+CPGWI YAE+ LG+ + P+I +SPQQ +G +K Q+
Sbjct: 122 D-----SQALPMFTSSCPGWIRYAERVLGTLVTPHICIARSPQQIMGCLVKDFFSKQQQK 176
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P++IYH+ V PC+DKKLEA RE+F L LE +VD VLT+GE+ DL+
Sbjct: 177 LSPEKIYHMLVAPCFDKKLEAVREEFYNSL-----------LETRDVDCVLTSGEIYDLM 225
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ V + L+ PLD +L D + S G+ E VF+HAAK LFG+ + +
Sbjct: 226 GQRKVAVDKLDSVPLDHVLGESGDAALMRHEGRGSEGFLEHVFKHAAKELFGQDVH-EIT 284
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP---- 393
+K +RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + YQ VEV++CP
Sbjct: 285 YKNLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPYQLVEVLSCPGGKA 344
Query: 394 ------------------------SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 429
SGCL+G GQ + + G+ K LI+ +E +Y ++ +
Sbjct: 345 ATCFRRRSKWNFRLLLRDTGLRFHSGCLSGRGQAESEEGRLDKNLIQQMEEVY-SSLPVR 403
Query: 430 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P NP + LY +WL+ S +A +HT+Y
Sbjct: 404 LPEVNPALHVLYHDWLQGQDSPQASILLHTQY 435
>gi|281354394|gb|EFB29978.1| hypothetical protein PANDA_016122 [Ailuropoda melanoleuca]
Length = 463
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/461 (35%), Positives = 259/461 (56%), Gaps = 46/461 (9%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRASL 104
KI L DCLAC C+T+ E + + +Q+ +F N+NK K + +S+ PQS
Sbjct: 11 KIFLSDCLACDSCVTAEEGLQVSQQNAKDFFRVLNLNKKCDVSQHKVLAVSVCPQSLPYF 70
Query: 105 AEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
A F +S ++L FLK LGV +FDT+ + +++E+ EF+ RY++ E +
Sbjct: 71 AAKFRLSVTDASRRLCGFLKGLGVHYVFDTAIAAGFSILESQKEFVRRYQRHSEGE---- 126
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
+LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I+
Sbjct: 127 -PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKIF 185
Query: 225 HVTVMPCYDKKLEAAREDF-VFQLDSQEETYRDEGLEIPEVD-SVLTTGEVL-------- 274
HV V PCYDKKLEA REDF S+ + +P+V + GE++
Sbjct: 186 HVIVAPCYDKKLEALREDFPTASHGSRGADCVLTSVMVPKVTLTEAPVGEIILEAAPEEA 245
Query: 275 -------------------DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGY 315
++IQ+ + A++++ +D + + +E SS GY
Sbjct: 246 AGMGLCGSFHGALRLLFVGEIIQIMEQSDLAVKDAAVDTLFGGLKEEEVRRHDGASSDGY 305
Query: 316 AETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVR 375
VFRHAAK LF + + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V
Sbjct: 306 LAHVFRHAAKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVL 364
Query: 376 KVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNP 435
K+K + Y FVEV+AC GCLNG GQ + + G + K L++ +E IY ++ + P +
Sbjct: 365 KLKKGRFPYHFVEVLACAGGCLNGRGQAQTEDGHADKALLRQMEGIY-ADIPVRPPETSA 423
Query: 436 LVRSLYDEWLEQPGSEKAKKHVHTEYH-PVVKSITAQLHNW 475
V+ LY EWL+ S + ++ +HT Y P +++++ + W
Sbjct: 424 HVQELYQEWLDGVDSPRVQEALHTMYQGPGLRAVSRDI-KW 463
>gi|335297199|ref|XP_003131175.2| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Sus
scrofa]
Length = 455
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/422 (36%), Positives = 246/422 (58%), Gaps = 38/422 (9%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLAC C+++ E V + +Q+ +FL N+NK + + +S+ PQS
Sbjct: 46 AKIFLSDCLACDSCVSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FD + + D +++E+ EF+ R+ Q E +
Sbjct: 106 FAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPML+SACPGW+ YAE+ LG + P++ + +SPQQ +G+ +K + ++ D I
Sbjct: 163 --PALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYD+KLEA +ED + + +R D VLT+GE+ +++ ++
Sbjct: 221 FHVIVAPCYDRKLEALQED----VPTASPGFRG-------TDCVLTSGEIAQMMEQSDLS 269
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ ++ LD + +V +E + A S G A +FRHAAK LF + + G L ++ +RN
Sbjct: 270 ---VRDAALDTLFGDVREEVRRHDGASSDGCLAH-IFRHAAKELFDEDV-GELTYRALRN 324
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE GK LL+FA YGF+N+QN+V K+K + Y FVEV+AC GCLNG GQ
Sbjct: 325 RDFQEVTLEKSGKVLLRFAAAYGFRNIQNVVLKLKRGRFPYHFVEVLACAGGCLNGRGQA 384
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNP----LVRSLYDEWLEQPGSEKAKKHVHT 459
+ + G++ + L++ + ++ A P + P V+ LY EWL+ + +A+ +HT
Sbjct: 385 QTEDGRADRALLQRMRGVH-----AAGPGRTPETSAHVQDLYREWLDGADAPRARGTLHT 439
Query: 460 EY 461
+
Sbjct: 440 AH 441
>gi|14165461|ref|NP_114174.1| nuclear prelamin A recognition factor isoform b [Homo sapiens]
gi|12653339|gb|AAH00438.1| NARF protein [Homo sapiens]
gi|312152386|gb|ADQ32705.1| nuclear prelamin A recognition factor [synthetic construct]
Length = 502
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 163/452 (36%), Positives = 252/452 (55%), Gaps = 51/452 (11%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAARE------------DFVFQ------------LDSQEETYRDEGL 259
+HV V PCYDKKLEA +E D V + + E E L
Sbjct: 221 FHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESL 280
Query: 260 E----------IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 309
E I +DS L G ++ Q+ ++ ++ +D + ++ ++
Sbjct: 281 EPGRQRLQRDKIAPLDSSLGGGG--EIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDG 338
Query: 310 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQN 369
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N
Sbjct: 339 ASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRN 397
Query: 370 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 429
+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY ++ +
Sbjct: 398 IQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVR 456
Query: 430 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + V+ LY EWLE S KA++ +HT Y
Sbjct: 457 RPESSAHVQELYQEWLEGINSPKAREVLHTTY 488
>gi|345806726|ref|XP_003435490.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Canis
lupus familiaris]
Length = 408
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/372 (39%), Positives = 228/372 (61%), Gaps = 21/372 (5%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
K + +S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E+ EF
Sbjct: 44 KVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEF 103
Query: 150 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209
+ RY+Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K
Sbjct: 104 VRRYQQHSEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVK 158
Query: 210 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 269
+ ++ PD+I+HV V PCYDKKLEA REDF + +R D VLT
Sbjct: 159 DYFARQQNLSPDKIFHVIVAPCYDKKLEALREDF----PTAPHGFRS-------ADCVLT 207
Query: 270 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 329
+GE+ +++ + ++++ +D + + +E SS GY VFRHAAK LF
Sbjct: 208 SGEIAQIMEQSDLT---VKDAAVDTVFGGLKEEEVRRHDGASSDGYLAHVFRHAAKQLFD 264
Query: 330 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
+ + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K + Y FVEV
Sbjct: 265 EDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFPYHFVEV 323
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 449
+AC GCLNG GQ + + G++ K L++ +E IY ++ + P + V+ LY EWL+
Sbjct: 324 LACAGGCLNGRGQAQTEDGRADKALLRQMEGIYA-DIPVRPPESSAHVQELYQEWLDGAD 382
Query: 450 SEKAKKHVHTEY 461
S +A++ +HT+Y
Sbjct: 383 SPRAQEALHTKY 394
>gi|351706449|gb|EHB09368.1| Nuclear prelamin A recognition factor [Heterocephalus glaber]
Length = 506
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 251/475 (52%), Gaps = 70/475 (14%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINK------GKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E L +Q+ +F N+NK K +++S+ PQS
Sbjct: 51 AKIFLSDCLACDSCVTAEEGAQLSQQNAKDFFRVLNLNKKCDTSEHKVLVVSVCPQSLPY 110
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS------- 156
A +S ++L FLKSLGV +FD + + D +++E+ EF+ RY Q
Sbjct: 111 FAAKLNLSVTDASRRLCGFLKSLGVHYVFDMAIAADFSILESQKEFVRRYHQHSDEQRAL 170
Query: 157 ------------------------------------QESDDERSNSSLPMLSSACPGWIC 180
Q SD++R+ LPML+SACPGW+
Sbjct: 171 PMLTSACPGVHYVFDMAIAADFSILESQKEFVRRYHQHSDEQRA---LPMLTSACPGWVR 227
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAE+ LG + P++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +
Sbjct: 228 YAERVLGHPVTPHLCTAKSPQQVMGSLVKDYFAKQQNLPPEKIFHVVVAPCYDKKLEALQ 287
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
E F L + T D VLT+GE+ +++ ++ ++++ +D + +
Sbjct: 288 EGFSTALPGAQGT-----------DCVLTSGEITQMMEQSDLS---VKDAAVDTLFRDAK 333
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 360
+ S G+ VFRHAAK LF + +E + + +RN DF+EV LE G+ LL+
Sbjct: 334 EAVVRRHDGTGSDGHLAHVFRHAAKELFNEHVE-EITYCALRNKDFQEVTLEKNGEVLLR 392
Query: 361 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 420
FA YGF+N+QN+V K++ K Y FVEV+ACP GCLNG GQ + + G + K +++ +E
Sbjct: 393 FAAAYGFRNVQNLVLKLRKGKFPYHFVEVLACPGGCLNGRGQAQTEHGHTDKFVLRQMEG 452
Query: 421 IYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
IY ++ + P + V+ LY EWLE S KA++ +HT Y + A W
Sbjct: 453 IY-ADIPVQPPESSAHVQELYQEWLEGTDSLKAQEALHTSYQSPERCTAALDMKW 506
>gi|354469093|ref|XP_003496965.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 2
[Cricetulus griseus]
Length = 409
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 229/378 (60%), Gaps = 22/378 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K + +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY + E E LPML+SACPGW+ YAE+ LG ++P++ + KSPQQ +
Sbjct: 99 SQKEFVRRYHRHSEEQRE-----LPMLTSACPGWVRYAERVLGRPVIPHLCTAKSPQQIM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ P++I+HV V PCYDKKLEA RE L+ T
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLSTTLNGARGT----------- 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVFRHA 323
D VLT+GE+ +++ + +++++ +D + +V +E ++ G SS G+ VFRHA
Sbjct: 203 DCVLTSGEIAQIMEQSDL---SVKDTAVDTLFGDVKEEVAVWRHDGVSSDGHLAHVFRHA 259
Query: 324 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
AK LFG+ IE + ++ +RN DF EV LE G+ LL+FA YGF+N+QN++ K+K K
Sbjct: 260 AKELFGEHIE-EINYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMILKLKKGKFP 318
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY + + P + V LY +
Sbjct: 319 YHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SGIPVRPPESSAHVEELYQQ 377
Query: 444 WLEQPGSEKAKKHVHTEY 461
WLE S K ++ +HT Y
Sbjct: 378 WLEGTESPKVQEVLHTTY 395
>gi|427796411|gb|JAA63657.1| Putative nuclear architecture related protein, partial
[Rhipicephalus pulchellus]
Length = 390
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 244/423 (57%), Gaps = 48/423 (11%)
Query: 68 SAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
SAETV++ +QS ++ + + K K ++++++PQ AS A + + KL
Sbjct: 1 SAETVLITQQSSEQLYTVLKENAELPEEKRKLIVVTVAPQVAASFAGKYSVGYESASAKL 60
Query: 120 TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 179
T F K+LG + D++ R+ LIE +FI R+ + ++SD ++LP+L+S+CPG++
Sbjct: 61 TGFFKTLGAHYVLDSTFGREFALIEVLRDFIERWAR-RDSD----RTALPLLASSCPGFV 115
Query: 180 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 239
CYAEK G +LP+IS +SPQQ +G+ +K + +LG + D+IYHV+VMPCYDKKLEA+
Sbjct: 116 CYAEKTHGDVLLPHISRARSPQQIMGSLVKKFLASRLGKKADQIYHVSVMPCYDKKLEAS 175
Query: 240 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 299
R DF DE +VD V+T+ EV ++ + +F+ L + D +
Sbjct: 176 RADFY-----------DEIYSTRDVDCVITSVEVESMLAKEDKSFDELPSAASDSLF-RC 223
Query: 300 DDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL 358
+ G Y GS SGGY E VF AA+ LF + E + FKT+RN DFREV LE+ G+T+
Sbjct: 224 EVGGRPYRHPGSGSGGYCEYVFVEAARLLFHRRPE-EVVFKTLRNQDFREVTLELGGETV 282
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 418
L+FA+ GF+N+QN+V+K+K KC Y F+E+MACP+GCLNGG Q++P G S + L++ +
Sbjct: 283 LRFAIANGFRNIQNVVQKMKRAKCPYHFIEIMACPAGCLNGGAQLRPDDGDS-RALLRRV 341
Query: 419 ETIYLENVMLADPFKNPLVRSLYDEW--LEQP----GSEKAKKHVHTEYHPVVKSITAQL 472
N V +Y +W LE P G + T YH + K+ A
Sbjct: 342 --------------XNKAVLEVYRDWLGLEDPLHGTGGSGDATLLRTTYHALEKTTNALN 387
Query: 473 HNW 475
W
Sbjct: 388 IRW 390
>gi|149055127|gb|EDM06944.1| rCG33233 [Rattus norvegicus]
Length = 408
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/377 (39%), Positives = 225/377 (59%), Gaps = 21/377 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY Q E E LPML+SACPGW+ YAE+ LG I+PY+ + KSPQQ +
Sbjct: 99 SQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAERVLGRPIIPYLCTAKSPQQVM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ P++I+H+ V PCYDKKLEA RE L+ T
Sbjct: 154 GSLVKDYFARQQSLAPEKIFHIVVAPCYDKKLEALREGLSPTLNGARGT----------- 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ +++ + ++++ +D + +V + SS G+ VFRHAA
Sbjct: 203 DCVLTSGEIAQIMEQSDL---SVKDIAVDTLFGDVKEMAVRRHDGVSSDGHLAHVFRHAA 259
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LFG+ +E + ++ +RN DF EV LE G+ LL+FA YGF+N+QN++ K+K K Y
Sbjct: 260 KELFGEHVE-EITYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIMKLKKGKFPY 318
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+ACP GCLNG GQ + + G + + L++ +E IY + + P + V+ LY EW
Sbjct: 319 HFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SGIPVWPPESSTHVQELYQEW 377
Query: 445 LEQPGSEKAKKHVHTEY 461
LE S K ++ +HT Y
Sbjct: 378 LEGTESPKVQEVLHTSY 394
>gi|170092281|ref|XP_001877362.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647221|gb|EDR11465.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 494
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 259/480 (53%), Gaps = 61/480 (12%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKAT--------------------FKNPDKPQVSTS 44
FS L + DL+DFI P+Q C+ ++ D TS
Sbjct: 3 FSGALTLTDLNDFITPAQACIKPVEHVEKEAGTADTEIHIDSSGAYYEVSGNDSSSQPTS 62
Query: 45 SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG-------KAVIISLS 97
S +Q E +ISL DCLACSGCITSAE+V++ QS E L+ + K +IS++
Sbjct: 63 SGKQLEQAQISLNDCLACSGCITSAESVLITLQSHTEVLNFLEANSSSSESYKIPVISIA 122
Query: 98 PQSRASLAEHFG------ISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFI 150
PQS ASLA I+P QV +++ F K+ LG +FDT+ +R L L E EF
Sbjct: 123 PQSLASLAASLSHSSPTPITPRQVLRRVELFCKNVLGFAHVFDTTFARHLALREHVAEFE 182
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R + Q + E + LPML+SACPGWICYAEK S +LP+I++ KSPQQ +G +K
Sbjct: 183 ERRLKDQ-AGGEDAVGQLPMLASACPGWICYAEKA-HSEMLPFIATTKSPQQVMGTLVKE 240
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ K G P ++YHV+VMPCYDKKLEA+R+DF ETY +VD V+TT
Sbjct: 241 WMGAKWGKLPQDVYHVSVMPCYDKKLEASRQDFY------NETYSTR-----DVDCVITT 289
Query: 271 GEVLDLIQLKAVNF---EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 327
GE+ +++ K N L+++P ++ D L SSG Y +++ H +
Sbjct: 290 GELELMMREKEWNLSLPRELDDAPWQSSSSSFDLPELLQHPGSSSGSYLQSIVSHLTAS- 348
Query: 328 FGKVIEGHLEFKTIRNSDFRE-VALEV-EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 385
I L KT+RN+D+ E V EV G + K A CYGF+NLQN+VRK + Y
Sbjct: 349 --SSIPLQLSVKTLRNADYEEHVLTEVGSGNIVFKGAKCYGFRNLQNVVRKTQHSGRSYD 406
Query: 386 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-----VMLADPFKNPLVRSL 440
++EVMACP GC+NGGGQ+K P KE + +E +Y ++ V LAD + R L
Sbjct: 407 YIEVMACPGGCVNGGGQLK-VPAWGDKEWTRKVEEVYWDDRTPAAVELADRMTELVHREL 465
>gi|339233522|ref|XP_003381878.1| nuclear prelamin A recognition factor [Trichinella spiralis]
gi|316979259|gb|EFV62068.1| nuclear prelamin A recognition factor [Trichinella spiralis]
Length = 422
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 160/408 (39%), Positives = 243/408 (59%), Gaps = 44/408 (10%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSL--KKATFKNP-----DKPQVSTSSKQQA--EP 51
+S FS T+R+ DL+DFIAPSQNC+ + K++T D+ +++ SS+++ +P
Sbjct: 26 LSMSFSGTVRLTDLNDFIAPSQNCIKPILDKRSTANQSERMRFDRDEINKSSQEKRILKP 85
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI----NKGKAV--------IISLSPQ 99
V ++L DCLACSGCITSAETV++E+Q EFL I N K + ++S+SPQ
Sbjct: 86 VSVTLDDCLACSGCITSAETVLIEQQGPKEFLKMIEEFSNDNKVISKELKSLFVVSISPQ 145
Query: 100 SRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
SRASLA + ++ +KL FL+SLG DT+ +R+ +L+ EF+ Y+++ +
Sbjct: 146 SRASLAASYNLTVEVTQRKLCAFLRSLGADICLDTTFARNFSLLATAEEFVDYYRKNYLN 205
Query: 160 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 219
S S P++++ CPGW+CYAEK + ++P +S V+SPQ G+ +K ++ + +
Sbjct: 206 CTSTSLSISPLITAICPGWVCYAEKSVSDVVIPLMSKVRSPQAIAGSFVKDYLSKTMNIL 265
Query: 220 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 279
P+ I HVT+MPC+DKKLEA+R F+ D+G EVD VL+T ++ ++
Sbjct: 266 PNRIRHVTIMPCFDKKLEASRSAFL----------ADDG-SSREVDLVLSTSDIYMIV-- 312
Query: 280 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEF 338
+E S L L ++ DE LY GS SGGY E VF++AAK LF + +E+
Sbjct: 313 -------IENSDL-LCLFDIFDENTLYNHEGSGSGGYLEFVFKYAAKELFNLDVSS-VEY 363
Query: 339 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
RN D +E L + K L ALCYGF+N+QN++RK++ KC Y F
Sbjct: 364 VAQRNKDIQEARLIHDNKVLFHMALCYGFRNIQNLIRKIRAGKCAYHF 411
>gi|426238303|ref|XP_004013094.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Ovis
aries]
Length = 408
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 225/377 (59%), Gaps = 21/377 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K + + +S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ R++Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 99 SQKEFVRRFRQHNEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ PD+I+HV V PCYDKKLEA +ED + T
Sbjct: 154 GSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALQEDVLTASRGSRGT----------- 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ +++ V ++ E+ LD + NV +E S GY +FRHAA
Sbjct: 203 DCVLTSGEIAQMMEQSDV---SVREAALDTLFGNVKEEELRRHDGAGSDGYLAHIFRHAA 259
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LF + + G + ++ +RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K K Y
Sbjct: 260 KELFNEDV-GEVTYRALRNKDFQEVTLEKSGEVLLRFAAAYGFRNIQNVVLKLKKGKFPY 318
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+AC GCLNG GQ + G++ K L++ ++ IY ++ + P + V+ LY EW
Sbjct: 319 HFVEVLACAGGCLNGRGQAQTADGRTDKALLQKMKGIYA-DIPVQLPEASTHVQELYQEW 377
Query: 445 LEQPGSEKAKKHVHTEY 461
L+ S + ++ +HT Y
Sbjct: 378 LDGTDSPRVQEALHTAY 394
>gi|312384015|gb|EFR28853.1| hypothetical protein AND_02688 [Anopheles darlingi]
Length = 327
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 221/348 (63%), Gaps = 25/348 (7%)
Query: 131 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 190
+ DT + DL LIE+ NEF+ RY +++S LPML+S+CPGW+CYAEK G++I
Sbjct: 2 VVDTKIADDLALIESRNEFVERYNTNRKS--------LPMLASSCPGWVCYAEKTHGNFI 53
Query: 191 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 250
LPYIS+ +SPQQ +G +K ++ + +G D IYHVTVMPCYDKKLEA+REDF ++++
Sbjct: 54 LPYISTTRSPQQIMGMLVKQYLAKIIGTTSDRIYHVTVMPCYDKKLEASREDFFNEVENS 113
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQ-LKAVNFEALEESPLDKMLTNVDDEGHLYGVA 309
+VD V+T+ E+ +++ L + +E+ P+D ++
Sbjct: 114 H-----------DVDCVITSIEIEQMLESLGLETLQLVEKCPIDWPWPTARPPAFVWSHE 162
Query: 310 GS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 368
S SGGY+E + ++AA+ LF ++ +EFK +RN+D RE LE EGK +L+FA+ GF+
Sbjct: 163 SSGSGGYSEHILKYAARKLFNLPVDA-VEFKPLRNNDMREAVLEHEGKVVLRFAIANGFR 221
Query: 369 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 428
N+QN+V+K+K K Y +VE+MACPSGCLNGG Q++P G++P+EL LE +Y ++
Sbjct: 222 NIQNMVQKLKRGKSTYDYVEIMACPSGCLNGGAQVRPDGGKTPRELTAELELMY-RSLPQ 280
Query: 429 ADPFKNPLVRSLYDEWLEQPG-SEKAKKHVHTEYHPVVKSITAQLHNW 475
++P +N V+ LY +L+ G + K + +HT YH + K +A W
Sbjct: 281 SNP-ENESVQHLYTTFLDSDGDNNKRQSLLHTTYHQIEKINSALNIKW 327
>gi|84452151|ref|NP_001033707.1| nuclear prelamin A recognition factor isoform c [Homo sapiens]
gi|119610200|gb|EAW89794.1| hCG30379, isoform CRA_d [Homo sapiens]
Length = 397
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 238/404 (58%), Gaps = 29/404 (7%)
Query: 66 ITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFK 117
+T+ E V L +Q+ +F +N K K +++S+ PQS A F +S +
Sbjct: 1 MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
+L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPG
Sbjct: 61 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPG 115
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
W+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLE
Sbjct: 116 WVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLE 175
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
A +E L D VLT+GE+ +++ + ++ ++ +D +
Sbjct: 176 ALQESLPPALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFG 221
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+
Sbjct: 222 DLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEV 280
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
+L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++
Sbjct: 281 VLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQ 340
Query: 418 LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 341 MEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 383
>gi|169847095|ref|XP_001830259.1| nuclear prelamin A recognition factor-like protein [Coprinopsis
cinerea okayama7#130]
gi|116508511|gb|EAU91406.1| nuclear prelamin A recognition factor-like protein [Coprinopsis
cinerea okayama7#130]
Length = 748
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 185/502 (36%), Positives = 253/502 (50%), Gaps = 118/502 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV----------------------- 41
FS TL + DL+DFI+P+Q C+ +++ K D+P+
Sbjct: 3 FSGTLTLTDLNDFISPAQACIKPVEEVK-KTDDQPKTGAKTEIVIDSTGSYYEVSNEPSY 61
Query: 42 -----------STSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK 90
S+SS Q+ E +I+L DCLACSGCITSAE+V++ QS E + I K
Sbjct: 62 GSVDISKGNTRSSSSGQKLEQAQINLNDCLACSGCITSAESVLITLQSHTEVFNFIESNK 121
Query: 91 A--------VIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFLK-SLGVKSIFDT 134
+++S++PQS ASLA +PLQV +++ F K +LG +FDT
Sbjct: 122 DACSDTKKLLVLSIAPQSLASLAASLTARFPQALTTPLQVLRRVRAFCKETLGFSEVFDT 181
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R L+L E EF R K+ + E + LPML+SACPGWICYAEK +LP+I
Sbjct: 182 TFARHLSLREHVLEFEERKKKDSQGGQE-AEGQLPMLASACPGWICYAEKAHAG-MLPFI 239
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
S KSPQQ +G +K + QK +PD IYHV+VMPCYDKKLEA+R+DF + S
Sbjct: 240 SRTKSPQQVMGTLVKEWMAQKWNKKPDGIYHVSVMPCYDKKLEASRQDFYNDVYST---- 295
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV----AG 310
RD VD V+TTGE+ +++ K + LD+ T+ D HL +
Sbjct: 296 RD-------VDCVITTGELELMMKEKDWDISKSVPHELDEQQTSPSDAIHLPELIQHPGS 348
Query: 311 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFALCYGFQ 368
SSG Y +++ H +T + L K +RN+D+ E L E GK + K A CYGF+
Sbjct: 349 SSGSYLQSIIDHVTET---SPVTLALNTKLMRNADYEEFTLAEEASGKIVFKGAKCYGFR 405
Query: 369 NLQNIVRKVKMRKC---------------------------------------------D 383
NLQNIVRKV K
Sbjct: 406 NLQNIVRKVGRDKGVRLGGGAAGKLGGKATGGVGRRIARRKGADAAAGGGSGEASAANRQ 465
Query: 384 YQFVEVMACPSGCLNGGGQIKP 405
Y +VEVMACPSGC+NGGGQ+KP
Sbjct: 466 YDYVEVMACPSGCVNGGGQLKP 487
>gi|426197521|gb|EKV47448.1| hypothetical protein AGABI2DRAFT_185390 [Agaricus bisporus var.
bisporus H97]
Length = 590
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 202/603 (33%), Positives = 288/603 (47%), Gaps = 147/603 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTS----------------- 44
FS L + DL+DFI PSQ C+ ++ K + D +T
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQTNKPVQQEKDAGAAATEIHIDGSGTYYEVAQDGG 62
Query: 45 --SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS---NINKGKAVIISLSPQ 99
+ ++ E +ISL DCLACSGCITSAE+V++ QS E LS N + + IIS++PQ
Sbjct: 63 DVTGRKLEQAQISLNDCLACSGCITSAESVLITLQSHVEVLSVLSNPSDERIPIISIAPQ 122
Query: 100 SRASLAEHFG-------ISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIA 151
S ASLA + ++P ++F+++ TF S LG +FDT+ +R ++L E EFI
Sbjct: 123 SLASLAAAYSQHNPSELLTPREIFRRIRTFCTSILGFAYVFDTNFARHISLNEHVKEFIE 182
Query: 152 RYKQS-QESDDERS----NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
R +Q + DD+ S + +LPML+SACPGWICYAEK +LP+I+ KSPQQ +G
Sbjct: 183 RREQHLAKGDDDGSPRSPSETLPMLASACPGWICYAEKAH-PEMLPFIARTKSPQQVMGT 241
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K I ++LG +P+EIYHV+VMPCYDKKLEA+R+DF D+ + +VD
Sbjct: 242 LVKKWIGKRLGKQPNEIYHVSVMPCYDKKLEASRQDFF-----------DDIFQTRDVDC 290
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLD---------KMLTNVD-----DEGHLYGVAG-S 311
V+TTGE+ +++ + + +SP D K LT+ D L +G S
Sbjct: 291 VVTTGELELMMKEFGWDLKTSSQSPSDLTTSRSIPLKDLTSARRHPGIDLPELVTHSGTS 350
Query: 312 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL---------EVEGKTLLKFA 362
SG Y ++ RH +T + L KT+RNSD+ E L + GK + K A
Sbjct: 351 SGSYLHSILRHLTET---SPVPLMLSVKTVRNSDYEEYVLRESAPSLSGDAVGKVIFKGA 407
Query: 363 LCYGFQNLQNIVRKV---------------------------KMRKC------------- 382
CYGF+NLQN+VRKV ++R
Sbjct: 408 KCYGFRNLQNVVRKVGRERGVRVGSGAAGRLGAPGGAGKGVRRLRAARKGQGGEGGAPGG 467
Query: 383 ----DYQFVEVMACPSGCLNGGGQIKPKPGQS------------------------PKEL 414
Y +VEVMACP GC+NGGGQ+KP G S K
Sbjct: 468 DGERKYDYVEVMACPGGCVNGGGQLKPPDGTSLDAEGYQRDWDGEGAIPSASAKWGDKGW 527
Query: 415 IKTLETIYLENVMLADPFK--NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 472
K +E Y + D + + + + +E E G + K TEY V +
Sbjct: 528 TKKVEEAYWRDTGRVDAERSADQVADGIVEELWEAYGDSEKKGLFRTEYRAVESDVVGLA 587
Query: 473 HNW 475
W
Sbjct: 588 VKW 590
>gi|290562579|gb|ADD38685.1| Probable cytosolic Fe-S cluster assembly factor GL21135
[Lepeophtheirus salmonis]
Length = 446
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 250/480 (52%), Gaps = 42/480 (8%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
S FS +++ L DFI PS C+ + + + Q Q ISL DCLA
Sbjct: 3 SRGFSGAIQLTGLDDFITPSLACIKPVDSTNNNSSESAQDLEGKPPQK--ATISLTDCLA 60
Query: 62 CSGCITSAETVMLEKQSLDEFLSNI-NKGKA---VIISLSPQSRASLAEHFGISPLQVFK 117
C+GC+T+AE+V++E QS DE +KGK +I+S+S QS SL+ FG+S Q
Sbjct: 61 CAGCVTTAESVLVEAQSSDELRKRFQSKGKVYDVLIVSVSTQSLISLSNKFGLSLSQTSN 120
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
+ + KSLGV I++ D+ L E E I Q + P+L+S+CPG
Sbjct: 121 VIINYFKSLGVDYIYNLKICEDIALQEQSIETILHLSQGNKG---------PILTSSCPG 171
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL-GFRPDEIYHVTVMPCYDKKL 236
WICYAEK G +ILPYIS VKSPQQ +GA +K + I HVTVMPC+DKKL
Sbjct: 172 WICYAEKTHGDWILPYISKVKSPQQIMGALVKSWGANNIYNTESTRICHVTVMPCFDKKL 231
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKM 295
EA+R DF +DS IP+VD V T+ E+ +I + + ES DK+
Sbjct: 232 EASRRDF---MDSNN---------IPDVDLVTTSVELEQMILADNFSLHDIPESYAFDKI 279
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
+ +E + +GS GG+ E++F K+LF + L++ +N DF E+ E G
Sbjct: 280 FESCSNELEVNHGSGS-GGFCESIFLDTIKSLFDDN-DPSLDYNMRKNLDFMELKYEKNG 337
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
+ + F + GF+N+QNIV+ +K +KCD+ F+E+MACPSGCLNGG Q P+ + K I
Sbjct: 338 RKI-HFGVANGFRNIQNIVQMLKRKKCDFDFIEIMACPSGCLNGGAQAVPEDIDN-KVFI 395
Query: 416 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
T++ +Y N L + LY E K +T YH + K W
Sbjct: 396 STIKELYNSLPKTRSSNNNSLPKDLYSE---------LKPLFYTNYHAIPKETNGLTIEW 446
>gi|290463009|gb|ADD24552.1| Probable cytosolic Fe-S cluster assembly factor GL21135
[Lepeophtheirus salmonis]
Length = 449
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 176/480 (36%), Positives = 250/480 (52%), Gaps = 42/480 (8%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
S FS +++ L DFI PS C+ + + + Q S Q ISL DCLA
Sbjct: 6 SRGFSGAIQLTGLDDFITPSLACIKPVDSTNNNSSESAQDLESKPPQK--ATISLTDCLA 63
Query: 62 CSGCITSAETVMLEKQSLDEFLSNI-NKGKA---VIISLSPQSRASLAEHFGISPLQVFK 117
C+GC+T+AE+V++E QS DE +KGK +I+S+S QS SL+ FG+S Q
Sbjct: 64 CAGCVTTAESVLVEAQSSDELRKRFQSKGKVYDVLIVSVSTQSLISLSNKFGLSLSQTSN 123
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
+ + KSLGV I++ D+ L E E I Q + P+L+S+CPG
Sbjct: 124 VIINYFKSLGVDYIYNLKICEDIALQEQSIETILHLSQGNKG---------PILTSSCPG 174
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL-GFRPDEIYHVTVMPCYDKKL 236
WICYAEK G +ILPYIS VKSPQQ +GA +K + I HVTVMPC+DKKL
Sbjct: 175 WICYAEKTHGDWILPYISKVKSPQQIMGALVKSWGANNIYNTESTRICHVTVMPCFDKKL 234
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKM 295
EA+R DF +DS IP+VD T+ E+ +I + + ES DK+
Sbjct: 235 EASRRDF---MDSNN---------IPDVDLATTSVELEQMILADNFSLHDIPESYAFDKI 282
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
+ +E + +GS GG+ E++F K+LF + L++ +N DF E+ E G
Sbjct: 283 FESCSNELEVNHGSGS-GGFCESIFLDTIKSLFDDN-DPSLDYNMRKNLDFMELKYEKNG 340
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
+ + F + GF+N+QNIV+ +K +KCD+ F+E+MACPSGCLNGG Q P+ + K I
Sbjct: 341 RKI-HFGVANGFRNIQNIVQMLKRKKCDFDFIEIMACPSGCLNGGAQAVPEDIDN-KVFI 398
Query: 416 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
T++ +Y N L + LY E K +T YH + K W
Sbjct: 399 STIKELYNSLPKTRSSNNNSLPKDLYSE---------LKPLFYTNYHAIPKETNGLTIEW 449
>gi|409080606|gb|EKM80966.1| hypothetical protein AGABI1DRAFT_119505 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 591
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 204/604 (33%), Positives = 288/604 (47%), Gaps = 148/604 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLK---KATFKNPDKPQVSTS----------------- 44
FS L + DL+DFI PSQ C+ ++ K + D +T
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQTNKPVQQEKDAGAAATEIHIDGSGTYYEVAQDGG 62
Query: 45 --SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS---NINKGKAVIISLSPQ 99
+ ++ E +ISL DCLACSGCITSAE+V++ QS E LS N + IIS++PQ
Sbjct: 63 DMTGRKLEQAQISLNDCLACSGCITSAESVLITLQSHVEVLSVLSNPTDERIPIISIAPQ 122
Query: 100 SRASLAEHFG-------ISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIA 151
S ASLA + ++P ++F+++ TF S LG +FDT+ +R ++L E EFI
Sbjct: 123 SLASLAAAYSQHNSSELLTPREIFRRIRTFCTSILGFAYVFDTNFARHISLNEHVKEFIE 182
Query: 152 RYKQS-QESDDE---RSNS-SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
R +Q + DD+ RS S +LPML+SACPGWICYAEK +LP+I+ KSPQQ +G
Sbjct: 183 RREQHLAKGDDDGLPRSPSETLPMLASACPGWICYAEKAH-PEMLPFIARTKSPQQVMGT 241
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K I ++LG +P+EIYHV+VMPCYDKKLEA+R+DF D+ + +VD
Sbjct: 242 LVKKWIGRRLGKQPNEIYHVSVMPCYDKKLEASRQDFF-----------DDIFQTRDVDC 290
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLD---------KMLTNVD-----DEGHLYGVAG-S 311
V+TTGE+ +++ + + +SP D K LT+ D L +G S
Sbjct: 291 VVTTGELELMMKEFGWDLKTSSQSPSDLTTSRSIPLKDLTSARRHPGIDLPELVTHSGTS 350
Query: 312 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL---------EVEGKTLLKFA 362
SG Y ++ RH +T + L KT+RNSD+ E L + GK + K A
Sbjct: 351 SGSYLPSILRHLTET---SPVPLMLSVKTVRNSDYEEYVLRESAPSSSGDAVGKVIFKGA 407
Query: 363 LCYGFQNLQNIVRKV---------------------------KMRKC------------- 382
CYGF+NLQN+VRKV ++R
Sbjct: 408 KCYGFRNLQNVVRKVGRERGVRVGSGAAGRLGAPGGAGKGVRRLRAVRKGQGGEGGAPGG 467
Query: 383 -----DYQFVEVMACPSGCLNGGGQIKPKPGQS------------------------PKE 413
Y +VEVMACP GC+NGGGQ+KP G S K
Sbjct: 468 DGEERKYDYVEVMACPGGCVNGGGQLKPPDGTSLDAEGYQRDWDGEGAIPSASAKWGDKG 527
Query: 414 LIKTLETIYLENVMLADPFK--NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 471
K +E Y + D + + + + +E E G + K TEY V +
Sbjct: 528 WTKKVEEAYWRDTGRVDAERSADQVADGIVEELWEAYGDSEKKGLFRTEYRAVESDVVGL 587
Query: 472 LHNW 475
W
Sbjct: 588 AVKW 591
>gi|71995015|ref|NP_498092.4| Protein OXY-4 [Caenorhabditis elegans]
gi|75022888|sp|Q9N392.5|NARF_CAEEL RecName: Full=Probable cytosolic Fe-S cluster assembly factor oxy-4
gi|373219738|emb|CCD69851.1| Protein OXY-4 [Caenorhabditis elegans]
Length = 457
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 172/487 (35%), Positives = 272/487 (55%), Gaps = 51/487 (10%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK----------NPDKPQVSTSSK-QQAEPVK 53
FS +R+ ++SDFIAP+ +C++ L+ T + KP+ SSK ++ + VK
Sbjct: 6 FSGVVRLSNVSDFIAPNLDCIIPLETRTVEKKKEESQVNIRTKKPKDKESSKTEEKKSVK 65
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL 113
ISL DCLACSGCITSAETV++E+QS I K ++++SPQ+ S+A G S
Sbjct: 66 ISLADCLACSGCITSAETVLVEEQSFGRVYEGIQNSKLSVVTVSPQAITSIAVKIGKSTN 125
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+V K + +F + LGVK + D+S +R + E ++S P+LSS
Sbjct: 126 EVAKIIASFFRRLGVKYVIDSSFARKFA-----------HSLIYEELSTTPSTSRPLLSS 174
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
ACPG++CYAEK G ++P IS ++SPQ GA IK + ++ G P +++H VMPC+D
Sbjct: 175 ACPGFVCYAEKSHGELLIPKISKIRSPQAISGAIIKGFLAKREGLSPCDVFHAAVMPCFD 234
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA--LEESP 291
KKLEA+RE F + +G ++ E D V++T E+L+ I +K N EA +E
Sbjct: 235 KKLEASREQF-----------KVDGTDVRETDCVISTAELLEEI-IKLENDEAGDVENRS 282
Query: 292 LDKMLTNVDDEGHLYG-VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREV 349
++ + +G + G G+SGGYA+ + R G ++ KT + N +
Sbjct: 283 EEEQWLSALSKGSVIGDDGGASGGYADRIVRDFVLENGGGIV------KTSKLNKNMFST 336
Query: 350 ALEVE-GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+E E G+ LL+ A YGF+N+QN+VRK+K +K +VE+MACP GC NGGGQI+ +
Sbjct: 337 TVESEAGEILLRVAKVYGFRNVQNLVRKMKTKKEKTDYVEIMACPGGCANGGGQIRYETM 396
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+E + +E +Y E++ D + + + +EW + + + + T+Y PV ++
Sbjct: 397 DEREEKLIKVEALY-EDLPRQDDEETWI--KVREEW--EKLDKNYRNLLFTDYRPVETNV 451
Query: 469 TAQLHNW 475
AQ+ W
Sbjct: 452 -AQVLKW 457
>gi|402592057|gb|EJW85986.1| hypothetical protein WUBG_03101 [Wuchereria bancrofti]
Length = 449
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 280/481 (58%), Gaps = 50/481 (10%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ----QAEPVKISLKDCL 60
FS ++I ++SDFIAPSQ C++ L+ + +V + SK+ + V+I+LKDCL
Sbjct: 9 FSGIIKISNVSDFIAPSQACILPLQSKESDVEVQIRVRSRSKKVDDNAVKKVEITLKDCL 68
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
ACSGCITSAETV++++QS +FL + K K ++++SPQS AS+A G + + +
Sbjct: 69 ACSGCITSAETVLIKEQSKLKFLEGLAKAKLSVMTVSPQSIASIAYKRGCHLSEAVRLIA 128
Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
K++G+K + D+S R LTL + +EF +ES +R P+ + CPG++C
Sbjct: 129 RIFKNMGIKYVVDSSFGRLLTLSLSYDEF-------KESQLQR-----PIFTGVCPGFVC 176
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK G+ ++P+IS V+SPQ +GA +K ++ +K RP+EI+H +VMPC+DKKLEAAR
Sbjct: 177 YAEKTHGTLLIPHISRVRSPQAMMGALVKDYLARKFNVRPEEIFHASVMPCFDKKLEAAR 236
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
++ EVD VL+TGEV D I + + E+ + L ++
Sbjct: 237 ------------SHSGNHFNCREVDCVLSTGEV-DAILDECSSTESFSVAGKVGWLNALE 283
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFK-TIRNSDFREVALEVEGKTL- 358
+ + GSSGGYAE + + F + + LE K TI++ ++ E+ ++G+T+
Sbjct: 284 NGKIISSEGGSSGGYAEYIVKR-----FVEESKTPLELKRTIKDKNW-EIIEAIDGETIV 337
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 418
L A CYGF+N+QN V+K+K KC+Y +VE+MACPSGC+NGGGQI+ + K+L+ +
Sbjct: 338 LSVAKCYGFRNIQNQVQKLKRSKCNYDYVEIMACPSGCINGGGQIRSASIEERKQLLDAI 397
Query: 419 ETIYLENV--MLADPFKNPLVRSLYD-EWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-N 474
E+ M + + S+ + +W+ ++T+YH VVKS ++ N
Sbjct: 398 NLSCSEDNSEMEEELERVKEEWSILNPDWMNL---------LYTKYHAVVKSDADRISTN 448
Query: 475 W 475
W
Sbjct: 449 W 449
>gi|193787011|dbj|BAG51834.1| unnamed protein product [Homo sapiens]
Length = 397
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 237/404 (58%), Gaps = 29/404 (7%)
Query: 66 ITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFK 117
+T+ E V L +Q+ +F +N K K +++S+ PQS A F +S +
Sbjct: 1 MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
+L FLKSLGV +FDT+ + D +++E+ EF+ Y+Q S++ER+ LPML+SACPG
Sbjct: 61 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRLYRQ--HSEEERT---LPMLTSACPG 115
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
W+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLE
Sbjct: 116 WVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLE 175
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
A +E L D VLT+GE+ +++ + ++ ++ +D +
Sbjct: 176 ALQESLPPALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFG 221
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 357
++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+
Sbjct: 222 DLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEV 280
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
+L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++
Sbjct: 281 VLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQ 340
Query: 418 LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 341 MEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 383
>gi|348558156|ref|XP_003464884.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 2
[Cavia porcellus]
Length = 407
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 234/394 (59%), Gaps = 24/394 (6%)
Query: 68 SAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLG 127
SAE L ++S ++ + +K K +++S+ PQS A +S ++L FLKSLG
Sbjct: 24 SAEARSLAQESCEK--CDTSKHKVLVVSVCPQSLPYFAAKLNLSVTDASRRLCGFLKSLG 81
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
V +FD + + D +++E+ EF+ RY Q SD++R+ LPML+SACPGW+ YAE+ LG
Sbjct: 82 VHYVFDMAIAADFSILESQREFVRRYHQ--HSDEQRA---LPMLTSACPGWVRYAERVLG 136
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
+ P++ + KSPQQ +G+ +K + ++ P++I+HV V PCYD+KLEA +E F
Sbjct: 137 RPVTPHLCTAKSPQQVMGSLVKDYFAKQQNLPPEKIFHVVVAPCYDRKLEALQEGFSTAA 196
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 307
T D VLT+GEV ++ + +++++ +D + + + +
Sbjct: 197 PGARGT-----------DCVLTSGEVAQIMDQSGL---SVKDAAVDTLFGDEEVAMRRHD 242
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 367
AGS G A VFRHAAK LF + +E + + +RN DF+EV LE G+ LL+FA YGF
Sbjct: 243 GAGSDGHLAH-VFRHAAKELFNERVE-EITYCPLRNKDFQEVTLEKNGEVLLRFAAAYGF 300
Query: 368 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 427
+N+QN+V K++ K Y FVEV+ACP GCLNG GQ + K G K L++ +E IY ++
Sbjct: 301 RNVQNLVLKLRKGKFPYHFVEVLACPGGCLNGRGQAQTKDGHMDKSLLRQMEGIY-ADIP 359
Query: 428 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ P + V+ LY EWLE S +A + +HT +
Sbjct: 360 VQPPESSTHVQELYQEWLEGTDSLRAHETLHTTF 393
>gi|395825754|ref|XP_003786086.1| PREDICTED: nuclear prelamin A recognition factor isoform 2
[Otolemur garnettii]
Length = 408
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 21/377 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY Q E + LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 99 SQKEFVRRYHQHSEKE-----RVLPMLTSACPGWVRYAERVLGRPVTPHLCTAKSPQQVM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ P++I+HV V PCYD+KLEA RE F T R
Sbjct: 154 GSLVKDYFARQQSLSPEKIFHVIVAPCYDRKLEALREGF-------SSTSRSS----LGA 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ Q+ A + +++++ +D + + +E + SS G+ VFR+AA
Sbjct: 203 DCVLTSGEI---AQIMAQSDLSVQDATVDTLFGDSKEEMVMRHDGASSDGHLVHVFRYAA 259
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LF + +E + ++ +RN DF+EV LE +G+ LL+FA YGF+N+QN++ K+K Y
Sbjct: 260 KELFNEDVE-EVTYRALRNKDFQEVTLEKDGEVLLRFAAAYGFRNIQNMILKLKKGTFPY 318
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+ACP GCLNG GQ + + G K L++ +E IY ++ + P + V+ LY +W
Sbjct: 319 HFVEVLACPGGCLNGRGQAETQDGHVDKALLRQMEGIY-SDIPVRPPETSANVQELYQQW 377
Query: 445 LEQPGSEKAKKHVHTEY 461
L+ S KA++ +HT +
Sbjct: 378 LDGVDSPKAQETLHTTF 394
>gi|134284357|ref|NP_001077077.1| nuclear prelamin A recognition factor isoform d [Homo sapiens]
gi|16741189|gb|AAH16440.1| NARF protein [Homo sapiens]
gi|119610201|gb|EAW89795.1| hCG30379, isoform CRA_e [Homo sapiens]
Length = 408
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 227/377 (60%), Gaps = 21/377 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +
Sbjct: 99 SQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ P++I+HV V PCYDKKLEA +E L
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRG-----------A 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ +++ + ++ ++ +D + ++ ++ SS G+ +FRHAA
Sbjct: 203 DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAA 259
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K +
Sbjct: 260 KELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPF 318
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + V+ LY EW
Sbjct: 319 HFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEW 377
Query: 445 LEQPGSEKAKKHVHTEY 461
LE S KA++ +HT Y
Sbjct: 378 LEGINSPKAREVLHTTY 394
>gi|426346279|ref|XP_004040807.1| PREDICTED: nuclear prelamin A recognition factor isoform 3 [Gorilla
gorilla gorilla]
Length = 408
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 227/377 (60%), Gaps = 21/377 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +
Sbjct: 99 SQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ P++I+HV V PCYDKKLEA +E L
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRG-----------A 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ +++ + ++ ++ +D + ++ ++ SS G+ +FRHAA
Sbjct: 203 DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAA 259
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K +
Sbjct: 260 KELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPF 318
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + V+ LY EW
Sbjct: 319 HFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEW 377
Query: 445 LEQPGSEKAKKHVHTEY 461
LE S KA++ +HT Y
Sbjct: 378 LEGINSPKAREVLHTTY 394
>gi|341895670|gb|EGT51605.1| hypothetical protein CAEBREN_28974 [Caenorhabditis brenneri]
Length = 460
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 172/495 (34%), Positives = 264/495 (53%), Gaps = 64/495 (12%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATF-KNPDKPQVSTSSKQQAE------------P 51
FS +R+ ++SDFIAP+ +C++ L+ T K ++ QV+ +K++ E
Sbjct: 6 FSGVVRLSNVSDFIAPNLDCIIPLETRTVEKKKEESQVNIRTKKKKEDVVPAKSDDVKKS 65
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
VKISL DCLAC+GCITSAETV++E+QS L I K ++++SPQ+ S A S
Sbjct: 66 VKISLADCLACNGCITSAETVLVEEQSFGRLLEGIQNSKLAVVTISPQTFVSFAVKLQKS 125
Query: 112 PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
V ++ F GVK I D+S +R A E + ++S P+L
Sbjct: 126 TGDVATLISKFFHRHGVKYILDSSFARKFAHSLAFEELHST-----------PSTSRPLL 174
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
SSACPG++CYAEK G ++P IS ++SPQ GA IK ++ +K G P +++H VMPC
Sbjct: 175 SSACPGFVCYAEKSHGELLIPKISKIRSPQAISGALIKGYLAKKEGLSPCDVFHAAVMPC 234
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
+DKKLEA+RE F + +G EI E D V++T E+L+ I K ++E+S
Sbjct: 235 FDKKLEASREQF-----------KVDGTEIRETDCVVSTAELLEEIT-KENPEGSIEDST 282
Query: 292 L---DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
+ D+ +T++ + GSSGGYA+ + R G + L N +
Sbjct: 283 VFEGDEWMTHLSRGAVIGDAGGSSGGYADRIVRDFVHQNGGVIKTTKL------NKNMFS 336
Query: 349 VALEV--EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+E G+ LL+ A YGF+N+QN+VRK+K +K +VE+MACP GC NGGGQI+ +
Sbjct: 337 TTVESPESGEILLRVAKVYGFRNVQNLVRKMKTKKEKTDYVEIMACPGGCANGGGQIRYE 396
Query: 407 PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK------KHVHTE 460
++ ++ +E Y D K ++W+E+ + K +H+ T+
Sbjct: 397 TMDEREKRLERVEEEY-------DSLK---AHDTLEDWVEKVRVDWGKVDQDYRRHLFTD 446
Query: 461 YHPVVKSITAQLHNW 475
Y PV ++ AQ W
Sbjct: 447 YKPVETNV-AQALKW 460
>gi|170583169|ref|XP_001896462.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Brugia malayi]
gi|259511299|sp|A8PGQ3.1|NARF_BRUMA RecName: Full=Probable cytosolic Fe-S cluster assembly factor
Bm1_25010
gi|158596328|gb|EDP34689.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Brugia malayi]
Length = 448
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 175/487 (35%), Positives = 281/487 (57%), Gaps = 62/487 (12%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ----QAEPVKISLKDCL 60
FS ++I ++SDFIAPSQ C++ L+ + +V + +K+ + V+++LKDCL
Sbjct: 8 FSGIIKIANVSDFIAPSQACILPLQSKESDVEVQIRVRSRAKKVDDSAVKKVEVTLKDCL 67
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
ACSGCITSAET+++++QS +FL + K + ++++SPQS AS+A G + + +
Sbjct: 68 ACSGCITSAETILIKEQSKPKFLEGLKKAQLSVMTVSPQSIASIAYKRGCHLSEAARLIA 127
Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
++G+K + D+S R LTL + +EF +ES +R P+ + CPG++C
Sbjct: 128 RIFMNMGMKYVVDSSFGRLLTLSLSYDEF-------KESQLQR-----PIFTGVCPGFVC 175
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK G+ ++P+IS V+SPQ +GA +K ++ +K RP+EI+H +VMPC+DKKLEAAR
Sbjct: 176 YAEKTHGTLLIPHISCVRSPQAMMGALVKDYLARKFNVRPEEIFHASVMPCFDKKLEAAR 235
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD---KMLT 297
++ + EVD VL+TGEV ++ + E P+D L
Sbjct: 236 ------------SHSENHFNCREVDCVLSTGEVDAILD----ECSSTESFPVDGKVGWLN 279
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFK-TIRNSDFREVALEVEGK 356
+++ + GSSGGYAE + + F + + L+ K TI++ ++ E+ V+G+
Sbjct: 280 ALENGKIISSEGGSSGGYAEYIVKR-----FVEESKTPLKLKRTIKDKNW-EIIEAVDGE 333
Query: 357 TL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
T+ L A CYGF+N+QN V+K+K KC+Y +VE+MACPSGC+NGGGQI+ + K+L+
Sbjct: 334 TIVLSVAKCYGFRNIQNQVQKLKRSKCNYDYVEIMACPSGCINGGGQIRSASIEERKQLL 393
Query: 416 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA------KKHVHTEYHPVVKSIT 469
T+E E+ S +E LE+ E + ++T+YH VVKS
Sbjct: 394 DTIELPCSED------------NSEMEEQLERVKEEWSILNPDWMNLLYTKYHAVVKSDA 441
Query: 470 AQLH-NW 475
++ NW
Sbjct: 442 DRISTNW 448
>gi|332260436|ref|XP_003279295.1| PREDICTED: LOW QUALITY PROTEIN: nuclear prelamin A recognition
factor [Nomascus leucogenys]
Length = 443
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 237/418 (56%), Gaps = 42/418 (10%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + +SPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGCPITAHLCTARSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+HV V PCYDKKLEA +E L D VLT+GE+ +++ +
Sbjct: 221 FHVIVAPCYDKKLEALQESLPPALHGSR-----------GADCVLTSGEIAQIMEQGDL- 268
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+++++ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN
Sbjct: 269 --SVKDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRN 325
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
DF+EV LE G+ +L+FA YGF+N ++ + +AC + CLNG GQ
Sbjct: 326 KDFQEVTLEKNGEVVLRFAAAYGFRN-------------EFHHIGTLACAARCLNGRGQA 372
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ G + K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 373 QTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 429
>gi|355706349|gb|AES02608.1| nuclear prelamin A recognition factor [Mustela putorius furo]
Length = 340
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 209/345 (60%), Gaps = 21/345 (6%)
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q E + +LPML+SACP
Sbjct: 4 RRLCGFLKSLGVHYVFDTAVAADFSILESQKEFVRRYQQHSEEE-----PALPMLTSACP 58
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I+HV V PCYDKKL
Sbjct: 59 GWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDQIFHVIVAPCYDKKL 118
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA RED D VLT+GEV +Q+ N ++++ +D +
Sbjct: 119 EALREDLPTACHGSRGA-----------DCVLTSGEV---VQMMEQNDHTVKDAAVDTLF 164
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 356
+E SS GY VFRHAAK LF + + G + ++T+RN DF+EV LE G+
Sbjct: 165 GGPKEEEVRRHDGASSDGYLAHVFRHAAKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGE 223
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
LL+FA YGF+N+QN+V K+K + Y FVEV+AC GCL+G GQ + + G++ K L++
Sbjct: 224 VLLRFAAAYGFRNIQNVVLKLKKGRFPYHFVEVLACAGGCLSGRGQAQTEDGRADKALLR 283
Query: 417 TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+E IY ++ + P + V+ LY EWL+ S + ++ +HT Y
Sbjct: 284 QMEGIY-ADIPVRPPETSAHVQELYQEWLDGADSPRVQEALHTMY 327
>gi|116007462|ref|NP_001036427.1| CG17683, isoform E [Drosophila melanogaster]
gi|51951086|gb|EAL24588.1| CG17683, isoform E [Drosophila melanogaster]
Length = 296
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 202/309 (65%), Gaps = 16/309 (5%)
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
MLSS+CPGW+CYAEK G+++LPY+S+ +SPQQ +G +K + K+ IYHVTVM
Sbjct: 1 MLSSSCPGWVCYAEKTHGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVM 60
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PCYDKKLEA+REDF S+ RD VD V+T+ EV L+ +
Sbjct: 61 PCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSEAQQPLSQYDL 109
Query: 290 SPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
LD +NV E ++ + SGGYAE +F++AAK +F + ++ LEFK ++N DFRE
Sbjct: 110 LDLDWPWSNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE 169
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKP 407
+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NGG QI+P
Sbjct: 170 IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCINGGAQIRPTT 229
Query: 408 GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
GQ +EL + LE +Y +N+ ++P +N L + +Y+++L+ S+K+ +HT YH VV
Sbjct: 230 GQHVRELTRKLEELY-QNLPRSEP-ENSLTKHIYNDFLDGFQSDKSYDVLHTRYHDVVSE 287
Query: 468 ITAQLH-NW 475
++ L+ NW
Sbjct: 288 LSISLNINW 296
>gi|268572543|ref|XP_002648987.1| Hypothetical protein CBG21318 [Caenorhabditis briggsae]
Length = 452
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 171/483 (35%), Positives = 261/483 (54%), Gaps = 48/483 (9%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATF-KNPDKPQVSTSSK----------QQAEPVK 53
FS +R+ ++SDFIAP+ +C++ L+ T K ++PQV+ +K + + VK
Sbjct: 6 FSGVVRLSNVSDFIAPNLDCIIPLETRTVEKKNEEPQVNIRAKKTKNEENKPKEDKKSVK 65
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL 113
ISL DCLAC+GCITSAETV++E+QS L I K +I++SPQ+ SLA +P
Sbjct: 66 ISLADCLACNGCITSAETVLVEEQSFGRLLEGIRNSKMAVITISPQTITSLAVKLEKTPE 125
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K + +F + GVK + D+S +R A E + ++S P+LSS
Sbjct: 126 DLAKLIASFFRRHGVKYVLDSSFARQFAHSLAYEELLLT-----------PSTSRPLLSS 174
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
ACPG++CYAEK G ++P IS ++SPQ GA +K ++ +K G P +++H VMPC+D
Sbjct: 175 ACPGFVCYAEKSHGELLIPKISKIRSPQAISGAIVKGYLAKKEGLSPCDVFHAAVMPCFD 234
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KKLE+ E +R EG EI E D V++T E+L+ + + E +EE +
Sbjct: 235 KKLES------------REQFRVEGTEIRETDCVVSTAELLEELVKEEGVAEDVEEEEEN 282
Query: 294 KMLTNVDDEGHLYGV-AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
T++ G + G G+SGGYA+ + R G V L +N V
Sbjct: 283 NWTTSL-SRGIIIGEDGGASGGYADRIVRDFVAQNGGIVKTSKLN----KNMFSTTVEST 337
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G+ +L+ A YGF+N+QN+VRK+K +K +VEVMACP GC NGGGQ++ + +
Sbjct: 338 TTGEIVLRVAKVYGFRNVQNLVRKMKTKKEKTDYVEVMACPGGCANGGGQVRYETMDERE 397
Query: 413 ELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 472
+ + +E +Y A P N S+ +EW + K + T+Y PV ++ AQ
Sbjct: 398 KRLAQVEELY-----EALPRGNSWEESVREEW--KRLDTNYKNLLFTDYKPVETNV-AQT 449
Query: 473 HNW 475
W
Sbjct: 450 LKW 452
>gi|297273920|ref|XP_001113437.2| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Macaca
mulatta]
Length = 409
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 225/377 (59%), Gaps = 20/377 (5%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTRIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +
Sbjct: 99 SQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ P++I+HV V PCYDKKLEA +E F L
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPPALHGSRG-----------A 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ ++ ++ + S L K +D+ + A SS G+ +FRHAA
Sbjct: 203 DCVLTSGEIAQIMDQGDLSVKDAA-STLCKFGDLKEDKVTRHDGA-SSDGHLAHIFRHAA 260
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y
Sbjct: 261 KELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPY 319
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + ++ LY EW
Sbjct: 320 HFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHMQELYQEW 378
Query: 445 LEQPGSEKAKKHVHTEY 461
LE S KA++ +HT Y
Sbjct: 379 LEGINSPKAREVLHTTY 395
>gi|324509319|gb|ADY43923.1| Cytosolic Fe-S cluster assembly factor [Ascaris suum]
Length = 450
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/493 (33%), Positives = 273/493 (55%), Gaps = 61/493 (12%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVS--------TSSKQQAE-- 50
M E FS +RI ++SDFIAPSQ C++ L+K D P ++ SS ++A+
Sbjct: 1 MDEGFSGVVRISNVSDFIAPSQACILPLRK------DDPTINESLVSIRGKSSVERADGT 54
Query: 51 --PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHF 108
V++SL DCLAC+GCITSAETV++++QS L + ++++SPQS S+A
Sbjct: 55 SKKVRVSLNDCLACNGCITSAETVLIQEQSTPMLLQGLATCSVGVVTVSPQSVCSIAAKR 114
Query: 109 GISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
GI + + + K LGV+ + D+S R LTL + +EF+ R ++
Sbjct: 115 GIEAQKTARLIARHFKRLGVRYVLDSSFGRYLTLALSYDEFVERRHEA------------ 162
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+L+SACPG++CYAEK G ++P+IS V+SPQ +GA +K ++ + + PD+I+H TV
Sbjct: 163 PILTSACPGFVCYAEKTHGDLLVPHISRVRSPQAMMGALVKDYLARSISVEPDKIFHATV 222
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC+DKKLEA+R F + EVD VL+T EV L+ A + E
Sbjct: 223 MPCFDKKLEASRPQFANKC--------------REVDCVLSTAEVDKLLDEAAGDDENEV 268
Query: 289 ESPLD-KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFR 347
+ ++ L ++ + G SGGYAE + R + + ++ + +T + +
Sbjct: 269 DIAIEVNWLNAFENGIIIGSPGGPSGGYAEYIVR---RFISDSKVDRMIIRRTQKMKNLE 325
Query: 348 EVALEVEGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ + ++G++ LLK A CYGF+N+QN+V+ +K K +Y +VEVMACPSGC NGGGQI+ +
Sbjct: 326 AIEV-IDGESVLLKVAKCYGFRNIQNLVQMMKRGKAEYDYVEVMACPSGCANGGGQIRAE 384
Query: 407 PGQSPKELIKTLETIY---LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
++L+ ++ Y L N+ L + + + W + S++ +T Y
Sbjct: 385 KADMRQKLLDSVVDNYEMLLPNIKLENE-----IERVKTHW--ESLSDRFAGLCYTSYQI 437
Query: 464 VVKSITAQLH-NW 475
V +++ +++ W
Sbjct: 438 VDRNVIEKMNLRW 450
>gi|393217461|gb|EJD02950.1| iron hydrogenase [Fomitiporia mediterranea MF3/22]
Length = 634
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 179/524 (34%), Positives = 255/524 (48%), Gaps = 137/524 (26%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP----DKPQVST----------------- 43
FS L + DL+DFI PSQ C+ ++++ NP D+ ST
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVQQS---NPQTSRDEGAASTQIRIDSSGAYYEVSSTD 59
Query: 44 -----SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------K 90
+S ++ E +ISL DCLACSGCITSAE+V++ QS +E L+ + K
Sbjct: 60 ASDSKTSARKLETAQISLNDCLACSGCITSAESVLITMQSHEEVLNVLASNPSPICVDHK 119
Query: 91 AVIISLSPQSRASLAEHFG------ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
++S+SPQS ASLA ++ VF ++ F + LG + ++DT+ +R L L+E
Sbjct: 120 TPVLSISPQSLASLAATISSTSTNTVALAHVFHRVAAFARELGFEHVYDTTFARHLALLE 179
Query: 145 ACNEFIAR-YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
+EF R + + D E + LPML+SACPGW+CYAEK +LP+IS KSPQQ
Sbjct: 180 HAHEFHERKHGTTNGIDGEDAAGKLPMLASACPGWVCYAEKTHAE-MLPFISRTKSPQQV 238
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G +K+ + +K G +P++IYHVTVMPCYDKKLEA+R+DF L S +
Sbjct: 239 MGTLVKNWLSEKWGKKPNQIYHVTVMPCYDKKLEASRQDFYNDLYSTRD----------- 287
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKMLTNVDDE-------- 302
VD V+TTGE+ +++ + ++ L+ P L K D+E
Sbjct: 288 VDCVITTGELQRMMRERNWAWDLLKPVPGPSETGIEVETSLLSKSKAEEDEEDTIPIPKQ 347
Query: 303 ---GHLYGV---------AGSSGGYAETVFRHAAKT--LFGKVIEGHLEFKTIRNSDFRE 348
G Y + SSG Y ++ T L G+ E L + +R +DF E
Sbjct: 348 KSEGPSYSLTLPSLLLHPGSSSGSYLHSLLSTIQDTAHLSGQA-EPKLTIRQVRGADFEE 406
Query: 349 VALEV--EGKTLLKFALCYGFQNLQNIVRKV-------------------------KMRK 381
L GK + K A CYGF+NLQN+VR+V K R
Sbjct: 407 YLLRAPDTGKIVFKGARCYGFRNLQNVVRRVGRAAGVQVGRGAAGRLANVRAKTRIKRRT 466
Query: 382 CD------------------YQFVEVMACPSGCLNGGGQIKPKP 407
+ Y +VEVMACP GC+NGGGQ+ P P
Sbjct: 467 ANNSNGAIEGDNLEEEEDRPYDYVEVMACPGGCVNGGGQLPPLP 510
>gi|340507726|gb|EGR33647.1| nuclear prelamin A recognition factor, putative [Ichthyophthirius
multifiliis]
Length = 429
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 227/416 (54%), Gaps = 71/416 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL--KKATFKNPDKPQVSTSSKQQAEPVKISLKDCLAC 62
FS T++I +L D+IAPSQ+C++ K +N Q +K Q + KI+L DCLAC
Sbjct: 2 FSSTIKITNLDDYIAPSQDCILPFMDKNQKLQNIQDKQ-PIINKSQNQTAKITLSDCLAC 60
Query: 63 SGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTF 122
SGC+T+AE+++ ++QS+DEF++ K +IS+SPQSR SLA HFG+ + K LT F
Sbjct: 61 SGCVTTAESILQQQQSVDEFINKSQTFKHTVISISPQSRVSLAYHFGVDEFYIQKALTKF 120
Query: 123 LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYA 182
F+ Y + SLP+++S CPGW YA
Sbjct: 121 --------------------------FLQNY---------NTKVSLPIITSECPGWTLYA 145
Query: 183 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 242
EK +G +I+ ++S +KSPQQ +G +K QKLG+ +I VT+MPCYDKK+E+AR D
Sbjct: 146 EKAVGEFIIKHMSQIKSPQQLMGCLVKDLFAQKLGYNNQDILFVTIMPCYDKKVESARRD 205
Query: 243 FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE 302
F E+ +E P +++ L E + Q ++ + + L K+L
Sbjct: 206 F-------EKNQFNELYINPNIETYLMHDEYIQQQQQQSQ--QNQDTDFLLKVLE----- 251
Query: 303 GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH-LEFKTIRNSD-------------FRE 348
+ S Y + + R AA LF + + + ++ K +N+D F+E
Sbjct: 252 -----YSNGSNDYLDYIIRRAAFDLFQLLPDQYQIQNKQGKNTDFNVKYIIFTYIILFQE 306
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
+ ++ G+ +L FA YG +N+QNI R +KM KC +Q++E++ACPSGCLNGGGQ+K
Sbjct: 307 IFIQYNGQKILNFARIYGLRNIQNITRNIKMNKCQFQYIEILACPSGCLNGGGQLK 362
>gi|393235155|gb|EJD42712.1| iron hydrogenase [Auricularia delicata TFB-10046 SS5]
Length = 463
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 257/504 (50%), Gaps = 76/504 (15%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATF--KNPDKPQVSTSSK-------QQAEPVKIS 55
FS L + DL+DF+APSQ C+ ++ + P +++ S ++ + +I+
Sbjct: 3 FSSALTLTDLNDFLAPSQACIKPVEAPPLPAREPGAAEITIGSDGAYFESGKRLQQAQIT 62
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSN---INKGKAVIISLSPQSRASLAEHFGISP 112
L DCLACSGCITSAE+V++ QS DE L+ + G ++S+SPQ+ A+LA +
Sbjct: 63 LNDCLACSGCITSAESVLVAAQSADEVLNATRALPTGHVAVLSVSPQTLAALASSSSTTL 122
Query: 113 LQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
Q +T + +S L V ++FDT+ +R + E EF R + +N PML
Sbjct: 123 QQTLDSVTAWARSALRVNAVFDTTFARHIARHETVREFHER---------KAANVPGPML 173
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+ ACPGW+CYAEK G +LP +S+ +S Q +G +KH + +K G +P EIYH+TVMPC
Sbjct: 174 AGACPGWVCYAEKTHGQ-LLPLMSATRSAQAVMGVLVKHWLARKWGKKPSEIYHITVMPC 232
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
YDKKLEA+R DF ++ EVD VL+TGE+ L ++ V +
Sbjct: 233 YDKKLEASRPDFAPD-------------DVREVDCVLSTGELAQL--MRDVPADGPPAPS 277
Query: 292 LDKMLTNVDDEGHLYGVAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
LD D HL AG SSG + + AA+ G +++ H E RN+D+++
Sbjct: 278 LD------DSIPHLLTHAGTSSGSFLHALLADAAERHPGAILQ-HTE----RNADWQDYT 326
Query: 351 LEV-EGKTLLKFALCYGFQNLQNIVRKVKMRK---------------CDYQFVEVMACPS 394
L + +G + + A CYGF+N+QN+VR++K + Y FVEVMACP
Sbjct: 327 LSMPDGTPIFRGATCYGFRNIQNLVRRLKQKDKPVPARRRQTAAADAATYDFVEVMACPG 386
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSE 451
GC+ GGGQ+ + K +E +Y E+ + L R D W E G
Sbjct: 387 GCVAGGGQLVKG-----RAAAKDVEEVYWSSQEDAAALLEAEQLLTRIASDLWAEDNGER 441
Query: 452 KAKKHVHTEYHPVVKSITAQLHNW 475
K + T Y V + W
Sbjct: 442 --SKLLRTSYKAVESDVVGLGVKW 463
>gi|312079099|ref|XP_003142028.1| iron only hydrogenase large subunit domain-containing protein [Loa
loa]
gi|307762811|gb|EFO22045.1| cytosolic Fe-S cluster assembly factor [Loa loa]
Length = 447
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 270/478 (56%), Gaps = 45/478 (9%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ----QAEPVKISLKDCL 60
FS ++I ++SDFI PSQ C++ L+ + Q + SK+ V ++L DCL
Sbjct: 8 FSGIVKISNVSDFITPSQACILPLQSKQSDMKVRIQARSRSKKVNGDAVNKVVVTLNDCL 67
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLT 120
ACSGCITSAET+++++QS +FL + + ++++SPQS AS+A G + + +
Sbjct: 68 ACSGCITSAETILVKEQSKPKFLEGLASAQLSVMTVSPQSIASIAYKRGCQTSEAARLIA 127
Query: 121 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
K++G+K + D+S R LTL + +EF +E+ +R P+ + CPG++C
Sbjct: 128 GIFKNMGMKYVLDSSFGRLLTLSLSYDEF-------KEAHLQR-----PIFTGVCPGFVC 175
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK G+ ++P+IS V+SPQ +GA +K ++ +K +P++I+H +VMPC+DKKLEAAR
Sbjct: 176 YAEKTHGTLLIPHISRVRSPQAMMGALVKDYLARKFDVKPEKIFHASVMPCFDKKLEAAR 235
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300
S Y D EVD VL+TGEV D I + E+ S L ++
Sbjct: 236 --------SHSGNYSD----CREVDCVLSTGEV-DGILDEYNATESFFASEKVGWLNALE 282
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFK-TIRNSDFREVALEVEGKT-L 358
+ + GSSGGYAE + + F E LE K TI++ ++ E+ V+G+T +
Sbjct: 283 NGKVISSEGGSSGGYAEYIVKR-----FVAESEKPLELKRTIKDKNW-EIIEAVDGETKM 336
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 418
L A CYGF+N+Q V+K+K KCDY +VE+MACPSGC+NGGGQI+ G S +E K L
Sbjct: 337 LSVAKCYGFRNIQIHVQKLKRSKCDYDYVEIMACPSGCINGGGQIR---GASTEERKKIL 393
Query: 419 ETIYLENVMLADPFKNPLVRSLYDEW-LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
+ I L + L R + +EW + P ++T+Y+ V KS NW
Sbjct: 394 DAIELSCSDDNSEMEKELER-VKEEWSVLNP---DWMNLLYTKYYAVEKSAERISTNW 447
>gi|301612957|ref|XP_002935994.1| PREDICTED: nuclear prelamin A recognition factor [Xenopus
(Silurana) tropicalis]
Length = 370
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 207/335 (61%), Gaps = 19/335 (5%)
Query: 125 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 184
+L V + DT+ + D +++E +FI R+++ ++ DE + PM +SACPGW+ YAE+
Sbjct: 39 ALRVHHVLDTTIAADFSILETQRDFIQRFRR--QTQDEHA---FPMFASACPGWVQYAER 93
Query: 185 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 244
LG + P+I + KSPQQ +G+ +K + PD+I+H+ V PCYD+KLEA R+D+
Sbjct: 94 VLGDSVTPHICTAKSPQQIMGSLVKGYFASSKNLSPDKIFHLMVAPCYDRKLEALRDDYY 153
Query: 245 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 304
+L +VD VLT+GEV+ +++ K ++ + +EE PL+ + E
Sbjct: 154 TEL-----------FNCRDVDCVLTSGEVMQIMEQKNISVKEMEEIPLENVFGETSFE-F 201
Query: 305 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 364
+ SS GY VFRHAAK LF ++ + +K ++N DF EV+LE +G+T+L+FA
Sbjct: 202 VRHEGTSSDGYLAHVFRHAAKELFDMDVQ-EISYKALKNKDFLEVSLEKDGETVLRFAAA 260
Query: 365 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 424
YGF+N+QN+V K++ K Y FVEV+ACP GCLNG GQ + G+ + L+ +E +Y
Sbjct: 261 YGFRNIQNMVLKLRKGKFHYHFVEVLACPGGCLNGKGQAQSTEGKVERALLHEMEEVYT- 319
Query: 425 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
V + P NP +++LY++WL+ S+K ++ +HT
Sbjct: 320 RVPIQKPESNPHIQALYEDWLQGADSQKTRETLHT 354
>gi|118347026|ref|XP_001006990.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Tetrahymena thermophila]
gi|89288757|gb|EAR86745.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Tetrahymena thermophila SB210]
Length = 488
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/495 (32%), Positives = 247/495 (49%), Gaps = 134/495 (27%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL--KKATFKNPDKPQVSTSS----------KQQAEPV 52
FS T++I L D+I+PSQ C++ + K + K + P V K +
Sbjct: 2 FSGTIKIASLDDYISPSQECILPIFDKNSKLKTTEDPTVKAYGMIPQKPDLIKKTAKQTA 61
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
K++L DCLACSGC+T+AET++ ++QS++EFL + K ++ +S Q+RAS+A HFG+S
Sbjct: 62 KVTLSDCLACSGCVTTAETILQQQQSVEEFLLKLQSYKHAVVGISQQARASMAYHFGLSE 121
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ + LT F + D S+P+LS
Sbjct: 122 EHIQRALTYFFQ-----------------------------------DQLNVQQSVPVLS 146
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGW CYAEK +G +++PY+S VKSPQQ +G+ +K+ + K+G +I V+VMPCY
Sbjct: 147 SECPGWACYAEKAVGEFVIPYMSQVKSPQQVMGSLVKNSLASKMGIESKDILFVSVMPCY 206
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI-------------QL 279
DKK+E+AR++F E I +VD VLT E++DL+ Q+
Sbjct: 207 DKKVESARKEF-------------ERNGIKDVDVVLTAQEIMDLLKKVEGQKLVDVQEQI 253
Query: 280 KA----VNFEALEES-----------------PLDKM------LTNVDDEGHLYGVAGS- 311
K VN EES P + + ++N+ E +L+G + +
Sbjct: 254 KQAQTNVNNSNDEESKNELISKEREYIENNIFPYENLDISRIVVSNI--EEYLFGDSQTF 311
Query: 312 -----------------SGGYAETVFRHAAKTLFGKVIEGHL---EFKTI----RNSDFR 347
S Y + + R AA + HL +++ I +NSDF
Sbjct: 312 DQLLLPILSNIFDSTIGSNDYLDYIIRRAASDIH------HLNPDQYEIITKQGKNSDFN 365
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP-K 406
E+ L +G +L FA YG +N+QNI+R ++ KC Y ++E+MACPSGCLNGGGQ+K
Sbjct: 366 EIFLVKDGANILSFARVYGLRNIQNIIRNLRQNKCKYDYIEIMACPSGCLNGGGQLKSLD 425
Query: 407 PGQSPKELIKTLETI 421
K+LI+ L+ I
Sbjct: 426 ENMKTKDLIEKLQEI 440
>gi|335297201|ref|XP_003357967.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Sus
scrofa]
Length = 407
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 224/381 (58%), Gaps = 30/381 (7%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ ++ + + +S+ PQS A F +S ++L FLKSLGV +FD + + D +++E
Sbjct: 39 DASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ R+ Q E + +LPML+SACPGW+ YAE+ LG + P++ + +SPQQ +
Sbjct: 99 SQKEFVRRFHQHSEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIM 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ +K + ++ D I+HV V PCYD+KLEA +ED + + +R
Sbjct: 154 GSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED----VPTASPGFRG-------T 202
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+ +++ ++ + ++ LD + +V +E + A S G A +FRHAA
Sbjct: 203 DCVLTSGEIAQMMEQSDLS---VRDAALDTLFGDVREEVRRHDGASSDGCLAH-IFRHAA 258
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LF + + G L ++ +RN DF+EV LE GK LL+FA YGF+N+QN+V K+K + Y
Sbjct: 259 KELFDEDV-GELTYRALRNRDFQEVTLEKSGKVLLRFAAAYGFRNIQNVVLKLKRGRFPY 317
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNP----LVRSL 440
FVEV+AC GCLNG GQ + + G++ + L++ + ++ A P + P V+ L
Sbjct: 318 HFVEVLACAGGCLNGRGQAQTEDGRADRALLQRMRGVH-----AAGPGRTPETSAHVQDL 372
Query: 441 YDEWLEQPGSEKAKKHVHTEY 461
Y EWL+ + +A+ +HT +
Sbjct: 373 YREWLDGADAPRARGTLHTAH 393
>gi|308459710|ref|XP_003092170.1| CRE-OXY-4 protein [Caenorhabditis remanei]
gi|308254065|gb|EFO98017.1| CRE-OXY-4 protein [Caenorhabditis remanei]
Length = 457
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 164/492 (33%), Positives = 261/492 (53%), Gaps = 61/492 (12%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATF-KNPDKPQVSTSSK---------QQAEPVKI 54
FS +R+ ++SDFIAP+ +C++ L+ T K ++ +V+ +K + + +KI
Sbjct: 6 FSGVVRLSNVSDFIAPNLDCIIPLETRTVEKKIEESKVAIRAKKTVSENKPKEDKKSIKI 65
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
SL DCLAC+GCITSAETV++E+QS L I K ++++SPQ+ S+A SP
Sbjct: 66 SLADCLACNGCITSAETVLVEEQSFGRLLEGIRNSKMAVVTISPQAITSMAVKLKKSPQI 125
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ K+++ F GVK + D+S +R A E ++ +S P+LSSA
Sbjct: 126 IAKQISAFFHRHGVKYVLDSSFARRFAHSLAFEELVST-----------PTTSRPLLSSA 174
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++CYAEK G ++P IS ++SPQ GA +K ++ ++ P +++H VMPC+DK
Sbjct: 175 CPGFVCYAEKSHGELLIPKISKIRSPQAISGAIVKGYLAKRENLSPCDVFHAAVMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ-LKAVNFEALEE-SPL 292
KLEA+RE RD EI E D V++T E+L+ IQ ++ + E +E+
Sbjct: 235 KLEASREQL---------KVRD--TEIRETDCVVSTAELLEEIQKMEDQDSEDVEKRGEE 283
Query: 293 DKMLTNVDDEGHLYGV-AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 351
++ N +G + G G+SGGYA+ + + G V L N + +
Sbjct: 284 EEEWMNALGKGIIIGEDGGASGGYADRIVHDFVEKNGGIVKTTKL------NKNMYSTIV 337
Query: 352 EV--EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
E G +L+ A YGF+N+QN+VRK+K +K +VEVMACP GC NGGGQ++ +
Sbjct: 338 ESPESGDVILRVAKVYGFRNVQNLVRKMKTKKEKTDYVEVMACPGGCANGGGQVRYETMA 397
Query: 410 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSE------KAKKHVHTEYHP 463
+E + +E Y + L R + W+E+ +E + + T+Y P
Sbjct: 398 EREEKLIDVEREY-----------DDLPRGIGMNWVEKVKTEWEGLDGNYRNLLFTDYKP 446
Query: 464 VVKSITAQLHNW 475
V ++ Q W
Sbjct: 447 VETNV-GQTLKW 457
>gi|449546957|gb|EMD37926.1| hypothetical protein CERSUDRAFT_123742 [Ceriporiopsis subvermispora
B]
Length = 581
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 173/473 (36%), Positives = 245/473 (51%), Gaps = 86/473 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ----------------- 47
FS L + DL+DFI PSQ C+ ++++ P + + Q
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQSNPAPVHDPGAALTQIQVDSTGSYYEVSAVGRTD 62
Query: 48 ----QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------KAVIIS 95
+ + +ISL DCLACSGCITSAE+V++ QS E L+ + + ++S
Sbjct: 63 VDAKKLQTAEISLNDCLACSGCITSAESVLITLQSHTEVLNFLESNPILPAAAHRTPVLS 122
Query: 96 LSPQSRASLAEHFG------ISPLQVFKKLTTF-LKSLGVKSIFDTSCSRDLTLIEACNE 148
++PQS ASLA + P +V ++ F ++ LG + +FDT+ +R + L+E E
Sbjct: 123 IAPQSLASLAAALSSSSARPVGPAEVLARVRAFAIRVLGFEHVFDTTFARHIALLEHARE 182
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
F R + E+ + LPML+SACPGW+CYAEK +LP+IS+ KSPQQ +G +
Sbjct: 183 FSERRSGKGK---EKGVAPLPMLASACPGWVCYAEKTHAE-MLPFISAAKSPQQVMGTLV 238
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K + K G PD+IYHVTVMPCYDKKLEA+REDF +TY +VD V+
Sbjct: 239 KEWMGAKWGRTPDQIYHVTVMPCYDKKLEASREDFC------NDTYATR-----DVDCVI 287
Query: 269 TTGEVLDLIQLKAVNFEAL---EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 325
TTGE+ L++ K + A E SP L + L SSG Y ++ AA
Sbjct: 288 TTGELDLLMREKGWDLSAPIPEELSPPSPSLNPLAIPELLAHPGSSSGSYLHSLI--AAL 345
Query: 326 TLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYGFQNLQNIVRKV------- 377
+ H +T+RNSD+ E ++ G T+ + A CYGF+NLQN+VRKV
Sbjct: 346 VASSQTPLTHT-VRTLRNSDYEEHTVMDESGATVFRGARCYGFRNLQNLVRKVGREAGLQ 404
Query: 378 -------------KMRKC--------DYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ RK Y +VEVMACP GC+NGGGQ++P GQ
Sbjct: 405 VGRGAAGRVGALRRARKAGPESEQEKGYDYVEVMACPGGCVNGGGQLRPMLGQ 457
>gi|133778355|gb|AAI23769.1| MGC143399 protein [Bos taurus]
Length = 362
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 146/336 (43%), Positives = 200/336 (59%), Gaps = 50/336 (14%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-------------QVST-SSK 46
M+ FS L++ DL DFIAPSQ+C+ +K + P QVS
Sbjct: 1 MASPFSGALQLTDLDDFIAPSQDCIKPMK--VDRRPGSGVAKIHIEDDGSYFQVSQDGGM 58
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA--------VIISLSP 98
++ E KISL DCLACSGC+TSAETV++ +QS +E + K V+IS+SP
Sbjct: 59 KKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSP 118
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF+ R++ +
Sbjct: 119 QSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQREFVRRFRG--Q 176
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+ +K Q+
Sbjct: 177 ADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGSLVKDFFAQQQHL 233
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD++YH TVMPCYDKKLEA+R DF SQE RD VD V+TTGEV L++
Sbjct: 234 TPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVITTGEVFKLLE 282
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
+ V+ LE +PLD LY + G GG
Sbjct: 283 EEGVSLSELEPAPLDS----------LYVITGPVGG 308
>gi|344250196|gb|EGW06300.1| Nuclear prelamin A recognition factor [Cricetulus griseus]
Length = 331
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 204/335 (60%), Gaps = 22/335 (6%)
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
V +FDT+ + D +++E+ EF+ RY + E E LPML+SACPGW+ YAE+ LG
Sbjct: 4 VHYVFDTTIAADFSILESQKEFVRRYHRHSEEQRE-----LPMLTSACPGWVRYAERVLG 58
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
++P++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA RE L
Sbjct: 59 RPVIPHLCTAKSPQQIMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLSTTL 118
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 307
+ T D VLT+GE+ +++ + +++++ +D + +V +E ++
Sbjct: 119 NGARGT-----------DCVLTSGEIAQIMEQSDL---SVKDTAVDTLFGDVKEEVAVWR 164
Query: 308 VAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 366
G SS G+ VFRHAAK LFG+ IE + ++ +RN DF EV LE G+ LL+FA YG
Sbjct: 165 HDGVSSDGHLAHVFRHAAKELFGEHIE-EINYRALRNKDFHEVTLEKNGEVLLRFAAAYG 223
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 426
F+N+QN++ K+K K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY +
Sbjct: 224 FRNIQNMILKLKKGKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SGI 282
Query: 427 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ P + V LY +WLE S K ++ +HT Y
Sbjct: 283 PVRPPESSAHVEELYQQWLEGTESPKVQEVLHTTY 317
>gi|388581203|gb|EIM21513.1| iron hydrogenase, partial [Wallemia sebi CBS 633.66]
Length = 519
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 188/552 (34%), Positives = 272/552 (49%), Gaps = 116/552 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKN-----PDKPQVSTS---------SKQQAE 50
FS L+I DL+DFI+P Q C+ +K+ PD P + Q+ E
Sbjct: 3 FSGGLQITDLNDFISPGQECIKPVKETNKPKQEEVAPDAPTTEITIGENGEYYEQNQKLE 62
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQS---LDEFLSNINKGKAVIISLSPQSRASLAEH 107
+I+L DCLACSGCITSAETV++E QS + ++LS N K +I S+SPQS AS++
Sbjct: 63 KAEITLNDCLACSGCITSAETVLIESQSHLEVKKYLSKDNDKKTMIASISPQSLASISAS 122
Query: 108 FGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
P + ++L LKS+G +FDT+ SR L+L+E NEF + SN
Sbjct: 123 LSSRPSNEVLLRRLRHHLKSIGFDYVFDTTFSRHLSLLEILNEF----------NSLDSN 172
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225
+ L +L+SACPGWICY EK G ++P+IS+ KSPQQ +G+ +K+ Q++ +IYH
Sbjct: 173 NRL-LLTSACPGWICYVEKTHGE-LIPFISTTKSPQQVMGSLVKYWFSQRINKSASDIYH 230
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
VT+MPCYDKKLEA+R+DF L + +VD VLT+GE+ L K +N
Sbjct: 231 VTIMPCYDKKLEASRQDFYSDL-----------YQTRDVDCVLTSGELGSLFD-KPIN-- 276
Query: 286 ALEESPLDKMLTNVDDE---GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
L ES ++ + + +++ H+ SSG Y E + +T +E H + R
Sbjct: 277 -LNESLPNENIVSTEEKLIPHHIQHPGTSSGSYLENIMTLIKQTTPNLRLETH----SPR 331
Query: 343 N-SDFREVALEVE-GKTLLKFALCYGFQNLQNIVRKVKMRKC------------------ 382
N +D E L E + + K + CYGF+N+QN+VRKV K
Sbjct: 332 NLADSVEYLLINENNECVFKGSKCYGFKNIQNLVRKVGKEKGLNSGRGAAGRMAGRGRVR 391
Query: 383 -----------DYQFVEVMACPSGCLNGGGQIKP-----KPGQ----------------- 409
FVEVMACPSGC+NGGGQ+KP K G
Sbjct: 392 TRNTGNPHDSKSLDFVEVMACPSGCINGGGQLKPGINTDKEGHERDWESEGVATDPTKNI 451
Query: 410 ------SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ K I +E IY + ++ + E L+ E +K+H+ T+YH
Sbjct: 452 EESVRWTTKNWINRVEDIYWTGSEASKAVTLEMLSKISTEMLK----ELSKEHLRTQYHA 507
Query: 464 VVKSITAQLHNW 475
+ + W
Sbjct: 508 IESDTSGLAVQW 519
>gi|424513093|emb|CCO66677.1| unnamed protein product [Bathycoccus prasinos]
Length = 603
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 169/495 (34%), Positives = 257/495 (51%), Gaps = 94/495 (18%)
Query: 14 LSDFIAPSQNCVVSLK---------------------------KATFKNPDKPQVSTS-- 44
L+D+IAPSQ C++ L K +N + V+
Sbjct: 62 LNDYIAPSQACIIPLSSDGNTLLVNDGLHDAGEGDGGEILLRAKRGAENKKRFDVAKEDF 121
Query: 45 SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS-------NIN---------- 87
SK +K+SL DCLACSGC+TSAETV++E+QS++EFL NI
Sbjct: 122 SKDGKSMIKVSLSDCLACSGCVTSAETVLMEQQSVEEFLGQNFSSEGNIQPVGGTHDRGR 181
Query: 88 ----KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTL 142
+ + ++++LSPQS ASLA + + ++ +K+ F K+ +++ ++ +R +
Sbjct: 182 GGGGRRRRLVVTLSPQSTASLAVKYSVKYEEMLEKMCGFFKTHFNARAVCSSTEARAASR 241
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQ 201
EF R +S+ LPM++SACPGW+CYAEK + + ++ KSPQ
Sbjct: 242 ARYAKEFTER--------KSKSSGLLPMIASACPGWVCYAEKTENALRDVNLLAKAKSPQ 293
Query: 202 QTIGATIKHHICQKLGFRPD----------EIYHVTVMPCYDKKLEAAREDFVFQL--DS 249
G K ++ F D E YHV+VMPC+DKKLEA+R +F + D
Sbjct: 294 AIAGTFAKKG--RRAAFSEDTEEEEEEEEEEAYHVSVMPCFDKKLEASRREFKTKREGDV 351
Query: 250 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA-----VNFEALEESPLDKM--------- 295
+ D+ + E D VLTT EV++L++ K +L + +D M
Sbjct: 352 LGQGKDDDVDGVNETDCVLTTTEVVELLEKKCNIVDEAGVRSLPSAKIDSMFASWFRTED 411
Query: 296 LTNVDDEGHLYGV-----AGSSGGYAETVFRHAAKTLFGKVIEGH-LEFKTIRNSDFREV 349
+ +V+++ + A +SG Y E VFR AA+ L+G + G LE+KT+ N+D REV
Sbjct: 412 MMDVEEDEQEDALLPPAFAATSGAYLEYVFRKAARDLYGVDLRGKDLEYKTLTNADMREV 471
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
L++EG+ LKF L YGF+N+QN+ R +K + FVE+MACPSGC NGGGQ+ PK
Sbjct: 472 ELKIEGEVKLKFLLAYGFRNVQNVTRALKREPNKWDFVEMMACPSGCANGGGQVPPKQSY 531
Query: 410 SPKELIKTLETIYLE 424
+L+K +E Y+E
Sbjct: 532 LNAKLLKRVEEAYME 546
>gi|392593884|gb|EIW83209.1| iron hydrogenase [Coniophora puteana RWD-64-598 SS2]
Length = 618
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 165/498 (33%), Positives = 243/498 (48%), Gaps = 113/498 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK--------------------------ATFKN-PD 37
FS L + DL+DFI PSQ C+ +++ KN P
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQLNKPEEILEPGAASTEIRIDSSGSYYEVAKNEPS 62
Query: 38 KPQ-VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------- 89
+P V + + + + +ISL DCLACSGCITSAE+V++ QS E L+ +
Sbjct: 63 RPSTVPQNPENKLQQAQISLNDCLACSGCITSAESVLITLQSHTEVLAFLASNPPPASAA 122
Query: 90 -KAVIISLSPQSRASLAEHFG------ISPLQVFKKLTTFLK-SLGVKSIFDTSCSRDLT 141
K ++S++PQ+ ASLA ++P Q+ +++ F + +LG + ++DT+ +R L
Sbjct: 123 HKVPVLSIAPQTLASLAASVSSGSRAPVAPRQILRRVAAFAREALGFERVYDTTFARHLA 182
Query: 142 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
L E E+ R + + + LPML+SACPGWICYAEK +LP+I+ KSPQ
Sbjct: 183 LREHVQEYFERRDGAGQDGSGSGSGKLPMLASACPGWICYAEKAHAE-MLPFIARTKSPQ 241
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
Q +G +K + K G RPDE+YHV VMPCYDKKLEA+R+DF +L +
Sbjct: 242 QVMGTLVKAWLAPKWGKRPDEVYHVAVMPCYDKKLEASRQDFYSELYATR---------- 291
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV----------DDEGHLYGV--- 308
+VD V+TTGE+ L++ K + E + + + DD+ L +
Sbjct: 292 -DVDCVITTGELELLMREKGWDLSVPVEHEDEPLPLSSSSSSPSLGTPDDDAALPELLTH 350
Query: 309 -AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE--GKTLLKFALCY 365
SSG Y + + + + + L KT+R +D+ E AL G + + A CY
Sbjct: 351 PGTSSGSYLHALIDAVTRAVAPEPVA--LSVKTVRTADYAEYALARRDTGTVVFRGATCY 408
Query: 366 GFQNLQNIVRKVKM--------------------------------------RKCDYQFV 387
GF+NLQN+VR+V R DY V
Sbjct: 409 GFRNLQNVVRRVGREAGVRVGRGAAGRMAGARVRRRGGAAAATTGSGGGEEDRGLDY--V 466
Query: 388 EVMACPSGCLNGGGQIKP 405
EVMACP GC+NGGGQ++P
Sbjct: 467 EVMACPGGCVNGGGQLRP 484
>gi|301103566|ref|XP_002900869.1| nuclear prelamin A recognition factor-like protein [Phytophthora
infestans T30-4]
gi|262101624|gb|EEY59676.1| nuclear prelamin A recognition factor-like protein [Phytophthora
infestans T30-4]
Length = 380
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 217/387 (56%), Gaps = 74/387 (19%)
Query: 11 IGDLSDFIAPSQNCV------------------------VSLKKATFK--NPDKPQVSTS 44
+GDL+D+I PSQ CV L A F P KP + +
Sbjct: 6 LGDLNDYIQPSQACVNPLFTSDKSESNGSSNGLAKITLETELSAADFAVPQPVKPNIIRT 65
Query: 45 SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRA 102
+ Q E ISL DCLACSGC+TSAETV++ +QS E L + + K V+++LSPQSRA
Sbjct: 66 TTQ--EKATISLDDCLACSGCVTSAETVLISQQSFKEMLDVLATKEHKRVVVTLSPQSRA 123
Query: 103 SLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 162
SLA HF + + V +KL T ++LGV + D++CS D L+E+ EF+ RY+ Q++
Sbjct: 124 SLAAHFEMPVVAVHRKLVTLFRNLGVTLVIDSTCSGDFALLESRAEFLHRYRNHQKTIWA 183
Query: 163 RSNSS--------------------------LPMLSSACPGWICYAEKQLGSYILPYISS 196
R SS +PML+S+CPGWICYAEK + I P+I +
Sbjct: 184 RPPSSVAVSSAKTEFLEPSTTANPLQDPLRAMPMLASSCPGWICYAEKSQPNAI-PFIDT 242
Query: 197 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 256
KSPQQ G+ IK + + G +P E+YHV VMPC+DKKLEA+R+DF D+++ T
Sbjct: 243 TKSPQQIAGSIIKRFVSGEHGVKPSEVYHVAVMPCFDKKLEASRKDF---QDAEDATK-- 297
Query: 257 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE---ESPLDKMLTNVDDEG-HLYGVA--G 310
+VD VL T E+++LI+ V+F +LE +P + ML+ V ++G + G +
Sbjct: 298 ------DVDCVLATTEIIELIESLNVDFASLELATLTPEEVMLSGVSEDGSSVLGSSQNA 351
Query: 311 SSGGYAETVFRHAAKTLFGKVIEGHLE 337
SSGG+ E +FR+AAK LF + G L+
Sbjct: 352 SSGGHLEHIFRYAAKELFNVDVNGPLD 378
>gi|358059435|dbj|GAA94841.1| hypothetical protein E5Q_01495 [Mixia osmundae IAM 14324]
Length = 620
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 175/527 (33%), Positives = 248/527 (47%), Gaps = 134/527 (25%)
Query: 9 LRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK---------------------- 46
L + DL+D++ PSQ C+ + + PD Q+S+ SK
Sbjct: 4 LTLSDLNDYLGPSQICIKPVNEIIDPTPDPAQISSESKAWAATEIRLDEPTGHYYEIESR 63
Query: 47 -------------------QQAEPVK---ISLKDCLACSGCITSAETVMLEKQSLDEFLS 84
QQ +K I+L DCLACSGCITSAE+V++ QS E +
Sbjct: 64 GKDKGGDQSAGALGVTGLQQQGNKLKKAEITLNDCLACSGCITSAESVLVNLQSHTEVYT 123
Query: 85 NINKGKAVII---SLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKSIFDTSCSRDL 140
+ + I+ S+SPQS ASL+ + +SP + F L F K +LG +FDT +R+L
Sbjct: 124 VLQEQADDIVPVLSISPQSIASLSVLYSVSPQRTFNALARFFKRTLGFALVFDTDYAREL 183
Query: 141 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 200
+L + E + R+ QS D ++ LP+L+SACPGWICYAEK G +LP+IS+VKSP
Sbjct: 184 SLAQGRREVLERW-QSNAQADTGAHLPLPLLASACPGWICYAEKTHGE-LLPFISAVKSP 241
Query: 201 QQTIGATIKHHICQKLGF------------RPD---EIYHVTVMPCYDKKLEAAREDFVF 245
QQ G+ IK ++ + RP IYHV+VMPC+DKKLEA+R DF
Sbjct: 242 QQIAGSLIKQYLVTRPHVEALLNTTSASEERPRGRRRIYHVSVMPCFDKKLEASRPDFAD 301
Query: 246 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF-------EALEESPLDKMLTN 298
+ + + VD VLTTGEV ++Q V+ A++ +
Sbjct: 302 PITGERD-----------VDCVLTTGEVHKMLQDHNVDLSSGDAERNAMQMDGDASSTSE 350
Query: 299 VDDE----GHLYGVAGSSGGYAETVFRHAAKTL-FGKVIEGHLEFKTIRNSDFREVALEV 353
++DE + SSGGY R A +L + HLE + +R D+ E L
Sbjct: 351 IEDELLPRFTSSALGTSSGGYLFNALRAVAASLPSDQQSMLHLESRAVRGEDYIEYRLLF 410
Query: 354 EGKTLLKFALCYGFQNLQNIVRKV-------------------------------KMRKC 382
G + + A CYGF+NLQN+VRKV + R+
Sbjct: 411 NGALIFRAAKCYGFRNLQNVVRKVGKDKGLAIGHGAARGSMEGPRARSKGLAAVRRARRN 470
Query: 383 D---------------YQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
D Y F+EVMACPSGC+NGGGQ+ P + +L
Sbjct: 471 DRAGAREVVVDAAERSYDFIEVMACPSGCVNGGGQLPPSSARDHMQL 517
>gi|392569939|gb|EIW63112.1| iron hydrogenase [Trametes versicolor FP-101664 SS1]
Length = 620
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 180/500 (36%), Positives = 244/500 (48%), Gaps = 123/500 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----------------QVSTSSKQQ 48
FS L + DL+DFI PS C+ +++ P +VS +SKQ
Sbjct: 3 FSGALTLTDLNDFITPSLACIKPVEQTNKPEPQDAGAAATEIQVDSSGLYYEVSATSKQT 62
Query: 49 A-----------EPVKISLKDCLACSGCITSAETVMLEKQSLDEFL--------SNINKG 89
A +ISL DCLACSGCITSAE+V++ QS E L S
Sbjct: 63 ATQTGKDTKQKLATAEISLNDCLACSGCITSAESVLITMQSHTEVLNFLENNPPSTSQDH 122
Query: 90 KAVIISLSPQ------SRASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTL 142
K +IS++PQ + S +S LQV +++T F +S LG ++DT+ +R ++L
Sbjct: 123 KVPVISIAPQCLASLAASISSTSSQTLSLLQVLRRVTAFCQSALGFAHVYDTTFARHISL 182
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
+E EF R K + LPML+SACPGW+CYAEK S +LPYIS KSPQQ
Sbjct: 183 LEHAKEFAERKK---------GDGKLPMLASACPGWVCYAEKTH-SEMLPYISQTKSPQQ 232
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 262
+G +K + K G +PD+IYHVTVMPCYDKKLEA+R+DF ++ S RD
Sbjct: 233 VMGTLVKEWLGAKWGKQPDQIYHVTVMPCYDKKLEASRQDFYSEVYST----RD------ 282
Query: 263 EVDSVLTTGEVLDLIQLKA------VNFEALEESP----LDKMLTNVDDEGHLYGV---- 308
VD V+TTGE+ L+Q K V E L P +D + N + G +G+
Sbjct: 283 -VDCVITTGELQLLMQDKGWELSMPVPDENLPPRPHPTAIDAAM-NATNTGADHGLPELL 340
Query: 309 ---AGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFA 362
SSG Y ++ T V+E L KT+R +D+ E L G + + A
Sbjct: 341 MHPGTSSGSYMHSLISTLTSTAADPSVLE--LSTKTVRTADYEEYTLTDRSTGAVVFRGA 398
Query: 363 LCYGFQNLQNIVRKVK-------------------------------------MRKCDYQ 385
CYGF+NLQN+VRKV + Y
Sbjct: 399 KCYGFRNLQNVVRKVGREAGVQVGRGAAGRMAGLRARGRAVRRGGTAGTEGAPQEERGYD 458
Query: 386 FVEVMACPSGCLNGGGQIKP 405
+VEVMACP GC+NGGGQ++P
Sbjct: 459 YVEVMACPGGCVNGGGQLRP 478
>gi|353234303|emb|CCA66329.1| related to NAR1-similarity to human nuclear prelamin A recognition
factor [Piriformospora indica DSM 11827]
Length = 565
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 174/489 (35%), Positives = 243/489 (49%), Gaps = 113/489 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDK--------------------PQVS 42
FS + + DL+DFI PSQ C+ V +KKA + P+ +
Sbjct: 3 FSGAVTLTDLNDFITPSQACIKPVEVKKAPISDAKGAALTDIRVDDTGAYYEVEIGPKAT 62
Query: 43 TSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------KAVII 94
+ Q+ +ISL DCLACSGCITSAE+V++ QS +E +S + K ++
Sbjct: 63 GAPSQKLTKAEISLNDCLACSGCITSAESVLITMQSHEEVMSFLQSNPPPGDPDHKIPVL 122
Query: 95 SLSPQSRASL-----AEHFGISPLQ--VFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEAC 146
S+SPQS ASL A+ SP V + F + LG + +FDT+ +R + L
Sbjct: 123 SISPQSLASLCSVSRAKSSSGSPSMRGVLDSVKAFASAELGFEHVFDTTFARHMAL---- 178
Query: 147 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
E I Y++ + + SLPML+SACPGWICYAEK +LP+IS KSPQQ +G
Sbjct: 179 REHILEYEERSAAFKNKEEGSLPMLASACPGWICYAEKAHAE-MLPFISRTKSPQQVMGT 237
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K + +KL R IYHVTVMPCYDKKLEA+R+DF E YR +VD
Sbjct: 238 LVKEWLGRKLQKR--RIYHVTVMPCYDKKLEASRQDFY------NEQYRTR-----DVDC 284
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVFRHAA- 324
VLTTGE+ +L+ +K N + SP + D L+ G SSGG+ + + H
Sbjct: 285 VLTTGELENLMSIKRWNSDHQNHSPALETFGIPD----LFMPPGSSSGGWLQVIIDHIVE 340
Query: 325 -KTLFGKVIEGHLEFKTIRNSDFREVALEV-----EGKTLLKFALCYGFQNLQNIVRKVK 378
+ L G+ ++ KTIR SD+ +V +E + + + + A CYGF+NLQN+VRKV
Sbjct: 341 RERLQGRTC--NIRTKTIRTSDYEDVVVEAVNQFNQTEVVFRGAKCYGFRNLQNVVRKVA 398
Query: 379 MRKC-------------------------------------------DYQFVEVMACPSG 395
Y +VEVMACP+G
Sbjct: 399 KEAGVKGSGSAGRATRGRVTGVTAALRARRARKGEEALTQTELGDDRPYDYVEVMACPAG 458
Query: 396 CLNGGGQIK 404
C+NGGGQ +
Sbjct: 459 CVNGGGQAR 467
>gi|344291276|ref|XP_003417362.1| PREDICTED: nuclear prelamin A recognition factor-like [Loxodonta
africana]
Length = 572
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 216/377 (57%), Gaps = 31/377 (8%)
Query: 85 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+ ++ + + +S+ PQS A F +S ++L FLKSLGV+ +FDT+ + D +++E
Sbjct: 39 DTSEHRVLAVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVRYVFDTTIAADFSILE 98
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+ EF+ RY E +LPML+SACPGW+ YAE+ LG+ P + ++
Sbjct: 99 SQKEFVRRYLGHSED-----KQALPMLTSACPGWVRYAERVLGTLCAPVPTGYSFRPISL 153
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
+ PD I+HV V PCYDKKLEA RED Q ++ +G V
Sbjct: 154 SPNLS----------PDGIFHVIVGPCYDKKLEALREDV------QAASHTSQG-----V 192
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D VLT+GE+L +++ ++ ++E+ +D + ++ +E SS GY VFRHAA
Sbjct: 193 DCVLTSGELLQIMEQSELS---VKEAAVDTLFGDLKEEEVRRHDGASSDGYLAHVFRHAA 249
Query: 325 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
K LFG+ +E + + +RN DF+EV LE EG+ +L+FA YGF+N+QN++ K+K K Y
Sbjct: 250 KELFGEDVE-KVTCRALRNKDFQEVTLEKEGEVVLRFAAVYGFRNIQNMILKLKKGKFPY 308
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 444
FVEV+ACP GCL+G GQ + + G K L++ +E IY ++ + P + V+ LY EW
Sbjct: 309 HFVEVLACPGGCLHGRGQAQAEDGHVDKALLRQMEGIY-ADIPVRPPETSEHVQMLYREW 367
Query: 445 LEQPGSEKAKKHVHTEY 461
L + ++ +HT +
Sbjct: 368 LHGADPPRVQEALHTSF 384
>gi|19075809|ref|NP_588309.1| iron hydrogenase (predicted) [Schizosaccharomyces pombe 972h-]
gi|74626311|sp|Q9Y7N7.1|NAR1_SCHPO RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1 homolog;
AltName: Full=Nuclear architecture-related protein 1
homolog
gi|4581520|emb|CAB40177.1| iron hydrogenase (predicted) [Schizosaccharomyces pombe]
Length = 538
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 173/541 (31%), Positives = 266/541 (49%), Gaps = 105/541 (19%)
Query: 9 LRIGDLSDFIAPSQNCV--VSLKKATFKNPDKP------QVSTSSKQQAE--PVKISLKD 58
L + DL+DF++P C+ +KK KN + +V+ + + +E ISL D
Sbjct: 4 LSVNDLNDFLSPGAVCIKPAQVKKQESKNDIRIDGDAYYEVTKDTGETSELGIASISLND 63
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKA---VIISLSPQSRASLAEHFGISPLQV 115
CLACSGCITSAETV++ QS E L ++ K+ + +SLSPQ RA+LA ++G+S ++
Sbjct: 64 CLACSGCITSAETVLVNLQSYQEVLKHLESRKSQEILYVSLSPQVRANLAAYYGLSLQEI 123
Query: 116 FKKL-TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS---------- 164
L F+ LG +I DT+ SR++ L + EF + QS+ ++
Sbjct: 124 QAVLEMVFIGKLGFHAILDTNASREIVLQQCAQEFCNSWLQSRAHKNQNQVTNSVVNEHP 183
Query: 165 ------------------------NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 200
N+ LP+LSS+CPGWICY EK S ++P +S V+SP
Sbjct: 184 LIPHSTSQISGVHSNTSSNSGINENAVLPILSSSCPGWICYVEKT-HSNLIPNLSRVRSP 242
Query: 201 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 260
QQ G +K Q+ + ++++H+++MPC+DKKLEA+R++F E RD
Sbjct: 243 QQACGRILKDWAVQQFSMQRNDVWHLSLMPCFDKKLEASRDEF------SENGVRD---- 292
Query: 261 IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY-------GVAGSSG 313
VDSVLT E++++ + ++ L ++P+ + D Y + SSG
Sbjct: 293 ---VDSVLTPKELVEMFKFLRIDPIELTKNPI-PFQQSTDAIPFWYPRITYEEQIGSSSG 348
Query: 314 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE--VEGKTLLKFALCYGFQNLQ 371
GY V +AAK LFG G +N D E L + L+ A CYGF+N+Q
Sbjct: 349 GYMGYVLSYAAKMLFGIDDVGPYVSMNNKNGDLTEYTLRHPETNEQLISMATCYGFRNIQ 408
Query: 372 NIVRKV----KMRK--------------------CDYQFVEVMACPSGCLNGGGQIKPKP 407
N+VR+V +RK Y +VEVMACP GC+NGGGQ+ P P
Sbjct: 409 NLVRRVHGNSSVRKGRVLLKKRVRSNAQNPTEEPSRYDYVEVMACPGGCINGGGQL-PFP 467
Query: 408 G----QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
S ++ ++ +E +Y E + V + ++W++ P K +HT Y
Sbjct: 468 SVERIVSARDWMQQVEKLYYEPGTRS--VDQSAVSYMLEQWVKDP--TLTPKFLHTSYRA 523
Query: 464 V 464
V
Sbjct: 524 V 524
>gi|259511472|sp|A8XZU0.2|NARF_CAEBR RecName: Full=Probable cytosolic Fe-S cluster assembly factor oxy-4
Length = 439
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 251/483 (51%), Gaps = 61/483 (12%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATF-KNPDKPQVSTSSK----------QQAEPVK 53
FS +R+ ++SDFIAP+ +C++ L+ T K ++PQV+ +K + + VK
Sbjct: 6 FSGVVRLSNVSDFIAPNLDCIIPLETRTVEKKNEEPQVNIRAKKTKNEENKPKEDKKSVK 65
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL 113
ISL DCLAC+GCITSAETV++E+QS L I K +I++SPQ+ SLA +P
Sbjct: 66 ISLADCLACNGCITSAETVLVEEQSFGRLLEGIRNSKMAVITISPQTITSLAVKLEKTPE 125
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K + +F + GVK + D+S +R A E + ++S P+LSS
Sbjct: 126 DLAKLIASFFRRHGVKYVLDSSFARQFAHSLAYEELLLT-----------PSTSRPLLSS 174
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
ACPG++CYAEK G ++P IS ++SPQ GA +K ++ +K G P +++H VMPC+D
Sbjct: 175 ACPGFVCYAEKSHGELLIPKISKIRSPQAISGAIVKGYLAKKEGLSPCDVFHAAVMPCFD 234
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KKLE +R L T E+L+ + + E +EE +
Sbjct: 235 KKLE----------------HRGNS---------LGTAELLEELVKEEGVAEDVEEEEEN 269
Query: 294 KMLTNVDDEGHLYGVAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
T++ G + G G +SGGYA+ + R G V L +N V
Sbjct: 270 NWTTSL-SRGIIIGEDGGASGGYADRIVRDFVAQNGGIVKTSKLN----KNMFSTTVEST 324
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G+ +L+ A YGF+N+QN+VRK+K +K +VEVMACP GC NGGGQ++ + +
Sbjct: 325 TTGEIVLRVAKVYGFRNVQNLVRKMKTKKEKTDYVEVMACPGGCANGGGQVRYETMDERE 384
Query: 413 ELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 472
+ + +E +Y A P N S+ +EW + K + T+Y PV ++ AQ
Sbjct: 385 KRLAQVEELY-----EALPRGNSWEESVREEW--KRLDTNYKNLLFTDYKPVETNV-AQT 436
Query: 473 HNW 475
W
Sbjct: 437 LKW 439
>gi|50545922|ref|XP_500499.1| YALI0B04532p [Yarrowia lipolytica]
gi|74635710|sp|Q6CFR3.1|NAR1_YARLI RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|49646365|emb|CAG82726.1| YALI0B04532p [Yarrowia lipolytica CLIB122]
Length = 491
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 162/476 (34%), Positives = 241/476 (50%), Gaps = 90/476 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA------------EPV 52
S L DL+DFI+P C+ +K K + ++ ++ QA EP
Sbjct: 1 MSSILSADDLNDFISPGAVCIKPIK--VDKTTENAEIEIGAQGQALEVGIDGTQKELEPA 58
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK--------GKAVIISLSPQSRASL 104
++SL DCLACSGCITSAE+V++ QS + L + K + + S+S Q+RAS
Sbjct: 59 QLSLSDCLACSGCITSAESVLVALQSHTQLLDELKKEAELPSGEKRIFVCSVSHQARASF 118
Query: 105 AEHFGISPLQVFKKL-TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A FG+S KL + L +LG + R+++LI + E E+
Sbjct: 119 AAAFGVSVEVADAKLHSLLLDTLGFDYVVGMGVGREISLIHSAQEV------------EK 166
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
S P+++++CPGW+CY EK +++PY+SSVKSPQQ G+ +K IC +P ++
Sbjct: 167 STQK-PVMAASCPGWVCYVEKT-HPHVIPYLSSVKSPQQICGSLLKKVICDTRRVKPSQV 224
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
YHV+VMPC+DKKLEA+R++F + QEE RD VD V+TT EV+ L+ K ++
Sbjct: 225 YHVSVMPCFDKKLEASRDEFSVEEAGQEEKIRD-------VDCVITTKEVVQLLTEKDMS 277
Query: 284 FEALEESPLDKMLTNV--------DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH 335
F L E ++ T+V D H V SSGGY H L ++
Sbjct: 278 FGGLPEIDKSRLYTSVPETWPAERDWANH---VGSSSGGY----LHHVLTAL--RLRHDP 328
Query: 336 LEFKTI------RNSDFREVA-LEVE-GKTLLKFALCYGFQNLQNIVRKVK--------- 378
LE +T +N D E + ++ E G+T+ A YGF+N+QN+VRK+K
Sbjct: 329 LETRTRVDASMGKNQDVMEYSVIDTETGETVASAAQVYGFRNIQNLVRKLKPSRGKGKVV 388
Query: 379 ------------MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 422
+ Y ++EVMACP GC+NGGGQ+ G + +E E +Y
Sbjct: 389 SARKSTKTVSAALNPSTYSYIEVMACPGGCINGGGQVGAPEGVAAREWKDETEKMY 444
>gi|355706352|gb|AES02609.1| nuclear prelamin A recognition factor-like protein [Mustela
putorius furo]
Length = 274
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/290 (46%), Positives = 181/290 (62%), Gaps = 36/290 (12%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ+CV +K K+T K + Q+
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQDCVKPMKVDKSTGSGMAKIHIEEDGSYFQVRQDGGTQK 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--LSNINKGKA------VIISLSPQS 100
E KISL DCLACSGC+TSAETV++ +QS +E + + NK A V++S+SPQS
Sbjct: 61 LEKAKISLGDCLACSGCVTSAETVLITQQSHEELRKILDANKTAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P KKLT F K +GV +FDT+ SR+ +L+E+ EF+ R++ Q S
Sbjct: 121 RASLAARFQLTPTDTAKKLTAFFKKIGVHYVFDTAFSRNFSLLESQREFVQRFR-GQAS- 178
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
S +LP+L+SACPGWICYAEK GS+++P++S+ +SPQQ +G+ +K Q+ P
Sbjct: 179 ---STQTLPVLTSACPGWICYAEKTHGSFLVPHLSTARSPQQVMGSLVKDFFAQQQHLTP 235
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
D IYHVTVMPCYDKKLEA+R DF SQE RD VD V+TT
Sbjct: 236 DRIYHVTVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVVTT 274
>gi|164658812|ref|XP_001730531.1| hypothetical protein MGL_2327 [Malassezia globosa CBS 7966]
gi|159104427|gb|EDP43317.1| hypothetical protein MGL_2327 [Malassezia globosa CBS 7966]
Length = 595
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 242/499 (48%), Gaps = 117/499 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK----ATFKNPDK------------PQVSTSSKQQ 48
FS L + DL+D++ PSQ C+ ++ A+ P+ P + ++ Q
Sbjct: 3 FSGALTLTDLNDYLGPSQACIKPVEAPTTTASSNAPESTIALEGGVYVEAPVNAPRARTQ 62
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAE 106
E +ISL DCLACSGC+TSAE+V++ QS+DE + + + + I ++S Q+ ASL
Sbjct: 63 LETAQISLNDCLACSGCVTSAESVLIGVQSIDEIRNELAQKRERIFIATISSQTIASLQA 122
Query: 107 HFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNS 166
+G+ P V+ ++ LK LG + D S +R ++L E EF R ++ +
Sbjct: 123 RWGMQPPAVWTRVCAALKQLGFDQVHDLSLARHMSLYETVREF--RLRREARMRGTKDAP 180
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHIC-QKLGFRPDE--- 222
+LPM++SACPGW+CYAEK G +LPY+++ KSPQQ G K Q+ G +
Sbjct: 181 TLPMVASACPGWVCYAEKAHGE-LLPYVATTKSPQQLAGILAKRFWGPQQKGVDISQDSA 239
Query: 223 --IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
+YHV+VMPCYDKKLEA R+D E+T + + +VD VLTTGE+ DLI
Sbjct: 240 PYVYHVSVMPCYDKKLEAVRQD-------NEQTSQTK-----DVDCVLTTGELHDLIVGV 287
Query: 281 AVNFEALEE-----------------------------------------SPLDKMLTNV 299
V+ A E +P ++ T
Sbjct: 288 DVHANAETEPRESESERASDKQMDEASDAWKHVMSGSSSGSASEQNEARITPRPQVATEF 347
Query: 300 DDEGHLYG---VAGSSGGYAETVFRHAAKTLFGKVIEGH-------LEFKTIRNSDFREV 349
D H+ SSGGY V A + I H +E +R++D+ +
Sbjct: 348 CDPAHVPAHQEPGSSSGGYIFAVLLDA----YMSWIRSHPDTSQPTVELHILRSTDYTDY 403
Query: 350 ALEV-EGKTLLKFALCYGFQNLQNIVRKV-------------KMRKC---------DYQF 386
L +G TL K A CYGF+N+QN+VRK+ +MR Y +
Sbjct: 404 TLRAPDGTTLFKGATCYGFRNIQNVVRKLQRETGARSTRGRGRMRSVARPSPQDTHPYDY 463
Query: 387 VEVMACPSGCLNGGGQIKP 405
+EVMACP GC+NGGGQ++P
Sbjct: 464 IEVMACPGGCVNGGGQLRP 482
>gi|409044980|gb|EKM54461.1| hypothetical protein PHACADRAFT_185384 [Phanerochaete carnosa
HHB-10118-sp]
Length = 609
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 244/494 (49%), Gaps = 120/494 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDK------------------------PQ 40
FS L + DL+DFI PSQ C+ +++ P++ P+
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQTNGIVPERDGGAASTEIRVDSTGSYYEVSASDPK 62
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDE---FLSNINKG-----KAV 92
+ ++++ + +ISL DCLACSGCITSAE+V++ QS E FL+N + K
Sbjct: 63 ADSGTQRKLQTAEISLNDCLACSGCITSAESVLISMQSHTEVLNFLANNPEDICLSHKVP 122
Query: 93 IISLSPQSRASLAEHFG-------ISPLQVFKKLTTF-LKSLGVKSIFDTSCSRDLTLIE 144
+IS++PQS ASLA +S QV++++ F K LG + ++DT+ +R L L+E
Sbjct: 123 VISIAPQSLASLAASISSSSKAQPVSLQQVYRRVEAFCTKVLGFQHVYDTTFARHLALLE 182
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
E+ R +R + LPML+SACPGWICY EK +LP+IS KSPQQ +
Sbjct: 183 HTREYKER---------KRGDGQLPMLASACPGWICYVEKTHAE-MLPFISRTKSPQQVM 232
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G +K + K G P +IYHVTVMPCYDKKLEA+R+DF + + + V
Sbjct: 233 GTLVKEWLGSKWGKTPSQIYHVTVMPCYDKKLEASRQDFYNDVYATRD-----------V 281
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN--VDDEGHLYGVA------------- 309
D V+TTGE+ +++ K + E D L + + D+ G A
Sbjct: 282 DCVITTGELELMMREKDWSLSTPVEGENDDRLPHGFLTDDSRGSGAAKFDGDDLPELITH 341
Query: 310 --GSSGGYAETVFR---HAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFA 362
SSG Y ++ H + + G L + +R D+ E L + G + + A
Sbjct: 342 PGTSSGSYLHSLINAIVHESPSALG------LNMRAVRAPDYEEYILSEKATGDIVFRGA 395
Query: 363 LCYGFQNLQNIVRKV-----------------------KMRKCD--------YQFVEVMA 391
CYGF+NLQN+VRKV +K D Y +VEVMA
Sbjct: 396 KCYGFRNLQNLVRKVGRDAGVQVGRGAAGRAAGVRGRVVRKKADGSAAPETKYDYVEVMA 455
Query: 392 CPSGCLNGGGQIKP 405
CP GC+NGGGQ++P
Sbjct: 456 CPGGCVNGGGQLRP 469
>gi|410052393|ref|XP_511766.4| PREDICTED: nuclear prelamin A recognition factor [Pan troglodytes]
Length = 691
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 234/467 (50%), Gaps = 74/467 (15%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 228 AKIFLSDCLACDSCVTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 287
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDT----------------------SCS---- 137
A F +S ++L FLKSLGV +FDT SC
Sbjct: 288 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAANFXXXXCVQVSVGSGPKISCQVSKF 347
Query: 138 -------------RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP-------- 176
R+ TL + + F + + D + + + + P
Sbjct: 348 CDVLMRSDWAVRLRERTL-QGRSHFPVASRPAGSHDPQPGHRGWVLGPAQAPGADRGSLL 406
Query: 177 --GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
GW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDK
Sbjct: 407 SPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDK 466
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
KLEA +E L D VLT+GE+ +++ ++ + ++ +D
Sbjct: 467 KLEALQESLPPALHGSR-----------GADCVLTSGEIAQIMEQGDLS---VRDAAVDT 512
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE
Sbjct: 513 LFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKN 571
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L
Sbjct: 572 GEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKAL 631
Query: 415 IKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 632 LRQMEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 677
>gi|395332687|gb|EJF65065.1| iron hydrogenase [Dichomitus squalens LYAD-421 SS1]
Length = 615
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 172/499 (34%), Positives = 236/499 (47%), Gaps = 122/499 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVS---------------------- 42
FS L + DL+DFI PSQ C+ +++ P +
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQTNKPEPQDAGAAATQIQVDSSGSYYEVSTNAPTA 62
Query: 43 --TSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------KAV 92
T+ KQ+ +ISL DCLACSGCITSAE+V++ QS E L+ + K
Sbjct: 63 GQTAGKQKLTTAEISLNDCLACSGCITSAESVLITMQSHAEVLNVLENNPPHSSPDHKVP 122
Query: 93 IISLSPQ------SRASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEA 145
+IS++PQ + S + +S LQV ++++ F K LG +FDT+ +R +TL+E
Sbjct: 123 VISIAPQCLASLAASISSSSSQNVSLLQVLRRVSAFCKEVLGFAHVFDTTFARHITLLEH 182
Query: 146 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 205
EF R + LPML+SACPGW+CYAEK +LP+IS KSPQQ +G
Sbjct: 183 AKEFTER---------KNGEGKLPMLASACPGWVCYAEKTHAE-MLPFISRTKSPQQVMG 232
Query: 206 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 265
+K K G PD+IYHVTVMPCYDKKLEA+R+DF +E +VD
Sbjct: 233 TLVKEWSGAKWGKTPDQIYHVTVMPCYDKKLEASRQDFY-----------NEAYATRDVD 281
Query: 266 SVLTTGEVLDLIQLKAV---------NFEALEESPLDKMLTNVDDEGHLYGV-------- 308
V+TTGE+ L+Q K N L M VDD+ G+
Sbjct: 282 CVITTGELQLLMQEKGWDLSIPVSDENVPRLTSFSRGAMFGTVDDQRSDPGMLSADLAFP 341
Query: 309 ------AGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFRE--VALEVEGKTLL 359
SSG Y ++ + V E + KT+R +D+ E V G+ +
Sbjct: 342 ELLMHPGTSSGSYLHSIISTLTSSSSNPDVFE--VTTKTVRTADYEEYTVTNRETGQVVF 399
Query: 360 KFALCYGFQNLQNIVRKV------------------------KMRK----------CDYQ 385
+ A CYGF+NLQN+VRKV +RK Y
Sbjct: 400 RGAKCYGFRNLQNVVRKVGRDSGVQVGRGAAGRLAGLRARGRAVRKDAAGSAAQEDRGYD 459
Query: 386 FVEVMACPSGCLNGGGQIK 404
+VEVMACPSGC+NGGGQ++
Sbjct: 460 YVEVMACPSGCVNGGGQLR 478
>gi|350638253|gb|EHA26609.1| hypothetical protein ASPNIDRAFT_170479 [Aspergillus niger ATCC
1015]
Length = 597
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/482 (34%), Positives = 236/482 (48%), Gaps = 90/482 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---DKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ ++ K+P D P +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAKDPSKTDNPYEVTTEDKVQPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN-----------------------KGKAVII 94
DCLACSGC+TSAE V++ QS E L+ ++ +G+ +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHPELPLNREDGTITQELGTASDEGRVFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GI+ + + FL G + DT+ R+ L+
Sbjct: 121 SVSPQVRASLAATYGITEKEATYMIHQFLSGPHGLRAGGKNGSGFTWVADTNVLREAVLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQLGSYILPYISSVKS 199
+E S +S ++ P+LSSACPGWICYAEK S++LP++S +KS
Sbjct: 181 LTADEVGETLTTSPDSSSTNGATNTLPKRPILSSACPGWICYAEKTH-SFVLPHLSRLKS 239
Query: 200 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG- 258
PQ G K + + LG I+H+ VMPC+DKKLEA+RE+ D+ + +DEG
Sbjct: 240 PQALAGTFFKTVLSKSLGIPASRIWHLAVMPCFDKKLEASREELT---DASWLSAKDEGH 296
Query: 259 LEIPEVDSVLTTGEVLDL-----IQLKAVNFEALEES---PLDKMLTN----VDDEGHLY 306
+ +VD V+TT E+L L I L + F++L +S P M N
Sbjct: 297 TAVRDVDCVITTREMLSLASSRGISLPNLPFKSLPQSYIPPFPDMTLNDFLFSKSSPGQS 356
Query: 307 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT-LLKFALCY 365
AG+SGGY H +T + + + RN+D E L +T +LK A Y
Sbjct: 357 AAAGTSGGY----LHHVLQTFQARNPGSEIVTQRGRNADVVEYTLMSSERTPILKAARYY 412
Query: 366 GFQNLQNIVRKVKMRKC-----------------------DYQFVEVMACPSGCLNGGGQ 402
GF+N+QN+VRK+K + DY +VEVMACP GC NGGGQ
Sbjct: 413 GFRNIQNLVRKLKPARASRLPGGNRRLPVGRGAASGSSGTDYAYVEVMACPGGCTNGGGQ 472
Query: 403 IK 404
I+
Sbjct: 473 IR 474
>gi|402224205|gb|EJU04268.1| iron hydrogenase [Dacryopinax sp. DJM-731 SS1]
Length = 602
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 244/472 (51%), Gaps = 88/472 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV---------------------VSLKKATFKNPDKPQVST 43
FS L + DL+DFI PSQ C+ V + ++ S+
Sbjct: 3 FSGALTLTDLNDFINPSQACIKPVEQFNKPVAEPGAAATQIEVDAQGGYYEVAQGAVGSS 62
Query: 44 SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------KAVIIS 95
S+++ E +ISL DCLACSGCITSAE+V++ QS +E L+ ++ + I+S
Sbjct: 63 GSRKKLETAQISLNDCLACSGCITSAESVLITLQSHEEVLNFLSTNPPYSAPGHRIPILS 122
Query: 96 LSPQSRASLAEHFGISPLQV--FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 153
+SPQS ASL+ SP +++ LG +DT+ +R + +E EF R
Sbjct: 123 ISPQSLASLSASLSPSPPISAHLHRISQLASQLGFFRTYDTTFARHIAHLEQAVEFSERA 182
Query: 154 K-QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHI 212
+ + Q + E + LPML+SACPGW+CYAEK G +LP++S VKSPQQ +G +K +
Sbjct: 183 EAKRQGNGGEGAEERLPMLASACPGWVCYAEKTHGE-MLPFMSRVKSPQQIMGTLVKEWL 241
Query: 213 CQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE 272
+ G P++IYHVTVMPCYDKKLEA+R+DF +++ + RD VD VLTTGE
Sbjct: 242 GSQWGASPEQIYHVTVMPCYDKKLEASRQDFY----NEQYSTRD-------VDCVLTTGE 290
Query: 273 VLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI 332
+ L++ K F+ + +P + + + + +SG Y ++ + K++
Sbjct: 291 LALLLREK--GFDLSQPAPSESFAADYEIPSFVPHPGSTSGSYLHSLIHSIVTSSSTKLV 348
Query: 333 EGHLEFKTIRNS-DFREVAL-----EVEGKT--LLKFALCYGFQNLQNIVRKV------- 377
LE +R S D+ E L E G + + + A CYGF+NLQN+VRKV
Sbjct: 349 ---LETCAVRGSADYVEYTLKPAQTEEAGPSQPVFRAATCYGFRNLQNLVRKVARDAGVV 405
Query: 378 ----------------KMRKC--------DYQFVEVMACPSGCLNGGGQIKP 405
++R Y FVEVMACP GC+NGGGQ+KP
Sbjct: 406 TGKGALGRLPGATARRRLRPGATTTEGDNAYDFVEVMACPGGCVNGGGQMKP 457
>gi|428176855|gb|EKX45737.1| hypothetical protein GUITHDRAFT_42060, partial [Guillardia theta
CCMP2712]
Length = 389
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 225/407 (55%), Gaps = 32/407 (7%)
Query: 12 GDLSDFIAPSQNCVVSLKKA-TFKNPDKPQVSTSSKQQAEPV-KISLKDCLACSGCITSA 69
GDL+DF++P+ CV+ LK TFK + + K ++E V +SL DCL+CSGC+TSA
Sbjct: 1 GDLNDFLSPASECVLPLKAIDTFKKSEGSR--KDPKNRSEVVASVSLSDCLSCSGCVTSA 58
Query: 70 ETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGV 128
E VM+++Q +D + G ++S SPQS +SLA F + + + +++FLK +GV
Sbjct: 59 EEVMMKRQGVDHLTKAVEVGSTCVVSFSPQSLSSLAACFNTTASKFARSVSSFLKLRVGV 118
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
K +FDTS S + EA EF+ R+ + P+L + CPG + ++EK+
Sbjct: 119 KFVFDTSLSAQVAQHEAKKEFMERWG---------ARGPFPILCTECPGVVIFSEKKQYD 169
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKL-------GFRPDEIYHVTVMPCYDKKLEAARE 241
+S+V+SPQ G + ++ L G +I+H T+MPC+DKKLE+ARE
Sbjct: 170 LFARLLSTVRSPQAISGE--RTYLFSSLNPFDMSTGKLIKQIWHCTIMPCFDKKLESARE 227
Query: 242 DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM--LTNV 299
+F S ET PE D+V+TT E + + F+ +ES + + L ++
Sbjct: 228 EF-----SVVETEGGALTSSPETDAVITTSEFYSYLLQEGFQFQGGKESNVGRKFKLPSM 282
Query: 300 DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL--EFKTIRNSDFREVALEVEGKT 357
+ AG S GY E V RHAA+ + G + L + + D +E+ +
Sbjct: 283 SEPQLSDHSAGFSNGYLEVVARHAAQQILGINLPPSLVYNYPATGSLDIKELTVSDGSGR 342
Query: 358 LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
L FA YG+++LQ +++KV+MR+C Y +VE+M+CP GC NGGGQ+K
Sbjct: 343 ELNFAAVYGYRHLQTLIQKVRMRQCKYHYVELMSCPEGCTNGGGQLK 389
>gi|406860086|gb|EKD13146.1| iron only hydrogenase large subunit domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 570
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 162/473 (34%), Positives = 235/473 (49%), Gaps = 84/473 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSG 64
S L I L+DFI+P C+ + N D P S S+ P +ISL DCLACSG
Sbjct: 1 MSAILSIDTLNDFISPGVACIKPNEYEISFNTDAPPPS-SNNNNLPPAQISLTDCLACSG 59
Query: 65 CITSAETVMLEKQSLDEFLSNINK---------------------GKAVIISLSPQSRAS 103
C+TSAE V++ QS E LS ++ G+ + S+SPQ+RAS
Sbjct: 60 CVTSAEAVLVSLQSHTEVLSELDSAPALRLISSPTGLVIENPEDPGRIYVASVSPQTRAS 119
Query: 104 LAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLIEACNEFIAR 152
+A F ++ + + L GVK + DT+ +RD L+ +E +
Sbjct: 120 IAATFKVTEREAGYMIEQLLSGPRGVKGRAVYRNAFQWVVDTNVARDACLVLGADEVMHS 179
Query: 153 YKQSQES------DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
+ + D ++ P+LSS+CPGW+CYAEK +ILP++S +KSPQ +G
Sbjct: 180 LLAGKGTTNGLGQGDAQNQPQKPILSSSCPGWVCYAEKTH-PHILPHLSRLKSPQALMGT 238
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K + +KLG PD I+HV +MPC+DKKLEA+RE+ D+ E G+ +VDS
Sbjct: 239 LLKTTLSKKLGISPDRIWHVAIMPCFDKKLEASREELT---DAVWEGTGTRGVR--DVDS 293
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDK------------MLTNVDDEGHLYGVAGSSGG 314
V+T+ E+L L + + V+F L +PL + V + AG+SGG
Sbjct: 294 VITSKELLMLAESRRVDFAKLPRAPLPSRIPFPDLKLDAFLFPPVRRRKNNVPAAGTSGG 353
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQNLQNI 373
V ++ A G I + RN+D E ++ G+TL K A YGF+N+QN+
Sbjct: 354 NLYYVLQYFASQHEGATI----QTTRGRNADVLEYSVTSSAGETLFKAARYYGFRNIQNL 409
Query: 374 VRKVK---------------MRK-------CDYQFVEVMACPSGCLNGGGQIK 404
VRK+K RK ++ +VEVMACP GC NGGGQIK
Sbjct: 410 VRKLKPARPSRMPGGKPIGSARKPVGKASGPEFSYVEVMACPGGCTNGGGQIK 462
>gi|290994687|ref|XP_002679963.1| nuclear prelamin A recognition factor [Naegleria gruberi]
gi|284093582|gb|EFC47219.1| nuclear prelamin A recognition factor [Naegleria gruberi]
Length = 614
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 178/544 (32%), Positives = 275/544 (50%), Gaps = 137/544 (25%)
Query: 34 KNPDKPQVSTSSKQQAEP---VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK 90
++ ++ ++ ++ QQAEP KI L DCLACSGC+T+AE+V++ +QS+++FL+++ + K
Sbjct: 86 RSNNRGTINLNNSQQAEPKKIAKIELADCLACSGCVTTAESVLVNQQSVEQFLTSLKEMK 145
Query: 91 ----------------------------------------AVIISLSPQSRASLAEHFGI 110
+I++S QS ASL+ ++
Sbjct: 146 LFSPFIEKIQDKVNVSDLEDDLDSILLSGSKRVVKPQPNSIFVITISQQSAASLSSYYQC 205
Query: 111 SPL-QVFKKLTTFLK-SLGVKSIFDTSC-SRDLTLIEACNEFIARYKQSQESDDERSNSS 167
S + + +L+ K G ++F+TS +R ++ +E C +F+ RYK+ +
Sbjct: 206 SSVRECLSRLSYLFKVKFGAVAVFETSTLARLVSHLELCEDFLNRYKEGKG--------- 256
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI---- 223
P+ +SACPGWICYAEK I+P IS+VKSPQQ +G +K I + +EI
Sbjct: 257 -PVFASACPGWICYAEKT-QPEIIPSISTVKSPQQIMGTFVKKFITSNMKQLSNEISLEN 314
Query: 224 ---YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ-- 278
YH TVMPC+DKKLEA+R DF +VD VLT+ E+ +L+Q
Sbjct: 315 LKVYHTTVMPCFDKKLEASRPDFTND-------------PFDKVDMVLTSSEITELLQKE 361
Query: 279 ----------LKAVNFEALEESPLDKML-----------TNVDDEGHLYGVAGS------ 311
NF E+ LD + ++ ++ L GS
Sbjct: 362 LQIETPEDFIRNTENFIKNEKYQLDSIFEILSQSTHHSTQDISEDATLLEWLGSESDATG 421
Query: 312 SGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVAL---EVEGKTLLKFALCYGF 367
SGGY E VF++AAK LFG + + L F++ RNSD+RE L K LL+F + GF
Sbjct: 422 SGGYCEIVFKYAAKKLFGIDLRDKTLIFESKRNSDYRETVLVDPTDSSKILLRFVIANGF 481
Query: 368 QNLQNIVRKVKMRKCD----YQFVEVMACPSGCLNGGGQIKPKPGQ-------------S 410
+N+QN+VR+ M++ D + FVEVMACP GCLNGGGQ+K K + +
Sbjct: 482 RNIQNLVRR--MKQADNSEPFHFVEVMACPIGCLNGGGQVKVKQPKITLDIDSPSSVTIT 539
Query: 411 PKELIKTLETIYLENV----MLADPFKNPL---VRSLYDEWLE-QPGSEKAKKHVHTEYH 462
PK+ + E +Y +++ L + N + + +LY W++ GS +AK +HT+YH
Sbjct: 540 PKQHLAQTEKLYRDDISNIKSLCENNSNLVKEGLNNLYYNWIKGSVGSVQAKSILHTQYH 599
Query: 463 PVVK 466
V K
Sbjct: 600 AVEK 603
>gi|255947558|ref|XP_002564546.1| Pc22g05110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|259511270|sp|B6HUC4.1|NAR1_PENCW RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|211591563|emb|CAP97799.1| Pc22g05110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 604
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 164/490 (33%), Positives = 226/490 (46%), Gaps = 95/490 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLK----KATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ ++ K T D +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPPKDTKNQEDAYEVTTEDKVQPEDLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN-----------------------KGKAVII 94
DCLACSGC+TSAE V++ QS E L+ ++ +GK +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHPEIPLTHEPHGVGVNNTEDSKEGKIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GIS + + L G + DT+ R+ L+
Sbjct: 121 SVSPQVRASLATTYGISEKEAGYMIDQLLSGPQGLRGGGKHGNGFTWVVDTNAMREAVLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSP 200
+E + S +S+ SLP +LSSACPGWICYAEK +ILP++S +KSP
Sbjct: 181 LTADEVSDSLNSGESSAMSQSDDSLPKRPILSSACPGWICYAEKT-HPFILPHLSRLKSP 239
Query: 201 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 260
Q G +K + + LG P I+H+ VMPC+DKKLEA+RE+ Q ++ E
Sbjct: 240 QALSGTFLKTVLSKSLGVHPSRIWHLAVMPCFDKKLEASREELTDMSWRQGDSSGSESQP 299
Query: 261 IPEVDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKMLTNVDDEGHLYG 307
+ +VD V+T E+L L + + L P LD L+
Sbjct: 300 VRDVDCVITARELLSLASSRGSSLRDLPLQPLHSSFNPPFPEKTLDSFLSLKRSRAEQSL 359
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYG 366
G+SGGY H T + L RN D E V + EG+ +LK A YG
Sbjct: 360 ATGTSGGY----LHHVLMTFQARNPGSELVVNRGRNVDVVEYVLMSPEGQPILKAARYYG 415
Query: 367 FQNLQNIVRKVKMRKC--------------------------------DYQFVEVMACPS 394
F+N+QN+VRK+K + DY +VEVMACP
Sbjct: 416 FRNIQNLVRKLKPARVSRLPGAKPAVRPAAGRRQPMSRNAVSTGSSGSDYAYVEVMACPG 475
Query: 395 GCLNGGGQIK 404
GC NGGGQI+
Sbjct: 476 GCTNGGGQIR 485
>gi|344302035|gb|EGW32340.1| nuclear architecture related protein [Spathaspora passalidarum NRRL
Y-27907]
Length = 494
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 226/463 (48%), Gaps = 84/463 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSG 64
S L DL+DFI+P C+ ++ + N + ++ K P +ISL DCLACSG
Sbjct: 1 MSALLSADDLNDFISPGVACIKPIETPSKSNELEIEIDAKPKSVLAPAQISLADCLACSG 60
Query: 65 CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 124
CITSAE V++ + S E L + K + S+S Q+RASLA + + Q+ + L LK
Sbjct: 61 CITSAEEVLVAQHSHKELLKALETDKVFVASVSHQARASLALAYNVDVEQLDQLLIHLLK 120
Query: 125 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 184
+G + I TS R L+L+ N I R E P LSS CPGW+ YAEK
Sbjct: 121 KMGFRYIVGTSLGRKLSLVNESNSMIQRKMDKTEG---------PTLSSICPGWVLYAEK 171
Query: 185 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 244
YI+P +S+VKSPQQ G +K+ ++L +++YH+T+MPC+DKKLE+AR +
Sbjct: 172 T-HPYIIPRLSNVKSPQQVTGCILKNLTSEELNVPRNQVYHLTIMPCFDKKLESARPEV- 229
Query: 245 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ-----LKAVNF------EALEESPLD 293
D G +VD VLT EV+ LI+ L A ++ + +ES +
Sbjct: 230 -----------DGGTS--DVDCVLTPREVVALIEEMGYDLIAKDYTFGNTSQVYKESAPN 276
Query: 294 KM----LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK--VIEGHLEFKTI--RNSD 345
K +D G +SGGY T R + L K I EFK + RN+D
Sbjct: 277 KWPFVEYAWSNDSG------SASGGYGYTYLRLYQQYLISKENYIADQFEFKVVKGRNAD 330
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK--------------------------- 378
E+ L + + + GF+N+QN+VRK+K
Sbjct: 331 IYEMRLMYQDTQIASSGIVNGFKNIQNLVRKLKPGNTVAKPNALLARRRGRGGSTAKAKK 390
Query: 379 ------MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
KCDY VE+MACPSGC+NGGGQI P G K+ I
Sbjct: 391 TSEEADPSKCDY--VEIMACPSGCINGGGQISPAEGIVEKDWI 431
>gi|213405865|ref|XP_002173704.1| iron hydrogenase [Schizosaccharomyces japonicus yFS275]
gi|259511272|sp|B6K2N0.1|NAR1_SCHJY RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1 homolog;
AltName: Full=Nuclear architecture-related protein 1
homolog
gi|212001751|gb|EEB07411.1| iron hydrogenase [Schizosaccharomyces japonicus yFS275]
Length = 515
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 172/517 (33%), Positives = 260/517 (50%), Gaps = 88/517 (17%)
Query: 13 DLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVK------------ISLKDCL 60
DL+D++ P CV +K K ++ + + + E K ISL DCL
Sbjct: 8 DLNDYLNPGVACVKPVK-VQKKQDNQQNIKVNGESYYEVTKDTGEVEELGIASISLNDCL 66
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINKGKA---VIISLSPQSRASLAEHFGISPLQVFK 117
ACSGCITSAE+V++ QS E L +N +A I+ +SPQ+RASLA ++ +S +V
Sbjct: 67 ACSGCITSAESVLINLQSYHEVLKFVNAKEADDFFILQMSPQARASLAAYYNLSVQEVQL 126
Query: 118 KL-TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS-------LP 169
+ + F L + DT SR+++L +A EF + + + ++ S LP
Sbjct: 127 WIQSVFTNELKFNVVVDTGFSREISLRQAAIEFCQSWVAANAAKTVYNSKSGEVAPKPLP 186
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+LSS+CPGWICY EK S ++P+IS+V+SPQQ G +K +LG +I+ +++M
Sbjct: 187 VLSSSCPGWICYVEKTHSS-LIPHISTVRSPQQVAGRLLKDWFSYQLGISRKKIWVLSLM 245
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL-- 287
PC+DKKLEA+R DFV E RD VD V+T E+++L++ K ++ +++
Sbjct: 246 PCFDKKLEASRNDFV------NEQVRD-------VDCVITPKELVELLKTKNISPQSMDL 292
Query: 288 ------EESP-LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
E++P L V E SSGGY + AAK LF + +
Sbjct: 293 DSLSISEQTPCLPSWYEPVQFEQQ---NGSSSGGYLHYIMTFAAKALFDINDLTNRINVS 349
Query: 341 IRNSDFREVALEV--EGKTLLKFALCYGFQNLQNIVRKV--------------KMR---- 380
+N+D E L G+TLL+ A CYGF+N+QN+VR V +M+
Sbjct: 350 QKNADMIEYELTSPDTGETLLRMATCYGFRNIQNLVRNVGRKSAPRRGRVLLKRMKNMST 409
Query: 381 -------KCDYQFVEVMACPSGCLNGGGQIKPKPGQS-----PKELIKTLETIYLE-NVM 427
K +VEVMACP GC+NGGGQ+ P + +E ++ +E Y + V
Sbjct: 410 SPSTGTGKQKLDYVEVMACPGGCINGGGQLPPPESSADFSGISREWMRQVEAHYFQPGVR 469
Query: 428 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 464
D N V + + WL P + +HT+YH V
Sbjct: 470 QVD---NAAVDAAVEHWL--PSYSLQQSILHTKYHAV 501
>gi|156062172|ref|XP_001597008.1| hypothetical protein SS1G_01201 [Sclerotinia sclerotiorum 1980]
gi|259511273|sp|A7E7C4.1|NAR1_SCLS1 RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|154696538|gb|EDN96276.1| hypothetical protein SS1G_01201 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 571
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 165/482 (34%), Positives = 237/482 (49%), Gaps = 103/482 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---DKPQVSTSSK----QQAEPVKISLK 57
S L DL+DFI+P C+ ++ P ++ ++S ++ P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAAKPSADNELEISFNTDAPLPSDLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK-----------------------GKAVII 94
DCLACSGC+TSAE V++ QS E LS ++ GK +
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLSQLDSAPGLRLYKNATGTGIKVEGVEQGGKIYVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLI 143
S+SPQSRAS+A FG++ + + L G+K+ + DT+ +R+ L+
Sbjct: 121 SVSPQSRASIAATFGVTEREAGYMIEHLLSGPKGIKNRAVYRNAFQWVVDTNITREACLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E IA + S P+L+S+CPGW+CYAEK ++LP++S +KSPQ
Sbjct: 181 LGAEEVIASMTDT--------GSKKPVLTSSCPGWVCYAEKTH-PHVLPHLSRMKSPQAL 231
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G IK + +KLG PD I+HV VMPC+DKKLEA+RE+ D+ E G+ +
Sbjct: 232 MGTLIKTTLSRKLGISPDRIWHVAVMPCFDKKLEASREELT---DAVWEGTGTRGVR--D 286
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKML--TNVDDEGHLYGV 308
VDSV+T+ E+L L + + F L +P +D L +N G+
Sbjct: 287 VDSVITSKELLMLADSRGIEFSKLPRTPIPTSSRIPFPDTKIDSFLFPSNRKGSGNGNRD 346
Query: 309 AGSSGG---YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALC 364
AG+SGG YA F K + I+G RN D + + E G+ LLK A
Sbjct: 347 AGTSGGNLHYALHYFASQHKGSSIQTIKG-------RNVDVVDYTVVAENGEILLKAARY 399
Query: 365 YGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQ 402
YGF+N+QN+VR++K K DY +VEVMACP GC NGGGQ
Sbjct: 400 YGFRNIQNLVRRLKPAKPSRMPGGKPIGSARRPNGKASGPDYSYVEVMACPGGCTNGGGQ 459
Query: 403 IK 404
IK
Sbjct: 460 IK 461
>gi|390602423|gb|EIN11816.1| iron hydrogenase [Punctularia strigosozonata HHB-11173 SS5]
Length = 640
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 246/522 (47%), Gaps = 135/522 (25%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ--------------QAE 50
FS L + DL+DFI PSQ C+ ++++T PD + +S Q + +
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVEQST-PVPDAAEPGAASTQIHIDSSGSYYEVGSKKQ 61
Query: 51 PVK------ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------KAVIISL 96
PV+ I+L DCLACSGCITSAE+V++ QS E +S + K ++S+
Sbjct: 62 PVRKLERAEITLNDCLACSGCITSAESVLITLQSHTEVMSFLENNPPPTSSSHKTPVLSI 121
Query: 97 SPQSRASLAEHFG-------ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
+PQS ASLA +S V +++ F +LG + I+DT+ +R + L+E +EF
Sbjct: 122 APQSLASLAASISSSSSSPHVSLQAVLRRVQAFCGTLGFEHIYDTTFARHVALLEHAHEF 181
Query: 150 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 209
R + + E LPML+SACPGW+CYAEK +LP+IS KSPQQ +G +K
Sbjct: 182 SERKRSTGEG-------QLPMLASACPGWVCYAEKTHAE-MLPFISRTKSPQQVMGTLVK 233
Query: 210 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 269
+ + PD +YHV VMPCYDKKLEA+R+DF Y D + +VD V+T
Sbjct: 234 EWLAKSWNKTPDMVYHVAVMPCYDKKLEASRQDF----------YNDV-FKTRDVDCVIT 282
Query: 270 TGEVLDLIQLKAVNFEA--LEESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVFRH---- 322
TGE+ L++ K + A E+ + D L G SSG Y T+
Sbjct: 283 TGELELLMREKGWDLSAPVKGEAEGSRSAATEDQIPELLSHPGSSSGSYLHTLISAITRG 342
Query: 323 --AAKTLFGKVIEGHLEF----------------------------------KTIRNSDF 346
AA + +EG E K +RN+DF
Sbjct: 343 SPAAASPGNVQLEGRREIGGTDSVPYASEVAVSGGRPTPPDGNDGGEYEVSSKIMRNTDF 402
Query: 347 RE--VALEVEGKTLLKFALCYGFQNLQNIVRKVKM------------------------- 379
E V G+ + + A CYGF+NLQN+VRKV
Sbjct: 403 EEYTVTRRSTGEVMFRGARCYGFRNLQNVVRKVGRDAGVQVGRGAAGRLTGGVRGRRRGA 462
Query: 380 ---------RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++ Y +VEVMACP GC+NGGGQ++P P P+
Sbjct: 463 VSAAGADGEKERPYDYVEVMACPGGCVNGGGQLRP-PAPQPQ 503
>gi|389741735|gb|EIM82923.1| iron hydrogenase [Stereum hirsutum FP-91666 SS1]
Length = 690
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 178/530 (33%), Positives = 244/530 (46%), Gaps = 142/530 (26%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK-----------------------------ATFKN 35
FS L + DL+D+I PSQ C+ +++ + +
Sbjct: 3 FSGALTLTDLNDYITPSQACIKPVEQKNTPITEAPQPGAAATEIRVDSDGGYYEVSKSQV 62
Query: 36 PDKPQVSTS---SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--- 89
PD STS S ++ E +ISL DCLACSGCITSAE+V++ QS E L+ ++
Sbjct: 63 PDVEMASTSGSGSGKKLETAEISLNDCLACSGCITSAESVLITLQSHTEVLNFLSSNAPS 122
Query: 90 -----KAVIISLSPQSRASLAEHFG------ISPLQVFKKLTTF-LKSLGVKSIFDTSCS 137
K ++S+SPQS ASLA +S + ++ F + +LG +FDT+ +
Sbjct: 123 SSPSHKLPVVSISPQSVASLAASISSAQATEVSLYETLIRIEHFCVSTLGFAHVFDTTFA 182
Query: 138 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 197
R L+L+E EF R KQ+ ++ +PML+SACPGW+CYAEK + +LP+IS
Sbjct: 183 RHLSLMEHVREFHDR-KQAADASGTGEGGQIPMLASACPGWVCYAEKTH-AEMLPFISRT 240
Query: 198 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 257
KSPQQ +G +K + + G +PDEIYHVTVMPCYDKKLEA+R+DF +
Sbjct: 241 KSPQQVMGTIVKEWLAPQWGKKPDEIYHVTVMPCYDKKLEASRQDFYNDI---------- 290
Query: 258 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-SSGGYA 316
+ +VD VLTTGE+ L+Q K + S + L G SSG Y
Sbjct: 291 -YQTRDVDCVLTTGELQLLMQEKGFDLSMPVPSSSSSPSPSEPLLPRLLQHPGSSSGSYL 349
Query: 317 ETVFRHAAKTL--------------------------FGKVIEG--HLEFKTIRNSDFRE 348
T+ A T G HLE KTIR SD+ E
Sbjct: 350 HTILLDIASTYPSSKSSSTHPQISSASASISPVPSESVGPTPSSLLHLEAKTIRTSDYEE 409
Query: 349 VAL--EVEGKTLLKFALCYGFQNLQNIVRKVKM--------------------------- 379
L + + K A CYGF+NLQN+VRKV
Sbjct: 410 YILTDTRTSEIIFKAARCYGFRNLQNVVRKVAKSAGVQSGKGAAGRLGARKAASGAGVRA 469
Query: 380 ----------------RKCD--------YQFVEVMACPSGCLNGGGQIKP 405
R+ D Y +VEVMACP GC+NGGGQ++P
Sbjct: 470 RVKKRAGAAGAGAGLSREGDGVVAADRAYDYVEVMACPGGCVNGGGQLRP 519
>gi|46107184|ref|XP_380651.1| hypothetical protein FG00475.1 [Gibberella zeae PH-1]
Length = 577
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 236/478 (49%), Gaps = 90/478 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSS--------KQQAE-----P 51
S L DL+DFI+P C+ ++ T + PQ + S QQ P
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIE--TLPSAPPPQSQSQSLETEVILDGQQPTANPNTP 58
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+ISL DCLACSGC+TSAE V++ QS E L+ ++ A+
Sbjct: 59 AQISLTDCLACSGCVTSAEAVLVSLQSHAEVLTTLDSAPALRLVTDDSGKFRVEGLEDEN 118
Query: 93 ----IISLSPQSRASLAE--HFGISPLQVFKKLTTFLKSL-GVKS----------IFDTS 135
++S+SPQ+RA+LA G+S QV L + GV S + DT+
Sbjct: 119 AKLFVVSVSPQTRANLAAACGAGVSEAQVGHMLDNLFRGPEGVASGGKYNNEFAWVVDTN 178
Query: 136 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 195
+R+ TL+ +E + S + + P+L+S+CPGW+CYAEK ++LP+IS
Sbjct: 179 TAREATLVLGADEVL------NPSQSTPATPAKPILASSCPGWVCYAEKTH-PHVLPHIS 231
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 255
VKSPQ +G +K + + LG P I+H+ +MPC+DKKLEA+RE+ ++ ++ E
Sbjct: 232 KVKSPQALMGTLLKTTLSRTLGIAPSRIWHLAIMPCFDKKLEASREELTEEVWAEGEI-- 289
Query: 256 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH-------LYGV 308
G + +VD V+T+ E+L L + + +NF + ++PL K D + H L G
Sbjct: 290 -RGRGVRDVDCVITSKEILMLAESRGLNFFNVPKTPLSKSNPFPDPKLHDFLFPRRLPGN 348
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 368
+ G + + H K+ + + RN D E ++ V G+ + + A YGF+
Sbjct: 349 SPREAGTSGGLLWHILKSRAAQTPGAEIVHTRGRNVDVAEYSIVVNGEPVFRAARYYGFR 408
Query: 369 NLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQIK 404
N+QN+VR++K K +Y +VEVMACP GC NGGGQIK
Sbjct: 409 NIQNLVRRLKPAKPSRMPGGKPFGSARKPAGKAGSLEYSYVEVMACPGGCTNGGGQIK 466
>gi|358398690|gb|EHK48041.1| hypothetical protein TRIATDRAFT_81910 [Trichoderma atroviride IMI
206040]
Length = 578
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 159/486 (32%), Positives = 235/486 (48%), Gaps = 103/486 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV------VSLKKATFKNP-----DKPQVSTSSKQQAEPVK 53
S L DL+DFI+P C+ +L N D S+SS A P +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPALPAQQAANEYEVVLDGQHPSSSSANGASPAQ 60
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------------------- 92
ISL DCLACSGC+TSAE +++ QS E +S ++ A+
Sbjct: 61 ISLTDCLACSGCVTSAEAILVSLQSHSEVISTLDAAPALRVVGPDAQGNFKVEGLENEDA 120
Query: 93 ---IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL-----------GVKSIFDTSC 136
+ S+S Q+RA+LA G +S Q L L+ + + D +
Sbjct: 121 KLFVASVSSQTRANLAAACGREVSESQAGHMLENLLRGPEGLAKGGKWNNSFEWVVDINV 180
Query: 137 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 196
+RD TL E ++ S S P+LSS+CPGW+CYAEK Y+LP++S
Sbjct: 181 ARDATLALGTAEVLSSPTPGV------SAPSTPILSSSCPGWVCYAEKTH-PYVLPHLSK 233
Query: 197 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 256
VKSPQ +G +K + +KLG P+ I+HV VMPC+DKKLEA+RE+ +E +
Sbjct: 234 VKSPQALMGTILKTTLSRKLGIPPNRIWHVAVMPCFDKKLEASREELT------DEVWAR 287
Query: 257 EGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEESP--LDKMLTNVDDEGHLY----- 306
GL + +VD V+T+ EVL L + + ++F ++S + + DD+ H +
Sbjct: 288 SGLPGRGVRDVDCVITSKEVLMLAESRGLSFFDFQKSASSVPPSIPFPDDKVHAFLFPKK 347
Query: 307 ------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 360
+AGSSGG + H +T ++ ++ RN+D E ++ V G+ + K
Sbjct: 348 GSRNPSRIAGSSGG----LLHHILQTKAAQIAGSEIQINRGRNADVVEYSVTVNGEPVFK 403
Query: 361 FALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLN 398
A YGF+N+QN+VR++K + D+ FVEVMACP GC N
Sbjct: 404 AARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPAGKAASLDFSFVEVMACPGGCTN 463
Query: 399 GGGQIK 404
GGGQIK
Sbjct: 464 GGGQIK 469
>gi|407926563|gb|EKG19530.1| Iron hydrogenase large subunit [Macrophomina phaseolina MS6]
Length = 654
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 166/499 (33%), Positives = 240/499 (48%), Gaps = 108/499 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK--ATFKNPDKP-QVSTSSKQQAE---PVKISLKD 58
S L DL+DFI+P C+ ++ A ++ P +V+T K A P +ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETIPANSEDASNPYEVTTEDKVAASNPPPAQISLTD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNIN------------------------------- 87
CLACSGC+TSAE V++ QS E L+ ++
Sbjct: 61 CLACSGCVTSAEAVLVSLQSHTEVLNTLDSYAELTPPWLAKEHANGTYNGLSGGLNGTSG 120
Query: 88 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSC 136
+GK + S+SPQ+RAS+A +G S + + L GV+S I DT+
Sbjct: 121 EGKIFVASVSPQARASIAATYGTSEREAGYMIEQLLSGPQGVRSGGPHGSGFTWIIDTNT 180
Query: 137 SRDLTLIEACNEFI-ARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQLGSYIL 191
R+ L+ A +E + A S + E ++S+ P+L+SACPGWICYAEK Y+L
Sbjct: 181 VREAALVLAADEVVSALSNPSTPAPGEEGSASVVPKKPILTSACPGWICYAEKTH-PYVL 239
Query: 192 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 251
P++S KSPQ G IK + +K G PD+++H+ VMPC+DKKLEA+R +
Sbjct: 240 PHLSRTKSPQALAGTLIKSVLYRKYGIPPDKVWHLAVMPCFDKKLEASRSELTSSAWLPS 299
Query: 252 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK--------------MLT 297
+ + +VD V+T E+L L Q + ++F +L PL + + +
Sbjct: 300 SSSD----PVRDVDCVITARELLMLAQSRDIHFPSLPGKPLPRSQRPRFPDRALDAFLFS 355
Query: 298 NVDDEGHLYG--VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
G G VAGSSGGY H +T + L + RN+D E L+ EG
Sbjct: 356 PRRRPGVRNGDAVAGSSGGY----LYHIMQTFAAQHPGSTLHVERGRNADVVEYLLKGEG 411
Query: 356 -KTLLKFALCYGFQNLQNIVRKVKMRKC-----------------------------DYQ 385
TL+K A YGF+N+QN+VR++K + +Y
Sbjct: 412 GNTLVKTARFYGFRNIQNLVRRLKPARASRMPGARTGVARRPGGVAAAAKAGGGADAEYA 471
Query: 386 FVEVMACPSGCLNGGGQIK 404
+VEVMACP GC NGGGQIK
Sbjct: 472 YVEVMACPGGCTNGGGQIK 490
>gi|449305199|gb|EMD01206.1| hypothetical protein BAUCODRAFT_29654 [Baudoinia compniacensis UAMH
10762]
Length = 602
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 233/483 (48%), Gaps = 100/483 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----QVSTSSKQQ---AEPVKISLK 57
S L DL+DFI P C+ ++ + PD +V+T + A P +ISL
Sbjct: 1 MSAILSADDLNDFINPGVACIKPVETLPKQQPDNASDTYEVTTEDRANSGTAPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK-------------------GKAVIISLSP 98
DCLACSGC+TSAE V++ QS E L +++ K + S+SP
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHGEVLDTLDRYRELRAPWMDATDGGDTSDAKVFVASVSP 120
Query: 99 QSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFDTSCSRDLTLIEACN 147
Q+RASLA + I+ + ++ L + G DT+ R++ L+ A +
Sbjct: 121 QARASLAATYNITEREAGYMISQLLSGPHGLRSGGAQGAGFTWTIDTNAMREVALVAAAD 180
Query: 148 EFIARYKQSQESDDERSNS-SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
E +Q++ + S+ P+L+SACPGWICYAEK ++ILP++S +KSPQ G
Sbjct: 181 E-------AQQAFNAPSDGLKRPVLTSACPGWICYAEKTH-AHILPHLSKLKSPQALTGT 232
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
IK + +K G P++++H+ VMPC+DKKLEA+R + + + EG + +VD
Sbjct: 233 LIKTVLAKKFGIPPEKVWHMAVMPCFDKKLEASRGEL-----TSHTWHGQEGDAVRDVDC 287
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKML------TNVD------DEGH------LYGV 308
V+T E+L L + + + F L +PL + NVD GH
Sbjct: 288 VITARELLMLAESRNIRFPNLPRAPLSEQYAPPFPDANVDRFLNSRRRGHKRKREEADAE 347
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGF 367
G+SGGY V + G ++ H RN D E A L G+ + + A YGF
Sbjct: 348 IGTSGGYLHHVLKTQQALHPGSILSRHRG----RNVDVSEYAVLSSSGQEVFRAARYYGF 403
Query: 368 QNLQNIVRKVKMRKC--------------------------DYQFVEVMACPSGCLNGGG 401
+N+QN+VR++K K +Y +VEVMACP GC NGGG
Sbjct: 404 RNIQNLVRRLKPAKASRLPGATRKPGGARKPGAASGGTNEGEYAYVEVMACPGGCTNGGG 463
Query: 402 QIK 404
QIK
Sbjct: 464 QIK 466
>gi|398410453|ref|XP_003856577.1| hypothetical protein MYCGRDRAFT_66934 [Zymoseptoria tritici IPO323]
gi|339476462|gb|EGP91553.1| hypothetical protein MYCGRDRAFT_66934 [Zymoseptoria tritici IPO323]
Length = 617
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 158/498 (31%), Positives = 235/498 (47%), Gaps = 114/498 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----QVSTSSKQQAE----PVKISL 56
S L DL+DFI P C+ ++ + P + +V+T K A P +ISL
Sbjct: 1 MSAILSADDLNDFINPGVACIKPVETLPKQQPPEDSGAYEVTTEEKVNANTVAPPAQISL 60
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINK------------------------GKAV 92
DCLACSGC+TSAE V++ QS E L +++ GK
Sbjct: 61 TDCLACSGCVTSAEAVLVSLQSHGEVLDTLDRYKELSIPAQEDGTVTLEGTSQQEEGKIF 120
Query: 93 IISLSPQSRASLAEHFGISPLQVFKKLTTFL-KSLGVKS----------IFDTSCSRDLT 141
+ S+SPQ+RASLA + ++ + ++ L LGVKS + DT+ R+ +
Sbjct: 121 VASVSPQARASLAATYNVTEREAGHMISQLLCGPLGVKSGGQNGSGFAWVLDTNAMREAS 180
Query: 142 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
L+ A +E E + P+++SACPGWICYAEK +ILP++S +KSPQ
Sbjct: 181 LVAAADEVEESLVTLAEGQKK------PVITSACPGWICYAEKTH-PHILPHLSKLKSPQ 233
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
G +K + +K G P ++H+ VMPC+DKKLEA+R + + + +G +
Sbjct: 234 ALTGVMVKSVLAKKFGIAPQNVWHLAVMPCFDKKLEASRGEL-----TSHSWHGQDGDSV 288
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN------VDD-------------E 302
+VD V+T E+L L + + ++F AL +SP+ + T ++D E
Sbjct: 289 RDVDCVITARELLMLAESRDISFPALPKSPVAREFTPAFPDIVMNDYLFRSPRGQKRKRE 348
Query: 303 GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLK 360
+ G+SGGY + + G I+ H RNSD E L G+T+ +
Sbjct: 349 EGITASIGTSGGYLHHILKTQQARHPGSEIQAHRG----RNSDVAEYTLVDPTSGETVFR 404
Query: 361 FALCYGFQNLQNIVRKVKMRKC----------------------------------DYQF 386
A YGF+N+QN+VR++K K DY +
Sbjct: 405 AARYYGFRNIQNLVRRLKPPKASRMPGASRKPGVVRRSAAGTTGSPASAAASGNGADYAY 464
Query: 387 VEVMACPSGCLNGGGQIK 404
VEVMACP GC NGGGQIK
Sbjct: 465 VEVMACPGGCTNGGGQIK 482
>gi|408398645|gb|EKJ77774.1| hypothetical protein FPSE_02008 [Fusarium pseudograminearum CS3096]
Length = 575
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 237/478 (49%), Gaps = 92/478 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQ-----VSTSSKQQAE----PVKIS 55
S L DL+DFI+P C+ ++ P + Q V +Q P +IS
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPSAPPPQSQSLETEVILDGQQPTANPNAPAQIS 60
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV----------------------- 92
L DCLACSGC+TSAE V++ QS E L+ ++ A+
Sbjct: 61 LTDCLACSGCVTSAEAVLVSLQSHAEVLTTLDSAPALRLVTDDSGKFTVEGLEDENAKLF 120
Query: 93 IISLSPQSRASLAE--HFGISPLQVFKKLTTFLKSL-GVKS----------IFDTSCSRD 139
+ S+SPQ+RA+LA G+S QV L + GV S + DT+ +R+
Sbjct: 121 VASVSPQTRANLAAACGAGVSEAQVGHMLDNLFRGPEGVASGGKYNNEFAWVVDTNTARE 180
Query: 140 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 199
TL+ +E + SQ + + + P+L+S+CPGW+CYAEK ++LP+IS VKS
Sbjct: 181 ATLVLGADEV---HNPSQSTP---ATPAKPILASSCPGWVCYAEKTH-PHVLPHISKVKS 233
Query: 200 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 259
PQ +G +K + + LG P I+H+ +MPC+DKKLEA+RE+ + ++ E G
Sbjct: 234 PQALMGTLLKTTLSRTLGIAPSRIWHLAIMPCFDKKLEASREELTEDVWAEGEI---RGR 290
Query: 260 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH-------LYGV---- 308
+ +VD V+T+ E+L L + + +NF + ++PL K D + H L G
Sbjct: 291 GVRDVDCVITSKEILMLAESRGMNFFNVPKTPLSKSNPFPDPKLHDFLFPRRLPGNPPRE 350
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 368
AG+SGG + H K+ + + RN D E ++ V G+ + + A YGF+
Sbjct: 351 AGTSGG----LLWHILKSRAAQTPGAEIVHTRGRNVDVAEYSIVVNGEPVFRAARYYGFR 406
Query: 369 NLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQIK 404
N+QN+VR++K K +Y +VEVMACP GC NGGGQIK
Sbjct: 407 NIQNLVRRLKPAKPSRMPGGKPFGSARKPAGKAGSLEYSYVEVMACPGGCTNGGGQIK 464
>gi|259511482|sp|A6RR15.2|NAR1_BOTFB RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
Length = 572
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 238/482 (49%), Gaps = 102/482 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---DKPQVSTSSK----QQAEPVKISLK 57
S L DL+DFI+P C+ ++ P ++ ++S ++ P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAAKPSADNELEISFNTDAPLPSDLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK-----------------------GKAVII 94
DCLACSGC+TSAE V++ QS E LS ++ GK +
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLSQLDSAPGIRLHKSATGTGVSVEGLEQGGKIYVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLI 143
S+SPQSRAS+A FG++ + + L G+K+ + DT+ +R+ L+
Sbjct: 121 SVSPQSRASIAATFGVTEREAGYMIEHLLSGPKGIKNRAVYRNAFQWVVDTNITREACLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E IA ++E+ P+L+S+CPGW+CYAEK ++LP++S +KSPQ
Sbjct: 181 LGAEEVIASMNGTEETKK-------PILTSSCPGWVCYAEKTH-PHVLPHLSRMKSPQAL 232
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G IK + +KLG P+ I+HV VMPC+DKKLEA+RE+ D+ E G+ +
Sbjct: 233 MGTLIKTTLSRKLGISPERIWHVAVMPCFDKKLEASREELT---DAVWEGTGTRGVR--D 287
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPL---------DKMLTN------VDDEGHLYGV 308
VDSV+T+ E+L L + ++F L +PL D L + +
Sbjct: 288 VDSVITSKELLMLADSRRIDFSKLPRTPLPSSSHIPFPDPTLNSFLFPSNRRSSSNGSRD 347
Query: 309 AGSSGG---YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALC 364
AGSSGG YA F K + I+G RN+D + + + G LLK A
Sbjct: 348 AGSSGGNLHYALHYFASQHKGSSVQTIKG-------RNADVVDYTVVADNGDILLKAARY 400
Query: 365 YGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQ 402
YGF+N+QN+VR++K + DY +VEVMACP GC NGGGQ
Sbjct: 401 YGFRNIQNLVRRLKPARPSRMPGGKPIGSARRPNGKATGPDYTYVEVMACPGGCTNGGGQ 460
Query: 403 IK 404
IK
Sbjct: 461 IK 462
>gi|425766147|gb|EKV04773.1| Iron-sulfur cluster assembly associated protein Nar1, putative
[Penicillium digitatum Pd1]
gi|425774549|gb|EKV12852.1| Iron-sulfur cluster assembly associated protein Nar1, putative
[Penicillium digitatum PHI26]
Length = 604
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 238/529 (44%), Gaps = 98/529 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLK----KATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ ++ K + K D +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPPKDSKKTEDAYEVTTEDKVQPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN-----------------------KGKAVII 94
DCLACSGC+TSAE V++ QS E L+ ++ +GK +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHPEIPLVHEHHGVTVNNIEDSGEGKIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GIS + + L G + DT+ R+ L+
Sbjct: 121 SVSPQVRASLATIYGISEKEAGYMINQLLSGPQGLRGGGKHRNGFTWVVDTNAMREAVLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSP 200
+E S +S+ LP +LSSACPGWICYAEK +ILP++S +KSP
Sbjct: 181 LTADEVSDSLSSGDSSTAGQSDDPLPKRPILSSACPGWICYAEKT-HPFILPHLSRLKSP 239
Query: 201 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 260
Q G +K + + LG P I+H+ VMPC+DKKLEA+RE+ Q + E
Sbjct: 240 QALSGTFLKTVLSKSLGVNPSRIWHLAVMPCFDKKLEASREELTDVSWRQGNSTASETQP 299
Query: 261 IPEVDSVLTTGEVLDLIQLKAVNFEA-------------LEESPLDKMLTNVDDEGHLYG 307
+ +VD V+T E+L L + + + E LD L+
Sbjct: 300 VRDVDCVITARELLSLASSRGFSLPSLPLQPLPSSFTPPFPEKILDSFLSFERSRAKQSI 359
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYG 366
G+SGGY H + L RN D E V L EG T+LK A YG
Sbjct: 360 ATGTSGGY----LHHILMNFQARNPGSELVINRGRNVDVVEYVLLSQEGPTILKAARYYG 415
Query: 367 FQNLQNIVRKVKMRK--------------------------------CDYQFVEVMACPS 394
F+N+QN+VRK+K + DY +VEVMACP
Sbjct: 416 FRNIQNLVRKLKPARVSRLPGAKPAARPATGRRQPISRNNVTTSSSGADYAYVEVMACPG 475
Query: 395 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
GC NGGGQI+ + KE I + + + L+ M P + + DE
Sbjct: 476 GCTNGGGQIRV---EDAKEAIGSSQGMALDASMKPSPHEQRAWLARVDE 521
>gi|145229679|ref|XP_001389148.1| cytosolic Fe-S cluster assembly factor nar1 [Aspergillus niger CBS
513.88]
gi|259511266|sp|A2Q9A9.1|NAR1_ASPNC RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|134055257|emb|CAK43843.1| unnamed protein product [Aspergillus niger]
Length = 597
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 163/482 (33%), Positives = 232/482 (48%), Gaps = 90/482 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---DKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ ++ K+P D P +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAKDPSKTDNPYEVTTEDKVQPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN-----------------------KGKAVII 94
DCLACSGC+TSAE V++ QS E L+ ++ +G+ +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHPELPLNREDGTITQELGTASDEGRVFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GI+ + + FL G + DT+ R+ L+
Sbjct: 121 SVSPQVRASLAATYGITEKEATYMIHQFLSGPHGLRAGGKNGSGFTWVADTNVLREAVLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQLGSYILPYISSVKS 199
+E S +S ++ P+LSSACPGWICYAEK ++LP++S +KS
Sbjct: 181 LTADEVGETLTTSPDSPSTNGATNTLPKRPILSSACPGWICYAEKT-HPFVLPHLSRLKS 239
Query: 200 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG- 258
PQ G K + + LG I+H+ VMPC+DKKLEA+RE+ D+ + +DE
Sbjct: 240 PQALAGTFFKTVLSKSLGIPASRIWHLAVMPCFDKKLEASREELT---DASWLSAKDEDH 296
Query: 259 LEIPEVDSVLTTGEVLDL-----IQLKAVNFEALEES---PLDKMLTN----VDDEGHLY 306
+ +VD V+TT E+L L I L + ++L +S P M N
Sbjct: 297 TAVRDVDCVITTREMLSLASSRGISLPNLPLKSLPQSYIPPFPDMTLNDFLFSKSSPGQS 356
Query: 307 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCY 365
AG+SGGY H +T + + + RN+D E L E +LK A Y
Sbjct: 357 AAAGTSGGY----LHHVLQTFQARNPGSEIVTQRGRNADVVEYTLMSSEHTPILKAARYY 412
Query: 366 GFQNLQNIVRKVKMRKC-----------------------DYQFVEVMACPSGCLNGGGQ 402
GF+N+QN+VRK+K + DY +VEVMACP GC NGGGQ
Sbjct: 413 GFRNIQNLVRKLKPARASRLPGGNRRLPVGRGAASGSSGTDYAYVEVMACPGGCTNGGGQ 472
Query: 403 IK 404
I+
Sbjct: 473 IR 474
>gi|223999199|ref|XP_002289272.1| narf-like protein [Thalassiosira pseudonana CCMP1335]
gi|220974480|gb|EED92809.1| narf-like protein [Thalassiosira pseudonana CCMP1335]
Length = 468
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 255/493 (51%), Gaps = 65/493 (13%)
Query: 11 IGDLSDFIAPSQNCVVSLKKATFKNPDKPQVST--------SSKQQAEPVKISLKDCLAC 62
+ ++ D++ PSQ CV L F P K ST S+ + ++L DCL+C
Sbjct: 1 LNNVDDYLGPSQACVNPL----FTAPSKSANSTEAVVLGDGSNGTKKTKATVTLSDCLSC 56
Query: 63 SGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV--FKKLT 120
SGC+TSAE V++ S+++ + K ++ ++S S A L H + + + L+
Sbjct: 57 SGCVTSAEAVLMSHHSIEKLREPLQPKKLIVFTISAASLADLYRHLYLETEETEGDRDLS 116
Query: 121 TFLK-SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD---DERSNSSLPMLSSACP 176
FL G K + D S+ ++L+E+ EF RYK+ Q + + ++ LPML+S+CP
Sbjct: 117 IFLNIEFGAKMVIDGILSQQISLLESAEEFCYRYKKQQVKNIIVTNKQSTPLPMLASSCP 176
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
G++C EK ++P +SSVKSP GA +K+ + IYHV +MPC+DKKL
Sbjct: 177 GFVCLVEKT-APKVVPLLSSVKSPMAVSGALLKNTTSSVNAVSNNSIYHVAIMPCHDKKL 235
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA R DF ++ + + Y + I EVD VLTTGE+L+++ KA++ + D+
Sbjct: 236 EAGRNDFAWERQTLLQ-YSNSASIINEVDLVLTTGELLEILT-KAISTATATTTSEDEKY 293
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI--EGHLEFKTIRNSDFREVALEVE 354
+++ + ++G SG YA+ +FR A + LFG + + L +K + + E
Sbjct: 294 NDLELDTGIHG----SGSYADFIFRFATRKLFGCTLPSDKPLPWKGSTSFSSSLASSEQS 349
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRK-------CDYQFVEVMACPSGCLNGGGQI---- 403
++L+FA YGF+N+Q I++ + K Y +VE+MACPSGC NGGGQI
Sbjct: 350 ATSVLRFATAYGFKNVQLILQNLSKEKQTSNSMDSGYDYVEIMACPSGCPNGGGQIGSLG 409
Query: 404 -KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEK---------- 452
+ P ++ + + +T+ + P++R ++E+ + EK
Sbjct: 410 KRETPRETKERVRRTVSVV-------------PVLR--FNEYTKATVYEKDPFNDGCFGR 454
Query: 453 -AKKHVHTEYHPV 464
A++ +HT +H V
Sbjct: 455 TARRLLHTRFHVV 467
>gi|331245344|ref|XP_003335309.1| hypothetical protein PGTG_17089 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314299|gb|EFP90890.1| hypothetical protein PGTG_17089 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 571
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 179/498 (35%), Positives = 245/498 (49%), Gaps = 89/498 (17%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCV------------VSLKKATFKNPDKPQVSTSSKQQA 49
S FS +L + DL+D++ PSQ C SL K D P ST +
Sbjct: 7 SNSFSHSLNLIDLNDYLGPSQLCTKPNIPTTQEQQQPSLSKTQILLDDHPPPSTKVTESL 66
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHF 108
+I+L DCLACSGCITS+E++++ QS+ E I + + I+S+S S AS +
Sbjct: 67 PKAQITLNDCLACSGCITSSESILVSLQSVLEVRKEIQQPNRYPIVSISSHSLASFVAYN 126
Query: 109 GISPLQV-FKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNS 166
+ L FK L F +S + DTS S+ L L+E+ EF ++ +E+ + S
Sbjct: 127 QLDSLSTGFKVLKKYFTRSHNFALVLDTSFSQRLHLLESQREFKEHRRRQKEA--KVSGG 184
Query: 167 SLPMLSSACPGWICYAEKQLG-SYILPYISSVKSPQQTIGATIKH-HICQKLGFRPDE-I 223
P+L+S+CP WICYAEK G + IL IS VKS QQ G+ +K + +G E I
Sbjct: 185 KAPLLASSCPAWICYAEKTQGKNGILEMISRVKSAQQIQGSLLKSPRFAESVGLGSAEPI 244
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
YHV VM CYDKKLEA+R DF DEG I +VD VLTT EV ++IQ +
Sbjct: 245 YHVCVMSCYDKKLEASRSDF----------QSDEG--IKDVDCVLTTREVQEMIQEDGFD 292
Query: 284 -FEALEES-----PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG-HL 336
+A +E+ LD + H + SSGGY + R + T G +I+ L
Sbjct: 293 ILQAAQETEESGQTLDSQVGIPIWIDHPPPIGSSSGGYLFNLLRASVPTDRGNIIDRLRL 352
Query: 337 EFKTIRNSDFREVALEV---------------EGKTLLKFALCYGFQNLQNIVRKVK--- 378
R SD+ E L++ E +TL AL YGF+NLQN++RK+
Sbjct: 353 TVDRKRGSDYVEYRLQLAHASSSQDIQDIPTQEPETLFYGALFYGFKNLQNLIRKIAPPS 412
Query: 379 -------------MRKCD------------YQFVEVMACPSGCLNGGGQI----KPKPGQ 409
R+ D Y FVEVMACPSGC+NGGGQI +P P
Sbjct: 413 SSSTTNPRARIMGRRRKDQGVEAAKEADRTYDFVEVMACPSGCVNGGGQIPFGSQPGPSS 472
Query: 410 SP---KELIKTLETIYLE 424
S K+LI LE +Y +
Sbjct: 473 SAPTNKQLIAKLEQVYFQ 490
>gi|452848147|gb|EME50079.1| hypothetical protein DOTSEDRAFT_165043 [Dothistroma septosporum
NZE10]
Length = 612
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 237/486 (48%), Gaps = 100/486 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQA----EPVKISL 56
S L + DL+DFI+P C+ + K+ + + +V+T K + P +ISL
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPIETLPKQQPIDDANPYEVTTEEKVNSGTIVPPAQISL 60
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINK--------------------GKAVIISL 96
DCLAC+GC+TSAE V++ QS E L ++K K + S+
Sbjct: 61 TDCLACAGCVTSAEAVLVSLQSHGEVLDTLDKFPELKVDADVTNTSVEGSVEKKLFVASV 120
Query: 97 SPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLIEA 145
SPQSRAS+A + ++ + + L G++S I DT+ R+ TL+
Sbjct: 121 SPQSRASIAATYNVTEREAGYMIAQLLSGPAGLRSGGQHGSGFTWIVDTNVMREATLVAV 180
Query: 146 CNEFIARYKQSQESDDERSNSSL--PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
+E +QS + E S + P+++SACPGWICYAEK +ILP++S +KSPQ
Sbjct: 181 ADEV----QQSNTAPIEGSTEAQKKPVITSACPGWICYAEKTH-PHILPHLSKLKSPQAL 235
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
G +K + +K G P ++H+ VMPC+DKKLEAAR + + + EG + +
Sbjct: 236 TGVLLKSVLAKKYGMSPQNVWHLAVMPCFDKKLEAARSEL-----TSHTWHGQEGEAVRD 290
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT------NVDD------------EGHL 305
VD V+T E+L L + + ++F L + PL L V+D G
Sbjct: 291 VDCVITARELLMLAESRDISFPRLPKQPLSGDLAPDFPEPAVNDFLFSRQRGQKRKRGQE 350
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALC 364
G+SGGY H +T + + + + RN+D E + ++ +G+ + K A
Sbjct: 351 TDTIGTSGGY----LWHILQTKRAQHVGSQVMSQRGRNNDVSEYSVVDADGRAVFKAARY 406
Query: 365 YGFQNLQNIVRKVKMRKC--------------------------DYQFVEVMACPSGCLN 398
YGF+N+QN+VR++K K +Y +VEVMACP GC N
Sbjct: 407 YGFRNIQNLVRRLKPAKASRMPGASRKAGTSRRPGGAAMGGNEGEYSYVEVMACPGGCTN 466
Query: 399 GGGQIK 404
GGGQIK
Sbjct: 467 GGGQIK 472
>gi|358367009|dbj|GAA83629.1| iron-sulfur cluster assembly associated protein Nar1 [Aspergillus
kawachii IFO 4308]
Length = 597
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 236/483 (48%), Gaps = 92/483 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ ++ K+P K +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAKDPSKTDYPYEVTTEDKVQPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN-----------------------KGKAVII 94
DCLACSGC+TSAE V++ QS E L+ ++ +G+ +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHPELLINRENGTLAQGLGTDNDEGRVFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GI+ + + FL G + DT+ R+ L+
Sbjct: 121 SVSPQVRASLAATYGITEKEASYMIQQFLSGPHGLRAGGKNGSGFTWVVDTNVLREAVLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQLGSYILPYISSVKS 199
+E + +S S ++ P+LSSACPGWICYAEK ++LP++S +KS
Sbjct: 181 LTADEVGETLTTNPDSPSTTSATNTLPKRPILSSACPGWICYAEKT-HPFVLPHLSRLKS 239
Query: 200 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG- 258
PQ G K + + LG I+H+ VMPC+DKKLEA+RE+ D+ + +DE
Sbjct: 240 PQALAGTFFKTVLSKSLGIPASRIWHLAVMPCFDKKLEASREELT---DASWLSAKDEDH 296
Query: 259 LEIPEVDSVLTTGEVLDL-----IQLKAVNFEAL--------EESPLDKMLTNVDDEGHL 305
+ +VD V+TT E+L L + L + F++L ++ L++ L + G
Sbjct: 297 TPVRDVDCVITTRELLSLASSRGLALPNLPFKSLPQAYIPPFPDTTLNEFLFSKCSPGQ- 355
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALC 364
AG+SGGY H +T + + + RN+D E L E +LK A
Sbjct: 356 STAAGTSGGY----LHHVLQTFQARNPGSEIVTQRGRNADVVEYTLMSSEHTPILKAARY 411
Query: 365 YGFQNLQNIVRKVKMRKC-----------------------DYQFVEVMACPSGCLNGGG 401
YGF+N+QN+VRK+K + DY +VEVMACP GC NGGG
Sbjct: 412 YGFRNIQNLVRKLKPARASRLPGGNRRMPVGRGAASGGSGTDYAYVEVMACPGGCTNGGG 471
Query: 402 QIK 404
QI+
Sbjct: 472 QIR 474
>gi|342879391|gb|EGU80642.1| hypothetical protein FOXB_08865 [Fusarium oxysporum Fo5176]
Length = 576
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 239/485 (49%), Gaps = 104/485 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV--------------VSLKKATFKNPDKPQVSTSSKQQAE 50
S L DL+DFI+P C+ SL+ + +P + ++
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAAPPPQPQSLETEVILDGQQPATNPNA----- 55
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------ 92
P +ISL DCLACSGC+TSAE V++ QS E L+ ++ A+
Sbjct: 56 PAQISLTDCLACSGCVTSAEAVLVSLQSHAEVLTTLDSAPALKLVTDDSGKFRVEGLEEE 115
Query: 93 -----IISLSPQSRASLAE--HFGISPLQVFKKLTTFLKS-LGVKS----------IFDT 134
++S+SPQ+RA+LA G+S L + G+ S + DT
Sbjct: 116 NAKLFVVSVSPQTRANLAAACGGGVSEGDAGHMLDNLFRGPSGIASGGKYHNEFTWVVDT 175
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R+ TL+ +E + S E + + P+L+S+CPGW+CYAEK ++LP+I
Sbjct: 176 NTAREATLVLGADEVLG------TSQTETATPAKPILASSCPGWVCYAEKTH-PHVLPHI 228
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
S VKSPQ +G +K + + LG P I+H+ VMPC+DKKLEA+RE+ ++ ++ ET
Sbjct: 229 SKVKSPQALMGTLLKTTLSRTLGIAPGRIWHLAVMPCFDKKLEASREELTEEVWAEGET- 287
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD------------ 301
G + +VD V+T+ E+L L + + ++F + ++PL K LT D
Sbjct: 288 --RGRGVRDVDCVITSKEILMLAESRGLSFFNIPKTPLQSKSLTPFPDPKLHEFLFPRIR 345
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKF 361
G+ AG+SGG + H K+ + + RN D E ++ V G+ + +
Sbjct: 346 TGNAPREAGTSGG----LLYHILKSRAAQTPGAEIVHTRGRNVDVAEYSILVNGEPVFRA 401
Query: 362 ALCYGFQNLQNIVRKVK---------------MRK-------CDYQFVEVMACPSGCLNG 399
A YGF+N+QN+VR++K RK +Y +VEVMACP GC NG
Sbjct: 402 ARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARKPAGKAASLEYSYVEVMACPGGCTNG 461
Query: 400 GGQIK 404
GGQIK
Sbjct: 462 GGQIK 466
>gi|327295534|ref|XP_003232462.1| iron-sulfur cluster assembly associated protein Nar1 [Trichophyton
rubrum CBS 118892]
gi|326465634|gb|EGD91087.1| iron-sulfur cluster assembly associated protein Nar1 [Trichophyton
rubrum CBS 118892]
Length = 597
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 159/488 (32%), Positives = 233/488 (47%), Gaps = 99/488 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSK---QQAEPVKISLKDCL 60
S L DL+DFI+P C+ ++ K + P +V+T K Q P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKKQEENPYEVTTEDKLEEQNPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----------------GKAVIISLSPQSRASL 104
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASL
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDANPEIRLDGGGRAEAGDGKLFVASVSPQVRASL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACNEFIARY 153
A +GIS + FL G + DT+ R L + E
Sbjct: 121 AATYGISEKNAGYMIEQFLSGPNGLRAGGQHGSGFAWVVDTNIMRQAVLELSTAEVTESL 180
Query: 154 KQ--SQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
S S DE SLP +L+S+CPGWICYAEK ++LP++S +KSPQ G +
Sbjct: 181 NAAASTTSHDESGKFSLPNRPILASSCPGWICYAEKTH-PHVLPHLSRLKSPQALTGTFL 239
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-----IPE 263
K I +KL P +++H+ +MPC+DKKLEA+R++ + ++R E L+ I +
Sbjct: 240 KTIISKKLNISPSQVWHLAIMPCFDKKLEASRQELT------DVSWRGEALDMASSPIRD 293
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT------------NVDDEGHLY--GVA 309
VD V+T+ E+L L + ++ +L PL L+ + ++ H A
Sbjct: 294 VDCVITSKELLMLASSRNISLPSLPREPLPTHLSTPFPDQTIAQFLSTNNTLHFTQPAAA 353
Query: 310 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQ 368
G SGGY H T K + ++ + RN+D E L G+ ++K A YGF+
Sbjct: 354 GPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSAAGEPIIKAARYYGFR 409
Query: 369 NLQNIVRKVKMRKC--------------------------------DYQFVEVMACPSGC 396
N+QN+VRK+K + ++ +VEVMACP GC
Sbjct: 410 NIQNLVRKMKPARASRLPGSRVNGPGARARSAPVSNGKPGAPTPPTEFSYVEVMACPGGC 469
Query: 397 LNGGGQIK 404
NGGGQI+
Sbjct: 470 TNGGGQIR 477
>gi|325262533|ref|ZP_08129270.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
gi|324032365|gb|EGB93643.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
Length = 580
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 219/422 (51%), Gaps = 40/422 (9%)
Query: 51 PVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
P + L D C++C CIT+ T + EK +D+ L+ I ++ K VI+ +P RA+L E
Sbjct: 182 PFDMGLGDTSCVSCGQCITACPTGALYEKDFIDDVLAAIADESKHVIVQPAPSVRAALGE 241
Query: 107 HFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
FG P+ V K+ L+ +G +FDT S DLT++E +EF+ R + +
Sbjct: 242 EFGY-PMGTDVEGKMAAALRRIGFDKVFDTDFSADLTIMEEAHEFLGRVQ---------N 291
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
LPM++S PGWI Y E L ++SS KSPQQ GA K + +K+G P +I
Sbjct: 292 GGVLPMMTSCSPGWIKYCEHYYPDQ-LEHLSSCKSPQQMFGAIAKTYYAEKMGIDPKDIV 350
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
V+VMPC KK E R+D + +P+VD +TT E+ LI+ +NF
Sbjct: 351 CVSVMPCTAKKFEINRDD-------------QDAAGVPDVDISITTRELARLIRKVGINF 397
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
+L + D L G ++G ++GG E R A +TL G+ + LEF +R +
Sbjct: 398 RSLPDEGFDDPLGESTGAGVIFG---ATGGVMEAALRTAVETLTGEEL-ASLEFNEVRGT 453
Query: 345 D-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ +E V G + K A+ G N + I+ KV+ + DY F+E+M CP GC+NGGGQ
Sbjct: 454 EGIKEATYNVAGMDV-KVAVASGLSNAKQIMDKVRAGEADYHFIEIMCCPGGCVNGGGQP 512
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHT 459
+ E ++ + L + A + NP ++ LYDE+L +PGSEKA +HT
Sbjct: 513 QVHADVRNYEDVRAIRAKALYDNDKAKTLRKSHDNPSIKKLYDEFLGEPGSEKAHHILHT 572
Query: 460 EY 461
Y
Sbjct: 573 SY 574
>gi|440631831|gb|ELR01750.1| hypothetical protein GMDG_00126 [Geomyces destructans 20631-21]
Length = 579
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 239/474 (50%), Gaps = 87/474 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK----ATFKNPDKPQVSTSSKQQAE--PVKISLKD 58
S L DL+DFI+P C+ ++ A NP + + S + ++ P +ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPPPAADDNPYELKFSNEAPLPSDLPPAEISLTD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNIN--------------------KGKAVIISLSP 98
CLACSGC+TSAE V++ QS E L+ ++ G+ I S+SP
Sbjct: 61 CLACSGCVTSAEAVLVSLQSHAEVLNALDTAPALQLGQDGGIQSGVGNQDGRIYIASVSP 120
Query: 99 QSRASLAEHFGISPLQ---VFKKLTTFLKSL--------GVKSIFDTSCSRDLTLIEACN 147
QSRAS++ +G+S + + ++L + + L G + + DT+ +R+ L+
Sbjct: 121 QSRASISAAYGVSEREAGYMIEQLLSGPQGLRIGGEQKNGFQWVVDTNVAREACLVLGAE 180
Query: 148 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
E A + +E + P+L+S+CPGWICYAEK ++LP++S +KSPQ +G
Sbjct: 181 EVAASMQGRKE------GPTKPILTSSCPGWICYAEKTH-PHVLPHLSRLKSPQALMGTL 233
Query: 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 267
+K + +KL PD I+HV VMPC+DKKLEA+RE+ E + +G+ +VD V
Sbjct: 234 LKTTLSKKLKISPDMIWHVAVMPCFDKKLEASREELTDIHWDGEASPGTKGVR--DVDCV 291
Query: 268 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY-------------GVAGSSGG 314
LT+ E++ L + + ++F AL S L + D H + AG+SGG
Sbjct: 292 LTSKELIMLAESRGIDFAALPRSQLSTSQSFPDQALHNFLFPPRSSIQSNGDRAAGTSGG 351
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV-ALEVEGKTLLKFALCYGFQNLQNI 373
+ ++ A G I + RN+D + + G+TL K A YGF+N+QN+
Sbjct: 352 NLHYILQYFASQHPGSTI----QTTRGRNADVMDYNIISSSGETLFKTARYYGFRNIQNL 407
Query: 374 VRKVK---------------MRK--------CDYQFVEVMACPSGCLNGGGQIK 404
VRK+K RK + +VEVMACP GC NGGGQIK
Sbjct: 408 VRKLKPVRPSRMPGGRPVGAARKPVGKAGSSVELSYVEVMACPGGCTNGGGQIK 461
>gi|67594873|ref|XP_665926.1| Fe-hydrogenase [Cryptosporidium hominis TU502]
gi|54656799|gb|EAL35695.1| Fe-hydrogenase [Cryptosporidium hominis]
Length = 560
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 242/492 (49%), Gaps = 106/492 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVK----------- 53
FS +++ +L D++ SQ+C+VSL + K+ KP+++ +A+ K
Sbjct: 2 FSTAVKLANLDDYLESSQDCIVSL--LSDKDDTKPKIAVMRPAKAQDNKDDKKSGTSDKA 59
Query: 54 -ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
+++ DCLACSGC+TSAE +LE Q++ EF++ + + + ++S+S QS +S A H
Sbjct: 60 TVNVADCLACSGCVTSAEAKLLEDQNVSEFMNILKQKRLTVVSISNQSCSSFACHLNCDL 119
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ + +KL+ K +G + + +++ S ++L+E EFI+RYK + S LPM+
Sbjct: 120 ITIQRKLSGLFKHIGARFVMNSTISEYISLLETKYEFISRYK---------AKSDLPMII 170
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH---HICQKLGF----------- 218
S CPGWICY+EK L S +LP +S V+S QQ G IK I +L F
Sbjct: 171 SHCPGWICYSEKSLNSSVLPLLSKVRSAQQLQGILIKTLTLEIYNQLLFLYKFRLSNSYG 230
Query: 219 ----------------RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 262
+I+HV +MPC+DKKLE+ R S D+ P
Sbjct: 231 TNMNIKTTFTQNDDFVEQSDIFHVAIMPCHDKKLESTRS-------SLSLKSSDKNSSCP 283
Query: 263 EVDSVLTTGEVLDLIQLKAVN-FEALEESPLDKMLTNVD-------------DEGHLYG- 307
EVD VL T EV ++I+L N + E+PLD + N + E ++
Sbjct: 284 EVDIVLATSEVGEIIKLAGFNSLLDVPEAPLDNLWLNQNFQITKKHNLSLLITENYVSNQ 343
Query: 308 ------------VAGSSGGYAETVFRHAAKTLFGKVIEG--HLEFKTIRNSDFREVALEV 353
+SGG+ E + R A K L G I+ L F ++N D E A +
Sbjct: 344 ILNQFPWLIPSYFNSNSGGFCEYIIRSAIKELAGDNIDNKVQLPFNKLKN-DILE-AKYI 401
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRK---------------CDYQFVEVMACPSGCLN 398
+ L + L YGF+ +Q+I RK+ ++K +Y +E MACP+GC++
Sbjct: 402 KNNVELNYCLVYGFRAIQSISRKLNLQKNASQHTQYKQNVVNHVNYHLIEAMACPTGCVS 461
Query: 399 GGGQIKPKPGQS 410
GGGQI + Q+
Sbjct: 462 GGGQILSQNDQN 473
>gi|385809115|ref|YP_005845511.1| hydrogenase subunit HydA [Ignavibacterium album JCM 16511]
gi|383801163|gb|AFH48243.1| Hydrogenase subunit HydA [Ignavibacterium album JCM 16511]
Length = 575
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 225/415 (54%), Gaps = 39/415 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
+++ DC+ C CI T L EK S+ E S + ++ K I ++P RAS+ E + +
Sbjct: 184 LNVSDCILCGQCILVCPTAALREKSSVKEVASALYDRKKYCIAQVAPAVRASIGEEYNM- 242
Query: 112 PL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
PL V L T L+ LG K +FDT+ + DLT++E +E I R + + SLP
Sbjct: 243 PLGTDVTGLLVTGLRRLGFKKVFDTNFAADLTIMEEASELINRIQ---------NGGSLP 293
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ YAE IL +IS+ KSP + GA +K + +K+G P +I+ V++M
Sbjct: 294 MFTSCCPGWVKYAEMN-NPEILDHISTCKSPHEMEGAVLKTYYAKKMGIDPKDIFVVSIM 352
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E+AR + +EE +P+VD+VLTT E++ ++ ++F L E
Sbjct: 353 PCTVKKYESARPEL------KEEV-------LPDVDAVLTTRELVRFFKIAGIDFNDLPE 399
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
S D L ++ G+SGG E R A L GK ++ LEF+ IR + +E
Sbjct: 400 SEFDNPLGESTGAAAIF---GTSGGVMEAALRTAYWKLTGKELD-KLEFEEIRGMEGVKE 455
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ + G + A+ G N++ IV +V K + F+EVMACP GC+NGGGQ
Sbjct: 456 ATVNINGMD-INIAVVNGIGNVKQIVEEVAAGKSKHHFIEVMACPGGCINGGGQ---PIH 511
Query: 409 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q P++++K ++ +Y EN +N V++LY E+ +P S KA + +HTEY
Sbjct: 512 QKPEKVMKRVKVLYQIDENAKHRRSHENESVKTLYREFFGEPNSHKAHEILHTEY 566
>gi|66361834|ref|XP_627881.1| narf-like protein nuclear prelamin A recognition factor
[Cryptosporidium parvum Iowa II]
gi|23213133|gb|AAN05787.1| putative Fe-hydrogenase [Cryptosporidium parvum]
gi|46227593|gb|EAK88528.1| narf-like protein nuclear prelamin A recognition factor
[Cryptosporidium parvum Iowa II]
Length = 560
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 239/490 (48%), Gaps = 102/490 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL--------KKATFKNPDKPQVSTSSKQQ--AEPVKI 54
FS +++ +L D++ SQ+C+VSL K P K Q + K+ ++ +
Sbjct: 2 FSTAVKLANLDDYLESSQDCIVSLLSDKDDTKPKIAVMRPAKAQGNKDDKKSGTSDKATV 61
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
++ DCLACSGC+TSAE +LE Q++ EF++ + + + ++S+S QS +S A H +
Sbjct: 62 NVADCLACSGCVTSAEAKLLEDQNVSEFMNILKQKRLTVVSISNQSCSSFACHLNCDLIT 121
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ +KL+ K +G + + +++ S ++L+E EFI+RYK + S LPM+ S
Sbjct: 122 IQRKLSGLFKHIGARFVMNSTISEYISLLETKYEFISRYK---------AKSDLPMIISH 172
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH---HICQKLGF------------- 218
CPGWICY+EK L S +LP +S V+S QQ G IK I +L F
Sbjct: 173 CPGWICYSEKSLNSSVLPLLSKVRSAQQLQGILIKTLTLEIYNQLLFLYKFRLSNSYRTN 232
Query: 219 --------------RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
+I+HV +MPC+DKKLE+ R S D+ PEV
Sbjct: 233 MNVKSTFTQNDNFVEQSDIFHVAIMPCHDKKLESTRS-------SLSLKSSDKNSSCPEV 285
Query: 265 DSVLTTGEVLDLIQLKAVN-FEALEESPLDKMLTNVD-------------DEGHLYG--- 307
D VL T EV ++I+L N + E+PLD + N + E ++
Sbjct: 286 DIVLATSEVGEIIKLAGFNSLLDVPEAPLDNLWLNQNFQITKKHNLSLLITENYVSNQIL 345
Query: 308 ----------VAGSSGGYAETVFRHAAKTLFGKVIEG--HLEFKTIRNSDFREVALEVEG 355
+SGG+ E + R A K L G I+ L F ++N D E A ++
Sbjct: 346 NQFSWLIPSYFNSNSGGFCEYIIRSAIKELAGDHIDNKVQLPFNKLKN-DILE-AKYIKN 403
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRK---------------CDYQFVEVMACPSGCLNGG 400
L + L YGF+ +Q+I RK+ ++K +Y +E MACP+GC++GG
Sbjct: 404 NVELNYCLAYGFRAIQSISRKLNLQKNASQNTQYKQSVVNHVNYHLIEAMACPTGCVSGG 463
Query: 401 GQIKPKPGQS 410
GQI + Q+
Sbjct: 464 GQILSQNDQN 473
>gi|242768782|ref|XP_002341639.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724835|gb|EED24252.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 577
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 232/481 (48%), Gaps = 91/481 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +K+T + +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGLACIKPVESLPQKSTASAENAYEVTTEDKVQPENQAPTQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-----------------------II 94
DCLACSGC+TSAE V++ QS E L+ ++ + +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHRPAPLIVAQDGDISASREIEPNERIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLI 143
S+SPQ RASLA +GIS + + L+ G++S + DT R + L
Sbjct: 121 SVSPQVRASLAATYGISERKAGYMIDQLLRGPQGLRSGGKHGNGFTWVIDTDVLRQMVLT 180
Query: 144 EACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
A E + SS P+LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 LAAQEVTESLSAPSTCKESGRYSSPKRPILSSACPGWICYAEKT-HPHVLPHLSRLKSPQ 239
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
G +K + + LG P +I+H+ VMPC+DKKLEA+RE+ + ++ +
Sbjct: 240 ALAGTFVKSILSRALGIAPSQIWHLAVMPCFDKKLEASREELTEA--AWNKSSNTSQSPV 297
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEALEESPL-------------DKML---TNVDDEGHL 305
+VD V+T+ E+L L + ++ +L PL D L T+ +
Sbjct: 298 RDVDCVITSRELLMLASSRNISLPSLPLKPLALAYAPHFPDSTIDSFLFSGTHTSKQSLA 357
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALC 364
Y G+SGGY + + G IE + RNSD E +L E +T++K A
Sbjct: 358 Y---GTSGGYLYYILSSHQERHPGSRIEA----QRGRNSDVVEYSLVSESNETIMKAARY 410
Query: 365 YGFQNLQNIVRKVKMRKC---------------------DYQFVEVMACPSGCLNGGGQI 403
YGF+N+QN+VRK+K + DY FVEVMACP GC NGGGQI
Sbjct: 411 YGFRNIQNLVRKMKPARASRLPGAKRGTTGSGVNGSSGLDYAFVEVMACPGGCTNGGGQI 470
Query: 404 K 404
+
Sbjct: 471 R 471
>gi|328854173|gb|EGG03307.1| hypothetical protein MELLADRAFT_49568 [Melampsora larici-populina
98AG31]
Length = 494
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 166/461 (36%), Positives = 233/461 (50%), Gaps = 68/461 (14%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK-ATFKNPDKPQVSTSSKQQAEPV----------- 52
FSP+L DL+D++ PSQ C+ + + P T + P+
Sbjct: 6 FSPSLI--DLNDYLGPSQLCIKPTESIEPIIKEEVPSAVTEIRLDEVPITLSAPEPLPQK 63
Query: 53 --KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--IISLSPQSRASLAEHF 108
+ISL DCLACSGC+TS+E+V++ QS + S + + IIS+S QS ASL+ ++
Sbjct: 64 KAEISLTDCLACSGCVTSSESVLVALQSTSQLYSTLKADTTLYPIISISTQSLASLSAYY 123
Query: 109 GISPLQVFKKLTTF-LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
+S F+ L TF ++ +G +FD+ S+ L+L + EF ++Q Q ++
Sbjct: 124 KLSISATFESLKTFFIEIIGFHLVFDSKFSQALSLYQTKLEFDRIHRQKQAQVKPKT--- 180
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL-GFRPDEIYHV 226
+LSS+CPGWICYAEK IL IS+VKSPQ G+ IK KL P++IYHV
Sbjct: 181 --ILSSSCPGWICYAEKTQTEDILNMISNVKSPQAIQGSIIKSTQFSKLINVTPNQIYHV 238
Query: 227 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA 286
T+M CYDKKLEA+R+DF+ + E +D VD VLTTGEV + L+ +F+
Sbjct: 239 TIMSCYDKKLEASRQDFI----NSESGVKD-------VDLVLTTGEVQKM--LEEHHFDL 285
Query: 287 LEESPLDKMLTNVDDEGHLYGVA---------------------GSSGGYAETVFRHAAK 325
L S +T + L SSGGY + + +
Sbjct: 286 LSASSSQPQITQTSNAPKLSSEVTSHTPSTSIIPTWIDRPESERSSSGGYLQFIIQSILD 345
Query: 326 TLFGKVIEGHLEFKTIRNSDFREVALEVEG----KTLLKFALCYGFQNLQNIVRKVKMRK 381
K + L + R D+ E + K L K A CYGF+NLQN+VRK K
Sbjct: 346 E--HKSADATLTIERKRGRDYCEYLITTTDQDTKKVLFKGAHCYGFKNLQNLVRKFK-GP 402
Query: 382 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 422
DY VEVMACPSGCLNGGGQI ++ + LE+ Y
Sbjct: 403 TDY--VEVMACPSGCLNGGGQISKPDHYETRDWLDELESKY 441
>gi|242768778|ref|XP_002341638.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724834|gb|EED24251.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 593
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 232/481 (48%), Gaps = 91/481 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +K+T + +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGLACIKPVESLPQKSTASAENAYEVTTEDKVQPENQAPTQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-----------------------II 94
DCLACSGC+TSAE V++ QS E L+ ++ + +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHRPAPLIVAQDGDISASREIEPNERIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLI 143
S+SPQ RASLA +GIS + + L+ G++S + DT R + L
Sbjct: 121 SVSPQVRASLAATYGISERKAGYMIDQLLRGPQGLRSGGKHGNGFTWVIDTDVLRQMVLT 180
Query: 144 EACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
A E + SS P+LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 LAAQEVTESLSAPSTCKESGRYSSPKRPILSSACPGWICYAEKT-HPHVLPHLSRLKSPQ 239
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
G +K + + LG P +I+H+ VMPC+DKKLEA+RE+ + ++ +
Sbjct: 240 ALAGTFVKSILSRALGIAPSQIWHLAVMPCFDKKLEASREELTEA--AWNKSSNTSQSPV 297
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEALEESPL-------------DKML---TNVDDEGHL 305
+VD V+T+ E+L L + ++ +L PL D L T+ +
Sbjct: 298 RDVDCVITSRELLMLASSRNISLPSLPLKPLALAYAPHFPDSTIDSFLFSGTHTSKQSLA 357
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALC 364
Y G+SGGY + + G IE + RNSD E +L E +T++K A
Sbjct: 358 Y---GTSGGYLYYILSSHQERHPGSRIEA----QRGRNSDVVEYSLVSESNETIMKAARY 410
Query: 365 YGFQNLQNIVRKVKMRKC---------------------DYQFVEVMACPSGCLNGGGQI 403
YGF+N+QN+VRK+K + DY FVEVMACP GC NGGGQI
Sbjct: 411 YGFRNIQNLVRKMKPARASRLPGAKRGTTGSGVNGSSGLDYAFVEVMACPGGCTNGGGQI 470
Query: 404 K 404
+
Sbjct: 471 R 471
>gi|238486138|ref|XP_002374307.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus flavus NRRL3357]
gi|259511265|sp|B8N122.1|NAR1_ASPFN RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|220699186|gb|EED55525.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus flavus NRRL3357]
Length = 562
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 231/496 (46%), Gaps = 105/496 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C V +L K N P +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKNESSNSQNPYEVTTEDKVQPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------KGKAVI 93
DCLACSGC+TSAE V++ QS E L+ ++ + + +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAYPELPLTQNHNGPYTGSSDALDGESRIFV 120
Query: 94 ISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTL 142
S+SPQ RASLA +GIS + + FL G + DT+ RD L
Sbjct: 121 ASVSPQVRASLAATYGISEKEATYMIDQFLSGPHGLRAGGKHGSGFSWVVDTNVMRDAIL 180
Query: 143 IEACNEFIARYKQ-SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
+ +E K+ S + + + P+LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 VLTADEVSETLKEPSARAISKDTLPKRPVLSSACPGWICYAEKT-HPFVLPHLSRLKSPQ 239
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
G +K + + LG P ++H+ +MPC+DKKLEA+RE +L + D G+ +
Sbjct: 240 ALTGTFLKTVLSKALGVPPSRVWHLAIMPCFDKKLEASRE----ELTDVSWSPLDGGVPL 295
Query: 262 PE-------VDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVDD 301
E VD V+TT E+L L + ++ L + L+ L +
Sbjct: 296 TESNKPVRDVDCVITTRELLTLASSRGISLPTLPLKSLAPSYTPHFPDETLNAFLFRKQN 355
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLK 360
AG+SGGY H KT K + + RN+D E +L G+ L+K
Sbjct: 356 GSEQSMEAGTSGGY----LHHVLKTFQAKNPGSEIVTQRGRNADVVEYSLMSPGGEPLMK 411
Query: 361 FALCYGFQNLQNIVRKVKMRKC--------------------------------DYQFVE 388
A YGF+N+QN+VRK+K + DY +VE
Sbjct: 412 AARYYGFRNIQNLVRKLKPARVSRLPGARVPAASAGGNRRQPISRNSASAGSGTDYAYVE 471
Query: 389 VMACPSGCLNGGGQIK 404
VMACP GC NGGGQI+
Sbjct: 472 VMACPGGCTNGGGQIR 487
>gi|350296459|gb|EGZ77436.1| iron hydrogenase [Neurospora tetrasperma FGSC 2509]
Length = 581
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 263/577 (45%), Gaps = 132/577 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTS-------------SKQQAEP 51
S L + DL+DFI+P C+ ++ P V++S +K A P
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPIETLPTAAPPAGDVNSSLEVEVILDGQQPEAKSNAPP 60
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+ISL DCLACSGC+TSAE V++ QS +E L+ ++ A+
Sbjct: 61 AEISLTDCLACSGCVTSAEAVLVSLQSHNEVLNMLDSAPALKLVGPDTNGKYSVEGLENS 120
Query: 93 -----IISLSPQSRASLAE--HFGISPLQVFKKLTT-FLKSLGVKS----------IFDT 134
+ S+SPQSRASLA G++ Q + + FL G+ + DT
Sbjct: 121 AAKLYVASVSPQSRASLAAACGNGVTEQQAGRMIEQLFLGEQGLARGGEWGNKFTWVVDT 180
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R+ TL+ +E + + ++ P+L+++CPGW+CYAEK Y+LP++
Sbjct: 181 NTAREATLVLGSDEVLGGLIAPSD------KAATPVLTASCPGWVCYAEKTH-PYVLPHL 233
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQE 251
S VKSPQ +G +K + + L P+ I+H+ VMPC+DKKLEA+RE D ++ D +
Sbjct: 234 SRVKSPQALMGTLLKTSLSRILDIAPERIWHLAVMPCFDKKLEASREELTDAIWARDGK- 292
Query: 252 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE--------- 302
G + +VD V+T+ EVL L + +F +L S + D+
Sbjct: 293 -----PGRGVRDVDCVITSKEVLMLAASRGFDFFSLSAS-MPPQTPRFPDQLIHDFLFRP 346
Query: 303 GHLYGV--AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLL 359
GH AG+SGG + RH L K ++ RN+D E L E G+ +
Sbjct: 347 GHRQQSREAGTSGGNMHFILRH----LQAKNPGSQIQTVPGRNADVVEYKLIAEAGEVMF 402
Query: 360 KFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCL 397
K A YGF+N+QN+VRK+K K DY +VEVMACP GC
Sbjct: 403 KAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSAKRPAGKSSGLDYGYVEVMACPGGCT 462
Query: 398 NGGGQIK-------------PKPG-QSPKELIKTLETIYLEN------------VMLADP 431
NGGGQIK KPG Q KE K ++ Y ++ D
Sbjct: 463 NGGGQIKVDDQVVVDRKGLAVKPGPQEQKEWQKEVDEAYFSGDEQGSSAQDESLDLVVDG 522
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+R++ W G + +K +T Y VV +
Sbjct: 523 ISPSHIRNVLTHWSTLTGIQ-LEKLAYTSYREVVSDV 558
>gi|378729425|gb|EHY55884.1| ferredoxin hydrogenase [Exophiala dermatitidis NIH/UT8656]
Length = 641
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 233/481 (48%), Gaps = 93/481 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKPQVSTSSK---QQAEPVKISLKD 58
S L DL+DFI+P C V +L K NP +V+T K Q P ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKQEDYNPY--EVTTEDKVAAQNPAPASISLTD 58
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNIN------------------------------- 87
CLACSGC+TSAE V++ QS E L+ ++
Sbjct: 59 CLACSGCVTSAEAVLVSLQSHTEVLNTLDSYESLNIQNLLQQQSKNGLGHINHAHTSTPI 118
Query: 88 --KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL---KSLGVKSIFDTSCSRDL-- 140
K + S+SPQ RASLA +GIS + + FL + L + ++S + +
Sbjct: 119 PQNAKLFVASVSPQVRASLAATYGISERKAGFMIEQFLSGAQGLRIGGAHNSSFTYVVDT 178
Query: 141 -TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 199
L EAC A +E + SN P+L+SACPGWICYAEK ++LP++SS+KS
Sbjct: 179 NQLREACLVLGA-----EEVSESLSNKKRPVLTSACPGWICYAEK-THPHVLPHLSSLKS 232
Query: 200 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 259
PQ G +K + + LG P +I+H+ +MPC+DKKLEA+RE+ + E + +
Sbjct: 233 PQALSGTLLKSVLSKTLGIHPSQIWHLAIMPCFDKKLEASREELTDRWWRPESQQQGQTT 292
Query: 260 EIP--EVDSVLTTGEVLDL-----IQLKAVNFEALEESPL-DKMLTNV--------DDEG 303
P +VD V+T+ E+L L IQL ++ LE+ P D ++N
Sbjct: 293 TQPVRDVDCVITSRELLSLAEARNIQLSSLPLTPLEQPPFPDARISNFLFPSPRRRQQRA 352
Query: 304 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEG-KTLLKF 361
AGSSGGY + G I + RN+D E L +G +TL+K
Sbjct: 353 EQSPNAGSSGGYLYHIMATEQANHPGSTI----SIQRGRNADVVEYFLFSADGTQTLMKC 408
Query: 362 ALCYGFQNLQNIVRKVKMRK------------------CDYQFVEVMACPSGCLNGGGQI 403
A YGF+N+QN+VRK+K K DY +VEVMACP GC NGGGQI
Sbjct: 409 ARYYGFRNIQNLVRKLKPAKQSRLPGAARRATAATGGAADYAYVEVMACPGGCTNGGGQI 468
Query: 404 K 404
K
Sbjct: 469 K 469
>gi|453089698|gb|EMF17738.1| iron hydrogenase [Mycosphaerella populorum SO2202]
Length = 615
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/498 (31%), Positives = 232/498 (46%), Gaps = 119/498 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK-------ATFKNPDKPQVSTSSKQQ----AEPVK 53
S L DL+DFI P C+ ++ A N + +V+T K A P +
Sbjct: 1 MSAILSADDLNDFINPGVACIKPVETLPKQQPPADDANANPYEVTTEEKVNSGTIAPPAQ 60
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK------------------------- 88
ISL DCLACSGC+TSAE +++ QS E L ++K
Sbjct: 61 ISLTDCLACSGCVTSAEAILVSLQSHAEVLDTLDKYHEMKVPGDESSAPCTHTKNVESDT 120
Query: 89 ----GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFD 133
GK + S+SPQ+RASLA + +S ++ L GVKS + D
Sbjct: 121 CCGNGKIFVASISPQARASLAATYNVSERDAGYMVSQLLSGPHGVKSAGKHNSGFAWVVD 180
Query: 134 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 193
T+ R+ +L+ A +E D + P+++SACPGWICYAEK S+ILP+
Sbjct: 181 TNAMREASLVAAADEV----------DQLQDGQKKPIITSACPGWICYAEKTH-SHILPH 229
Query: 194 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 253
+S +KSPQ G IK + +K G P ++H+ +MPC+DKKLEA+R + T
Sbjct: 230 LSRLKSPQALTGVLIKSVLAKKYGIDPKNVWHLAIMPCFDKKLEASRSELT------SHT 283
Query: 254 YRDE-GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH--LYGVA- 309
+ E G + +VD V+T E+L L + + ++F L + P+ + + + L+G +
Sbjct: 284 WHGETGDAVRDVDCVITARELLMLAESRDISFPGLPKHPVTDLAPFPEPRVNEFLFGRSR 343
Query: 310 ------------GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGK 356
G+SGGY H KT H++ + RN D E + + +G
Sbjct: 344 GQKRKREDATSIGTSGGY----LWHVLKTQQTHHPGSHIKVQRGRNQDVSEYSVVNADGL 399
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKC------------------------------DYQF 386
+ K A YGF+N+QN+VRK+K K DY +
Sbjct: 400 AVFKAARYYGFRNIQNLVRKLKPAKASRMPGASSTGRRVGGTRRPGGATKAGDDSQDYAY 459
Query: 387 VEVMACPSGCLNGGGQIK 404
VEVMACP GC NGGGQIK
Sbjct: 460 VEVMACPGGCTNGGGQIK 477
>gi|260946019|ref|XP_002617307.1| hypothetical protein CLUG_02751 [Clavispora lusitaniae ATCC 42720]
gi|238849161|gb|EEQ38625.1| hypothetical protein CLUG_02751 [Clavispora lusitaniae ATCC 42720]
Length = 527
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 175/541 (32%), Positives = 256/541 (47%), Gaps = 106/541 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV------VSLKKATFKNP-------DKPQVSTSSKQQA-E 50
S L DL+DFI+P C+ +K+ K P + P+VS S +
Sbjct: 1 MSAILSADDLNDFISPGLACIQPVEKLPPIKEGKAKPPGSELGEAEDPEVSIESDHSTLK 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVII-SLSPQSRASLAEHFG 109
+ISL DCLACSGCITSAE V++ + S ++ S + K + + + S+S Q+RASLA +G
Sbjct: 61 QAQISLADCLACSGCITSAEEVLVAQHSHEQLRSVLKKNEHIFVASISHQTRASLAHAYG 120
Query: 110 ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL- 168
+ K + F + LG K + T+ R L++++ ++Q E+ +SL
Sbjct: 121 RPVSDMDKLIVAFFRRLGFKYVVGTAVGRKLSMVQ----------EAQRILREKDTNSLK 170
Query: 169 -PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
P+LSS CPGW+ YAEK ++LPY+S VKSPQQ G +K ++L ++IYHV
Sbjct: 171 GPVLSSVCPGWVLYAEKT-HPHVLPYMSPVKSPQQITGCILKTLSAEELAVPREKIYHVA 229
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
VMPC+DKKLEAAR + DE L P+VD V+T E++ L + + +
Sbjct: 230 VMPCFDKKLEAARPEA------------DESLSGPDVDCVITAKELVSLAEAMGHSIVEI 277
Query: 288 EESPLDKM------------LTNVDDEGHLY----------------GVAGS-SGGYAET 318
ES K + DD L+ +GS SGG+A
Sbjct: 278 SESDDKKNSKLKSEQGDMVDCNSKDDPSSLFRSCAPSRFPFAELSWANDSGSESGGWAHN 337
Query: 319 VFRHAAKTLFGKVIEGH--LEFKTI----RNSDFREVALEVEGKTLLKFALCYGFQNLQN 372
R A + K + + +F RNSD E L G TL A+ GF+N+QN
Sbjct: 338 YLRLAQQHFISKNPDTYQAADFSIACVGGRNSDVYEWRLTHGGSTLASAAVVNGFRNIQN 397
Query: 373 IVRKVKMRK-------------------------CDYQFVEVMACPSGCLNGGGQIK-PK 406
+VR++K K CDY VE+MACP GC+NGGGQI P+
Sbjct: 398 LVRRLKTSKTPLVRRRRKRTEAEESAEESADPARCDY--VEIMACPGGCINGGGQISAPQ 455
Query: 407 PGQSPKELIKTLETIYLENVMLADPFKNP-LVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
P Q KE + + Y ++ D P L++ L D + ++ T++H V
Sbjct: 456 PTQE-KEWLTEVRAAY-ADINTVDLVSTPELIQRLVDASKKFEQDVSPQRLFQTQFHEVE 513
Query: 466 K 466
K
Sbjct: 514 K 514
>gi|169771319|ref|XP_001820129.1| cytosolic Fe-S cluster assembly factor nar1 [Aspergillus oryzae
RIB40]
gi|121803716|sp|Q2UJY8.1|NAR1_ASPOR RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|83767988|dbj|BAE58127.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871618|gb|EIT80775.1| nuclear architecture related protein [Aspergillus oryzae 3.042]
Length = 607
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 231/496 (46%), Gaps = 105/496 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C V +L K N P +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKNESSNSQNPYEVTTEDKVQPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------KGKAVI 93
DCLACSGC+TSAE V++ QS E L+ ++ + + +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAYPELPLTQNHNGPYTGSSDALDGESRIFV 120
Query: 94 ISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTL 142
S+SPQ RASLA +GIS + + FL G + DT+ RD L
Sbjct: 121 ASVSPQVRASLAATYGISEKEATYMIDQFLSGPHGLRAGGKHGSGFSWVVDTNVMRDAIL 180
Query: 143 IEACNEFIARYKQ-SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
+ +E K+ S + + + P+LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 VLTADEVSETLKEPSARAISKDTLPKRPVLSSACPGWICYAEKT-HPFVLPHLSRLKSPQ 239
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
G +K + + LG P ++H+ +MPC+DKKLEA+RE +L + D G+ +
Sbjct: 240 ALTGTFLKTVLSKALGVPPSRVWHLAIMPCFDKKLEASRE----ELTDVSWSPLDGGVPL 295
Query: 262 PE-------VDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVDD 301
E VD V+TT E+L L + ++ L + L+ L +
Sbjct: 296 TESNKPVRDVDCVITTRELLTLASSRGISLPTLPLKSLAPSYTPHFPDETLNAFLFRKQN 355
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLK 360
AG+SGGY H KT K + + RN+D E +L G+ L+K
Sbjct: 356 GSEQSMEAGTSGGY----LHHVLKTFQAKNPGSEIVTQRGRNADVVEYSLMSPGGEPLMK 411
Query: 361 FALCYGFQNLQNIVRKVKMRKC--------------------------------DYQFVE 388
A YGF+N+QN+VRK+K + D+ +VE
Sbjct: 412 AARYYGFRNIQNLVRKLKPARVSRLPGARVPAASAGGNRRQPISRNSASAGSGTDFAYVE 471
Query: 389 VMACPSGCLNGGGQIK 404
VMACP GC NGGGQI+
Sbjct: 472 VMACPGGCTNGGGQIR 487
>gi|358387153|gb|EHK24748.1| hypothetical protein TRIVIDRAFT_208599 [Trichoderma virens Gv29-8]
Length = 515
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 157/486 (32%), Positives = 230/486 (47%), Gaps = 107/486 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTS-----------SKQQAEPVK 53
S L DL+DFI+P C+ ++ P PQ S + S A P +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETL----PAAPQQSANENEVILDGQQPSASAATPAQ 56
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------------------- 92
ISL DCLACSGC+TSAE +++ QS E +S ++ A+
Sbjct: 57 ISLTDCLACSGCVTSAEAILVSLQSHTEVISTLDAAPALRVVGPDASGNFTVEGLENEDA 116
Query: 93 ---IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLK-----------SLGVKSIFDTSC 136
+ S+S Q+RA+LA G +S Q L L+ + + + D +
Sbjct: 117 KLFVASVSSQTRANLAAACGRDVSESQAGYMLENLLRGPDGLAKGGKWNTSFEWVVDINV 176
Query: 137 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 196
+RD TL + E ++ S S P+L+S+CPGW+CYAEK Y+LP++S
Sbjct: 177 ARDATLALSAAEVLSSPTPGV------SRPSQPILASSCPGWVCYAEKTH-PYVLPHLSK 229
Query: 197 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 256
VKSPQ +G +K + +KLG P I+HV +MPC+DKKLEA+RE+ +E +
Sbjct: 230 VKSPQALMGTILKTSLSRKLGIPPSRIWHVAIMPCFDKKLEASREELT------DEVWAR 283
Query: 257 EGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEES----PLDKMLTNVDDEGHLYG-- 307
GL I +VD V+T+ EVL L + + ++F +S P + + L+
Sbjct: 284 SGLPGKGIRDVDCVITSKEVLMLAESRGLDFFTFSKSASSLPPSIPFPDEKIQAFLFPSK 343
Query: 308 -------VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 360
VAGSSGG + H +T + ++ RN D E + V G+ + K
Sbjct: 344 GSRNPSRVAGSSGG----LLHHILQTRAAQTPGSEIQIVRGRNVDVIEYFVTVNGEPIFK 399
Query: 361 FALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLN 398
A YGF+N+QN+VR++K + DY +VEVMACP GC N
Sbjct: 400 AARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPAGKAASLDYGYVEVMACPGGCTN 459
Query: 399 GGGQIK 404
GGGQIK
Sbjct: 460 GGGQIK 465
>gi|336267324|ref|XP_003348428.1| hypothetical protein SMAC_02924 [Sordaria macrospora k-hell]
gi|380092082|emb|CCC10350.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 581
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 232/486 (47%), Gaps = 103/486 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTS-------------SKQQAEP 51
S L + DL+DFI P C+ ++ P + S +K A P
Sbjct: 1 MSAILSVDDLNDFINPGVACIKPIETLPTAAPAVSNANPSNEFEVILDGQQPEAKGNAPP 60
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+ISL DCLACSGC+TSAE +++ QS +E L+ ++ A+
Sbjct: 61 AEISLTDCLACSGCVTSAEAMLVSLQSHNEVLNVLDSAPALQLVGPDADGKYSVKGLEND 120
Query: 93 -----IISLSPQSRASLAE--HFGISPLQVFKKLTT-FLKSLGVKS----------IFDT 134
+ S+SPQSRASLA G++ Q + + FL G+ + DT
Sbjct: 121 AAKLYVASVSPQSRASLAAACGNGVTEQQAGRMIEQLFLGEQGLARGGNWGNKFTWVVDT 180
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R+ TL+ +E + S ++ P+L+++CPGW+CYAEK Y+LP++
Sbjct: 181 NTAREATLVLGSDEVLG------GSIAPSDKAATPILTASCPGWVCYAEKTH-PYVLPHL 233
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQE 251
S VKSPQ +G +K + + L PD I+H+ VMPC+DKKLEA+RE D V+ D +
Sbjct: 234 SRVKSPQALMGTLLKTSLSRILNISPDRIWHLAVMPCFDKKLEASREELTDAVWAGDGK- 292
Query: 252 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV--- 308
G + +VD V+T+ E+L L + +NF L S + D H +
Sbjct: 293 -----PGRGVRDVDCVITSKEILMLAASRGLNFFGLPASAPSQHPQFPDPSIHDFLFRPG 347
Query: 309 -------AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLK 360
AG+SGG + R+ L K + ++ RN+D E + E G+ L K
Sbjct: 348 HRQQSREAGTSGGNMHFILRN----LQAKNVGSQIQTVPGRNADVVEYKVIAESGEVLFK 403
Query: 361 FALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCLN 398
A YGF+N+QN+VRK+K K DY +VEVMACP GC N
Sbjct: 404 AARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSAKRPAGKANGLDYGYVEVMACPGGCTN 463
Query: 399 GGGQIK 404
GGGQIK
Sbjct: 464 GGGQIK 469
>gi|85117692|ref|XP_965304.1| hypothetical protein NCU03204 [Neurospora crassa OR74A]
gi|74618782|sp|Q7SGW5.1|NAR1_NEUCR RecName: Full=Cytosolic Fe-S cluster assembly factor nar-1;
AltName: Full=Nuclear architecture-related protein 1
gi|28927111|gb|EAA36068.1| hypothetical protein NCU03204 [Neurospora crassa OR74A]
Length = 581
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 234/487 (48%), Gaps = 105/487 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTS-------------SKQQAEP 51
S L + DL+DFI+P C+ ++ P ++S +K A P
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPIETLPTAAPPAGDANSSLEVEVILDGQQPEAKSNAPP 60
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+ISL DCLACSGC+TSAE V++ QS +E L+ ++ A+
Sbjct: 61 AEISLTDCLACSGCVTSAEAVLVSLQSHNEVLNMLDSAPALKLVGPDANGKHSVQGLENS 120
Query: 93 -----IISLSPQSRASLAE--HFGISPLQVFKKLTT-FLKSLGVKS----------IFDT 134
+ S+SPQSRASLA G++ Q + + FL G+ + DT
Sbjct: 121 DAKLYVASVSPQSRASLAAACGNGVTEQQAGRMIEQLFLGEQGLARGGKWGNKFTWVVDT 180
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R+ TL+ +E + + ++ P+L+++CPGW+CYAEK Y+LP++
Sbjct: 181 NTAREATLVLGSDEVLGGLIAPSD------KAATPVLTASCPGWVCYAEKTH-PYVLPHL 233
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQE 251
S VKSPQ +G +K + + L P+ I+H+ VMPC+DKKLEA+RE D V+ D +
Sbjct: 234 SRVKSPQALMGTLLKTSLSRILDIAPERIWHLAVMPCFDKKLEASREELTDAVWAGDGK- 292
Query: 252 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE--------- 302
G + +VD V+T+ EVL L + +F +L S + D+
Sbjct: 293 -----PGRGVRDVDCVITSKEVLMLAASRGFDFFSLSAS-MPPQTPRFPDQLIHDFLFRP 346
Query: 303 GHLYGV--AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLL 359
GH AG+SGG + RH L K ++ RN+D E L E G+ +
Sbjct: 347 GHRQQSREAGTSGGNMHFILRH----LQAKNPGSQIQTVPGRNADVVEYKLIAEAGEVMF 402
Query: 360 KFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCL 397
K A YGF+N+QN+VRK+K K DY +VEVMACP GC
Sbjct: 403 KAARYYGFRNIQNLVRKLKPAKTSRMPGGKPFGSAKRPAGKASGLDYGYVEVMACPGGCT 462
Query: 398 NGGGQIK 404
NGGGQIK
Sbjct: 463 NGGGQIK 469
>gi|336464368|gb|EGO52608.1| hypothetical protein NEUTE1DRAFT_91105 [Neurospora tetrasperma FGSC
2508]
Length = 581
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 234/487 (48%), Gaps = 105/487 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTS-------------SKQQAEP 51
S L + DL+DFI+P C+ ++ P V++S +K A P
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPIETLPTAAPSAGDVNSSLEVEVILDGQQPEAKSNAPP 60
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+I L DCLACSGC+TSAE V++ QS +E L+ ++ A+
Sbjct: 61 AEILLTDCLACSGCVTSAEAVLVSLQSHNEVLNMLDSAPALKLVGPDANGKYSVEGLENS 120
Query: 93 -----IISLSPQSRASLAE--HFGISPLQVFKKLTT-FLKSLGVKS----------IFDT 134
+ S+SPQSRASLA G++ Q + + FL G+ + DT
Sbjct: 121 DAKLYVASVSPQSRASLAAACGNGVTEQQADRMIEQLFLGEQGLARGGKWGNKFTWVVDT 180
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R+ TL+ +E + + ++ P+L+++CPGW+CYAEK Y+LP++
Sbjct: 181 NTAREATLVLGSDEVLGGLIAPSD------KAATPVLTASCPGWVCYAEKTH-PYVLPHL 233
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQE 251
S VKSPQ +G +K + + L P+ I+H+ VMPC+DKKLEA+RE D V+ D +
Sbjct: 234 SRVKSPQALMGTLLKTSLSRILDIAPERIWHLAVMPCFDKKLEASREELTDAVWAGDGK- 292
Query: 252 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE--------- 302
G + +VD V+T+ EVL L + +F +L S + D+
Sbjct: 293 -----PGRGVRDVDCVITSKEVLMLAASRGYDFFSLSAS-MPPQTPRFPDQLIHDFLFRP 346
Query: 303 GHLYGV--AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLL 359
GH AG+SGG + RH L K ++ RN+D E L E G+ +
Sbjct: 347 GHRQQSREAGTSGGNMHFILRH----LQAKNPGSQIQTVPGRNADVVEYKLTAEAGEVMF 402
Query: 360 KFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCL 397
K A YGF+N+QN+VRK+K K DY +VEVMACP GC
Sbjct: 403 KAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSAKRPAGKASGLDYGYVEVMACPGGCT 462
Query: 398 NGGGQIK 404
NGGGQIK
Sbjct: 463 NGGGQIK 469
>gi|322698495|gb|EFY90265.1| hypothetical protein MAC_03780 [Metarhizium acridum CQMa 102]
Length = 600
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 234/501 (46%), Gaps = 118/501 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-------------------VSLKKATFKNPDKPQVSTSS 45
S L + DL+DFI+P C+ +L+ + +P+V
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPIETLPAAPAPPQGQEQGRALETEVILDGQQPRVGGGG 60
Query: 46 KQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------- 92
A +ISL DCLACSGC+TSAE V++ QS E LS ++ +
Sbjct: 61 GD-ASAAQISLTDCLACSGCVTSAEAVLVSLQSHAEVLSTLDSAPGLRIVDDGGRGGRPR 119
Query: 93 ------------IISLSPQSRASLAE--HFGISPLQVFKKLTTFLKS------------L 126
+ S+SPQ+RA+LA G+S Q + L L+S
Sbjct: 120 VDGLENEDARLFVASVSPQTRANLAAACGRGVSEAQAGRMLERLLRSERWGLAGGGRWRN 179
Query: 127 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 186
G + DT+ +R++ L+ +E + R + + R P+LSSACPGW+CYAEK
Sbjct: 180 GFTWVVDTNVAREVALVLGADEVLGRTTRPGGNAPAR-----PILSSACPGWVCYAEKTH 234
Query: 187 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 246
++LP++S VKSPQ G +K + +KLG P I+H+ VMPC+DKKLEA+RE+
Sbjct: 235 -PHVLPHLSRVKSPQALTGTILKTTLSRKLGIPPSRIWHLAVMPCFDKKLEASREELT-- 291
Query: 247 LDSQEETYRDEGLE---IPEVDSVLTTGEVLDLIQLKAVNF-------EALEESPLDKML 296
+E + GL + +VD V+T+ E+L L + + +NF + S L+ +
Sbjct: 292 ----DEVWAGSGLPGRGVRDVDCVITSKEILMLAESRGLNFFDIPRDNDGTTSSLLEPAV 347
Query: 297 TNVDDEGHLY-----------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 345
D H + +AGSSGG + + A + G ++ RN+D
Sbjct: 348 PFPDARLHSFLFPARASPRVPRMAGSSGGLLYHILQCKAAQIPGA----QIQTTRGRNAD 403
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK----------------------CD 383
E + G+ + K A YGF+N+QN+VR++K + +
Sbjct: 404 VVEFVVAANGEPVFKAARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPTGKSASLE 463
Query: 384 YQFVEVMACPSGCLNGGGQIK 404
Y +VEVMACP GC NGGGQ+K
Sbjct: 464 YGYVEVMACPGGCTNGGGQLK 484
>gi|169608145|ref|XP_001797492.1| hypothetical protein SNOG_07139 [Phaeosphaeria nodorum SN15]
gi|121920428|sp|Q0UM75.1|NAR1_PHANO RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|111064670|gb|EAT85790.1| hypothetical protein SNOG_07139 [Phaeosphaeria nodorum SN15]
Length = 632
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 162/510 (31%), Positives = 233/510 (45%), Gaps = 122/510 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP---QVSTSSKQQAEPVK----ISLK 57
S L DL+DFI+P C+ ++ K D +V+T K A ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPAKPEDSSNPYEVTTEDKAAASQPPPPASISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------------ 87
DCLACSGC+TSAE V++ QS E L+ ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHSEVLTTLDTYRSLRAPWQTQNGTNGTNGTNGTTNGHST 120
Query: 88 -------------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS--- 130
+GK + S+SPQSRAS+A F +S + + L G+K+
Sbjct: 121 NGTTTNGINGHSHEGKLFVASVSPQSRASIAAVFNVSEAEAGNMIAQLLSGPSGLKTGGH 180
Query: 131 -------IFDTSCSRDLTLIEACNEFIARY--KQSQESDDERSNSSL------PMLSSAC 175
+ DT+ R+ L+ A +E + S S S ++ P+L+SAC
Sbjct: 181 QGSDFTWVLDTNVVREACLVAAADEVANALSPETSNPSTKPGSEGAIDTTPKQPILTSAC 240
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWICYAEK YILP++S +KSPQ G IK + Q+ P +I+HV +MPC+DKK
Sbjct: 241 PGWICYAEKTH-PYILPHLSRLKSPQALTGTLIKSVLSQQYNIPPSQIWHVAIMPCFDKK 299
Query: 236 LEAARED-----FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
LEA+R + ++ D+ ++ RD VD V+T E+L L + +NF +L +
Sbjct: 300 LEASRSELTSSAWLPNHDATQDPVRD-------VDCVITARELLHLASARGINFASLPRT 352
Query: 291 P-------------LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
P LD L + VAGSSGGY H +T + +
Sbjct: 353 PLSASERTPFPDPKLDAFLFPHTRRKNQDVVAGSSGGY----LYHILQTYQAQNPGSSIS 408
Query: 338 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC--------------- 382
RN+D E +L +T+++ A YGF+N+QN+VR++K K
Sbjct: 409 VSRGRNADVVEYSLVRGSETIIRAARFYGFRNIQNLVRRLKPAKASRLPGGKTGVSRKPG 468
Query: 383 --------DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQ+K
Sbjct: 469 AAAGGDVKDYAYVEVMACPGGCTNGGGQVK 498
>gi|452987683|gb|EME87438.1| hypothetical protein MYCFIDRAFT_201123 [Pseudocercospora fijiensis
CIRAD86]
Length = 605
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 232/485 (47%), Gaps = 101/485 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----QVSTSSKQQ----AEPVKISL 56
S L DL+DFI P C+ ++ + P +V+T K A P +ISL
Sbjct: 1 MSAILSADDLNDFINPGVACIKPVENLPQQQPQDSGNPYEVTTEDKVNSGTIAAPAQISL 60
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINK-----------------------GKAVI 93
DCLACSGC+TSAE V++ QS E L +++ GK +
Sbjct: 61 TDCLACSGCVTSAEAVLVSLQSHGEVLDTLDRYHEMRLPRVNGDAGCKKEQCCGDGKIFV 120
Query: 94 ISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTL 142
S+SPQ+RASLA + +S + ++ L LGV+S + DT+ R+ +L
Sbjct: 121 ASVSPQARASLAATYSVSEREAGYMISQLLSGPLGVRSGGKNGSGFAWVVDTNAMREASL 180
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
+ A E Q E + P+++S CPGW+CYAEK ++LP++S +KSPQ
Sbjct: 181 VAAAEEVEQSLVQLPEGQKK------PVITSVCPGWVCYAEKTH-PHMLPHLSKLKSPQA 233
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 262
G +K + ++ G +P ++H+ +MPC+DKKLEA+R + L + EG +
Sbjct: 234 LTGVLLKSVLAKQFGVKPQNLWHLAIMPCFDKKLEASRAELTSHL-----WHGQEGDAVR 288
Query: 263 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM--LTNVDDEGHLYGVA----------- 309
+VD V+T E+L L + + ++F L + P+ + L G+
Sbjct: 289 DVDCVITARELLMLAESRDISFPGLPKHPVGDLPPFPEPAVNEFLLGLPRGQKRKREDMD 348
Query: 310 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV-EGKTLLKFALCYG 366
G+SGGY H KT + + + + RN+D E ++ + +G+ + K A YG
Sbjct: 349 AIGTSGGY----LWHILKTKQAQHVGSQIRSQRGRNNDVSEYSVVLADGEPVFKAARYYG 404
Query: 367 FQNLQNIVRKVKMRKC---------------------------DYQFVEVMACPSGCLNG 399
F+N+QN+VRK+K K DY +VEVMACP GC NG
Sbjct: 405 FRNIQNLVRKLKPVKASRMPGATGRKFGTSRRPGAASAGGDSNDYAYVEVMACPGGCTNG 464
Query: 400 GGQIK 404
GGQIK
Sbjct: 465 GGQIK 469
>gi|428671559|gb|EKX72477.1| Fe hydrogenase large subunit, C-terminal domain containing protein
[Babesia equi]
Length = 631
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 145/517 (28%), Positives = 246/517 (47%), Gaps = 121/517 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK-----NPDKPQVST---SSKQQAEPVKISL 56
+S +++G L+D++ PS+ C++ +KK T N D+ + + S+++ V + L
Sbjct: 2 YSNAVKLGGLNDYLNPSEECILPVKKNTSSYEVKLNRDEQKGANRHPGSQKRDSRVTVGL 61
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
DCL+CSGC+TS+E ++++ + + + ++S+SPQ+ ++A +G+ P+ F
Sbjct: 62 SDCLSCSGCLTSSEEILMKNDHFVTVIEKLKNAEHGVVSISPQTVYAIAACYGLDPVIAF 121
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS-------------------- 156
KL+ + LG K+IF + + + E+ EF+ ++ S
Sbjct: 122 GKLSHLFRILGAKNIFSMNVGEMIAVHESKVEFVNKFLSSCPVNLQEDYRNGNLLPHDYA 181
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH-----H 211
Q D +++ LP++S+ CPGW YAEK L + + IS+V S Q G IK
Sbjct: 182 QNFGDLKNDRVLPIISNHCPGWTLYAEKMLDMHYIDRISAVSSSQLIQGLVIKALAHTVQ 241
Query: 212 ICQKLG---------------------------------FRPDEIYHVTVMPCYDKKLEA 238
C+ LG ++ IYHV++ PCYDK+LEA
Sbjct: 242 FCKILGDTAELMLTDFPGFHRMDKGELSILDTKTMMETEWKYKNIYHVSIAPCYDKRLEA 301
Query: 239 AREDFVFQLD-----SQEETYRDEGLE--IPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
R + + +E T +G I VD VL+T +V ++ +NFEAL E+P
Sbjct: 302 LRPQYEHDFERLLRKGRESTGEGDGARHTIKLVDDVLSTSDVQAILNHLGLNFEALSEAP 361
Query: 292 LDKMLTNVDDEGHLYGV------AGS---------------------------------- 311
LD++ +GHL + +G+
Sbjct: 362 LDEI-----SDGHLKALLKIFQESGTLSEQSLEFSKDANLSILASRHGKINLYRPSKIYC 416
Query: 312 -SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 370
SGG+AE +F+ AA+ LFG+ ++ +EF + N DF+E L LL+F + YG++N+
Sbjct: 417 QSGGFAEEIFKFAAENLFGRRVDD-VEFTSTINPDFKECILRSGDIILLRFIIAYGYRNV 475
Query: 371 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
QN+VR +K + ++E+M+CP GC NG GQ+ P
Sbjct: 476 QNVVRMLK-DSTNISYIELMSCPGGCFNGPGQVLQVP 511
>gi|153814131|ref|ZP_01966799.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756]
gi|145848527|gb|EDK25445.1| hydrogenase, Fe-only [Ruminococcus torques ATCC 27756]
Length = 595
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 222/422 (52%), Gaps = 40/422 (9%)
Query: 51 PVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
P ++ L D C+ C CI + T + EK ++D+ L+ I ++ K V++ +P RA+L E
Sbjct: 197 PFEMGLGDTSCVGCGQCIAACPTGALYEKSNIDDVLAAIADETKHVVVQPAPSVRAALGE 256
Query: 107 HFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
FG P+ V K+ L+ +G +FDT+ S DLT++E +EF+ R K +
Sbjct: 257 EFGY-PMGTDVEGKMAAALRRIGFDKVFDTNFSADLTIMEEAHEFLDRVK---------N 306
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
LP+++S PGW+ Y E L ++SS KSPQQ GA K + +K+ P++I
Sbjct: 307 KGVLPLMTSCSPGWVKYCEHYYPDQ-LDHLSSCKSPQQMFGAITKTYYAEKMNIAPEDIV 365
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
V+VMPC KK E RED +D G +P+VD +TT E+ LI+ +NF
Sbjct: 366 CVSVMPCTAKKFEIQRED------------QDAG-GVPDVDISITTRELARLIRKVGINF 412
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
+L + D L G ++G ++GG E R A + L G+ +E +EF +R +
Sbjct: 413 RSLPDEGFDDPLGESTGAGVIFG---ATGGVMEAALRTAVEELTGETLE-KVEFTEVRGT 468
Query: 345 D-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ +E V G + K A+ G N + I+ K++ ++ DY FVE+M CP GC+NGGGQ
Sbjct: 469 EGIKEAVYNVAGMDV-KVAVASGLSNAKIIMDKIRAKEADYHFVEIMCCPGGCVNGGGQP 527
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHT 459
+ E +K + L + A + NP ++ +Y E+L +PGSEKA +HT
Sbjct: 528 QVHADVRNFEDVKAIRAKVLYDNDAAKTLRKSHENPSIKRVYSEYLGEPGSEKAHHILHT 587
Query: 460 EY 461
Y
Sbjct: 588 TY 589
>gi|313227872|emb|CBY23021.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 167/494 (33%), Positives = 262/494 (53%), Gaps = 75/494 (15%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQV-----------STSSKQQAEPVK 53
FS T+RIGDL DFI P C K + P + QV + SS ++ E K
Sbjct: 3 FSGTVRIGDLDDFIGPGLECT---KPVDIQKPKRGQVGRVKRNKDGSYADSSGKKLEKAK 59
Query: 54 ISLKDCLACSGCITSAETVMLEKQS-----LDEFLSNINKGKA-VIISLSPQSRASLAEH 107
I+L DCLACSGC+TSAETV++ QS LDEF S + K + V+++LSPQSR+SLA+
Sbjct: 60 ITLADCLACSGCVTSAETVLITAQSTVQLSLDEFYSVLQKKSSKVVVTLSPQSRSSLAQR 119
Query: 108 FGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
F + K L + L +L + S +RDLT F+ E +R++S
Sbjct: 120 FRHTG---SKNLYSPLGALPMLHKLGVSKTRDLT------PFLP------EQSGQRASSL 164
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT--IKHHICQKLGFRPDEIYH 225
L + K Y P +S++SP+ + IK ++C + +IYH
Sbjct: 165 LGL-----SRIRLLRRKNARRYACP--ASLESPKSSGKDEKWIKLNLCTE----NKDIYH 213
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
VTVMPC+DKKLEAAR++ FQ++S G + +VD VL T E+ L+ +
Sbjct: 214 VTVMPCFDKKLEAARQE--FQIESN-------GRIVKDVDCVLATTEIEKLLT------D 258
Query: 286 ALEESPLDKMLTNVDDEGH----LYG-VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 340
L + L+ + + E + +Y G SGGY + V++ A+++LFG+ L F
Sbjct: 259 NLGDDELESVAAAFEHEDNSSDFVYSHRGGGSGGYLDYVYQSASESLFGRKPSEELRFTR 318
Query: 341 IRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQFVEVMACPSGCLN 398
+RN+ DF E LE++G+ L+FA YGF+++QN+V ++K ++ + Y ++EVMACPSGCLN
Sbjct: 319 VRNNKDFLETTLEIDGEVKLRFAKAYGFRSIQNLVTRLKTKRGNAYDYIEVMACPSGCLN 378
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GG QI+ +E+ +++ T ++ + ++ PL ++ Q + K+ ++
Sbjct: 379 GGAQIR----YDDREMNESILTRMTDDYNALESYR-PLTCEKFESLFTQLKRDIDKQSLY 433
Query: 459 TEYHPVVKSITAQL 472
T + + K T L
Sbjct: 434 TSFRAIQKEETNAL 447
>gi|317499936|ref|ZP_07958172.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087841|ref|ZP_08336766.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438264|ref|ZP_08617904.1| hypothetical protein HMPREF0990_00298 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898653|gb|EFV20688.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409536|gb|EGG88977.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336014070|gb|EGN43933.1| hypothetical protein HMPREF0990_00298 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 580
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 222/422 (52%), Gaps = 40/422 (9%)
Query: 51 PVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
P ++ L D C+ C CI + T + EK ++D+ L+ I ++ K V++ +P RA+L E
Sbjct: 182 PFEMGLGDTSCVGCGQCIAACPTGALYEKSNIDDVLAAIADETKHVVVQPAPSVRAALGE 241
Query: 107 HFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
FG P+ V K+ L+ +G +FDT+ S DLT++E +EF+ R K +
Sbjct: 242 EFGY-PMGTDVEGKMAAALRRIGFDKVFDTNFSADLTIMEEAHEFLDRVK---------N 291
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
LP+++S PGW+ Y E L ++SS KSPQQ GA K + +K+ P++I
Sbjct: 292 KGVLPLMTSCSPGWVKYCEHYYPDQ-LDHLSSCKSPQQMFGAITKTYYAEKMNIAPEDIV 350
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
V+VMPC KK E RED +D G +P+VD +TT E+ LI+ +NF
Sbjct: 351 CVSVMPCTAKKFEIQRED------------QDAG-GVPDVDISITTRELARLIRKVGINF 397
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
+L + D L G ++G ++GG E R A + L G+ +E +EF +R +
Sbjct: 398 RSLPDEGFDDPLGESTGAGVIFG---ATGGVMEAALRTAVEELTGETLE-KVEFTEVRGT 453
Query: 345 D-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ +E V G + K A+ G N + I+ K++ ++ DY FVE+M CP GC+NGGGQ
Sbjct: 454 EGIKEAVYNVAGMDV-KVAVASGLSNAKIIMDKIRAKEADYHFVEIMCCPGGCVNGGGQP 512
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHT 459
+ E +K + L + A + NP ++ +Y E+L +PGSEKA +HT
Sbjct: 513 QVHADVRNFEDVKAIRAKVLYDNDAAKTLRKSHENPSIKRVYSEYLGEPGSEKAHHILHT 572
Query: 460 EY 461
Y
Sbjct: 573 TY 574
>gi|241155968|ref|XP_002407667.1| conserved hypothetical protein [Ixodes scapularis]
gi|215494173|gb|EEC03814.1| conserved hypothetical protein [Ixodes scapularis]
Length = 300
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 181/293 (61%), Gaps = 35/293 (11%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFK--------NPDKPQVSTSSK-QQA 49
M++ FS LRI DL+DFI PSQ C+ V ++K++ K + QV + K +
Sbjct: 1 MADGFSGVLRITDLNDFITPSQECIKPVKVEKSSSKLGSIKIAEDGSYLQVDETGKASKL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS--------NINKGKAVIISLSPQSR 101
+I+L DCLACSGCITSAETV++ +QS +E + + + +++S++PQ
Sbjct: 61 AKAQITLNDCLACSGCITSAETVLITQQSSEELFKVLRANSELPVEQRQLIVVSIAPQVY 120
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
AS + + ++ + +LT F K LG + DT+ +R+ TL+E ++F+ RY++ +ESD
Sbjct: 121 ASFSGKYDVAYDEAAARLTGFFKRLGAHHVLDTTFAREFTLVEMLHDFLERYRR-KESD- 178
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
S+LP+L+SACPG++CYAEK G +ILPYIS +SPQQ +G+ +K ++ K+ PD
Sbjct: 179 ---PSALPLLTSACPGFVCYAEKTHGDFILPYISRARSPQQVMGSLVKKYLASKISRTPD 235
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
+IYHV+VMPCYDKKLEA+R DF DE +VD V+T+ +L
Sbjct: 236 QIYHVSVMPCYDKKLEASRGDFY-----------DEIYSTRDVDCVITSSRLL 277
>gi|389633019|ref|XP_003714162.1| cytosolic Fe-S cluster assembly factor nar-1 [Magnaporthe oryzae
70-15]
gi|351646495|gb|EHA54355.1| cytosolic Fe-S cluster assembly factor nar-1 [Magnaporthe oryzae
70-15]
gi|440473671|gb|ELQ42453.1| hypothetical protein OOU_Y34scaffold00207g18 [Magnaporthe oryzae
Y34]
gi|440486283|gb|ELQ66164.1| hypothetical protein OOW_P131scaffold00420g3 [Magnaporthe oryzae
P131]
Length = 598
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 242/525 (46%), Gaps = 122/525 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP----------QVSTSSKQQAEPVKI 54
S L + DL+DFI+P C+ ++ P P Q + SS A P +I
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPVETLPAAAPTDPSLEHEVILDGQQNGSSSAAAGPAQI 60
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV---------------------- 92
SL DCLACSGC+TSAE V++ QS E LS ++ A+
Sbjct: 61 SLTDCLACSGCVTSAEAVLVSLQSHSELLSVLDSAPALQVVRDESTGQFSVEGLEDPARR 120
Query: 93 --IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLK-----SLGVKS------IFDTSCS 137
+ S+SPQ+RASLA G ++ Q + L L S G K + DT+ +
Sbjct: 121 LFVASVSPQTRASLAAASGPGVTERQAGRMLDRLLMGPEGLSAGGKWGNKFAWVVDTNAA 180
Query: 138 RDLTLIEACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYIS 195
R+ L+ +E + D S+++ P+L+S+CPGW+CYAEK Y+LP++S
Sbjct: 181 REACLVLGSDEVL----------DAASSTTPKKPILTSSCPGWVCYAEKTH-PYVLPHLS 229
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 255
VKSPQ +G +K + + LG D I+H+ +MPC+DKKLEA+RE+ DS
Sbjct: 230 RVKSPQALVGTLLKTTLSRTLGVPADRIWHLALMPCFDKKLEASREELT---DSVWAGDG 286
Query: 256 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY--------- 306
+ G +VD V+T+ EV L + + ++F L SP K D++ H +
Sbjct: 287 NPGRGTRDVDCVITSKEVFMLTESRGIDFFNLPMSPALKQEQFPDNKIHHFLFPPRQRHR 346
Query: 307 --GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG--KTLLKFA 362
AG+SGG + + + + LE RN D E A+ G + L K
Sbjct: 347 PSRAAGTSGGNLHFIL----QDVLARNPGSRLETTRGRNIDVVEYAVHAGGSNEVLFKAG 402
Query: 363 LCYGFQNLQNIVRKVKMRK----------------------------CDYQFVEVMACPS 394
YGF+N+QN+VRK+K K + +VEVMACP
Sbjct: 403 RYYGFRNIQNLVRKLKPAKPSRMPGGKPFGSARRVPTGRAGAAGAATVENTYVEVMACPG 462
Query: 395 GCLNGGGQIKP-------------KPG-QSPKELIKTLETIYLEN 425
GC NGGGQ+K KPG Q KEL++ ++ Y
Sbjct: 463 GCTNGGGQVKADDQIIVDRRGYTTKPGPQEQKELLRDVDEAYFSG 507
>gi|116181550|ref|XP_001220624.1| hypothetical protein CHGG_01403 [Chaetomium globosum CBS 148.51]
gi|121790764|sp|Q2HEF1.1|NAR1_CHAGB RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|88185700|gb|EAQ93168.1| hypothetical protein CHGG_01403 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 234/487 (48%), Gaps = 100/487 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV------------------VSLKKATFKNPDKPQVSTSSK 46
S L DL+DFI+P C+ SL+ + +P +SS
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPTQPGPEQSQQPQSLEFEVILDGQQPTTGSSSN 60
Query: 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-------------- 92
P +ISL DCLACSGC+TSAE V++ QS +E L+ ++ A+
Sbjct: 61 GTTPPAQISLTDCLACSGCVTSAEAVLVSLQSHNEVLTLLDAAPALRVIQDSDGKPVVSG 120
Query: 93 ---------IISLSPQSRASLAEHFG--ISPLQVFKKLTTFL-----------KSLGVKS 130
+ S+SPQ+RASLA G ++ Q + L G
Sbjct: 121 LENPEAKLFVASVSPQTRASLAAACGGAVTEQQAGWMIEQLLMGPAGLAGGGKHGNGFTW 180
Query: 131 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 190
+ DT+ +R+ L+ +E + S D+ ++ P+L+S+CPGW+CYAEK Y+
Sbjct: 181 VVDTNTAREACLMLGSDEVLG--GGSWGGSDKPTS---PILTSSCPGWVCYAEKTH-PYV 234
Query: 191 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 250
LP++S VKSPQ +G +K + + LG PD ++H+ VMPC+DKKLEA+RE+ D+
Sbjct: 235 LPHLSRVKSPQALMGTLLKTTLSRVLGIAPDRVWHLAVMPCFDKKLEASREELT---DTA 291
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDK-MLTNVDDEGHLYGV 308
+ G + +VD V+T+ E+L L K V+F L +S P+ + M + D L+
Sbjct: 292 WGSGGVPGRGVRDVDCVITSKEILMLAASKGVDFFGLAKSAPVKQPMFPDSDIHRFLFPA 351
Query: 309 --------AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLL 359
G+SGG + + + K ++ RN+D E A L G+T+
Sbjct: 352 QRRKQLRDGGTSGGNLHYIIQD----VLSKHAGSQIQMTRGRNADVVEFAVLSSSGETIF 407
Query: 360 KFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCL 397
K A YGF+N+QN+VRK+K K ++ +VEVMACP GC
Sbjct: 408 KAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSARRPAGKSATLEHSYVEVMACPGGCT 467
Query: 398 NGGGQIK 404
NGGGQIK
Sbjct: 468 NGGGQIK 474
>gi|339441155|ref|YP_004707160.1| hypothetical protein CXIVA_00910 [Clostridium sp. SY8519]
gi|338900556|dbj|BAK46058.1| hypothetical protein CXIVA_00910 [Clostridium sp. SY8519]
Length = 581
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 213/419 (50%), Gaps = 42/419 (10%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C CIT L E+ +D L I + K V+I +P RAS++E FG
Sbjct: 194 CVGCGQCITVCPVGALHERDDVDAVLEMIKDPDKYVVIQAAPSVRASISEAFGYPIGSGT 253
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K KL ++ +G +FDT S DLT++E NE I R + + +LPM +S C
Sbjct: 254 KGKLAAAMRKIGFDRVFDTVFSADLTIMEEANELIERIQ---------TGGTLPMFTSCC 304
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E +L ++SS KSPQQ GA +K + +K G D+I V+ MPC KK
Sbjct: 305 PGWINYIETYYDD-MLAHVSSCKSPQQMFGAMVKTFLSEKEGIPADKIVVVSTMPCTAKK 363
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RED +P+VD LT+ E+ +I+ ++F LE+ D
Sbjct: 364 RELGRED-------------QNAAGVPDVDFSLTSRELARMIERSGISFPGLEDEAFDAP 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVE 354
L G L+G ++GG E R A L G+ +G +EF +R + D +E +V
Sbjct: 411 LGIGTGAGTLFG---ATGGVMEAALRTANDWLNGEA-QGEIEFTEVRGTKDIKEATYKV- 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G L+ A+ G +N + ++ K++ + +Y FVE MACP GC+NGGGQ + K + +
Sbjct: 466 GDLTLRVAIVSGLKNAKALLEKMRAGEVEYDFVEFMACPGGCVNGGGQPQQK---ACVRM 522
Query: 415 IKTLE-----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
+K L T+Y ++ ML +NP + LYD +L +PGSEKA +HT Y K
Sbjct: 523 VKDLRAERAMTLYRLDKSDMLRKSHENPEIIELYDSYLGKPGSEKAHATLHTSYKSQAK 581
>gi|330924151|ref|XP_003300539.1| hypothetical protein PTT_11788 [Pyrenophora teres f. teres 0-1]
gi|311325313|gb|EFQ91365.1| hypothetical protein PTT_11788 [Pyrenophora teres f. teres 0-1]
Length = 628
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 159/506 (31%), Positives = 230/506 (45%), Gaps = 118/506 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVV---SLKKATFKNPDKPQVSTSSKQQAEPVK----ISLK 57
S L DL+DFI+P C+ +L +N + +V+T K A ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPVQQTENTNAYEVTTEEKAAASEPPPPASISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------------ 87
DCLACSGC+TSAE V++ QS E LS ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHTEVLSTLDTHPSLRAPWLAPNGDNGVVNGHTSNGAPNG 120
Query: 88 ------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKS 130
+GK + S+SPQ+RASLA F +S ++ ++ L + G
Sbjct: 121 VNGHYAEGKLFVASVSPQARASLAAVFDVSEVEAGNMISQLLSGPSGLRSGGQQKSGFTW 180
Query: 131 IFDTSCSRDLTLIEACNEFIAR-----YKQSQESDDE---RSNSSLPMLSSACPGWICYA 182
+ DT+ R+ L+ A +E K S + E + P+L+SACPGWICYA
Sbjct: 181 VIDTNAMREACLVAAADEVTKALAPEAVKASPKPGSEGAIDTTPKAPILTSACPGWICYA 240
Query: 183 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 242
EK Y+LP++S +KSPQ G IK + ++ P +I+H+ +MPC+DKKLEA+R +
Sbjct: 241 EKTH-PYVLPHLSRLKSPQALTGTLIKSVLSERYNVPPSQIWHLAIMPCFDKKLEASRGE 299
Query: 243 FVFQL-----DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL---------- 287
DS +E RD D V+T E+L L + +NF +L
Sbjct: 300 LTSAAWLPSHDSTQEKIRD-------TDCVITARELLHLAAARGINFASLPRASLPSADR 352
Query: 288 ---EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
+S LD L + +AG SGGY H +T K + RN+
Sbjct: 353 TPFPDSKLDAFLFPPSRRKNQSALAGPSGGY----LYHILQTYQAKNPGSSILVVRGRNA 408
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---------------------- 382
D E ++ + +T++K A YGF+N+QN+VR++K K
Sbjct: 409 DVVEYSVVRDSETIIKAARFYGFRNIQNLVRRLKPAKASRLPGGKTGVSRRPGGVGAAAG 468
Query: 383 ----DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQ+K
Sbjct: 469 EGVKDYAYVEVMACPGGCTNGGGQVK 494
>gi|344229878|gb|EGV61763.1| hypothetical protein CANTEDRAFT_109743 [Candida tenuis ATCC 10573]
Length = 532
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 162/498 (32%), Positives = 236/498 (47%), Gaps = 105/498 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK-NPDKPQVST---------------SSKQQ 48
S L DL+DFI P C+ K T K NP+ +V S
Sbjct: 1 MSAILSADDLNDFITPGAACI---KPPTQKENPNNGEVEVQIGMDGDPLEVSKIDGSTSN 57
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK---GKAVIISLSPQSRASLA 105
P +ISL DCLACSGCITSAE +++ + S E L +N+ + S+S QSRASLA
Sbjct: 58 LSPAQISLADCLACSGCITSAEEILVAQHSHQELLKALNQRDTNTHFVASVSHQSRASLA 117
Query: 106 EHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
G++ Q + L F+ +G +++ TS R L+LI I + + S
Sbjct: 118 TALGVTVEQADRLLINLFVNQMGFQAVVGTSLGRKLSLISESYNIIHK---------KES 168
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
N P+LSS CPGW+ YAEK YILP +S +KSPQQ G +K+ + ++LG IY
Sbjct: 169 NFEGPLLSSVCPGWVLYAEKT-HPYILPKMSDIKSPQQITGCLLKNIMAEQLGTDKSNIY 227
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
H+++MPC+DKKLE+AR + +E TY+D VD VLT E++ L+ F
Sbjct: 228 HLSIMPCFDKKLESARP----EKGEEESTYKD-------VDCVLTAKELVTLLDQHPDTF 276
Query: 285 EALEESPLDKMLTNVDDEGHLYGVA----------------GSSGGYAE---TVFRHAAK 325
+ + + D + + V + VA +SGGY+ T+ ++
Sbjct: 277 KLIPDDVNDVIHSRVSIQEIYKQVAPVNWPLVEYAWSNDSGSASGGYSHNYLTIMKNHLM 336
Query: 326 TLFGKVIEGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK----- 378
T +++E + KTI +N+D E+ L + + A+ GF+N+QN+VR+ K
Sbjct: 337 TKSPELVEDNFSIKTIYGKNTDIYELRLMYNDEKVASAAIVNGFRNIQNLVRRFKPSAPQ 396
Query: 379 --------------------------------MRKCDYQFVEVMACPSGCLNGGGQIK-P 405
KCDY VEVMACP+GC+NGGGQI P
Sbjct: 397 KATAKVNPLVARRRARMSKPSGEGSIQEELADASKCDY--VEVMACPNGCINGGGQISHP 454
Query: 406 KPGQSPKELIKTLETIYL 423
+ L+K +E L
Sbjct: 455 EDMLEKDWLLKAVENYQL 472
>gi|340521976|gb|EGR52209.1| predicted protein [Trichoderma reesei QM6a]
Length = 577
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 233/494 (47%), Gaps = 117/494 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK-------ATFKNPDKPQVSTSSKQQ------AEP 51
S L DL+DFI+P C+ ++ A + ++ +V +QQ A P
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPADAPPAPPSSANENEVILDGQQQPSTASAASP 60
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+ISL DCLACSGC+TSAE +++ QS E LS ++ A+
Sbjct: 61 AQISLTDCLACSGCVTSAEAILVSLQSHTEVLSTLDAAPALRVVGPDAAGNFAVEGLDND 120
Query: 93 -----IISLSPQSRASLAE--HFGISPLQVFKKLTTFLKSL-----------GVKSIFDT 134
+ S+S Q+RA+LA G+S Q L L+ + + D
Sbjct: 121 DAKLFVASVSAQTRANLAAACGRGVSESQAGYMLENLLRGPEGLAKAGKWNNAFEWVVDI 180
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +RD TL E ++ + S P+L+S+CPGW+CYAEK Y+LP++
Sbjct: 181 NVARDATLALGAAEVLSSPTPGV------AKPSQPILASSCPGWVCYAEKTH-PYVLPHL 233
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
S VKSPQ +G +K + +KLG P I+HV VMPC+DKKLEA+RE+ +E +
Sbjct: 234 SKVKSPQALMGTLLKTTLSKKLGVPPSRIWHVAVMPCFDKKLEASREELT------DEVW 287
Query: 255 RDEGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEES----------PLDKMLTNVDD 301
GL I +VD V+T+ EVL L + + ++F +S P +KM
Sbjct: 288 ARSGLPGKGIRDVDCVITSKEVLMLAESRGLDFFNFSKSASSVPPSIPFPDEKM------ 341
Query: 302 EGHLYG---------VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
G L+ VAGSSGG + H +T + ++ RN D E +
Sbjct: 342 HGFLFPNKGSRNPPRVAGSSGG----LLHHILQTKAAQTPGSEIQVVRGRNVDVVEYFVT 397
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVM 390
V G+ + K A YGF+N+QN+VR++K + DY FVEVM
Sbjct: 398 VNGEPVFKAARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPAGKAPSHDYSFVEVM 457
Query: 391 ACPSGCLNGGGQIK 404
ACP GC NGGGQIK
Sbjct: 458 ACPGGCTNGGGQIK 471
>gi|390471046|ref|XP_003734423.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor NARFL [Callithrix jacchus]
Length = 367
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 181/317 (57%), Gaps = 43/317 (13%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKK------ATFKNPDKP------QVSTSSK 46
M+ FS L++ DL+DFI PSQ C+ V++ K A + D QV
Sbjct: 1 MASPFSGALQLTDLNDFIGPSQECIKPVNVDKRLGSGVAKIRIEDDGSYFQVNQVRHRRP 60
Query: 47 QQAEPVKISLKDCLACSGCITSAETVML------EKQSLDEFLSNINKG--KAVIISLSP 98
+ + L CS C+TS+ + + KQ L L G + V++S+SP
Sbjct: 61 LHGLTARPTXNTFLCCSNCVTSSSSDLSLVKSQHRKQRLPLALQVAAPGQQRLVVVSVSP 120
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
QSRASLA F ++P +KLT+F K +GV +FDT+ SR+ +L+E+ EF+ R++
Sbjct: 121 QSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRNFSLLESQREFVRRFR---- 176
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+
Sbjct: 177 ------GQALPVLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQQHV 230
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
PD++YHVTVMPCYDKKLEA+R DF +Q RD VD VLTTGEVL L++
Sbjct: 231 TPDKVYHVTVMPCYDKKLEASRPDFF----NQAHQTRD-------VDCVLTTGEVLTLLE 279
Query: 279 LKAVNFEALEESPLDKM 295
+ V+ LE PLD +
Sbjct: 280 EEGVSLPDLEPVPLDSL 296
>gi|302389113|ref|YP_003824934.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
gi|302199741|gb|ADL07311.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
Length = 566
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 220/411 (53%), Gaps = 45/411 (10%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV 115
DC CS C T A V K +D+ +N K VI ++P R + E FG+ P +
Sbjct: 190 DCGQCSAVCPTGAIVV---KSHIDKVWDALNDDNKVVIAQIAPAVRVAFGEAFGLRPGES 246
Query: 116 FKKL-TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ L + LK++G +FDT + DLT+IE +EF+ R ++ + +LP+ +S
Sbjct: 247 TEYLIVSALKAMGFDMVFDTCFAADLTVIEEGHEFLERLEKGE---------NLPLFTSC 297
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E S+ L +SS +SP Q G+ K++ ++LG + +Y V++MPC K
Sbjct: 298 CPAWVKFVEFNYPSF-LNNLSSCRSPHQMFGSFTKNYYAKELGVSRENVYVVSIMPCTAK 356
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+ +D P+VD+VLTT E++ +++ + F+ L+E P D
Sbjct: 357 KAEAAREEL--GVDGN-----------PDVDAVLTTRELIRMVREAGIVFKDLKEEPFDM 403
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
G ++G ++GG AE V R TL G GH F+ +R S+ +E +
Sbjct: 404 PFGFSTGGGIIFG---ATGGVAEAVVR----TLDG----GHRRFEQVRGSEGLKEATIVK 452
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + + A+ +G +N + ++ K+K Y VEVMACP GC+ G GQ P +E
Sbjct: 453 DGKEI-RVAVVHGLKNARELLEKIKSGSVKYDMVEVMACPGGCVGGAGQPSPASTGVREE 511
Query: 414 LIKTLETIYLENVM-LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
K L I +N M LA +NP+++ LY++WL PGSE A K++HT Y P
Sbjct: 512 RAKGLYNI--DNRMQLARSDENPMIKMLYEKWLGSPGSEVAHKYLHTHYRP 560
>gi|212542391|ref|XP_002151350.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces marneffei ATCC 18224]
gi|259511271|sp|B6QQH9.1|NAR1_PENMQ RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|210066257|gb|EEA20350.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces marneffei ATCC 18224]
Length = 590
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 225/478 (47%), Gaps = 88/478 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +K T + +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGLACIKPVENFPQKNTASEENAYEVTTEDKIQPENQAPTQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-----------------------II 94
DCLACSGC+TSAE V++ QS E L+ ++ + +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHAEVLNTLDAHRPAPLIITQDGNLSVSRKIEPDERIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLTLI 143
S+SPQ RASLA + IS + + L+ G + DT+ R + L
Sbjct: 121 SVSPQVRASLAATYDISERKAGHMIDQLLRGPQGLRNGGKHGNGFTWVLDTNVLRQMVLT 180
Query: 144 EACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
A E S S +S P+LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 LAAQEVTEALHTSSASSGSGKYTSPKKPILSSACPGWICYAEKT-HPHVLPHLSRLKSPQ 239
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
G +K + + LG P +I+H+ VMPC+DKKLEA+RE+ D+ D +
Sbjct: 240 ALSGTFVKSILSRTLGIAPSQIWHLAVMPCFDKKLEASREELT---DAAWSNISDS--PV 294
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVDDEGHLYGV 308
+VD V+T+ E+L L + ++ +L + +D L +
Sbjct: 295 RDVDCVITSRELLMLASSRNISLPSLPLKSLAPTYAPHFPDPTVDSFLFSHTQTSKQSSK 354
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALCYGF 367
G+SGGY + + G I E + RNSD E +L E + ++K A YGF
Sbjct: 355 YGTSGGYLYYILLLHKEKHPGSRI----EVQRGRNSDVIEYSLMSETNEAIMKAARYYGF 410
Query: 368 QNLQNIVRKVKMRKC---------------------DYQFVEVMACPSGCLNGGGQIK 404
+N+QN+VRK+K + DY FVEVMACP GC NGGGQI+
Sbjct: 411 RNIQNLVRKMKPARASRLPGANRRGAAGSGASSSGLDYAFVEVMACPGGCTNGGGQIR 468
>gi|67526349|ref|XP_661236.1| hypothetical protein AN3632.2 [Aspergillus nidulans FGSC A4]
gi|40740650|gb|EAA59840.1| hypothetical protein AN3632.2 [Aspergillus nidulans FGSC A4]
Length = 636
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 233/493 (47%), Gaps = 113/493 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +K + +NP +V+T K Q E P +ISL
Sbjct: 47 MSAILSADDLNDFISPGVACIKPVESLPQKQSNENPY--EVTTEDKVQPENPPPAQISLT 104
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------KGKAVI 93
DCLACSGC+TSAE V++ QS +E L+ ++ +G+ +
Sbjct: 105 DCLACSGCVTSAEAVLISLQSHNEVLNTLDAQPEIRLVSGENGTVIEDSGRTRDEGRIFV 164
Query: 94 ISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTL 142
S+SPQ RASLA +G+S + + FL G + DT+ R+ L
Sbjct: 165 ASVSPQVRASLAATYGVSEKEANHIIHQFLSGPNGLRAGGKHGSGFSWVVDTNSLREAVL 224
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
+ +E ES S P+LSSACPGWICYAEK +ILP++S +KSPQ
Sbjct: 225 VLTADEV-------SESLTGSSAPKRPILSSACPGWICYAEKT-HPFILPHLSRLKSPQA 276
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV----FQLDSQEETYRDEG 258
G +K I +KLG I+H+++MPC+DKKLEA+RE+ +L S E
Sbjct: 277 LTGTFLKTVISKKLGVPASRIWHLSIMPCFDKKLEASREELTDAAWNRLSSGEPN----- 331
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT--------NV-----DDEGHL 305
+ +VD V+T+ E+L L + ++ L L + L NV
Sbjct: 332 TPVRDVDCVITSRELLSLASSRGISLPNLPRKSLPQSLRLPFPDPALNVFLFSEKSFSRQ 391
Query: 306 YGVAGSSGGYAETV-FRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFAL 363
+G+SGGY V A+ +++ + RN+D + L EG+ +LK A
Sbjct: 392 TSASGTSGGYLHNVLLSFQARNPGSEIVT-----QRGRNADVVDYTLMSPEGEPILKAAR 446
Query: 364 CYGFQNLQNIVRKVKMRKC--------------------------------DYQFVEVMA 391
YGF+N+QN+VRK+K + DY +VEVMA
Sbjct: 447 YYGFRNIQNLVRKLKPARVSRLPGAKVATGQTAGGRRQPISRNGASAGSSMDYAYVEVMA 506
Query: 392 CPSGCLNGGGQIK 404
CP GC NGGGQI+
Sbjct: 507 CPGGCTNGGGQIR 519
>gi|225572039|ref|ZP_03780903.1| hypothetical protein RUMHYD_00333 [Blautia hydrogenotrophica DSM
10507]
gi|225040474|gb|EEG50720.1| hydrogenase, Fe-only [Blautia hydrogenotrophica DSM 10507]
Length = 581
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 217/417 (52%), Gaps = 48/417 (11%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L EK D+ L+ I + K V++ +P RA+L E FG P+
Sbjct: 192 CVSCGQCIAVCPTGALQEKDYTDQVLAAIADPEKYVVVQTAPSVRAALGEEFGY-PIGTD 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G +FDT S DLT++E +EF+ R + + LP+++S
Sbjct: 251 VEGKMAAALRRMGFDKVFDTDFSADLTIMEEAHEFLNRVQ---------NGGVLPLITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E +L ++SS KSPQQ GA K + +K+G P++I V+VMPC K
Sbjct: 302 SPGWVKYCEHYFPD-LLDHLSSCKSPQQMFGAVTKTYFAEKMGLDPEKIVCVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D +P+VD +TT E+ LI+ +NF L E D
Sbjct: 361 KFEIGRPD-------------QSAAGVPDVDIAITTRELARLIKRCGINFVNLPEETFDD 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++G ++GG E R A +TL G+ + G L+F+ +R ++ +E + V
Sbjct: 408 PLGESTGAGVIFG---ATGGVMEAALRTAVETLTGETL-GSLDFEEVRGTEGIKEASYLV 463
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + K A+ G N + I+ K++ + DY F+E+MACP GC+NGGGQ Q P E
Sbjct: 464 NGLEV-KVAVASGLANAREILEKIRRGEADYHFIEIMACPGGCVNGGGQ-----PQVPAE 517
Query: 414 L-----IKTL--ETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ I+ L + +Y + L +NP ++ LY E+L +PGS KA K +HT Y
Sbjct: 518 VRNFQDIRALRAKVLYQNDTQKALRKSHENPSIQKLYAEYLGEPGSHKAHKILHTSY 574
>gi|259511479|sp|Q5B748.2|NAR1_EMENI RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|259481839|tpe|CBF75735.1| TPA: iron-sulfur cluster assembly associated protein Nar1, putative
(AFU_orthologue; AFUA_4G11960) [Aspergillus nidulans
FGSC A4]
Length = 590
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 233/493 (47%), Gaps = 113/493 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +K + +NP +V+T K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVESLPQKQSNENPY--EVTTEDKVQPENPPPAQISLT 58
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------KGKAVI 93
DCLACSGC+TSAE V++ QS +E L+ ++ +G+ +
Sbjct: 59 DCLACSGCVTSAEAVLISLQSHNEVLNTLDAQPEIRLVSGENGTVIEDSGRTRDEGRIFV 118
Query: 94 ISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTL 142
S+SPQ RASLA +G+S + + FL G + DT+ R+ L
Sbjct: 119 ASVSPQVRASLAATYGVSEKEANHIIHQFLSGPNGLRAGGKHGSGFSWVVDTNSLREAVL 178
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
+ +E ES S P+LSSACPGWICYAEK +ILP++S +KSPQ
Sbjct: 179 VLTADEV-------SESLTGSSAPKRPILSSACPGWICYAEKT-HPFILPHLSRLKSPQA 230
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV----FQLDSQEETYRDEG 258
G +K I +KLG I+H+++MPC+DKKLEA+RE+ +L S E
Sbjct: 231 LTGTFLKTVISKKLGVPASRIWHLSIMPCFDKKLEASREELTDAAWNRLSSGEPN----- 285
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT--------NV-----DDEGHL 305
+ +VD V+T+ E+L L + ++ L L + L NV
Sbjct: 286 TPVRDVDCVITSRELLSLASSRGISLPNLPRKSLPQSLRLPFPDPALNVFLFSEKSFSRQ 345
Query: 306 YGVAGSSGGYAETV-FRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFAL 363
+G+SGGY V A+ +++ + RN+D + L EG+ +LK A
Sbjct: 346 TSASGTSGGYLHNVLLSFQARNPGSEIVT-----QRGRNADVVDYTLMSPEGEPILKAAR 400
Query: 364 CYGFQNLQNIVRKVKMRKC--------------------------------DYQFVEVMA 391
YGF+N+QN+VRK+K + DY +VEVMA
Sbjct: 401 YYGFRNIQNLVRKLKPARVSRLPGAKVATGQTAGGRRQPISRNGASAGSSMDYAYVEVMA 460
Query: 392 CPSGCLNGGGQIK 404
CP GC NGGGQI+
Sbjct: 461 CPGGCTNGGGQIR 473
>gi|367019132|ref|XP_003658851.1| hypothetical protein MYCTH_2295162 [Myceliophthora thermophila ATCC
42464]
gi|347006118|gb|AEO53606.1| hypothetical protein MYCTH_2295162 [Myceliophthora thermophila ATCC
42464]
Length = 590
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 228/490 (46%), Gaps = 102/490 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---------------DKPQVSTSSKQQA 49
S L DL+DFI+P C+ ++ + P D Q S +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAQPPSSSEQPQSLEFEVILDGQQPSATGASTN 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV----------------- 92
P +ISL DCLACSGC+TSAE V++ QS +E LS ++ A+
Sbjct: 61 APAQISLTDCLACSGCVTSAEAVLVSLQSHNEVLSMLDSAPALRITRDSDGGSYGAGKFK 120
Query: 93 ------------IISLSPQSRASLAE--HFGISPLQVFKKLTTFL-----------KSLG 127
+ S+SPQ+RA+LA G++ Q + L G
Sbjct: 121 VSGLEDPAAKLFVASVSPQTRANLAAACGGGVTARQAGWMIEQLLMGPAGLAAGGKHGNG 180
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
+ DT+ +R+ L+ +E + R ++ Q S D + + P+L+S+CPGW+CYAEK
Sbjct: 181 FTWVVDTNTAREACLVLGSDEVLGR-REGQGSSD---SPTPPVLTSSCPGWVCYAEKTH- 235
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
Y+LP++S VKSPQ +G +K + + LG PD I+H+ VMPC+DKKLEA+RE+
Sbjct: 236 PYVLPHLSRVKSPQALMGTMLKTALSRLLGIPPDRIWHLAVMPCFDKKLEASREELT--- 292
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES--------PLDKMLTNV 299
D+ G + +VD V+T+ EVL L + V+F L +S P + +
Sbjct: 293 DAVWAGSGKPGKGVRDVDCVITSKEVLMLAASRGVDFFGLPKSAPVQQPEFPDPTIQRFL 352
Query: 300 DDEGHLYGVA--GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGK 356
H V G+SGG + G I + RN+D F ++ G+
Sbjct: 353 FPAQHRKQVREEGTSGGNLHYILHDVQSRHPGSRI----QMARGRNADVFEYSVVKPSGE 408
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPS 394
K A YGF+N+QN+VRK+K K DY +VEVMACP
Sbjct: 409 AAFKAARYYGFRNIQNLVRKLKPAKPSRMPGGKPVGSARRPGSKSAGLDYAYVEVMACPG 468
Query: 395 GCLNGGGQIK 404
GC NGGGQIK
Sbjct: 469 GCTNGGGQIK 478
>gi|302659012|ref|XP_003021201.1| hypothetical protein TRV_04632 [Trichophyton verrucosum HKI 0517]
gi|291185089|gb|EFE40583.1| hypothetical protein TRV_04632 [Trichophyton verrucosum HKI 0517]
Length = 597
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 233/490 (47%), Gaps = 103/490 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSK---QQAEPVKISLKDCL 60
S L DL+DFI+P C+ ++ K + P +V+T K Q P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKKQEENPYEVTTEDKLEEQNPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----------------GKAVIISLSPQSRASL 104
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASL
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDANPEIRLDGGGRIEAGDGKIFVASVSPQVRASL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTL-------IEAC 146
A +GIS + FL G + DT+ R L E+
Sbjct: 121 AATYGISETNAGYMIEQFLSGPNGLRAGGQHGSGFSWVVDTNIMRQAVLELSTAEVTESL 180
Query: 147 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
N+ A S + D+ S + P+L+S+CPGWICYAEK ++LP++S +KSPQ G
Sbjct: 181 ND--AAPTTSHDESDKFSLPNRPILASSCPGWICYAEKTH-PHVLPHLSRLKSPQALTGT 237
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-----I 261
+K I +KL P +++H+ +MPC+DKKLEA+R++ + ++R E L+ +
Sbjct: 238 FLKTIISKKLNISPSQVWHLAIMPCFDKKLEASRQELT------DVSWRGEALDTASSPV 291
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEA-------------LEESPLDKML-TNVDDEGHLYG 307
+VD V+T+ E+L L + ++ + + + K L TN
Sbjct: 292 RDVDCVITSKELLMLASSRNISLPSLPLEPLPTHLSTPFPDQTIAKFLSTNNTLHSTQPA 351
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYG 366
AG SGGY H T K + ++ + RN+D E L G+ ++K A YG
Sbjct: 352 AAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSATGEPIIKAARYYG 407
Query: 367 FQNLQNIVRKVKMRKC--------------------------------DYQFVEVMACPS 394
F+N+QN+VRK+K + ++ +VEVMACP
Sbjct: 408 FRNIQNLVRKLKPARASRLPGSRVNGSGTRARPAPVSNGKPGAPIPPTEFAYVEVMACPG 467
Query: 395 GCLNGGGQIK 404
GC NGGGQI+
Sbjct: 468 GCTNGGGQIR 477
>gi|451992264|gb|EMD84772.1| hypothetical protein COCHEDRAFT_1199291 [Cochliobolus
heterostrophus C5]
gi|451999226|gb|EMD91689.1| hypothetical protein COCHEDRAFT_1175901 [Cochliobolus
heterostrophus C5]
Length = 621
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/507 (31%), Positives = 232/507 (45%), Gaps = 119/507 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP---QVSTSSKQQAEPVK----ISLK 57
S L DL+DFI+P C+ ++ + + +V+T K A ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPVQQEETSNAYEVTTEEKAAASQPPPPASISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L+ ++K
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHTEVLTTLDKYRSLRAPWQVQNGMNGVANGYGHNGTSSA 120
Query: 89 ---------GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL------KSLGVKS--- 130
GK + S+SPQ+RASLA F IS ++ ++ L ++ G K
Sbjct: 121 VNGNQTEAEGKLFVASVSPQTRASLAAVFNISEVEAGNMISQLLSGPNGLRTGGDKGSDF 180
Query: 131 --IFDTSCSRDLTLIEACNEFI-----ARYKQSQESDDERSNSSLP---MLSSACPGWIC 180
+ DT+ R+ L+ A +E A K S + E + ++P +L+SACPGWIC
Sbjct: 181 TWVLDTNAMREACLVAAADEVTNALSPAAAKASPQPGSEGAIDTIPKAPILTSACPGWIC 240
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK Y+LP++S +KSPQ G IK + ++ P +I+H+ +MPC+DKKLEA+R
Sbjct: 241 YAEKTH-PYVLPHLSRLKSPQALTGTLIKSVLSERYHVHPSQIWHLAIMPCFDKKLEASR 299
Query: 241 ED-----FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP---- 291
+ ++ + EE RD D V+T E+L L + +NF L SP
Sbjct: 300 GELTSAAWLPSYNQSEEKIRD-------TDCVITARELLHLAAARGINFVNLPRSPLSQS 352
Query: 292 ---------LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
LD L + AG SGGY H +T + + R
Sbjct: 353 DRIPFPDPKLDAFLFPSSRRKNQSVAAGPSGGY----LYHILQTYQARNPGSSISVVRGR 408
Query: 343 NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-------------------- 382
N+D E ++ +T++K A YGF+N+QN+VR++K +
Sbjct: 409 NADVVEYSVVQGSETIIKAARFYGFRNIQNLVRRLKPARASRLPGGKTGVSRKPGGTGAA 468
Query: 383 -----DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQ+K
Sbjct: 469 GEGVKDYAYVEVMACPGGCTNGGGQVK 495
>gi|302502469|ref|XP_003013225.1| hypothetical protein ARB_00410 [Arthroderma benhamiae CBS 112371]
gi|291176788|gb|EFE32585.1| hypothetical protein ARB_00410 [Arthroderma benhamiae CBS 112371]
Length = 597
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 235/488 (48%), Gaps = 99/488 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSK---QQAEPVKISLKDCL 60
S L DL+DFI+P C+ ++ K + P +V+T K Q P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKKQEENPYEVTTEDKLEEQNPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----------------GKAVIISLSPQSRASL 104
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASL
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDANPEIRLDGGGRTEDRDGKIFVASVSPQVRASL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACNEFIARY 153
A +GIS + FL G + DT+ R L + +E
Sbjct: 121 AATYGISEKNAGYMIEQFLSGPNGLRAGGQHGSGFTWVVDTNIMRQAVLELSTDEVTESL 180
Query: 154 KQSQ--ESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
+ S DE SLP +L+S+CPGWICYAEK ++LP++S +KSPQ +G +
Sbjct: 181 NDAAPTTSHDESGKFSLPNRPILASSCPGWICYAEKTH-PHVLPHLSRLKSPQALMGTFL 239
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-----IPE 263
K I +KL P +++H+ +MPC+DKKLEA+R++ + ++R E L+ + +
Sbjct: 240 KTIISKKLNISPSQVWHLAIMPCFDKKLEASRQELT------DVSWRGEALDKASSPVRD 293
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN----------VDDEGHLY----GVA 309
VD V+T+ E+L L + ++ +L PL L+ + + L+ A
Sbjct: 294 VDCVITSKELLMLASSRNISLPSLPLEPLPTHLSTPFPDQTIAQFLSNNNTLHSTQPAAA 353
Query: 310 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQ 368
G SGGY H T K + ++ + RN+D E L G+ ++K A YGF+
Sbjct: 354 GPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSATGEPIIKAARYYGFR 409
Query: 369 NLQNIVRKVKMRKC--------------------------------DYQFVEVMACPSGC 396
N+QN+VRK+K + ++ +VEVMACP GC
Sbjct: 410 NIQNLVRKLKPARASRLPGSRVNGSGARARPAPVSNGKPGAPIPPTEFAYVEVMACPGGC 469
Query: 397 LNGGGQIK 404
NGGGQI+
Sbjct: 470 TNGGGQIR 477
>gi|189189516|ref|XP_001931097.1| LET1-like protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972703|gb|EDU40202.1| LET1-like protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 629
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/506 (30%), Positives = 227/506 (44%), Gaps = 118/506 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK---NPDKPQVSTSSKQQAEPVK----ISLK 57
S L DL+DFI+P C+ ++ + N + +V+T K A ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETIPVQQTENANAYEVTTEEKAAASEPPPPASISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------------ 87
DCLACSGC+TSAE V++ QS E LS ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHTEVLSTLDTHPSLRAPWLAPSGNNGVVNGNTTNGATNG 120
Query: 88 ------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS---------- 130
+GK + S+SPQ+RASLA F +S + ++ L G++
Sbjct: 121 VKGSHAEGKLFVASVSPQARASLAAVFNVSEAEAGNMISQLLSGPSGLRDGGQQGSDFIW 180
Query: 131 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS--------LPMLSSACPGWICYA 182
+ DT+ R+ L+ A +E + S P+L+SACPGWICYA
Sbjct: 181 VIDTNAMREACLVAAADEVTKALALEAAKASPKPGSEGAIDITPKAPILTSACPGWICYA 240
Query: 183 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 242
EK Y+LP++S +KSPQ G IK + ++ P +I+H+ +MPC+DKKLEA+R +
Sbjct: 241 EKTH-PYVLPHLSRLKSPQALTGTLIKSVLSERYNVPPSQIWHLAIMPCFDKKLEASRGE 299
Query: 243 FVFQL-----DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL---------- 287
DS +E RD D V+T E+L L + +NF +L
Sbjct: 300 LTSAAWLPSHDSTQEKIRD-------TDCVITARELLHLAAARGINFASLPRTSLPSADR 352
Query: 288 ---EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
+S LD L + +AG SGGY H +T + + RN+
Sbjct: 353 TPFPDSKLDAFLFPPSRRKNQSALAGPSGGY----LYHILQTYQAQNPGSTISVARGRNA 408
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---------------------- 382
D E ++ + +T++K A YGF+N+QN+VR++K K
Sbjct: 409 DVVEYSVVRDSETIIKAARFYGFRNIQNLVRRLKPAKASRLPGGKTGVSRRPGGAGAAIG 468
Query: 383 ----DYQFVEVMACPSGCLNGGGQIK 404
+Y +VEVMACP GC NGGGQ+K
Sbjct: 469 EGVKNYAYVEVMACPGGCTNGGGQVK 494
>gi|302923118|ref|XP_003053608.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734549|gb|EEU47895.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 577
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 236/481 (49%), Gaps = 96/481 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQ-----VSTSSKQQAE----PVKIS 55
S L DL+DFI+P C+ ++ P + Q V +Q A P +IS
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPAAPPPQSQSLETEVILDGQQPAANPNAPAQIS 60
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV----------------------- 92
L DCLACSGC+TSAE V++ QS E L+ ++ A+
Sbjct: 61 LTDCLACSGCVTSAEAVLVSLQSHAEVLTTLDAAPALRVVTDDSGRFRVEGLENENAKLF 120
Query: 93 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRD 139
+ S+SPQ+RA+LA G +S V L+ L+ G + DT+ +R+
Sbjct: 121 VASVSPQTRANLAAACGGSVSEKDVGHMLSNLLRGPDGIANGGQWKNGFTWVVDTNVARE 180
Query: 140 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 199
TL+ E + + + + P+L+S+CPGW+CYAEK ++LP++S VKS
Sbjct: 181 ATLVLGAEEVL------NSTGAGVAAPAKPILASSCPGWVCYAEKTH-PHVLPHLSKVKS 233
Query: 200 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 259
PQ +G +K + + L P I+H+ VMPC+DKKLEA+RE+ ++ + E+ G
Sbjct: 234 PQALMGTILKTTLSRTLDIAPSRIWHLAVMPCFDKKLEASREELTEEVWAGGES---RGR 290
Query: 260 EIPEVDSVLTTGEVLDLIQLKAVN-FEALEESPLDKMLTNVDD---EGHLYGV------- 308
+ +VD V+T+ E+L L + + +N F+ + +P LT D L+
Sbjct: 291 GVRDVDCVITSKEILMLAESRGLNFFDIPKTAPPSPTLTPFPDPKIHDFLFPRRRSRNSP 350
Query: 309 --AGSSGGYAETVFR-HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 365
AG+SGG + + AA+T +++ RN D E ++ V G+ + + A Y
Sbjct: 351 REAGTSGGLLHHILQSRAAQTPGAEIVHARG-----RNVDVAEYSVVVNGEPVFRAARYY 405
Query: 366 GFQNLQNIVRKVK---------------MRK-------CDYQFVEVMACPSGCLNGGGQI 403
GF+N+QN+VR++K RK ++ +VEVMACP GC NGGGQI
Sbjct: 406 GFRNIQNLVRRLKPARPSRMPGGKPFGSARKPAGKAASLEHSYVEVMACPGGCTNGGGQI 465
Query: 404 K 404
K
Sbjct: 466 K 466
>gi|121708183|ref|XP_001272053.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus clavatus NRRL 1]
gi|259511263|sp|A1CIC2.1|NAR1_ASPCL RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|119400201|gb|EAW10627.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus clavatus NRRL 1]
Length = 597
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 231/490 (47%), Gaps = 104/490 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-----VSLKKATFKNPDKPQVSTSSKQQAE---PVKISL 56
S L DL+DFI+P C+ + K++ +NP +V+ K Q E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPQKESQSENPY--EVTKEDKIQPENLPPAQISL 58
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------KGKAV 92
DCLACSGC+TSAE V++ QS E L+ ++ + +
Sbjct: 59 TDCLACSGCVTSAEAVLISLQSHAEVLNTLDAYPEFRLSNESGQDDIKTTETADSESRVF 118
Query: 93 IISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKS----------IFDTSCSRDLT 141
+ S+SPQ RASLA +GIS + + FL S G+++ + DT+ R+
Sbjct: 119 VASVSPQVRASLATTYGISEREAQCMIDQFLSGSQGLRAGGKFHNGFAWVVDTNTMREAV 178
Query: 142 LIEACNEFIARYKQSQESDDERSN-SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 200
L +E S S D + P+LSSACPGWICYAEK +ILP++S +KSP
Sbjct: 179 LALTADEV----ANSLTSIDPLNTLPKRPILSSACPGWICYAEKT-HPFILPHLSRLKSP 233
Query: 201 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 260
Q G +K + + LG P I+H+ +MPC+DKKLEA+RE+ + T +
Sbjct: 234 QALTGTLLKSVLSKALGISPTRIWHLAIMPCFDKKLEASREELTDS--AWGPTPSEPHTP 291
Query: 261 IPEVDSVLTTGEVLDLIQLKAVN-------------FEALEESPLDKMLTNVDDEGHLYG 307
+ +VD V+T+ E+L L + ++ + + LD L + G
Sbjct: 292 VRDVDCVITSRELLTLAASRGISLPRLPLKPLPRSYYSPFPDRSLDSFLFSKRSSGQT-A 350
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYG 366
+G+SGGY H T K + + RN+D E V + G+ LLK A YG
Sbjct: 351 ASGTSGGY----LHHVLTTFQAKNPGSQIVTQRGRNADVVEYVLMSPGGEPLLKAARYYG 406
Query: 367 FQNLQNIVRKVKMRKC--------------------------------DYQFVEVMACPS 394
F+N+QN+VRK+K + DY +VEVMACP
Sbjct: 407 FRNIQNLVRKLKPARASRLPGARQSATSAGGSRRQLASRNAASAGSGTDYAYVEVMACPG 466
Query: 395 GCLNGGGQIK 404
GC NGGGQ++
Sbjct: 467 GCTNGGGQVR 476
>gi|396462406|ref|XP_003835814.1| similar to iron-sulfur cluster assembly associated protein Nar1
[Leptosphaeria maculans JN3]
gi|312212366|emb|CBX92449.1| similar to iron-sulfur cluster assembly associated protein Nar1
[Leptosphaeria maculans JN3]
Length = 632
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 225/497 (45%), Gaps = 104/497 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP---QVSTSSKQQAEPV----KISLK 57
S L DL+DFI+P C+ ++ + D +V+T K A ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPVQAEDSSNPYEVTTEEKAAAAQPPPPASISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------------- 92
DCLACSGC+TSAE V++ QS E L+ ++ +++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHSEVLTTLDTYRSLRAPWMTHNGTNGTNGTHGMTNGHGV 120
Query: 93 -----IISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSC 136
+ S+SPQ+RASLA F I+ + +T L G++S + DT+
Sbjct: 121 EEKLFVASVSPQARASLAAVFNITEAEAGNLITQLLSGPSGLRSGGHQRSDFTWVIDTNS 180
Query: 137 SRDLTLIEACNEFIARYKQSQESDDERSNS--------SLPMLSSACPGWICYAEKQLGS 188
R+ L+ A +E + R S P+L+SACPGWICYAEK
Sbjct: 181 VREACLVAAADEVAHALSPEALNAPTRPGSEGAIDTTPKQPILTSACPGWICYAEKTH-P 239
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 248
Y+LP++S +KSPQ G +K + Q+ P +I+H+ +MPC+DKKLEA+R +
Sbjct: 240 YLLPHLSRLKSPQALTGTLLKSVLSQRYNVAPSQIWHLAIMPCFDKKLEASRSELTSA-- 297
Query: 249 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-------------DKM 295
S Y ++ +VD V+T EVL L + +N +L ++PL D
Sbjct: 298 SWLPGYEASQDKVRDVDCVITAREVLHLAAARGINLASLPKTPLAPADRTPFPDPKLDTF 357
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
L + AGSSGGY H +T + L RN+D E A+
Sbjct: 358 LFPPSHRKNQPAAAGSSGGY----LYHILQTYQARHPGSTLTISRGRNADVVEYAVMQGP 413
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCD----------------------------YQFV 387
+ L++ A YGF+N+QN+VRK+K + Y +V
Sbjct: 414 QILIRAARFYGFRNIQNLVRKLKPARASRLPGARTGVVRRPPGAAAAASAREDVGQYAYV 473
Query: 388 EVMACPSGCLNGGGQIK 404
EVMACP GC NGGGQIK
Sbjct: 474 EVMACPGGCTNGGGQIK 490
>gi|401886802|gb|EJT50820.1| hypothetical protein A1Q1_08033 [Trichosporon asahii var. asahii
CBS 2479]
Length = 614
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 206/358 (57%), Gaps = 47/358 (13%)
Query: 40 QVST---SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--KAVII 94
+VST +S+QQ +I+L DCLACSGCITS E++++ QS E L+ I + ++
Sbjct: 51 EVSTDVAASRQQLAKAEINLNDCLACSGCITSTESLLITMQSHAEVLTFIKDKDPRRPVL 110
Query: 95 SLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS--LGVKSIFDTSCSRDLTLIEACNEFI 150
S++PQ+ ASL+ +G I L + +++ +FL S G ++ DT+ +R L L ++ +EF
Sbjct: 111 SIAPQTLASLSAAYGGSIPLLTLLRRIRSFLSSEERGGWTVLDTTFARHLALRQSVSEFR 170
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
+R ++S+ +LPML+SACPGW+CYAEK G +LP +SS +SPQ GA +K
Sbjct: 171 SR---------QQSSKNLPMLASACPGWVCYAEKAQGD-LLPLLSSTRSPQAMQGAIVKR 220
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
H+ +K G + +E+YHVT MPCYDKKLEA+R DF D+ + E D VLTT
Sbjct: 221 HLAEKWGKKANEVYHVTAMPCYDKKLEASRSDFY-----------DDVAKTKETDCVLTT 269
Query: 271 GEVLDLIQLKAVNFEAL-----EESPLDKMLTNVD--DEGH---LYGVAGSSGGYAETVF 320
GE LDL+ L + F+ E+ P+ + D G L SSG Y +
Sbjct: 270 GE-LDLL-LSELGFDPSAPVPGEDDPVPPASGDYSRPDAGFPELLTHPGSSSGSYLMALL 327
Query: 321 RHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 377
A+ + + L + +RNS D E LE G+ L K A CYGF+NLQN+VRKV
Sbjct: 328 VSLAQ----EHPDATLHVRRLRNSPDNEEYFLESGGQVLFKGARCYGFRNLQNLVRKV 381
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 22/26 (84%), Gaps = 2/26 (7%)
Query: 380 RKCDYQFVEVMACPSGCLNGGGQIKP 405
RK D FVEVMACP GC+NGGGQ+KP
Sbjct: 444 RKLD--FVEVMACPGGCVNGGGQMKP 467
>gi|448106612|ref|XP_004200790.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
gi|448109697|ref|XP_004201421.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
gi|359382212|emb|CCE81049.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
gi|359382977|emb|CCE80284.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
Length = 537
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 171/530 (32%), Positives = 245/530 (46%), Gaps = 115/530 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKAT-FKNPDKPQVSTSSKQQAEPV----------- 52
S L DL+DFI+P C+ ++ + K+ + +V Q EP+
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVQNVSGSKDGQQDEVEIQIDQDGEPLEVSKADGEASK 60
Query: 53 ----KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG------KAVIISLSPQSRA 102
+ISL DCLACSGCITSAE V++ + S +E + + K + S+S QSRA
Sbjct: 61 LNPAQISLSDCLACSGCITSAEEVLVAQHSHNELTRALEENRTQQTKKVFVASVSHQSRA 120
Query: 103 SLAEHFGISPLQVFKKLTT--FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
SLA +G+S + V KL F+ +G + TS R L+LI I R +
Sbjct: 121 SLAGAYGVS-VAVMDKLLIDLFVAQMGFTHVVGTSLGRSLSLIYEAQNIIDRKTR----- 174
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
S P LSS CPGW+ YAEK Y++P++S VKSPQQ G +K + ++LG
Sbjct: 175 ----GVSGPTLSSVCPGWVLYAEKT-HPYVIPHMSDVKSPQQITGCLLKSLVARELGISR 229
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
D IYHV++MPC+DKKLE+AR E Y E L P+VD VLT E++ LI+ +
Sbjct: 230 DNIYHVSIMPCFDKKLESARP----------EKYDGE-LPSPDVDCVLTPKELVTLIE-E 277
Query: 281 AVNFEAL-------EESPLDKMLTNVDDE-----------GHLYGVAGSSGGYAETVFRH 322
N +L + P ++N+ + SSGGYA
Sbjct: 278 NTNIYSLIPPHTDITKLPQPASMSNIYKQVAPKTWPSIELAWASNEGSSSGGYAYHYLAA 337
Query: 323 AAKTLFGK--VIEGHLEFKTI----RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRK 376
L + EF+ + RNSD E+ L + + A+ GF+N+QN+VR+
Sbjct: 338 LQLHLMASDPSVYNPQEFELVTVGGRNSDVYEMRLLFRKEKVGSAAVVNGFKNIQNLVRR 397
Query: 377 VK-----------------------------------MRKCDYQFVEVMACPSGCLNGGG 401
+K KCDY VE+MACP+GC+NGGG
Sbjct: 398 LKPSKSTVSSNPLANRRRARLAKANKSDDSSDTDQADPSKCDY--VEIMACPNGCINGGG 455
Query: 402 QIKPKPGQSPKELIKTLETIY--LENVMLADPFKNPLVRSLYD--EWLEQ 447
QI P S KE + ++ Y +E + L F +P R++ D W Q
Sbjct: 456 QISPPGDVSAKEWLASIIDRYRSIETISL---FDSPDARAVSDIIHWSSQ 502
>gi|321262240|ref|XP_003195839.1| iron hydrogenase [Cryptococcus gattii WM276]
gi|317462313|gb|ADV24052.1| iron hydrogenase, putative [Cryptococcus gattii WM276]
Length = 650
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 160/436 (36%), Positives = 228/436 (52%), Gaps = 93/436 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL---KKAT----------FKNPDKPQVST-------- 43
FS L I DL DF+ PSQ C++ + KK T N + +VST
Sbjct: 3 FSGALTITDLDDFLTPSQACIIPVRNNKKPTEDEGPTEIHIDSNNNYYEVSTYPSVGHDD 62
Query: 44 ---SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-------------N 87
+SK+ E +I+L DCLACSGCITS E++++ QS +E L I +
Sbjct: 63 GIGNSKKALEKAEINLNDCLACSGCITSTESLLITMQSQNEVLQFIKTNPTALDPDSPCH 122
Query: 88 KGKAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFLKS--LGVKSIFDTSCSR 138
K + I+S+SPQ+ ASL+ + IS L + +++ FL G ++DT+ +R
Sbjct: 123 KPRLSILSISPQTLASLSAAYATASSRSPISLLVLLRRIRAFLSQPEKGAWRVWDTTFAR 182
Query: 139 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 198
++L E+ EF R +ES ++ +PML+SACPGW+CYAEK G +LP +S+ +
Sbjct: 183 HMSLRESMVEFHER----KESKEKGKAVEMPMLASACPGWVCYAEKAQGD-MLPLLSAAR 237
Query: 199 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 258
S Q +GA K +L ++PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 238 SSQGIVGALAKSWYGHQLQYKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR------- 290
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVNFE--------------ALEESPLDKMLTNVDDEGH 304
+VD VLTTGE LDL+ LK + F+ A E+SP ++LT+ EG
Sbjct: 291 ----DVDCVLTTGE-LDLL-LKELGFDPYVPVANESTPSCSATEDSPFPELLTH---EG- 340
Query: 305 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKTLLKF 361
SSG Y +T+ ++ + + IR S D E ++ V G+ + K
Sbjct: 341 -----SSSGSYLQTIIYDVQRSHPNPT---RITTREIRGSTDNVEYLIQDTVTGQVIFKG 392
Query: 362 ALCYGFQNLQNIVRKV 377
A YGF+NLQN+VRKV
Sbjct: 393 AKVYGFRNLQNLVRKV 408
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 380 RKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 422
RK D FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 470 RKLD--FVEVMACPGGCVNGGGQMKPTVPTPSAPEAMEVDEEGY 511
>gi|345311184|ref|XP_001519777.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like,
partial [Ornithorhynchus anatinus]
Length = 382
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 211/409 (51%), Gaps = 57/409 (13%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 149
K V++S+SPQSRASL F ++PL+ +KLT F +SLGV +FDT+ SR+ +L+E+ EF
Sbjct: 8 KLVVVSISPQSRASLGARFELTPLETARKLTAFFQSLGVHHVFDTTFSRNFSLLESQREF 67
Query: 150 IARYKQSQESDDERSNSSLPMLSSACPG---------------WICYAEKQLGSYILPYI 194
+AR+++ S+ +LPML+SACPG +C ++LG+ +
Sbjct: 68 VARFRRHSASE-----PALPMLASACPGGDEGPGRAELRRNPSGLC--AERLGTGVE-SE 119
Query: 195 SSVKSPQQTIGATIKHHICQKLGF------RPDEIYH--VTVMPCYDKKLEAAREDFVFQ 246
S + P + GF P IY V + P + + VF
Sbjct: 120 SVSRPPGGRSRIPLPPASSPDCGFDGATRQMPPRIYPSLVDISPPEFRAPARCLQAVVFP 179
Query: 247 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 306
EG+ +P++D +PLD + D+ +
Sbjct: 180 PGEVVRLLEQEGVSLPDLDP-----------------------APLDPTFGSGLDQEPIG 216
Query: 307 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 366
G +GGY E VFRHAA+ LFG + G L +K ++N DF+EV LE +G LL AL YG
Sbjct: 217 HRGGGAGGYLEHVFRHAARELFGISV-GELTYKPLKNKDFQEVTLERDGSVLLHCALAYG 275
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 426
F+N+QN+V+K+K K Y +VEVMACP+GCLNGGGQI+ G S ++L++ E Y
Sbjct: 276 FRNIQNVVQKLKRGKSPYHYVEVMACPAGCLNGGGQIR-DDGASGRDLMRRTEQQY-AAA 333
Query: 427 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
P +P VR LY +WL GSE+A + +HT YH + K+ + W
Sbjct: 334 RSEPPEAHPGVRELYAQWLGGEGSERAAQLLHTRYHALEKAGASFNIKW 382
>gi|145543049|ref|XP_001457211.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425026|emb|CAK89814.1| unnamed protein product [Paramecium tetraurelia]
Length = 406
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 226/436 (51%), Gaps = 57/436 (13%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSS---KQQAEPVKISLKDCLA 61
FS T++I +SD+I PSQ CV L + D P + K Q K+SL+DCLA
Sbjct: 2 FSSTIKISSVSDYIVPSQECVKPLMRNVKLQLDDPSIQLKPNLIKNQNNVAKVSLQDCLA 61
Query: 62 CSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTT 121
CSGC+T+AET++++ QSL+EFL I K + I +SPQ+RASL+ + ++ L
Sbjct: 62 CSGCVTTAETILIQTQSLEEFLQAIKKYQNPAIGISPQARASLSYVLNYTDSEMHSILHQ 121
Query: 122 FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICY 181
+ + VK ++D + + T I A N I +K++ + P+L S CPGW+CY
Sbjct: 122 IFQEMNVK-LYDLA---EYTKI-AINNSIKEFKETNLT---------PLLCSECPGWVCY 167
Query: 182 AEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE 241
AEK L I+ ++S VKSPQQ GA K + Y T+MPCYDKKLEA R+
Sbjct: 168 AEKTLDESIINHMSKVKSPQQIFGAIQKK----------NHDYLATIMPCYDKKLEAVRQ 217
Query: 242 DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301
+ +E + I VL++ E+ ++ + + + + D
Sbjct: 218 E------------NNEDINI-----VLSSREIEQFVKDYIQKANIIPQQVQLQTMAIQDQ 260
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG-KTLLK 360
E H SS Y + + + + +++ +N DF E+ + E ++
Sbjct: 261 EYH----NTSSNNYLDYIIKSVMMPNWT------VKYNIRKNKDFIEITIYNENMESQGI 310
Query: 361 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK-PKPGQSPKELIKTLE 419
+A +G +N+ N+V ++K + C Y++VE+MACP GCLNGGGQI+ K + +LI L+
Sbjct: 311 YARVFGLKNIANLVSQIKTKTCKYKYVEIMACPLGCLNGGGQIQIQKNTEKAIDLIPKLK 370
Query: 420 TIYL-ENVMLADPFKN 434
I + + V + + ++N
Sbjct: 371 EIMISQKVQIDNQYQN 386
>gi|255728047|ref|XP_002548949.1| hypothetical protein CTRG_03246 [Candida tropicalis MYA-3404]
gi|240133265|gb|EER32821.1| hypothetical protein CTRG_03246 [Candida tropicalis MYA-3404]
Length = 537
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 230/491 (46%), Gaps = 100/491 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL-------KKATFK-------------NPDKPQVSTS 44
S L DL+DFI+P C+ L + TF NP +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPLTEDNSKDENTTFNENGEVEIQIDDQGNPLEISQIDG 60
Query: 45 SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-NKGKAVII-SLSPQSRA 102
+ P +ISL DCLACSGCITSAE V++ + S E ++ + N+G V + S+S QSRA
Sbjct: 61 KQTNLSPAQISLSDCLACSGCITSAEEVLVAQHSHQELVNALENRGDRVFVASVSQQSRA 120
Query: 103 SLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + +S + K L F+ +G + TS R L+LI I + K+++E ++
Sbjct: 121 SLALAYNLSMDDIDKLLINLFIHQMGFTYVVGTSLGRKLSLINEAQSLITK-KENKELNN 179
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
P+LSS CPGW+ YAEK Y+LP IS+VKSPQQ G +K L
Sbjct: 180 G------PVLSSICPGWVLYAEKT-HPYVLPRISTVKSPQQITGCLLKSLTASSLQIPKS 232
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
++YHV++MPC+DKKLE+AR + D+ EE+ +P+VD VLT E++ LI+ ++
Sbjct: 233 KVYHVSIMPCFDKKLESARPEI---YDTSEES-------VPDVDCVLTAKELVTLIEEQS 282
Query: 282 VNFEALEESPLDKMLTNVDDEGHLY-----------------GVAGSSGGYAETVFRHAA 324
+ L E + +L +Y +SGGYA +
Sbjct: 283 PKYSLLPEDKISSILQINTPMSEIYQRCAPPNWPFIEYSWSNDPGSASGGYAYNYLKIFQ 342
Query: 325 KTLF--GKVIEGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-- 378
+ L G +TI RN D E+ L G+ L A+ GF+N+QN+VRK+K
Sbjct: 343 ENLLVKGGYDAEKFMLQTINGRNPDIYELRLMYNGEKLASSAVVNGFRNIQNLVRKLKPT 402
Query: 379 ----------------------------------MRKCDYQFVEVMACPSGCLNGGGQIK 404
K DY VE+MACP+GC+NGGGQI
Sbjct: 403 AGGKSTVKSNPLAARRRARISTRDKSDTSEETADASKVDY--VEIMACPNGCINGGGQIS 460
Query: 405 PKPGQSPKELI 415
+ KE I
Sbjct: 461 APSTIAEKEWI 471
>gi|119500160|ref|XP_001266837.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Neosartorya fischeri NRRL 181]
gi|259511269|sp|A1CWD8.1|NAR1_NEOFI RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|119415002|gb|EAW24940.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Neosartorya fischeri NRRL 181]
Length = 597
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 224/487 (45%), Gaps = 98/487 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKPQVSTSSKQQAE---PVKISLKD 58
S L DL+DFI+P C V SL + ++ + +V+ K Q E P +ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVESLPQKESQSENPYEVTKEDKVQPENLPPAQISLTD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNI------------------NKGKA------VII 94
CLACSGC+TSAE V++ QS E L+ + N G A +
Sbjct: 61 CLACSGCVTSAEAVLISLQSHTEVLNTLDLYPELPLDFASDQRGTQNVGSADSDSRIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GI+ + + FL G + DT+ R+ L
Sbjct: 121 SVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTNVMREAVLA 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
+E + +S P+LSSACPGWICYAEK +ILP++S +KSPQ
Sbjct: 181 LTADEVTNSLLSTGSGSLPKS----PILSSACPGWICYAEKT-HPFILPHLSRLKSPQAL 235
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
G +K + + LG P +I+H+ +MPC+DKKLEA+RE+ + + + + +
Sbjct: 236 SGTFLKSVLSKALGVSPSQIWHLAIMPCFDKKLEASREELT-DIAWASTSAESQTTPVRD 294
Query: 264 VDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVDDEGHLYGVAG 310
VD V+TT E+L L + ++ L + LD L + +G
Sbjct: 295 VDCVITTRELLTLASARGLSLPNLPLKALPASCSTPFPDQALDSFLFSKSSSDQTVE-SG 353
Query: 311 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG-KTLLKFALCYGFQN 369
+SGGY H K + + + RN+D E L G + LLK A YGF+N
Sbjct: 354 TSGGY----LHHVLKIFQARNPGSKIVTQRGRNADVVEYVLMSSGDEPLLKAARYYGFRN 409
Query: 370 LQNIVRKVKMRK--------------------------------CDYQFVEVMACPSGCL 397
+QN+VRK+K + DY +VEVMACP GC
Sbjct: 410 IQNLVRKLKPARVSRLPGAKPQAVTSSANRRQPMSRNAAPAGTGADYAYVEVMACPGGCT 469
Query: 398 NGGGQIK 404
NGGGQI+
Sbjct: 470 NGGGQIR 476
>gi|343958306|dbj|BAK63008.1| nuclear prelamin A recognition factor isoform a [Pan troglodytes]
Length = 290
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 174/292 (59%), Gaps = 16/292 (5%)
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
ML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V
Sbjct: 1 MLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVA 60
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PCYDKKLEA +E L D VLT+GE+ +++ + ++ +
Sbjct: 61 PCYDKKLEALQESLPPALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRD 106
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
+ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV
Sbjct: 107 AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEV 165
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G
Sbjct: 166 TLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGH 225
Query: 410 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 226 ADKALLRQMEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 276
>gi|405122167|gb|AFR96934.1| iron hydrogenase [Cryptococcus neoformans var. grubii H99]
Length = 650
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 153/434 (35%), Positives = 222/434 (51%), Gaps = 89/434 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTS---------------- 44
FS L I DL DF+ PSQ C++ + K A + P + + ++
Sbjct: 3 FSGALTITDLDDFLTPSQACIIPVRNNKKPAQDEGPTEIHIDSNNNYYEVSTYPSVGHDD 62
Query: 45 ----SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-------------N 87
SK+ E +I+L DCLACSGCITS E++++ QS +E L I +
Sbjct: 63 GIENSKKALEKAEINLNDCLACSGCITSTESLLITMQSQNEILQFIKTNPTTTDPDSPCH 122
Query: 88 KGKAVIISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKSL--GVKSIFDTSCSR 138
K + I+S+SPQ+ ASL+ + + PL V +++ TFL G ++DT+ +R
Sbjct: 123 KPRLPILSISPQTLASLSAAYATASSRHPIPLLVLLRRIRTFLSQPENGSWRVWDTTFAR 182
Query: 139 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 198
++L E+ EF R + ++ + +PML+SACPGW+CYAEK G +LP +S+ +
Sbjct: 183 HMSLRESVMEFHERKDEKEKG----KAAEMPMLASACPGWVCYAEKAQGD-MLPLLSAAR 237
Query: 199 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 258
S Q IGA K KL ++PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 238 SSQGIIGALAKSWYGPKLQYKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR------- 290
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVN------------FEALEESPLDKMLTNVDDEGHLY 306
+VD VLTTGE+ L+Q N + A E+ P ++LT+ EG
Sbjct: 291 ----DVDCVLTTGELDLLLQELGFNPHVPVANESTPSYSATEDYPFPELLTH---EG--- 340
Query: 307 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKTLLKFAL 363
SSG Y +T+ ++ + + IR S D E ++ V G+ + K A
Sbjct: 341 ---SSSGSYLQTIIHDVQRSHPNPT---RITTREIRGSTDNIEYLIQDTVTGQVIFKGAK 394
Query: 364 CYGFQNLQNIVRKV 377
YGF+NLQN+VRKV
Sbjct: 395 VYGFRNLQNLVRKV 408
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 386 FVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 422
FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 474 FVEVMACPGGCVNGGGQMKPTVPTLSAPEAMEVDEEGY 511
>gi|426346277|ref|XP_004040806.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Gorilla
gorilla gorilla]
Length = 290
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 174/292 (59%), Gaps = 16/292 (5%)
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
ML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V
Sbjct: 1 MLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVA 60
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PCYDKKLEA +E L D VLT+GE+ +++ + ++ +
Sbjct: 61 PCYDKKLEALQESLPPALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRD 106
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
+ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV
Sbjct: 107 AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEV 165
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G
Sbjct: 166 TLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGH 225
Query: 410 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 226 ADKALLRQMEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 276
>gi|269216954|ref|ZP_06160808.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122]
gi|269129761|gb|EEZ60845.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122]
Length = 583
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 215/422 (50%), Gaps = 41/422 (9%)
Query: 51 PVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P ++ C+ C C+ ++EK +DE + + + K V + ++P RA+L E F
Sbjct: 189 PSGLAAASCVNCGQCVAVCPVGALVEKTCIDEVNAALADPKKYVAVQVAPAVRAALGEDF 248
Query: 109 GIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
+ V ++ L+ LG +FDT DLT++E NE + R +
Sbjct: 249 EFPLGIDVEGRIAEGLRLLGFDKVFDTKFGADLTIVEEANELVDRIAH---------DGV 299
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LPM++S CPGWI YAE +L ISS KSP Q GA +K + ++ G ++I V+
Sbjct: 300 LPMITSCCPGWIKYAE-HFYPDMLDNISSCKSPHQMHGAIVKSFLAEREGLDKEDIVTVS 358
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
VMPC KK E R D ++G +P+VD V+TT E+ + + + EA+
Sbjct: 359 VMPCTAKKFECTRND-------------EDGAGVPDVDIVVTTNELAKMFKDAGIQLEAM 405
Query: 288 E-ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SD 345
+ D L G ++G +SGG E R A +T+ GK ++ EF +R +
Sbjct: 406 NPATAYDHPLGFGTGAGIIFG---ASGGVMEAALRTACETISGKELDA-FEFAAVRGMAG 461
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
+E +++++G + + A+ G N ++ KVK + DYQF+EVMACP GC+NGGGQ P
Sbjct: 462 IKEASVDIDGADV-RVAVVSGLANANMLLTKVKNGEADYQFIEVMACPGGCVNGGGQ--P 518
Query: 406 KPGQSPKELIKT----LETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
G + L +Y + + +NP ++ LYDE+LE+PGSE+A + +HT
Sbjct: 519 HQGAYARRLADVPAARAAALYGNDSESEVRKSHENPYIKLLYDEYLEKPGSERAHRLLHT 578
Query: 460 EY 461
Y
Sbjct: 579 TY 580
>gi|451848135|gb|EMD61441.1| hypothetical protein COCSADRAFT_39174 [Cochliobolus sativus ND90Pr]
Length = 621
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/507 (30%), Positives = 231/507 (45%), Gaps = 119/507 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP---QVSTSSKQQAEPVK----ISLK 57
S L DL+DFI+P C+ ++ + + +V+T K A ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPVQKEETSNAYEVTTEEKAAASQPPPPASISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L+ ++K
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHTEVLTTLDKYRSLRALWQTQNGTNGVANGCGHNGTSSA 120
Query: 89 ---------GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVKS-------- 130
GK + S+SPQ+RASLA F +S ++ ++ L G+++
Sbjct: 121 INGSQNETEGKLFVASVSPQTRASLAAVFNVSEVEAGNMISQLLSGPNGLRTSSNKGSDF 180
Query: 131 --IFDTSCSRDLTLIEACNEFI-----ARYKQSQESDDERSNSSLP---MLSSACPGWIC 180
+ DT+ R+ L+ A +E K S + E + ++P +L+SACPGWIC
Sbjct: 181 TWVIDTNAVREACLVAAADEVTNALSPTAAKASPQPGSEGAIDTIPKAPILTSACPGWIC 240
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK Y+LP++S +KSPQ G +K + ++ P +I+H+ +MPC+DKKLEA+R
Sbjct: 241 YAEKTH-PYVLPHLSRLKSPQALTGTLVKSVLSERYHVHPSQIWHLAIMPCFDKKLEASR 299
Query: 241 ED-----FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP---- 291
+ ++ + EE RD D V+T E+L L + +NF L SP
Sbjct: 300 GELTSAPWLPSYNQSEEKIRD-------TDCVITARELLHLAAARGINFANLPRSPLSQS 352
Query: 292 ---------LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
LD L + AG SGGY H +T + + R
Sbjct: 353 DRIPFPDPKLDAFLFPSSRRKNQSVAAGPSGGY----LYHILQTYQAQNPGSLISVVRGR 408
Query: 343 NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-------------------- 382
N+D E ++ +T++K A YGF+N+QN+VR++K +
Sbjct: 409 NADVVEYSVVQGSETIIKAARFYGFRNIQNLVRRLKPARASRLPGGKTGVSRKPGGAGAA 468
Query: 383 -----DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQ+K
Sbjct: 469 GEGVKDYAYVEVMACPGGCTNGGGQVK 495
>gi|326475687|gb|EGD99696.1| iron-sulfur cluster assembly associated protein Nar1 [Trichophyton
tonsurans CBS 112818]
Length = 597
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 233/488 (47%), Gaps = 99/488 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSK---QQAEPVKISLKDCL 60
S L DL+DFI+P C+ ++ K + P +V+T K Q P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKKQEENPYEVTTEDKLEEQNPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----------------GKAVIISLSPQSRASL 104
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASL
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDANPEIQLDGEGGAEARDGKIFVASVSPQVRASL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACNEFIARY 153
A +GIS + FL G + DT+ R L + E
Sbjct: 121 ASTYGISERNAGYMIEQFLSGPNGLRAGGQHGSGFTWVVDTNIMRQAVLELSTAEVAESL 180
Query: 154 KQSQ--ESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
+ DE S+P +L+S+CPGWICYAEK ++LP++S +KSPQ G +
Sbjct: 181 NAAAPLTPHDESGKFSIPNRPILASSCPGWICYAEKTH-PHVLPHLSRLKSPQALTGTFL 239
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-----IPE 263
K I +KL P +I+H+ VMPC+DKKLEA+R++ + ++R E L+ + +
Sbjct: 240 KTIISKKLNISPSQIWHLAVMPCFDKKLEASRQELT------DVSWRGEALDKASSPVRD 293
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALE--------ESPL-DKMLT---NVDDEGHLY--GVA 309
VD V+T+ E+L L + ++ +L ++P D+ + + + H A
Sbjct: 294 VDCVITSKELLMLASSRNISLPSLPLEPLPTHLQTPFPDQTIAQFLSTSNTLHFTQPAAA 353
Query: 310 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQ 368
G SGGY H T K + ++ + RN+D E L G+ ++K A YGF+
Sbjct: 354 GPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSAAGEPIIKAARYYGFR 409
Query: 369 NLQNIVRKVKMRK--------------------------------CDYQFVEVMACPSGC 396
N+QN+VRK+K + ++ +VEVMACP GC
Sbjct: 410 NIQNLVRKLKPARASRLPGSRANGPGARARPAPVSNGKPGAPIPPAEFAYVEVMACPGGC 469
Query: 397 LNGGGQIK 404
NGGGQI+
Sbjct: 470 TNGGGQIR 477
>gi|261191831|ref|XP_002622323.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis SLH14081]
gi|239589639|gb|EEQ72282.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis SLH14081]
Length = 621
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 236/507 (46%), Gaps = 124/507 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVV---SLKKATFKNPDKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ +L KN + +V+T K + E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPHKEVKNSENAYEVTTEDKIEPENPPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN----------KGKAV--------------- 92
DCLACSGC+TSAE V++ QS E L+ ++ G V
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLNTLDSCPELRIDERNGHGVAQTLRDDAGFSAAGQ 120
Query: 93 -----------IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKS 130
I S+SPQ RASLA +GIS + + FL G
Sbjct: 121 QSIAEGDKKIFIASVSPQVRASLAATYGISERKAGWLIEQFLGGPQGLRAGGAHGNGFAW 180
Query: 131 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL--------PMLSSACPGWICYA 182
+ DT+ R + L + NE + ES ++ + SL P+LSSACPGWICYA
Sbjct: 181 VVDTNVMRQVFLELSVNEVM-------ESLEDSGSPSLEGFPIPKRPVLSSACPGWICYA 233
Query: 183 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 242
EK ++LP+IS +KSPQ G +K + + L P +I+H+ +MPC+DKKLEA+R++
Sbjct: 234 EK-THPHVLPHISRLKSPQALTGTLLKTVLSKALNISPAQIWHLAIMPCFDKKLEASRQE 292
Query: 243 FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE 302
S + + + +VD V+T+ EVL L + ++ + L PL T + +
Sbjct: 293 LTDA--SWQSSSSTTHSPVRDVDCVITSREVLMLATSRNISLQNLPLQPLPSSYTPLFPD 350
Query: 303 GHLY-------------GVAGSSGGY---AETVFRHAAKTLFGKVIEGHLEFKTIRNSDF 346
+L AG+SGGY T ++H + ++ + RNSD
Sbjct: 351 PYLASFLFPKSGPSTQPSTAGTSGGYLFHILTAYQH-------RNPGSQIQTQRGRNSDV 403
Query: 347 REVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------- 382
E +L G T++K A YGF+N+QN+VRK+K +
Sbjct: 404 IEYSLTSPSGDTIIKAARYYGFRNIQNLVRKLKPPRASRLPGAKPMIGRRAGSGRATAAN 463
Query: 383 -----DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQI+
Sbjct: 464 NTSATDYAYVEVMACPGGCTNGGGQIR 490
>gi|443894303|dbj|GAC71651.1| nuclear architecture related protein [Pseudozyma antarctica T-34]
Length = 698
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 214/438 (48%), Gaps = 79/438 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA--------------- 49
FS L + DL+D++ PSQ C+ ++ P+ + QA
Sbjct: 3 FSGALTLTDLNDYLGPSQACIKPVEGPDAPAPEPEPEPLDAAAQASTQIAIDHDGSYYES 62
Query: 50 ----------------EPVKISLKDCLACSGCITSAETVMLEKQSLDEF------LSNIN 87
E +ISL DCLACSGC+TSAE+V++ QS +E + +
Sbjct: 63 SASTSTASKPRERTKLETAEISLNDCLACSGCVTSAESVLITMQSQEELRRAVQEIRDAG 122
Query: 88 KGKAVIISLSPQSRASLAEHFGIS------PLQ-VFKKLTTFLKS-LGVKSIFDTSCSRD 139
+ ++ S+SPQS ASL+ + + PL + +++ FL++ G ++DT+ +R
Sbjct: 123 QPSLLVASISPQSLASLSAKYTFNSAHPELPLDLLLHRISHFLRAQFGFDYVYDTTFARH 182
Query: 140 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 199
+ L E NEF R S D SLPML+SACPGWICYAEK G +LPYIS+ KS
Sbjct: 183 IALQEHTNEFFERRSNSSAGAD---GPSLPMLASACPGWICYAEKTHGE-LLPYISATKS 238
Query: 200 PQQTIGATIKHHICQKLGFRPD-EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 258
PQQ G K + +L D +YHVTVMPCYDKKLEA+R DF ++ +
Sbjct: 239 PQQLAGVIAKRFLPHRLHLAADTTVYHVTVMPCYDKKLEASRPDFYNEVTRSK------- 291
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVNFEAL---EESPLDKMLTNVDDEGHLYGVAG-SSGG 314
+VD VLTTGE+ L+ + + E+ L T+ L G SSGG
Sbjct: 292 ----DVDCVLTTGELDTLMHDQGFDITQPLPNEQDALSHPSTSAVTLPRLLDQPGSSSGG 347
Query: 315 YAETVFR--------HAAKTLFGKVIEG----HLEFKTIRNSDFREVALE--VEGKTLLK 360
Y + R H A L V E L+ + IR +DF E L + L +
Sbjct: 348 YMFALMRAVWADWIAHNAPRLPESVRESGVMPKLDVRVIRTADFTEYLLRDPLSSSVLFR 407
Query: 361 FALCYGFQNLQNIVRKVK 378
A CYGF+NLQN+VRK++
Sbjct: 408 GAQCYGFRNLQNLVRKLQ 425
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 384 YQFVEVMACPSGCLNGGGQIKP 405
Y +VEVMACPSGC+NGGGQI+P
Sbjct: 497 YDYVEVMACPSGCVNGGGQIRP 518
>gi|326484607|gb|EGE08617.1| LET1 [Trichophyton equinum CBS 127.97]
Length = 597
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 233/488 (47%), Gaps = 99/488 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSK---QQAEPVKISLKDCL 60
S L DL+DFI+P C+ ++ K + P +V+T K Q P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKKQEENPYEVTTEDKLEEQNPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----------------GKAVIISLSPQSRASL 104
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASL
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDANPEIRLDGEGGAEARDGKIFVASVSPQVRASL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACNEFIARY 153
A +GIS + FL G + DT+ R L + E
Sbjct: 121 ASTYGISERNAGYMIEQFLSGPNGLRAGGQHGSGFTWVVDTNIMRQAVLELSTAEVAESL 180
Query: 154 KQSQE--SDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
+ DE S+P +L+S+CPGWICYAEK ++LP++S +KSPQ G +
Sbjct: 181 NAAAPLTPHDESGKFSIPNRPILASSCPGWICYAEKTH-PHVLPHLSRLKSPQALTGTFL 239
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-----IPE 263
K I +KL P +I+H+ VMPC+DKKLEA+R++ + ++R E L+ + +
Sbjct: 240 KTIISKKLNTPPSQIWHLAVMPCFDKKLEASRQELT------DVSWRGEALDKASSPVRD 293
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALE--------ESPL-DKMLT---NVDDEGHLY--GVA 309
VD V+T+ E+L L + ++ +L ++P D+ + + + H A
Sbjct: 294 VDCVITSKELLMLASSRNISLPSLPLEPLPTHLQTPFPDQTIAQFLSTSNTLHFTQPAAA 353
Query: 310 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQ 368
G SGGY H T K + ++ + RN+D E L G+ ++K A YGF+
Sbjct: 354 GPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSAAGEPIIKAARYYGFR 409
Query: 369 NLQNIVRKVKMRK--------------------------------CDYQFVEVMACPSGC 396
N+QN+VRK+K + ++ +VEVMACP GC
Sbjct: 410 NIQNLVRKLKPARASRLPGSRANGPGARARPAPVSNGKPGAPIPPAEFAYVEVMACPGGC 469
Query: 397 LNGGGQIK 404
NGGGQI+
Sbjct: 470 TNGGGQIR 477
>gi|266619028|ref|ZP_06111963.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479]
gi|288869449|gb|EFD01748.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479]
Length = 587
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 215/416 (51%), Gaps = 46/416 (11%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK +DE + I + K VI+ +P RA L E FG P+
Sbjct: 197 CVSCGQCIAVCPTGALYEKSCIDEVAAAIADPSKHVIVQTAPAVRAGLGEEFGY-PIGTN 255
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G +FDT+ S DLT++E +EFI R K + +LPM++S
Sbjct: 256 VEGKMAAALRRIGFDKVFDTNFSADLTIMEEAHEFIERVK---------NGGTLPMITSC 306
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +S+ KSPQQ GA K + +K+G +P++I V+VMPC K
Sbjct: 307 SPGWIKYCEHYFPD-MTDNLSTCKSPQQMFGAIAKSYYAEKMGLKPEDIVSVSVMPCTAK 365
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D+Q+ P+VD +TT E+ +I+ + F L + D
Sbjct: 366 KFEIGR-------DNQDAN------GCPDVDYSMTTRELARMIKKYGIRFNELPDEEFDA 412
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
L G G A G++GG E R A +TL G+ +E ++F +R ++ +E
Sbjct: 413 PL------GLGTGAAVIFGATGGVMEAALRTAVETLTGEELE-KVDFTDVRGTEGIKEAV 465
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ +VK + DY F+E+M CP GC+NGGGQ + +PG
Sbjct: 466 YNVAGMDV-KVAVASGLGNAKELLNRVKSGEADYHFIEIMGCPGGCVNGGGQPQ-QPGSV 523
Query: 411 PKEL-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ I+ L L + A+ + NP ++ LY+ +L +PGSEKA +HT Y
Sbjct: 524 RNTVDIRALRAKVLYDEDAANTIRKSHENPAIKELYETYLGKPGSEKAHHLLHTTY 579
>gi|239608619|gb|EEQ85606.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis ER-3]
gi|327353755|gb|EGE82612.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 621
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 236/507 (46%), Gaps = 124/507 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVV---SLKKATFKNPDKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ +L KN + +V+T K + E P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPHKEVKNSENAYEVTTEDKIEPENLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN----------KGKAV--------------- 92
DCLACSGC+TSAE V++ QS E L+ ++ G V
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLNTLDSCPELRIDERNGHGVAQTLRDDAGFSAAGQ 120
Query: 93 -----------IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKS 130
I S+SPQ RASLA +GIS + + FL G
Sbjct: 121 QSIAEGDKKIFIASVSPQVRASLAATYGISERKAGWLIEQFLGGPQGLRAGGAHGNGFAW 180
Query: 131 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL--------PMLSSACPGWICYA 182
+ DT+ R + L + NE + ES ++ + SL P+LSSACPGWICYA
Sbjct: 181 VVDTNVMRQVFLELSVNEVM-------ESLEDSGSPSLEGFPIPKRPVLSSACPGWICYA 233
Query: 183 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 242
EK ++LP+IS +KSPQ G +K + + L P +I+H+ +MPC+DKKLEA+R++
Sbjct: 234 EKTH-PHVLPHISRLKSPQALTGTLLKTVLSKALNISPAQIWHLAIMPCFDKKLEASRQE 292
Query: 243 FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE 302
S + + + +VD V+T+ EVL L + ++ + L PL T + +
Sbjct: 293 LTDA--SWQSSSSTTHSPVRDVDCVITSREVLMLATSRNISLQNLPLQPLPSSYTPLFPD 350
Query: 303 GHLY-------------GVAGSSGGY---AETVFRHAAKTLFGKVIEGHLEFKTIRNSDF 346
+L AG+SGGY T ++H + ++ + RNSD
Sbjct: 351 PYLASFLFPKSGPSTQPSTAGTSGGYLFHILTAYQH-------RNPGSQIQTQRGRNSDV 403
Query: 347 REVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------- 382
E +L G T++K A YGF+N+QN+VRK+K +
Sbjct: 404 IEYSLTSPSGDTIIKAARYYGFRNIQNLVRKLKPPRASRLPGAKPMIGRRAGSGRATAAN 463
Query: 383 -----DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQI+
Sbjct: 464 NTSATDYAYVEVMACPGGCTNGGGQIR 490
>gi|310790892|gb|EFQ26425.1| iron only hydrogenase large subunit domain-containing protein
[Glomerella graminicola M1.001]
Length = 585
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 225/489 (46%), Gaps = 109/489 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPV------------ 52
S L DL+DFI+P C+ ++ P P S + E +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETL----PSAPPPSQDPSLEHEVILDGQPSSAAANA 56
Query: 53 ---KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV----------------- 92
+ISL DCLACSGC+TSAE V++ QS E L ++ G A+
Sbjct: 57 PPAEISLTDCLACSGCVTSAEAVLVSMQSHTEVLHTLDFGPALRIVGPDDDGQFRVDGLE 116
Query: 93 -------IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL---------------GVKS 130
+ S+SPQ+RASLA G + K+ L+ L G
Sbjct: 117 DESRRLFVASVSPQTRASLAAAAGKGTTE--KEAGHMLERLLGGPDGLASAGKHNNGFTW 174
Query: 131 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 190
+ DT+ +R+ L+ +E ++ D S+++ P+L+S+CPGW+CYAEK Y+
Sbjct: 175 VLDTNVAREACLVLGADEVLS------AEDAPASSATKPILTSSCPGWVCYAEKTH-PYV 227
Query: 191 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 250
LP++S VKSPQ +G +K + +KLG P I+H+ VMPC+DKKLEA+RE+ DS
Sbjct: 228 LPHLSRVKSPQALMGTLLKTTLSKKLGIPPSRIWHLAVMPCFDKKLEASREELT---DSV 284
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP------------LDKMLTN 298
G + +VD V+T+ EVL L + + NF L S LDK L
Sbjct: 285 WAGDGMPGRGVRDVDCVITSKEVLMLAESRGFNFFDLARSKPSFERVFFPDARLDKFLFP 344
Query: 299 VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKT 357
AG+SGG +T+ K ++ RN+D E + G
Sbjct: 345 GRIAHRSSQAAGTSGGN----LYFTLQTVVSKHPGSQIQVVRGRNADVVEFIVASPAGDP 400
Query: 358 LLKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSG 395
+ K A YGF+N+QN+VRK+K + +Y +VEVMACP G
Sbjct: 401 IFKAARYYGFRNIQNLVRKLKPARPSRMPGGKAFGAARRPAGKSAGLEYAYVEVMACPGG 460
Query: 396 CLNGGGQIK 404
C NGGGQIK
Sbjct: 461 CTNGGGQIK 469
>gi|115391081|ref|XP_001213045.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121739525|sp|Q0CR17.1|NAR1_ASPTN RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|114193969|gb|EAU35669.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 599
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 231/501 (46%), Gaps = 122/501 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---DKP-QVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ ++ K P D P +V+T K QAE P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIESLPSKQPQKSDNPYEVTTEDKVQAENPTPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNIN------------------------KGKAVI 93
DCLACSGC+TSAE V++ QS E L+ ++ +G+ +
Sbjct: 61 DCLACSGCVTSAEAVLISLQSHTEVLNTLDAHPELRLIQNEQGTSLDPRSAQDDEGRIFV 120
Query: 94 ISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL---------------GVKSIFDTSCSR 138
S+SPQ RASLA +G+S K+ T+ + L G + DT+ R
Sbjct: 121 ASVSPQVRASLAATYGVSE----KEATSIIHQLLSGPHGLRAGGKHGSGFTWVIDTNIMR 176
Query: 139 DLTLIEACNEFIARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYIS 195
+ L+ +E S E + SLP ++SSACPGW+CYAEK +ILP++S
Sbjct: 177 EAVLVLTADEV------SDTLASEAKDPSLPKKPIVSSACPGWVCYAEKT-HPFILPHLS 229
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV--------FQL 247
+KSPQ G +K + + LG I+H+ VMPC+DKKLEA+RE+ Q+
Sbjct: 230 KLKSPQALAGTLLKSTLSKTLGVPVSRIWHLAVMPCFDKKLEASREELTDVTWNPADGQM 289
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF------------EALEESPLDKM 295
SQ +T + +VD V+TT E+L L + ++ + + LD
Sbjct: 290 FSQPQT------PVRDVDCVITTRELLTLASARGISLPSILSKSSSVSFPSFPDKALDDY 343
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVE 354
L + + G+SGGY H + + + + RN+D L E
Sbjct: 344 LFSKRSLSAQSMMTGTSGGY----LHHVLTSFQARNPGSEIVAERGRNADVVVYKLVSPE 399
Query: 355 GKTLLKFALCYGFQNLQNIVRKVK-------------------------------MRKCD 383
++++ A YGF+N+QN+V K+K K D
Sbjct: 400 NGSIIEAARYYGFRNIQNLVNKLKPPEMSKLSGARRNDALGGKARMQLSSRKAAAKTKFD 459
Query: 384 YQFVEVMACPSGCLNGGGQIK 404
Y +VEVMACP GC NGGGQI+
Sbjct: 460 YAYVEVMACPGGCTNGGGQIR 480
>gi|120538591|gb|AAI29941.1| NARFL protein [Homo sapiens]
Length = 233
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 153/247 (61%), Gaps = 14/247 (5%)
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ + V+ LE
Sbjct: 1 MPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEEGVSLPDLE 49
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
+PLD + + E G SGGY E VFRHAA+ LFG + + +K +RN DF+E
Sbjct: 50 PAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKPLRNKDFQE 108
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
V LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGGGQ++ P
Sbjct: 109 VTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQ-APD 167
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+ +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+YH V K+
Sbjct: 168 RPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKAS 226
Query: 469 TAQLHNW 475
T W
Sbjct: 227 TGLGIRW 233
>gi|405972741|gb|EKC37491.1| Cytosolic Fe-S cluster assembly factor narfl [Crassostrea gigas]
Length = 261
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 170/274 (62%), Gaps = 15/274 (5%)
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+G+ +K + K G PD+IYHVTVMPCYDKKLEA+R+DF L YR +
Sbjct: 1 MGSLVKDYFAAKQGQTPDQIYHVTVMPCYDKKLEASRQDFYSDL------YRTR-----D 49
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD--DEGHLYGVAGSSGGYAETVFR 321
VD V+TTGEV +++ + V +E + +L+ D G + G SGGY E V R
Sbjct: 50 VDCVITTGEVEKMLEKENVTLGQVEGNTAYCVLSGFGSPDGGLGSHLGGGSGGYLEHVMR 109
Query: 322 HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 381
+A + G ++ L++KT+RN DF+EV +E+EGK LK AL YGF+N+QNIV+K+K K
Sbjct: 110 YAVSQIHGSSVDS-LQYKTLRNQDFQEVTVEIEGKRPLKMALAYGFRNIQNIVQKIKRGK 168
Query: 382 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLY 441
Y FVE+MACPSGC NGGGQI+P GQ+ EL++ ++ Y ++V P P V+ +Y
Sbjct: 169 MTYDFVEIMACPSGCANGGGQIRPMEGQTNNELLQRVKESY-DSVPCVQPDLWPGVKDIY 227
Query: 442 DEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 475
+EWL +EKA+ +HT+YH V K +A W
Sbjct: 228 EEWLGGVDTEKARAMLHTQYHGVEKVASALNIQW 261
>gi|209880018|ref|XP_002141449.1| nuclear prelamin A recognition factor-like protein [Cryptosporidium
muris RN66]
gi|209557055|gb|EEA07100.1| nuclear prelamin A recognition factor-like protein, putative
[Cryptosporidium muris RN66]
Length = 584
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/510 (28%), Positives = 237/510 (46%), Gaps = 132/510 (25%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL-------------KKATFKNPDKPQVSTSSKQQAEP 51
FS L+IGDL DF+ +Q+CV L K++++K + + + ++ + E
Sbjct: 2 FSTALKIGDLDDFLQLTQDCVKPLLSSGNTSIKPDLIKQSSYKKKRQEEYNDTNSRYNEA 61
Query: 52 ----------VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSR 101
+++ DCL CSGC+T+AET++L+ + +EFL N+ K I+S+ QS
Sbjct: 62 YISKDGSKYAATVNVVDCLTCSGCVTAAETILLQHHNTNEFLKNVKLKKLTIVSICNQSC 121
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
A+ A I P++ +L K LG K + +++ S ++L+EA EFI RYK
Sbjct: 122 AAFASLLNIHPVEAMMRLCGLFKYLGAKYVINSTLSEFVSLLEAKEEFIFRYKY------ 175
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHIC-------- 213
+ ++P++ S CPGW+CYAEK L ++P +S V+S QQ G +K+ C
Sbjct: 176 -KDGQNIPVIVSHCPGWVCYAEKTLDPSVIPMLSRVRSSQQIQGVLVKNLTCFAHNSKVL 234
Query: 214 ------------------QKLGF-RPDEIYHVTVMPCYDKKLEAAREDF-VFQLDSQEET 253
++ F E+YHV + PCYDKKLE+ R ++S
Sbjct: 235 LYKWKQIWSYSMKIKQIAEQFDFVEQHELYHVCIAPCYDKKLESVRSYLPTSTINS---- 290
Query: 254 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKMLTNVD 300
+I EVD+VL T E+ DLI K+ F +L + P + M ++V
Sbjct: 291 ------DILEVDTVLATVEIQDLI--KSSGFNSLLDIPKRDLDNLWLDLDFIINMNSSVG 342
Query: 301 DEGHLYGVA---------------------------------GSSGGYAETVFRHAAKTL 327
+ + SGGY E +FR + L
Sbjct: 343 QNNEISDLTIENSADLKCIQATCSDIINGKRNNTWLLPSYYNSGSGGYCEYIFRSSVMEL 402
Query: 328 FGKVI--EGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-- 383
F I + LE+ T NS ++ +++ + LKF + GF+ +Q +V+K+ +R+ +
Sbjct: 403 FNVEIPKDTTLEY-THDNSGILQICFKIKNEVKLKFGIVNGFRAIQGVVKKLDIRRKEDS 461
Query: 384 -----------YQFVEVMACPSGCLNGGGQ 402
+ ++E+MACPSGC +GGGQ
Sbjct: 462 TEVPQKSAKDTFHYLEIMACPSGCTSGGGQ 491
>gi|255526809|ref|ZP_05393708.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296186425|ref|ZP_06854828.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7]
gi|255509488|gb|EET85829.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296048872|gb|EFG88303.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7]
Length = 574
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 217/410 (52%), Gaps = 40/410 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPLQ- 114
+C C C+ T + E + + +N +GK VI+ +P RA+L E FG+ +
Sbjct: 194 NCTFCGQCVAVCPTGALAEVNNTTKVWDALNTEGKLVIVQTAPAVRAALGEEFGLEYGKP 253
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+SLG +FDT + DLT++E E + R + LPML+S
Sbjct: 254 VTGKMVAALRSLGFDKVFDTDFAADLTIMEEATELMGRIT---------NGGKLPMLTSC 304
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGWI + E + S +L SS KSPQQ GA K + +K+ P +I V+VMPC K
Sbjct: 305 CPGWINFIEHEF-SDLLDSPSSCKSPQQMFGAVAKTYFAEKMNMDPKDIILVSVMPCLAK 363
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR +++S +VD V++T E+ +I+ +NFE L++ D
Sbjct: 364 KYEAARP----EMNS-------------DVDIVISTRELAKMIKEAGINFEKLQDEDFDS 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+L ++GV +GG E R A + + G+ ++ +++F+ +R D +E ++++
Sbjct: 407 LLGESTGAAVIFGV---TGGVMEAALRTAYEWITGETLD-NVDFEVVRGLDGIKEASIKI 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+ +K A+ G N + ++ K++ K DYQ +E+MACP GC++GGGQ P +
Sbjct: 463 K-DLEVKAAIVSGLGNARKLLNKIREGKADYQIIEIMACPGGCIDGGGQ--PYIHGKYEI 519
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L + +Y E N L +NP + LY+E+L +P SEKA K +HT+Y
Sbjct: 520 LKDRMNALYEEDKNKTLRKSHENPAIIKLYEEFLGKPNSEKAHKLLHTKY 569
>gi|70993576|ref|XP_751635.1| iron-sulfur cluster assembly associated protein Nar1 [Aspergillus
fumigatus Af293]
gi|74671683|sp|Q4WQ87.1|NAR1_ASPFU RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|259511264|sp|B0Y4F9.1|NAR1_ASPFC RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|66849269|gb|EAL89597.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus fumigatus Af293]
gi|159125441|gb|EDP50558.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus fumigatus A1163]
Length = 597
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 226/488 (46%), Gaps = 100/488 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKPQVSTSSKQQAE---PVKISLKD 58
S L DL+DFI+P C V SL + ++ + +V+ K Q E P +ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVESLPQKESQSENPYEVTKEDKVQPENLPPAQISLTD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINK------------------------GKAVII 94
CLACSGC+TSAE V++ QS E L+ ++ G+ +
Sbjct: 61 CLACSGCVTSAEAVLISLQSHTEVLNTLDSYPELPLGSTSYQRGTQKVGSADSDGRIFVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFDTSCSRDLTLI 143
S+SPQ RASLA +GI+ + + FL G + DT+ R+ L
Sbjct: 121 SVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTNVMREAVLA 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
+E + + +S P+LSSACPGWICYAEK +ILP++S +KSPQ
Sbjct: 181 LTADEVTSSLLSTGSGSLPKS----PILSSACPGWICYAEKT-HPFILPHLSRLKSPQAL 235
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
G +K + + LG P +I+H+ +MPC+DKKLEA+RE+ + + + + +
Sbjct: 236 SGTFLKSVLSKALGVPPSQIWHLAIMPCFDKKLEASREELT-DIAWASTFTQSQTTPVRD 294
Query: 264 VDSVLTTGEVLDLIQLK-------------AVNFEALEESPLDKMLTNVDDEGHLYGVAG 310
VD V+TT E+L L + A + L+ L + G +G
Sbjct: 295 VDCVITTRELLTLATARGLSLPNLPLKPLPASCLTPFPDQALESFLFSKSSSGQTV-ESG 353
Query: 311 SSGGYAETVFR-HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG-KTLLKFALCYGFQ 368
+SGGY V + A+ K++ + RN+D E L G + L + A YGF+
Sbjct: 354 TSGGYLHHVLQIFQARNPGSKIVT-----QRGRNADVVEYVLMSSGDEPLFRAARYYGFR 408
Query: 369 NLQNIVRKVKMRK--------------------------------CDYQFVEVMACPSGC 396
N+QN+VRK+K + DY +VEVMACP GC
Sbjct: 409 NIQNLVRKLKPARVSRLPGAKPQAVSSSANRRQPMSRNAAPAGTGADYAYVEVMACPGGC 468
Query: 397 LNGGGQIK 404
NGGGQI+
Sbjct: 469 TNGGGQIR 476
>gi|296807987|ref|XP_002844332.1| nuclear prelamin A recognition factor-like protein [Arthroderma
otae CBS 113480]
gi|238843815|gb|EEQ33477.1| nuclear prelamin A recognition factor-like protein [Arthroderma
otae CBS 113480]
Length = 610
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/480 (30%), Positives = 222/480 (46%), Gaps = 81/480 (16%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSKQQAE---PVKISLKDCL 60
S L DL+DFI+P C+ ++ K + +V+T K + E P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPKKKEENLYEVTTEDKLEEENPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK--------------GKAVIISLSPQSRASLAE 106
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASLA
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDASPEIRIGSADGAGCGKIFVASVSPQVRASLAA 120
Query: 107 HFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACNEFIARYKQ 155
+GIS + + L G + DT+ R L + E
Sbjct: 121 TYGISEKKAGYMIEQLLSGPSGLRAGGQHGSGFTWVVDTNIMRQAVLELSTAEVTESLAA 180
Query: 156 SQESDDERSNSSLPM-----LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
+ + + P+ L+S+CPGWICYAEK ++LP++S +KSPQ G +K
Sbjct: 181 ASSTSSRDGHGKFPIPNRPILTSSCPGWICYAEKTH-PHVLPHLSRLKSPQALTGTFLKT 239
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV-FQLDSQEETYRDEGLEIPEVDSVLT 269
I +KL P +I+H+ +MPC+DKKLEA+R++ ++ T + G I +VD V+T
Sbjct: 240 IISRKLNISPSQIWHLAIMPCFDKKLEASRQELTDVSWRNESNTMEESGSPIRDVDCVIT 299
Query: 270 TGEVLDLIQLKAVNFEALEESPL---------DKMLTNVDDEGHLYGVAGSSGGYAETVF 320
+ E+L L + + +L PL D+ ++ S+ G ++
Sbjct: 300 SKELLMLASSRNITLSSLPLEPLPAHYSTPFPDQTVSRFLSANAFRSTQSSAAGPSDGYL 359
Query: 321 RHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKM 379
H T + ++ + RN+D E L G ++K A YGF+N+QN+VRK+K
Sbjct: 360 HHLLTTYQSRHPNSIIQAQRGRNADVVEYTLVSATGDPIIKAARYYGFRNIQNLVRKLKP 419
Query: 380 RKC-----------------------------------DYQFVEVMACPSGCLNGGGQIK 404
+ ++ +VEVMACP GC NGGGQI+
Sbjct: 420 ARTSRLPGSRVIQPNPNGARTRPSPLANGKAATPAPPSEFAYVEVMACPGGCTNGGGQIR 479
>gi|402901473|ref|XP_003913673.1| PREDICTED: nuclear prelamin A recognition factor-like [Papio
anubis]
Length = 328
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 182/319 (57%), Gaps = 16/319 (5%)
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
+ C+ F + + D + + + + PGW+ YAE+ LG I ++ + KSPQQ
Sbjct: 12 LSGCSHFPVASRPAGSHDPQPGHRGWVLGPARAPGWVRYAERVLGRPITAHLCTAKSPQQ 71
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 262
+G+ +K + ++ P++I+HV V PCYDKKLEA +E F L T
Sbjct: 72 VMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPPALHGSRGT--------- 122
Query: 263 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 322
D VLT+GE+ +++ + +++++ +D + ++ ++ SS G+ +FRH
Sbjct: 123 --DCVLTSGEIAQIMEQGDL---SVKDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRH 177
Query: 323 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 382
AAK LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K
Sbjct: 178 AAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKF 236
Query: 383 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 442
Y FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + ++ LY
Sbjct: 237 PYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-ADIPVRRPESSAHMQELYQ 295
Query: 443 EWLEQPGSEKAKKHVHTEY 461
EWLE S KA++ +HT Y
Sbjct: 296 EWLEGINSPKAREVLHTTY 314
>gi|392579144|gb|EIW72271.1| hypothetical protein TREMEDRAFT_72706 [Tremella mesenterica DSM
1558]
Length = 701
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 221/449 (49%), Gaps = 95/449 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKA-------------TFKNPDKPQVST-------- 43
FS L I DL DF+ PSQ C++ ++ A N + +VST
Sbjct: 3 FSGALTITDLDDFLTPSQACIIPVRNAKPVKAGNGDTDIHIDANNNYYEVSTYSLSDVKG 62
Query: 44 -----SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL--------------- 83
SSK E +I+L DCLACSGCITS E++++ QS E L
Sbjct: 63 VNGAESSKTALEKAEINLNDCLACSGCITSTESLLITMQSHKEVLEFIAQRHPSTCTSET 122
Query: 84 ---SNINKG-----------KAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTF 122
S++N G + ++S+SPQ+ ASL+ +G I L + +++ T
Sbjct: 123 PCSSSVNGGCSSSSSHALETRTPVLSISPQTLASLSAAYGAKHNREPIPLLVLLRRIRTL 182
Query: 123 L--KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 180
L K G ++DT+ +R ++L E+ EF R + ++ + SLPML+SACPGW+C
Sbjct: 183 LDLKKHGGWKVWDTTFARHVSLKESIQEFEERSENAKGKG--VAKPSLPMLASACPGWVC 240
Query: 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 240
YAEK G +LP +S+ +S Q +GA +K QK+ P +IYHVT MPCYDKKLEA+R
Sbjct: 241 YAEKAQGD-MLPLLSATRSSQGVMGALVKQWWGQKMSLEPSQIYHVTAMPCYDKKLEASR 299
Query: 241 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE--------ESPL 292
DF S RD VD VLTTGE LDL+ L+ + F+ E SPL
Sbjct: 300 SDFY----SSVHNTRD-------VDCVLTTGE-LDLL-LQELGFDPYEPVPNDHLPSSPL 346
Query: 293 DKMLTNVDDEGHLYGVAGSSG-GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFR-EVA 350
+ T L GSS Y T+ H + L + +R SD E
Sbjct: 347 STISTAQLPWPELLNHPGSSSDSYLSTIISHISNIHPNPT---QLTVRKVRESDDNTEYF 403
Query: 351 LE--VEGKTLLKFALCYGFQNLQNIVRKV 377
LE V G + K A CYGF+NLQN+VR+V
Sbjct: 404 LEDTVTGDVIFKGARCYGFRNLQNLVRRV 432
>gi|254568180|ref|XP_002491200.1| Nuclear architecture related protein [Komagataella pastoris GS115]
gi|238030997|emb|CAY68920.1| Nuclear architecture related protein [Komagataella pastoris GS115]
gi|328352276|emb|CCA38675.1| hypothetical protein PP7435_Chr2-0995 [Komagataella pastoris CBS
7435]
Length = 503
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 230/492 (46%), Gaps = 117/492 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA------------EPV 52
S LR DL+DFI P C+ ++ + + ++ S+ A +
Sbjct: 1 MSAILRADDLNDFIMPGVACIKPVESGKKGSGEDLEIQIDSEGNALEVTKEGHERKLDKA 60
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKAVIISLSPQSRASLAEHFG 109
+ISL DCLACSGCITSAE V++ + S E L+ + K + S+S Q+RASLA F
Sbjct: 61 QISLSDCLACSGCITSAEEVLIAQHSHKELLNALETDGNRKVFVASISHQTRASLASAFD 120
Query: 110 ISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
+ + K L LK+ + K + T R L+ I + R S++
Sbjct: 121 VQIEAMDKVLIYLLKNVMKFKYVIGTETGRRLSHIFTTLDLQNRSPHSEK---------- 170
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S CPGW+ YAEK +ILP IS++KS QQ G +K+ + + LG +IYH++V
Sbjct: 171 PLINSTCPGWVLYAEKT-HPFILPRISTIKSTQQITGHLLKNIVSKDLGIEKSQIYHLSV 229
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA-L 287
MPC+DKKLEAAR+ ++P+VD V+T E++ +I+ ++ + L
Sbjct: 230 MPCFDKKLEAARDS-----------------DVPDVDCVITARELVQVIEELNIDLQTIL 272
Query: 288 EESPLDKMLTNVD----------------DEGHLYGVAGSSGGYAETVF-----RHAAKT 326
+ES LD N D ++ L +SGGYA RHA
Sbjct: 273 KESVLD----NTDIYSVYRSSSPPGWYQPEQSWLNNKGSASGGYAMQYLLDVQQRHADSE 328
Query: 327 LFGKVIEGHLEFKTIRNSDFREVALEV-EGKTLLKFALCYGFQNLQNIVRKVKMR----- 380
+ IEG RNSD E L + +G+ + A+ GF+N+QN++RK+K
Sbjct: 329 II--TIEG-------RNSDIYEHRLVLRDGQVVASSAVVNGFRNIQNLIRKLKPNHKATG 379
Query: 381 ------------------------------KCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
KCDY VE+MACP GC+NGGGQI Q+
Sbjct: 380 GGISARRRSRKLKEDQTGDQGQSNAVVDPSKCDY--VEIMACPGGCINGGGQIAAPADQN 437
Query: 411 PKELIKTLETIY 422
K+ I T Y
Sbjct: 438 SKDWINKATTKY 449
>gi|125972863|ref|YP_001036773.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125713088|gb|ABN51580.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 582
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 216/412 (52%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI L EK +D+ + N V++ +P R +L E FG+ P+ +
Sbjct: 191 CVNCGQCINVCPVGALREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEFGM-PIGSR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L LG K +FDT + DLT++E E I R K + LP+++S
Sbjct: 250 VTGKMVAALSRLGFKKVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +SS KSP + GA +K + QK G P +++ V++MPC K
Sbjct: 301 SPGWIKFCEHNYPEF-LDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVVSIMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + P+VD VLTT E+ +I+ ++F +L + D
Sbjct: 360 KFEAQRPEL-------------SSTGYPDVDVVLTTRELARMIKETGIDFNSLPDKQFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G ++GG E R + L GK + +E+ +R D +E ++E+
Sbjct: 407 PMGEASGAGVIFG---ATGGVMEAAIRTVGELLSGKPAD-KIEYTEVRGLDGIKEASIEL 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
+G TL K A+ +G N + ++ K+K + DY F+E+MACP GC+NGGGQ I+P ++ K
Sbjct: 463 DGFTL-KAAVAHGLGNARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWK 521
Query: 413 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + + IY E+ + + +NP ++ LY+E+ +PGS KA + +HT Y
Sbjct: 522 DIRCERAKAIYEEDESLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 573
>gi|256005733|ref|ZP_05430688.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|281417062|ref|ZP_06248082.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
gi|385779219|ref|YP_005688384.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|419722023|ref|ZP_14249174.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
gi|419725349|ref|ZP_14252395.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|255990306|gb|EEU00433.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|281408464|gb|EFB38722.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
gi|316940899|gb|ADU74933.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|380771251|gb|EIC05125.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|380781956|gb|EIC11603.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
Length = 582
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 216/412 (52%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI L EK +D+ + N V++ +P R +L E FG+ P+ +
Sbjct: 191 CVNCGQCINVCPVGALREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEFGM-PIGSR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L LG K +FDT + DLT++E E I R K + LP+++S
Sbjct: 250 VTGKMVAALSRLGFKKVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +SS KSP + GA +K + QK G P +++ V++MPC K
Sbjct: 301 SPGWIKFCEHNYPEF-LDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVVSIMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + P+VD VLTT E+ +I+ ++F +L + D
Sbjct: 360 KFEAQRPEL-------------SSTGYPDVDVVLTTRELARMIKEAGIDFNSLPDKQFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G ++GG E R + L GK + +E+ +R D +E ++E+
Sbjct: 407 PMGEASGAGVIFG---ATGGVMEAAIRTVGELLSGKPAD-KIEYTEVRGLDGIKEASIEL 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
+G TL K A+ +G N + ++ K+K + DY F+E+MACP GC+NGGGQ I+P ++ K
Sbjct: 463 DGFTL-KAAVAHGLGNARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWK 521
Query: 413 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + + IY E+ + + +NP ++ LY+E+ +PGS KA + +HT Y
Sbjct: 522 DIRCERAKAIYEEDESLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 573
>gi|312622464|ref|YP_004024077.1| hydrogenase, fe-only [Caldicellulosiruptor kronotskyensis 2002]
gi|312202931|gb|ADQ46258.1| hydrogenase, Fe-only [Caldicellulosiruptor kronotskyensis 2002]
Length = 579
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 214/418 (51%), Gaps = 40/418 (9%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQAAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT DLT++E E I R K S L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTGADLTIMEEGTELINRIK---------SGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V+V
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSV 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DSHFDDPMGDATGAGVIFG---TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPK 406
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ I P
Sbjct: 457 EAEIDV-GTMKIKAAVAHGLANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPA 515
Query: 407 PGQSPKELIK-TLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ K IY E+ L +NP V+ LY+E+L+ P SEKA +HT Y
Sbjct: 516 KVKEKVDVAKLRARAIYDEDRSLPIRKSHENPAVKRLYEEFLDHPNSEKAHHILHTHY 573
>gi|268607923|ref|ZP_06141654.1| hydrogenase, Fe-only [Ruminococcus flavefaciens FD-1]
Length = 582
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 203/411 (49%), Gaps = 38/411 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI L EK E ++ I + K V++ +P RA LAE FG +P+
Sbjct: 194 CVSCGQCIAVCPVGALSEKDYTKEVMAAIADPEKTVLVQTAPAVRAGLAECFG-NPIGTN 252
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ L+ LG +FDT + DLT++E NEF+ R + + LPM++S
Sbjct: 253 AEGKMVAALRRLGFDKVFDTDFAADLTIMEEANEFVERVQ---------NGGVLPMITSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E +LP++SS KSPQQ GAT K + +K+G P I V++MPC K
Sbjct: 304 SPGWVKFCEHYY-PELLPHLSSCKSPQQMFGATAKTYYAEKMGLDPKNIVMVSIMPCTAK 362
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D +P+VD LTT E+ +I+ + F +L E D
Sbjct: 363 KFEIGRDD-------------QSAAGVPDVDYALTTRELGRMIERAGILFNSLPEEKFDD 409
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
L G ++ G++GG E R A TL G + + +R ++ + A
Sbjct: 410 PLGISTGAGVIF---GATGGVMEAALRTAVHTLTGNTV---TDLPEVRGTEGIKKATYEV 463
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G + + G N + ++ +K CD QF+E+MACP GC+NGGGQ + G
Sbjct: 464 GDLKVNVEVASGLSNAREVLESIKNGTCDAQFIEIMACPGGCVNGGGQPQVPMGVRNFVD 523
Query: 415 IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+ L N+ + P + NP ++ +Y+E+ E+PGS KA + +HT Y
Sbjct: 524 IRAERAKVLYNLDKSMPLRQSHENPAIKKVYEEFFEKPGSHKAHEVLHTSY 574
>gi|134115152|ref|XP_773874.1| hypothetical protein CNBH3260 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818340|sp|P0CP11.1|NAR1_CRYNB RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|50256502|gb|EAL19227.1| hypothetical protein CNBH3260 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 650
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 223/436 (51%), Gaps = 93/436 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTS---------------- 44
FS L I DL DF+ PSQ C++ + K A + P + + ++
Sbjct: 3 FSGALTITDLDDFLTPSQACIIPVRNNKKPAEDEGPTEIHIDSNNNYYEVSTYPSVGHDD 62
Query: 45 ----SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-------- 92
SK+ E +I+L DCLACSGCITS E++++ QS +E L I V
Sbjct: 63 DIGNSKKALEKAEINLNDCLACSGCITSTESLLITMQSQNEILEFIKTNPTVVDPESPCH 122
Query: 93 -----IISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKS--LGVKSIFDTSCSR 138
I+S+SPQ+ ASL+ + + PL V +++ FL G ++DT+ +R
Sbjct: 123 KPRLPILSISPQTLASLSAAYATASSRPPIPLLVLLRRIRAFLSQPEKGSWRVWDTTFAR 182
Query: 139 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 198
++L E+ EF R ++ ++ + +PML+SACPGW+CYAEK G +LP +S+ +
Sbjct: 183 HMSLRESVVEFHER----KDKKEKGKAAEMPMLASACPGWVCYAEKAQGD-MLPLLSAAR 237
Query: 199 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 258
S Q IGA K KL +PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 238 SSQGIIGALAKSWYGHKLQHKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR------- 290
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVNFE--------------ALEESPLDKMLTNVDDEGH 304
+VD VLTTGE LDL+ L+ + F+ A E+SP ++LT+ EG
Sbjct: 291 ----DVDCVLTTGE-LDLL-LQELGFDPHVPIANESTPSYSATEDSPFPELLTH---EG- 340
Query: 305 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKTLLKF 361
SSG Y +T+ ++ + + IR S D E ++ + G+ + K
Sbjct: 341 -----SSSGSYLQTIIHDVQRSHPNPT---RIITREIRGSTDNIEYLIQDTITGQVVFKG 392
Query: 362 ALCYGFQNLQNIVRKV 377
A YGF+NLQN+VRKV
Sbjct: 393 AKVYGFRNLQNLVRKV 408
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 386 FVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 422
FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 474 FVEVMACPGGCVNGGGQMKPTVPTPSAPEAMEVDEEGY 511
>gi|320582179|gb|EFW96397.1| nuclear architecture related protein [Ogataea parapolymorpha DL-1]
Length = 507
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 230/483 (47%), Gaps = 95/483 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-----VSLKKATFKNPDKPQVST----------SSKQQA 49
S L DL+DFI P CV + KKA + P Q+ S +
Sbjct: 1 MSAILSADDLNDFITPGVACVKPVESSNAKKADGRGPVDIQIDAQGNALEVEIDGSSSRL 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK---GKAVIISLSPQSRASLAE 106
+ +ISL DCLACSGCITSAE V++ + S E ++ + + K ++S+S QSRASLA
Sbjct: 61 QEAQISLADCLACSGCITSAEEVLVAQHSHKELINALKQDRHNKKFVMSISHQSRASLAA 120
Query: 107 HFGISPLQVFKKLT-TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
++ QV K L F+ LG S+ T R + ++ + + +++
Sbjct: 121 ALKLTIEQVDKMLIHLFVNHLGFVSVVGTGLGRVIATDTLAHDIV---------EGKQNG 171
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225
+ P+L+S CPGW+ YAEK +ILP +S+VKSPQQ G K I ++ D++YH
Sbjct: 172 AQGPVLTSICPGWVLYAEKT-HPHILPKLSTVKSPQQITGCIFKRLIGRQYSCSLDQVYH 230
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
+++MPC+DKKLEAAR + + G E P+VD V+T E++ L+Q + +N +
Sbjct: 231 LSIMPCFDKKLEAARPE-----------HETPG-EAPDVDCVITPRELIQLLQDEKINID 278
Query: 286 AL------EESPLDKMLTNV------DDEGHLYGVAG-SSGGYAETVFRHAAKTLFGKVI 332
+ + +P+ + D E G SSGGYA H K +
Sbjct: 279 KIIKEVEHDATPISHIYEQYAPRDWPDAEAAWLNCEGSSSGGYALQYLLHLQK------M 332
Query: 333 EGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK------------ 378
+ E +TI RN D E+ L + L + GF+N+QN+VRK+K
Sbjct: 333 HENTEIRTINGRNPDIYELRLVRGSEVLATAGVVNGFKNIQNLVRKLKNGSTRVSGGLAA 392
Query: 379 -------------------MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 419
+ KCD VEVMACP GC+NGGGQI + K+ ++
Sbjct: 393 RRRARMAQDAGEKQETGPEVHKCD--LVEVMACPGGCINGGGQISGPAEVASKDWVEQTR 450
Query: 420 TIY 422
+Y
Sbjct: 451 HLY 453
>gi|58271472|ref|XP_572892.1| iron hydrogenase [Cryptococcus neoformans var. neoformans JEC21]
gi|338818341|sp|P0CP10.1|NAR1_CRYNJ RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|57229151|gb|AAW45585.1| iron hydrogenase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 650
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 223/436 (51%), Gaps = 93/436 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTS---------------- 44
FS L I DL DF+ PSQ C++ + K A + P + + ++
Sbjct: 3 FSGALTITDLDDFLTPSQACIIPVRNNKKPAEDEGPTEIHIDSNNNYYEVSTYPSVGHDD 62
Query: 45 ----SKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-------- 92
SK+ E +I+L DCLACSGCITS E++++ QS +E L I V
Sbjct: 63 DIGNSKKALEKAEINLNDCLACSGCITSTESLLITMQSQNEILEFIKTNPTVVDPESPCH 122
Query: 93 -----IISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKS--LGVKSIFDTSCSR 138
I+S+SPQ+ ASL+ + + PL V +++ FL G ++DT+ +R
Sbjct: 123 KPRLPILSISPQTLASLSAAYATASSRPPIPLLVLLRRIRAFLSQPEKGSWRVWDTTFAR 182
Query: 139 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 198
++L E+ EF R ++ ++ + +PML+SACPGW+CYAEK G +LP +S+ +
Sbjct: 183 HMSLRESVVEFHER----KDKKEKGKAAEMPMLASACPGWVCYAEKAQGD-MLPLLSAAR 237
Query: 199 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 258
S Q IGA K KL +PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 238 SSQGIIGALAKSWYGHKLQHKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR------- 290
Query: 259 LEIPEVDSVLTTGEVLDLIQLKAVNFE--------------ALEESPLDKMLTNVDDEGH 304
+VD VLTTGE LDL+ L+ + F+ A E+SP ++LT+ EG
Sbjct: 291 ----DVDCVLTTGE-LDLL-LQELGFDPHVPIANESTPSYSATEDSPFPELLTH---EG- 340
Query: 305 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKTLLKF 361
SSG Y +T+ ++ + + IR S D E ++ + G+ + K
Sbjct: 341 -----SSSGSYLQTIIHDVQRSHPNPT---RIITREIRGSTDNIEYLIQDTITGQIVFKG 392
Query: 362 ALCYGFQNLQNIVRKV 377
A YGF+NLQN+VRKV
Sbjct: 393 AKVYGFRNLQNLVRKV 408
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 386 FVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 422
FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 474 FVEVMACPGGCVNGGGQMKPTVPTPSAPEAMEVDEEGY 511
>gi|302387722|ref|YP_003823544.1| hydrogenase, Fe-only [Clostridium saccharolyticum WM1]
gi|302198350|gb|ADL05921.1| hydrogenase, Fe-only [Clostridium saccharolyticum WM1]
Length = 581
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 140/416 (33%), Positives = 215/416 (51%), Gaps = 46/416 (11%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK S+DE + I ++ K VI+ +P RA L E FG P+
Sbjct: 191 CVSCGQCIAVCPTGALYEKSSIDEVAAAIADRSKHVIVQTAPAVRAGLGEEFGY-PIGTN 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT+ S DLT++E +EFI R + + LPM++S
Sbjct: 250 VEGKMAAALRRLGFDKVFDTNFSADLTIMEEAHEFIDRVQ---------NGGVLPMITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GA K + +K+G +P++I V+VMPC K
Sbjct: 301 SPGWIKYCEHYFPD-MTENLSSCKSPQQMFGAIAKSYYAEKMGLKPEDIVSVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D + P+VD +TT E+ +I+ + F L + D
Sbjct: 360 KFEIGRDD-------------QDANGSPDVDYSMTTRELARMIKQAGIRFTELPDEDFDT 406
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVA 350
L G G A G++GG E R A ++L G+ +E EF +R + +E +
Sbjct: 407 PL------GLGTGAAVIFGATGGVMEAALRTAVESLTGEELE-KPEFTDVRGTKGIKEAS 459
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + A+ G N + ++ +VK + +Y F+E+M CP GC+NGGGQ + +PG
Sbjct: 460 YRV-GDMDVNVAVASGLGNARELLNRVKSGEANYHFIEIMGCPGGCVNGGGQPQ-QPGYV 517
Query: 411 PKEL-IKTL--ETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I++L + +Y E+ + +NP ++ LY+ +L +PGSEKA +HT Y
Sbjct: 518 RNTTDIRSLRAKVLYDEDAAKTIRKSHENPAIKELYETFLGEPGSEKAHHLLHTTY 573
>gi|225569030|ref|ZP_03778055.1| hypothetical protein CLOHYLEM_05109 [Clostridium hylemonae DSM
15053]
gi|225161829|gb|EEG74448.1| hypothetical protein CLOHYLEM_05109 [Clostridium hylemonae DSM
15053]
Length = 583
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 205/415 (49%), Gaps = 44/415 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK + L I + K V++ +P RA L E FG P+
Sbjct: 195 CVSCGQCIAVCPTGALYEKDYTQQILDAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTD 253
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G +FDT + DLT++E E + R K + LP+++S
Sbjct: 254 VEGKMAAALRRVGFDKVFDTDWAADLTIMEEATELLDRVK---------NGGVLPLITSC 304
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + ++SS KSPQQ GA +K + +K G P +I V+VMPC K
Sbjct: 305 SPGWIKYCEHYFPD-MTEHLSSCKSPQQMFGAMLKTYFAEKEGIDPKKIVSVSVMPCTAK 363
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D + +P+VD +TT E+ LI+ + F L + D
Sbjct: 364 KFEIGRDD-------------QDAAGVPDVDIAITTRELARLIKRCGIEFTVLPDEKFD- 409
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
D G G A G++GG E R A + L G+ + +L+F +R ++ +E +
Sbjct: 410 -----DPMGESTGAAVIFGATGGVMEAALRTAVEVLTGEEL-ANLDFTDVRGTEGVKEAS 463
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + DY F+E+M CP GC+NGGGQ +
Sbjct: 464 YNVAGMDV-KVAVASGLNNARTLLNKVKSGEADYHFIEIMGCPGGCVNGGGQPQVSGDVR 522
Query: 411 PKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L N A P + NP ++ LYDE+L +PGS KA + +HT Y
Sbjct: 523 NFTDVRGIRASVLYNNDAAKPIRKSHENPAIKKLYDEYLGEPGSHKAHETLHTSY 577
>gi|374295698|ref|YP_005045889.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
gi|359825192|gb|AEV67965.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
Length = 591
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 219/412 (53%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C C CI L EK D+ + N VI+ +P R +L E FG+ P+ +
Sbjct: 200 CTMCGQCINVCPVGALREKDDTDKVWEALANPELHVIVQTAPAVRVALGEEFGM-PIGSR 258
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V + LK LG +FDT + DLT++E E I R K + LP+++S
Sbjct: 259 VTGNMIAALKLLGFDRVFDTDTAADLTIMEEGTEVINRIK---------NGGKLPVITSC 309
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +S+ KSP + GA +K + +K G P +++ V++MPC K
Sbjct: 310 SPGWIKFCEHYYPEF-LDNLSTCKSPHEMFGAILKSYYAEKEGIDPSKVFVVSIMPCTAK 368
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR + P+VD VLTT E+ +I+ ++F+ + E D
Sbjct: 369 KFEAARPELAAN-------------GYPDVDVVLTTRELARMIKEAGIDFKNVYEEHFDD 415
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ + G ++G ++GG E R A+ L G+ I+ +++++ +R + +E +++V
Sbjct: 416 PMGDASGAGVIFG---ATGGVMEAALRTVAEILSGQPID-NVDYEQVRGVEGIKEASVKV 471
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
G LK A+ +G N + ++ ++K + +Y FVE+MACP GC+NGGGQ I+P +S
Sbjct: 472 -GDLTLKAAVAHGLGNARKLLDRIKAGEAEYHFVEIMACPGGCVNGGGQPIQPSKVRSWT 530
Query: 413 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+L + + IY E+ + + +NP +++LY+E+LEQPGS KA K +HT Y
Sbjct: 531 DLRTERAKAIYEEDKELPIRKSHENPRIKALYEEYLEQPGSHKAHKLLHTHY 582
>gi|294872512|ref|XP_002766308.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239867065|gb|EEQ99025.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 472
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 217/462 (46%), Gaps = 92/462 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPD-------KPQVSTSSK-------QQAE 50
FS +++ DL DFI+PS CV+ L A K+ +PQ+ S K Q A
Sbjct: 4 FSGVVKLADLDDFISPSTECVIPLAGALEKSKHEEATGEVRPQLIRSKKAEEKTTGQTAT 63
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA----------VIISLSPQS 100
++SL DCLACSGC+TSAET++L +QS D L + + V++S++ S
Sbjct: 64 IAQVSLSDCLACSGCVTSAETILLTEQSTDALLQRLGAKSSDSSEEALPAEVVVSVTGPS 123
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVK------------SIFDTSCSRDLTLIEACNE 148
R SL+++F ISP +V L L+ L +K S +TS S + L+
Sbjct: 124 RTSLSQYFNISPEKVAPALGEALRQLELKLQEKDDINLPRISCLNTSVSEAVALV----- 178
Query: 149 FIARYKQSQESDDERSNSSLP--MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 206
+ R + + DD P L+S CPGW CYAEK L + + +S+V+S +Q G
Sbjct: 179 -LTREEAKRRKDDAERKGLPPKAFLTSHCPGWTCYAEKSLDADTVELLSNVRSAEQIQGL 237
Query: 207 TIKH---HICQKLGFRP-------------------DEIYHVTVMPCYDKKLEAAREDFV 244
+K H Q + +R IYHV V PC+D+KLE R ++
Sbjct: 238 YVKSVIPHFRQIVAYRGFWDTYLSRIMLPKSSSSSLRRIYHVLVSPCFDRKLEVLRPNYR 297
Query: 245 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKMLTNVDDEG 303
+ S D +P +D VL T E++ L++ ++ + P + +L
Sbjct: 298 IKSAS------DSTDGVPSIDLVLGTSEIVSLLKNYDLHLSKFTNAEPTNDLLMCGSRCF 351
Query: 304 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFAL 363
+G + GGYA + A ++ +++N D + K A
Sbjct: 352 VPFGDSSECGGYARGELQVAEDP----------KWISVKNQDLTHIG---------KVAR 392
Query: 364 CYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
YGF+N+QNIVRKV R DY FVEVMACP GC NGG Q+ P
Sbjct: 393 AYGFRNVQNIVRKVNKRGFDYDFVEVMACPGGCGNGGAQVIP 434
>gi|226290159|gb|EEH45643.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides brasiliensis Pb18]
Length = 629
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 164/495 (33%), Positives = 230/495 (46%), Gaps = 101/495 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKP-QVSTSSKQQA---EPVKISLK 57
S L DL+DFI+P C V +L + KN + +V+T K QA +ISL
Sbjct: 1 MSAILSSDDLNDFISPGVACIKPVETLPEEDSKNQENAYEVTTEDKIQAGNPPAAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHSEVLKTLDSCPELQIHNQKICGSQSSRPDVPCSAEGQT 120
Query: 89 ----GKAVII-SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIF 132
G+ + I S+SPQ RASLA FGIS + + FL G +
Sbjct: 121 CSADGRKIFIASVSPQVRASLAATFGISERKAGYLIEQFLSGPQGLRAGGAHGSGFTWVV 180
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQE--SDDERSNSSLPMLSSACPGWICYAEKQLGSYI 190
DT+ R++ L E + S S +E P+LSS CPGWICYAEK ++
Sbjct: 181 DTNVMRNVCLELGVTEVKESLEISGNTISGEEFPVPKRPILSSICPGWICYAEKT-HPHV 239
Query: 191 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 250
LP++S +KSPQ G +K + + L P I+H+ +MPC+DKKLEA+R++ Q
Sbjct: 240 LPHMSRIKSPQALTGTLLKSVLRKALNISPCHIWHLAIMPCFDKKLEASRQELT-NASWQ 298
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD---EGHLY 306
++ + + +VD V+T+ E+L L + ++ L PL +T D E L+
Sbjct: 299 GLSWTESHTPVRDVDCVITSRELLMLATSRNISLLNLPMKPLPPSSITPFPDTYLERFLF 358
Query: 307 ---------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GK 356
AG SGGY H T + H++ + RNSD E AL G
Sbjct: 359 PKSLPHAQCPAAGPSGGY----LYHILTTYQRRNPGSHIQTQRGRNSDVIEYALTSNSGD 414
Query: 357 TLLKFALCYGFQNLQNIVRKVK--------------MRK-------------CDYQFVEV 389
T++K A YGF+N+QN+VRK+K RK DY ++EV
Sbjct: 415 TIIKAARYYGFRNIQNLVRKLKPPRTSRLPGAKPIIARKAAGAGSAAGNASVTDYSYIEV 474
Query: 390 MACPSGCLNGGGQIK 404
MACP GC NGGGQI+
Sbjct: 475 MACPGGCTNGGGQIR 489
>gi|225682723|gb|EEH21007.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides brasiliensis Pb03]
Length = 629
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 164/495 (33%), Positives = 230/495 (46%), Gaps = 101/495 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKP-QVSTSSKQQA---EPVKISLK 57
S L DL+DFI+P C V +L + KN + +V+T K QA +ISL
Sbjct: 1 MSAILSSDDLNDFISPGVACIKPVETLPEEDSKNQENAYEVTTEDKIQAGNPPAAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHSEVLKTLDSCPELQIHNQKKCGSQSSRPDVPCSAEGQT 120
Query: 89 ----GKAVII-SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIF 132
G+ + I S+SPQ RASLA FGIS + + FL G +
Sbjct: 121 CSADGRKIFIASVSPQVRASLAATFGISERKAGYLIEQFLSGPQGLRAGGAHGSGFTWVV 180
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQE--SDDERSNSSLPMLSSACPGWICYAEKQLGSYI 190
DT+ R++ L E + S S +E P+LSS CPGWICYAEK ++
Sbjct: 181 DTNVMRNVCLELGVTEVKESLEISGNTISGEEFPVPKRPILSSICPGWICYAEKT-HPHV 239
Query: 191 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 250
LP++S +KSPQ G +K + + L P I+H+ +MPC+DKKLEA+R++ Q
Sbjct: 240 LPHMSRIKSPQALTGTLLKSVLRKALNISPCHIWHLAIMPCFDKKLEASRQELT-NASWQ 298
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD---EGHLY 306
++ + + +VD V+T+ E+L L + ++ L PL +T D E L+
Sbjct: 299 GLSWTESHTPVRDVDCVITSRELLMLATSRNISLLNLPMKPLPPSSITPFPDTYLERFLF 358
Query: 307 ---------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GK 356
AG SGGY H T + H++ + RNSD E AL G
Sbjct: 359 PKSLPHAQCPAAGPSGGY----LYHILTTYQRRNPGSHIQTQRGRNSDVIEYALTSNSGD 414
Query: 357 TLLKFALCYGFQNLQNIVRKVK--------------MRK-------------CDYQFVEV 389
T++K A YGF+N+QN+VRK+K RK DY ++EV
Sbjct: 415 TIIKAARYYGFRNIQNLVRKLKPPRTSRLPGAKPIIARKAAGAGSAAGNASVTDYSYIEV 474
Query: 390 MACPSGCLNGGGQIK 404
MACP GC NGGGQI+
Sbjct: 475 MACPGGCTNGGGQIR 489
>gi|256004229|ref|ZP_05429212.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|385777924|ref|YP_005687089.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|419721959|ref|ZP_14249111.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
gi|419727017|ref|ZP_14254027.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|255991819|gb|EEU01918.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|316939604|gb|ADU73638.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|380769603|gb|EIC03513.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|380781998|gb|EIC11644.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
Length = 1149
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 220/417 (52%), Gaps = 46/417 (11%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQV 115
DC++C C+T+ L+ ++ + + IN K ++ ++P R+ ++ FG+S +
Sbjct: 671 DCVSCGQCVTACPCAALDYRRERGKVVRAINDPKKTVVGFVAPAVRSLISNTFGVSYEEA 730
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ LK LG +FD + + DLT++E EF++R + + +P +S C
Sbjct: 731 SPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEFLSRIQ---------NKGVMPQFTSCC 781
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + EK+ I+P++S+ KSPQ +GAT+K+H + +G ++++ V+++PC KK
Sbjct: 782 PGWINFVEKRYPE-IIPHLSTCKSPQMMMGATVKNHYAKLMGINKEDLFVVSIVPCLAKK 840
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F+ I +VD+VLTT E+L++++L + + D+
Sbjct: 841 YEAARPEFIHD-------------GIRDVDAVLTTTEMLEMMELADIKPSEVVPQEFDEP 887
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
V G L+ G+SGG AE R A + L GKV+ HLEF+ IR + +E ++V
Sbjct: 888 YKQVSGAGILF---GASGGVAEAALRMAVEKLTGKVLTDHLEFEEIRGFEGVKESTIDVN 944
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G T ++ A+ G +N + I+ K+ + D Y +EVMACP GC+ G G P
Sbjct: 945 G-TKVRVAVVSGLKNAEPIIEKI-LNGVDVGYDLIEVMACPGGCICGAGHPVP------- 995
Query: 413 ELIKTLETI--YLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
E I +LE L N+ ++ NP + LY+E+ +P S A + +HT Y P
Sbjct: 996 EKIDSLEKRQQVLVNIDKVSKYRKSQENPDILRLYNEFYGEPNSPLAHELLHTHYTP 1052
>gi|222529290|ref|YP_002573172.1| hydrogenase, Fe-only [Caldicellulosiruptor bescii DSM 6725]
gi|222456137|gb|ACM60399.1| hydrogenase, Fe-only [Caldicellulosiruptor bescii DSM 6725]
Length = 579
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 214/418 (51%), Gaps = 40/418 (9%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQAAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT DLT++E E I R K + L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTGADLTIMEEGTELINRIK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V+V
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSV 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DSHFDDPMGDATGAGVIFG---TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPK 406
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ I P
Sbjct: 457 EAEIDV-GTMKIKAAVAHGLANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPA 515
Query: 407 PGQSPKELIK-TLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ K IY E+ L +NP V+ LY+E+L+ P SEKA +HT Y
Sbjct: 516 KVKEKVDVAKLRASAIYDEDRSLPIRKSHENPAVKRLYEEFLDHPNSEKAHHILHTHY 573
>gi|300121909|emb|CBK22483.2| unnamed protein product [Blastocystis hominis]
Length = 543
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 243/497 (48%), Gaps = 119/497 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL-KKATFKNPDKPQV------------STSSKQQ--- 48
FS T+ +G+L DFIAP+Q C + AT + K Q+ +TSS Q
Sbjct: 4 FSGTVLLGELDDFIAPAQACSTGVFGDATSTSGGKMQLVMEDDLGDDYGSATSSVIQTNV 63
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSR---ASLA 105
A+ +SL DCLAC+GC+TSAETV++++QSL FL + K KA + ++ SR SLA
Sbjct: 64 AKVASVSLADCLACTGCVTSAETVLIQQQSLQTFLDEL-KAKAHKLYVAIVSRPSCVSLA 122
Query: 106 EHFGISPLQVFKKLTTFLKSLGVKSI-----------------FDTS------------- 135
GI + F+++ + L S GV + FD
Sbjct: 123 NKLGIPIDEAFERIRSVLYSHGVSVVVRQDLGEVIAMLESITEFDHRRRSTSSPSSISQD 182
Query: 136 -------------------CSRDLTLIEACNEFIARYKQSQESDDERSNSSL----PMLS 172
S D+ + + N+ +E S+ S+ P ++
Sbjct: 183 PSYAIDSTRSVYPKEGQLFSSLDIEHLSSTNDHYTLLSNPSYFQNESSHPSITANHPFIT 242
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHI--CQKLGFRPDEIYHVTVMP 230
S CPGW+CYAEK+ + ++P++S+ KS QQ +G+ ++ + + +IY +V+
Sbjct: 243 SNCPGWVCYAEKKTHA-LVPFLSTTKSAQQIMGSLLRKMLPTLTNEPIQSQDIYIASVVS 301
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN------- 283
CYD+KLEA+R DF+ + I E+D VL T E+ +L++ A +
Sbjct: 302 CYDRKLEASRRDFM------------DPAGIHEIDCVLATQEIAELLEKPAPSAPSAPVR 349
Query: 284 -------FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF------RHAAKTLFGK 330
+EA+E T DD V SSGG +++ R AA+ +F
Sbjct: 350 VWWDEKRWEAMESG----CRTAFDD------VLMSSGGVLQSLLKFELLSRPAARLVFAL 399
Query: 331 VIEGHLE-FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
+E ++ +T+RNSDF E ++ V + + + A YGF+N+QN+ K+K KC Y VEV
Sbjct: 400 FVENSMKRTRTVRNSDFVESSVCVGEEIVFRGAFIYGFRNIQNLAMKIKRGKCVYDAVEV 459
Query: 390 MACPSGCLNGGGQIKPK 406
MACPSGCLNGGGQI+P+
Sbjct: 460 MACPSGCLNGGGQIRPE 476
>gi|210616162|ref|ZP_03290965.1| hypothetical protein CLONEX_03184 [Clostridium nexile DSM 1787]
gi|210149924|gb|EEA80933.1| hypothetical protein CLONEX_03184 [Clostridium nexile DSM 1787]
Length = 594
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 207/414 (50%), Gaps = 42/414 (10%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L EK +DE L I + K V++ +P RA+L E FG P+
Sbjct: 204 CVSCGQCIAVCPTGALQEKDYIDEVLEAIADPEKHVVVQTAPSVRAALGEEFGY-PIGTD 262
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V ++ L+ +G +FDT S DLT++E EFI R + + LP+++S
Sbjct: 263 VEGRMVAALRRIGFDKVFDTDFSADLTIMEEAREFIDRVQ---------NGGVLPLITSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GA K + +K G P +I V+VMPC K
Sbjct: 314 SPGWIKYCEHYFPD-MTENLSSCKSPQQMFGAITKTYYAEKTGMDPKDIVCVSVMPCTAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RED +P+VD +TT E+ LI+ ++F L E D
Sbjct: 373 KFEIGRED-------------QNAAGVPDVDIAITTRELARLIKRTGLDFTGLPEENFDD 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L ++G ++GG E R A +TL G+ + ++F+ +R +D +E V
Sbjct: 420 PLGESTGAAVIFG---TTGGVMEAALRTAVETLTGEEL-AKVDFEDVRGTDGIKEATYNV 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + K A+ G QN + ++ KV + DY F+E+M CP GC+NGGGQ P+ +
Sbjct: 476 AGMDV-KVAVASGLQNAKELLDKVNAGEADYHFIEIMGCPGGCVNGGGQ--PQVSADVRN 532
Query: 414 LIKT----LETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +Y + A +NP ++ LY+E+L +PGS+KA + +HT Y
Sbjct: 533 FTDVRAARAKVLYDNDAKKAIRKSHENPSIQKLYEEFLGRPGSQKAHEILHTSY 586
>gi|409386319|ref|ZP_11238741.1| Periplasmic [Fe] hydrogenase large subunit [Lactococcus
raffinolactis 4877]
gi|399206417|emb|CCK19656.1| Periplasmic [Fe] hydrogenase large subunit [Lactococcus
raffinolactis 4877]
Length = 456
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 212/413 (51%), Gaps = 36/413 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
DC++C CI +T + EK E + + + K V++ +P R +L E F +
Sbjct: 65 DCISCGQCIVVCQTGAIAEKDQTQEVWAALQDPSKHVVVQTAPSVRVTLGEAFQLPVGTN 124
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L +G +FDT+ + D T++E EF+ R + +N PM +S
Sbjct: 125 VEGKMVAALCRIGFDRVFDTNVAADFTIMEEATEFLQRVE---------NNGPFPMFTSC 175
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E ++P +SS KSPQQ GA IK QK P +I+ V +MPC K
Sbjct: 176 SPGWVKYCEA-YHPELIPNLSSCKSPQQMFGALIKTWYAQKNNIEPKDIFVVGIMPCTAK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+ +VD LTT E+ +I + F L + D+
Sbjct: 235 KFEVTREN-------------QAAAGFTDVDIALTTRELARMIDKVGIRFNELPDETFDQ 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEV 353
L + G+++ G++GG E R A++TL G +E ++F+ +R + +E E+
Sbjct: 282 PLGDATGAGYIF---GATGGVMEAALRTASETLAGHALEA-VDFEEVRGTKGIKEATYEM 337
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
G+T +K A+ G N + ++ +++ + Y FVE+MACP GC+NGGGQ ++P ++
Sbjct: 338 SGQT-VKVAVASGINNAKRLIEQIEKGEAFYHFVEIMACPGGCVNGGGQPVQPGSVRNFV 396
Query: 413 EL-IKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+L K + +Y+E+ L +NP+++ +Y E+LE+PGS KA +HT +
Sbjct: 397 DLQSKRAQALYVEDRGKGLRRSHENPVLQRIYQEFLEKPGSHKAHHILHTSFQ 449
>gi|366166522|ref|ZP_09466277.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
Length = 582
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 217/412 (52%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C C CI L EK D+ S + N V++ +P R +L E FG+ P+ +
Sbjct: 191 CTICGQCINVCPVGALKEKDDTDKVWSALANPDLHVVVQTAPAVRVALGEEFGM-PIGSR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V + L+ LG +FDT + DLT++E E I R K + LP+++S
Sbjct: 250 VTSNMVAALRRLGFSKVFDTDTAADLTIMEEGTEVINRIK---------NGGKLPVITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +S+ KSP + GA +K + QK G P +++ V++MPC K
Sbjct: 301 SPGWIKFCEHNYPEF-LENLSTCKSPHEMFGAVLKSYYAQKEGIDPAKVFVVSIMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR + Y D VD VLTT E+ +I+ ++F + E D
Sbjct: 360 KFEAARPELAAT------GYAD-------VDVVLTTRELARMIKEAGIDFTNVSEEHFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ + G ++G ++GG E R A+ L G+ IE ++E++ +R + +E +++V
Sbjct: 407 PMGDASGAGVIFG---ATGGVMEAALRTVAEVLSGQSIE-NVEYEQVRGVEGIKEASVKV 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
G LK A+ +G N + ++ K+K + DY FVE+MACP GC+NGGGQ I+P +S
Sbjct: 463 -GDLTLKAAVAHGLGNARKLLDKIKAGEADYHFVEIMACPGGCVNGGGQPIQPSNVRSWT 521
Query: 413 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+L + + IY E+ + + +NP V++LY+E+L +PG K+ + +HT Y
Sbjct: 522 DLRTERAKAIYEEDRELPIRKSHENPKVKALYEEYLGEPGGHKSHELLHTHY 573
>gi|332671079|ref|YP_004454087.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484]
gi|332340117|gb|AEE46700.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484]
Length = 1088
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 210/421 (49%), Gaps = 47/421 (11%)
Query: 54 ISLKDCLACSGCITSAETVMLE--KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
+ L DC++C C+ + L+ ++ F + + K V+ ++P R+ +A+H+G++
Sbjct: 669 LGLTDCVSCGQCVRACPCGALDYVRERGGVFSAMHDPDKVVVGFVAPAVRSVIADHYGLA 728
Query: 112 PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
P Q + ++ +G +FD + + DLT++E EF+ R S LP
Sbjct: 729 PEQASGFMAGLMRKVGFDRVFDFAFAADLTILEETTEFLERVG---------SGERLPQF 779
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+S CPGW+ E++ ++P++SS KSPQQ +GAT+K H ++ G D +Y V+V+PC
Sbjct: 780 TSCCPGWVNLVERRF-PELIPHLSSCKSPQQMMGATVKRHFAERAGIPVDRLYTVSVVPC 838
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EAAR +F + RD VD+VLTT E+L+++++ ++ +E
Sbjct: 839 LAKKYEAARPEFA------PDGVRD-------VDAVLTTTELLEMVEMLRLDPADVEPGA 885
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 351
D+ V G L+ G+SGG AE R A + L G+ L+ +R + + A
Sbjct: 886 FDEPYAQVSGAGVLF---GASGGVAEAALRMAVEKLTGE-PPAELDVHAVRGLEGVKEAT 941
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVK-MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
G ++ A+ G N+ + R+++ Y +EVMACP GC+NG G P+
Sbjct: 942 VAAGGVEVRVAVVSGLGNVDALARRIRDGEDVGYDLIEVMACPGGCVNGAGHPAPRDAH- 1000
Query: 411 PKELIKTLETIYLENVML----ADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
ET+ + V++ P + NP V LYDE +P S A + +HT Y
Sbjct: 1001 --------ETVARQQVLVDIDRTAPLRRSQANPDVLRLYDECYGEPNSPLAHELLHTSYA 1052
Query: 463 P 463
P
Sbjct: 1053 P 1053
>gi|302871900|ref|YP_003840536.1| hydrogenase, Fe-only [Caldicellulosiruptor obsidiansis OB47]
gi|302574759|gb|ADL42550.1| hydrogenase, Fe-only [Caldicellulosiruptor obsidiansis OB47]
Length = 579
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/420 (33%), Positives = 215/420 (51%), Gaps = 44/420 (10%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT + DLT++E E I R K + L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTAADLTIMEEGTELINRIK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V+V
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSV 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DSHFDDPMGDATGAGVIFG---TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGFEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ P
Sbjct: 457 EAEIDV-GSMKIKAAVAHGLSNAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQ--PIV 513
Query: 408 GQSPKELIKTLE----TIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
KE + + IY E+ +++ +NP V+ LY+E+L P SEKA +HT Y
Sbjct: 514 HAKVKEKVDVAKLRASAIYDEDRSLVIRKSHENPTVKRLYEEFLGHPNSEKAHHILHTHY 573
>gi|125975482|ref|YP_001039392.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125715707|gb|ABN54199.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 644
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 220/417 (52%), Gaps = 46/417 (11%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQV 115
DC++C C+T+ L+ ++ + + IN K ++ ++P R+ ++ FG+S +
Sbjct: 166 DCVSCGQCVTACPCAALDYRRERGKVVRAINDPKKTVVGFVAPAVRSLISNTFGVSYEEA 225
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ LK LG +FD + + DLT++E EF++R + + +P +S C
Sbjct: 226 SPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEFLSRIQ---------NKGVMPQFTSCC 276
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + EK+ I+P++S+ KSPQ +GAT+K+H + +G ++++ V+++PC KK
Sbjct: 277 PGWINFVEKRYPE-IIPHLSTCKSPQMMMGATVKNHYAKLMGINKEDLFVVSIVPCLAKK 335
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F+ I +VD+VLTT E+L++++L + + D+
Sbjct: 336 YEAARPEFIHD-------------GIRDVDAVLTTTEMLEMMELADIKPSEVVPQEFDEP 382
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
V G L+ G+SGG AE R A + L GKV+ HLEF+ IR + +E ++V
Sbjct: 383 YKQVSGAGILF---GASGGVAEAALRMAVEKLTGKVLTDHLEFEEIRGFEGVKESTIDVN 439
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G T ++ A+ G +N + I+ K+ + D Y +EVMACP GC+ G G P
Sbjct: 440 G-TKVRVAVVSGLKNAEPIIEKI-LNGVDVGYDLIEVMACPGGCICGAGHPVP------- 490
Query: 413 ELIKTLETI--YLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
E I +LE L N+ ++ NP + LY+E+ +P S A + +HT Y P
Sbjct: 491 EKIDSLEKRQQVLVNIDKVSKYRKSQENPDILRLYNEFYGEPNSPLAHELLHTHYTP 547
>gi|312135115|ref|YP_004002453.1| hydrogenase, fe-only [Caldicellulosiruptor owensensis OL]
gi|311775166|gb|ADQ04653.1| hydrogenase, Fe-only [Caldicellulosiruptor owensensis OL]
Length = 579
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 215/420 (51%), Gaps = 44/420 (10%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT + DLT++E E I R K + L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTAADLTIMEEGTELINRIK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V+V
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSV 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D+ + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DSHFDEPMGDATGAGVIFG---TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ P
Sbjct: 457 EAEIDV-GSMKIKAAVAHGLANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQ--PIV 513
Query: 408 GQSPKELIKTLE----TIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
KE + + IY E+ L +NP V+ LY+E+L+ P SEKA +HT Y
Sbjct: 514 HAKIKEKVDVAKLRASAIYDEDRSLPIRKSHENPTVKRLYEEFLDHPNSEKAHHILHTHY 573
>gi|355674710|ref|ZP_09059704.1| hypothetical protein HMPREF9469_02741 [Clostridium citroniae
WAL-17108]
gi|354813811|gb|EHE98416.1| hypothetical protein HMPREF9469_02741 [Clostridium citroniae
WAL-17108]
Length = 596
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 215/429 (50%), Gaps = 48/429 (11%)
Query: 59 CLACSGCITSAETVMLEKQSL--DEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L ++ D F + + K VI+ +P RA L E FG+ P+
Sbjct: 191 CVSCGQCIAVCPTGALTEKDYTGDVFAAIADPAKHVIVQTAPAVRAGLGEEFGL-PIGTD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT+ S DLT++E +EF+ R + + LP+++S
Sbjct: 250 VEGKMAAALRRLGFDKVFDTNFSADLTIMEEAHEFLDRVQ---------NGGVLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E + +SS KSPQQ GA K + +K G P I V+VMPC K
Sbjct: 301 SPGWVKYCEHYFPD-MTENLSSCKSPQQMFGAIAKSYYAEKAGIDPKNIVSVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D + +P+VD +TT E+ +I+ + F L + D
Sbjct: 360 KFEIGRDD-------------QDANGVPDVDISITTRELARMIKKSGIRFLDLPDEKFD- 405
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVA 350
D G G A G++GG E R A +TL G+ + L+F+ +R + +E
Sbjct: 406 -----DPLGLGTGAAVIFGATGGVMEAALRTAVETLTGEELP-KLDFEEVRGTKGIKEAT 459
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + DY F+E+M CP GC+NGGGQ + +PG
Sbjct: 460 YNVAGMDV-KVAVASGLGNAKELLEKVKSGEADYHFIEIMGCPGGCVNGGGQPQ-QPGYV 517
Query: 411 PKEL-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
I+ L L N+ A+P + NP ++ LY +L +PGSE+A +HT Y V
Sbjct: 518 RNTTDIRGLRAKVLYNIDSANPIRKSHENPAIKELYSTYLGEPGSERAHHLLHTTY--VK 575
Query: 466 KSITAQLHN 474
++I ++ N
Sbjct: 576 RTINKKIVN 584
>gi|171687247|ref|XP_001908564.1| hypothetical protein [Podospora anserina S mat+]
gi|170943585|emb|CAP69237.1| unnamed protein product [Podospora anserina S mat+]
Length = 591
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 163/494 (32%), Positives = 230/494 (46%), Gaps = 111/494 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVS-------------TSSKQQAEP 51
S L DL+DFI+P C+ ++ T PQ S S+ Q A P
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIE--TLPTAPPPQASESLEFEVILDGQQPSASQPAGP 58
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG---------------------- 89
+ISL DCLACSGC+TSAE V++ QS +E LS ++
Sbjct: 59 AQISLTDCLACSGCVTSAEAVLVSLQSHNEVLSLLDSAPSLALSQDGTTITTNLDGNPSS 118
Query: 90 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLK--SLGVKS----------IFDTS 135
K + S+SPQ ASLA G + Q +T L SLG+ S I T+
Sbjct: 119 KLFVCSVSPQVLASLAAAIGNNTTQSQAANMITHLLSNPSLGLPSGGRHNNGFTYIVPTN 178
Query: 136 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 195
+R+ +L+ +E I S S+D + P+L+S+CPGW+CYAEK Y+LPY+S
Sbjct: 179 RAREASLVLGADEVI-----SSSSNDIKK----PVLTSSCPGWVCYAEKTH-PYVLPYLS 228
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQEE 252
VKSPQ G +K + + L PD I+H+++MPC+DKKLEA+RE D V+ S
Sbjct: 229 KVKSPQALTGTLLKTTLSKTLNISPDRIWHLSIMPCFDKKLEASREELTDAVWNNTSNNP 288
Query: 253 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF----------------EALEESPLDKML 296
I +VD V+TT E+L L + + +NF +A+ + L
Sbjct: 289 ATTATQKGIRDVDCVITTKEILMLAESRNINFFSLPTTPLPQTTPFPHKAMGDFLLPFSA 348
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEG 355
+E AG+SGG + TL + L RN+D E + L G
Sbjct: 349 PGKKNEQQSLS-AGTSGGNLHYILH----TLLSQNPGSTLTTTRGRNADVIEYSILSSSG 403
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRK-------------------------CDYQFVEVM 390
+ + K A YGF+N+QN+VRK+K + D+ +VEVM
Sbjct: 404 EQIFKAARYYGFRNIQNLVRKLKPARPPRMPGGKPFGSARRPGKAAGATNALDFSYVEVM 463
Query: 391 ACPSGCLNGGGQIK 404
ACP GC NGGGQ+K
Sbjct: 464 ACPGGCTNGGGQLK 477
>gi|4927278|gb|AAD33071.1| hydrogenase-1 [Clostridium thermocellum]
Length = 579
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 215/412 (52%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI L EK +D+ + N V++ +P R +L E FG+ P+ +
Sbjct: 189 CVNCGQCINVCPVGALREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEFGM-PIGSR 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L LG K +FDT + DLT++E E I R K + LP+++S
Sbjct: 248 VTGKMVAALSRLGFKKVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSC 298
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +SS KSP + GA +K + QK G P +++ ++MPC K
Sbjct: 299 SPGWIKFCEHNYPEF-LDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVGSIMPCTAK 357
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + P+VD VLTT E+ +I+ ++F +L + D
Sbjct: 358 KFEAQRPEL-------------SSTGYPDVDVVLTTRELARMIKETGIDFNSLPDKQFDD 404
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G ++GG E R + L GK + +E+ +R D +E ++E+
Sbjct: 405 PMGEASGAGVIFG---ATGGVMEAAIRTVGELLSGKPAD-KIEYTEVRGLDGIKEASIEL 460
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
+G TL K A+ +G N + ++ K+K + DY F+E+MACP GC+NGGGQ I+P ++ K
Sbjct: 461 DGFTL-KAAVAHGLGNARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWK 519
Query: 413 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + + IY E+ + + +NP ++ LY+E+ +PGS KA + +HT Y
Sbjct: 520 DIRCERAKAIYEEDESLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 571
>gi|296425093|ref|XP_002842078.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638335|emb|CAZ86269.1| unnamed protein product [Tuber melanosporum]
Length = 514
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 156/520 (30%), Positives = 238/520 (45%), Gaps = 74/520 (14%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVS-------TSSKQQAEPVKISLK 57
S L DL+DFI+P C+ ++ P S + P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPAAPNPPPANSYEVILEDKAPPTDLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQV 115
DCLACSGC+TSAE V++ QS +E L+N+N K + +SPQS+ASLA +G+S
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHNEVLANLNAHPKKLFVALISPQSKASLATAYGVSADVA 120
Query: 116 FKKLTTFL--------KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
+ L + G + DT+ +R++ + A E + + ++ + R
Sbjct: 121 GHMIERLLCSPEGICREGRGFDLVLDTNATREVAVRCAAEEVVMAMQGGKDGVNGRK--- 177
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
+P+L+SACPG++CY E + I P++S +KSPQ +G +K + + + IY V
Sbjct: 178 MPILTSACPGFVCYLESTQPALI-PHLSRLKSPQAILGTAVKSLLHKDVEDGVKGIYVVG 236
Query: 228 VMPCYDKKLEAAREDFV--FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
VMPC+DKKLE AR + ++ + E RD VD V+TT E++ L Q + V+F
Sbjct: 237 VMPCFDKKLEGARGELTSGAWMEREGEVVRD-------VDCVITTRELISLAQARGVDFA 289
Query: 286 ALE-------------------ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 326
L + P + T + G+S GY H A
Sbjct: 290 TLPQSPPLPPPSGIASNLLQTLKRPTESTTTKTSP------IPGTSDGY----LIHIATH 339
Query: 327 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
+ L + RNSD + + KT+ + + CYGF+N+QN+VR + +Y +
Sbjct: 340 ILTLHPTSTLRIEPGRNSDTIDYVISTPEKTIARLSRCYGFRNIQNLVRPGVRSEAEYTY 399
Query: 387 VEVMACPSGCLNGGGQIKPK---------PGQSPKELIKTLETIYL-----ENVMLADPF 432
VEVMACP GC NGGGQ++ G + L + ET Y EN
Sbjct: 400 VEVMACPGGCTNGGGQVRYDDEIIASGLVAGTQKEWLGRVDETYYSSAEDEENREECAAA 459
Query: 433 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 472
+ V +EW + G K K + T Y V + +L
Sbjct: 460 QGEWVERFVEEWENRTGVSK-DKLLFTGYRKVENDLGGRL 498
>gi|291521599|emb|CBK79892.1| hydrogenases, Fe-only [Coprococcus catus GD/7]
Length = 581
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 209/412 (50%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L EK + DE I + K V++ +P RA L E FG P+
Sbjct: 192 CVSCGQCIAVCPTGALHEKDNTDEIFEAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTD 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +EF+ R + + LP+++S
Sbjct: 251 VEGKMVAALRRLGFDKVFDTDFAADLTIMEEAHEFLDRVQ---------NGGKLPLITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GAT+K + +K+G P +I V+VMPC K
Sbjct: 302 SPGWIKYCEHYFPD-MTENLSSCKSPQQMFGATLKTYYAEKMGIDPKKIVSVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D ++ +P+VD +TT E+ +I+ + F L + D
Sbjct: 361 KFEIGRDD-------------EDAAGVPDVDIAITTRELARMIKKVGIMFTELPDEEFDS 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L ++ G++GG E R A +TL G+ ++ ++EF+ +R ++ +E V
Sbjct: 408 PLGESTGAAVIF---GATGGVMEAALRTAVETLTGEELK-NVEFQEVRGTEGIKEATYNV 463
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + ++ KVK + DY F+E+M CP GC+NGGGQ + +
Sbjct: 464 AGMD-VKVAVASGLGNARKLLDKVKSGEADYHFIEIMGCPGGCVNGGGQPQVRGSVRNFT 522
Query: 414 LIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L + A + NP ++ LY E+ +PGS KA + +HT Y
Sbjct: 523 DVRAIRAKALYDNDAAKSIRKSHENPAIQQLYKEFFGEPGSHKAHEILHTSY 574
>gi|225709820|gb|ACO10756.1| Nuclear prelamin A recognition factor-like protein [Caligus
rogercresseyi]
Length = 342
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 196/362 (54%), Gaps = 34/362 (9%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVST----SSKQQAEPVK--IS 55
S FS +++ L DFI PS C+ ++ ++ KN +P V ++Q+EP K IS
Sbjct: 3 SRGFSGAIKLTGLDDFITPSLECIKPVESSSSKNV-QPSVQIWNPGDKEKQSEPQKASIS 61
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNIN-KGK---AVIISLSPQSRASLAEHFGIS 111
L DCLAC+GC+T+AE+V++E QS DE + KG +++SLS QS SL+ F +
Sbjct: 62 LADCLACAGCVTTAESVLVEAQSTDELRRRLKAKGSLYDVIVVSLSTQSILSLSHKFNLP 121
Query: 112 PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
L+ + + + K+LGV I++ DL+L E E + R +S + P+L
Sbjct: 122 ILESSRLIIHYFKTLGVDYIYNLKTCEDLSLQEQSAELLQRLSESSKGG--------PLL 173
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMP 230
SS+CPGWICYAEK G +ILPYIS VKSPQQ +G+ +KH + K P+ I HV+VMP
Sbjct: 174 SSSCPGWICYAEKTHGEWILPYISRVKSPQQIMGSLLKHWLSHKQFKAPPERICHVSVMP 233
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C+DKKLEA+R DF DSQ P+VD T+ E+ ++ V+F E
Sbjct: 234 CFDKKLEASRRDFT---DSQ---------GTPDVDLATTSIELEQMMLSDGVSFSPPPEV 281
Query: 291 PLDKMLTNVDDEGHLYGVAGSS-GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
PL L + LY GS GG E+VF + +L G V L+ + S
Sbjct: 282 PLFDSLFG-ESSSDLYVNHGSGFGGACESVFINPITSLSGXVPSSPLKVQDAEKSGLYGA 340
Query: 350 AL 351
+L
Sbjct: 341 SL 342
>gi|312127639|ref|YP_003992513.1| hydrogenase, fe-only [Caldicellulosiruptor hydrothermalis 108]
gi|311777658|gb|ADQ07144.1| hydrogenase, Fe-only [Caldicellulosiruptor hydrothermalis 108]
Length = 579
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 213/418 (50%), Gaps = 40/418 (9%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT DLT++E E I R K + L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTGADLTIMEEGTELINRIK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V+V
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSV 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DSHFDDPMGDATGAGVIFG---TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPK 406
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ I P
Sbjct: 457 EAEIDV-GSMKIKAAVAHGLANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPA 515
Query: 407 PGQSPKELIK-TLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ K IY E+ L +NP V+ LY+E+L P SEKA +HT Y
Sbjct: 516 KVKEKVDVAKLRASAIYDEDRSLPIRKSHENPAVKRLYEEFLGHPNSEKAHHILHTHY 573
>gi|397691471|ref|YP_006528725.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
gi|395812963|gb|AFN75712.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
Length = 576
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 223/415 (53%), Gaps = 39/415 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGIS 111
+++ DC+ C CI T L E+ E ++ +N K K ++ ++P RA+L E + +
Sbjct: 184 LNISDCILCGQCILVCPTAALRERSHAKEVVNALNDKKKFTVVQVAPAVRATLGEEYNL- 242
Query: 112 PL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
P+ V K+ T L+ LG +FDT+ DLT++E E I R + P
Sbjct: 243 PIGTNVTGKIITGLRRLGFDKVFDTNFGADLTILEEATELINRLGNGGVT---------P 293
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGWI +AE+ ++L ++S+ KSP + GA IK + +K+G P++I+ V++M
Sbjct: 294 MFTSCCPGWIKFAEQNY-PHLLEHLSTCKSPHEMEGAIIKSYYAKKMGLNPEDIFVVSIM 352
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA+R + S++ ++P+VD+VLTT E++ L ++ ++F L +
Sbjct: 353 PCTVKKFEASRPEL-----SED--------KMPDVDAVLTTRELVRLFKVAGIDFNDLPD 399
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D L ++ G+SGG E R A L GK +E +++ +R D +E
Sbjct: 400 DEFDNPLGESTGAAAIF---GTSGGVMEAALRTAYFKLSGKELE-NVDLTNVRGFDGVKE 455
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
++++ G T + A+ G N++ I+ +++ + Y F+EVMACP GC+NGGGQ
Sbjct: 456 FSVDINGST-VNVAVVNGIGNVRGILEQIERGESKYHFIEVMACPGGCINGGGQ---PIH 511
Query: 409 QSPKELIKTLETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q P+++ K +Y + + + +N ++ LY+E+L +P + + +HT Y
Sbjct: 512 QKPEKVQKRARALYEIDAKMKNRKSHENESLKKLYNEFLGEPNGHLSHELLHTTY 566
>gi|220929645|ref|YP_002506554.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
gi|219999973|gb|ACL76574.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
Length = 582
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 211/411 (51%), Gaps = 36/411 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C C CI+ L EK D+ S + +K V++ +P R +L E FG+ P+ +
Sbjct: 191 CTMCGQCISVCPVGALREKDDTDKVWSALADKELHVVVQTAPAVRVALGEEFGL-PIGTR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L LG +FDT + DLT++E E + R K + LP+++S
Sbjct: 250 VTGKMAAALNHLGFAKVFDTDTAADLTIMEEGTELLNRIK---------NGGKLPVITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +SS KSP + GA +K + +K+G P +I+ V+VMPC K
Sbjct: 301 SPGWIKFCEHNYPEF-LENLSSCKSPHEMFGAVLKTYYAEKMGIDPKKIFVVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + +P+VD V+TT E+ +I+ ++F LE+ D
Sbjct: 360 KFEAQRPEL-------------SATGLPDVDVVITTRELARMIKEAGIDFNNLEDMDFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ N G ++G ++GG E R ++ + GK E +E+ +R + + A
Sbjct: 407 PMGNATGAGVIFG---ATGGVMEAALRTVSEIVAGKSFE-DIEYTAVRGIEGIKEATVAI 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKE 413
G +K A+ G N + ++ +K + Y FVE+MACP GC+NGGGQ I+P +S +
Sbjct: 463 GDMKVKAAVANGLGNARKLLDSIKAGEAAYDFVEIMACPGGCVNGGGQPIQPSSVRSWTD 522
Query: 414 L-IKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L + + IY E+V L +NP+++ +YD++ +PGS KA + +HT Y
Sbjct: 523 LRTERAKAIYEEDVSLPIRKSHENPVIKEMYDKYFGEPGSHKAHEILHTHY 573
>gi|320039449|gb|EFW21383.1| iron hydrogenase [Coccidioides posadasii str. Silveira]
Length = 618
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 95/489 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKPQVSTSSKQQAE---PVKISLKD 58
S L DL+DFI+P C V +L + ++ +V+T K AE P +ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAKSERDESAYEVTTEDKVAAENPSPAQISLTD 60
Query: 59 CLACSGCITSAETVMLEKQS---------------LDEFLSNINKG-----KAVIISLSP 98
CLACSGC+TSAE V++ QS +D F + + G + + S+SP
Sbjct: 61 CLACSGCVTSAEAVLISLQSHAEVLNTLDAYPELRVDGFRNGVQNGATGDARIFVASVSP 120
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACN 147
Q RAS+A +G+S + + FL G + DT+ RD+ L +
Sbjct: 121 QVRASMAATYGVSEKEAGYMIEQFLSGPQGLRAGGQHGSGFTWVVDTNVIRDVVLELTTD 180
Query: 148 EFIA-RYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E A R K + E + +P +LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 EATASRAKFDSTATSESAEFPIPRKPILSSACPGWICYAEKT-HPHVLPHLSRLKSPQAL 239
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQEETYRDEGLE 260
G IK + ++L P I+H+ +MPC+DKKLEA+R+ D +Q + + + ++
Sbjct: 240 TGTFIKTILSKRLNVPPSRIWHLAIMPCFDKKLEASRQELTDASWQT-TNHDMFASPAMD 298
Query: 261 IP--EVDSVLTTGEVLDLIQLKAVNFEALEE--------SPL-DKMLTNVDDEGHLYG-- 307
P +VD V+T+ E+L L + ++ L +P D + HL
Sbjct: 299 QPIRDVDCVITSRELLMLASSRNISLLNLPLTPLPSSFTTPFPDPRIAQFLFPKHLASNQ 358
Query: 308 --VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFAL 363
+G SGGY H T ++ + RN+D + L G+ ++K A
Sbjct: 359 SVFSGPSGGY----LHHLLTTHQALHPNSTIQAQRGRNADVIDYTLVSAETGRPIIKAAR 414
Query: 364 CYGFQNLQNIVRKVKMRKC----------------------------DYQFVEVMACPSG 395
YGF+N+QN+VRK+K K DY ++EVMACP G
Sbjct: 415 YYGFRNIQNLVRKLKPAKTSRLPGARATVSRRTGTSAPHTAAGGGVSDYAYIEVMACPGG 474
Query: 396 CLNGGGQIK 404
C NGGGQI+
Sbjct: 475 CTNGGGQIR 483
>gi|323484502|ref|ZP_08089868.1| hypothetical protein HMPREF9474_01619 [Clostridium symbiosum
WAL-14163]
gi|323692563|ref|ZP_08106796.1| hydrogenase [Clostridium symbiosum WAL-14673]
gi|323402280|gb|EGA94612.1| hypothetical protein HMPREF9474_01619 [Clostridium symbiosum
WAL-14163]
gi|323503429|gb|EGB19258.1| hydrogenase [Clostridium symbiosum WAL-14673]
Length = 582
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 208/413 (50%), Gaps = 40/413 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-- 114
C++C CI T L+++ + F + + K VI+ +P RA+L E FG P+
Sbjct: 192 CVSCGQCIAVCPTGALQEKDFTDKVFAAIADPAKHVIVQTAPAVRAALGEEFGY-PIGTG 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ + LK LG +FDT S DLT++E +EF+ R + + LP+++S
Sbjct: 251 VEGKMVSALKMLGFDKVFDTDFSADLTIMEEAHEFLDRVQ---------NGGVLPLITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GA K + QK G P +I V++MPC K
Sbjct: 302 SPGWIKYCEHYFPD-MTKNLSSCKSPQQMFGAIAKSYYAQKAGIDPKDIVSVSIMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D Q +P+VD LTT E+ +I+ + F AL ++ D
Sbjct: 361 KFEVGR-------DHQAAN------GVPDVDIALTTRELARMIRKAGIKFTALPDASYDS 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEV 353
L ++G ++GG E R A +TL G+ ++ L+F +R + +E V
Sbjct: 408 PLGLSTGAATIFG---ATGGVMEAALRTAVETLTGEELKA-LDFTEVRGTAGIKEATYNV 463
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + K A+ G N + ++ KVK + Y F+E+M CP GC+NGGGQ + +PG
Sbjct: 464 AGMDV-KVAVASGLNNARELLNKVKSGEASYHFIEIMGCPGGCVNGGGQPQ-QPGYVRDT 521
Query: 414 L-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ I+ L L N A+ + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 522 VDIRGLRAQVLYNSDKANTIRKSHENPAIKELYASFLGEPGSEKAHHLLHTSY 574
>gi|448508753|ref|XP_003865997.1| Nar1 cytosolic iron-sulfur (FeS) protein assembly machinery protein
[Candida orthopsilosis Co 90-125]
gi|380350335|emb|CCG20556.1| Nar1 cytosolic iron-sulfur (FeS) protein assembly machinery protein
[Candida orthopsilosis Co 90-125]
Length = 533
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 222/482 (46%), Gaps = 101/482 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-----------------VSLKKATFKNPDKPQVSTSSKQ 47
S L DL+DFI+P C+ V ++ + NP + +
Sbjct: 16 MSAILSADDLNDFISPGVACIKPVQDTNTNQEANGNGEVEIQIDSEGNPLEISKIDGKQT 75
Query: 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAE 106
P +ISL DCLACSGCITSAE V++ + S E + + + K + S+S QSRASLA
Sbjct: 76 NLSPAQISLADCLACSGCITSAEEVLVAQHSHHELVKALKLQDKIFVASISQQSRASLAT 135
Query: 107 HFGISPLQVFKKLTT--FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
+ + P++ KL + +G K + TS R L+LI I R
Sbjct: 136 AYNL-PVETIDKLLIDLLVNQMGFKYVVGTSLGRKLSLINEAQHVITN----------RG 184
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
S P+LSS CPGW+ YAEK Y+LP IS+VKS QQ G +K + ++Y
Sbjct: 185 KGSNPILSSICPGWVLYAEKT-HPYVLPMISTVKSAQQITGCLLKTLTAHDFHVQKSQVY 243
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
H+++MPC+DKKLE+AR + G IP+VD VLT E++ L++ ++
Sbjct: 244 HLSIMPCFDKKLESARPEIF-------------GDTIPDVDCVLTAKELIALLEEESYQL 290
Query: 285 EALEESPLDKM-------LTNVDDEGHLY-----GVAGSSGGYAETVFRHAAKTLFGKVI 332
P+ + L +D ++ +SGGYA R + + ++
Sbjct: 291 VPKVNPPIVNLPTEDVYSLVAPNDWPYVQYSWTNDPGSASGGYAFNYLRCLQEDM---ML 347
Query: 333 EGHLE----FKTIR--NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR------ 380
+GH E K IR NSD E+ L + + A+ GF+N+QN+VRK+K
Sbjct: 348 KGHDESGFSMKIIRGKNSDVYEMRLSYKEDKVASAAIVNGFRNIQNLVRKLKPNGKATGR 407
Query: 381 ---------------------------KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
K DY VE+MACPSGC+NGGGQI P S K+
Sbjct: 408 VNPLAARRRTRIKNSESTPVEETADPSKVDY--VEIMACPSGCINGGGQINPPKDVSEKD 465
Query: 414 LI 415
I
Sbjct: 466 WI 467
>gi|376261922|ref|YP_005148642.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
gi|373945916|gb|AEY66837.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
Length = 582
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 213/411 (51%), Gaps = 37/411 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C C CI+ L EK ++ S + +K V++ +P R +L E FG+ P+ +
Sbjct: 191 CTMCGQCISVCPVGALREKDDTEKVWSALADKELHVVVQTAPAVRVALGEEFGL-PIGTR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L +G +FDT + DLT++E E + R K + LP+++S
Sbjct: 250 VTGKMAAALNHMGFAKVFDTDTAADLTIMEEGTELLNRIK---------NGGKLPVITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +SS KSP + GA +K + +K+G P +I+ V+VMPC K
Sbjct: 301 SPGWIKFCEHNYPEF-LENLSSCKSPHEMFGAVLKTYYAEKMGIDPKKIFVVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + + +P+VD V+TT E+ +I+ ++F LE+ D
Sbjct: 360 KFEAQRPEL-------------SAIGLPDVDVVITTRELARMIKESGIDFNNLEDKDFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ N G ++G ++GG E R ++ + GK + +E+ +R + + A V
Sbjct: 407 PMGNATGAGVIFG---ATGGVMEAALRTVSEIVAGKSFD--IEYAAVRGIEGIKEATVVI 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKE 413
G +K A+ G N + ++ +K + Y FVE+MACP GC+NGGGQ I+P +S +
Sbjct: 462 GDMKVKAAVANGLGNARKLLDSIKAGEASYDFVEIMACPGGCVNGGGQPIQPSSVRSWTD 521
Query: 414 L-IKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L + + IY E+V L +NP+++ +YD++ +PGS KA + +HT Y
Sbjct: 522 LRAERAKAIYEEDVSLPIRKSHENPVIKEMYDKYFGEPGSHKAHEILHTHY 572
>gi|239627946|ref|ZP_04670977.1| hydrogenase [Clostridiales bacterium 1_7_47_FAA]
gi|239518092|gb|EEQ57958.1| hydrogenase [Clostridiales bacterium 1_7_47FAA]
Length = 596
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 213/427 (49%), Gaps = 48/427 (11%)
Query: 59 CLACSGCITSAETVMLEKQSL--DEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L ++ D F + + K VI+ +P RA L E FG+ P+
Sbjct: 191 CVSCGQCIAVCPTGALTEKDYTGDVFAAIADPSKHVIVQTAPAVRAGLGEEFGL-PIGTD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT+ S DLT++E +EF+ R + + LPM++S
Sbjct: 250 VEGKMAAALRRLGFDKVFDTNFSADLTIMEEAHEFLDRVQ---------NGGVLPMITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E + +S+ KSPQQ GA K + +K G P +I V+VMPC K
Sbjct: 301 SPGWVKYCEHYFPD-MTENLSTCKSPQQMFGAIAKSYYAEKAGIDPKDIVSVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RED + +P+VD +TT E+ +I+ + F L + D
Sbjct: 360 KFEIGRED-------------QDANGVPDVDISITTRELARMIKKAGIRFLDLPDEKFD- 405
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVA 350
D G G A G++GG E R A ++L G+ + L+F+ +R + +E
Sbjct: 406 -----DPLGLGTGAAVIFGATGGVMEAALRTAVESLTGEELP-KLDFEEVRGTKGIKEAT 459
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + DY F+E+M CP GC+NGGGQ + +PG
Sbjct: 460 YNVAGMDV-KVAVASGLGNAKELLEKVKSGEADYHFIEIMGCPGGCVNGGGQPQ-QPGHV 517
Query: 411 PKEL-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
I+ L L N+ A+P + NP ++ LY +L +PGSE A +HT Y V
Sbjct: 518 RNTTDIRGLRAKVLYNIDSANPIRKSHENPAIKELYAAYLGEPGSEVAHHLLHTTY--VK 575
Query: 466 KSITAQL 472
++I Q
Sbjct: 576 RTINKQF 582
>gi|312793481|ref|YP_004026404.1| hydrogenase, fe-only [Caldicellulosiruptor kristjanssonii 177R1B]
gi|344995973|ref|YP_004798316.1| hydrogenase, Fe-only [Caldicellulosiruptor lactoaceticus 6A]
gi|312180621|gb|ADQ40791.1| hydrogenase, Fe-only [Caldicellulosiruptor kristjanssonii 177R1B]
gi|343964192|gb|AEM73339.1| hydrogenase, Fe-only [Caldicellulosiruptor lactoaceticus 6A]
Length = 579
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 213/418 (50%), Gaps = 40/418 (9%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT DLT++E E I R K + L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTGADLTIMEEGTELINRIK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V++
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DSHFDDPMGDATGAGVIFG---TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPK 406
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ I P
Sbjct: 457 EAEIDV-GSMKIKAAVAHGLANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPA 515
Query: 407 PGQSPKELIK-TLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ K IY E+ L +NP V+ LY+E+L P SEKA +HT Y
Sbjct: 516 KVKEKIDVAKLRASAIYDEDRSLPIRKSHENPAVKRLYEEFLGHPNSEKAHHILHTHY 573
>gi|402078008|gb|EJT73357.1| cytosolic Fe-S cluster assembly factor nar-1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 604
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 152/490 (31%), Positives = 229/490 (46%), Gaps = 103/490 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP------------DKPQVSTSSKQQAEPV 52
S L + DL+DFI+P C+ ++ P D + SS P
Sbjct: 1 MSAILSVDDLNDFISPGVACIKPVETLPPSQPAGDPTLEHEVILDGQPGAASSAGAGAPA 60
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-------------------- 92
+ISL DCLACSGC+TSAE V++ QS E LS ++ A+
Sbjct: 61 QISLTDCLACSGCVTSAEAVLVSLQSHSELLSVLDSAPALQVRGPDAQGRFSVDGLEDPA 120
Query: 93 ----IISLSPQSRASLAEHF--GISPLQVFKKLTTFLKS-----LGVKS------IFDTS 135
+ S+SPQSRASLA G+S Q + L L G K + DT+
Sbjct: 121 RRLFVASVSPQSRASLAAACSQGVSESQAGRMLDRLLMGPEGLMAGGKWGNRFEWVVDTN 180
Query: 136 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 195
+RD L+ +E + R + + ++ P+L+++CPGW+CYAEK ++LP++S
Sbjct: 181 AARDACLLLGADEVLGRNQTGDAALAKK-----PILTASCPGWVCYAEKTH-PHVLPHLS 234
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 255
VKSPQ G IK + + L PD I+H+++MPC+DKKLEA+RE+ + +
Sbjct: 235 RVKSPQALTGTLIKTTLSRVLNIPPDRIWHLSIMPCFDKKLEASREELTEAVWAGNGA-- 292
Query: 256 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML---TNVDD-------EGHL 305
G +VD V+T+ E+ L + ++++F +L S L + L + +++
Sbjct: 293 -PGRGTRDVDCVITSKEIFMLTESRSIDFFSLPASSLRQQLFPDSTINEFFFPQNSRKRP 351
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALC 364
AGSSGG + + G LE RN D E + G+TL + A
Sbjct: 352 LPAAGSSGGNLYYILQDVLSAHAGS----RLETARGRNVDVVEYTVVAASGETLFRAARY 407
Query: 365 YGFQNLQNIVRKVKMRK------------------------------CDYQFVEVMACPS 394
YGF+N+QN+VRK+K K ++ ++EVMACP
Sbjct: 408 YGFRNIQNLVRKLKPAKPSRMPGGKPFGSARRVPTGRGGGGPGGAGGVEHAYIEVMACPG 467
Query: 395 GCLNGGGQIK 404
GC NGGGQ+K
Sbjct: 468 GCTNGGGQVK 477
>gi|281419484|ref|ZP_06250498.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
gi|281406890|gb|EFB37154.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
Length = 1149
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 221/412 (53%), Gaps = 36/412 (8%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQV 115
DC++C C+T+ L+ ++ + + IN K ++ ++P R+ ++ FG+S +
Sbjct: 671 DCVSCGQCVTACPCAALDYRRERGKVVRAINDPKKTVVGFVAPAVRSLISSTFGVSYEEA 730
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ LK LG +FD + + DLT++E EF++R + + +P +S C
Sbjct: 731 SPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEFLSRIQ---------NKGVMPQFTSCC 781
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + EK+ I+P++S+ KSPQ +GAT+K+H + +G ++++ V+++PC KK
Sbjct: 782 PGWINFVEKRYPE-IIPHLSTCKSPQMMMGATVKNHYAKLMGINKEDLFVVSIVPCLAKK 840
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F+ I +VD+VLTT E+L++++L + + D+
Sbjct: 841 YEAARPEFIHD-------------GIRDVDAVLTTTEMLEMMELADIKPSEVVPQEFDEP 887
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
V G L+ G+SGG AE R A + L GKV+ HLEF+ IR + +E ++
Sbjct: 888 YKQVSGAGILF---GASGGVAEAALRMAVEKLTGKVLTDHLEFEEIRGFEGVKESTIDAN 944
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G T ++ A+ G +N + I+ K+ + D Y +EVMACP GC+ G G P+ S +
Sbjct: 945 G-TKVRVAVVSGLKNAEPIIEKI-LNGVDVGYDLIEVMACPGGCICGAGHPVPEKIDSLE 1002
Query: 413 ELIKTLETIYLENVM-LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + L + ++ V+ +NP + LY+E+ +P S A + +HT Y P
Sbjct: 1003 KRQQVL--VNIDKVLKYRKSQENPDILRLYNEFYGEPNSPLAHELLHTHYTP 1052
>gi|150866595|ref|XP_001386245.2| nuclear architecture related protein [Scheffersomyces stipitis CBS
6054]
gi|259511477|sp|A3LYR2.2|NAR1_PICST RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|149387851|gb|ABN68216.2| nuclear architecture related protein [Scheffersomyces stipitis CBS
6054]
Length = 545
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 161/506 (31%), Positives = 230/506 (45%), Gaps = 124/506 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-------------------VSLKKATFKNPDKPQVSTSS 45
S L DL+DFI+P C+ V ++ + NP +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPPAQNSDQKFNSLNENGEVEIQIDSEGNPLEISKIDGK 60
Query: 46 KQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK------GKAVIISLSPQ 99
+ P +ISL DCLACSGCITSAE V++ + S +E + +N+ K + S+S Q
Sbjct: 61 QTNLSPAQISLADCLACSGCITSAEEVLVAQHSHEELIKALNEKVDNNSTKVFVASISHQ 120
Query: 100 SRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
SRASLA + +S ++ K L F+ +G K I TS R L+LI I K+ E
Sbjct: 121 SRASLATAYNLSIEEIDKLLINLFINQMGFKYIVGTSIGRKLSLINEAQNLIE--KKESE 178
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
D P+LSS CPGW+ YAEK Y+LP +S+VKSPQQ G +K +LG
Sbjct: 179 FDG-------PVLSSICPGWVLYAEKT-HPYVLPRMSTVKSPQQITGCLLKTLAAHELGV 230
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
++IYH+++MPC+DKKLE+AR E Y ++ +VD VLT E++ L++
Sbjct: 231 TRNDIYHLSIMPCFDKKLESAR----------PEKYGEQNTS-NDVDCVLTAKELVTLLE 279
Query: 279 LKAVNFEALEESPLDKMLTN-----VDDEGHLYG-----------------VAGSSGGYA 316
+ F+ + P +TN VD LY +SGGY
Sbjct: 280 QHSDKFQLI--PPQAHTITNSAIPVVD----LYSKCAPRTWPLVQYSWSNDSGSASGGYG 333
Query: 317 ETVFRHAAKTLFGK-----VIEG-HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 370
+ L K EG +++ RN+D E+ L + L A+ GF+N+
Sbjct: 334 YNYLKMYQNHLIMKHPTKYQQEGFSIDYVKGRNTDLTEMRLMYGSEKLASSAIVNGFRNI 393
Query: 371 QNIVRKVK-----------------------------------------MRKCDYQFVEV 389
QN+VRK+K KCDY VE+
Sbjct: 394 QNLVRKLKPTVKPGSTTGKGNALVARRRARVAGGITKASSPAGSDESADASKCDY--VEI 451
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELI 415
MACP+GC+NGGGQI P S K+ +
Sbjct: 452 MACPNGCINGGGQINPPEDVSEKDWL 477
>gi|367052883|ref|XP_003656820.1| hypothetical protein THITE_2121990 [Thielavia terrestris NRRL 8126]
gi|347004085|gb|AEO70484.1| hypothetical protein THITE_2121990 [Thielavia terrestris NRRL 8126]
Length = 587
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 226/484 (46%), Gaps = 98/484 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPD-KPQ-----------VSTSSKQQAEPV 52
S L DL+DFI+P C+ ++ P +PQ ++ P
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPTAPPSSEPQSLEHEVILDGQQPQQAQAGGGPA 60
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-------------------- 92
KISL DCLACSGC+TSAE V++ QS +E LS ++ A+
Sbjct: 61 KISLTDCLACSGCVTSAEAVLVSLQSHNEVLSVLDAAPALRLTQDRHRDGAYSVSGLEDP 120
Query: 93 -----IISLSPQSRASLAEHFG--ISPLQVFKKLTTFL------------KSLGVKSIFD 133
+ S+SPQ+RA LA G ++ Q + + L G + D
Sbjct: 121 AAKLFVASVSPQTRAGLAAACGGGVTAQQAGRMIEALLLQGEAGLAAGGKHGNGFTWVVD 180
Query: 134 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 193
T+ +R+ L+ +E + E + P+L+S+CPGW+CYAEK Y+LP+
Sbjct: 181 TNAAREACLVLGSDEVLG------EDGAGGDRPTAPVLTSSCPGWVCYAEKTH-PYVLPH 233
Query: 194 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 253
+S VKSPQ +G +K + + LG PD I+H+ VMPC+DKKLEA+RE+ + E
Sbjct: 234 LSRVKSPQALMGTLLKTTLSRVLGIAPDRIWHLAVMPCFDKKLEASREELTDAVWGGEGK 293
Query: 254 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV----- 308
+ G + +VD V+TT E+L L + + ++F L +S + D H +
Sbjct: 294 H---GKGVRDVDCVITTKEILMLAESRGIDFFGLSKSASKQQPAFPDPVIHKFLFPPQPR 350
Query: 309 -----AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFA 362
AG+SGG + G +E RN+D + A + G+T+ K A
Sbjct: 351 TQRRDAGTSGGNLHFILHDVQSRHPGS----RIEMTRGRNADVVDYAVVNPSGETVFKAA 406
Query: 363 LCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGG 400
YGF+N+QN+VRK+K + +Y +VEVMACP GC NGG
Sbjct: 407 RYYGFRNIQNLVRKLKPARPSRMPGGRPVGGARRPGGKSAGLEYAYVEVMACPGGCTNGG 466
Query: 401 GQIK 404
GQIK
Sbjct: 467 GQIK 470
>gi|281412258|ref|YP_003346337.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10]
gi|281373361|gb|ADA66923.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10]
Length = 582
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 215/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E S+ L + K K +++ +P R ++ E FG +P +
Sbjct: 190 DCIGCGQCAAFCPTGAIVENSSVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTI 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+L L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 250 STGQLVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 303 CPGWVNLVEKAYPE-LRTRLSSAKSPQGMLSALVKTYFAEKLGVKPEDIFHVSIMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 362 KDEALRKQLMVN-------------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDA 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + + F+ +R RE +++
Sbjct: 409 PLGISTGAAVLFGV---TGGVMEAALRTAYELKTGKTLP-KIVFEEVRGLKGVREAEIDL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + K A+ +G N +N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 465 DGKKI-KIAVVHGTANARNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEI 520
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E ++L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 521 LRKRAEAIYTIDERMVLRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 570
>gi|160936127|ref|ZP_02083500.1| hypothetical protein CLOBOL_01023 [Clostridium bolteae ATCC
BAA-613]
gi|158440937|gb|EDP18661.1| hypothetical protein CLOBOL_01023 [Clostridium bolteae ATCC
BAA-613]
Length = 581
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 210/416 (50%), Gaps = 46/416 (11%)
Query: 59 CLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L ++ + D F + + K VI+ +P RA L E FG+ P+
Sbjct: 191 CVSCGQCIAVCPTGALTEKDYTADVFAAIADPKKHVIVQTAPAVRAGLGEEFGL-PIGTD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT+ S DLT++E +EFI R + + LP+++S
Sbjct: 250 VEGKMAAALRRLGFDKVFDTNFSADLTIMEEAHEFIDRVQ---------NGGVLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E + +SS KSPQQ GA K + +K G P +I V+VMPC K
Sbjct: 301 SPGWVKYCEHYFPD-MTENLSSCKSPQQMFGAIAKSYYAEKAGIDPKDIVSVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RED ++ +P+VD +TT E+ +I+ + F L + D
Sbjct: 360 KFEIGRED-------------EDANGMPDVDISITTRELARMIKKAGIKFLDLPDEEFDA 406
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVA 350
L G G A G++GG E R A +TL G+ + +F +R + +E A
Sbjct: 407 PL------GLGTGAAVIFGATGGVMEAALRTAVETLTGEELP-KPDFTEVRGTKGIKEAA 459
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + +Y F+E+M CP GC+NGGGQ + +PG
Sbjct: 460 YNVAGMEV-KIAVASGLGNARELLNKVKSGEANYHFIEIMGCPGGCVNGGGQPQ-QPGHV 517
Query: 411 PKEL-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+ L L ++ A+P + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 518 RNTTDIRGLRAKVLYDIDTANPIRKSHENPAIKELYATYLGEPGSEKAHHLLHTTY 573
>gi|325681306|ref|ZP_08160835.1| ferredoxin hydrogenase [Ruminococcus albus 8]
gi|324106997|gb|EGC01284.1| ferredoxin hydrogenase [Ruminococcus albus 8]
Length = 580
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 138/415 (33%), Positives = 207/415 (49%), Gaps = 41/415 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI S + EK S + I + K VI +P RA+L E FG +P+
Sbjct: 191 CVGCGQCIVSCPVGALTEKSSEKKVWDAIADPEKKVIFFTAPSIRATLGEEFG-NPVGTN 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG +F+ + DLT++E NE I R + +LPM +S
Sbjct: 250 VEGKMVAAIRRLGPDQVFNMDVTADLTIVEEANELIERIT---------TGGTLPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + E + LP++SS KSPQQ GA +K + QK P ++ V+V+PC K
Sbjct: 301 CPGWVKFCEHFYPDF-LPHLSSCKSPQQMFGAVLKSYYAQKNNIDPKNLFVVSVIPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+ + EG + +VD LTT E+ +I+ ++F +L + D
Sbjct: 360 KFEVTREE------------QREG-DFDDVDVALTTRELGRMIREAGIDFNSLPDEQFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
G ++G ++GG E R AA L GK LEF +R + + A
Sbjct: 407 PFETASGAGAIFG---ATGGVMEAALRTAAVKLDGKC--EPLEFTEVRGTKGIKEATYTV 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G +K A+ G N + IV + + DYQFVE+MACP GC+NGGGQ P S +
Sbjct: 462 GGVTVKVAVASGLANAREIVEGIIKGEKDYQFVEIMACPGGCINGGGQ--PVQSDSVRNF 519
Query: 415 I--KTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ KTL L ++ L ++P++ LY E+ E+PG+ KA +++HT Y P
Sbjct: 520 VDLKTLRAKALYDADSSMKLRMSHESPVMDMLYKEFFEKPGAHKAHEYLHTTYVP 574
>gi|303311227|ref|XP_003065625.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Coccidioides posadasii C735 delta SOWgp]
gi|240105287|gb|EER23480.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Coccidioides posadasii C735 delta SOWgp]
Length = 618
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 230/481 (47%), Gaps = 95/481 (19%)
Query: 13 DLSDFIAPSQNC---VVSLKKATFKNPDKPQVSTSSKQQAE---PVKISLKDCLACSGCI 66
DL+DFI+P C V +L + ++ +V+T K AE P +ISL DCLACSGC+
Sbjct: 9 DLNDFISPGVACIKPVETLPAKSERDESAYEVTTEDKVAAENPSPAQISLTDCLACSGCV 68
Query: 67 TSAETVMLEKQS---------------LDEFLSNINKG-----KAVIISLSPQSRASLAE 106
TSAE V++ QS +D F + + G + + S+SPQ RAS+A
Sbjct: 69 TSAEAVLISLQSHAEVLNTLDAYPELRVDGFRNGVQNGATGDARIFVASVSPQVRASMAA 128
Query: 107 HFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACNEFIA-RYK 154
+G+S + + FL G + DT+ RD+ L +E A R K
Sbjct: 129 TYGVSEKEAGYMIEQFLSGPQGLRAGGQHGSGFTWVVDTNVIRDVVLELTTDEATASRAK 188
Query: 155 QSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 211
+ E + +P +LSSACPGWICYAEK ++LP++S +KSPQ G IK
Sbjct: 189 FDSTATSESAEFPIPRKPILSSACPGWICYAEKT-HPHVLPHLSRLKSPQALTGTFIKTI 247
Query: 212 ICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQEETYRDEGLEIP--EVDS 266
+ ++L P I+H+ +MPC+DKKLEA+R+ D +Q + + + ++ P +VD
Sbjct: 248 LSKRLNVPPSRIWHLAIMPCFDKKLEASRQELTDASWQT-TNHDMFASPAMDQPIRDVDC 306
Query: 267 VLTTGEVLDLIQLKAVNFEALEE--------SPL-DKMLTNVDDEGHLYG----VAGSSG 313
V+T+ E+L L + ++ L +P D + HL +G SG
Sbjct: 307 VITSRELLMLASSRNISLLNLPLTPLPSSFTTPFPDPRIAQFLFPKHLASNQSVFSGPSG 366
Query: 314 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFALCYGFQNLQ 371
GY H T ++ + RN+D + L G+ ++K A YGF+N+Q
Sbjct: 367 GY----LHHLLTTHQALHPNSTIQAQRGRNADVIDYTLVSAETGRPIIKAARYYGFRNIQ 422
Query: 372 NIVRKVKMRKC----------------------------DYQFVEVMACPSGCLNGGGQI 403
N+VRK+K K DY ++EVMACP GC NGGGQI
Sbjct: 423 NLVRKLKPAKTSRLPGARATVSRRTGTSAPHTAAGGGVSDYAYIEVMACPGGCTNGGGQI 482
Query: 404 K 404
+
Sbjct: 483 R 483
>gi|380495190|emb|CCF32587.1| cytosolic Fe-S cluster assembly factor NAR1 [Colletotrichum
higginsianum]
Length = 589
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 147/484 (30%), Positives = 228/484 (47%), Gaps = 94/484 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQ---QAEP---------- 51
S L DL+DFI+P C+ ++ P S+ + +P
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIETLPSAAPSSQDASSLEHEVILDGQPGSAAAANAPP 60
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV------------------- 92
+ISL DCLACSGC+TSAE V++ QS E L+ ++ G A+
Sbjct: 61 AEISLTDCLACSGCVTSAEAVLVSMQSHTEVLNTLDFGPALRIVGPDCSGQFRVDGLEDE 120
Query: 93 -----IISLSPQSRASLAEHFGISPL-----QVFKKLTTFLKSL--------GVKSIFDT 134
+ S+SPQ+RASLA G + ++L + + L G + DT
Sbjct: 121 SRKLFVASVSPQTRASLAAAAGGGTTEEEAGHMLERLLSGPEGLASAGKHRNGFTWVLDT 180
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ +R+ L+ +E + + + + P+L+S+CPGW+CYAEK Y+LP++
Sbjct: 181 NVAREACLVLGADEVLGAERAPASTAAAATK---PILTSSCPGWVCYAEKTH-PYVLPHL 236
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
S VKSPQ +G +K + +KLG P I+H+ VMPC+DKKLEA+RE+ + +
Sbjct: 237 SRVKSPQALMGTLLKTTLSKKLGIPPSRIWHLAVMPCFDKKLEASREELT------DSVW 290
Query: 255 RDEGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEESPL--------DKMLTNVDDEG 303
+GL + +VD V+T+ EVL L + + +NF + S L D L + G
Sbjct: 291 AGDGLPGRGVRDVDCVITSKEVLMLAESRGLNFFDVPRSKLNHQRPLFPDARLASFLFPG 350
Query: 304 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFA 362
H + + G + +++ K + ++ RN+D E + G + K A
Sbjct: 351 HGAHRSSRAAGTSGGNLYFTLQSVASKHPDSQIQVVRGRNADVVEFIVASSTGDPIFKAA 410
Query: 363 LCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGG 400
YGF+N+QN+VRK+K + +Y +VEVMACP GC NGG
Sbjct: 411 RYYGFRNIQNLVRKLKPARPSRMPGGKAFGAARRPTGKSAGLEYAYVEVMACPGGCTNGG 470
Query: 401 GQIK 404
GQIK
Sbjct: 471 GQIK 474
>gi|71017002|ref|XP_758949.1| hypothetical protein UM02802.1 [Ustilago maydis 521]
gi|74702333|sp|Q4PAR1.1|NAR1_USTMA RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|46098480|gb|EAK83713.1| hypothetical protein UM02802.1 [Ustilago maydis 521]
Length = 827
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 164/506 (32%), Positives = 230/506 (45%), Gaps = 144/506 (28%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVST--------------------- 43
FS L + DL+D++ PSQ C+ ++ A + D VS
Sbjct: 3 FSGALTLTDLNDYLGPSQACIKPVQAADVPSQDHSDVSALAASASTHIAIDHDGAYYESS 62
Query: 44 --------------SSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEF------L 83
+ + E +ISL DCLACSGC+TSAE+V++ QS DE L
Sbjct: 63 TPPSSSLSAADSRPRQRTKLETAQISLNDCLACSGCVTSAESVLITMQSQDEMRRAIAEL 122
Query: 84 SNINKGKAVIISLSPQSRASLAEHFGIS---------------PLQV-FKKLTTFLKSL- 126
+ N K V+ S+S QS ASL+ + PL+V +++ FLK++
Sbjct: 123 NQSNANKLVVASISTQSLASLSAKYTFQHPQPSSSRSASTSTLPLRVLLHRISYFLKTVF 182
Query: 127 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQE---------SDDER------SNSSLPML 171
G ++DT+ +R + L E EF R + +++ DD+R +LPML
Sbjct: 183 GFDHVYDTTFARHIALKEHQREFFQRRENARKRAKLSNAPADDDDRLHPDQVDGPTLPML 242
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF----RPDE--IYH 225
+SACPGWICYAEK G +LPYIS+ KSPQQ G K + ++LG PD+ IYH
Sbjct: 243 ASACPGWICYAEKTHGE-LLPYISTTKSPQQVAGVIAKRFLPERLGLLAPSAPDQPSIYH 301
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF- 284
VTVMPCYDKKLEA+R DF D+ EVD VLTTGE+ L+ +A +
Sbjct: 302 VTVMPCYDKKLEASRPDFY-----------DDITGTKEVDCVLTTGELDKLMLDEAFDIC 350
Query: 285 -------EALEESPLDKML-----TNVDDEGH---------------LYGVAGSSGGYAE 317
EA++ES + L T D G L SSGGY
Sbjct: 351 TPVPGEQEAIQESIAELSLQQAFNTPNPDVGSASVSMMPRLPRLPQLLDQPGSSSGGYLF 410
Query: 318 TVFRHA------------AKTLFGKVIEGHLEFKTIRNSDFREVALEV------------ 353
+ R ++ + I L+ + IR +DF E L
Sbjct: 411 LLMRAVWLDWISVHWDSLPLSVREQGILPKLDVRVIRTTDFTEFVLRAPTQLVEPCNDDT 470
Query: 354 -EGKTLLKFALCYGFQNLQNIVRKVK 378
+ L + A CYGF+NLQN+VRK++
Sbjct: 471 SQSSILFRGAQCYGFRNLQNLVRKLQ 496
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI 421
Y +VEVMACPSGC+NGGGQI+P P QS ++ ++ T+
Sbjct: 583 YDYVEVMACPSGCVNGGGQIRP-PTQSDVDVTRSSTTV 619
>gi|400602779|gb|EJP70377.1| iron only hydrogenase large subunit domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 614
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 161/517 (31%), Positives = 237/517 (45%), Gaps = 128/517 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP--------------DKPQVSTSSKQQAE 50
S L DL+DFIAP C+ ++ D S S+ Q
Sbjct: 1 MSAILSTDDLNDFIAPGVACIKPIETLPSAPAPPPPSSSSEAQVILDGDSRSASALQPPP 60
Query: 51 P-VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG-------------------- 89
P +ISL DCLACSGC+TSAE V++ QS E LS ++
Sbjct: 61 PPAEISLTDCLACSGCVTSAEAVLVSLQSHAEVLSTLDSAPSLRVVVDPSTGARGGQRYT 120
Query: 90 ---------KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFL---------KSLGVK 129
K ++ S+SPQ+RASLA G I + L T L S G +
Sbjct: 121 VSGLDNPDAKLLVASVSPQTRASLAAACGPGIGEARAGAMLETLLMGEAGLAGGGSHGSR 180
Query: 130 --SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL------------PMLSSAC 175
+ DT+ +R++T + + +E S + S SS P+L+S+C
Sbjct: 181 FAWVVDTNTAREMTHVLSADEVFGSGSDSNSNSHLSSTSSSASSSPTAAPAKKPILASSC 240
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+CYAEK ++LP++S VKSPQ +G +K + + LG P I+H+ VMPC+DKK
Sbjct: 241 PGWVCYAEKTH-PHVLPHLSRVKSPQALMGTLLKTSLSKALGIPPSRIWHLAVMPCFDKK 299
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP---- 291
LEA+RE+ ++ ++ G + +VD V+T+ EVL L + + ++F L + P
Sbjct: 300 LEASREELTDEVWARSGR---PGRGVRDVDCVITSKEVLMLAESRGLDFFKLSQEPPRPA 356
Query: 292 --------LDKMLTNVDDE----------GHLYGVAGSSGGYAETVFRHAAKTLFG---K 330
L K L D + + AGSSGG + + A G +
Sbjct: 357 MAPFPDPTLHKFLFRQDAQLPSPSSSVSVPNTPLAAGSSGGLLYHILQSRAAQTPGSEIQ 416
Query: 331 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK--------- 381
+I+G RN+D E + V+G+ + K A YGF+N+QN+VR++K +
Sbjct: 417 IIKG-------RNADVVEYVVSVQGEAVFKAARYYGFRNIQNLVRRLKPARPSRMPGGKP 469
Query: 382 --------------CDYQFVEVMACPSGCLNGGGQIK 404
+Y +VEVMACP GC NGGGQIK
Sbjct: 470 FGSARRPTGGKSATLEYSYVEVMACPGGCTNGGGQIK 506
>gi|355628603|ref|ZP_09049864.1| hypothetical protein HMPREF1020_03943 [Clostridium sp. 7_3_54FAA]
gi|354819674|gb|EHF04113.1| hypothetical protein HMPREF1020_03943 [Clostridium sp. 7_3_54FAA]
Length = 582
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 207/413 (50%), Gaps = 40/413 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C++C CI T L+++ + F + + K VI+ +P RA+L E FG P+
Sbjct: 192 CVSCGQCIAVCPTGALQEKDFTDKVFAAIADPAKHVIVQTAPAVRAALGEEFGY-PIGTG 250
Query: 117 --KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ + LK LG +FDT S DLT++E +EF+ R + + LP+++S
Sbjct: 251 LEGKMVSALKMLGFDKVFDTDFSADLTIMEEAHEFLDRVQ---------NGGVLPLITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GA K + QK G P +I V++MPC K
Sbjct: 302 SPGWIKYCEHYFPD-MTKNLSSCKSPQQMFGAIAKSYYAQKAGIDPKDIVSVSIMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D Q +P+VD LTT E+ +I+ + F AL ++ D
Sbjct: 361 KFEVGR-------DHQAAN------GVPDVDIALTTRELARMIRKAGIKFTALPDASYDS 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEV 353
L ++G ++GG E R A +TL G+ ++ L+F +R + +E V
Sbjct: 408 PLGLSTGAATIFG---ATGGVMEAALRTAVETLTGEELKA-LDFAEVRGTAGIKEATYNV 463
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + K A+ G N + ++ KVK + Y F+E+M CP GC+NGGGQ + +PG
Sbjct: 464 AGMDV-KVAVASGLNNARELLNKVKSGEASYHFIEIMGCPGGCVNGGGQPQ-QPGYVRDT 521
Query: 414 L-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ I+ L L N A+ + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 522 VDIRGLRAQVLYNSDKANTIRKSHENPAIKELYASFLGEPGSEKAHHLLHTSY 574
>gi|387818042|ref|YP_005678387.1| periplasmic [Fe] hydrogenase large subunit [Clostridium botulinum
H04402 065]
gi|322806084|emb|CBZ03651.1| periplasmic [Fe] hydrogenase large subunit [Clostridium botulinum
H04402 065]
Length = 577
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSRVWDALSQ--KDKVVIVQTAPAIRATLGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 IAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++G G V A +T + V +G L EF +R D RE
Sbjct: 410 DNPLGESTGASVIFGTTGG-------VMEAALRTAYEWVTKGTLKDVEFIEVRGEDGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|119194505|ref|XP_001247856.1| hypothetical protein CIMG_01627 [Coccidioides immitis RS]
gi|121927206|sp|Q1E736.1|NAR1_COCIM RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|392862908|gb|EAS36410.2| cytosolic Fe-S cluster assembly factor NAR1 [Coccidioides immitis
RS]
Length = 618
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 232/489 (47%), Gaps = 95/489 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNC---VVSLKKATFKNPDKPQVSTSSKQQAE---PVKISLKD 58
S L DL+DFI+P C V +L + ++ +V+T K AE P +ISL D
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAKSERDESAYEVTTEDKVAAENPSPAQISLTD 60
Query: 59 CLACSGCITSAETVMLEKQS---------------LDEFLSNINKG-----KAVIISLSP 98
CLACSGC+TSAE V++ QS +D F + + G + + S+SP
Sbjct: 61 CLACSGCVTSAEAVLISLQSHAEVLNTLDAYPELRVDGFRNGVQNGATGDARIFVASVSP 120
Query: 99 QSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTLIEACN 147
Q RAS+A +G+S + + FL G + DT+ RD+ L +
Sbjct: 121 QVRASMAATYGVSEKEAGYMIEQFLSGPQGLRAGGQHGSGFTWVVDTNVIRDVVLELTTD 180
Query: 148 EFIA-RYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E A R K + E + +P +LSSACPGWICYAEK ++LP++S +KSPQ
Sbjct: 181 EVTASRAKFDSTATSESAEFPIPRQPILSSACPGWICYAEKT-HPHVLPHLSRLKSPQAL 239
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQEETYRDEGLE 260
G IK + ++L P I+H+ +MPC+DKKLEA+R+ D +Q + + + ++
Sbjct: 240 TGTFIKTILSKRLNVPPSRIWHLAIMPCFDKKLEASRQELTDASWQT-TNHDIFASPAMD 298
Query: 261 IP--EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV---------- 308
P +VD V+T+ E+L L + ++ L +PL T + +
Sbjct: 299 QPIRDVDCVITSRELLMLASSRNISLLTLPLTPLPSSFTTPFPDPRIAQFLFPKHHASNQ 358
Query: 309 ---AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFAL 363
+G SGGY H T ++ + RN+D + L G+ ++K A
Sbjct: 359 SVSSGPSGGY----LHHLLTTHQALHPNSTIQAQRGRNADVIDYTLVSAETGRPIIKAAR 414
Query: 364 CYGFQNLQNIVRKVKMRKC----------------------------DYQFVEVMACPSG 395
YGF+N+QN+VRK+K K DY ++EVMACP G
Sbjct: 415 YYGFRNIQNLVRKLKPAKTSRLPGARAAVSRRTGISASHTAAGGGVSDYAYIEVMACPGG 474
Query: 396 CLNGGGQIK 404
C NGGGQI+
Sbjct: 475 CTNGGGQIR 483
>gi|320591162|gb|EFX03601.1| iron-sulfur cluster assembly associated protein [Grosmannia
clavigera kw1407]
Length = 605
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 156/503 (31%), Positives = 224/503 (44%), Gaps = 116/503 (23%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQ------------AEPV 52
S L DL+DFI+P C+ K P P S S + A P
Sbjct: 1 MSAILSADDLNDFISPGVACI----KPVETLPSAPAASASELEHEVIRDGLPGAGGAPPA 56
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV-------------------- 92
ISL DCLACSGC+TSAE V++ QS E L ++ G A+
Sbjct: 57 SISLTDCLACSGCVTSAEAVLVSLQSHKELLRALDAGPALELLPSSTSYVVQGLDDPDHP 116
Query: 93 -----IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL--------------GVKSI 131
+ S+SPQ+RA+LA G +S Q L L G +
Sbjct: 117 DRLLYVASVSPQTRANLATACGPGVSAQQAGHMLDHLLSGPTGLRASSHGNGNGNGFAWV 176
Query: 132 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 191
DT+ +R+ TL+ +E + S +L L+S+CPGWICYAEK ++L
Sbjct: 177 VDTNAAREATLVLGADEVAQFHPSPPTSTSSSPPKAL--LTSSCPGWICYAEKTH-PHVL 233
Query: 192 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV-FQLDSQ 250
++S VKSPQ G +K + + LG P I+HV +MPC+DKKLEA+RE+ D
Sbjct: 234 GHLSRVKSPQALTGTLLKTTLSRTLGIPPGRIWHVAIMPCFDKKLEASREELTDAAWDGS 293
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL------------------ 292
++ + G+ +VD V+T+ EVL L + + ++F +L ++PL
Sbjct: 294 KDGHGHHGVR--DVDCVITSKEVLMLAESRGIDFFSLPKTPLSPLLQDKCQPSSSRLPFP 351
Query: 293 ----DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
D+ L AGSSGG V +++ + L+ RN D E
Sbjct: 352 DAVLDRFLFPPRQRSAPTSAAGSSGGNLHFVL----QSVLAQNPGSSLQTNRGRNVDVVE 407
Query: 349 VALEVEG--KTLLKFALCYGFQNLQNIVRKVKMRK------------------------- 381
A+ G + L K A YGF+N+QN+VR+++ +
Sbjct: 408 YAITAPGLDEPLFKAARYYGFRNIQNLVRRLRPARPSRLPGGRPVGSAARRVPTGKAGAG 467
Query: 382 CDYQFVEVMACPSGCLNGGGQIK 404
D+ +VEVMACP GC NGGGQIK
Sbjct: 468 LDFAYVEVMACPGGCTNGGGQIK 490
>gi|315042750|ref|XP_003170751.1| LET1 [Arthroderma gypseum CBS 118893]
gi|311344540|gb|EFR03743.1| LET1 [Arthroderma gypseum CBS 118893]
Length = 602
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 226/489 (46%), Gaps = 96/489 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP-QVSTSSK---QQAEPVKISLKDCL 60
S L DL+DFI+P C+ ++ K + +V+T K Q P +ISL DCL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVEALPKKQEENLYEVTTEDKLEEQNPPPAQISLTDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----------------GKAVIISLSPQSRASL 104
ACSGC+TSAE V++ QS E L+ ++ GK + S+SPQ RASL
Sbjct: 61 ACSGCVTSAEAVLVSLQSHAEVLNTLDANPEIRIDGRDGIEVGDGKIFVASVSPQVRASL 120
Query: 105 AEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSRDLTL---IEACNEFI 150
A +GIS + FL+ G + DT+ R L E +
Sbjct: 121 AATYGISEKNAGYIIEQFLRGPCGLRAGGQHGSGFSWVADTNIMRQAVLELSTAEVTESL 180
Query: 151 ARYKQSQESDDERSNS--SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
A + D+ S S P+L+S+CPGWICYAEK ++LPY+S +KSPQ G +
Sbjct: 181 ASSTSTTSHDESGKFSIPSRPVLASSCPGWICYAEKTH-PHVLPYLSRLKSPQALTGTFL 239
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEVDSV 267
K I +KL P I+H+ +MPC+DKKLEA+R++ S DEG + +VD V
Sbjct: 240 KTIISKKLNISPSCIWHLAIMPCFDKKLEASRQELTDV--SWRGNASDEGSSPVRDVDCV 297
Query: 268 LTTGEVLDLIQLKAVNFEALEESPLDKML--------------TNVDDEGHLYGVAGSSG 313
+T+ E+L L + ++ +L PL L TN AG SG
Sbjct: 298 ITSKELLMLASSRNISLPSLPLEPLPTNLSTPFPDQTIAQFLSTNNTLHSAQPAAAGPSG 357
Query: 314 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQNLQN 372
GY H T K + ++ + RN+D E L G+ ++K A YGF+N+QN
Sbjct: 358 GY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSATGEPIIKAARYYGFRNIQN 413
Query: 373 IVRKVKMRKC-------------------------------------DYQFVEVMACPSG 395
+VRK+K + ++ +VEVMACP G
Sbjct: 414 LVRKLKPARASRLPGSRAMQPNPNGPGARARPAPIANGKPGAPAAPSEFAYVEVMACPGG 473
Query: 396 CLNGGGQIK 404
C NGGGQI+
Sbjct: 474 CTNGGGQIR 482
>gi|392392257|ref|YP_006428859.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
gi|390523335|gb|AFL99065.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
Length = 575
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 211/419 (50%), Gaps = 43/419 (10%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGIS 111
+S + C+ C CI L E+ D+ S + + V++ +P R +L E FG+
Sbjct: 185 LSGRSCINCGQCIKICPVGALQERDDSDKVWSALEDPELHVVVQTAPAVRVALGEEFGLP 244
Query: 112 -PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V K+ T L+ LG +FDT+ S DLT++E E + R +Q LP+
Sbjct: 245 VGINVRGKMVTALRRLGFDKVFDTTFSADLTIMEEGTELLQRIQQ---------GGKLPL 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S PGW+ + E + L +SS KSPQQ GA K + QK G P +I+ V+VMP
Sbjct: 296 ITSCSPGWVKFCEHNFTDF-LDNLSSCKSPQQMFGAVAKSYYPQKAGLDPKKIFVVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+ + Q +VD+V+TT E+ +I+ +NF LE+S
Sbjct: 355 CTAKKYEADREEMMVQGRK-------------DVDAVITTRELAKMIKQAGINFNDLEDS 401
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREV 349
D++L G ++ ++GG E R A L G+ +E +E+ +R +E
Sbjct: 402 EYDELLGTSTGAGVIF---ANTGGVMEAALRTVADILTGQDLEA-IEYSAVRGFEGIKEA 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ ++G +K A+ +G N ++ +++ +Y F+EVM CP GC+NGGGQ P
Sbjct: 458 TVHIDGLE-IKAAVVHGTGNAAQLLDRIREGTANYHFIEVMGCPGGCINGGGQ----PIL 512
Query: 410 SPKELIKTLETIYLENVMLAD-------PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K + + + + D +NP ++ +Y+E+LE+PGS ++ + +HT Y
Sbjct: 513 MDKSRTQEVNRLRAAGIYALDRQAVKRKSHENPEIKKIYEEYLEKPGSHRSHELLHTHY 571
>gi|153940304|ref|YP_001391107.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
gi|384462136|ref|YP_005674731.1| iron hydrogenase 1 [Clostridium botulinum F str. 230613]
gi|152936200|gb|ABS41698.1| iron hydrogenase 1 [Clostridium botulinum F str. Langeland]
gi|295319153|gb|ADF99530.1| iron hydrogenase 1 [Clostridium botulinum F str. 230613]
Length = 577
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 210/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKVVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++ G++GG E R T + V +G L EF +R D RE
Sbjct: 410 DNPLGQSTGASVIF---GTTGGVMEAALR----TAYEWVTKGTLKDVEFIEVRGEDGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|418046137|ref|ZP_12684231.1| hydrogenase, Fe-only [Thermotoga maritima MSB8]
gi|351675690|gb|EHA58850.1| hydrogenase, Fe-only [Thermotoga maritima MSB8]
Length = 582
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 216/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E ++ L + K K +++ +P R ++ E FG +P +
Sbjct: 190 DCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTI 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 250 STGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 303 CPGWVNLVEK-VYPELRTRLSSAKSPQGMLSAMVKTYFAEKLGVKPEDIFHVSIMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 362 KDEALRKQLMVN-------------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDA 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + + F+ +R RE +++
Sbjct: 409 PLGISTGAAALFGV---TGGVMEAALRTAYELKTGKALP-KIVFEEVRGLKGVREAEIDL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + + A+ +G N++N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 465 DGKKI-RIAVVHGTANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEI 520
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E + L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 521 LRKRAEAIYTIDERMTLRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 570
>gi|357056152|ref|ZP_09117207.1| hypothetical protein HMPREF9467_04179 [Clostridium clostridioforme
2_1_49FAA]
gi|355381400|gb|EHG28526.1| hypothetical protein HMPREF9467_04179 [Clostridium clostridioforme
2_1_49FAA]
Length = 581
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 46/416 (11%)
Query: 59 CLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L ++ + D F + + K VI+ +P RA L E FG+ P+
Sbjct: 191 CVSCGQCIAVCPTGALTEKDYTADVFAAIADPKKHVIVQTAPAVRAGLGEEFGL-PIGTD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT+ S DLT++E +EFI R + + LP+++S
Sbjct: 250 VEGKMAAALRRLGFDKVFDTNFSADLTIMEEAHEFIDRVQ---------NGGVLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E + +SS KSPQQ GA K + +K G P +I V+VMPC K
Sbjct: 301 SPGWVKYCEHYFPD-MTENLSSCKSPQQMFGAIAKSYYAEKAGIDPKDIVSVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RED ++ +P+VD +TT E+ +I+ + F L + D
Sbjct: 360 KFEIGRED-------------EDANGMPDVDISITTRELARMIKKAGIRFLDLPDEEFDA 406
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVA 350
L G G A G++GG E R A +TL G+ + +F +R + +E
Sbjct: 407 PL------GLGTGAAVIFGATGGVMEAALRTAVETLTGEELP-KPDFTEVRGTKGIKEAT 459
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + +Y F+E+M CP GC+NGGGQ + +PG
Sbjct: 460 YNVAGMEV-KIAVASGLGNARELLNKVKSGEANYHFIEIMGCPGGCVNGGGQPQ-QPGHV 517
Query: 411 PKEL-IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+ L L ++ A+P + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 518 RNTTDIRGLRAKVLYDIDTANPIRKSHENPAIKELYATYLGEPGSEKAHHLLHTTY 573
>gi|317057597|ref|YP_004106064.1| hydrogenase, Fe-only [Ruminococcus albus 7]
gi|315449866|gb|ADU23430.1| hydrogenase, Fe-only [Ruminococcus albus 7]
Length = 580
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 205/414 (49%), Gaps = 43/414 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI S + EK S + I + K V+ +P RA+L E FG +P+
Sbjct: 191 CVGCGQCIVSCPVGALTEKSSEKKVWDAIADPEKKVVFFTAPSIRATLGEEFG-NPVGTN 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG +IF+ + DLT++E NE I R + + +LPM +S
Sbjct: 250 VEGKMVAAIRRLGDVNIFNMDVTADLTIMEEANELIERIQ---------NKGTLPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + E + LP++SS KSPQQ GA +K + CQK G P ++ V+V+PC K
Sbjct: 301 CPGWVKFCEHFYPDF-LPHLSSCKSPQQMFGALLKSYYCQKNGIDPKNLFVVSVIPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+ + Y D VD LTT E+ +I+ ++F AL + D
Sbjct: 360 KFEVTREE------QRNGDYDD-------VDVALTTRELGRMIREAGIDFNALPDEKFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
G ++G ++GG E R AA L GK LEF +R + + A
Sbjct: 407 PFEIASGAGAIFG---ATGGVMEAALRTAAVKLDGKCEP--LEFHDVRGTKGLKEATYTV 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G +K A+ G N + I+ + + DYQFVE+MACP GC+NGGGQ P + +
Sbjct: 462 GGVTVKVAVASGLANAREIIDGILSGERDYQFVEIMACPGGCINGGGQ--PVQSDAVRNF 519
Query: 415 IKTLETIYLENVMLAD-------PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L+ I + + AD ++P+ LY E+ E PG+ A K++HT Y
Sbjct: 520 VD-LKAIRAKALYDADSSMKLRMSHESPVCDMLYKEFFEAPGAHNAHKYLHTTY 572
>gi|168180425|ref|ZP_02615089.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
gi|421837509|ref|ZP_16271670.1| iron hydrogenase 1 [Clostridium botulinum CFSAN001627]
gi|182668697|gb|EDT80675.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
gi|409740335|gb|EKN40640.1| iron hydrogenase 1 [Clostridium botulinum CFSAN001627]
Length = 577
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 210/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKVVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++ G++GG E R T + V +G L EF +R D RE
Sbjct: 410 DNPLGESTGASVIF---GTTGGVMEAALR----TAYEWVTKGTLKDVEFIEVRGEDGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|403252994|ref|ZP_10919299.1| NADP-reducing hydrogenase, subunit D [Thermotoga sp. EMP]
gi|402811756|gb|EJX26240.1| NADP-reducing hydrogenase, subunit D [Thermotoga sp. EMP]
Length = 582
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 216/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E ++ L + K K +++ +P R ++ E FG +P +
Sbjct: 190 DCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTI 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 250 STGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 303 CPGWVNLVEK-VYPELRTRLSSAKSPQGMLSAMVKTYFAEKLGVKPEDIFHVSIMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 362 KDEALRKQLMVN-------------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDA 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + + F+ +R RE +++
Sbjct: 409 PLGISTGAAALFGV---TGGVMEAALRTAYELKTGKTLP-KIVFEEVRGLKGVREAEIDL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + + A+ +G N++N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 465 DGKKI-RIAVVHGTANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEI 520
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E + L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 521 LRKRAEAIYTIDERMTLRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 570
>gi|226949091|ref|YP_002804182.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto]
gi|226843824|gb|ACO86490.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto]
Length = 577
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 139/416 (33%), Positives = 210/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKVVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++ G++GG E R T + V +G L EF +R D RE
Sbjct: 410 DNPLGESTGASVIF---GTTGGVMEAALR----TAYEWVTKGTLKDVEFIEVRGEDGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|291544587|emb|CBL17696.1| hydrogenases, Fe-only [Ruminococcus champanellensis 18P13]
Length = 582
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 205/416 (49%), Gaps = 46/416 (11%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK S E L+ I + K VI+ +P RA L E FG P+
Sbjct: 194 CVSCGQCIAVCPTGALAEKDSTSEVLAAIADPSKHVIVQTAPAVRAGLGECFGY-PIGTD 252
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E EFI R + + LP+++S
Sbjct: 253 VEGKMVAALRRLGFDKVFDTDFAADLTIMEEGTEFIDRLQ---------NGGKLPLITSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + +SS KSPQQ GA K + +K+G P ++ V+VMPC K
Sbjct: 304 SPGWIKFCEHYYPD-MTENLSSCKSPQQMFGAVAKSYYAEKMGIDPKDMVVVSVMPCTAK 362
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D +P+VD LTT E+ +IQ +NF+AL + D
Sbjct: 363 KFEIGRDDQAAN-------------GVPDVDIALTTRELGRMIQRAGINFQALLDEEFDM 409
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++G ++GG E R + L K + L+F+ +R + +E V
Sbjct: 410 PLGLSTGAGVIFG---ATGGVMEAALRTVVEVLEKKELP-SLDFQEVRGMEGIKEATYNV 465
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T +K A+ G N + ++ KV + DY F+E+M CP GC+NGGGQ P SP E
Sbjct: 466 AG-TDVKLAVASGLANARMLLDKVNSGEADYHFIEIMGCPGGCINGGGQ----PHVSPAE 520
Query: 414 ------LIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K +Y + A +N V+ LYD +LE+PGS KA + +HT Y
Sbjct: 521 RNFGDYRAKRASVLYSNDAAKAVRKSHENAGVKELYDTYLEKPGSHKAHQLLHTTY 576
>gi|220931030|ref|YP_002507938.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
gi|219992340|gb|ACL68943.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
Length = 666
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 215/411 (52%), Gaps = 37/411 (9%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV 115
DC+AC C+ T L K + IN K V++ ++P R ++ E FG+ P ++
Sbjct: 188 DCVACGQCVAVCPTGALTIKSDISRVWEAINDPAKTVVVQIAPAVRVAIGEEFGMEPGEI 247
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+L LK LG +FDTS + DLT++E EFI R+K+ ++ LP +S
Sbjct: 248 QMGQLVAALKRLGFDKVFDTSFAADLTVMEETAEFIERFKEGKK---------LPQFTSC 298
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ YAE+ + L +SS KSPQQ G+ K Q LG P+++ V++MPC K
Sbjct: 299 CPAWVKYAEEYAQDF-LDNLSSCKSPQQMFGSVAKRFYSQDLGIDPEDMVVVSIMPCTAK 357
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R +F+ +P+VD V+TT EV +I+ + F L LD
Sbjct: 358 KFEAQRPEFITD-------------GVPDVDVVITTQEVASMIKKSGLVFSELGIESLDM 404
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++GV +GG +E V R+A + + G ++ +EFK +R D +E +E+
Sbjct: 405 PLGFSTGAGVIFGV---TGGVSEAVLRNAYEKITGDNLD-DVEFKEVRGFDGIKEAEVEL 460
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GKT ++ A+ +G N+ ++++ +K + +Y +EVMACP GC+ GGGQ P + +
Sbjct: 461 DGKT-VRLAVVHGLSNVGDLIKAIKKGEKEYDLIEVMACPGGCIGGGGQPTPNNTEVRE- 518
Query: 414 LIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K + +Y + + L +NP+V Y W + S+ KH+HT Y
Sbjct: 519 --KRAQGMYNCDKLSALHKSQENPMVNDFYRRWFGEENSDVTHKHLHTSYE 567
>gi|335048205|ref|ZP_08541225.1| ferredoxin hydrogenase [Parvimonas sp. oral taxon 110 str. F0139]
gi|333758005|gb|EGL35563.1| ferredoxin hydrogenase [Parvimonas sp. oral taxon 110 str. F0139]
Length = 574
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 218/411 (53%), Gaps = 38/411 (9%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C C++ T L + S + ++ ++K K VI+ +P R +L E FG+ P V
Sbjct: 193 NCTFCGQCLSVCPTGALAEVSSIQQVTRALMDKTKTVIVQTAPAVRVALGEEFGMEPGTV 252
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ T L+++G +FDT + DLT +E EF++R+++ + +LP+L+S
Sbjct: 253 VTGKMVTALRNIGFDYVFDTDFAADLTTMEEAKEFVSRFEKGE---------NLPILTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L SS KSP + G+ K + +K+ P +I V+VMPC K
Sbjct: 304 CPSWVNFIENNF-PEMLHIPSSCKSPHEMFGSVAKSYFAEKMNIDPKDIVVVSVMPCVAK 362
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E+AR + ++GL +VD VL+T E+ +I+ A++F LE+S D
Sbjct: 363 KYESARPEL-----------SNKGLS--DVDYVLSTREIAHMIKDCAMDFPKLEDSDFDS 409
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG--HLEFKTIRNSDFREVALE 352
++ G ++G S+GG E R A + G+ ++ + E K +R F+E +E
Sbjct: 410 IMGESSGAGVIFG---STGGVMEAALRTAYNMITGEDLQNVEYTELKDLRG--FKEAEIE 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++GK + K A+ G N + ++ +K ++ Y +E+MACP GC+ GGGQ P
Sbjct: 465 IKGKKI-KAAVVSGLGNARKLLNSIKSKEKTYDIIEIMACPGGCIAGGGQ--PFIHGDTD 521
Query: 413 ELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K + I+ E N + +KNP ++ +Y+E+L +PG E+A +HT Y
Sbjct: 522 IIEKRMHGIHREDRNKSIRLSYKNPSIQKIYNEYLGEPGGERAHHLLHTTY 572
>gi|219668075|ref|YP_002458510.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
gi|219538335|gb|ACL20074.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
Length = 1150
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 218/424 (51%), Gaps = 44/424 (10%)
Query: 58 DCLACSGCITSAETVMLEKQS-LDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV 115
DC++C C+ + L+ +S + IN GK + ++P R+ ++ +G+S +
Sbjct: 671 DCVSCGQCVNACPCGALDYRSEIGRVFRAINDPGKTTVAFVAPAVRSVVSSQYGVSYQEA 730
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ + LK +G +FD + + DLT++E EF+ R + S+ +P +S C
Sbjct: 731 SRFIAGLLKKIGFDKVFDFTFAADLTIVEETTEFLTRLQ---------SHKPIPQFTSCC 781
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E++ I+PY+SS KSPQ +GAT+K+H + P ++Y V+++PC KK
Sbjct: 782 PGWVNFVERRYPE-IIPYLSSCKSPQMMMGATVKNHFTELTEIDPKDLYVVSIVPCIAKK 840
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F R EG I +VD+VLT+ E+L++ +K + +E +
Sbjct: 841 YEAARPEF-----------RSEG--IRDVDAVLTSTEMLEMADIKLIEPADVEPQDFCEP 887
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
V G L+ G+SGG AE R A + L G+V+ L+++ +R +E A+E +
Sbjct: 888 YKRVSGAGILF---GASGGVAEAALRMAVEKLTGEVLTDQLDYQEVRGLQGIKEAAVEAK 944
Query: 355 GKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
GK + A+ G N++ I+ K ++ + Y +EVMACP GC+ G G P E
Sbjct: 945 GKK-VNVAVISGLHNVEPILEKIIEGMEVGYDLIEVMACPGGCICGAGHPVP-------E 996
Query: 414 LIKTLETI--YLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
I TLE L N+ ++ NP + LYDE+ + S A K +HT Y V +
Sbjct: 997 KIDTLEKRQQVLVNIDQTSRYRKSQENPDILRLYDEYYGEANSPLAHKLLHTHYEAVKRE 1056
Query: 468 ITAQ 471
A+
Sbjct: 1057 PVAK 1060
>gi|343429622|emb|CBQ73195.1| related to NAR1-similarity to human nuclear prelamin A recognition
factor [Sporisorium reilianum SRZ2]
Length = 727
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 214/462 (46%), Gaps = 112/462 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKA---------------------------TFKNPD 37
FS L + DL+D++ PSQ C+ ++ A ++
Sbjct: 3 FSGALTLTDLNDYLGPSQACIKPVEGADAPSSLEAAPPEAAASASTQIAIDHDGSYYESA 62
Query: 38 KPQVSTSSKQQA----EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI------N 87
P ST+SK + E +ISL DCLACSGC+TSAE+V++ QS +E I +
Sbjct: 63 APSTSTASKPRQRTKLETAEISLNDCLACSGCVTSAESVLITMQSQEEMRRAIAEIAQSD 122
Query: 88 KGKAVIISLSPQSRASLAEHFGIS--------PLQVF-KKLTTFLKS-LGVKSIFDTSCS 137
+ S+S QS ASL+ + PL+V ++ FL++ G ++DT+ +
Sbjct: 123 SPSLRVASISTQSLASLSAKYSFQQQSASAALPLRVLLHRIAHFLQTTFGFDYVYDTTFA 182
Query: 138 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 197
R + L E EF R R ++SLPML+SACPGWICYAEK G +LPYIS+
Sbjct: 183 RHIALKEHQREFFQR----------REDASLPMLASACPGWICYAEKTHGE-LLPYISTT 231
Query: 198 KSPQQTIGATIKHHICQKLGF-RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 256
KSPQQ G K + Q+LG YHVTVMPCYDKKLEA+R DF D
Sbjct: 232 KSPQQVAGVIAKRFLPQRLGLIASATTYHVTVMPCYDKKLEASRPDFY-----------D 280
Query: 257 EGLEIPEVDSVLTTGEVLDLIQLKAVNF----------EALEESPLDKMLTNVDDEGHLY 306
+ EVD VLTTGE LD + L NF EAL+ D L L
Sbjct: 281 DITSTKEVDCVLTTGE-LDKLMLDE-NFDICAPVPGEHEALQHDIADSSLQQALPASMLP 338
Query: 307 GV-------AGSSGGYAETVFR---------HAAKTLFGKVIEG---HLEFKTIRNSDFR 347
+ SSGGY + R H + +G L+ + IR DF
Sbjct: 339 HIPQLLDQPGSSSGGYLFALMRAVWLDWLAQHWHRFPASVREQGLLPKLDVRVIRTVDFT 398
Query: 348 EVALEVEGK-----------TLLKFALCYGFQNLQNIVRKVK 378
E L + L + A CYGF+NLQN+VRK++
Sbjct: 399 EYVLRAPAQLEQDAASSHSSILFRGAQCYGFRNLQNLVRKLQ 440
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 384 YQFVEVMACPSGCLNGGGQIKP 405
Y +VEVMACPSGC+NGGGQI+P
Sbjct: 509 YDYVEVMACPSGCVNGGGQIRP 530
>gi|15642974|ref|NP_228016.1| NADP-reducing hydrogenase, subunit D [Thermotoga maritima MSB8]
gi|4980698|gb|AAD35293.1|AE001705_4 NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima
MSB8]
Length = 608
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 216/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E ++ L + K K +++ +P R ++ E FG +P +
Sbjct: 216 DCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTI 275
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 276 STGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 328
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 329 CPGWVNLVEK-VYPELRTRLSSAKSPQGMLSAMVKTYFAEKLGVKPEDIFHVSIMPCTAK 387
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 388 KDEALRKQLMVN-------------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDA 434
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + + F+ +R RE +++
Sbjct: 435 PLGISTGAAALFGV---TGGVMEAALRTAYELKTGKALP-KIVFEEVRGLKGVREAEIDL 490
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + + A+ +G N++N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 491 DGKKI-RIAVVHGTANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEI 546
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E + L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 547 LRKRAEAIYTIDERMTLRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 596
>gi|167752244|ref|ZP_02424371.1| hypothetical protein ALIPUT_00486 [Alistipes putredinis DSM 17216]
gi|167660485|gb|EDS04615.1| hydrogenase, Fe-only [Alistipes putredinis DSM 17216]
Length = 589
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 218/426 (51%), Gaps = 42/426 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I +C+ C C+ T L E ++ E + + + GK V++ +P R +L + FG+
Sbjct: 190 ILTTNCVNCGQCVAVCPTSALSENSNIREVMQALADPGKTVVVQTAPAVRVALGQDFGLE 249
Query: 112 PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
V K+TT L+ LG +FDT + DLT++E E + R + D +P++
Sbjct: 250 GRSVTGKMTTALRRLGFDYVFDTDFAADLTIMEEGTELLQRLNKYLAGD---RTVKIPLM 306
Query: 172 SSACPGWICYAEK---QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
+S CPGW+ + EK +LG +S+ KSPQQ GA K+++ KLG V+V
Sbjct: 307 TSCCPGWVSFMEKHFPELGE----NLSTAKSPQQMFGAIAKNYLAPKLGIDRRNFIVVSV 362
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EAAR +F D P+V+ +TT E+ +I+ +NF+ LE
Sbjct: 363 MPCVAKKSEAARPEFGKDGD-------------PDVNISITTRELAHMIRFANMNFDELE 409
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFR 347
ES D+ L G ++ G++GG E R A + K + L+F +R + R
Sbjct: 410 ESDFDRPLGESTGAGVIF---GTTGGVIEAAVRTAYEIQTKKTLP-KLDFTELRGLAGIR 465
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
++ +G +K + +G N + +V +++ + Y +E+MACP GC+NGGGQ P
Sbjct: 466 SATIDFDG-VPVKIGIAHGLGNARRLVEEIRAGRSPYHAIEIMACPGGCINGGGQ--PYH 522
Query: 408 GQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH- 462
+ + L + E +Y E+ A P + NP +++LY+E+L +P + + +HT Y+
Sbjct: 523 RGNEELLKRRAEALYAEDA--AKPLRKSHENPDIQALYEEFLGEPCGPLSHELLHTRYYD 580
Query: 463 --PVVK 466
PVV+
Sbjct: 581 RKPVVE 586
>gi|148379807|ref|YP_001254348.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
gi|153932525|ref|YP_001384105.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
gi|153935257|ref|YP_001387645.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
gi|148289291|emb|CAL83387.1| putative catalytic subunit of iron-only hydrogenase [Clostridium
botulinum A str. ATCC 3502]
gi|152928569|gb|ABS34069.1| iron hydrogenase 1 [Clostridium botulinum A str. ATCC 19397]
gi|152931171|gb|ABS36670.1| iron hydrogenase 1 [Clostridium botulinum A str. Hall]
Length = 577
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 208/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKIVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++G G V A +T + V +G L EF +R D RE
Sbjct: 410 DNPLGESTGASVIFGTTGG-------VMEAALRTAYEWVTKGTLKDVEFIEVRGEDGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|433654713|ref|YP_007298421.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433292902|gb|AGB18724.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 581
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 212/415 (51%), Gaps = 36/415 (8%)
Query: 55 SLKD--CLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGI 110
SL D C++C CI + + ++ + + + +++ K V++ +P R +L E FG+
Sbjct: 185 SLNDSPCISCGQCIEACPVGAIYEKDHTKMVYDALLDEKKYVVVQTAPAVRVALGEEFGM 244
Query: 111 SPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ K+ + LK LG +FDT + DLT+IE NE + R + LP
Sbjct: 245 PYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRINEG---------GKLP 295
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M++S PGWI Y E+ YI +S+ KSP +GA IK + +K G P +I+ V++M
Sbjct: 296 MITSCSPGWINYCERYYPEYI-ENLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIM 354
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E R + +G++ +VD+VLTT E+ +I+ ++F L +
Sbjct: 355 PCTAKKYEIDRPQMIV-----------DGMK--DVDAVLTTRELARMIKQSGIDFVNLPD 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
S D L G ++G ++GG E R A + GK IE + E+K +R + RE
Sbjct: 402 SEYDNPLGESSGAGVIFG---ATGGVMEAALRTVADIVEGKDIE-NFEYKEVRGLEGIRE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ + GK + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P
Sbjct: 458 ANINIGGKEI-KVAIANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPN 516
Query: 409 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K L IY +++ + KNP++ LY E+L P EK+ +HT Y
Sbjct: 517 EKDLVRNKRLNAIYEADKDLPIRKSHKNPMITKLYKEFLISPLGEKSHHLLHTSY 571
>gi|206895600|ref|YP_002246551.1| hydrogenase [Coprothermobacter proteolyticus DSM 5265]
gi|206738217|gb|ACI17295.1| hydrogenase [Coprothermobacter proteolyticus DSM 5265]
Length = 581
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 224/427 (52%), Gaps = 52/427 (12%)
Query: 51 PVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
P +SL D C++C CIT+ T + EK + + +K K V++ +P R +L E
Sbjct: 181 PFYVSLNDSPCISCGQCITACPTGALYEKDHIQRVYRALADKRKHVVVQTAPAVRVALGE 240
Query: 107 HFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
FG+ P+ V K+ L+ LG + +FDT DLT++E +E I R K
Sbjct: 241 EFGM-PVGSIVTGKMVAALRRLGFEVVFDTDFGADLTIMEEGSELIERLKYG-------- 291
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
LPM++S PGWI + EK ++ +S+ KSP +GA IK + +K+G+ P+++Y
Sbjct: 292 -GKLPMITSCSPGWINFCEKYYPDFV-ENLSTCKSPHMMLGALIKTYYAEKMGWNPEDVY 349
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
V+VMPC KK+E R + + +GL+ +VD+VLTT E+ +I+ ++F
Sbjct: 350 VVSVMPCTAKKVEIERPENMH-----------DGLQ--DVDAVLTTRELARMIKEAGIDF 396
Query: 285 EALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
L + D+ L G G A G++GG E R ++ + GK ++ ++F+ +
Sbjct: 397 VNLPDEEFDQPL------GMSTGAAVIFGATGGVMEAALRTVSEIVEGKPLD-KIDFEEV 449
Query: 342 RNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
R D RE + V+G LK A+ G N + ++ K++ + +Y F+E+M CP GC+ GG
Sbjct: 450 RGLDGVREATVTVDGLD-LKLAIVNGTGNAKKLLDKIRSGEAEYHFIEIMGCPGGCITGG 508
Query: 401 GQIKPKPGQSPKEL--IKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GQ P P E+ ++ L + +N+ L +NP ++ +Y+E+L P EK+
Sbjct: 509 GQ----PIHHPNEMAEVRKLRAAAIYQADKNLPLRKSHENPAIKQIYEEYLGHPLGEKSH 564
Query: 455 KHVHTEY 461
+HT Y
Sbjct: 565 HLLHTHY 571
>gi|38146740|gb|AAR11770.1| LET1-like protein, partial [Komagataella pastoris]
Length = 438
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 225/480 (46%), Gaps = 117/480 (24%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA------------EPV 52
S LR DL+DFI P C+ ++ + + ++ S+ A +
Sbjct: 1 MSAILRADDLNDFIMPGVACIKPVESGKKGSGEDLEIQIDSEGNALEVTKEGHERKLDKA 60
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKAVIISLSPQSRASLAEHFG 109
+ISL DCLACSGCITSAE V++ + S E L+ + K + S+S Q+RASLA F
Sbjct: 61 QISLSDCLACSGCITSAEEVLIAQHSHKELLNALETDGNRKVFVASISHQTRASLASAFD 120
Query: 110 ISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
+ + K L LK+ + K + T R L+ I + R S++
Sbjct: 121 VQIEAMDKVLIYLLKNVMKFKYVIGTETGRRLSHIFTTLDLQNRSPHSEK---------- 170
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S CPGW+ YAEK +ILP IS++KS QQ G +K+ + + LG +IYH++V
Sbjct: 171 PLINSTCPGWVLYAEKT-HPFILPRISTIKSTQQITGHLLKNIVSKDLGIEKSQIYHLSV 229
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA-L 287
MPC+DKKLEAAR+ ++P+VD V+T E++ +I+ ++ + L
Sbjct: 230 MPCFDKKLEAARDS-----------------DVPDVDCVITARELVQVIEELNIDLQTIL 272
Query: 288 EESPLDKMLTNVD----------------DEGHLYGVAGSSGGYAETVF-----RHAAKT 326
+ES LD N D ++ L +SGGYA RHA
Sbjct: 273 KESVLD----NTDIYSVYRSSSPPGWYQPEQSWLNNKGSASGGYAMQYLLDVQQRHADSE 328
Query: 327 LFGKVIEGHLEFKTIRNSDFREVALEV-EGKTLLKFALCYGFQNLQNIVRKVKMR----- 380
+ IEG RNSD E L + +G+ + A+ GF+N+QN++RK+K
Sbjct: 329 II--TIEG-------RNSDIYEHRLVLRDGQVVASSAVVNGFRNIQNLIRKLKPNHKATG 379
Query: 381 ------------------------------KCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
KCDY VE+MACP GC+NGGGQI Q+
Sbjct: 380 GGISARRRSRKLKEDQTGDQGQSNAVVDPSKCDY--VEIMACPGGCINGGGQIAAPADQN 437
>gi|257066577|ref|YP_003152833.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548]
gi|256798457|gb|ACV29112.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548]
Length = 577
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 218/409 (53%), Gaps = 37/409 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVF 116
C C C++ T + EK ++ E ++ K VI+ ++P R +L E FGI V
Sbjct: 194 CTFCGQCLSVCPTGALTEKSNIPEVWRALSSDKHVIVQVAPAVRVALGEMFGIRVGTNVE 253
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ T L+ LG +FDT+ + DLT++E NEF+ R K E LP+L+S CP
Sbjct: 254 GKIVTALRRLGFDRVFDTNFAADLTIMEEANEFVDRLKGKGE---------LPILTSCCP 304
Query: 177 GWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
GW+ + E+Q I +P S+ KSP + GA K + +K G P++I V+VMPC KK
Sbjct: 305 GWVNFMEQQFSDMIDIP--STCKSPHEMFGAIAKSYYAEKEGINPEDIVVVSVMPCISKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R++ + E Y D VD+V+TT E+ ++I+ ++F +LE+S D
Sbjct: 363 YEAKRDEL------ENEGYSD-------VDTVITTRELAEMIKEVGIDFASLEDSDFDNP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
+ G ++ G+SGG E R A + K +E +EF +R + +++E
Sbjct: 410 MGESTGAGDIF---GTSGGVIEATVRTAYNIITEKDLE-KVEFYDLRGLRGIKYATVDIE 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ +K A+ G N + ++ K+K ++ +EVMACP GC+ GGGQ P L
Sbjct: 466 GRE-IKIAVANGLGNTRRLLEKLKNKEISLDAIEVMACPGGCIGGGGQ--PYHHGDISIL 522
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K E +Y E+ L ++NP ++ LYDE+L++PGSEKA +HT Y
Sbjct: 523 KKRSEGLYKLDESKKLRKSYENPYIKDLYDEYLKEPGSEKAHNLLHTSY 571
>gi|71027077|ref|XP_763182.1| Fe-hydrogenase [Theileria parva strain Muguga]
gi|68350135|gb|EAN30899.1| Fe-hydrogenase, putative [Theileria parva]
Length = 664
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 155/576 (26%), Positives = 249/576 (43%), Gaps = 173/576 (30%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK-------------------------NPD-- 37
+S ++I L+D++ P + CV+ L K+ K N D
Sbjct: 2 YSNAVKISGLNDYLNPGEECVLPLLKSDNKYEIRLNDKISDSNTQNKSNLPNDLLNNDIY 61
Query: 38 ---KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVII 94
K V+T K + + + L DCL+CSGC+TS+E ++L+ ++ + + + +I
Sbjct: 62 KDNKLNVTTVDKNKK--ITVGLSDCLSCSGCLTSSEEILLKDENHLKVIEKMKNSDFCVI 119
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
S+SPQ+ L+ H+ + + +KL+ + LG K IFD + L L ++ EFI +Y
Sbjct: 120 SISPQTIFMLSSHYNMKAEKALRKLSYLFRFLGAKLIFDIGLAELLALTQSKEEFIYKYN 179
Query: 155 Q-----SQESDDERSNS-------------------SLPMLSSACPGWICYAEKQLGSYI 190
+ SD + +N +LP+++S CPGW YAEK L +
Sbjct: 180 NNTVSSTHSSDLDDTNRMVNGINKDLNNQNYKERRFNLPIITSHCPGWTLYAEKTLDQDL 239
Query: 191 LPYISSVKSPQQTIGATIK------------HHI---------CQKLGFRPD-------- 221
L IS V S Q G +K +HI C F +
Sbjct: 240 LNLISKVPSSQVIQGLLVKILSHTINYYNTIYHINYLKLFSSNCFLNSFLTNVNCNSNSE 299
Query: 222 -------------EIYHVTVMPCYDKKLEAAREDF---------VFQLDSQEETYRD--- 256
++YH++++PCYDKK E R++F ++Q DS T D
Sbjct: 300 NNIINNFKVTNNTKVYHISIVPCYDKKFETIRKEFQFDIKSLFSLYQSDSNPNTSGDPDD 359
Query: 257 -EGLEI-PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT--------------NVD 300
+ LE P VD +L+T ++ +++ + F L+E P D ++ N++
Sbjct: 360 SQALETEPLVDDILSTSDIENILNSLGLKFTQLKEEPPDHLVNFLYYFNKINSIADLNIN 419
Query: 301 -----------DEGHLY------GVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIR 342
D HL G+ SGG+AE +F+H+ K LF V +L+F
Sbjct: 420 HNLTLPNYESRDFNHLMKLIRCSGLYSQSGGFAEEIFKHSCKQLFNVDVDNSNLKFMETI 479
Query: 343 NSDFREVA-LEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-------------------- 381
N+DF+E L+ LL+F + YGF+N+QNI++ +K RK
Sbjct: 480 NNDFKECTLLDSNNNVLLRFIIAYGFRNIQNIIKLLKSRKNTGDSSGNYYQNKSDSSGSS 539
Query: 382 ------CDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
CDY +E+M+CP GC NG GQ P +P
Sbjct: 540 NGSDFVCDY--IELMSCPGGCFNGAGQALQSPQSNP 573
>gi|170756324|ref|YP_001781395.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
gi|429247282|ref|ZP_19210540.1| [Fe] hydrogenase [Clostridium botulinum CFSAN001628]
gi|169121536|gb|ACA45372.1| iron hydrogenase 1 [Clostridium botulinum B1 str. Okra]
gi|428755686|gb|EKX78299.1| [Fe] hydrogenase [Clostridium botulinum CFSAN001628]
Length = 577
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 210/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKVVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++ G++GG E R T + V +G L EF +R + RE
Sbjct: 410 DNPLGESTGASVIF---GTTGGVMEAALR----TAYEWVTKGTLKDVEFIEVRGEEGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKQIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|354544881|emb|CCE41606.1| hypothetical protein CPAR2_801580 [Candida parapsilosis]
Length = 518
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 225/488 (46%), Gaps = 99/488 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-----------------VSLKKATFKNPDKPQVSTSSKQ 47
S L DL+DFI+P C+ V ++ + NP + +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVQDVPASHESNESGEVEIQIDSEGNPLEISKIDGKQT 60
Query: 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAE 106
P +ISL DCLACSGCITSAE V++ + S E + + K K + S+S QSRASLA
Sbjct: 61 SLTPAQISLADCLACSGCITSAEEVLVAQHSHQELVKALKLKDKIFVASISQQSRASLAM 120
Query: 107 HFGISPLQVFKKLTTFL--KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
+ + P++ KL L +G + + TS R +LI +A R
Sbjct: 121 AYDL-PVETIDKLLVNLLADQMGFQKVVGTSLGRKFSLINEAKYVMAN----------RG 169
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
S P+LSS CPGW+ YAEK Y+LP IS VKS QQ G +K + ++Y
Sbjct: 170 KDSKPILSSICPGWVLYAEKT-HPYVLPMISPVKSAQQITGCLLKTLTADEFHVPKSQVY 228
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
H+++MPC+DKKLE+AR + G IP+VD VLT E++ L++ + N+
Sbjct: 229 HLSIMPCFDKKLESARPEIF-------------GDTIPDVDCVLTPKELIALLEEE--NY 273
Query: 285 EALEES-------PLDKMLTNVDDEGHLY-------GVAGSSGGYAETVFRHAAKTLFGK 330
+ + + P++++ V + Y SSGGYA R L K
Sbjct: 274 QLVPKIEPKSLTLPIEEVYDLVAPKYWPYPRYSWTNDPGSSSGGYAFNYLRFFQNDLISK 333
Query: 331 VI-EGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR------- 380
E K I +NSD E+ L + + + A+ GF+N+QN+VRK+K
Sbjct: 334 GYNESDFSMKVISGKNSDVFEMRLMYKEERVASAAIVNGFRNIQNLVRKLKPNAKTVGRV 393
Query: 381 --------------------------KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
K DY VE+MACPSGC+NGGGQIKP S K+
Sbjct: 394 NPLAARRRARMKEPESTSVEETADPSKVDY--VEIMACPSGCINGGGQIKPPNDVSEKDW 451
Query: 415 IKTLETIY 422
I + + Y
Sbjct: 452 IGEVLSKY 459
>gi|154287306|ref|XP_001544448.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408089|gb|EDN03630.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 630
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 227/505 (44%), Gaps = 110/505 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +KA + D +V+ K + V+ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIESLPRKADKNSKDVYEVAREDKIHPDNPPSVQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L+ ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLNTLDSCAELRIDELNGCSNAQRLRENDAGFSAEG 120
Query: 89 --------GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVK 129
GK + S+SPQ+RASLA +GIS + + FL G
Sbjct: 121 EQRTTESGGKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPDGLRAGGAYGNGFT 180
Query: 130 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYAEKQLGS 188
+ DT+ R + L + +E S+++ E P+LSSACPGWICYAEK
Sbjct: 181 WVIDTNVMRQVCLELSVSEVTESLNSSKDTLIETFPAPKRPVLSSACPGWICYAEKT-HP 239
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 248
++LP+IS +KSPQ G +K + + L +I+H+ +MPC+DKKLEA+R++
Sbjct: 240 HVLPHISRLKSPQALTGTLLKTVLSKALNISSAQIWHLAIMPCFDKKLEASRQELTDASW 299
Query: 249 SQEETYRDEGLE-------IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301
+ +G + +VD V+T+ E+L L + ++ L PL +
Sbjct: 300 QDASSMTQKGSAPTESHSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSPSVPLFP 359
Query: 302 EGHLY-------------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
+ + AG+SGGY H T + ++ + RNSD E
Sbjct: 360 DPYFAPFLFPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGRNSDVIE 415
Query: 349 VAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------- 382
AL G T++K A YGF+N+QN+VRK+K +
Sbjct: 416 YALISPSGDTIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCAATVSST 475
Query: 383 ---DYQFVEVMACPSGCLNGGGQIK 404
DY ++EVMACP GC NGGGQI+
Sbjct: 476 SATDYAYIEVMACPGGCTNGGGQIR 500
>gi|346979535|gb|EGY22987.1| LET1 protein [Verticillium dahliae VdLs.17]
Length = 588
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 222/487 (45%), Gaps = 101/487 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV---------------VSLKKATFKNPDKPQVSTSSKQQA 49
S L DL+DFI+P C+ SL+ + ++S +
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAAPPPPADGSLEHEVILDGQPGGPASSGLKPN 60
Query: 50 EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG-------------------- 89
P +ISL DCLACSGC+TSAE V++ QS E L+ ++ G
Sbjct: 61 APAEISLTDCLACSGCVTSAEAVLVSLQSHTEVLNTLDFGPSLRIVGPDEKGQFRVDGLE 120
Query: 90 ----KAVIISLSPQSRAS--------LAEHFGISPLQVFKKLTTFLKSLGVKS-----IF 132
K + S+SPQ+RAS E L+ + L S G + +
Sbjct: 121 DESRKLFVASVSPQTRASLAAAAGSGTTEQEAGHMLERLLRGPEGLASAGQHNNGFTWVL 180
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 192
DT+ +R+ L+ +E + K + SD + P L+S CPGW+CYAEK ++LP
Sbjct: 181 DTNVAREACLVLGADEVLGTDKAAASSDPK------PTLTSNCPGWVCYAEKTH-PHVLP 233
Query: 193 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 252
+IS VKSPQ +G +K + +KL P I+H+ VMPC+DKKLEA+RE+ DS
Sbjct: 234 HISKVKSPQALMGTLLKTTLSRKLNIPPSRIWHLAVMPCFDKKLEASREELT---DSVWA 290
Query: 253 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES------------PLDKMLTNVD 300
G I +VD V+T+ EVL L + +F +L + LD+ L
Sbjct: 291 GDGKPGRGIRDVDCVITSKEVLMLADSRGFDFFSLARTNPSLTRQLFPDPQLDRFLFPPQ 350
Query: 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLL 359
+AGSSGG +++ K ++ RN+D E + G+ +
Sbjct: 351 PAHRDKPIAGSSGGN----LYFTLQSVVSKNPGSQIQVIRGRNADVTEYIVASGAGEPIF 406
Query: 360 KFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCL 397
K A YGF+N+QN+VRK+K + +Y FVEVMACP GC
Sbjct: 407 KAARFYGFRNIQNLVRKLKPARPSRMPGGKPFGSARRPTGKTAGLEYTFVEVMACPGGCT 466
Query: 398 NGGGQIK 404
NGGGQIK
Sbjct: 467 NGGGQIK 473
>gi|336422696|ref|ZP_08602838.1| hypothetical protein HMPREF0993_02215 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336007595|gb|EGN37618.1| hypothetical protein HMPREF0993_02215 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 580
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 203/415 (48%), Gaps = 44/415 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK + L I + K V++ +P RA L E FG P+
Sbjct: 192 CVSCGQCIAVCPTGALYEKDYTQKILDAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTD 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G +FDT + DLT++E E + R K + LPM++S
Sbjct: 251 VEGKMAAALRRVGFDKVFDTDWAADLTIMEEATELLDRIK---------NGGVLPMITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +S+ KSPQQ GA +K + +K G P +I V+VMPC K
Sbjct: 302 SPGWIKYCEHYFPD-MTENLSTCKSPQQMFGAMLKTYFAEKEGIDPKKIVSVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D + +P+VD +TT E+ LI+ ++F L + D
Sbjct: 361 KFEIGRDD-------------QDAAGVPDVDIAITTRELARLIRRCGIDFTVLPDEKFD- 406
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
D G G A G++GG E R A + L G+ + +L+F +R + +E
Sbjct: 407 -----DPMGESTGAAVIFGATGGVMEAALRTAVEVLTGEEL-ANLDFTDVRGTQGVKEAT 460
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + DYQF+E+M CP GC+NGGGQ +
Sbjct: 461 YNVAGMDV-KVAVASGLGNARTLLNKVKSGEADYQFIEIMGCPGGCVNGGGQPQVSGDVR 519
Query: 411 PKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L A P + NP ++ LY+E+L +PGS KA + +HT Y
Sbjct: 520 NFTDVRGIRASVLYQNDSAKPIRKSHENPAIKKLYEEYLGEPGSHKAHETLHTSY 574
>gi|298711308|emb|CBJ26553.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 686
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 189/398 (47%), Gaps = 107/398 (26%)
Query: 163 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP-- 220
R L +L+SACPGW+CYAEK LP++S+VKSPQQ +G K + + P
Sbjct: 291 RGPGELLVLTSACPGWVCYAEKT-APEALPFMSTVKSPQQMMGVLAK-RVFPRAWNHPHP 348
Query: 221 ------------DEIYHV------------------------------------TVMPCY 232
DE+ V ++ CY
Sbjct: 349 SVAAAAAVTAAADEVSRVRDSASNGATPAASTLANETLDQSTPPPVRSRGVFHVSIAQCY 408
Query: 233 DKKLEAAREDFVF-QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES- 290
DKKLEA+R+DF LD EVD VLTT EVL+LI+ A +A S
Sbjct: 409 DKKLEASRKDFRHPDLDGDA-----------EVDLVLTTAEVLELIEESASAADATLTST 457
Query: 291 -------------------------------PLDKMLTNVDDEGHLYGV------AGSSG 313
P+ + +VD GV G+S
Sbjct: 458 SPASPGRDAASDYFRRHFPPGDLAEPLAPGFPVGQAAVSVDGLSLFGGVDGEGAAGGNSD 517
Query: 314 GYAETVFRHAAKTLFGKVIEGH-LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 372
GY E VFRHAA LFG + G L ++ RN+DFRE +LEV G+ L+FA YGF+N+Q+
Sbjct: 518 GYLEYVFRHAAVELFGVDLAGRPLVYREGRNADFRETSLEVNGQVALRFAYAYGFRNIQS 577
Query: 373 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL---IKTLETIYLENVMLA 429
I+ K + KC Y FVEVMACPSGC+NGGGQIKPK + P++ ++ + + E +
Sbjct: 578 ILAKARRGKCPYHFVEVMACPSGCVNGGGQIKPKKKEGPRDTRLRVERVSEVLREGRVPR 637
Query: 430 DPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVK 466
P NP+V+++Y E + PG +A++ +HT YH V K
Sbjct: 638 GPRDNPVVQAVYSELVGGGPGESRARELLHTSYHNVPK 675
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 104/224 (46%), Gaps = 48/224 (21%)
Query: 11 IGDLSDFIAPSQNCV-------------------------------------VSLKKATF 33
+GDL DFIAP Q C+ L
Sbjct: 6 LGDLDDFIAPGQACINPLFTTAADSAPATAAAAESAGSKGGAAMVLEIEDDRGPLDAMAV 65
Query: 34 KNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGK--A 91
+ KP + +S Q K+SL DCLACSGC+TSAETV++ +QS + + G+
Sbjct: 66 EEVVKPDLIRASNTQT--AKVSLDDCLACSGCVTSAETVLITQQSTGKLREAVASGRYSV 123
Query: 92 VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVKSIFDTSCSRDLTLIEACNEFI 150
V+ S++PQ+RASLAE FG+SP + +L FL+ GV + D+S D +L+EA EF+
Sbjct: 124 VVASITPQARASLAERFGLSPAETHARLLAFLRERHGVHHLVDSSLGADFSLLEAGEEFV 183
Query: 151 ARYK--QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 192
R++ S S E + L A G A L +++ P
Sbjct: 184 QRWRSINSGRSGPEGGRAKL----GAAVGEGAPARPPLAAWVAP 223
>gi|146296869|ref|YP_001180640.1| hydrogenase, Fe-only [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410445|gb|ABP67449.1| hydrogenase, Fe-only [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 579
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 213/418 (50%), Gaps = 40/418 (9%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CI + L EK S D + +K K V++ +P R +L E FG+
Sbjct: 185 SLNDVACTMCGQCIQACPVGALREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL 244
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ T LK LG +FDT DLT++E E I R K + L
Sbjct: 245 -PIGTRVTGKMVTALKMLGFDKVFDTDTGADLTIMEEGTELINRIK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S PGWI + E + L +S+ KSP + GA +K + QK+G P ++ V++
Sbjct: 295 PLITSCSPGWIKFCEHYFPEF-LDNLSTCKSPHEMFGAILKTYYAQKMGIDPANMFVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA RE+ P+VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKFEAQREELAAS-------------GYPDVDAVLTTRELARMIKEAGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
++ D + + G ++G ++GG E R + L GK +E ++E +R + R
Sbjct: 401 DNHFDDPMGDATGAGVIFG---TTGGVMEAALRTVYEILTGKPLE-NVEITQVRGLEGIR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPK 406
E ++V G +K A+ +G N + ++ VK + +Y F+E+MACP GC+ GGGQ I P
Sbjct: 457 EAEIDV-GTMKIKAAVAHGLANAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPA 515
Query: 407 PGQSPKELIK-TLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ K IY E+ L +NP ++ LY+E+L P SEKA +HT Y
Sbjct: 516 KVREKIDVAKLRASAIYDEDRSLPIRKSHENPTIKKLYEEFLGHPNSEKAHHILHTHY 573
>gi|170288544|ref|YP_001738782.1| hydrogenase, Fe-only [Thermotoga sp. RQ2]
gi|170176047|gb|ACB09099.1| hydrogenase, Fe-only [Thermotoga sp. RQ2]
Length = 582
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 216/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E ++ L + K K +++ +P R ++ E FG +P +
Sbjct: 190 DCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTI 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 250 STGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 303 CPGWVNLVEK-VYPELRTRLSSAKSPQGMLSALVKTYFAEKLGVKPEDIFHVSIMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 362 KDEALRKQLMVN-------------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDA 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + + F+ +R +E +++
Sbjct: 409 PLGISTGAAALFGV---TGGVMEAALRTAYELKTGKTLP-KIVFEDVRGLKGVKEAEIDL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + + A+ +G N++N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 465 DGKKI-RIAVVHGTANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEI 520
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E + L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 521 LRKRAEAIYTIDERMTLRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 570
>gi|302391022|ref|YP_003826842.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
gi|302203099|gb|ADL11777.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
Length = 571
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 220/416 (52%), Gaps = 51/416 (12%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI-SPLQ 114
DC C C+T+ T + E ++E +S ++ K V++ +P R +L E F + S +
Sbjct: 192 DCTNCGQCLTACPTGAIHEVYRINEVISALHDPDKHVVVQTAPAVRVALGEEFDMESGIN 251
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ T +K +G +FDT+ + DLT++E EFI R K ++ LP+++S
Sbjct: 252 TEGKMVTAMKKMGFDKVFDTNFTADLTIMEEGFEFIDRLK---------NDGPLPLITSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI +AE S +L ISS KSPQQ GA K +K+ P ++ V++MPC K
Sbjct: 303 SPGWIKFAEHNY-SDLLDNISSCKSPQQMFGALTKSFYPEKVDVDPADVVSVSIMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ + Y+D VD VLTT E+ ++I+ +NF L+E D
Sbjct: 362 KFEAEREEMT------DTGYQD-------VDHVLTTRELAEMIKEYGLNFVNLKEEEYD- 407
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
D G G A G++GG E R A + L + + G+++ + +R + +E
Sbjct: 408 -----DPFGISTGAAVIFGATGGVMEAALRTAYEVLTEEEL-GNVDLEMVRGFEGIKEAE 461
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+++ G+T +K A+ G +N +++ K DY F+E+MACP GCLNGGGQ P S
Sbjct: 462 VDINGQT-VKVAVASGLENAHQLLK----HKDDYHFIEIMACPGGCLNGGGQ--PISNDS 514
Query: 411 PKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y N F+ NP ++ LYD++LE+P SE + K++HT YH
Sbjct: 515 DV-LEKRREGLY--NTDKEREFRKSHENPAIQKLYDDYLEEPLSEVSHKYLHTHYH 567
>gi|406980696|gb|EKE02265.1| hypothetical protein ACD_20C00406G0010 [uncultured bacterium]
Length = 582
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 217/410 (52%), Gaps = 39/410 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C+ C CI T L E+ S+ + I + K VI+ +P R ++ E G+ S +
Sbjct: 199 CVNCGQCIMVCPTGALKERSSIRQVFEAIYDTKKHVIVQTAPAIRVTIGEAMGMDSGVIS 258
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ T L+ +G +FDT+ + DLT++E +E + R + LPM++S
Sbjct: 259 TGKMVTSLRRIGFDKVFDTNFAADLTIMEEGSELVERITK---------GGVLPMMTSCS 309
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E S I P +S+ KSP Q +GA K + QK G P +I+ V++MPC KK
Sbjct: 310 PGWIKFIEHFYPSLI-PNLSTCKSPHQMLGALAKSYYAQKQGIDPKDIFVVSIMPCTAKK 368
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + ++D EI +VD+VLTT E++ +++ ++F +LEES D +
Sbjct: 369 YECQRSE--MEVD-----------EIRDVDAVLTTRELVKVLKSLGIDFASLEESKFDSL 415
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L G ++ G+SGG E R A + GK + +++F ++R + +E + ++
Sbjct: 416 LGIATGAGDIF---GASGGVMEAALRSAYYLITGKELS-YIDFYSVRGLEGAKEAVIPID 471
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK A+ + ++ ++ + DY F+EVM CP GC+ GGGQ P + E
Sbjct: 472 GMN-LKVAVVNSLSQARKLMDRILKGEADYHFIEVMTCPGGCIAGGGQ----PINTDPER 526
Query: 415 IKT-LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK L++IY N L + NP V+ +Y+E+L++P SE + KH+HT Y
Sbjct: 527 IKARLKSIYKIDANKGLRASYHNPDVQRVYEEFLKKPLSEVSHKHLHTHY 576
>gi|307718326|ref|YP_003873858.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM
6192]
gi|306532051|gb|ADN01585.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM
6192]
Length = 596
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 220/416 (52%), Gaps = 42/416 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+AC C+ + EK++++ + + K V+ ++P R +L E FG+ P + V
Sbjct: 193 CVACGQCVVYCPVGALYEKEAVERVWEALADPEKVVVAQIAPAVRVALGEEFGMKPGELV 252
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LGV +FDT+ S DLT++E EF+ R ++ + LP+++S
Sbjct: 253 IGKIYAALRRLGVDYVFDTNFSADLTIMEEGTEFLHRLEKGER---------LPLITSCS 303
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI +AE +LP++S+ KSPQQ +GA +K + Q G P I +++MPC KK
Sbjct: 304 PGWIKFAETYYPD-LLPHLSTCKSPQQMMGAVVKTYFAQAKGIPPSRIVSLSIMPCTAKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ RD G +VD VLTT E+ +I+ + F+ L+E P D +
Sbjct: 363 FEAQREEM-----------RDSGFW--DVDIVLTTRELARMIRQAGIRFDQLKEEPADPV 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L++ G ++ G++GG E R A + GK + +EF +R +E +E+
Sbjct: 410 LSSYSGAGTIF---GATGGVMEAALRTAYEIKTGKSLP-KVEFAQVRGVKGVKEAVIELN 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRK-----CDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
G T ++ A+ +G N + ++ +V+ K Y F+EVMACP GC+ GGGQ P P +
Sbjct: 466 G-TQIRVAVAHGLSNARKVLDRVREAKERGEPLPYHFIEVMACPGGCVGGGGQPLPSPLK 524
Query: 410 SPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+E L +Y E+ L +NP VR+LY+ +L++P E +HT Y P
Sbjct: 525 KREE---RLMGLYAEDSALPVRKSHENPEVRALYEHFLKEPNGELPHTLLHTHYEP 577
>gi|291557757|emb|CBL34874.1| hydrogenases, Fe-only [Eubacterium siraeum V10Sc8a]
Length = 583
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 134/413 (32%), Positives = 207/413 (50%), Gaps = 39/413 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI---SPL 113
C++C CIT+ T + EK D+ + + K V++ +P RASL E FG +P+
Sbjct: 193 CVSCGQCITACPTGALAEKDDTDKVWDALADPEKVVVVQTAPAVRASLGEAFGYPMGTPV 252
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K+ L+ LG ++FDT+ DLT++E +EF+ R + LPM++S
Sbjct: 253 E--GKMVAALRRLGFNAVFDTNFGADLTIMEESHEFLDRVT---------NGGVLPMITS 301
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI + E +I P +SS KSPQQ GA K + +K+G P I V+VMPC
Sbjct: 302 CSPGWIRFCEAYFPEFI-PNLSSCKSPQQMNGAITKTYWAKKMGIDPKNIVSVSVMPCTA 360
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RED +P+VD +TT E++ +I + F L + D
Sbjct: 361 KKFEIGRED-------------QSAAGVPDVDISITTRELVKMINRAGLRFRDLPDEVAD 407
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
L N ++G ++GG E R A L G+ + +EFK +R + + A
Sbjct: 408 SPLGNGTGAAVIFG---ATGGVMEAALRTAVWKLTGEAADSPVEFKDVRGVEGIKTAEYK 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQS-- 410
G +K A+ G N + + KVK + + F+E+MACP GC+NGGGQ I+P ++
Sbjct: 465 VGDLTVKVAVVSGLANAKKFLTKVKNGEVECHFIEIMACPGGCVNGGGQVIQPADVRNFT 524
Query: 411 --PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E K L ++ N L ++P V+ +Y+ +L +PGS A + +HT Y
Sbjct: 525 DIRAERAKALYSLDDAN-KLRKSHESPDVKEVYENFLGEPGSHIAHEILHTSY 576
>gi|222099459|ref|YP_002534027.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM
4359]
gi|221571849|gb|ACM22661.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM
4359]
Length = 600
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 216/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E ++ L + K K +++ +P R ++ E FG +P V
Sbjct: 208 DCIGCGQCAVFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTV 267
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+L L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 268 STGQLVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 320
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 321 CPGWVNLVEK-VYPELRTRLSSAKSPQGMLSALVKTYFAEKLGVKPEDIFHVSIMPCTAK 379
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 380 KDEAMRKQLMVN-------------GVPAVDVVLTTRELGKLIRIKKIPFANLPEEEYDA 426
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + L F+ +R +E +E+
Sbjct: 427 PLGISTGAAALFGV---TGGVMEAALRTAYELKTGKTLP-KLVFEDVRGLKGVKEAEVEL 482
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G+ + + A+ +G N++N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 483 DGQKI-RVAVVHGTANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEV 538
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E + + +NP ++ LY+E+LE P S +A + +HT Y
Sbjct: 539 LRKRAEAIYTIDERMTIRKSHENPAIKKLYEEYLEHPLSHRAHELLHTYY 588
>gi|339443430|ref|YP_004709435.1| hypothetical protein CXIVA_23660 [Clostridium sp. SY8519]
gi|338902831|dbj|BAK48333.1| hypothetical protein CXIVA_23660 [Clostridium sp. SY8519]
Length = 583
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 212/418 (50%), Gaps = 46/418 (11%)
Query: 59 CLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L+++ + D F + + K VI+ +P RA+L E F P+
Sbjct: 192 CVSCGQCIAVCPTGALQEKDNTKDVFDAIADPTKRVIVQTAPAVRAALGEEFDY-PIGTD 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E NE I R + LPM++S
Sbjct: 251 VEGKMAAALRRLGFDDVFDTDFAADLTIMEEANELIERVT---------NGGVLPMMTSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E +LP++SS K+P GA K + K+G ++ V+VMPC K
Sbjct: 302 SPGWIKYCEHYFPD-LLPHLSSCKAPHTMFGAIAKSYYADKIGVDKKDLVVVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D ++G +P+VD V+TT E+ +I++ + F L + D
Sbjct: 361 KFEITRPD-------------EDGAGVPDVDIVITTRELARMIRMAGIQFRDLPDEKFDA 407
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
L G G A G++GG E R A + + G+ + L+FK +R +D +E
Sbjct: 408 PL------GLGTGAAVIFGATGGVMEAALRTAYEKITGEELPA-LDFKEVRGTDGIKEAT 460
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG-- 408
+++G T +K A+ + ++++KV+ + DY F+EVM CP GC+NGGGQ + +PG
Sbjct: 461 YDLKG-TKMKVAVASSTKCAHDLMKKVQSGEADYTFIEVMGCPGGCVNGGGQPQ-QPGYV 518
Query: 409 QSPKELIKTLETIYLE---NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
++ +L K E N +NP + LYDE+L QPGS A + +HT Y P
Sbjct: 519 RNTVDLAKERAKALYENDRNCTYRKSHENPAIIQLYDEFLGQPGSHLAHELLHTTYIP 576
>gi|195552323|ref|XP_002076430.1| GD17698 [Drosophila simulans]
gi|194201683|gb|EDX15259.1| GD17698 [Drosophila simulans]
Length = 288
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 152/262 (58%), Gaps = 31/262 (11%)
Query: 4 KFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV--------STSSKQQAEPVK 53
+ S L++ D+ DFI PSQ C+ V + KA K K ++ S S + V
Sbjct: 3 RLSTALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDSCFEESESGNLKLNKVD 62
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKA---------VIISLSPQSR 101
ISL+DCLACSGCITSAE V++ +QS +E L + +K KA ++I+L+ Q
Sbjct: 63 ISLQDCLACSGCITSAEEVLITQQSQEELLKVLQENSKNKASEDWDNVRTIVITLATQPI 122
Query: 102 ASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
SLA + I + L + +SLG + T + D+ L+E EF+ RY
Sbjct: 123 LSLAHRYQIGVEDAARHLNGYFRSLGADYVLSTKVADDIALLECRQEFVDRY-------- 174
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
R N +L MLSS+CPGW+CYAEK G++ILPY+S+ +SPQQ +G +K + K+
Sbjct: 175 -RENENLTMLSSSCPGWVCYAEKTHGNFILPYVSTTRSPQQIMGVLVKQILADKINVPAS 233
Query: 222 EIYHVTVMPCYDKKLEAAREDF 243
IYHVTVMPCYDKKLEA+REDF
Sbjct: 234 RIYHVTVMPCYDKKLEASREDF 255
>gi|399216842|emb|CCF73529.1| unnamed protein product [Babesia microti strain RI]
Length = 510
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 222/467 (47%), Gaps = 88/467 (18%)
Query: 8 TLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA-EPVKISLKDCLACSGCI 66
T+++ L+D++ PS C++ L K P+ +PVK+SL DCL+CSGC+
Sbjct: 3 TVKLSGLNDYLHPSPECILPLTKTKKSFEVTPRTDKDVDSVGNQPVKVSLSDCLSCSGCL 62
Query: 67 TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL 126
TS+ MLE E + K ++S+S QS SL+ +G+ + F ++ +
Sbjct: 63 TSSAP-MLENNFYLEVFDKLKGSKCPVLSISTQSLLSLSTMYGLKLTETFLRIKKYFIGK 121
Query: 127 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 186
GVK +F+ S + + L E+ EF YK SN++L + S CPGW+ YAEK L
Sbjct: 122 GVKYVFNQSLAEAIQLQESKKEFDKSYK---------SNTTL--ICSNCPGWVIYAEKSL 170
Query: 187 GSYILPYISSVKSPQQTIGATIKH--HICQKLGFR----------------------PDE 222
L +S++ Q G +K I K+ F P +
Sbjct: 171 DREFLGNMSTIMPLQAIQGLLVKFVVTIRHKMEFNMFKYREIFNPLLLPIININEITPSD 230
Query: 223 IYHVTVMPCYDKKLEAAREDFV---------FQLDSQEETYRDEGLEIPEVDSVLTTGEV 273
IYH+ + PC+DKKLE R D V Q+D+ + + L +D V+TTGE+
Sbjct: 231 IYHLCITPCHDKKLELLRPDLVANYSNLCKLLQIDNDSNSVKTTSL----IDGVITTGEL 286
Query: 274 L-----DLIQLKAVNFEALEES----PLD----KMLTNVDDEGHLYGVAGS--------- 311
D + +VN E +S P+D K L + G + S
Sbjct: 287 EQLLNDDFYNISSVNDELYADSDLLTPVDLESIKSLLGIQQNGVTNDIINSGIMPYDNTE 346
Query: 312 ---SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL----EVEGKTL------ 358
SGGY E +F++AAK GK+I+ ++FK + N DF++ L ++ K +
Sbjct: 347 FVHSGGYGEELFKYAAKRYHGKIID-TVKFKNVTNKDFKQATLLTHDNIDNKEIKSCDKP 405
Query: 359 -LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
+K L GF+N+ N+V +K + +VE+MACP GC+NGGGQIK
Sbjct: 406 TIKITLATGFRNIANVVSNIKTN-LGFNYVELMACPGGCINGGGQIK 451
>gi|304316579|ref|YP_003851724.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778081|gb|ADL68640.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 581
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 213/415 (51%), Gaps = 36/415 (8%)
Query: 55 SLKD--CLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGI 110
SL D C++C CI + + ++ + + + +++ K V++ +P R +L E FG+
Sbjct: 185 SLNDSPCISCGQCIEACPVGAIYEKDHTKMVYDALLDEKKYVVVQTAPAVRVALGEEFGM 244
Query: 111 SPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ K+ + LK LG +FDT + DLT+IE NE + R + LP
Sbjct: 245 PYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRINEG---------GKLP 295
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M++S PGWI Y E+ +I +S+ KSP +GA IK + +K G P +I+ V++M
Sbjct: 296 MITSCSPGWINYCERYYPEFI-DNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIM 354
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E R + +G++ +VD+VLTT E+ +I+ ++F L +
Sbjct: 355 PCTAKKYEIDRPQMM-----------TDGMK--DVDAVLTTRELARMIKQSGIDFVNLPD 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
S D L G ++G ++GG E R A + GK IE + E+K +R + RE
Sbjct: 402 SEYDNPLGESSGAGVIFG---ATGGVMEAALRTVADIVEGKDIE-NFEYKEVRGLEGIRE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ + GK + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P
Sbjct: 458 ANINIGGKEI-KVAIANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPN 516
Query: 409 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K L IY +++ + KNP++ LY+E+L P EK+ +HT Y
Sbjct: 517 EKDLVRNKRLNAIYEADKDLPIRKSHKNPMITKLYEEFLISPLGEKSHHLLHTSY 571
>gi|167761227|ref|ZP_02433354.1| hypothetical protein CLOSCI_03632 [Clostridium scindens ATCC 35704]
gi|167660893|gb|EDS05023.1| hydrogenase, Fe-only [Clostridium scindens ATCC 35704]
Length = 583
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 203/415 (48%), Gaps = 44/415 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK + L I + K V++ +P RA L E FG P+
Sbjct: 195 CVSCGQCIAVCPTGALYEKDYTQKILDAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTD 253
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G IFDT + DLT++E E + R K + LPM++S
Sbjct: 254 VEGKMAAALRRVGFDKIFDTDWAADLTIMEEATELLDRIK---------NGGVLPMITSC 304
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +S+ KSPQQ GA +K + +K G P +I V+VMPC K
Sbjct: 305 SPGWIKYCEHYFPD-MTENLSTCKSPQQMFGAMLKTYFAEKEGIDPKKIVSVSVMPCTAK 363
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D + +P+VD +TT E+ LI+ ++F L + D
Sbjct: 364 KFEIGRDD-------------QDAAGVPDVDIAITTRELARLIRRCGIDFTVLPDEKFD- 409
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
D G G A G++GG E R A + L G+ + +L+F +R + +E
Sbjct: 410 -----DPMGESTGAAVIFGATGGVMEAALRTAVEVLTGEEL-ANLDFTDVRGTQGVKEAT 463
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + DY+F+E+M CP GC+NGGGQ +
Sbjct: 464 YNVAGMDV-KVAVASGLGNARTLLNKVKSGEADYKFIEIMGCPGGCVNGGGQPQVSGDVR 522
Query: 411 PKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L A P + NP ++ LY+E+L +PGS KA + +HT Y
Sbjct: 523 NFTDVRGIRASVLYQNDSAKPIRKSHENPAIKKLYEEYLGEPGSHKAHETLHTSY 577
>gi|148269859|ref|YP_001244319.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
gi|147735403|gb|ABQ46743.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
Length = 582
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 137/410 (33%), Positives = 217/410 (52%), Gaps = 35/410 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T ++E ++ L + K K +++ +P R ++ E FG +P +
Sbjct: 190 DCIGCGQCAAFCPTGAIVENSAVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTI 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ L+ LG +FDT+ DLT++E +EF+ R ++ D LPM +S
Sbjct: 250 STGQMVAALRRLGFDYVFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ EK + + +SS KSPQ + A +K + +KLG +P++I+HV++MPC K
Sbjct: 303 CPGWVNLVEK-VYPELRTRLSSAKSPQGMLSALVKTYFAEKLGVKPEDIFHVSIMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R+ + +P VD VLTT E+ LI++K + F L E D
Sbjct: 362 KDEALRKQLMVN-------------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDA 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L L+GV +GG E R A + GK + + F+ +R +E +++
Sbjct: 409 PLGISTGAAVLFGV---TGGVMEAALRTAYELKTGKTLP-KIVFEDVRGLKGVKEAEIDL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GK + + A+ +G N++N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+
Sbjct: 465 DGKKI-RIAVVHGTANVRNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEI 520
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K E IY E ++L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 521 LRKRAEAIYTIDERMVLRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 570
>gi|23664246|gb|AAN39277.1| iron hydrogenase precursor [Neocallimastix frontalis]
Length = 389
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 212/408 (51%), Gaps = 43/408 (10%)
Query: 75 EKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 132
E+ + E L ++ K K ++ S +P R +LAE F P K+ L+ LG IF
Sbjct: 2 ERNEVIEVLRQLDSKRKILVCSTAPAIRVALAEEFNADPDFNFTGKMVAGLRKLGFDYIF 61
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--I 190
DT+ S DLT++E E I R + PM +S CPGWI EK SY +
Sbjct: 62 DTNFSADLTIMEEGTELINRL---------NNGGKFPMFTSCCPGWINMVEK---SYPEL 109
Query: 191 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 250
+S+ KSPQQ IGA IK + +KLG ++I HV+VMPC KK EA R +FV +
Sbjct: 110 RENLSTCKSPQQMIGALIKSYFAKKLGVSTEDIIHVSVMPCTAKKGEAKRPEFVQK---- 165
Query: 251 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 310
+G P++D VLTT E+L L++LK VN L + LD L G+L+GV
Sbjct: 166 ----GKDGKNYPDIDYVLTTRELLTLMKLKKVNPAELADDKLDSPLGISSSAGNLFGV-- 219
Query: 311 SSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSDFREVAL----EVEGKTL-LKFA 362
+GG E R A+ + G +E + E K +R + + A EGK + ++ A
Sbjct: 220 -TGGVMEAAVR-TAQIITG--VENPIPLGELKAVRGLEGIKAATVPLKTKEGKDINVRAA 275
Query: 363 LCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 422
+ G N+Q + K+K ++ ++ FVE+M CP GC+NGGGQ PK PK + K ++ +Y
Sbjct: 276 VVSGGANIQKFLEKIKNKEVEFDFVEMMMCPGGCINGGGQ--PKSA-DPKIVTKKMQRMY 332
Query: 423 L--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
E L +N V+ +Y E+L +P + + +HT Y+ K+I
Sbjct: 333 TMDEQATLRLSHENEEVKQIYKEFLIEPNGHLSHELLHTHYNDRSKAI 380
>gi|295669482|ref|XP_002795289.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226285223|gb|EEH40789.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 627
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 231/499 (46%), Gaps = 109/499 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLK----KATFKNPDKPQVSTSSKQQA---EPVKISLK 57
S L DL+DFI+P C+ ++ + + K + +V+T K QA +ISL
Sbjct: 1 MSAILSSDDLNDFISPGVACIKPVETLPEEDSKKQENAYEVTTEDKIQAGKPPAAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLKTLDSCPEFQIHNQKKCGSESSRPDVPCSAEGQK 120
Query: 89 ----GKAVII-SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIF 132
G+ + I S+SPQ RASLA FGIS + + FL G +
Sbjct: 121 CSADGRKIFIASVSPQVRASLAATFGISERKAGYLIEQFLSGPQGLRAGGAHGSGFTWVV 180
Query: 133 DTSCSRDLTLIEACNEFIARYKQSQE------SDDERSNSSLPMLSSACPGWICYAEKQL 186
DT+ R++ L + E K+S E S +E P+LSS CPGWICYAEK
Sbjct: 181 DTNVMRNVCLELSVTEV----KESLEIPGNTISGEEFPVPKRPILSSICPGWICYAEKT- 235
Query: 187 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 246
++LP++S +KSPQ G +K + + L P I+H+ +MPC+DKKLEA+R++
Sbjct: 236 HPHVLPHMSRIKSPQALTGTLLKSVLRKALNISPCHIWHLAIMPCFDKKLEASRQELT-N 294
Query: 247 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD---E 302
Q ++ + + +VD V+T+ E+L L + ++ L PL +T D E
Sbjct: 295 ASWQGLSWTESHTPVRDVDCVITSRELLMLATSRNISLLNLPMKPLPPSSITPFPDTYLE 354
Query: 303 GHLY---------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
L+ AG SGGY H T + H++ + RNSD E AL
Sbjct: 355 PFLFPKSLPHVQSPAAGPSGGY----LYHILTTYQRRNPGSHIQTQRGRNSDVIEYALTS 410
Query: 354 E-GKTLLKFALCYGFQNLQNIVRKVKMRK---------------------------CDYQ 385
G T++K A YGF+N+QN+VRK+K + D
Sbjct: 411 NSGDTIIKAARYYGFRNIQNLVRKLKPPRTSRLPGAKPIIARRAAGAGSVAGNASVTDCS 470
Query: 386 FVEVMACPSGCLNGGGQIK 404
++EVMACP GC NGGGQ++
Sbjct: 471 YIEVMACPGGCTNGGGQVR 489
>gi|168184519|ref|ZP_02619183.1| iron hydrogenase 1 [Clostridium botulinum Bf]
gi|237795251|ref|YP_002862803.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
gi|182672373|gb|EDT84334.1| iron hydrogenase 1 [Clostridium botulinum Bf]
gi|229262419|gb|ACQ53452.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
Length = 577
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 210/411 (51%), Gaps = 36/411 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C++ T + E + + ++ K K VI+ +P RA+L E FG+ P +
Sbjct: 195 NCTFCGQCVSVCPTGTLTEVNNTSKVWDALSQKDKVVIVQTAPAIRAALGEEFGLEPGTR 254
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ + L+ LG +FDT + DLT++E +EFI R + +LPML+S
Sbjct: 255 VTGKMVSALRQLGFNKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLTSC 305
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGWI + E ++ SS KSPQQ G K ++ +K+ P +I V+VMPC K
Sbjct: 306 CPGWIKFFEHNFND-LMDIPSSCKSPQQMFGTIAKSYLAEKMKVDPKDIIVVSVMPCLAK 364
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ + G IP+VD V++T E+ +I ++F +L+E D
Sbjct: 365 KYEAKREEM-----------KRNG--IPDVDIVISTRELSKMIIEAGIDFNSLQEEEFDN 411
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L ++G ++GG E R A + + ++ +EF +R D RE + +
Sbjct: 412 PLGESTGASVIFG---TTGGVMEAALRTAYEWVTKDTLK-DVEFIGVRGEDGIREATVNI 467
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+K A+ G N + ++ ++ K +Y +E+MACPSGC++GGGQ P
Sbjct: 468 N-DIEVKVAIASGLGNARKLLNDIRDGKSEYHMIEIMACPSGCVDGGGQ--PYIYGDTNI 524
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 525 LKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|421074329|ref|ZP_15535365.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
gi|392527556|gb|EIW50646.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
Length = 574
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 211/412 (51%), Gaps = 42/412 (10%)
Query: 59 CLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVF 116
C C+ C T A T+ + +++ LS+ K V++ +P R +L E + V
Sbjct: 194 CGQCAAVCPTGAITIKDDTEAVWRELSD--PSKHVVVQTAPAVRVALGEALDLPQGTIVT 251
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ L+ LG +FDT+ S DLT++E E + R K + LPM++S P
Sbjct: 252 GKMVAALRRLGFDRVFDTNFSADLTIMEEGFELLDRLK---------NGGKLPMITSCSP 302
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GW+ +AE + +L ++S+ KSPQQ GA +K + +K G P +I V VMPC KK
Sbjct: 303 GWVNFAELKYPD-LLEHLSTAKSPQQMFGALVKTYYAEKAGIDPKDIISVAVMPCTAKKA 361
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA RE+F R G + +VD VLTT E+ +I+ + +NF AL D +
Sbjct: 362 EAGREEF-----------RSSGYQ--DVDYVLTTSELAMMIREQGLNFNALPSEEYDAPM 408
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEG 355
G ++ G++GG E R + + GK +E ++FKT+R + +E ++V G
Sbjct: 409 GISTGAGVIF---GATGGVMEAALRTVYEVVTGKELE-CIDFKTVRGLEGIKEAEVQV-G 463
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
+K A+ + N + ++ KV+ + DY F+E+MACP GC+ G GQ P EL
Sbjct: 464 DLTIKVAVAHTLSNAKILMEKVRKGEADYHFIEIMACPGGCIGGAGQ----PIVMATELR 519
Query: 416 -KTLETIY---LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
K ++ IY N M +NP V LYD WL +P EK+ +HT YHP
Sbjct: 520 QKRIDAIYQCDTANTM-RKSHQNPAVTELYDTWLGEPLGEKSHHLLHTHYHP 570
>gi|170760857|ref|YP_001787172.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
gi|169407846|gb|ACA56257.1| iron hydrogenase 1 [Clostridium botulinum A3 str. Loch Maree]
Length = 577
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 209/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKIVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLKEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++G ++GG E R T + V +G L EF +R + RE
Sbjct: 410 DNPLGKSTGASVIFG---TTGGVMEAALR----TAYEWVTKGTLKDVEFIEVRGEEGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ + T +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIN-DTEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|387233127|gb|AFJ73533.1| iron hydrogenase precursor [Neocallimastix frontalis]
Length = 636
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 217/430 (50%), Gaps = 44/430 (10%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGIS 111
++ C+ C C + E+ + E L ++ K K ++ S +P R +LAE F
Sbjct: 227 MNFTKCVECGQCSQVCPVGAITERNEVIEVLRQLDSKRKILVCSTAPAIRVALAEEFNAD 286
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P K+ L+ LG IFDT+ S DLT++E E I R + PM
Sbjct: 287 PDFNFTGKMVAGLRKLGFDYIFDTNFSADLTIMEEGTELINRLN---------NGGKFPM 337
Query: 171 LSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
+S CPGWI EK SY + +S+ KSPQQ IGA IK + +KLG ++I HV+V
Sbjct: 338 FTSCCPGWINMVEK---SYPELRENLSTCKSPQQMIGAVIKSYFAKKLGVSTEDIIHVSV 394
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA R +FV + +G P++D VLTT E+L L++LK VN L
Sbjct: 395 MPCTAKKGEAKRPEFVQK--------GKDGKNYPDIDYVLTTRELLTLMKLKKVNPAELA 446
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD 345
+ D L G+L+GV +GG E R A+ + G +E + E K +R +
Sbjct: 447 DDKFDSPLGISSSAGNLFGV---TGGVMEAAVR-TAQIITG--VENPIPLGELKAVRGLE 500
Query: 346 FREVAL----EVEGKTL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+ A EGK + ++ A+ G N+Q + K+K ++ ++ FVE+M CP GC+NGG
Sbjct: 501 GIKAATVPLKTKEGKDINVRAAVVSGGANIQKFLEKIKNKEVEFDFVEMMMCPGGCINGG 560
Query: 401 GQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GQ K PK + K ++ +Y E L +N ++ +Y E+L +P + + +H
Sbjct: 561 GQPK---SADPKIVTKKMQRMYTMDEQATLRLSHENEEIKQIYKEFLIEPNGHLSHELLH 617
Query: 459 TEYHPVVKSI 468
T Y+ K+I
Sbjct: 618 THYNDRSKAI 627
>gi|386346388|ref|YP_006044637.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
gi|339411355|gb|AEJ60920.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
Length = 597
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 220/416 (52%), Gaps = 42/416 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+AC C+ + EK++++ + + K V+ ++P R +L E FG+ P + V
Sbjct: 194 CVACGQCVVYCPVGALYEKEAVERVWEALADPEKVVVAQIAPAVRVALGEEFGMKPGELV 253
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LGV +FDT+ S DLT++E EF+ R ++ + LP+++S
Sbjct: 254 IGKIYAALRRLGVDYVFDTNFSADLTIMEEGTEFLHRLEKGER---------LPLITSCS 304
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI +AE +LP++S+ KSPQQ +GA +K + Q G P I ++VMPC KK
Sbjct: 305 PGWIKFAETYYPD-LLPHLSTCKSPQQMMGAVVKTYFAQAKGIPPSRIVSLSVMPCTAKK 363
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ RD G +VD VLTT E+ +I+ + F+ L+E P D +
Sbjct: 364 FEAQREEM-----------RDSGFW--DVDIVLTTRELARMIRQAGIRFDQLKEEPADPV 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L++ ++ G++GG E R A + GK + +EF +R +E +E+
Sbjct: 411 LSSYSGAATIF---GATGGVMEAALRTAYELKTGKSLP-RVEFAQVRGVKGVKEAVIELN 466
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRK-----CDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
G T ++ A+ +G N + ++ +V+ K Y F+EVMACP GC+ GGGQ P P +
Sbjct: 467 G-TQIRVAVAHGLSNARKVLDRVREAKERGEPLPYHFIEVMACPGGCVGGGGQPLPSPLK 525
Query: 410 SPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+E L +Y E+ L+ +NP VR+LY+ +L++P E +HT Y P
Sbjct: 526 KREE---RLMGLYAEDGALSVRKSHENPEVRALYEHFLKEPNGELPHTLLHTHYEP 578
>gi|294655913|ref|XP_458135.2| DEHA2C10406p [Debaryomyces hansenii CBS767]
gi|259511478|sp|Q6BUI4.2|NAR1_DEBHA RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|199430710|emb|CAG86206.2| DEHA2C10406p [Debaryomyces hansenii CBS767]
Length = 545
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 160/498 (32%), Positives = 225/498 (45%), Gaps = 114/498 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK--NPDKPQVSTSSKQQAEPV---------- 52
S L DL+DFI+P C+ + + N + +V + P+
Sbjct: 1 MSAILSADDLNDFISPGVACIKPPAENVNRDTNNENGEVDIQIDNEGNPIEISRLDGTAT 60
Query: 53 -----KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI-----NK-GKAVIISLSPQSR 101
+ISL DCLACSGCITSAE +++ + S +E + + NK K + S+S QSR
Sbjct: 61 SLSAAQISLADCLACSGCITSAEEILVAQHSHNELIKALKEKVQNKTDKVFVASISHQSR 120
Query: 102 ASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
ASLA + ++ +V + L F+ +G I TS R L+LI I++ ++ E
Sbjct: 121 ASLATAYNLTVEEVDRLLINLFINQMGFSYIVGTSLGRKLSLIYESQNIISKKEEKFEG- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
P LSS CPGW+ YAEK Y+LP IS VKSPQQ G +K + L
Sbjct: 180 --------PTLSSICPGWVLYAEKT-HPYVLPRISDVKSPQQITGCLLKTLTARDLNTTR 230
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP-EVDSVLTTGEVLDLIQL 279
D IYH+++MPC+DKKLE+AR + + E P +VD VLT E++ L+
Sbjct: 231 DNIYHLSIMPCFDKKLESARPE------------KGEPESAPNDVDCVLTAKELITLLDE 278
Query: 280 KAVNFEALE---ESPLDKMLTNVD--------------DEGHLYGVAGSSGGYAETVFRH 322
+ +F ES L L + D SSGGYA +
Sbjct: 279 HSDDFSLFPPQVESILSASLVSTTELYTKCAPKNWPFVDLSWSNDNGSSSGGYAYHYIKL 338
Query: 323 AAKTLFGKVIEGH----LEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRK 376
A + L K + KTI RNSD E+ L + T+ A+ GF+N+QN+VRK
Sbjct: 339 AQEHLILKDPSTYQPENFTLKTISGRNSDIYELRLIYKDATVASAAIVNGFRNIQNLVRK 398
Query: 377 VK-----------------------------------------MRKCDYQFVEVMACPSG 395
+K KCDY VE+MACP+G
Sbjct: 399 LKPSTKQTSTVKANPLASRRRARLASKTDGTASSNNATQDTADASKCDY--VEIMACPNG 456
Query: 396 CLNGGGQIKPKPGQSPKE 413
C+NGGGQI P P P++
Sbjct: 457 CINGGGQINP-PADVPEK 473
>gi|167750765|ref|ZP_02422892.1| hypothetical protein EUBSIR_01743 [Eubacterium siraeum DSM 15702]
gi|167656200|gb|EDS00330.1| hydrogenase, Fe-only [Eubacterium siraeum DSM 15702]
Length = 583
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 207/413 (50%), Gaps = 39/413 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI---SPL 113
C++C CIT+ T + EK D+ + + K V++ +P RASL E FG +P+
Sbjct: 193 CVSCGQCITACPTGALAEKDDTDKVWDALADPEKVVVVQTAPAVRASLGEAFGYPMGTPV 252
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K+ L+ LG ++FDT+ DLT++E +EF+ R + LPM++S
Sbjct: 253 E--GKMVAALRRLGFNAVFDTNFGADLTIMEESHEFLDRVT---------NGGVLPMITS 301
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI + E +I P +SS KSPQQ GA K + +K+G P I V+VMPC
Sbjct: 302 CSPGWIRFCEAYFPEFI-PNLSSCKSPQQMNGAITKTYWAKKMGIDPKNIVSVSVMPCTA 360
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RED +P+VD +TT E++ +I + F L + D
Sbjct: 361 KKFEIGRED-------------QSAAGVPDVDISITTRELVKMINRAGLRFRDLPDEVAD 407
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
L N ++G ++GG E R A L G+ + +EFK +R + + A
Sbjct: 408 SPLGNGTGAAVIFG---ATGGVMEAALRTAVWKLTGEAADSPVEFKDVRGVEGIKTAEYK 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQS-- 410
G +K A+ G N + + +VK + + F+E+MACP GC+NGGGQ I+P ++
Sbjct: 465 VGDLTVKVAVVSGLANAKKFLTQVKNGEVECHFIEIMACPGGCVNGGGQVIQPADVRNFT 524
Query: 411 --PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E K L ++ N L ++P V+ +Y+ +L +PGS A + +HT Y
Sbjct: 525 DIRAERAKALYSLDDAN-KLRKSHESPDVKEVYENFLGEPGSHIAHEILHTSY 576
>gi|254478298|ref|ZP_05091678.1| putative hydrogenase, Fe-only subfamily [Carboxydibrachium
pacificum DSM 12653]
gi|214035763|gb|EEB76457.1| putative hydrogenase, Fe-only subfamily [Carboxydibrachium
pacificum DSM 12653]
Length = 581
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 227/430 (52%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + + K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIMVCPVGAIYEKDHTKRVYEALADDKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G ++FDT+ + DLT++E +E + R K L
Sbjct: 245 -PVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGSELLERIKHG---------GKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P +I+ V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLDPKDIFVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE RE+ + G++ +VD+VLTT E+ +I+ ++F L+
Sbjct: 354 MPCTAKKLEIEREEMI-----------RNGMK--DVDAVLTTRELARMIKEMGIDFVNLK 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A+ + G+ I G ++F+ +R + R
Sbjct: 401 DEEFDEPLGMSTGAGAIFG---ATGGVMEAALRTVAEIVEGRDI-GKIDFEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E + ++G + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATITIDGMDI-KIAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKEL--IKTL--ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ +K L + IY +N+ + +NP ++ LY+E+L P SEK+ + +HT Y
Sbjct: 512 IHNPNEMEEVKKLRAKAIYEIDKNLPIRKSHENPAIKRLYEEFLGHPLSEKSHELLHTHY 571
Query: 462 -----HPVVK 466
+P+VK
Sbjct: 572 SRKELYPLVK 581
>gi|291530731|emb|CBK96316.1| hydrogenases, Fe-only [Eubacterium siraeum 70/3]
Length = 583
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 207/413 (50%), Gaps = 39/413 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI---SPL 113
C++C CIT+ T + EK D+ + + K V++ +P RASL E FG +P+
Sbjct: 193 CVSCGQCITACPTGALAEKDDTDKVWDALADPEKVVVVQTAPAVRASLGEAFGYPMGTPV 252
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K+ L+ LG ++FDT+ DLT++E +EF+ R + LPM++S
Sbjct: 253 E--GKMVAALRRLGFNAVFDTNFGADLTIMEESHEFLDRVT---------NGGVLPMITS 301
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI + E +I P +SS KSPQQ GA K + +K+G P I V+VMPC
Sbjct: 302 CSPGWIRFCEAYFPEFI-PNLSSCKSPQQMNGAITKTYWAKKMGIDPKNIVSVSVMPCTA 360
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RED +P+VD +TT E++ +I + F L + D
Sbjct: 361 KKFEIGRED-------------QSAAGVPDVDISITTRELVKMINRAGLRFRDLPDEVAD 407
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
L N ++G ++GG E R A L G+ + +EFK +R + + A
Sbjct: 408 SPLGNGTGAAVIFG---ATGGVMEAALRTAVWKLTGEAADSPVEFKDVRGVEGIKTAEYK 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQS-- 410
G +K A+ G N + + +VK + + F+E+MACP GC+NGGGQ I+P ++
Sbjct: 465 VGDLTVKVAVVSGLANAKKFLTQVKNGEVECHFIEIMACPGGCVNGGGQVIQPADVRNFT 524
Query: 411 --PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E K L ++ N L ++P V+ +Y+ +L +PGS A + +HT Y
Sbjct: 525 DIRAERAKALYSLDDAN-KLRKSHESPDVKEVYENFLGEPGSHIAHEILHTSY 576
>gi|323703143|ref|ZP_08114797.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333923220|ref|YP_004496800.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323531920|gb|EGB21805.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333748781|gb|AEF93888.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 593
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 206/412 (50%), Gaps = 33/412 (8%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI- 110
I+ C+ C CI + E S+ +F + + V++ ++P + +L E F +
Sbjct: 186 IAETSCIYCGQCINVCPVGAITENLSIYQFTKAVADPDMTVLVQIAPAVKVALGEEFKLP 245
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V KL T L+ LGV +F+T S DLT++E EF+ R S + LPM
Sbjct: 246 AGTDVSGKLVTALRLLGVDKVFNTDFSADLTIMEEGTEFLGRLNNSGQ---------LPM 296
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CP W+ +AE+ +LP++SS KSPQQ GA K QK P +I V+VMP
Sbjct: 297 ITSCCPSWVKFAEQNY-PQLLPHLSSCKSPQQMFGAIAKTFYAQKENLNPGKICVVSVMP 355
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA+R E RD I EVD VLTT E+ LI+L +NF L +
Sbjct: 356 CVTKKFEASR----------PEMARD---GIREVDIVLTTRELAKLIRLNKINFNQLADG 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREV 349
D L G ++GV +GG E R ++ + G E +EF +R + +E
Sbjct: 403 DFDYDLGFATGAGTIFGV---TGGVMEAAVRTISEVITGTQRE-KIEFMPVRGLAGVKEA 458
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ + G+T L+ A+ G +N I+ ++K Y F+EVM CP GC+ GGGQ P
Sbjct: 459 EITLNGQT-LRLAVVSGARNAARIMEQIKDGSSPYHFIEVMGCPGGCIAGGGQPLPVMST 517
Query: 410 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L I E + +NP ++++Y+++L +P A + +HT Y
Sbjct: 518 EIQNRARGLYAID-EGKAVRKSHENPAIKAVYEQFLTEPNGHLAHELLHTHY 568
>gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
Length = 441
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 211/428 (49%), Gaps = 38/428 (8%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSP 98
VS S + E I + C+ C CI++ L L NI K K +I ++P
Sbjct: 43 VSCISGKIKEKHVIDTEKCVKCGQCISACPMGALPTIDFTLNLKNILNKKNKLIIAQVAP 102
Query: 99 QSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
RA+L E+FG+ P V KL + L++LG +FDT + DLT++E EF+ R K
Sbjct: 103 SIRATLGEYFGLEPGTLVTGKLVSALRALGFDKVFDTDFAADLTIVEEATEFVHRLK--- 159
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKL 216
+ LP+L+S CPGWI + E +P S+ KSPQQ G K ++ K+
Sbjct: 160 ------NKGKLPILTSCCPGWINFFEHDFNDLADIP--STCKSPQQMFGTIAKTYLANKM 211
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
PD+I V VMPC KK EAAR + I +VD V++T E+ +L
Sbjct: 212 NINPDDIIVVAVMPCLAKKYEAARPEMTTN-------------GIRDVDIVISTKELAEL 258
Query: 277 IQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL 336
I+ ++F +LE D L G ++ G+SGG AE R A + L K I
Sbjct: 259 IKENEIDFVSLENDEFDNPLGESTGAGTIF---GASGGVAEAAIRTAYELLTKKSIP-IF 314
Query: 337 EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
EFK R + +E + + G+ ++K A+ G + + ++ +K + +Y +E+MAC G
Sbjct: 315 EFKETRGLEGIKEAEININGE-IIKIAIANGLDSARKVLCSIKAGEKNYHIIEIMACQGG 373
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
C+ G Q K QS E K E +YLE N L +NP V +Y E+L +P +KA
Sbjct: 374 CIGSGLQPFMKKHQSIIE--KRSEALYLEDRNKPLRKSHENPYVLKIYKEFLGEPFGKKA 431
Query: 454 KKHVHTEY 461
+ +HT Y
Sbjct: 432 HEFLHTTY 439
>gi|312144095|ref|YP_003995541.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
gi|311904746|gb|ADQ15187.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
Length = 570
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 225/437 (51%), Gaps = 55/437 (12%)
Query: 41 VSTSSKQQAEPVKISLKD-------CLACSGCITSAETVML----EKQSLDEFLSNINKG 89
+ T++ + + V + KD C C CI S T L +K+ + + L N NK
Sbjct: 168 IFTTANRGPDTVVTTFKDMGMGNVECTNCGQCILSCPTGALHEVYQKEKVWQALENENK- 226
Query: 90 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
VI+ +P R +++E F ++ +L LK LG ++FDT+ + DLT++E E
Sbjct: 227 -HVIVQTAPAVRVAISEPFSAKAGEISTGQLVAALKRLGFDAVFDTNFAADLTIMEEGTE 285
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
I R + +LP+ +S PGWI + E Y L +SS KSPQQ GA
Sbjct: 286 LINRINNKE---------TLPLFTSCSPGWIKFIEHFYPQY-LSNLSSAKSPQQMFGAVA 335
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K++ +K G PD++ V+VMPC KK EA R++ +VD VL
Sbjct: 336 KNYYAEKAGIDPDDLVVVSVMPCTAKKFEAKRKEMG-----------------SDVDYVL 378
Query: 269 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 328
TT E+ LI+ ++F +EE DK+L ++ GS+GG E R A + +
Sbjct: 379 TTRELSGLIKAAGIDFLNIEEKEYDKLLGVSSGAADIF---GSTGGVMEAALRTAYELIT 435
Query: 329 GKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 387
K +E ++F+ +R + ++ ++ +EG LK A+ +G N I++ + + ++ FV
Sbjct: 436 EKELE-KIDFEVLRGDQGIKKASVNIEGFE-LKVAVVHGLNNAHKIMKMIDEGE-EFHFV 492
Query: 388 EVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYL--ENVMLADPFKNPLVRSLYDEW 444
E MACP GCLNGGGQ P ++++ K + IY +N L +NP ++ LY+E+
Sbjct: 493 EFMACPGGCLNGGGQ----PISYDEDVVEKRRKAIYQIDKNKKLRKSHENPYIKKLYEEY 548
Query: 445 LEQPGSEKAKKHVHTEY 461
L++PGSE A + +HTEY
Sbjct: 549 LDKPGSELAHRLLHTEY 565
>gi|323141631|ref|ZP_08076513.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413896|gb|EFY04733.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 575
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 212/411 (51%), Gaps = 39/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQVF 116
C C C T ++EK D+ + IN K V++ +P R +L E GI QV
Sbjct: 193 CTYCGQCADVCPTGAIVEKDDTDKVWAAINNPEKVVVVQTAPSVRVALGEELGIPAGQVV 252
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT+ S DLT++E +EF+ R + + LPM++S
Sbjct: 253 TGKMVAALRHLGFDKVFDTNFSADLTIMEEGHEFLQRLQ---------NGGVLPMITSCS 303
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ E + +LP++S+ KSPQQ GA K + ++ G P +I V+VMPC KK
Sbjct: 304 PGWVNMIELKY-PELLPHLSTAKSPQQMFGAVAKTYFAERAGIDPAKIVSVSVMPCTAKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAARE+ YRD VD V+TT E+ +I+ ++F ALEE+ D
Sbjct: 363 AEAAREEMC------ASGYRD-------VDVVITTRELGRMIREAGIDFNALEEAEFDSP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A+ + GK + LE+ +R + RE ++V
Sbjct: 410 LGTGTGAAVIF---GTTGGVMEAALRTVAEVVAGKELP-KLEYNEVRGMEQTREAVIDVA 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG---QSP 411
G + +K A+ + ++ + ++ ++K DYQF+EVMACP GC+ GGGQ P Q
Sbjct: 466 GVS-VKVAVVHTLKSAKMMLERIKAGTADYQFIEVMACPGGCIGGGGQPVPVDASIRQKR 524
Query: 412 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+E I + L +NP +++LYD WL +P SE+A +HT YH
Sbjct: 525 REAIFNCD----RTSELRKSHENPEIKTLYDTWLGKPLSERAHSLLHTHYH 571
>gi|220929867|ref|YP_002506776.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
gi|220000195|gb|ACL76796.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
Length = 574
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/418 (32%), Positives = 211/418 (50%), Gaps = 41/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
++ ++C+ C CI L+++ E + N V++ +P R +L E FG +
Sbjct: 185 LASQECINCGQCIKICPVGALQERDDTEKVWKALENPDLHVVVQTAPAVRVALGEEFGFA 244
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ L+ LG +FDT+ S DLT+IE NE I R + + LP+
Sbjct: 245 PGTNVEGKMVAALRRLGFDKVFDTNFSADLTIIEEGNELINRIQ---------NGGKLPL 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S PGWI Y E +I +SS KSPQQ GA K + K P +++ V+VMP
Sbjct: 296 ITSCSPGWIKYCEHNYHDFI-ENLSSCKSPQQMFGAIAKSYYPTKADVDPRKVFVVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+ +GL+ ++D+V+TT E+ +I+ + FE LE+S
Sbjct: 355 CTAKKYEADREEMSV-----------DGLK--DIDAVITTRELAKMIRQAGIKFEELEDS 401
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D +L G ++G ++GG E R A L GK ++ +E+ +R D +E
Sbjct: 402 KQDSILGTYSGAGTIFG---NTGGVMEAALRTVADKLTGKSLD-CIEYTAVRGLDGIKEA 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKP 407
+ V G + K A+ G N ++ K++ + +Y F+EVM C GC+NGGGQ IK K
Sbjct: 458 TVNVAGMEI-KVAVANGTGNASKLLDKIRAGEANYHFIEVMGCEGGCINGGGQPIIKDK- 515
Query: 408 GQSPKELIKTLETIYLENVMLA----DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
S + +K L N+ ++ +NP ++ LY E+L + G KA K +HT Y
Sbjct: 516 --STTDDVKAARIKGLYNIDVSCEKRKSHENPKIQKLYAEYLGEAGGHKAHKLLHTHY 571
>gi|239905421|ref|YP_002952160.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239795285|dbj|BAH74274.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 685
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 205/414 (49%), Gaps = 43/414 (10%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
+C+ C C T ++ + +DE L+ + + K V+ ++P R L E F SP
Sbjct: 189 ECVGCGQCANVCPTGALVPRSEMDEVLTALADPTKTVVAQVAPAVRVGLGECFA-SPAGD 247
Query: 115 -VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V ++ LK LG +++DT+ + DLT+IE EF+ R ++ LP +S
Sbjct: 248 PVMGRMVAALKRLGFDAVYDTTFAADLTVIEEGQEFLTRAAAGEK---------LPQFTS 298
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGW+ +AE+ +LP +SS +SPQQ G+ +K + +K G ++ V++MPC
Sbjct: 299 CCPGWVQFAEQSF-PELLPNLSSCRSPQQMFGSLVKEMLPEKQGIARKDLIVVSIMPCTA 357
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA R +F +D P+VD VLTT E+ +I + F +LE LD
Sbjct: 358 KKFEARRPEFA--VDGS-----------PDVDFVLTTQELARMIDGAGLRFNSLEPESLD 404
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREVALE 352
G ++G +SGG E V R AA+ + GK + ++F +R +S RE LE
Sbjct: 405 MPFGFGTGAGVIFG---ASGGVTEAVLRFAAEKITGKPL-ASVDFAEVRGDSGLREATLE 460
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP----G 408
V GKTL + A+ +G N + + +V +Y +EVMACP GC+ G GQ PK
Sbjct: 461 VGGKTL-RLAIVHGLANARAVAEQVVAGNSEYDLIEVMACPGGCIGGAGQPVPKDLADRK 519
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ K+L + +T L N V YD++L G KA +HT Y
Sbjct: 520 RRTKDLYQCDKTFPLHKAQ-----DNMFVTECYDKFLGDVGGHKAHSLLHTHYQ 568
>gi|20807375|ref|NP_622546.1| NADH dehydrogenase/NADH:ubiquinone oxidoreductase subunit G
[Thermoanaerobacter tengcongensis MB4]
gi|20515894|gb|AAM24150.1| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit
(chain G) [Thermoanaerobacter tengcongensis MB4]
Length = 581
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 227/430 (52%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + + K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIMVCPVGAIYEKDHTKRVYEALADDKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G ++FDT+ + DLT++E +E + R K L
Sbjct: 245 -PVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGSELLERIKHG---------GKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P +I+ V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLDPKDIFVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE RE+ + G++ +VD+VLTT E+ +I+ ++F L+
Sbjct: 354 MPCTAKKLEIEREEMI-----------RNGMK--DVDAVLTTRELARMIKEMGIDFVNLK 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A+ + G+ I G ++F+ +R + R
Sbjct: 401 DEEFDEPLGMSTGAGAIFG---ATGGVMEAALRTVAEIVEGRDI-GKIDFEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E + ++G + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATITIDGMDI-KIAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKEL--IKTL--ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ +K L + IY +N+ + +NP ++ LY+E+L P SEK+ + +HT Y
Sbjct: 512 IHNPNEMEEVKKLRAKAIYEIDKNLPIRKSHENPAIKRLYEEFLGYPLSEKSHELLHTHY 571
Query: 462 -----HPVVK 466
+P+VK
Sbjct: 572 SRKELYPLVK 581
>gi|160935017|ref|ZP_02082403.1| hypothetical protein CLOLEP_03893 [Clostridium leptum DSM 753]
gi|156866470|gb|EDO59842.1| hydrogenase, Fe-only [Clostridium leptum DSM 753]
Length = 366
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 196/381 (51%), Gaps = 36/381 (9%)
Query: 90 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 147
K V++ +P RA+L E FG+ P+ V K+ L+ LG +FDT D+T++E +
Sbjct: 10 KHVVVQTAPSVRAALGEEFGM-PIGTNVEGKMVAALRRLGFDKVFDTDFGADMTIMEEAH 68
Query: 148 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
EFI R + + LP+++S PGWI + E +LP +SS KSPQQ GA
Sbjct: 69 EFIDRVQ---------NGGVLPLITSCSPGWIKFCEFYY-PELLPNLSSCKSPQQMQGAL 118
Query: 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 267
IK + P +I V+VMPC KK E +R+D + +P+VD V
Sbjct: 119 IKTWYAETHNIDPKDIVSVSVMPCTAKKFEISRDD-------------ENAAGVPDVDVV 165
Query: 268 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 327
LT E+ +I+ ++ L + D + ++G ++GG E R AA TL
Sbjct: 166 LTVRELARMIKRANIDLTMLPDEKFDPTMDVSTGAAVIFG---ATGGVMEAALRTAADTL 222
Query: 328 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
GK ++ ++++ +R +D +E V G + K A+ G N I++KVK + DY F
Sbjct: 223 TGKSLDS-IDYEEVRGTDGIKEAVYNVAGMDV-KVAVASGLSNANEILKKVKNGEADYHF 280
Query: 387 VEVMACPSGCLNGGGQ-IKPKPGQSPKELIKTLETIYLE---NVMLADPFKNPLVRSLYD 442
+E+M CP GC+NGGG I+P ++ ++ K + E N+ L NP+V+ Y
Sbjct: 281 IEIMCCPGGCVNGGGMPIQPSSVRNFVDIRKERAKVLYEEDKNLPLRKSHDNPVVKKCYA 340
Query: 443 EWLEQPGSEKAKKHVHTEYHP 463
E+L +PGS KA + +HT Y P
Sbjct: 341 EYLGEPGSHKAHEILHTTYTP 361
>gi|167772589|ref|ZP_02444642.1| hypothetical protein ANACOL_03968 [Anaerotruncus colihominis DSM
17241]
gi|167665067|gb|EDS09197.1| hydrogenase, Fe-only [Anaerotruncus colihominis DSM 17241]
Length = 584
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 209/414 (50%), Gaps = 40/414 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQV 115
C++C CI T + EK DE + +N K V++ +P RA+L E FG+ V
Sbjct: 194 CVSCGQCIVVCPTGAIYEKDQTDEVWAALNDPSKHVVVQTAPSIRATLGEAFGMPVGTNV 253
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ +G + +FDT + D+T++E +EF+ R K + LPM++S
Sbjct: 254 TGKMVAALRRIGFEKVFDTDLAADMTIVEEAHEFVERVK---------NGGVLPMITSCS 304
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E ++P +S+ KSPQQ GAT+K +K+G+ +I V VMPC KK
Sbjct: 305 PGWIKYCE-HYHPDMIPNLSTCKSPQQMFGATVKTWYAEKMGWDKKDIVVVGVMPCTAKK 363
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R+D E+ G IP+VD LTT E+ +I + F L + D
Sbjct: 364 FEVRRDD--------EDA---AGSGIPDVDIALTTREIARMIDRAGIQFTELPDEEFDSP 412
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVE 354
+ ++ G++GG E R AA+ + GK +E +EF +R + +E + ++
Sbjct: 413 MGESTGASVIF---GATGGVMEAALRTAAEWVGGKPLE-QVEFTDVRGTAGVKEASYQI- 467
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G + A+ G N + ++ +VK +Y F+E+M CP GC+NGGGQ P S +
Sbjct: 468 GDLTVNVAVASGLANAKKLLEQVKRGMKNYHFIEIMGCPGGCVNGGGQ--PVQPASVRNF 525
Query: 415 IKTLETIYLENVMLADPFK-------NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L++I + + AD K NP + ++Y E+ + GS A + +HT Y
Sbjct: 526 VD-LKSIRAKALYDADEAKTLRKSHENPALLTIYKEYFGEFGSHLAHRILHTSY 578
>gi|443923185|gb|ELU42459.1| nuclear prelamin A recognition factor-like protein [Rhizoctonia
solani AG-1 IA]
Length = 549
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 163/504 (32%), Positives = 235/504 (46%), Gaps = 121/504 (24%)
Query: 13 DLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETV 72
DL+DFI PSQ C+ +++ KPQ QQ E + + I SA
Sbjct: 13 DLNDFITPSQACIKPVEEV------KPQ------QQIE-------NAASTQIGIDSAGVY 53
Query: 73 MLE----------KQSLDEFLSNINKG--------KAVIISLSPQSRASLAEHFGISP-- 112
E +QS +E L + K+ ++S++PQ ASLA ISP
Sbjct: 54 YEESHQDSGRKKLQQSHEEVLKVVESNPSPLHPDHKSFVLSIAPQCLASLAA--SISPSA 111
Query: 113 --LQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES---DDERSNS 166
Q+ +++ F S LG ++DT+ +R + L+E EF R S S D++ ++
Sbjct: 112 TTQQILRRVEVFASSILGFSHVYDTTFARHIALLEHTREFFERRDSSTSSNLSDNKPGDT 171
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI--GATIKHHICQKLGFRPDEIY 224
LPM++SACPGW+CY EK I P++S KSPQQ + A I+ + FR + IY
Sbjct: 172 RLPMIASACPGWVCYVEKAHPEMI-PFLSRTKSPQQVMVSCAFIRTADLIQGAFRANSIY 230
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
HVTVMPCYDKKLEA+R+DF Y D L +VD VLTT E+ L++ K +
Sbjct: 231 HVTVMPCYDKKLEASRQDF----------YNDI-LSTRDVDCVLTTTELEILMRDKGWDI 279
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
A + + NV++ G L +A G + + + ++ + K IR +
Sbjct: 280 SAPVPGEDETRMPNVEN-GILPELAQHPGSSSGSYLQSLIDSVSLSAKSPSVSTKAIRTT 338
Query: 345 DFRE--VALEVEGKTLLKFALCYGFQNLQNIVRKV------------------KMRKC-- 382
D+ E V EV+G+ L + A CYGF+NLQNIVRKV + R+
Sbjct: 339 DYEEYTVTDEVDGRVLFRGAKCYGFRNLQNIVRKVGRDTGVSVGRGAAGRVATRGRRVVG 398
Query: 383 -------------DYQFVEVMACPSGCLNGGGQIKPKPGQSP------------------ 411
Y +VEVMACP+GC+NGGGQ+ + G P
Sbjct: 399 ATARKGSQAEEPRSYDYVEVMACPAGCVNGGGQL--RGGARPQTTDGFDGVSESAAARDA 456
Query: 412 ----KELIKTLETIYLENVMLADP 431
K+L+K +E IY V P
Sbjct: 457 RWGDKQLVKDVEAIYWGGVWTPPP 480
>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
Length = 443
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 213/427 (49%), Gaps = 36/427 (8%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQS-LDEFLSNIN-KGKAVIISLSP 98
VS S + E I C+ C CI++ L K + + E +N K K VI ++P
Sbjct: 45 VSCISGKVKERHVIDTTKCVKCGQCISACPMGALPKINFISEAKKALNQKDKLVITQVAP 104
Query: 99 QSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
RA+L E+FG+ P V K+ L+++G +FDT + DLT++E EF R K
Sbjct: 105 AIRATLGEYFGLEPGTLVTGKMVAALRAIGFDKVFDTDFAADLTIMEEATEFAHRLKHG- 163
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
LP+L+S CPGWI + E + SS KSPQQ G K + QK+
Sbjct: 164 --------GKLPILTSCCPGWINFFEHDFRD-LADIPSSCKSPQQMFGTIAKTYFAQKMN 214
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P +I V++MPC KK EAAR + + RD VD V++T E+ +LI
Sbjct: 215 IEPKDIIVVSIMPCLAKKYEAARPEMT------TDGTRD-------VDIVISTQELAELI 261
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ ++F +LE+ DK L G ++ G+SGG AE R A + + + I LE
Sbjct: 262 KENNIDFNSLEDDDFDKPLGESSGAGTIF---GTSGGVAEAAIRTAYELITNETIPA-LE 317
Query: 338 FKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 396
FK +R + +E +E+ G+ +K A+ G + ++ ++ + +Y +E+MAC GC
Sbjct: 318 FKGVRGLNGLKEAEVEINGEK-IKIAIANGLATARELLNSIRNGEKNYHLIEIMACQGGC 376
Query: 397 LNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAK 454
+ G Q P + K E +Y E+ L +NP V +Y+E+L +P EKA
Sbjct: 377 IGSGMQ--PFIKNHCNIIQKRSEALYSEDRHKTLRKSHENPYVLKIYEEFLGEPYGEKAH 434
Query: 455 KHVHTEY 461
K++HTEY
Sbjct: 435 KYLHTEY 441
>gi|326204155|ref|ZP_08194015.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325985666|gb|EGD46502.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 574
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 206/415 (49%), Gaps = 41/415 (9%)
Query: 57 KDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-L 113
+DC+ C CI L E+ D+ + N V++ +P R +L E FG +P
Sbjct: 188 QDCINCGQCIKICPVGALQERDDTDKVWKALENPELHVVVQTAPAVRVALGEEFGFAPGT 247
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ T L+ LG +FDT+ S DLT+IE NE I R + + LPM++S
Sbjct: 248 NVEGKMVTALRRLGFNKVFDTNFSADLTIIEEGNELIERIQ---------NGGKLPMITS 298
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI + E +I +SS KSPQQ GA K + K P ++ V+VMPC
Sbjct: 299 CSPGWIKFCEHNYHDFI-ENLSSCKSPQQMFGAIAKSYYPVKADVDPKSMFVVSVMPCTA 357
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA RE+ +GL+ ++D+V+TT E+ +I+ + F LE+S D
Sbjct: 358 KKYEADREEMSV-----------DGLK--DIDAVITTRELAKMIRQAGIKFAELEDSKQD 404
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE 352
+L G ++G ++GG E R A L GK ++ +++ +R RE +
Sbjct: 405 SILGTYSGAGTIFG---NTGGVMEAALRTVADKLTGKSLD-CIDYTAVRGLEGIREATVN 460
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKPGQS 410
+ +K A+ G N ++ K++ + +Y F+EVM C GC+NGGGQ IK K S
Sbjct: 461 I-ADMEIKVAVANGTGNASKLLDKIRAGEANYHFIEVMGCEGGCINGGGQPIIKDK---S 516
Query: 411 PKELIKTLETIYLENVMLA----DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E +KT L N+ + +NP ++ LY E+L + G KA K +HT Y
Sbjct: 517 TTEAVKTARIKGLYNIDASCEKRKSHENPEIQKLYSEYLGEAGGHKAHKLLHTHY 571
>gi|424834421|ref|ZP_18259132.1| [Fe] hydrogenase [Clostridium sporogenes PA 3679]
gi|365978767|gb|EHN14836.1| [Fe] hydrogenase [Clostridium sporogenes PA 3679]
Length = 577
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 209/413 (50%), Gaps = 40/413 (9%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKVVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMNIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L++
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQKEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D L ++ G++GG E R A + + ++ +EF +R + RE +
Sbjct: 410 DNPLGESTGASVIF---GTTGGVMEAALRTAYEWVTEDTLK-DVEFTEVRGEEGIREATV 465
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
++ +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 466 NIK-DIEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIYGDT 522
Query: 412 KELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +NP ++ LY+E+L +P EKA + +HT+Y
Sbjct: 523 NILKKRTEALYKEDSNKKIRKSHENPYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|397689636|ref|YP_006526890.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
gi|395811128|gb|AFN73877.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
Length = 672
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 209/411 (50%), Gaps = 37/411 (9%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C T + K +D+ I N K V+ ++P R ++ E FG P +
Sbjct: 189 DCVDCGQCARVCPTASITPKYEVDKVWKEIENPDKVVVAQIAPAVRVAIGELFGFKPGAL 248
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ LK +G +FDTS + DLT+IE NEFI R ++ + LP+ +S
Sbjct: 249 LTGQIVNALKMIGFDKVFDTSFAADLTVIEEANEFIQR---------KQEDYKLPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + E ++ +SS KSPQQ G+ K + + L + + + V++MPC K
Sbjct: 300 CPGWVKFVE-YYHPELITNLSSCKSPQQMFGSVAKEILPELLNIKKENLAVVSIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R +F + G I EVD VLTT E+ +I+ + FE L PLD
Sbjct: 359 KAEAKRPEF------------NHG-GIKEVDYVLTTVELAAMIKEAGIKFENLTPEPLDM 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G +SGG +E V R+A + L G+ + EFK +R SD R LE+
Sbjct: 406 PMGFKSGAGVIFG---NSGGVSEAVARYAYEKLTGQKL-FDFEFKQLRGSDALRTAELEL 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T ++ A+ G +N +++K+K ++ +Y +EVMACP GC+ G GQ P +S +
Sbjct: 462 NG-TKIRMAIVSGLKNASELIKKLKNKEAEYDIIEVMACPGGCIAGAGQ--PYTTESDNK 518
Query: 414 LIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K +Y + + L NP V LY L +P S KA +HT+Y+
Sbjct: 519 C-KRASALYESDKTLQLHKSQDNPYVSELYSSLLGEPNSRKAHSLLHTKYY 568
>gi|169247661|gb|ACA51661.1| HydA [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 584
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 216/411 (52%), Gaps = 38/411 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C++C CI + + ++ + + + +++ K V++ +P R +L E FG+ +
Sbjct: 194 CISCGQCIEACPVGAIYEKDHTKIVYDALLDEKKYVVVQTAPAVRVALGEEFGMPYGSIV 253
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ + LK LG +FDT + DLT+IE NE + R + LPM++S
Sbjct: 254 TGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRLNEG---------GKLPMITSCS 304
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E+ +I +S+ KSP +GA IK + +K G P +I+ V++MPC KK
Sbjct: 305 PGWINYCERYYPEFI-DNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKK 363
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + +G++ +VD+VLTT E+ +I+ ++F L +S D
Sbjct: 364 YEIDRPQMIV-----------DGMK--DVDAVLTTRELARMIKQSGIDFVNLPDSEYDNP 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L G ++G ++GG E R A + GK IE + E++ +R + +E +++
Sbjct: 411 LGESSGAGVIFG---ATGGVMEAALRTVADIVEGKDIE-NFEYEEVRGLEGIKEAKIDIG 466
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
GK + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P + K+L
Sbjct: 467 GKEI-KIAVANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNE--KDL 523
Query: 415 IK--TLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L+ IY +++ + KNP++ LY+E+L P EK+ +HT Y
Sbjct: 524 VRKSRLKAIYEADKDLPIRKSHKNPMITKLYEEFLISPLGEKSHHLLHTTY 574
>gi|404370031|ref|ZP_10975358.1| hydrogenase, Fe-only [Clostridium sp. 7_2_43FAA]
gi|226913838|gb|EEH99039.1| hydrogenase, Fe-only [Clostridium sp. 7_2_43FAA]
Length = 575
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 221/419 (52%), Gaps = 39/419 (9%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQS----LDEFLSNINKGKAVIISLSPQSRASLAEHFG 109
I+ +C C C+ T L ++S + E L + NK V++ ++P R++LAE FG
Sbjct: 188 INETNCTYCGQCVAVCPTGALREKSDYKKVWEILDDNNK--YVVVQIAPAVRSALAEEFG 245
Query: 110 ISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
+ ++ K+ T LK L S+FDT+ + DLT++E NEFI R+ + +L
Sbjct: 246 LESGELSTGKIVTALKLLSFDSVFDTNFAADLTIMEEANEFIERFTLGE---------NL 296
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S CP WI Y+E L +SS KSPQQ GA K+++ Q+L + + + V++
Sbjct: 297 PLITSCCPAWINYSESNYYDN-LNLVSSCKSPQQMFGAIAKNYLPQELSIKRENLAVVSI 355
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA R++ +D I +VD V+TT E+ +I+ ++ L
Sbjct: 356 MPCIAKKHEANRKEMQ-DIDG-----------IKDVDLVITTRELAKIIKEAGIDIVNLH 403
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D L G ++ G+SGG E R A + + GK +E ++F+ +R + +
Sbjct: 404 DSEFDNPLGMSSGAGTIF---GTSGGVMEAALRTAYEWITGKELE-KIDFENVRGLEGIK 459
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E +++ GK + A+ N + I+ ++K Y F+EVMACP GC++GGGQ P
Sbjct: 460 EAKVDLNGKE-VNVAVVSSLGNAKKIMDEIKYGNSKYHFIEVMACPGGCIDGGGQ--PFI 516
Query: 408 GQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 464
+ L K + +IY E N ++ +NP+++ LY ++L++P S A +H Y +
Sbjct: 517 KSNRDVLKKRMNSIYNEDKNKVIRKSHENPMIQKLYKDYLQKPNSYIAHHILHVNYKRI 575
>gi|390935224|ref|YP_006392729.1| hydrogenase, Fe-only [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570725|gb|AFK87130.1| hydrogenase, Fe-only [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 581
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 216/411 (52%), Gaps = 38/411 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C++C CI + + ++ + + + +++ K V++ +P R +L E FG+ +
Sbjct: 191 CISCGQCIEACPVGAIYEKDHTKIVYDALLDEKKYVVVQTAPAVRVALGEEFGMPYGSIV 250
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ + LK LG +FDT + DLT+IE NE + R + LPM++S
Sbjct: 251 TGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRLNEG---------GKLPMITSCS 301
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E+ +I +S+ KSP +GA IK + +K G P +I+ V++MPC KK
Sbjct: 302 PGWINYCERYYPEFI-DNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKK 360
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + +G++ +VD+VLTT E+ +I+ ++F L +S D
Sbjct: 361 YEIDRPQMIV-----------DGMK--DVDAVLTTRELARMIKQSGIDFVNLPDSEYDNP 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L G ++G ++GG E R A + GK IE + E++ +R + +E +++
Sbjct: 408 LGESSGAGVIFG---ATGGVMEAALRTVADIVEGKDIE-NFEYEEVRGLEGIKEAKIDIG 463
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
GK + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P + K+L
Sbjct: 464 GKEI-KIAVANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNE--KDL 520
Query: 415 IK--TLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L+ IY +++ + KNP++ LY+E+L P EK+ +HT Y
Sbjct: 521 VRKSRLKAIYEADKDLPIRKSHKNPMITKLYEEFLISPLGEKSHHLLHTTY 571
>gi|187438956|gb|ACD10930.1| [FeFe]-hydrogenase [Blastocystis sp. NandII]
Length = 758
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 213/416 (51%), Gaps = 39/416 (9%)
Query: 56 LKD--CLACSGC-ITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
LKD C++C C + ++E+ + + GK +++ +P +R + E+FG P
Sbjct: 195 LKDTECISCGQCNVVCPTGAIVEQSHIPRVKQAMKAGKVMVMQTAPATRVAFGENFGREP 254
Query: 113 LQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
++ K+ K+LG + +FDT+ D+T++E E + R K +N PM
Sbjct: 255 GEITTGKMIACAKALGFQYVFDTNFGADMTIMEEGTELLERIK---------NNGPFPMF 305
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+S CPGW+ AEK ILP +SS +SP +G+T+K + +K+ +P++IY V++MPC
Sbjct: 306 TSCCPGWVNMAEKCY-PEILPNLSSCRSPHMMVGSTLKTYWAKKMNLKPEDIYVVSLMPC 364
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV-NFEALEES 290
KK E R++ + DE + P VD+VLTT E+ D + + + N++ + E
Sbjct: 365 TAKKDEIERKNM----------WLDE--KTPFVDAVLTTKELGDFCKQEGITNWDNMAEM 412
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
P D L G ++GV SGG E R A + GK +E + + + +
Sbjct: 413 PFDTPLGTSSGAGDIFGV---SGGVMEAALRTAYQLQTGKPLEKIVVDEARGLDGTKRFS 469
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+++ GK + + F + +V VK K D QFVE MACP GC++GGGQ P +
Sbjct: 470 VDMNGKKINCAVVHSKFA--RELVENVKAGKEDLQFVEAMACPGGCISGGGQ----PHSN 523
Query: 411 PKELI-KTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ I K + IY + L NP +++LY E+ E+P S KA + +HT Y P
Sbjct: 524 RADTIEKRMNAIYKIDAGKTLRRSMDNPEIQTLYKEFFEKPNSHKAHELLHTTYAP 579
>gi|89893682|ref|YP_517169.1| hypothetical protein DSY0936 [Desulfitobacterium hafniense Y51]
gi|423075239|ref|ZP_17063956.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
gi|89333130|dbj|BAE82725.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361853713|gb|EHL05848.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
Length = 1150
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 214/424 (50%), Gaps = 44/424 (10%)
Query: 58 DCLACSGCITSAETVMLEKQS-LDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV 115
DC++C C+ + L+ +S + +N GK + ++P R+ ++ +G+S +
Sbjct: 671 DCVSCGQCVNACPCGALDYRSEIGRVFRALNDLGKTTVAFVAPAVRSVVSSQYGVSYQEA 730
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ + LK +G +FD + + DLT++E EF+ R + S+ +P +S C
Sbjct: 731 SRFIAGLLKKIGFDKVFDFTFAADLTIVEETTEFLTRLQ---------SHKRIPQFTSCC 781
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E++ I+PY+SS KSPQ +GAT+K+H + P ++Y V+++PC KK
Sbjct: 782 PGWVNFVERRYPE-IIPYLSSCKSPQMMMGATVKNHFTELSEIDPKDLYVVSIVPCIAKK 840
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F I +VD+VLT+ E+L++ +K + +E +
Sbjct: 841 YEAARPEFATD-------------GIRDVDAVLTSTEMLEMADIKLIEPADVESQDFCEP 887
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
V G L+ G+SGG AE R A + L G+ I L+++ +R +E A+E +
Sbjct: 888 YKRVSGAGILF---GASGGVAEAALRMAVEKLTGEAITDRLDYQEVRGLQGIKEAAVEAK 944
Query: 355 GKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
GK + A+ G N++ I+ K ++ + Y +EVMACP GC+ G G P E
Sbjct: 945 GKK-VNVAVISGLHNVEPILEKIIQGTEVGYDLIEVMACPGGCICGAGHPVP-------E 996
Query: 414 LIKTLETI--YLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
I TLE L N+ ++ NP + LYDE+ + S A K +HT Y V +
Sbjct: 997 KIDTLEKRQQVLVNIDQTSRYRKSQENPDILRLYDEYYGEANSPLAHKLLHTHYEAVKRE 1056
Query: 468 ITAQ 471
A+
Sbjct: 1057 PVAK 1060
>gi|227499382|ref|ZP_03929493.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098]
gi|227218586|gb|EEI83826.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098]
Length = 577
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 216/409 (52%), Gaps = 37/409 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVF 116
C C C++ T + EK ++ E + K VI+ ++P R SLAE FG+ L V
Sbjct: 194 CTFCGQCLSVCPTGALTEKNNVAEVWKLLASDKHVIVQVAPAVRVSLAEMFGMEVGLNVE 253
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ LK+LG +FDT+ + DLT++E NEFI R K LP+L+S CP
Sbjct: 254 GKIVRALKTLGFSKVFDTNFAADLTIMEEANEFIHRLK---------GEGRLPILTSCCP 304
Query: 177 GWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
W+ + E+Q I +P SS KSP + GA K + +K G P +I V+VMPC KK
Sbjct: 305 AWVNFMEQQFSDMIDIP--SSCKSPHEMFGAIAKSYYAKKEGIDPKDIVVVSVMPCISKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R++ + E + D VD+V+TT E+ +I+ ++F +LE+ D
Sbjct: 363 YEAKRDEL------ENEGFSD-------VDTVITTRELAQMIKEVGIDFASLEDQAFDNP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ G ++G +SGG E R A L GK +E +EF+ R + + +++++
Sbjct: 410 MGESTGAGDIFG---TSGGVIEATVRTAYDMLTGKELE-KVEFRDFRGLEGIKYASVDID 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ + K A+ G N + ++ K+K ++ D +EVMACP GC+ GGGQ P L
Sbjct: 466 GREI-KIAVANGLGNTRKLLEKLKNKEIDLDAIEVMACPGGCIGGGGQ--PFHHGDLSIL 522
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +Y E+ L ++NP ++ LYDE+L +PGS+KA +HT Y
Sbjct: 523 KRRSNALYQLDESKKLRKSYQNPYIKKLYDEFLGEPGSDKAISLLHTSY 571
>gi|158319966|ref|YP_001512473.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
gi|158140165|gb|ABW18477.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
Length = 578
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 212/418 (50%), Gaps = 39/418 (9%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C C CIT+ + EK+++ + I +K K V++ +P RA+L E FGI
Sbjct: 181 SLDDVFCTNCGQCITACPVGALYEKENIKDVWKAIYDKEKYVVVQTAPAIRAALGEEFGI 240
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ LG +FDT + DLT++E E I+R S +L
Sbjct: 241 -PVGTSVTGKMVAALRRLGFDKVFDTDFTADLTIMEEGTELISRLT---------SGENL 290
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S CPGWI +AE +L +S+ KSP + GA IK + +K+ P +I V++
Sbjct: 291 PLMTSCCPGWIKFAE-HFYPDMLDNLSTCKSPHEMEGALIKSYFAEKMAMDPKKIVTVSI 349
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK E+AR + ++GL+ +VD VLTT E+ +I+ ++FE L
Sbjct: 350 MPCTAKKFESARGEL-----------SNDGLQ--DVDLVLTTRELARMIKEAGIDFENLP 396
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
D ++GV +GG AE R + L GK +E + + +R + +
Sbjct: 397 VEEFDNPFGESTGAAVIFGV---TGGVAEAALRTVFEILSGKELE-TVNYTAVRGLEGVK 452
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKP 405
E +E+ + + +G N + + V+ + Y F+EVMACP GC+ GGGQ +
Sbjct: 453 EAVIELPNGMTINSIVAHGLGNARKALDVVRNGEKQYHFIEVMACPGGCVTGGGQPIVDS 512
Query: 406 KPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ IY E+ +L KNP + +Y+E+LE P SE + KH+HT Y
Sbjct: 513 EYRMDHDIRLQRASAIYAEDESKVLRKSHKNPYITKIYEEFLEAPNSEVSHKHLHTHY 570
>gi|442804403|ref|YP_007372552.1| Fe only hydrogenase 1 [Clostridium stercorarium subsp. stercorarium
DSM 8532]
gi|442740253|gb|AGC67942.1| Fe only hydrogenase 1 [Clostridium stercorarium subsp. stercorarium
DSM 8532]
Length = 587
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 218/425 (51%), Gaps = 39/425 (9%)
Query: 49 AEPVKISLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A P ++LKD C+ C CI L EK S+++ + N V++ +P R ++
Sbjct: 179 ASPFNMALKDTPCVNCGQCINVCPVGALREKSSIEKVWDALANPDLHVVVQTAPAVRVAI 238
Query: 105 AEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 162
E FG+ P+ + K+ LK LG +FDT DLT++E NE I R K
Sbjct: 239 GEEFGL-PIGTRCTGKMVAALKRLGFDKVFDTDTGADLTIMEEGNELIQRIK-------- 289
Query: 163 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
+ LPM++S PGWI + E +L +S+ KSPQ GA +K + +K+G P +
Sbjct: 290 -NGGKLPMITSCSPGWIKFCEHNYPD-LLDNLSTCKSPQNMFGALLKSYYAEKMGIDPSK 347
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
I+ V+VMPC KK E R + P+VD +TT E+ +I+ +
Sbjct: 348 IFVVSVMPCTAKKFEIQRPELA-------------STGYPDVDVSITTRELARMIKEAGI 394
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
+F L + D + G ++G ++GG E R L G+ + ++E+K +R
Sbjct: 395 DFVNLPDEEFDDPMGEASGAGVIFG---ATGGVMEAALRTVVDKLTGRDND-NIEYKEVR 450
Query: 343 NSDFREVA-LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
+ +VA + + ++ A+ +G N + ++ +V+ + Y F+E+MACP GC+NGGG
Sbjct: 451 GEEGIKVAEVTLPDGMTIRAAVAHGLGNARKLLDQVRNGEAQYHFIEIMACPGGCVNGGG 510
Query: 402 Q-IKPKPGQSPKEL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
Q I+P ++ ++ + + +Y E+ + + KNP ++ +Y+E+L +PGS KA + +
Sbjct: 511 QPIQPARVRNTIDIRTERAKGLYSEDEAMTIRKSHKNPRIQKIYEEFLGEPGSHKAHELL 570
Query: 458 HTEYH 462
HT Y+
Sbjct: 571 HTHYY 575
>gi|120602429|ref|YP_966829.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
gi|120562658|gb|ABM28402.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
Length = 606
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 209/417 (50%), Gaps = 40/417 (9%)
Query: 55 SLKDCLACSGC-ITSAETVMLEKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISP 112
S DC+ C C + + + ++ + + + V + +P R L E FG+ P
Sbjct: 191 SASDCVGCGQCTLVCPVGALAGRDDVERVIDYLYDPEIVTVFQFAPAVRVGLGEEFGLPP 250
Query: 113 -LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
V ++ T L+ LG + DT+ + DL ++E E + R R + LP+
Sbjct: 251 GSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQRL---------RGGAKLPLF 301
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+S CPGW+ +AEK L ILP++S+ +SPQQ +GA K ++ + + P+ + V++MPC
Sbjct: 302 TSCCPGWVNFAEKHLPD-ILPHVSTTRSPQQCLGALAKTYLARTMNVAPERMRVVSLMPC 360
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EAAR +F R +G+ +VD+VLTT E L++ + ++ LE SP
Sbjct: 361 TAKKEEAARPEF-----------RRDGVR--DVDAVLTTREFARLLRREGIDLAGLEPSP 407
Query: 292 LDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFR 347
D L G G A G++GG E R L GK + +E +R + R
Sbjct: 408 CDDPLM-----GRATGAAVIFGTTGGVMEAALRTVYHVLNGKEL-APVELHALRGYENVR 461
Query: 348 EVALEV-EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
E + + EG +K A+ +G + + +V V K D+ FVEVMACP GC++GGGQ + K
Sbjct: 462 EAVVPLGEGNGSVKVAVVHGLKAARQMVEAVLAGKADHVFVEVMACPGGCMDGGGQPRSK 521
Query: 407 PGQSPKELIK--TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P + L ++ EN L NPL+ +Y+ +L +P S + + +HT Y
Sbjct: 522 RAHNPNAQARRAALFSLDAENA-LRQSHNNPLIGKVYESFLGEPCSNLSHRLLHTRY 577
>gi|402836885|ref|ZP_10885416.1| [FeFe] hydrogenase, group A [Mogibacterium sp. CM50]
gi|402269901|gb|EJU19170.1| [FeFe] hydrogenase, group A [Mogibacterium sp. CM50]
Length = 584
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 208/415 (50%), Gaps = 44/415 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI S + EK S+ + + I + K VI+ +P +R ++AE F P+ +
Sbjct: 192 CVNCGQCIVSCPVGALYEKDSVTQVMEAIEDPDKYVIVQAAPSTRVAIAECFD-QPIGTE 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
KL+ L LG +FDT+ S DLT++E NE I R R LPM++S
Sbjct: 251 AEGKLSAALHRLGFDRVFDTNFSADLTIVEEANELIERV---------RGGGVLPMITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E ++P +S+ KSPQQ GA K + + +G D I V+VMPC K
Sbjct: 302 SPGWVKFCEHYYPD-LIPNLSTCKSPQQMFGAVTKSYYAEVMGIPADRIVSVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D ++ Y+D VD +TT E+ +I+L + F LE+ P D
Sbjct: 361 KHELGRND------QGQDGYQD-------VDFSITTRELAKMIRLAGIEFMKLEDEPYDN 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L G ++G ++GG E R A + L G + +L+F +R +E ++
Sbjct: 408 PLGEYTGAGVIFG---ATGGVMEAALRTAVEKLTGDELI-NLDFVDVRGVKGVKEAEYDL 463
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G+ + K A+ G N + I+ KVK + DY F+E+M CP GC+NGGGQ P +
Sbjct: 464 QGQKV-KVAVASGLANARVILDKVKAGEADYTFIEIMGCPGGCVNGGGQ--PHVDSQIRN 520
Query: 414 LI-------KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K L T+ +N + +NP++ +Y+++ PG E+A +HT Y
Sbjct: 521 FMDVRAERAKGLYTLD-KNAPIRKSHENPVIVKMYEDYFGVPGGERAHHLLHTTY 574
>gi|157364204|ref|YP_001470971.1| hydrogenase, Fe-only [Thermotoga lettingae TMO]
gi|157314808|gb|ABV33907.1| hydrogenase, Fe-only [Thermotoga lettingae TMO]
Length = 583
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 49/438 (11%)
Query: 47 QQAEPVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASL 104
Q A + + DC+AC C + E ++ + L + + K +++ +P +R +L
Sbjct: 179 QTAFEMPVYETDCIACGQCSAFCPVGAITENSNVRKVLEELERHDKVLVVQTAPATRVAL 238
Query: 105 AEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E FG+ P + K+ L+ LG +FDT+ + DLT++E +EF+ R K
Sbjct: 239 GEEFGLEPGSISTGKMVAALRKLGFDYVFDTNFAADLTIMEEGSEFLERLK--------- 289
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ PM +S CP W+ AEK L L +SS KSP Q +G +K + +K G P+ I
Sbjct: 290 NGGPFPMFTSCCPAWVNMAEK-LYPQFLKNLSSAKSPHQMLGPLVKTYFAKKKGIDPENI 348
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V++MPC KK + R + +P VD VLTT E+ LI++K +
Sbjct: 349 LVVSIMPCTAKKDDIIRPQHMVN-------------GMPGVDIVLTTRELGKLIKMKKIP 395
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
+ +L + D L ++GV +GG E R A + GK + +EF +R
Sbjct: 396 YASLPDEEYDSPLGESTGAAAIFGV---TGGVMEAALRTAYELGLGKPLP-KVEFTNVRG 451
Query: 344 SD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
D +E ++ +GK L K A+ +G N++ ++ K+ + Y FVE+MACP+GC+ GGGQ
Sbjct: 452 FDGIKEATIDFDGKQL-KVAVAHGGANVRKLLDKITSGEVYYDFVEIMACPAGCIGGGGQ 510
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLAD-------PFKNPLVRSLYDEWLEQPGSEKAKK 455
PK L K + T +E + D +NP ++ LY+E+LE P S + +
Sbjct: 511 --------PKSLDKNVLTRRMEGIYTIDERSTIRKSHENPSIKKLYEEFLEHPLSHVSHE 562
Query: 456 HVHTEYHPVVKSITAQLH 473
+HT Y V +S +++H
Sbjct: 563 LLHTTY--VDRSKKSKIH 578
>gi|345570856|gb|EGX53675.1| hypothetical protein AOL_s00006g65 [Arthrobotrys oligospora ATCC
24927]
Length = 592
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 233/494 (47%), Gaps = 112/494 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKP-QVSTSSKQQA-----EPVKISL 56
S L DL+DFI+P C+ V A P P +V+T K A + +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAAPSEPSNPYEVTTEDKVTATEAKLQAAQISL 60
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLSNI---------------------------NKG 89
DCLACSGC+TSAE V++ QS E L+ + NK
Sbjct: 61 TDCLACSGCVTSAEAVLVSLQSHQEVLTVLDSEDSCSVGSLNGSLQHVGAGEDATVPNKR 120
Query: 90 KAVII-SLSPQSRASLAEHFGISPLQVFKKLTTFL-------KSLGVKSIFDTSCSRDLT 141
K + + S+SPQ+RASLA G S ++ + L G + DT+
Sbjct: 121 KRIFVASVSPQTRASLAAAMGRSTNEIGHMIDRLLLESISSNGKRGFDYVLDTA-----P 175
Query: 142 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 201
+ C A+ ++ LP+L+S CPG++CY EK + +LP++S +KSPQ
Sbjct: 176 FLSVCLHLAAQELADSLANRSEKTPKLPILTSECPGFVCYLEKTHPA-VLPHLSRLKSPQ 234
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
+G +K + + +G D +YHV VMPC+DKKLEA+R + + T++D +I
Sbjct: 235 ALLGTLLKSLLPRYIGDDID-VYHVAVMPCFDKKLEASRAELT------DATWKDVDQDI 287
Query: 262 P---EVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKML-------------TNVDDEGH 304
+VD V+TT E+L L + V+F L L +KML N+ DE
Sbjct: 288 TPTRDVDCVITTRELLQLADFRDVDFSTLSPKALPNKMLPPIPALQTFLLGARNLKDEQS 347
Query: 305 LYGVAGSSGGYAETVFRH-AAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKT-LLKF 361
L G+SGGY ++ + +K K+IE K RNSD E + L +G+T +LK
Sbjct: 348 LGLQVGTSGGYLVSIMQELQSKHTGSKIIE-----KKGRNSDVMEFILLSADGETEILKM 402
Query: 362 ALCYGFQNLQNIVRKVKMRK-------------------------------CDYQFVEVM 390
A YGF+N+QN+VRK+K K +Y + EVM
Sbjct: 403 ARFYGFRNIQNLVRKLKPAKLRMLPGGAARKVVGKTARAPTARAGTSSSVGSEYCYAEVM 462
Query: 391 ACPSGCLNGGGQIK 404
ACP GC NGGGQ+K
Sbjct: 463 ACPGGCTNGGGQLK 476
>gi|365127355|ref|ZP_09339980.1| hydrogenase, Fe-only [Subdoligranulum sp. 4_3_54A2FAA]
gi|363624567|gb|EHL75636.1| hydrogenase, Fe-only [Subdoligranulum sp. 4_3_54A2FAA]
Length = 582
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 207/413 (50%), Gaps = 38/413 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CIT T + EK + + + + K V++ +P RA+L E FG+ P+
Sbjct: 191 CVSCGQCITVCPTGALTEKDDTAKVWTALRDPSKHVVVQPAPSVRATLGECFGM-PIGTN 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + D T++E EF+ R K + +LP+++S
Sbjct: 250 VEGKMVAALRRLGFDGVFDTDTAADFTIMEEATEFVQRVK---------NGGTLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E I P +SS KSPQQ GA K + +K+G P +I V+VMPC K
Sbjct: 301 SPGWVKFCETYYPDMI-PNLSSCKSPQQMFGALTKTYYAEKMGLDPHDIVCVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D D+ IP+VD +TT E+ +I+ + F L + D
Sbjct: 360 KFEIGRDDMSAAGDN-----------IPDVDISITTRELGRMIERAGIKFTELPDEDFDP 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L ++ G++GG E R A + + G+ +E +EF +R +D +E + +V
Sbjct: 409 ALGESTGAATIF---GATGGVMEAALRTAVELVTGETLE-KVEFHDVRGTDGIKEASYDV 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
G L + G N +++ V+ + Y F+E MACP GC+NGGGQ +P ++
Sbjct: 465 -GGLHLNVCVASGLTNCDAVLKAVQSGEKHYDFIEFMACPGGCVNGGGQPTQPASVRNFT 523
Query: 413 ELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+L K L L + + +NPL++ +Y E+L +PG KA +HT Y
Sbjct: 524 DL-KALRAAALYGEDDAKAIRKSHENPLLKKVYAEYLGEPGGHKAHHILHTSY 575
>gi|326201392|ref|ZP_08191264.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325988960|gb|EGD49784.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 583
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 209/411 (50%), Gaps = 36/411 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C C CI+ L EK ++ S + N+ V++ +P R +L E FG+ P+ +
Sbjct: 191 CTMCGQCISVCPVGALREKDDTEKVWSALANQELHVVVQTAPAVRVALGEEFGL-PIGTR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L +G +FDT + DLT++E E + R K + LP+++S
Sbjct: 250 VTGKMVAALNHMGFAKVFDTDTAADLTIMEEGTELLNRIK---------NGGKLPVITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E + L +SS KSP Q GA +K + +K+G +I+ V+VMPC K
Sbjct: 301 SPGWIKFCEHNYPEF-LENLSSCKSPHQMFGAVLKTYYAEKMGIDVKKIFVVSVMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + +P+VD V+TT E+ +I+ ++F LE+ D
Sbjct: 360 KFEAQRPEL-------------SATGLPDVDVVITTRELARMIKESGIDFNNLEDKDFDD 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ N G ++G ++GG E R ++ + GK + +E+ +R + + A
Sbjct: 407 PMGNATGAGVIFG---ATGGVMEAALRTVSEIVAGKSFD-DIEYAAVRGIEGIKEATVAI 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKE 413
G +K A+ G + + ++ +K + Y FVE+MACP GC+NGGGQ I+P +S +
Sbjct: 463 GDMKVKAAVANGLGSARKLLDSIKAGEASYDFVEIMACPGGCVNGGGQPIQPSSVRSWTD 522
Query: 414 L-IKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L + + IY E+ L +NP+++ +YD++ +PGS KA + +HT Y
Sbjct: 523 LRAERAKAIYEEDASLPIRKSHENPVIKEMYDKYFGKPGSHKAHEVLHTHY 573
>gi|302389352|ref|YP_003825173.1| hydrogenase, Fe-only [Thermosediminibacter oceani DSM 16646]
gi|302199980|gb|ADL07550.1| hydrogenase, Fe-only [Thermosediminibacter oceani DSM 16646]
Length = 426
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 211/426 (49%), Gaps = 35/426 (8%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVI--ISLSP 98
V S + P I + C+ C C+ + +S E + + ++I + +P
Sbjct: 23 VEACSGEPLIPHGIDERRCVNCGQCVVTCPAGAARDRSDLERVKEALEDDSIIKVVQSAP 82
Query: 99 QSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
R +L E FG+ P + ++ + + +G ++DT + DLT++E +EF+ R ++
Sbjct: 83 AMRVTLGEEFGMEPGTIVPGRMASAFRKMGFDRVYDTCFAADLTVMEEGHEFLERMEK-- 140
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
PM +S CP W+ + EK ++ ++SS KSPQQ GA +K ++ +K G
Sbjct: 141 -------GGPFPMFTSCCPAWVFFMEKNYPD-LVHHLSSCKSPQQMFGAVVKAYMAEKEG 192
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P I+ ++ MPC KK EAAR + RD VD+VLTT E+ LI
Sbjct: 193 IDPARIFMLSAMPCTAKKFEAARSEM------NSSGARD-------VDAVLTTRELAQLI 239
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ + + L E D G L+G +SGG E R AK L GK ++ +
Sbjct: 240 KDRQLELADLPEEDFDIPFGEYTGAGALFG---TSGGVMEAALRTVAKKLTGKPLK-SIA 295
Query: 338 FKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 396
F+ +R FRE +++ G +K A+ +G +N+ ++ +++ DY F+EVM CP GC
Sbjct: 296 FEPLRKGGAFREAVIDI-GNKKVKIAVVHGLKNIIPVLEEIRKGNSDYHFIEVMTCPDGC 354
Query: 397 LNGGGQIK-PKPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKA 453
+ GGGQ + PK K + K E +Y + L + NP +++LY E+L +P SEK+
Sbjct: 355 IGGGGQPRIPKRSLRQKTVRKRKEALYFYELGLPKIEAGDNPSIKALYAEFLGRPLSEKS 414
Query: 454 KKHVHT 459
+ +H
Sbjct: 415 HELLHV 420
>gi|256750971|ref|ZP_05491854.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus CCSD1]
gi|256750081|gb|EEU63102.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus CCSD1]
Length = 581
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 221/430 (51%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIVVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G +IFDT+ + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L ++G ++GG E R A + GK ++ +++ +R + R
Sbjct: 401 DEEYDEPLGMSTGAAVIFG---ATGGVMEAALRTVADIVEGKDLD-KFDYEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E + ++GK + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATIRIDGKDI-KVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ K E IY +N+ + KNP ++ LY+E+L P SEK+ +HT Y
Sbjct: 512 IHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
Query: 462 -----HPVVK 466
+P+VK
Sbjct: 572 SKKELYPLVK 581
>gi|325089799|gb|EGC43109.1| iron-sulfur cluster assembly protein [Ajellomyces capsulatus H88]
Length = 632
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 228/505 (45%), Gaps = 110/505 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDKPQVSTSSKQQAE---PVKISLK 57
S L DL+DFI+P C+ + +KA + D +V+ K + + V+ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIESLPRKADKNSKDVYEVAREDKIEPDNPPSVQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------------- 88
DCLACSGC+TSAE V++ QS E L+ ++
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLNTLDSCAELRIDELNGCSNAQRLRENDAGFSAEG 120
Query: 89 --------GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVK 129
GK + S+SPQ+RASLA +GIS + + FL G
Sbjct: 121 EQRTTESGGKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPEGLRAGGAYGNGFT 180
Query: 130 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYAEKQLGS 188
+ DT+ R + L + +E S+++ E P+LSSACPGWICYAEK
Sbjct: 181 WVVDTNVMRQVCLELSVSEVTESLNSSKDTLIETFPAPKRPVLSSACPGWICYAEK-THP 239
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 248
++LP+IS +KSPQ G +K + + L +I+H+ +MPC+DKKLEA+R++
Sbjct: 240 HVLPHISRLKSPQALTGTLLKTLLSKALNISSSQIWHLAIMPCFDKKLEASRQELTDASW 299
Query: 249 SQEETYRDEGLE-------IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301
+ +G + +VD V+T+ E+L L + ++ L PL +
Sbjct: 300 QDASSMTQKGHSPTESYSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSPSVPLFP 359
Query: 302 EGHLY-------------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
+ + AG+SGGY H T + ++ + RNSD E
Sbjct: 360 DPYFAPFLFPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGRNSDVIE 415
Query: 349 VAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------- 382
AL G T++K A YGF+N+QN+VRK+K +
Sbjct: 416 YALISPSGATIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCAATVSST 475
Query: 383 ---DYQFVEVMACPSGCLNGGGQIK 404
DY ++EVMACP GC NGGGQI+
Sbjct: 476 SATDYAYIEVMACPGGCTNGGGQIR 500
>gi|345017340|ref|YP_004819693.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032683|gb|AEM78409.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1]
Length = 581
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 222/430 (51%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIQVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G ++FDT + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q + +D VD+VLTT E+ +I+ ++F L+
Sbjct: 354 MPCTAKKLEIERPEM------QHKGIKD-------VDAVLTTRELARMIKEMGIDFVNLK 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A + GK ++ +++ +R + R
Sbjct: 401 DEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIVEGKDLD-KFDYEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E + ++G + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATIRIDGMDI-KVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ K E IY +N+ + KNP ++ LY+E+L P SEK+ +HT Y
Sbjct: 512 IHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
Query: 462 -----HPVVK 466
+P+VK
Sbjct: 572 SKKELYPLVK 581
>gi|46580181|ref|YP_010989.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough]
gi|387153384|ref|YP_005702320.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
gi|40828|emb|CAA40970.1| Hyd gamma [Desulfovibrio vulgaris str. Hildenborough]
gi|46449598|gb|AAS96248.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough]
gi|311233828|gb|ADP86682.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
gi|226889|prf||1610171A hydrogenase gamma
Length = 606
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 209/417 (50%), Gaps = 40/417 (9%)
Query: 55 SLKDCLACSGC-ITSAETVMLEKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISP 112
S DC+ C C + + + ++ + + + V + +P R L E FG+ P
Sbjct: 191 SASDCVGCGQCTLVCPVGALAGRDDVERVIDYLYDPEIVTVFQFAPAVRVGLGEEFGLPP 250
Query: 113 -LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
V ++ T L+ LG + DT+ + DL ++E E + R R + LP+
Sbjct: 251 GSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQRL---------RGGAKLPLF 301
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+S CPGW+ +AEK L ILP++S+ +SPQQ +GA K ++ + + P+ + V++MPC
Sbjct: 302 TSCCPGWVNFAEKHLPD-ILPHVSTTRSPQQCLGALAKTYLARTMNVAPERMRVVSLMPC 360
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EAAR +F R +G+ +VD+VLTT E L++ + ++ LE SP
Sbjct: 361 TAKKEEAARPEF-----------RRDGVR--DVDAVLTTREFARLLRREGIDLAGLEPSP 407
Query: 292 LDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFR 347
D L G G A G++GG E R L GK + +E +R + R
Sbjct: 408 CDDPLM-----GRATGAAVIFGTTGGVMEAALRTVYHVLNGKEL-APVELHALRGYENVR 461
Query: 348 EVALEV-EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
E + + EG +K A+ +G + + +V V K D+ FVEVMACP GC++GGGQ + K
Sbjct: 462 EAVVPLGEGNGSVKVAVVHGLKAARQMVEAVLAGKADHVFVEVMACPGGCMDGGGQPRSK 521
Query: 407 PGQSPKELIK--TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P + L ++ EN L NPL+ +Y+ +L +P S + + +HT Y
Sbjct: 522 RAYNPNAQARRAALFSLDAENA-LRQSHNNPLIGKVYESFLGEPCSNLSHRLLHTRY 577
>gi|160881923|ref|YP_001560891.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
gi|160430589|gb|ABX44152.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
Length = 582
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 200/414 (48%), Gaps = 41/414 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T + EK S+D L I + K V + +P RA L E FG+ P+
Sbjct: 192 CVSCGQCIAVCPTGALYEKDSIDAVLEAIADPEKFVFVQTAPAVRAGLGEAFGL-PIGTN 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G +FDT+ S DLT++E EF+ R + + LP+++S
Sbjct: 251 VEGKMVAALRRIGFDKVFDTNFSADLTIMEEATEFLDRVQ---------NGGVLPLITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GA K + +KLG P ++ V++MPC K
Sbjct: 302 SPGWIKYCEHYFPD-MTENLSSCKSPQQMFGAIAKTYYAEKLGIDPAKMVSVSIMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R+D +P+VD LT E LI + F +L + D
Sbjct: 361 KFELGRDD-------------QSAAGVPDVDYSLTVREFARLIDKVGLKFLSLPDEQYDN 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L ++G ++GG E R A L G+ + +EF +R +E +V
Sbjct: 408 PLGISTGAAVIFG---ATGGVMEAALRTAVWKLTGENSDSPIEFNEVRGVQGIKEATFQV 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + A+ G N + ++ KVK + +Y F+E+M CP GC+NGGGQ P+ S +
Sbjct: 465 AGMDV-NVAVASGLSNARELLEKVKSGEANYHFIEIMGCPGGCVNGGGQ--PQVPASVRN 521
Query: 414 L--IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+ L L + A+P + N V+ +YDE+L PGS KA +HT Y
Sbjct: 522 FTDIRALRAKVLYDSDAANPLRMSHENEAVKMVYDEFLGAPGSHKAHDILHTTY 575
>gi|325845872|ref|ZP_08169070.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481778|gb|EGC84810.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 577
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 219/408 (53%), Gaps = 35/408 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-VF 116
C C C++ T + EK ++ E + K +I+ ++P R +L E FG P + V
Sbjct: 194 CTFCGQCLSVCPTGALTEKSNIKEIWKLLESDKHLIVQVAPAVRVALGEMFGRKPGESVE 253
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
++ T L++LG +FDT+ + DLT++E NEF+ R LP+L+S CP
Sbjct: 254 GEMVTALRNLGFDKVFDTNFAADLTIMEEANEFVQRLN---------GKGKLPILTSCCP 304
Query: 177 GWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
GW+ + E+Q I +P SS KSP + GA K + +K+G +P++I V++MPC KK
Sbjct: 305 GWVNFMEQQFSDLIDIP--SSCKSPHEMFGAIAKTYYAEKIGKKPEDIKVVSIMPCISKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R++ + E Y D VD VLTT E+ +I+ ++F LE+S D
Sbjct: 363 YEAKRDEL------ENEGYSD-------VDIVLTTRELGAMIKEAGIDFNKLEKSDFDNP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
+ G ++ G+SGG E R A T+ G+ +E +EF+ +R ++ +++
Sbjct: 410 MGESTGAGDIF---GTSGGVIEATIRTAYDTITGEELE-KVEFEDLRGLKGIKQAKVDIN 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP-KE 413
G+ +K A+ G N + ++ K++ ++ D +EVMACP GC+ GGGQ S KE
Sbjct: 466 GRE-IKIAVANGLGNTRKLLEKLRNKEIDLDAIEVMACPGGCIGGGGQPYHNGKISILKE 524
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L I +N L ++NP ++ LY E+L + GSEKAK+ +HT Y
Sbjct: 525 RSKGLYQID-KNKKLRKSYQNPYIKKLYQEYLGEVGSEKAKELLHTSY 571
>gi|392940524|ref|ZP_10306168.1| hydrogenase, Fe-only [Thermoanaerobacter siderophilus SR4]
gi|392292274|gb|EIW00718.1| hydrogenase, Fe-only [Thermoanaerobacter siderophilus SR4]
Length = 581
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 221/430 (51%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIQVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G ++FDT + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L+
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLK 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A + GK ++ +++ +R + R
Sbjct: 401 DEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIVEGKDLD-KFDYEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E + ++G + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATIRIDGMDI-KVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ K E IY +N+ + KNP ++ LY+E+L P SEK+ +HT Y
Sbjct: 512 IHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
Query: 462 -----HPVVK 466
+P+VK
Sbjct: 572 SKKELYPLVK 581
>gi|167040761|ref|YP_001663746.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514]
gi|300914799|ref|ZP_07132115.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561]
gi|307723967|ref|YP_003903718.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513]
gi|166855001|gb|ABY93410.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514]
gi|300889734|gb|EFK84880.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561]
gi|307581028|gb|ADN54427.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513]
Length = 581
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 141/433 (32%), Positives = 222/433 (51%), Gaps = 57/433 (13%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G +IFDT+ + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 345
+ D+ L G G A G++GG E R A + GK ++ +++ +R +
Sbjct: 401 DEEYDEPL------GMSTGAAVIFGATGGVMEAALRTVADIVEGKDLD-KFDYEEVRGLE 453
Query: 346 -FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
RE + ++GK + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ
Sbjct: 454 GVREATIRIDGKDI-KVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ-- 510
Query: 405 PKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
P +P E+ K E IY +N+ + KNP ++ LY+E+L P SEK+ +H
Sbjct: 511 --PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLH 568
Query: 459 TEY-----HPVVK 466
T Y +P+VK
Sbjct: 569 THYSKKELYPLVK 581
>gi|167037864|ref|YP_001665442.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116281|ref|YP_004186440.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856698|gb|ABY95106.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929372|gb|ADV80057.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 581
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 141/433 (32%), Positives = 221/433 (51%), Gaps = 57/433 (13%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ LK +G ++FDT + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 345
+ D+ L G G A G++GG E R A + GK ++ +++ +R +
Sbjct: 401 DEEYDEPL------GMSTGAAVIFGATGGVMEAALRTVADIVEGKDLD-KFDYEEVRGLE 453
Query: 346 -FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
RE + ++GK + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ
Sbjct: 454 GVREATIRIDGKDI-KVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ-- 510
Query: 405 PKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
P +P E+ K E IY +N+ + KNP ++ LY+E+L P SEK+ +H
Sbjct: 511 --PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLH 568
Query: 459 TEY-----HPVVK 466
T Y +P+VK
Sbjct: 569 THYSKKELYPLVK 581
>gi|373486849|ref|ZP_09577520.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
gi|372010802|gb|EHP11405.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
Length = 588
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 208/428 (48%), Gaps = 45/428 (10%)
Query: 51 PVKISLKD---CLACSGCITSAETVMLEKQSLDE----FLSNINKGKAVIISLSPQSRAS 103
P +S D C+ C C+ T +Q E LS K V++ ++P RA+
Sbjct: 182 PANLSNMDDSVCIQCGQCVAVCPTAAFLEQDHTERVWQALSMPRDVKHVVVQVAPAIRAT 241
Query: 104 LAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
L E F + P+ V KL T L+ LG ++FDT+ DLT++E EF+ R + +
Sbjct: 242 LGETFDL-PMGTPVTGKLITALRRLGFDTVFDTNFGADLTIVEEATEFLNRVTKGE---- 296
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
+LP+L+S PGW+ + EK ++ Y S+ KSP Q IK + +K G P
Sbjct: 297 -----NLPLLTSCSPGWVSFLEK-FYPEMIRYTSTCKSPMQMTSTLIKSYYAEKKGMDPR 350
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
+IY V +MPC KK EAAR + + P D+VLTT E+ +I+
Sbjct: 351 DIYVVAIMPCVAKKFEAARPEHSLPDGT------------PYTDAVLTTRELAWMIKSYG 398
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
++F AL + D+ L ++G ++GG E R AA L G+ + G L F+ I
Sbjct: 399 IDFNALPDGEFDRPLGISSGAADIFG---ATGGVMEAALRTAAVKLTGEEL-GPLVFEEI 454
Query: 342 RN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
R + +E L V G ++ A+ G N ++++ +K + +Y VE+MACP GC+ GG
Sbjct: 455 RGVTGIKEATLRV-GDKDIRIAVSNGLNNAKHVLDAIKSGEKEYHLVEIMACPGGCIMGG 513
Query: 401 GQIKPKPGQSP------KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GQ P+ P + K L I + L +NP + LY E+L +P SE A
Sbjct: 514 GQPYPRADHDPLDPETARTRAKALYGIDAQK-QLRRSHENPAIEHLYAEFLGEPSSELAH 572
Query: 455 KHVHTEYH 462
K +HT Y
Sbjct: 573 KLLHTHYQ 580
>gi|366162677|ref|ZP_09462432.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
Length = 1145
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 235/471 (49%), Gaps = 43/471 (9%)
Query: 7 PTLRIGDLSDFIAPSQNCVVSLKK-----ATFKNPDKPQVSTSSKQQAEPVKISL----K 57
P + I D FI N +S + + + PD + +Q K L
Sbjct: 610 PYIPIVDDHPFIIRDHNKCISCGRCIAACSEIEGPDILTFYMKNGRQLVGTKSGLPLQQT 669
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQV 115
DC++C C+T+ L+ ++ + + IN K +++ ++P R+ +++ + + +
Sbjct: 670 DCVSCGQCVTACPCGALDYRRDKGKVMRAINDHKKTVVAFVAPAVRSLISKTYNVPFEEA 729
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ LK LG +FD + + DLT++E EF+ R + +P +S C
Sbjct: 730 SPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEFLTRVS---------NKGVMPQFTSCC 780
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + EK+ I+P++SS KSPQ +GAT+K+H + G +++ V+++PC KK
Sbjct: 781 PGWVNFVEKRYPE-IIPHLSSCKSPQMMMGATVKNHYAKLAGLDKKDLFVVSIVPCLAKK 839
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F E RD VD+VLTT E++++++L+ ++ + D+
Sbjct: 840 HEAARPEFA------PEGIRD-------VDAVLTTTEMIEMVKLENIDISEVVPQEFDEP 886
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
V G L+ G+SGG AE R A + L GKV+ HL+F+ IR D +E ++V+
Sbjct: 887 YRQVSGAGILF---GASGGVAEAALRMAVEKLTGKVLTDHLDFEEIRGFDGVKEATVDVD 943
Query: 355 GKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
T ++ A+ G N + IV K ++ Y +EVMACP GC+ G G P+ + ++
Sbjct: 944 -STKVRVAVVSGLHNAEPIVEKIIQGIDVGYDLIEVMACPGGCICGAGHPVPEKIDAAEK 1002
Query: 414 LIKTLETIYLENV-MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L + ++ V +NP + LYDE+ + S A + +HT Y P
Sbjct: 1003 RQQIL--VNIDKVSKYRKSQENPDILRLYDEFYGEANSHLAHELLHTHYSP 1051
>gi|326391445|ref|ZP_08212981.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200]
gi|325992524|gb|EGD50980.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200]
Length = 581
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 221/430 (51%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIQVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ L+ +G ++FDT + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L+
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLK 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A + GK ++ +++ +R + R
Sbjct: 401 DEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIVEGKDLD-KFDYEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E + ++G + K A+ G N + ++ KVK + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATIRIDGMDV-KVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ K E IY +N+ + KNP ++ LY+E+L P SEK+ +HT Y
Sbjct: 512 IHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
Query: 462 -----HPVVK 466
+P+VK
Sbjct: 572 SKKELYPLVK 581
>gi|145538267|ref|XP_001454839.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422616|emb|CAK87442.1| unnamed protein product [Paramecium tetraurelia]
Length = 1021
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 202/377 (53%), Gaps = 61/377 (16%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
K+SL+DCLACSGC+T+AET++++ QSLDEFL I K + I +SPQSRASL+ +
Sbjct: 668 KVSLQDCLACSGCVTTAETILIQTQSLDEFLQAIKKHQNPAIGISPQSRASLSHVLNFTD 727
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
++ L + L VK ++D S + + N I +KQ++ + P+L
Sbjct: 728 SEMHSILHQLFQELNVK-LYDMSEYMKIAI----NNSIQEFKQTKIT---------PLLC 773
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGW+CYAEK L I+ ++S VKSPQQ GA +K + Y T+MPCY
Sbjct: 774 SECPGWVCYAEKTLDESIINHMSKVKSPQQIFGAILK----------KNHDYIATIMPCY 823
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE----VLDLIQLKAVNFEALE 288
DKKLEA R L++ E +++ VL+T E + D IQ + +
Sbjct: 824 DKKLEAVR------LENNE-----------DINIVLSTREIEQYIKDYIQKSQI---TPQ 863
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
++ L M N + ++ SS Y + + + + K + ++ ++ +N DF E
Sbjct: 864 QTQLSTMAINFQEYHNI-----SSNNYLDYIIQSSVKPNW--TVKQNIR----KNKDFIE 912
Query: 349 VALEVEGKTLLK-FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK-PK 406
+ + E L +A +G +N+ N++ ++K + C Y++VE+MACP GCLNGGGQI K
Sbjct: 913 ITIYNEDMQLQGIYARVFGLKNIANLISQIKTKTCKYKYVEIMACPLGCLNGGGQILIQK 972
Query: 407 PGQSPKELIKTLETIYL 423
+ +LI L+ I +
Sbjct: 973 NTEKANDLIPKLKDIMI 989
>gi|376260107|ref|YP_005146827.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
gi|373944101|gb|AEY65022.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
Length = 574
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 208/418 (49%), Gaps = 41/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
++ ++C+ C CI L+++ E + N V++ +P R +L E FG +
Sbjct: 185 LASQECINCGQCIKICPVGALQERDDTEKVWKALENPELHVVVQTAPAVRVALGEEFGFA 244
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ T L+ LG +FDT+ S DLT+IE NE I R K + LP+
Sbjct: 245 PGTNVEGKMVTALRRLGFNKVFDTNFSADLTIIEEGNELIDRIK---------NGGKLPL 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S PGWI Y E +I +SS KSPQQ GA K + K P ++ V+VMP
Sbjct: 296 ITSCSPGWIKYCEHNYHDFI-ENLSSCKSPQQMFGAIAKSYYPVKADVDPKSVFVVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+ +GL+ ++D+V+TT E+ +I+ + F LE S
Sbjct: 355 CTAKKYEADREEMSV-----------DGLK--DIDAVITTRELAKMIRQAGIKFAELENS 401
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D +L G ++G ++GG E R A L GK ++ +E+ +R D +E
Sbjct: 402 KQDSILGTYSGAGTIFG---NTGGVMEAALRTVADKLTGKSLD-CIEYTAVRGLDGIKEA 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKP 407
+ + +K A+ G N ++ K++ + +Y F+EVM C GC+NGGGQ IK K
Sbjct: 458 TVNI-ADMEIKVAVANGTGNASKLLDKIRAGEANYHFIEVMGCEGGCINGGGQPIIKDK- 515
Query: 408 GQSPKELIKTLETIYLENVMLA----DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
S + +KT L ++ + +NP ++ LY E+L + G KA K +HT Y
Sbjct: 516 --STTDAVKTARIKGLYDIDASCEKRKSHENPEIQKLYSEYLGEAGGHKAHKLLHTHY 571
>gi|212696951|ref|ZP_03305079.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM
7454]
gi|212676039|gb|EEB35646.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM
7454]
Length = 577
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 219/408 (53%), Gaps = 35/408 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-VF 116
C C C++ T + EK ++ E + K +I+ ++P R +L E FG P + V
Sbjct: 194 CTFCGQCLSVCPTGALTEKSNIKEVWKLLESDKHLIVQVAPAVRVALGEMFGRKPGESVE 253
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
++ T LK+LG +FDT+ + DLT++E NEF+ R + LP+L+S CP
Sbjct: 254 GEMVTALKNLGFDKVFDTNFAADLTIMEEANEFVKRLE---------GKGKLPILTSCCP 304
Query: 177 GWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
GW+ + E+Q I +P SS KSP + GA K + +K+G +P++I V+VMPC KK
Sbjct: 305 GWVNFMEQQFSDLIDIP--SSCKSPHEMFGAIAKTYYAEKIGKKPEDIKVVSVMPCISKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R++ + E Y D VD VLTT E+ +I+ ++F LE+S D
Sbjct: 363 YEAKRDEL------ENEGYSD-------VDIVLTTRELGAMIKEAGIDFNKLEKSDFDNP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
+ G ++ G+SGG E R A T+ G+ +E +EF+ +R ++ +++
Sbjct: 410 MGESTGAGDIF---GTSGGVIEATIRTAYDTITGEELE-KVEFEDLRGLKGIKQAKVDIN 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP-KE 413
G+ +K A+ G N + ++ K++ + + +EVMACP GC+ GGGQ S KE
Sbjct: 466 GRE-IKIAVANGLGNTRKLLEKLRNEEIELDAIEVMACPGGCIGGGGQPYHNGKISILKE 524
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L I EN L ++NP ++ LY E+L + G+EKAK+ +HT Y
Sbjct: 525 RSKGLYQID-ENKKLRKSYQNPYIKKLYQEYLGEVGNEKAKELLHTSY 571
>gi|187779552|ref|ZP_02996025.1| hypothetical protein CLOSPO_03148 [Clostridium sporogenes ATCC
15579]
gi|187773177|gb|EDU36979.1| hydrogenase, Fe-only [Clostridium sporogenes ATCC 15579]
Length = 577
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 208/416 (50%), Gaps = 46/416 (11%)
Query: 58 DCLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
+C C C+ T A T + + + LS K K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTFCGQCVSVCPTGALTEVNNTSKVWDALSQ--KDKVVIVQTAPAIRAALGEEFGLEPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT + DLT++E +EFI R + +LPML+
Sbjct: 253 TTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEASEFIHRLEHG---------GTLPMLT 303
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGWI + E ++ SS KSPQQ GA K ++ +K+ P +I V+VMPC
Sbjct: 304 SCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGAIAKSYLAEKMKVDPKDIIVVSVMPCL 362
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA RE+ + G IP+VD V++T E+ +I ++F +L+E
Sbjct: 363 AKKYEAKREEM-----------KRNG--IPDVDIVISTRELAKMIVEAGIDFNSLQEEEF 409
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD-FRE 348
D L ++ G++GG E R T + V +G L EF +R + RE
Sbjct: 410 DNPLGESTGASVIF---GTTGGVMEAALR----TAYEWVTKGTLKDVEFIEVRGEEGIRE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ +K A+ G N + ++ ++ K Y +E+MACPSGC++GGGQ P
Sbjct: 463 ATVNIK-DIEVKVAIASGLGNARKLLNDIRNGKSKYHMIEIMACPSGCVDGGGQ--PYIY 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L K E +Y E N + +N ++ LY+E+L +P EKA + +HT+Y
Sbjct: 520 GDTNILKKRTEALYKEDSNKEIRKSHENLYIKKLYEEYLGKPYGEKAHELLHTKYR 575
>gi|223558018|gb|ACM91024.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
Length = 590
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 203/411 (49%), Gaps = 31/411 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C+ C C+ T + E + + L +I N + ++P R +L E FG+ +
Sbjct: 194 NCVLCGQCVAVCPTGALAEVDNTGKILRDIANPNVKTCVQVAPAVRVALGEEFGMPAGSI 253
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ LK++G +FDT S DLT++E E I R K D N +P+++S
Sbjct: 254 VTGKIAAALKAIGFDYVFDTDWSADLTIMEEGTEVIGRLKAYLAGD---KNVKIPVMTSC 310
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + EK + Y S+ KSPQ GAT+K + K+G + V+VMPC K
Sbjct: 311 CPAWVNFYEK-FYPELRDYPSTAKSPQGMFGATVKTYFADKIGIPRKNLVCVSVMPCVAK 369
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+ D P+V+ +TT E+ LI++ ++F +L ++ D
Sbjct: 370 KYECEREELGVNGD-------------PDVNYSITTRELARLIKICNIDFNSLPDAEFDS 416
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L ++G ++GG E R A + L G+ + ++F+ +R D RE + V
Sbjct: 417 PLGESTGAAVIFG---ATGGVMEAALRTAVEVLTGETLP-RIDFEEVRGLDGVREATIPV 472
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK A+ YG +N + I+ ++K +C Y FVEVMACP GC++G GQ S
Sbjct: 473 PGVADLKVAVVYGLKNARMIMEQIKAGECPYHFVEVMACPGGCIDGAGQPYHHGDAS--- 529
Query: 414 LIKTLETIYLE---NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+I+ E + L +NP V+++Y E+ +P SEK+ +HT Y
Sbjct: 530 IIRARHAAIYEADRRMPLRKSHENPEVQAIYKEFYGEPCSEKSHHLLHTIY 580
>gi|149246746|ref|XP_001527798.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|259511268|sp|A5DSI2.1|NAR1_LODEL RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|146447752|gb|EDK42140.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 594
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 157/514 (30%), Positives = 226/514 (43%), Gaps = 137/514 (26%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSKQQAE------------ 50
S L DL+DFI+P C+ V+ K+ NP S++ + E
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVTQPKSEL-NPQHVDSSSTISETGEVEIQIDSQGNPL 59
Query: 51 --------------------PVKISLKDCLACSGCITSAETVMLEKQSLDEFL-----SN 85
P +ISL DCLACSGCITSAE V++ + S E L S+
Sbjct: 60 EISQIDTKINKADPSSTALTPAQISLADCLACSGCITSAEEVLVAQHSHHELLKAMEESS 119
Query: 86 INKG--KAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTL 142
+ G K + S+S Q RASLA + +S ++ K L F+ +G + + TS R L+L
Sbjct: 120 LASGTEKVFVASISQQLRASLAMAYDMSIEEMDKLLINLFVNQMGFQYVVGTSLGRKLSL 179
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
I I R ++ + + N P+LSS CPGW+ YAEK Y+LPYIS+VKS QQ
Sbjct: 180 INESQGMIHRKEEGKTIGENLKN---PVLSSICPGWVLYAEKT-HPYVLPYISTVKSAQQ 235
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 262
G +K+ + G ++YH+T+MPC+DKKLE+AR + D + +P
Sbjct: 236 ITGCLLKNLTAYERGIGKSKVYHLTIMPCFDKKLESARPELFANHDGAD--------NVP 287
Query: 263 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG------------ 310
+VD VLT E++ LI ++ + + +L D +Y A
Sbjct: 288 DVDCVLTARELVTLIDESLGKYQLVPKVIPQTLLRK--DIAEVYKSAAPTNWPFVQYSWS 345
Query: 311 -----SSGGYAETVFRHAAKTLFG-----------KVIEGHLEFKTIRNSDFREVALEVE 354
SSGGYA T R + L KV++G +N+D E+ L
Sbjct: 346 NDPGSSSGGYAYTYLRLFQEQLITTQNYRPEDFSMKVLQG-------KNTDVYEMRLLHN 398
Query: 355 GKTLLKFALCYGFQNLQNIVRKVK-------------------------MRK-------- 381
G + A+ GF+N+QN+VRK+K M K
Sbjct: 399 GNQVASSAIVNGFRNIQNLVRKLKPGNNNNKVGGLAIKVNPLVARRRARMSKSEDSSGAS 458
Query: 382 ------------CDYQFVEVMACPSGCLNGGGQI 403
+VE+MACP GC+NGGGQI
Sbjct: 459 ASSMAPAEIADPSKVDYVEIMACPQGCINGGGQI 492
>gi|150021476|ref|YP_001306830.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
gi|149793997|gb|ABR31445.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
Length = 582
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 213/410 (51%), Gaps = 32/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQV 115
+C++C C + E + L + + + ++++ +P R +L E FG+ P V
Sbjct: 187 ECISCGQCAYLCPVGAIYETPDWKKVLKLLERKEKILVAQTAPSVRVALGEEFGMEPGSV 246
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ LK LG +FDT+ + DLT++E E + R+K+ PM +S
Sbjct: 247 STGKMVASLKKLGFDYVFDTNFAADLTIVEEGTELVERFKE---------GGPFPMFTSC 297
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGWI EK +I P +SS KSPQQ + + +K + +K+G P++I V+VMPC K
Sbjct: 298 CPGWINLLEKIYPEFI-PNVSSAKSPQQMMSSVVKTYFAKKIGVDPEDIIMVSVMPCTAK 356
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R Q++ ++G EI D V+TT E+ LI+LK +NF L+++ D
Sbjct: 357 KDEIKR--------PQQKIKLEDGREIQTTDYVITTRELAKLIKLKEINFAGLQDAEFDN 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L ++GV +GG E R A + + K + LEF +R D RE +++
Sbjct: 409 PLGTSTGAAAIFGV---TGGVMEAALRTAYEVITNKELP-KLEFTAVRGLDGIREAEIDI 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
EGK +K A+ +G N++ ++ ++ K Y F+E+MACP GC+ GGGQ K P
Sbjct: 465 EGKK-VKVAIAHGTANVRKLLDDIRDGKRYYDFIEIMACPGGCIGGGGQPK---SLDPDI 520
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K IY E L +NP ++ LY+E+LE+P S A + +HT Y
Sbjct: 521 LKKRAMAIYSIDELSTLRKSHENPDIQKLYEEFLEKPNSHIAHELLHTYY 570
>gi|85000289|ref|XP_954863.1| nuclear-architecture-related protein (NARF) or Fe-hydrogenase
[Theileria annulata strain Ankara]
gi|65303009|emb|CAI75387.1| nuclear-architecture-related protein (NARF) or Fe-hydrogenase,
putative [Theileria annulata]
Length = 666
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 149/568 (26%), Positives = 241/568 (42%), Gaps = 172/568 (30%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSL----KKATFKNPDK---------------------- 38
+S ++I L+D++ P + CV+ L KK K DK
Sbjct: 2 YSNAVKISGLNDYLNPGEECVLPLLKSDKKYEIKLNDKILDSETPNKGYLGEDLLNNDIY 61
Query: 39 --PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISL 96
+++ ++ + + + + L DCL+CSGC+TS+E ++L+ ++ + L + +IS+
Sbjct: 62 KNNKLNVTTVDKNKRITVGLSDCLSCSGCLTSSEEILLKDENHFKVLEKMKTSDFCVISI 121
Query: 97 SPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY--- 153
SPQ+ L+ H+ + + F+KL + LG K +FD + L+L ++ +EFI +Y
Sbjct: 122 SPQTIFMLSSHYNMKAEKAFRKLCYLFRFLGAKLVFDIGLAELLSLTQSKDEFIDKYYNN 181
Query: 154 ----------------------KQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 191
K + +LP+++S CPGW YAEK L ++
Sbjct: 182 NTVSSTSSSDLGVSNKIVNGINKDLNGENTRERRLNLPIITSHCPGWTLYAEKTLDQELV 241
Query: 192 PYISSVKSPQQTIGATIK------------HHICQ------------------------- 214
IS V S Q G +K +HI
Sbjct: 242 DLISKVPSSQVIQGLLVKILSHTINYYKTIYHINYLKLFISYSFLNSFLTDAKNYNTDGQ 301
Query: 215 -------KLGFRPDEIYHVTVMPCYDKKLEAAREDF---------VFQLDSQEETYRD-- 256
KL +IYH++++PCYDKK E R +F ++Q DS T D
Sbjct: 302 NNIINNFKLTNTNTKIYHISIVPCYDKKFETIRTEFQLNFNSLFSLYQPDSNPTTSSDPD 361
Query: 257 --EGLEI-PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT---------------- 297
+ LE P VD +L+T ++ ++ + F L+E P D ++
Sbjct: 362 DSQALEKEPLVDDILSTSDIESILSSLGLKFTQLKEEPPDHLVNFLYFFNKFNSISSLNI 421
Query: 298 ---------NVDDEGHL------YGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTI 341
+ D HL G+ SGG+AE +F+H+ K LF ++ +L+F
Sbjct: 422 KHNLNLPTYDSKDYNHLKRLIRCSGLYAQSGGFAEEIFKHSCKQLFNMDLDNSNLKFTET 481
Query: 342 RNSDFRE-VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK------------------- 381
N+DF+E V L+ LL+F + YGF+N+QNI++ +K K
Sbjct: 482 INNDFKECVLLDENNDVLLRFIIAYGFRNIQNIIKLLKSHKSTLDSSGNYYQKQPDGLGN 541
Query: 382 -------CDYQFVEVMACPSGCLNGGGQ 402
CDY VE+MACP GC NG GQ
Sbjct: 542 RNGKDFVCDY--VELMACPGGCFNGAGQ 567
>gi|333897409|ref|YP_004471283.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112674|gb|AEF17611.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11]
Length = 581
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 215/411 (52%), Gaps = 38/411 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C++C CI + + ++ + + + +++ K V+ +P R +L E FG+ +
Sbjct: 191 CISCGQCIEACPVGAIYEKDHTKMVYDALLDEKKYVVAQTAPAVRVALGEEFGMPYGSIV 250
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ + LK LG +FDT + DLT+IE NE + R + LPM++S
Sbjct: 251 TGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRLNEG---------GKLPMITSCS 301
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E+ +I +S+ KSP +GA IK + +K G P +I+ V++MPC KK
Sbjct: 302 PGWINYCERYYPEFI-DNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKK 360
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + +G++ +VD+VLTT E+ +I+ ++F +L +S D
Sbjct: 361 GEIDRPQMIV-----------DGMK--DVDAVLTTRELARMIKQSGIDFVSLPDSEYDNP 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++G ++GG E R A + G+ IE + E++ +R + +E +++
Sbjct: 408 LGESSGAAVIFG---ATGGVMEAALRTVADIVEGRDIE-NFEYEEVRGLEGIKEAKIDIG 463
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
GK + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P + K+L
Sbjct: 464 GKEI-KIAVANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNE--KDL 520
Query: 415 IK--TLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L+ IY +++ + KNP++ LY+E+L P EK+ +HT Y
Sbjct: 521 VRESRLKAIYEADKDLPIRKSHKNPMITKLYEEFLTSPLGEKSHHLLHTTY 571
>gi|303257906|ref|ZP_07343915.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47]
gi|331000429|ref|ZP_08324104.1| putative ferredoxin hydrogenase HydA1 [Parasutterella
excrementihominis YIT 11859]
gi|302859249|gb|EFL82331.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47]
gi|329571761|gb|EGG53441.1| putative ferredoxin hydrogenase HydA1 [Parasutterella
excrementihominis YIT 11859]
Length = 597
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 206/434 (47%), Gaps = 53/434 (12%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--------IISLSPQSRASLAEHFG- 109
C+ C CI T L S D N++K + + ++ +P RA+L + FG
Sbjct: 194 CVRCGQCIMVCPTGAL--MSTD----NVDKAREILEDESVISVVQFAPSVRATLGDAFGT 247
Query: 110 ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+S V K++ LK +G + DT+ S D+ ++E E + R K S +P
Sbjct: 248 LSGTNVEKRIIAGLKMMGANYVLDTNFSADVVIMEEGTELLNRIKDKH--------SVMP 299
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + E Q +L ++S+ +SPQ + + K + +K+G P +I +++M
Sbjct: 300 MFTSCCPGWVSFVE-QHRPEMLDHLSTTRSPQAVLSSLAKTWLPEKIGAEPSKIRVISIM 358
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK+EA R +G +P+ D VLT E+ L + + ++ + +E+
Sbjct: 359 PCTAKKIEAGRPQLA-----------KDG--VPDTDLVLTVRELARLFKSRGIDLKEIED 405
Query: 290 SPLDKMLTNVDDEGHLYGVA-GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
D T G GV G SGG AE R L GK + ++ FK + +
Sbjct: 406 GEFD---TPFMSRGSGAGVIFGKSGGVAEAASRTLYHVLTGKEVN-NVPFKPSNHPHVYK 461
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
A EG LK A+ YG N I +V CDY F+EVM CP GC+NGGG I+ + G
Sbjct: 462 EADMDEGGVKLKIAVVYGLANANKICDEVAAGTCDYNFIEVMTCPGGCVNGGGTIRFR-G 520
Query: 409 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH---- 462
K E + EN + NP+V+ LYDE+L +P S KA + +HT Y
Sbjct: 521 NYLNATSKRFEVLERADENSPVRQSHNNPMVKELYDEFLGEPNSHKAHQLLHTSYDDRSK 580
Query: 463 -PVVKSITAQLHNW 475
P V SI H W
Sbjct: 581 TPAVPSIR---HVW 591
>gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
Length = 688
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 203/416 (48%), Gaps = 47/416 (11%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
+C+ C C + T L +S E + N+ N V+ ++P R L E FG +P
Sbjct: 192 ECVNCGQCSSVCPTGALTPKSEIEDVWNLLANPEVTVVAQIAPAVRVGLGECFGAAPGDP 251
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ +L +K++G ++DT+ + DLT+IE EF+AR + + LP +S
Sbjct: 252 IMGRLVAAMKTIGFDQVYDTTFAADLTVIEEAEEFLAR---------KAAGEKLPQFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ +AE Q +LP +SS +SPQQ G+ +K + ++LG ++ V+VMPC K
Sbjct: 303 CPGWVQFAE-QYYPELLPNLSSCRSPQQMFGSLVKEMLPEQLGIPRKKLAIVSVMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R +F +D P+VD+VLTT E+ +I+ + F LE D
Sbjct: 362 KFEARRPEFA----------KDGS---PDVDNVLTTQEMARMIEQAGLRFNDLEPQSRDM 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
G ++G ++GG E V R+AA+ + G+ + +F +R S REV +EV
Sbjct: 409 PYGFGTGAGVIFG---TTGGVTEAVLRYAAEKVTGQTLY-DTDFNDVRGESGLREVNVEV 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G TL A+ YG N + + K+K CDY +EVMACP GC+ G GQ P
Sbjct: 465 GGNTL-HLAVVYGLANARVVCEKIKAGTCDYDLIEVMACPGGCVGGAGQ--------PVN 515
Query: 414 LIKTLETIYLENVMLADPFK-------NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
L + + +D + N V Y ++L G KA + +HT Y
Sbjct: 516 LDLAARKRRAQGLYRSDKGRQLHKAQDNVFVNQCYAKFLGDVGGHKAHELLHTGYQ 571
>gi|156082966|ref|XP_001608967.1| nuclear prelamin A recognition factor-like [Babesia bovis T2Bo]
gi|154796217|gb|EDO05399.1| nuclear prelamin A recognition factor-like, putative [Babesia
bovis]
Length = 583
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/501 (26%), Positives = 229/501 (45%), Gaps = 101/501 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKA--TFKNPDKPQVSTSSK-------QQAEPVKIS 55
FS ++I L+D+++ S+ CV+ + K ++ K +++ SK Q+++ + +
Sbjct: 2 FSTAVKIDQLNDYLSLSEECVLPVGKQGEKYEVKIKSKITDVSKKNAIDDKQESKRILVG 61
Query: 56 LKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV 115
L DC++CSGC+TS+E ++L + ++ I + ++S++PQ+ A + +S
Sbjct: 62 LSDCMSCSGCLTSSEDIILRDRGYEDIAKKIGTAEFAVVSIAPQTAFMFAAAYKVSHQTA 121
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF---IARYKQSQESDDERSNS------ 166
+++L+ L++LG K ++D S + + E EF + + + + +N+
Sbjct: 122 YRRLSYLLRTLGAKKVYDMQISEQICIEETKREFKRGLEKLLNRTDIPESSTNTPNCVDH 181
Query: 167 ----SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF---- 218
+LP++++ CPGW YAEK L + I IS V S QQ GA IK + ++ F
Sbjct: 182 ELLPNLPIIAAHCPGWTTYAEKSLDASITSNISKVASSQQIQGALIKTVLWLQIAFGKVR 241
Query: 219 -----------------------------RPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 249
+ IYHVT PCYDKK+EA + L
Sbjct: 242 GYLGTSWSGAFYRTIDDILRLWGDGTVNAKVSTIYHVTTAPCYDKKVEALKAQNGVDLSG 301
Query: 250 QEETY--RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT---------- 297
+ E ++ VD V++TG++ +++L ++F L E+ LD M T
Sbjct: 302 LYNRFMPTQEKHQVQLVDDVISTGDLQRIMELYNLDFATLPEADLDDMFTGKECFVFNKL 361
Query: 298 -------NVDDEGHLYGVAGS------------------------SGGYAETVFRHAAKT 326
N + + GS SGG A+ V AK
Sbjct: 362 FANETIRNTLEHQNAMSSNGSFQQLPIPLTYKPKRHLRPSSQHAQSGGLAQEVKAFTAKY 421
Query: 327 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
L + + ++F+ N D++E L + +KF + YGF+N+QNIV K+K +
Sbjct: 422 L--GIDDSAMQFQESINRDYKEATLLI-NNLAIKFVMAYGFRNIQNIVNKLKKMDHTMAY 478
Query: 387 VEVMACPSGCLNGGGQIKPKP 407
+EVMACP GC NG GQ+ P
Sbjct: 479 IEVMACPEGCFNGAGQVISPP 499
>gi|19548180|gb|AAL90459.1|AF446076_1 [Fe]-hydrogenase, partial [Piromyces sp. E2]
Length = 555
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 220/430 (51%), Gaps = 49/430 (11%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGIS 111
++ C+ C C + E+ E L +++ K K V++S +P R +LAE F
Sbjct: 152 MNFTKCVECGQCSQVCPVGAITERNECIEVLRHLDTKRKIVVVSTAPAIRVALAEEFNAE 211
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P K+ LK LG IFDT+ S DLT++E E I R + PM
Sbjct: 212 PDFDFTGKMVAGLKKLGFDYIFDTNFSADLTIMEEGTELITRLNEG---------GKFPM 262
Query: 171 LSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
+S CPGWI EK SY I +SS KSPQQ IGA IK + +K+ +P++I HV+V
Sbjct: 263 FTSCCPGWINMVEK---SYPEIRDNLSSCKSPQQMIGAVIKTYFAKKINAKPEDIIHVSV 319
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA R +F RD +P++D V+TT E++ L++LK +N L+
Sbjct: 320 MPCTAKKGEAKRPEF----------KRD---GVPDIDHVITTRELITLLKLKRINPSELK 366
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD 345
D L G+L+GV +GG E R A+ + G +E + E K IR D
Sbjct: 367 NEKFDSPLGIGSSAGNLFGV---TGGVMEAAVR-TAQIITG--VENPIPLGELKAIRGLD 420
Query: 346 ---FREVALEV-EGKTL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
V L+ +GK + ++ A+ G N+Q + K+K ++ ++ FVE+M CP GC+NGG
Sbjct: 421 GIKAASVPLKTKDGKDVNVRAAVVSGGANIQKFLEKLKKKELEFDFVEMMMCPGGCINGG 480
Query: 401 GQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GQ K PK + K +E +Y + L +NP + +Y E+L++P + + +H
Sbjct: 481 GQPK---SADPKVVAKKMERMYTMDDQASLRLSHENPEITQIYKEFLKEPNGHLSHELLH 537
Query: 459 TEYHPVVKSI 468
T Y+ K+I
Sbjct: 538 THYNDRSKAI 547
>gi|297544314|ref|YP_003676616.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842089|gb|ADH60605.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 581
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 222/430 (51%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ LK +G ++FDT + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKEGLNPEDIYVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A + G+ ++ ++F+ +R + R
Sbjct: 401 DEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIVEGRELD-KVDFEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E ++++G + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATIKIDGMDI-KVAIANGTGNAKKLLDKIKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ K E IY +++ + KNP ++ LY+E+L P SEK+ +HT Y
Sbjct: 512 IHNPNEMGKVKELRAKAIYEADKSLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
Query: 462 -----HPVVK 466
+P+V+
Sbjct: 572 SKKELYPLVR 581
>gi|240276342|gb|EER39854.1| nuclear prelamin [Ajellomyces capsulatus H143]
Length = 604
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 204/451 (45%), Gaps = 103/451 (22%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK----------------------- 88
V+ISL DCLACSGC+TSAE V++ QS E L+ ++
Sbjct: 27 VQISLTDCLACSGCVTSAEAVLVSLQSHAEVLNTLDSCAELRIDELNGCSNAQRLRENDA 86
Query: 89 --------------GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-------- 126
GK + S+SPQ+RASLA +GIS + + FL
Sbjct: 87 GFSAEGEQRTTESGGKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPEGLRAGGA 146
Query: 127 ---GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYA 182
G + DT+ R + L + +E S+++ E P+LSSACPGWICYA
Sbjct: 147 YGNGFTWVVDTNVMRQVCLELSVSEVTESLNSSKDTLIETFPAPKRPVLSSACPGWICYA 206
Query: 183 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 242
EK ++LP+IS +KSPQ G +K + + L +I+H+++MPC+DKKLEA+R++
Sbjct: 207 EKT-HPHVLPHISRLKSPQAITGTLLKTVLSKALNISSSQIWHLSIMPCFDKKLEASRQE 265
Query: 243 FVFQLDSQEETYRDEGLEIPE-------VDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
+ +G E VD V+T+ E+L L + ++ L PL
Sbjct: 266 LTDASWQDASSMTQKGHSTTESYSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSP 325
Query: 296 LTNVDDEGHLY-------------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
+ + + AG+SGGY H T + ++ + R
Sbjct: 326 SVPLFPDPYFAPFLFPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGR 381
Query: 343 NSDFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------- 382
NSD E AL G T++K A YGF+N+QN+VRK+K +
Sbjct: 382 NSDVIEYALISPSGATIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCA 441
Query: 383 ---------DYQFVEVMACPSGCLNGGGQIK 404
DY ++EVMACP GC NGGGQI+
Sbjct: 442 ATVSSTSATDYAYIEVMACPGGCTNGGGQIR 472
>gi|289578043|ref|YP_003476670.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9]
gi|289527756|gb|ADD02108.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9]
Length = 581
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 222/430 (51%), Gaps = 51/430 (11%)
Query: 55 SLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SLKD C++C CI + EK + ++ K V+ +P R +L E FG+
Sbjct: 185 SLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGM 244
Query: 111 SPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ V K+ LK +G ++FDT + DLT++E +E + R K + L
Sbjct: 245 -PIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLK---------NGGKL 294
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S PGWI + EK +I +S+ KSP +GA +K + +K G P++IY V++
Sbjct: 295 PMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGALVKSYYAEKEGLNPEDIYVVSI 353
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KKLE R + Q +D VD+VLTT E+ +I+ ++F L
Sbjct: 354 MPCTAKKLEIERPEM------QHNGIKD-------VDAVLTTRELARMIKEMGIDFVNLP 400
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++G ++GG E R A + G+ ++ ++F+ +R + R
Sbjct: 401 DEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIVEGRELD-KVDFEEVRGLEGVR 456
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E ++++G + K A+ G N + ++ K+K + +Y F+EVM CP GC+ GGGQ P
Sbjct: 457 EATIKIDGMDI-KVAIANGTGNAKKLLDKIKAGEVEYHFIEVMGCPGGCIMGGGQ----P 511
Query: 408 GQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+P E+ K E IY +++ + KNP ++ LY+E+L P SEK+ +HT Y
Sbjct: 512 IHNPNEMGKVKELRAKAIYEADKSLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHY 571
Query: 462 -----HPVVK 466
+P+V+
Sbjct: 572 SKKELYPLVR 581
>gi|397904027|ref|ZP_10504958.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
gi|343178773|emb|CCC57857.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
Length = 577
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 211/418 (50%), Gaps = 40/418 (9%)
Query: 55 SLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C+ C CI + L EK+++ E I N K V++ +P R +L E FG+
Sbjct: 183 SLADTVCINCGQCIMACPVGALHEKENIKEVWMAISNPEKFVVVQTAPAVRVALGEEFGM 242
Query: 111 SPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P+ +V K+ L+ LG +FDT DLT++E E + R + + L
Sbjct: 243 -PIGTRVTGKMVAALRRLGFDKVFDTDFGADLTIMEEGTELLNRLNKGER---------L 292
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+++S CPGW+ + E + +S+ KSP + GA IK + +K+G P I V++
Sbjct: 293 PLMTSCCPGWVKFVEHYY-PEMTENLSTCKSPSEMEGALIKTYFAEKMGIDPKNIVTVSI 351
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK E RE+ GL+ +VD VLTT E+ +I+ ++F L
Sbjct: 352 MPCVGKKFEGQREELSHN-----------GLQ--DVDYVLTTRELAQMIKEAGIDFVNLP 398
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D G ++G ++GG E R + + GK +E ++E +R + +
Sbjct: 399 DEEFDNPFGESTGAGVIFG---ATGGVTEAALRTIYEIVTGKELE-NIEITAVRGVEGIK 454
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKP 405
E +E+ GK ++K A+ +G N + ++ VK + Y F+EVMACP GC+ GGGQ +
Sbjct: 455 EAEIELNGK-VVKAAIAHGLANARRVLEMVKSGEKHYDFIEVMACPGGCVTGGGQPIVDA 513
Query: 406 KPGQSPKELIKTLETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K + ++ + IY E+ L KNP V LY+E+L +P S K+ + +HT Y
Sbjct: 514 KTRERVDVRVERAKAIYEEDRHLPIRKSHKNPYVIRLYEEFLGEPNSHKSHELLHTHY 571
>gi|342184637|emb|CCC94119.1| putative iron-containing hydrogenase [Trypanosoma congolense
IL3000]
Length = 476
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 221/445 (49%), Gaps = 53/445 (11%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
+ FS +L + + D+IAPS+ C++ + +S ++A VKI+L+DCLA
Sbjct: 3 ANSFSASLMLAGM-DYIAPSEACILPTQMQNAVGSSGSITRHNSTKEA--VKITLQDCLA 59
Query: 62 CSGCITSAETVMLEKQSLDEFL--SNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
CSGC+T+AET+++ QS DE L + + ++S+S QS AS+A GI + F+ +
Sbjct: 60 CSGCVTTAETILITSQSRDELLRERSAEPTRPFLVSISDQSAASIAAFLGIDIQRTFRLI 119
Query: 120 TTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
+ F ++ L + + D + ++ + E+ R + ++ LP++ SACPGW
Sbjct: 120 SGFFRTVLDARYVVDLRWALRISAEKTAEEYCRRMRYERD--------RLPLIVSACPGW 171
Query: 179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
+CY EKQ GS +L + V SPQ G+ K + I HV+V PC+D+KLEA
Sbjct: 172 VCYCEKQ-GSAVLSLLCPVLSPQGIAGSYTKRIV--------PGICHVSVQPCFDRKLEA 222
Query: 239 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN 298
AR+ D+ E D VL+T E+L+ + + + +PLD L
Sbjct: 223 ARD---VSGDTGERY----------TDFVLSTQELLEWMLEQDASLPW--AAPLDSYLEP 267
Query: 299 V------DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSDFREVAL 351
+ + +G L SGGY HAA+ L VI + ++ RN + +
Sbjct: 268 LPPLPPQEADGCLAANMEGSGGYHRLAMHHAARELHNVVISPCDIRYEMKRNINHQLAT- 326
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMR---KCDYQFVEVMACPSGCLNGGGQIKPKPG 408
G F + YGFQ +QN VR +K + Y F+E+MACP GCLNGGGQ +
Sbjct: 327 -SHGNPGEVFCVAYGFQQIQNTVRGLKRKLSSMTPYTFIELMACPEGCLNGGGQARGNTD 385
Query: 409 QSPKEL---IKTLETIYLENVMLAD 430
S E+ +K YL +L++
Sbjct: 386 VSRGEVQSAVKEAFKSYLRGGVLSE 410
>gi|358062271|ref|ZP_09148917.1| hypothetical protein HMPREF9473_00979 [Clostridium hathewayi
WAL-18680]
gi|356699400|gb|EHI60914.1| hypothetical protein HMPREF9473_00979 [Clostridium hathewayi
WAL-18680]
Length = 582
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/415 (33%), Positives = 203/415 (48%), Gaps = 44/415 (10%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C++C CI T L EK +D+ L+ I + K VI+ +P RA L E FG P+
Sbjct: 192 CVSCGQCIAVCPTGALREKDYIDDVLAAIADPDKHVIVQTAPAVRAGLGEEFGY-PIGTN 250
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G +FDT+ S DLT++E +EFI R + LPM++S
Sbjct: 251 VEGKMAAALRRIGFDKVFDTNFSADLTIMEEAHEFIERVQHG---------GVLPMITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E + +SS KSPQQ GA K + +K G +P +I V++MPC K
Sbjct: 302 SPGWIKYCEHYFPD-MTENLSSCKSPQQMFGAIAKSYYAEKQGLKPKDIVSVSIMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R D +P+VD LTT E+ +I+ + F L + D
Sbjct: 361 KFEIGRNDQAAN-------------GVPDVDYSLTTRELARMIKKLGIRFNELPDEEFDA 407
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVA 350
L G G A G++GG E R A +TL G+ + L+F +R + +E
Sbjct: 408 PL------GLGTGAAVIFGATGGVMEAALRTAVETLTGEELAA-LDFTDVRGMEGIKEAT 460
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
V G + K A+ G N + ++ KVK + DY F+E+M CP GC+NGGGQ +
Sbjct: 461 YPVAGMDV-KVAVASGLGNAKKLLDKVKSGEADYHFIEIMGCPGGCVNGGGQPQQPGPVR 519
Query: 411 PKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L L + +P + NP ++ LYD +L +PGSE A +HT Y
Sbjct: 520 NTVDVRALRAQVLYDSDKNNPIRKSHENPAIKELYDTYLGRPGSEMAHHLLHTTY 574
>gi|402847751|ref|ZP_10896023.1| Periplasmic [Fe] hydrogenase large subunit [Rhodovulum sp. PH10]
gi|402501986|gb|EJW13626.1| Periplasmic [Fe] hydrogenase large subunit [Rhodovulum sp. PH10]
Length = 623
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 201/411 (48%), Gaps = 37/411 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISP-LQV 115
C+ C C+ T L E+ D L + + + ++ +P R E FG+ P V
Sbjct: 217 CVTCGQCVLVCPTGALGERDETDRALEMMYDPELITVVQFAPAVRVGFGEEFGLPPGTNV 276
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ T L+ LG + DT+ DL ++E E + R K+ Q P SS C
Sbjct: 277 EGQIITALRMLGADIVLDTNWGADLVIMEEGTELLHRLKKKQR----------PTFSSCC 326
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI + E+ I+P +SS KSPQQ +G K ++ +K+G P +I ++VMPC KK
Sbjct: 327 PAWINFVERHYPD-IIPMLSSTKSPQQCVGTLAKTYLPEKMGIDPKKIRVISVMPCIAKK 385
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK- 294
E AR +PEVD VL+T E L+Q + ++ ++LE S D
Sbjct: 386 DEIARRQLSHD-------------GVPEVDVVLSTREFARLLQREHIDLKSLEPSGFDNP 432
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
++ G ++G ++GG E R + GK +E H+E + +R + A
Sbjct: 433 YMSEYSGAGAIFG---TTGGVMEAAIRTMYFVVNGKELE-HVEIEELRGFEGVRTATVAL 488
Query: 355 GKTL--LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G + +K A+C+G + + IV V+ K D F+E+MACP GC++GGG ++ K P
Sbjct: 489 GGEIGDVKIAMCHGLKPTRQIVELVRSGKSDLDFIEIMACPGGCVDGGGTLRSKKAYLPH 548
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K ET++ + +N V++LY ++L +P SEKA +HT Y
Sbjct: 549 AL-KRRETLFGIDRKKAVRQSHRNEQVQALYRDYLGEPDSEKAHHLLHTWY 598
>gi|325290297|ref|YP_004266478.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
gi|324965698|gb|ADY56477.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
Length = 525
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 210/423 (49%), Gaps = 29/423 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGISPL--Q 114
C+ C C + + EK +D+ L I + V++ +P +R L E FG+ P+
Sbjct: 115 CVNCGQCTHWCPSGAITEKDEIDKVLQAIEDPEITVVVQTAPATRVGLGEEFGM-PIGTN 173
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K L+ LG +IFDT+ + DLT++E E + R N P L+S
Sbjct: 174 VEGKQVAALRKLGFDTIFDTTFTADLTIMEEGTELVKRVTG-------ELNKPTPQLTSC 226
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + E ++P +SS KSPQQ GA IK + + P++I+ V++MPC K
Sbjct: 227 CPGWVKFVE-YFYPDLIPNLSSAKSPQQMAGALIKTYFAKTQKIDPEKIFSVSIMPCTAK 285
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R +F S ++ ++D +VD VLTT E+ +I+ K ++F +L++ DK
Sbjct: 286 KFEAQRSEF----SSADKEFKDS-KATADVDVVLTTKELAKMIKKKGIDFASLQDEKYDK 340
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALE 352
++ G ++ G++GG E R + + L +R + +E ++
Sbjct: 341 LMGEGTGAGVIF---GATGGVMEAAIRSVYYLVTKQAPPAALWNLTPVRGLTGVKEASVN 397
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+ G +K A+ G N + ++ +VK + F+EVMACP GC GGGQ P+ P
Sbjct: 398 IPGLGDVKVAVISGLANARKVMDQVKAGNASWAFIEVMACPGGCQYGGGQ--PRAAAPPS 455
Query: 413 ELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+ I+T + L +N + + +N + +Y ++L P S A++ +HTEY +
Sbjct: 456 DTIRTQRSNSLYTLDKNAKVRNSHENTEITQIYKDYLHAPMSHLAEEILHTEYESRANTF 515
Query: 469 TAQ 471
T Q
Sbjct: 516 TPQ 518
>gi|169335143|ref|ZP_02862336.1| hypothetical protein ANASTE_01550 [Anaerofustis stercorihominis DSM
17244]
gi|169257881|gb|EDS71847.1| hydrogenase, Fe-only [Anaerofustis stercorihominis DSM 17244]
Length = 581
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 213/428 (49%), Gaps = 43/428 (10%)
Query: 48 QAEPVK---ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRA 102
++ PVK ++ +C+ C CI + + EK ++DE + ++ K V++ +P RA
Sbjct: 174 KSRPVKGDVLADTNCINCGQCIINCPVGALTEKVNVDEVWEALSDENKHVVVQPAPAVRA 233
Query: 103 SLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD 161
+L E FG V K+ ++ LG +FDT D+T++E E + R
Sbjct: 234 ALGEEFGYEIGTDVTGKMVASMRRLGFDKVFDTDFGADMTIMEEAYELVDRVTNG----- 288
Query: 162 ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD 221
+LPM++S CP W+ E++ +L +SS KSPQ GA IK H + P
Sbjct: 289 ----GTLPMVTSCCPAWVKMCEQEY-PELLDNLSSCKSPQAMTGALIKTHYAEVNNIDPK 343
Query: 222 EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA 281
+IY V+VMPC KK E ARE +E+ D D +TT E+ +I+
Sbjct: 344 DIYVVSVMPCVAKKFEVAREQL------KEDDLFDS-------DVCITTRELARMIKEAG 390
Query: 282 VNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 341
++F+ L++ D + G ++G ++GG E R A + + G+V E +++++ +
Sbjct: 391 IDFKNLDDEDFDPIYGESSGAGVIFG---ATGGVMEAAARTAVEAITGEVCE-NVDYEAV 446
Query: 342 RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
R D + A G +K A+ +G N++ ++ KVK + DY F+E MAC GC+NGGG
Sbjct: 447 RGLDGLKEATITAGDKEIKVAVVHGGANIKKLMDKVKKGEADYDFIECMACIGGCVNGGG 506
Query: 402 QIKP-------KPGQS-PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 453
Q P G S P+E K L + +NP V+ +Y E+LE+P S KA
Sbjct: 507 Q--PIVNSQLINAGLSLPQERAKVLYNQDKNVRPVRKSHENPSVQKVYKEFLEKPNSHKA 564
Query: 454 KKHVHTEY 461
+ +HT Y
Sbjct: 565 HEILHTTY 572
>gi|297616331|ref|YP_003701490.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
gi|297144168|gb|ADI00925.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Length = 574
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 219/414 (52%), Gaps = 43/414 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS----P 112
C+ C CI + + EK+ +DEFL+ + + K V+ ++P R ++ E G++ P
Sbjct: 189 CVMCGQCIHACPVGAISEKEQIDEFLAAVADPDKIVVTQIAPAVRTAIGEEVGMATGEMP 248
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
++VF L+ +G + T+ + DLT++E NE + R K+ LPM +
Sbjct: 249 MEVF---VAGLRQIGFDYVLHTNFTADLTIMEEGNELLKRLKE---------GGKLPMFT 296
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S PGWI + E +L ++S+ KSPQQ GA +K + QK+G P +IY V++MPC
Sbjct: 297 SCSPGWINFCET-FYPDLLEHLSTCKSPQQMFGALVKTYWAQKMGIDPSKIYSVSIMPCT 355
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA+R + ++ YRD VD VLTT EV L ++ ++F+ L S
Sbjct: 356 AKKFEASRPEM------KDSGYRD-------VDLVLTTREVGRLFRMAGIDFKTLTPSKF 402
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D + ++ G++GG E R + + GK +E + F R + +E +
Sbjct: 403 DSWMGAYTGAAVIF---GATGGVMEAALRTVYEVVTGKTLE-DVNFTFARGMEGIKEAEI 458
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
+++G T +K A+ +G N + ++ +V+ + Y F+E+MACP GC+ GGGQ K
Sbjct: 459 DLDG-TKVKVAIGHGLANARKLMDQVRAGQSPYHFIEIMACPGGCIGGGGQPLTKTNAKR 517
Query: 412 KELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
E I ++IY+E+ + + +NP V+ LY+E+L +P K+ + +HT YHP
Sbjct: 518 AERI---DSIYVEDESLPIRKSHENPEVKILYEEFLHEPLGHKSHELLHTHYHP 568
>gi|89897458|ref|YP_520945.1| hydrogenase large subunit [Desulfitobacterium hafniense Y51]
gi|89336906|dbj|BAE86501.1| putative hydrogenase large subunit [Desulfitobacterium hafniense
Y51]
Length = 555
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 204/412 (49%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E++ +D+ + K V++ +P +R L E FG+ V
Sbjct: 143 CINCGQCIHWCPSGAISEREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNV 202
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG IFDT+ + DLT++E E + R + LP +S C
Sbjct: 203 QGKQVAALRKLGFDVIFDTNFAADLTIMEEGTELVKRITG-------ELHHPLPQFTSCC 255
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +LP +SS KSPQQ GA +K + +K P +I+ V +MPC KK
Sbjct: 256 PGWVKFVEYYY-PELLPNLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKK 314
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + + S + ++DE + P+VD VLTT E+ +I+ ++ +L + D++
Sbjct: 315 FECQRPEMI----SAQTYWQDEQVS-PDVDVVLTTRELARMIKRAGIDLPSLPDEEYDQL 369
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A + G+ L + +R + +E A+ +
Sbjct: 370 MGVATGAGAIF---GTTGGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGMEGVKEAAVSI 426
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G ++ A+ G N + I+ +VK + F+EVMACP GC GGGQ P+ P +
Sbjct: 427 PGAGEIRIAVISGLDNARAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQ--PRSSAPPSD 484
Query: 414 LIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L + L + NP ++ +Y E+L P SEKA++ +HT Y
Sbjct: 485 GVRNTRAASLYKIDAQAKLRNSHDNPQIKQVYAEFLTAPLSEKAEELLHTHY 536
>gi|154498755|ref|ZP_02037133.1| hypothetical protein BACCAP_02746 [Bacteroides capillosus ATCC
29799]
gi|150272145|gb|EDM99349.1| hydrogenase, Fe-only [Pseudoflavonifractor capillosus ATCC 29799]
Length = 584
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 210/418 (50%), Gaps = 44/418 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
DC++C CI + T L EK + + +N K V++ +P R +L E FG+ P+
Sbjct: 192 DCVSCGQCIVACPTGALQEKDDTAKVWAALNDPTKHVVVGPAPSIRVTLGECFGM-PIGT 250
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ T L+ LG +FD + D T++E EF+ R + + +LP+++S
Sbjct: 251 NVEGKMVTALRRLGFDKVFDVDNAADFTIMEEGTEFLHRLQ---------NGGTLPLITS 301
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI + E+ ++P +SS KSPQQ G +K + +K+G P +I+ V++MPC
Sbjct: 302 CSPGWIRFCEQHYPD-MVPNLSSCKSPQQMFGTLVKTYYAEKMGINPRDIFVVSIMPCTA 360
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ R G +P VD LTT E+ +I + F+ L + D
Sbjct: 361 KKYEVRREEM-----------RQHGW-LP-VDVSLTTRELGRMITRAGLLFQNLPDGEFD 407
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH---LEFKTIRN-SDFREV 349
+ML ++ G+SGG E R T+ V +G LEF +R + +E
Sbjct: 408 EMLGVSTGAATIF---GASGGVMEAALR----TVVEIVTKGEMKPLEFTEVRGMTGIKEA 460
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ ++ GKT ++ + G N + ++ VK + Y F+E+MACP GC+NGGGQ
Sbjct: 461 SYDLPGKT-VRVCVTSGLANAKKVLDGVKSGEMQYDFIEIMACPGGCINGGGQPIQHADV 519
Query: 410 SPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
I++L L E + +NP+V+ +Y E+L +PG +A + +HT Y P
Sbjct: 520 RNWTDIRSLRAKALYTQDEGMTYRRSHENPIVQQVYKEYLGEPGGHRAHELLHTTYVP 577
>gi|219670623|ref|YP_002461058.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
gi|219540883|gb|ACL22622.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
Length = 527
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 204/412 (49%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E++ +D+ + K V++ +P +R L E FG+ V
Sbjct: 115 CINCGQCIHWCPSGAISEREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNV 174
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG IFDT+ + DLT++E E + R + LP +S C
Sbjct: 175 QGKQVAALRKLGFDVIFDTNFAADLTIMEEGTELVKRITG-------ELHHPLPQFTSCC 227
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +LP +SS KSPQQ GA +K + +K P +I+ V +MPC KK
Sbjct: 228 PGWVKFVEYYY-PELLPNLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKK 286
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + + S + ++DE + P+VD VLTT E+ +I+ ++ +L + D++
Sbjct: 287 FECQRPEMI----SAQTYWQDEQVS-PDVDVVLTTRELARMIKRAGIDLPSLPDEEYDQL 341
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A + G+ L + +R + +E A+ +
Sbjct: 342 MGVATGAGAIF---GTTGGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGMEGVKEAAVSI 398
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G ++ A+ G N + I+ +VK + F+EVMACP GC GGGQ P+ P +
Sbjct: 399 PGAGEIRIAVISGLDNARAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQ--PRSSAPPSD 456
Query: 414 LIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L + L + NP ++ +Y E+L P SEKA++ +HT Y
Sbjct: 457 GVRNTRAASLYKIDAQAKLRNSHDNPQIKQVYAEFLTSPLSEKAEELLHTHY 508
>gi|403223290|dbj|BAM41421.1| uncharacterized protein TOT_030000682 [Theileria orientalis strain
Shintoku]
Length = 630
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 143/570 (25%), Positives = 245/570 (42%), Gaps = 156/570 (27%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKA---------------------TFK-NPDKPQVS 42
+S ++IG L+D+++PS +CV+ L K +FK N K +
Sbjct: 2 YSNAVKIGGLNDYLSPSADCVLPLIKKDEKCEIKLNDKTLNLDRHADQSFKSNVLKEDIY 61
Query: 43 TSSK------QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISL 96
++K + + + L DCL+CSGC+TS+E ++L+ + + + + + S+
Sbjct: 62 ANNKLKVTRVDKNNKISVGLSDCLSCSGCLTSSEEILLKDDNYSRVVEKMKESNVCVASI 121
Query: 97 SPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
SPQ+ + ++ + +V ++L+ + LG K +FD S L L + EF+A+Y++
Sbjct: 122 SPQTVFMYSSYYDMEAEEVLQRLSYLFRKLGAKLVFDIGFSELLALNLSKKEFMAKYQRK 181
Query: 157 Q----------------------ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
Q + DE S LP++SS CPGW YAEK L ++ I
Sbjct: 182 QTGSTSGSPNHTKKDAEREATADSASDENRCSRLPIISSHCPGWTLYAEKTLDQDLVDKI 241
Query: 195 SSVKSPQQTIGATIKHHICQKLGF------------------------RPDEIYHVTVMP 230
S V S Q G +K +C + + + D++YHV ++P
Sbjct: 242 SEVPSSQIIQGLLVK-ILCHTMNYYRRIYNINYFRLFYSLDLTHDKDSKNDKVYHVCIVP 300
Query: 231 CYDKKLEAAREDFVFQL--------------DSQEETYRDEGLEIPE--VDSVLTTGEVL 274
CYDKK E R ++ D E+ +E ++ E VD +L+T +V
Sbjct: 301 CYDKKFETIRTEYQIDFNSLLDHKQYDSKDQDQHEQEKNEEQVDEKESIVDDILSTSDVQ 360
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS----------------------- 311
++ + FE L++ +D ++ G+ S
Sbjct: 361 KILDDMNIRFEDLKKCEIDYLVDYTYYFNRFMGLRRSKESEERERFRRVRENDDIYDSIS 420
Query: 312 -------------SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG--K 356
SGG+AE +F+ A K + K I+ +EFK NSDF+E L K
Sbjct: 421 LRKLIRSSELYCESGGFAEEIFKWACKEIHSKSIKS-VEFKQTINSDFKECVLYDSNNEK 479
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCD--------------YQFVEVMACPSGCLNGGGQ 402
LL+F + YGF+N++N+++ +K + ++E+M+CP GC NG GQ
Sbjct: 480 VLLRFIIAYGFKNVKNVIKMLKTMQSSSNRSSKNDVIGGSRLDYIELMSCPGGCFNGAGQ 539
Query: 403 ------------IKPKPGQSPKELIKTLET 420
I+ +P EL++ L+T
Sbjct: 540 AIVSKRKAERGLIESISKYAPAELVRWLKT 569
>gi|254584624|ref|XP_002497880.1| ZYRO0F15642p [Zygosaccharomyces rouxii]
gi|186703732|emb|CAQ43423.1| Nuclear architecture-related protein 1 [Zygosaccharomyces rouxii]
gi|238940773|emb|CAR28947.1| ZYRO0F15642p [Zygosaccharomyces rouxii]
Length = 484
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 167/518 (32%), Positives = 243/518 (46%), Gaps = 95/518 (18%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSS------KQQAEP--V 52
MS K S DL+D+IAP C+ ++ T S ++ +EP V
Sbjct: 1 MSAKLSEE----DLNDYIAPGPICINPAGSSSSNKAASNANGTPSDELEVGQESSEPEKV 56
Query: 53 KISLKDCLACSGCITSAETVMLEKQS----LDEFLSNINKGKAVIISLSPQSRASLAEHF 108
ISL+DCLAC+GCITS+E V+L KQS LD + K ++IS++PQ R SLA++F
Sbjct: 57 SISLQDCLACAGCITSSEEVLLSKQSHTVFLDAWKQLQGSSKILVISVAPQCRLSLAQYF 116
Query: 109 GISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE-SDDERSNS 166
G+S Q+ K L S L + T R + I+ NE + + K+ Q ++D +
Sbjct: 117 GLSLPQMDKALLNIFASVLHCRYAVGTELGR-VIAIQHTNEHLFKLKKQQSINNDGNTKR 175
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHV 226
P L S CPG++ YAEK ++P + +VKSPQQ G+ +K + + EIYH+
Sbjct: 176 GTPRLCSVCPGFVLYAEKTR-PELVPLLLNVKSPQQVTGSLLKQTLPPE-----QEIYHL 229
Query: 227 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA 286
++MPC+DKKLEA+R D V +EG VD VLT E L ++Q ++ +
Sbjct: 230 SLMPCFDKKLEASRPDAV-----------EEG-----VDCVLTPREFLAIMQELQIDIKD 273
Query: 287 -----LEESPLDKMLTNVDDEGHLYGVAGSS-GGYAETVFRHAAKTLFGKVIEGHLEFKT 340
L S + D + H AGSS GGYA R+ G I
Sbjct: 274 HLNVDLAASAHELSPPGWDPQVHWASNAGSSSGGYAFQYARYLQSLNPGSQIH----ILN 329
Query: 341 IRNSDFRE---VALEVEGKTLLKFALCYGFQNLQNIVRKVK------------------- 378
RN D RE A + + K + YGF+N+QN+VRK+K
Sbjct: 330 GRNGDVREYRVTASDDQQKVFGSTSELYGFRNIQNMVRKLKGAQRGGRVVVRKRGANKGD 389
Query: 379 -------MRKCDYQ--FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 429
M+ Y+ F+EVMACP GC+NGGG + + + + L+ Y + +
Sbjct: 390 SAQNGATMQADPYEGEFIEVMACPGGCINGGGLLSGESSVKRRATAQVLDERYEKEFVEL 449
Query: 430 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
DP PL GS K + + E+H + KS
Sbjct: 450 DPLNLPL------------GSASEKSYEY-EFHAIEKS 474
>gi|332981829|ref|YP_004463270.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
gi|332699507|gb|AEE96448.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
Length = 582
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 234/472 (49%), Gaps = 47/472 (9%)
Query: 8 TLRIGDLSDFIAPSQNCVVSLKK--ATFKNPDKPQVSTSSKQQAE-----PVKISLKD-- 58
TL I DLS I N + ++ +T +N + V ++++ P K+S+
Sbjct: 133 TLPIDDLSPAIVRDPNKCILCRRCISTCRNVQEIGVIGATERGFNTMVEPPFKMSINQVP 192
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI + L EK + + + + V++ +P RA+L E FG+ P+ +
Sbjct: 193 CINCGQCIEACPVGALREKDDTERVWTALADPELHVVVQTAPAVRAALGEEFGM-PIGTR 251
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E E + R K + LP+++S
Sbjct: 252 VTGKMAAALRRLGFDKVFDTDFAADLTIMEEGTELLDRLK---------NGGKLPLITSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E + L +SS KSP + +GA +K + QK+ P +I+ V+VMPC K
Sbjct: 303 SPGWVKYCEHYYPEF-LDNLSSCKSPHEMMGAVLKSYYAQKMNIDPSKIFVVSVMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + P+VD V+TT E+ +I+ +NF AL + D
Sbjct: 362 KFEAQRPELAANGH-------------PDVDVVITTRELARMIKEAGINFLALPDESFDD 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++GV +GG E R A+ L G+ +E ++EF +R + R +++
Sbjct: 409 PLGISTGAGVIFGV---TGGVMEAALRTVAEILTGEELE-NIEFGVVRGLEGIRTASIDA 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T+ K A+ G N ++ ++K + Y F+E+M CP GC+NGGGQ Q
Sbjct: 465 GGVTI-KAAVANGTANAAALLDRIKSGQEHYDFIEIMGCPGGCINGGGQPILTAQQRWDI 523
Query: 414 LIKT--LETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK + +Y E ++ + +NP ++++Y+E+L +P S A + +HT Y
Sbjct: 524 DIKAERAKALYQEDRDMPIRKSHENPQIKAIYNEFLGKPNSHTAHELLHTHY 575
>gi|423076298|ref|ZP_17065011.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
gi|361852658|gb|EHL04881.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
Length = 554
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 204/412 (49%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E++ +D+ + K V++ +P +R L E FG+ V
Sbjct: 142 CINCGQCIHWCPSGAISEREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNV 201
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG IFDT+ + DLT++E E + R + LP +S C
Sbjct: 202 QGKQVAALRKLGFDVIFDTNFAADLTIMEEGTELVKRITG-------ELHHPLPQFTSCC 254
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +LP +SS KSPQQ GA +K + +K P +I+ V +MPC KK
Sbjct: 255 PGWVKFVEYYY-PELLPNLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKK 313
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + + S + ++DE + P+VD VLTT E+ +I+ ++ +L + D++
Sbjct: 314 FECQRPEMI----SAQTYWQDEQVS-PDVDVVLTTRELACMIKRAGIDLPSLPDEEYDQL 368
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A + G+ L + +R + +E A+ +
Sbjct: 369 MGVATGAGAIF---GTTGGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGMEGVKEAAVSI 425
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G ++ A+ G N + I+ +VK + F+EVMACP GC GGGQ P+ P +
Sbjct: 426 PGAGEIRIAVISGLDNARAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQ--PRSSAPPSD 483
Query: 414 LIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L + L + NP ++ +Y E+L P SEKA++ +HT Y
Sbjct: 484 GVRNTRAASLYKIDAQAKLRNSHDNPQIKQVYAEFLTAPLSEKAEELLHTHY 535
>gi|383786526|ref|YP_005471095.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
gi|383109373|gb|AFG34976.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
Length = 668
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 206/411 (50%), Gaps = 38/411 (9%)
Query: 53 KISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI- 110
K+ +C+ C C+ T L + +D+ I +GK VI ++P RASL E FG+
Sbjct: 181 KLENTECVLCGQCVAYCPTGALAIRNDVDKVYKAIEEGKYVIGMVAPAVRASLQEEFGLE 240
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ ++ + LK +G K +FD + + DL E +EFI R ++ ++ LP
Sbjct: 241 DDMAAAGRMVSLLKMIGFKKVFDVAFAADLVTYEEAHEFIERLEKGEK---------LPQ 291
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ +AE+ Y L +SSVKSPQ +GA IK +++G P +I V++MP
Sbjct: 292 FTSCCPGWVKFAEQYYPEY-LANLSSVKSPQMALGAIIKKFYAKEIGVDPKDIVLVSIMP 350
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+F +VD VLTT EV+ +I+ ++ +E
Sbjct: 351 CTAKKFEAEREEFN-----------------GDVDIVLTTREVVKIIKSTGIDIRMVEPE 393
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
P D+ G + G SGG +V + + K ++E K I + R +
Sbjct: 394 PFDRPFGLSSQSGLSF---GKSGGVLGSVVNVINEIIGIK----NIETKQI-SEGVRLIT 445
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ ++K +G N + IV +K + D VEVMAC GC+ GGGQ P ++
Sbjct: 446 IELSNGKVVKGIAVFGLGNTRKIVDSIKAGELDVDIVEVMACNYGCIGGGGQPYPNDVRT 505
Query: 411 PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ K L + +V+++ P +N + LY+ +L +P S +A + +HT Y
Sbjct: 506 REKRAKILREVQSIDVLIS-PTENFHMLQLYERYLNKPLSHEAHEVIHTHY 555
>gi|50953715|gb|AAT90438.1| plastid FeFe-hydrogenase precursor [Chlamydomonas moewusii]
Length = 458
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 200/395 (50%), Gaps = 49/395 (12%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
K ++S++P R +++E G++P V +L L+ LG +FDT+ + DLT++E E
Sbjct: 78 KLTVVSVAPAVRVAISEALGLAPGAVTPGQLVAGLRRLGFTKVFDTNLAADLTIMEEGTE 137
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 206
+ R E + +PM +S CPGWI EK SY ++PY+SS KSPQ +GA
Sbjct: 138 LLHRLADHLEGHP-KQEEPMPMFTSCCPGWIQMVEK---SYPELIPYLSSCKSPQMMMGA 193
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
IK+ ++ G +P +I +VMPC K+ EA R + + +VD
Sbjct: 194 VIKNFFAEEAGVKPGDIISCSVMPCVRKQGEADRPMMTTTAEGR------------DVDH 241
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 326
V+TT E+ ++ + ++ +L + D L G L+ G++GG E R +
Sbjct: 242 VITTVELAQMLTERGIDLTSLPDEEFDCPLGIGSGGGQLF---GTTGGVMEAALRTVVEL 298
Query: 327 LFGKVIEGHLEFKTIR----------------NSDFREVALEVEGKTL-LKFALCYGFQN 369
+ G+ + G + F+ +R NS F + EGK L ++ A+ G N
Sbjct: 299 VSGQPM-GRIVFEDVRGLEGIKAATITLQPAANSPFAK--YNPEGKGLDVRIAVANGLGN 355
Query: 370 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYL--ENV 426
+ ++ ++K Y F+EVMACPSGC+ GGGQ P + K+++ K + IY E
Sbjct: 356 AKKLITEMKAGTSKYDFIEVMACPSGCIGGGGQ----PRSADKQILQKRQQAIYTLDERA 411
Query: 427 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ +NP++ +LY WL++P SE A +HT Y
Sbjct: 412 VIRRSHENPIIAALYKRWLQEPCSETAHHLLHTHY 446
>gi|374297589|ref|YP_005047780.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
gi|359827083|gb|AEV69856.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
Length = 1148
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 214/417 (51%), Gaps = 44/417 (10%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQV 115
DC++C C+T+ L+ ++ + L I+ K +I ++P R+ +++ + I +
Sbjct: 672 DCVSCGQCVTACPCGALDYRRDKGKVLRAIHDNKKTVIGFVAPAVRSLISKTYNIPFEKT 731
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ LK LG +FD + + DLT++E EF+ R + +P +S C
Sbjct: 732 SAFMAGLLKKLGFDKVFDFTFAADLTIMEETTEFLTRIS---------NKGVMPQFTSCC 782
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E++ I+P++S+ KSPQ +GAT+K+H + G ++++ V+++PC KK
Sbjct: 783 PGWINFVERRYPE-IIPHLSTCKSPQMMMGATVKNHYAKLAGLNKEDLFVVSIVPCIAKK 841
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F + RD VD+VLTT E++++++L+ ++ +E D+
Sbjct: 842 YEAARPEFA------PDGIRD-------VDAVLTTTEMIEMVRLENIDVSQVEPQEFDEP 888
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
V G L+ G+SGG AE R A + L GK + L+F+ IR + +E ++V
Sbjct: 889 YRQVSGAGILF---GASGGVAEAALRMAVEKLTGKALTDQLDFEEIRGFEGVKEATVDVN 945
Query: 355 GKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
++ A+ G QN + I+ K ++ Y +EVMACP GC+ G G P E
Sbjct: 946 NAK-VRVAVVSGLQNAEPIIEKIIQGVDVGYDLIEVMACPGGCICGAGHPVP-------E 997
Query: 414 LIKTLETI--YLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 464
I +E L N+ ++ NP + LY+++ +P S A + +HT Y P+
Sbjct: 998 KIDDMEKRQQILVNIDKISKYRKSQENPDILRLYEDFYGEPNSHLAHELLHTHYTPM 1054
>gi|160902189|ref|YP_001567770.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
gi|160359833|gb|ABX31447.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
Length = 578
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 214/409 (52%), Gaps = 35/409 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C C C+ T ++E+ +DE + N+ K V++ +P R +LAE FG P +
Sbjct: 193 CTFCGQCVAVCPTGALVERSYIDEVWKELENEEKHVVVQTAPAVRVALAEEFGYEPGTIS 252
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KL LK +G +FDT+ DLT++E EF R + + LPML+S C
Sbjct: 253 TGKLVGALKLMGFDKVFDTNFGADLTIMEEATEFKERLE---------NGGFLPMLTSCC 303
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E Q +L SS KSPQQ GA K + QK P +I V++MPC KK
Sbjct: 304 PGWVKFIEHQFPD-LLEMPSSAKSPQQMFGAIAKSYYAQKNDIDPKKITVVSIMPCLAKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAARE ++++ E YRD VD VLTT E+ +I+ +NF+A+ E D
Sbjct: 363 YEAARE----EINASPE-YRD-------VDYVLTTRELAKMIKEAGINFKAVPEREYDSP 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVE 354
L ++ G +GG AE R A + + G ++ +EF+ + + VA +E+
Sbjct: 411 LGESTGAAAIF---GRTGGVAEAALRTAYEWITGNELK-EVEFEQLHGYESIRVAEVEIN 466
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
GK L+ + YG N + ++ V+ K D +E+MACP GC+ GGGQ P +
Sbjct: 467 GKK-LRVGVAYGLGNARKLLEDVQSGKIDLHLIEIMACPGGCVGGGGQ--PYHHGDFNVI 523
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K +E + + ++ ++ +NP + LY+E+LE+PGSEK+ + +HT Y
Sbjct: 524 KKRIEALNVVDKSKIIRKSHENPSIVRLYNEYLEKPGSEKSHQLLHTHY 572
>gi|339899721|gb|AEK22103.1| FeFe-hydrogenase [uncultured organism]
Length = 572
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 210/414 (50%), Gaps = 38/414 (9%)
Query: 53 KISLKDCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
+I+ +C C+ C A T + E ++ L + + K V++ +P +A++ E FG+
Sbjct: 191 EINCANCGQCAAVCPVGAITEVSEIDAVWRALED--EDKFVVVQTAPSIQATIGEEFGME 248
Query: 112 PLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V +L T L+ LG +F T + DLT++E EFIAR + N LP
Sbjct: 249 PGTVVTGQLVTALRMLGFDRVFPTEFTADLTIMEEGREFIARIQ---------GNKELPH 299
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CPGW+ YAE +L ++S+ KSPQQ K + Q++G P++I+ V+VMP
Sbjct: 300 ITSCCPGWVKYAEHNYPD-LLDHLSTAKSPQQMFSTLAKTYYAQQMGIDPEKIFTVSVMP 358
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E RE+ +RD G + + D+VLTT E+ +++ ++ L E
Sbjct: 359 CTAKKFEKNREE-----------HRDSGFQ--DTDAVLTTRELARMLKEVGIDLAHLHEE 405
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTIRNSDFREV 349
D ++ + ++ G++GG E R + L G+ ++ L F + +E
Sbjct: 406 DWDSLMGSQSGAASIF---GTTGGVTEAALRTVKELLTGEPLDRLDLGFMGV-----KEA 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+E+ G+T K A+ G ++ V+ K D ++EVMACP GC+ GGGQ P +
Sbjct: 458 EVEIAGRT-YKIAVVSGLAEAARLLDDVRAGKSDLDWIEVMACPHGCVGGGGQPLPNSRE 516
Query: 410 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + + L I NV + +NP + LY E+L +P +++ + +HT Y P
Sbjct: 517 NRAKRAQGLAQIDQHNV-IRKSHENPEIIQLYQEFLHEPLGDRSHELLHTTYQP 569
>gi|302875113|ref|YP_003843746.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|307690261|ref|ZP_07632707.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|302577970|gb|ADL51982.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
Length = 579
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 217/415 (52%), Gaps = 46/415 (11%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ T L + + ++ + + ++ K VI+ +P RA+L E FG+ P
Sbjct: 195 NCTNCGQCVAVCPTGALRETNDEDRVWDALDDEDKYVIVQTAPAIRAALGEQFGLKPGTN 254
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ + LK+LG K ++DT + DLT++E NE + R K +N LP+L+S
Sbjct: 255 VTGKMVSVLKALGFKKVYDTDFAADLTIMEEANELVNRIK---------NNKDLPLLTSC 305
Query: 175 CPGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGWI + E G ++ LP SS KSPQQ GA K ++ +KLG P ++ V++MPC
Sbjct: 306 CPGWIKFLEHNYGEFLNLP--SSCKSPQQMFGAIAKSYLAEKLGVDPKKMVVVSIMPCTA 363
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA+R++ ++D I +VD VLTT E+ +I+ ++ E+ D
Sbjct: 364 KKFEASRKE--MEVDG-----------IRDVDIVLTTRELSSMIRSAGLDLNDFEDDDFD 410
Query: 294 KMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
L G G A G+SGG E R A + + + +E ++F+ +R D + A
Sbjct: 411 NPL------GESTGAAVIFGNSGGVMEAALRTAYELITDQKLE-KIDFQAVRGLDGIKSA 463
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
G LK A+ G N + ++ +K + Y +E+MACP GC++GGGQ +
Sbjct: 464 TIKIGDLDLKIAVASGLGNARKLMESIKNGENQYAAIEIMACPGGCIDGGGQPFIR---G 520
Query: 411 PKELIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+E++K T L NV + ++P+++ +Y+++L + EKA K +HT Y
Sbjct: 521 DREILKK-RTAVLYNVDEGKDIRKSHESPIIKEIYNKYLIEANGEKAHKLLHTHY 574
>gi|334341940|ref|YP_004546920.1| hydrogenase Fe-only [Desulfotomaculum ruminis DSM 2154]
gi|334093294|gb|AEG61634.1| hydrogenase, Fe-only [Desulfotomaculum ruminis DSM 2154]
Length = 519
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/434 (29%), Positives = 213/434 (49%), Gaps = 30/434 (6%)
Query: 51 PVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ +D+ + + NK V++ +P +R L E F
Sbjct: 105 PIKDDIT-CVNCGQCTLWCPTAAITERDDIDKVIKALENKDMHVVVQTAPATRVGLGEEF 163
Query: 109 GISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G++P V K LK LG ++FDT+ S DLT+ E E I R +
Sbjct: 164 GMAPGTFVEGKQVAALKKLGFDAVFDTNFSADLTIFEEGTELIKRVTGEIKE-------P 216
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +L ++S+ KSPQQ +GA IK + ++ G P++I+ V+
Sbjct: 217 LPQFTSCSPGWVKFCE-YFYPDLLEHMSTCKSPQQMLGAMIKTYYAKEKGINPEKIFSVS 275
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK EAAR +++S E L +VD VLTT E+ LI++K ++ L
Sbjct: 276 IMPCTAKKFEAARP----EMNSAGEYAGKPNLR--DVDVVLTTRELARLIKMKNIDLNTL 329
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
E+ D ++ G ++ G++GG E R A + + E L +R
Sbjct: 330 PEAKYDSLMGESTGAGLIF---GATGGVMEAAIRSAYFLITKQEPPEALLNLTPVRGLPG 386
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
+E +++ G ++ A+ +G N + I+ V+ + Y F+E M CP GC++GGGQ P
Sbjct: 387 IKEAGVDIPGVGTVRVAVAHGLSNARPILEAVRKGESPYHFIEFMCCPGGCISGGGQ--P 444
Query: 406 KPGQSPKELIKTLETIYLENV-----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+ P + ++ L N +N V +LY+++LE P S A + +HT
Sbjct: 445 RTSLPPSDEVRKARIASLYNADAHVYAKRKSHENKEVLALYEKFLEHPNSHLAHELLHTH 504
Query: 461 YHPVVKSITAQLHN 474
Y K +T + N
Sbjct: 505 YEDRSKHLTVKKQN 518
>gi|373486339|ref|ZP_09577014.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
gi|372011914|gb|EHP12500.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
Length = 587
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 200/414 (48%), Gaps = 38/414 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C C+ T +Q E + + + K V++ ++P RA+L E FG+ V
Sbjct: 194 CIQCGQCVAVCPTAAFLEQDHTERVWKALAAEKKHVVVQVAPAIRATLGEMFGLPVGTPV 253
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KL T L+ LG +FDT+ DLT++E EF++R + + +LP+L+S
Sbjct: 254 TGKLVTALRRLGFDEVFDTNFGADLTIMEEATEFLSRVSKGE---------NLPLLTSCS 304
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + EK ++ + S+ KSP Q A IK + +K G P +I V +MPC KK
Sbjct: 305 PGWVSFLEK-FYPEMIRFTSTCKSPMQMTSALIKSYYAEKKGLDPKDICVVAIMPCVAKK 363
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + P D+VLTT E+ +I+ ++F L E D+
Sbjct: 364 FEAGRPEHTMANGD------------PYTDAVLTTRELGWMIKSYGIDFNVLPEGEFDRP 411
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
+ ++G ++GG E R AA L G+ + G LEF +R + +E +++
Sbjct: 412 MGISSGAADIFG---ATGGVMEAALRTAAVKLTGEEL-GPLEFAEVRGVTGIKEATIKIN 467
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP--- 411
G + A+ G N + ++ +K + +Y VE+MACP GC+ GGGQ P Q P
Sbjct: 468 GMEI-NIAVSNGLNNAKKLLESIKSGEKNYHLVEIMACPGGCIMGGGQPYPPVYQDPMDP 526
Query: 412 ---KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ K L I + L +NP + LY E+L +P EKA + +HT Y
Sbjct: 527 EISRARAKALYGIDAQK-QLRRSHENPAIAHLYAEFLGEPNGEKAHQLLHTTYQ 579
>gi|134298338|ref|YP_001111834.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134051038|gb|ABO49009.1| hydrogenase, Fe-only [Desulfotomaculum reducens MI-1]
Length = 520
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 222/435 (51%), Gaps = 32/435 (7%)
Query: 51 PVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ +D+ + + NK V++ +P +R L E F
Sbjct: 106 PIKNDIT-CVNCGQCTLWCPTAAITERDDIDKVVKALENKDLHVVVQTAPATRVGLGEEF 164
Query: 109 GISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G++P V K LK LG ++FDT+ S DLT+ E E I R S D +
Sbjct: 165 GMAPGTFVEGKQVAALKQLGFDAVFDTNFSADLTIFEEGTELIKRI-----SGD--LHEP 217
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +LP++S+ KSPQQ +GA IK + ++ G +P++I+ V+
Sbjct: 218 LPQFTSCSPGWVKFCEYYYPD-LLPHMSTCKSPQQMLGALIKTYYAKEKGIKPEKIFSVS 276
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-EIPEVDSVLTTGEVLDLIQLKAVNFEA 286
+MPC KK EAAR + + + G ++ +VD VLTT E+ LI+ K ++
Sbjct: 277 IMPCTAKKFEAARPEM-------NSSGKHAGKPQLKDVDVVLTTRELARLIKAKGMDLNN 329
Query: 287 LEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-S 344
L + D ++ G ++ G++GG E R A + + E L IR
Sbjct: 330 LPDKKYDSLMGEGTGAGLIF---GATGGVMEAAIRSAYFLITKQDPPEALLNLTPIRGLQ 386
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
+E ++++ G +K A+ +G N + I+ V+ ++ + F+E M CP GC++GGGQ
Sbjct: 387 GCKEASVDIPGVGTVKVAVVHGLSNARPILEAVRKKEAPWHFIEFMCCPGGCISGGGQ-- 444
Query: 405 PKPGQSPKELIK--TLETIYLENVML---ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
P+ P + ++ + +IY + + ++N V +LY++++E P S A + +HT
Sbjct: 445 PRTSLPPSDEVRQARINSIYNADAHIYSKRKSYENQEVLALYEKFMENPNSHLAHELLHT 504
Query: 460 EYHPVVKSITAQLHN 474
Y K +T + N
Sbjct: 505 HYTDRSKQLTVKKKN 519
>gi|78355522|ref|YP_386971.1| Fe-only hydrogenase, large and small subunits, cytoplasmic
[Desulfovibrio alaskensis G20]
gi|78217927|gb|ABB37276.1| Fe-only hydrogenase, large & small subunits, cytoplasmic
[Desulfovibrio alaskensis G20]
Length = 458
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 199/385 (51%), Gaps = 37/385 (9%)
Query: 84 SNINKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTL 142
+ +G ++ +P RA++ E FG+ + +L L+ LG ++DT+ + DLT+
Sbjct: 100 GRLAEGCHSMVQCAPAVRAAIGEEFGMPAGALTPGRLAAALRRLGFDRVYDTNFAADLTI 159
Query: 143 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202
+E +E + R + + LPM +S CP W+ YAE+Q +L ++SS KSPQQ
Sbjct: 160 MEEGSELLQRMEGA---------GPLPMFTSCCPAWVRYAEQQFPD-LLEHLSSCKSPQQ 209
Query: 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 262
GA K + Q G P +++ V VMPC KK EA R + + RD
Sbjct: 210 MAGAVFKSYGAQLDGVDPRQVFSVAVMPCTCKKAEAQRPGM------EHDGVRD------ 257
Query: 263 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 322
VD+VLTTGE+ +++ ++F AL + P D+ L + G+++G+ +GG E R
Sbjct: 258 -VDAVLTTGELAAMLRQAHIDFAALPDEPFDRPLGSYSGAGNIFGL---TGGVMEAALRT 313
Query: 323 AAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 381
A + + G+ + E +R + R L ++G+T + A+ G Q+++ ++ V+
Sbjct: 314 AYELVTGEPVP-CTELVYVRGGEGIRHATLTMDGRTF-RVAVVAGLQHVRPLLEAVRAGT 371
Query: 382 CDYQFVEVMACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYLENVMLA--DPFKNPL 436
CD FVEVM CP GC++GGGQ PK P Q + +Y + LA +NP
Sbjct: 372 CDVNFVEVMCCPQGCISGGGQ--PKVLLPFQRDEVYAARKAALYRHDAELACRKSHENPQ 429
Query: 437 VRSLYDEWLEQPGSEKAKKHVHTEY 461
V++LY E+L +P S + +HT Y
Sbjct: 430 VQALYREFLGEPLSHVSHNLLHTVY 454
>gi|374340836|ref|YP_005097572.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
gi|372102370|gb|AEX86274.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
Length = 577
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 215/411 (52%), Gaps = 40/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C C C+ T ++EK +D+ I + K V++ +P R +L E FG P +
Sbjct: 193 CTFCGQCVAVCPTGALVEKSYIDQVWDVIEDPTKHVVVQTAPAVRVALGEEFGYEPGTIS 252
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KL + LK LG +FDT+ S DLT++E +EF R + + +PML+S C
Sbjct: 253 TGKLVSALKVLGFDKVFDTNFSADLTIMEEASEFKERLE---------NGGYMPMLTSCC 303
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E Q +L SS KSPQQ GA K + QK G P +I V+VMPC KK
Sbjct: 304 PGWVKFLEHQFPD-LLEMPSSAKSPQQMFGAIAKTYYAQKAGIDPKDIVVVSVMPCLAKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ RD G + +VD V+TT E+ D+I+ +NF+ L E D
Sbjct: 363 YEANREEM-----------RDSGYK--DVDYVITTRELADMIRESGINFQNLPEGEYDNP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVE 354
L ++ G +GG AE R A + + G+ ++ ++F+ +R + +A ++++
Sbjct: 410 LGESTGAADIF---GRTGGVAEAALRTAYEWITGEELK-DVDFEALRGYEGVRIAEVDIK 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ ++ + +G N++ ++ ++ K + +EVMACP GC+ GGGQ P +
Sbjct: 466 GQK-IRIGVAHGLGNVRKLLEDIREGKVEVHLIEVMACPGGCVGGGGQ--PYHHGDFNII 522
Query: 415 IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K +E I + + P + NP ++ LYDE+LE+P SEK+ K +HT Y
Sbjct: 523 KKRMEAI--NKIDKSKPIRKSHENPSIKKLYDEFLEKPLSEKSHKLLHTRY 571
>gi|302679346|ref|XP_003029355.1| hypothetical protein SCHCODRAFT_257986 [Schizophyllum commune H4-8]
gi|300103045|gb|EFI94452.1| hypothetical protein SCHCODRAFT_257986 [Schizophyllum commune H4-8]
Length = 687
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 186/340 (54%), Gaps = 55/340 (16%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVST-------------------SS 45
FS L + DL+DFI PSQ C+ + + D Q +T +
Sbjct: 3 FSGALTLTDLNDFITPSQACIKPVTETNKPEKDASQAATEIHIDSTGAYYEVSSATETTQ 62
Query: 46 KQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG--------KAVIISLS 97
++ E +I+L DCLACSGCITSAE+V++ QS E L+ ++ + ++S++
Sbjct: 63 GRKLEQAQINLNDCLACSGCITSAESVLITLQSHIEVLAFVDANPPPGQSGHRIPVMSIA 122
Query: 98 PQSRASLAEHFGIS---PLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARY 153
PQ ASL+ + P Q+ +++ +F +S +G +++FDT+ +R L L E +A +
Sbjct: 123 PQVLASLSASVSSTTVSPRQMLRRVRSFCRSNMGFEAVFDTTFARHLAL----RETVAEW 178
Query: 154 KQSQESDDERSN-----SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
KQ + D R LPM++SACPGWICYAEK + +LPYIS KSPQQ +G +
Sbjct: 179 KQRR--DAARGGKVDGIDPLPMIASACPGWICYAEKTH-AEMLPYISKTKSPQQIMGTLV 235
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K I ++ G PD+IYH+ VMPCYDKKLEA+R+DFV E R EVD V+
Sbjct: 236 KQWIGERCGAHPDDIYHLAVMPCYDKKLEASRQDFVAA--HPHEAVR-------EVDCVI 286
Query: 269 TTGEVLDLIQLKAVNFEAL---EESPLDKMLTNVDDEGHL 305
T GE +++ + + A E++PL ++++ HL
Sbjct: 287 TAGEFEGMLRSRGWDPAAAVPDEDAPLAAEPALLEEDRHL 326
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 380 RKCDYQFVEVMACPSGCLNGGGQIKP 405
R Y +VEVMACP GC+NGGGQIKP
Sbjct: 560 RDRPYDYVEVMACPGGCVNGGGQIKP 585
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 311 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE------VEGKTLLKFALC 364
SSG Y + H + V LE + RN DF E + + G+ L K A C
Sbjct: 423 SSGSYLHAIVSHIMQENPSGV---QLELRKGRNDDFVEYIIRRPAESSMLGEVLFKGAKC 479
Query: 365 YGFQNLQNIVRKV 377
YGF+NLQN+VRKV
Sbjct: 480 YGFRNLQNLVRKV 492
>gi|260892206|ref|YP_003238303.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
gi|260864347|gb|ACX51453.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
Length = 549
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 26/415 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C+ C C + T + E+ ++ L + + K V++ +P R +L E FG+ P V
Sbjct: 118 CINCGQCSLACPTGAIQERDDTEKVLKALKDPNKFVVVQTAPSIRVALGEEFGMPPGTWV 177
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG ++ DT+ + DLT++E E I R K E LP +S
Sbjct: 178 AGKMVAALRRLGFNAVLDTNFAADLTIMEEATELIKRIK------GELPGRPLPQFTSCS 231
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E ++P++SS KSPQQ GAT+K + +K G P +I V++MPC KK
Sbjct: 232 PGWVKFCE-YFYPDLIPHLSSCKSPQQMFGATVKTYYAEKRGIDPRKIVSVSIMPCTAKK 290
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPE-----VDSVLTTGEVLDLIQLKAVNFEALEES 290
EA R + + S ++ + + +I E VD VLTT E+ LI+ ++F L +
Sbjct: 291 FEAQRPEMI----SAKKYWEKKDPKIAEGVTRDVDIVLTTRELAKLIKQAKIDFPRLPDE 346
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFRE 348
D ++ ++ G+SGG E R A + GK + L+ K +R + +E
Sbjct: 347 DFDPLMGKCTGGAIIF---GASGGVMEAAIRTAYFFITGKEPPQQLLDLKPVRGLASVKE 403
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
A+++ G ++ A+C G + ++ V+ K + FVE MACP GC +GGGQ +
Sbjct: 404 AAVDIPGAGTIRVAVCQGMAASRQVLDIVRAGKAPWHFVEFMACPGGCESGGGQPRSSVP 463
Query: 409 QSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q+ + K ++Y + + + +NP + +Y ++ P SE A++ +HT Y
Sbjct: 464 QANEVRAKRTASLYAADARWVWRESHENPDILKVYQDFYGHPMSELAEELLHTHY 518
>gi|375086547|ref|ZP_09732953.1| hydrogenase, Fe-only [Megamonas funiformis YIT 11815]
gi|374564686|gb|EHR35968.1| hydrogenase, Fe-only [Megamonas funiformis YIT 11815]
Length = 580
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/410 (32%), Positives = 207/410 (50%), Gaps = 37/410 (9%)
Query: 59 CLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C C + ++EK D L I + K VI+ +P R +L + FG+ +
Sbjct: 192 CVLCGQCSLACPVGALVEKDDTDRVLDAIFDPNKTVIVQTAPSVRIALGDEFGMPKGSIV 251
Query: 117 -KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ T L+ +G +FDT+ DLT+ E NE I R K S +PM +S C
Sbjct: 252 TKKMVTALRMIGFDKVFDTNYGADLTITEEANELIERIK---------SGKKMPMATSCC 302
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ Y EK +L ++S+ KSP Q A K H ++ P I+ V +MPC KK
Sbjct: 303 PGWVNYMEKHYPD-LLDHLSTTKSPMQIFSAITKTHYAKQENLDPKNIFTVAIMPCIAKK 361
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D + P+ D+VLTT E++ LI+ ++FE L ES D
Sbjct: 362 YEITRPEMAH--DGR-----------PDTDAVLTTRELIKLIKYIGIDFENLPESEFDNP 408
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ ++G ++GG E R + L G+ ++ ++E+ +R D +E + +
Sbjct: 409 MGTATGAAAIFG---ATGGVMEAALRTTYEWLTGEEMK-NVEYTPVRGFDGIKEAQINIG 464
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
KT+ A+ + N + ++ K++ +C Y F+EVMACP GCL GGGQ G + +
Sbjct: 465 DKTI-NIAVAHTLNNAKILMDKLRAGECKYDFIEVMACPGGCLGGGGQ---PIGTTMEVN 520
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K +E+IY +N +NP ++ LY ++LE+PGSE A K +HT Y
Sbjct: 521 KKRMESIYQIDKNTKYRKSHENPYLKQLYKDFLEKPGSEIAHKLLHTHYQ 570
>gi|160624920|gb|ABO42543.2| hydrogenase [Clostridium butyricum]
Length = 574
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 198/414 (47%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGIS-P 112
+CL C C+ + L EK +D E L + NK VI++++P R S+ E F +
Sbjct: 189 NCLLCGQCVAACPVAALNEKPHIDRVKEALEDPNK--HVIVAMAPAVRTSMGELFKMGYG 246
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V KL + L+ LG +FD + D+T++E EFI R +N PM +
Sbjct: 247 VDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATEFIERI---------NNNGPFPMFT 297
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CP W+ AE +L +SS KSPQQ GA K + G P +Y VT+MPC
Sbjct: 298 SCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAASKTYYPTVEGLDPKSVYTVTIMPCT 356
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA R + +EGL +D+VLTT E+ +I+ +NF ALE+
Sbjct: 357 AKKYEADRTEM-----------ENEGLR--NIDAVLTTRELAKMIKDAKINFAALEDEKA 403
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D + G ++G ++GG E R A + K + +E+K +R D +E +
Sbjct: 404 DPAMGEYTGAGVIFG---ATGGVMEAALRSAKDFVEDKDLT-DIEYKQVRGLDGIKEATV 459
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
E+ GK A+ G NL V +M + Y FVEVM+CP GC+NGGGQ
Sbjct: 460 EIGGKNY-NVAVINGSANLTKFVEGGQMDEKQYHFVEVMSCPGGCVNGGGQPHVAAKDRD 518
Query: 412 KELIKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L N + KN + +Y+E++ PG KA + +H +Y
Sbjct: 519 TANVRAVRASVLYNQDKTAVKRKSHKNEALMKMYNEYMGMPGQHKAHELLHLKY 572
>gi|392395414|ref|YP_006432016.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526492|gb|AFM02223.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
Length = 527
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 204/412 (49%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E++ D+ L ++ V++ +P +R L E FG+ V
Sbjct: 115 CIHCGQCIHWCPSGAISEREDSDKVLKALSDPNITVVVQTAPATRIGLGEEFGMPVGTNV 174
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG IFDT+ + DLT++E +E + R + LP L+S C
Sbjct: 175 QGKQVAALRELGFDVIFDTNFTADLTIMEEGSELVKRITGEL-------HHPLPQLTSCC 227
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E ++P +SS KSPQQ GA +K + +K P ++ V +MPC KK
Sbjct: 228 PGWVKFVE-YFYPDLIPNLSSAKSPQQMEGALVKTYFAEKNTIDPKTVFSVAIMPCTAKK 286
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + + +TY + P+VD VLTT E+ +I+ ++F +L + D++
Sbjct: 287 FECQRPEMI-----SAQTYLKDKHVSPDVDVVLTTRELARMIKRAGIDFPSLPDEEYDQL 341
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A + G+ L + +R + +E ++ +
Sbjct: 342 MGIGTGAGAIF---GTTGGVMEAAVRSAYYLITGQQPPSALWQLAPVRGMEGVKEASVPI 398
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + I+ +V+ + F+EVMACP GC GGGQ P+ P +
Sbjct: 399 PGAGDVKIAVISGLDNARKIMEQVRAGNSPWAFIEVMACPGGCQYGGGQ--PRSSAPPSD 456
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L N L + NP ++ +Y+++L P SEKA++ +HT Y
Sbjct: 457 GVRNTRAASLYKIDANAKLRNSHDNPQIKQVYEDFLTSPLSEKAEELLHTHY 508
>gi|150018922|ref|YP_001311176.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149905387|gb|ABR36220.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 567
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 211/411 (51%), Gaps = 43/411 (10%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
DC+ C C T T ++ K + I N + VI ++P R +L E FGI P +
Sbjct: 188 DCVNCGQCATVCPTGAIVVKSDIKNVWKAIYNHKQRVIAQVAPAVRVALGEEFGIKPGEN 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG ++I+DTS S DLT+IE EF+ + ESDD + P+ +S
Sbjct: 248 VMGKIVAAMRKLGFENIYDTSLSADLTVIEESKEFLKKL----ESDDNK----FPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ Y E + + +LPY+SS KSP + G+ +K + +K E V VMPC K
Sbjct: 300 CPAWVRYVENKY-TELLPYVSSCKSPMEMFGSVVKAYFKEKDSLENRETISVAVMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+F+ RD IP+VD V+TT E+ +I+ + F+ +E D
Sbjct: 359 KAEAAREEFI----------RD---NIPDVDYVITTAELCAMIKEIGIQFDEIEAEASDI 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L+ G ++GV +GG E V R K +V++ +EF +R + L+V
Sbjct: 406 PLSLYSGAGVIFGV---TGGVTEAVIREVVKDKSSRVLK-DIEFIGVRGMKGVKTCELQV 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---IKPKPGQS 410
+ ++ ++ + G +N ++++ K+K + + F+EVMACP GC+ G GQ + + +
Sbjct: 462 KDES-IRIGIVSGLRNAEDLIEKIKSGEEHFDFIEVMACPGGCIAGAGQPFGLMEEKNER 520
Query: 411 PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L K + ++ +N +V+SLY+ L+ + K+ +H Y
Sbjct: 521 AKGLYKIDKVTQIKR-----SEENLVVKSLYEGLLKN----RTKELLHVHY 562
>gi|115525856|ref|YP_782767.1| hydrogenase, Fe-only [Rhodopseudomonas palustris BisA53]
gi|115519803|gb|ABJ07787.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53]
Length = 619
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 199/411 (48%), Gaps = 37/411 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C++C C+ T L E+ D L I + ++ +P R + E FG+ + V
Sbjct: 213 CVSCGQCVLVCPTGALGERDETDRALDYICDPNLVTVVQFAPAVRVAFGEEFGMPAGTNV 272
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ + +G+ + DT+ + D+ ++E E ++R KQ + P +S C
Sbjct: 273 EGQVIAACRKIGIDVVLDTNFAADVVIMEEGAELLSRLKQGRR----------PTFTSCC 322
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI +AE ILP +SS KSPQQ + K ++ +KLG D I +++MPC KK
Sbjct: 323 PAWINFAEINYPE-ILPLLSSTKSPQQVLSTLAKTYLPEKLGIPADRIRVISIMPCIAKK 381
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK- 294
EA R D Q PE D VLTT E L++ + ++ + +E S D
Sbjct: 382 DEAVRPQLSH--DGQ-----------PETDVVLTTREFARLLRREGIDLKTIERSNFDTP 428
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
++ G ++G ++GG E R + G+ +E +E +R + RE +++
Sbjct: 429 FMSGYSGAGAIFG---TTGGVMEAALRTIYAIVNGRELE-RIELTQLRGFERLREATVDL 484
Query: 354 EGKTL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G +K A+ +G + + +V V K DY F+EVMACP GC++GGG ++ K P
Sbjct: 485 GGAVGEVKVAMVHGLGDTRALVEAVLAGKADYDFIEVMACPGGCVDGGGSLRSKKAYLPL 544
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K ETIY + NP V++LY E LE P SEKA +HT Y
Sbjct: 545 AL-KRRETIYNVDRTAKVRQSHNNPQVQALYRELLEAPNSEKAHHLLHTHY 594
>gi|357040965|ref|ZP_09102747.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
gi|355355824|gb|EHG03627.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
Length = 672
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 216/432 (50%), Gaps = 42/432 (9%)
Query: 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIIS 95
K QV+T+ ++ V DC+ C CIT T L +S E + + ++ K V+
Sbjct: 174 KTQVTTAFGKELSEV-----DCINCGQCITVCPTGALTAKSEVEQAWKAILDPSKTVVFQ 228
Query: 96 LSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
++P R +L E FG+S V K+ LK LG +FDT + DLT IE EFI+R +
Sbjct: 229 IAPAVRVALGEEFGLSAGSAVTGKVVAALKKLGADKVFDTLFAADLTTIEESMEFISRLE 288
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+ + LP+ +S CP W+ Y E Q + +L ISS +SPQQ G+ +K H Q
Sbjct: 289 KGDK---------LPLFTSCCPAWVKYCE-QAHADLLANISSCRSPQQMFGSLVKKHYAQ 338
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
+G P E+ V+VMPC KK EA R +F + +VD VLTT E+
Sbjct: 339 VIGKEPGEVVCVSVMPCTAKKFEATRPEFTTG-------------GVRDVDIVLTTVELA 385
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
+I+ + F LE + D L + G L + G+SGG E+V R + G I G
Sbjct: 386 QMIKEAGIVFNELEPAGFDNPL-GMGSGGAL--IFGASGGVMESVVRFVSGYTSGAEI-G 441
Query: 335 HLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
++F +R +E +EV G+ LK A+ G N + +V+++K + Y VEVMACP
Sbjct: 442 RIDFYPVRGMQGLKEAEVEVNGQK-LKLAVVNGIANAEKLVQRIKSGEAGYHAVEVMACP 500
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSE 451
GC+ GGGQ P+ + ++ L+TIY + M + N V + ++WL GS
Sbjct: 501 GGCIGGGGQ--PEVNDTAAR-VQRLKTIYNLDTMEQVHKAQDNIYVNHIINQWLNGTGSA 557
Query: 452 KAKKHVHTEYHP 463
+HT Y P
Sbjct: 558 TVHHELHTRYVP 569
>gi|338812002|ref|ZP_08624201.1| hydrogenase subunit [Acetonema longum DSM 6540]
gi|337275971|gb|EGO64409.1| hydrogenase subunit [Acetonema longum DSM 6540]
Length = 576
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 207/411 (50%), Gaps = 37/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C T ++E+ + E + + K V++ +P R +L E G+ Q+
Sbjct: 193 CTFCGQCAAVCPTGAIVERDNTAEVWKVLSDPQKHVVVQTAPAVRVALGEALGLDAGQIV 252
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT S DLT++E +EFI R + LPM++S
Sbjct: 253 TGKMVAALRRLGFDKVFDTDFSADLTIMEEGSEFIERLTK---------GGKLPMITSCS 303
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +L ++S+ KSPQQ GA +K + +K G P I V++MPC KK
Sbjct: 304 PGWVNFIELMYPD-LLEHLSTAKSPQQMFGALVKTYYAEKSGISPAGIVSVSIMPCTAKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + + ++D VD VLTT E+ +I+ ++F AL D
Sbjct: 363 AEAARTEM------KSNGHQD-------VDYVLTTRELGRMIREAGLDFNALPSEEYDAP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L G ++G ++GG E R A+T+ GK + +EF +R + RE + V
Sbjct: 410 LGISTGAGVIFG---ATGGVMEAALRTVAETVTGKALP-DIEFHNVRGLTGIREAVVPV- 464
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G + +K A+ + N + ++ K++ DY F+E+MACP GC+ GGGQ P + ++
Sbjct: 465 GDSKVKVAVAHTLGNARMLMEKIRAGVADYHFIEIMACPGGCIGGGGQPAPISQEVRQQR 524
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
I IY + + L +NP VR LYD WL +P EK+ K +HT YHP
Sbjct: 525 IN---AIYQCDQAMTLRKSHENPAVRELYDTWLGKPLGEKSHKLLHTHYHP 572
>gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 667
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 212/418 (50%), Gaps = 52/418 (12%)
Query: 53 KISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI- 110
K+ +C+ C C+ T L + +D+ I +GK VI ++P RASL E FG+
Sbjct: 181 KLENTECVFCGQCVAYCPTGALAIRNDVDKVYKAIEEGKYVIGMIAPAVRASLQEEFGME 240
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ + ++ + LK +G K +FD + + DL E +EF+ R + ++ LP
Sbjct: 241 DDIAMAGRMVSILKMIGFKKVFDVAFAADLVAYEEAHEFMERLENGEK---------LPQ 291
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ +AE+ Y LP +SSVKSPQ +GA IK + +++G P++I V++MP
Sbjct: 292 FTSCCPGWVKFAEQYYPEY-LPNLSSVKSPQMALGAIIKKYYAREIGVNPEDIVLVSIMP 350
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+F EG ++D VLTT E++ + + ++ + +E
Sbjct: 351 CTAKKFEAEREEF-------------EG----DIDIVLTTRELVKIFKATGIDIKMVEPE 393
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
D+ G + G +GG +V KVIE + K++ + RE+A
Sbjct: 394 SFDRPYGLSSQSGLSF---GKTGGVLGSVV---------KVIEDKVNVKSV---NTREIA 438
Query: 351 -------LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+E+E +++ +G N++ ++ +K + + VEVMAC GC+ GGGQ
Sbjct: 439 QGVNLTEVELENGKVVRGVAVFGLGNVRKVISDIKEGRLNADVVEVMACNYGCIGGGGQP 498
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P ++ K L+ +V+++ P +N +R LY ++ P S +A + +HTEY
Sbjct: 499 YPNDVRTRARRAKILKETQSVDVLIS-PTENFHMRELYTKYFGAPLSHEAHEVLHTEY 555
>gi|388853420|emb|CCF53040.1| related to NAR1-similarity to human nuclear prelamin A recognition
factor [Ustilago hordei]
Length = 847
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 158/516 (30%), Positives = 237/516 (45%), Gaps = 154/516 (29%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKA-------TFKNPDKPQVSTSSKQQA-------- 49
FS L + DL+D++ PSQ C+ ++ T + +T+S Q A
Sbjct: 3 FSGALTLTDLNDYLGPSQACIKPVEGTDAPTDHHTSSSDQIHSAATASTQIAIDRDGSYY 62
Query: 50 -------------------------EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLS 84
E +ISL DCLACSGC+TSAE+V++ QS +E
Sbjct: 63 ESTSASTSAAAAAASGSKPRERTKLETAQISLNDCLACSGCVTSAESVLITMQSQEELRR 122
Query: 85 NI------NKGKAVIISLSPQSRASLAEHF---------------------GIS--PLQV 115
+ + K ++ S+S QS ASL+ + G+S PL V
Sbjct: 123 AVAEIHSSTRPKLLVASISTQSLASLSAKYTFQQNQQQTSSSPSSSESNQAGLSTLPLPV 182
Query: 116 F-KKLTTFLKSL-GVKSIFDTSCSRDLTLIEACNEFIAR----YKQSQESDDERSNS--- 166
+++ FLK++ ++DT+ +R + L E EF R +K ++ ++D + S
Sbjct: 183 LLHRISYFLKTVFQFDHVYDTTFARHIALKEHEREFFQRRANSHKHAKLNNDAATRSHEP 242
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF--RPD--- 221
+LPML+SACPGWICYAEK LG +LPY+S+ KSPQQ G K + +LG RP
Sbjct: 243 TLPMLASACPGWICYAEKTLGE-LLPYVSTTKSPQQVAGVIAKRFLPHRLGLQTRPSSST 301
Query: 222 --------EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEV 273
IYH+TVMPCYDKKLEA+R DF D+ EVD VLTTGE+
Sbjct: 302 DDPASSQPNIYHLTVMPCYDKKLEASRPDFY-----------DDITNTKEVDCVLTTGEL 350
Query: 274 LDLIQLKAVNF------------EALEESPLDKMLTNVDDEGHLYGVA------------ 309
L+ + + ++L + L++ L E + VA
Sbjct: 351 DKLMLDQGFDLCAPVPGEQETMQQSLADLSLEQALGRGASEPNANTVAILPHFPELLDQP 410
Query: 310 -GSSGGYAETVFRHA------------AKTLFGKVIEGHLEFKTIRNSDFRE-------- 348
SSGGY + R +++ + + L+ + IR +DF E
Sbjct: 411 GSSSGGYLFNLMRAVWLDWISQHWHQFPESVRQRGLVPKLDVRVIRTADFTEFILRAPAQ 470
Query: 349 VALEVEGKT------LLKFALCYGFQNLQNIVRKVK 378
++L+V+ +T L + A CYGF+NLQN+VRK++
Sbjct: 471 LSLDVDPQTNLSWNILFRGAQCYGFRNLQNLVRKLQ 506
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 384 YQFVEVMACPSGCLNGGGQIKP 405
Y +VEVMACPSGC+NGGGQI+P
Sbjct: 608 YDYVEVMACPSGCVNGGGQIRP 629
>gi|358068217|ref|ZP_09154687.1| hypothetical protein HMPREF9333_01568 [Johnsonella ignava ATCC
51276]
gi|356693761|gb|EHI55432.1| hypothetical protein HMPREF9333_01568 [Johnsonella ignava ATCC
51276]
Length = 578
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 209/410 (50%), Gaps = 37/410 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
C C CI T + E + + I+ K VI+ +P R +L E FG+ P V
Sbjct: 194 CTFCGQCIAVCPTGALTEVDNTADVWDAISSDKTVIVQTAPAVRVALGEEFGMEPGTVVT 253
Query: 118 -KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ T LK++G ++DT+ + D+T++E +EF R+K + LP+L+S CP
Sbjct: 254 GKMVTALKNMGFDYVYDTNFAADVTIVEEASEFADRFK---------NGGRLPILTSCCP 304
Query: 177 GWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
WI + E I +P SS KSP + G+ K ++ +KLG +P++I V+VMPC KK
Sbjct: 305 SWIKFVEHNFKELIDIP--SSCKSPHEMFGSLAKSYLAEKLGKKPEDIVVVSVMPCVAKK 362
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + +S +VD V++T E+ +I +F L +S D+
Sbjct: 363 YEAQRPELGNSGNS-------------DVDIVISTRELARMIVDSTQDFVNLPDSSFDRF 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ G ++ GS+GG AE R A + L G+ ++ + F +R + +E + +
Sbjct: 410 MGQSTGAGTIF---GSTGGVAEATLRTAYEFLTGEELK-EVNFTALRGFEKIKETTVNI- 464
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G T + A+ G N + ++ V+ Y +E+MACP GC++GGGQ P + + L
Sbjct: 465 GGTQINVAVASGLGNARKLLNDVRDGIKQYHIIEIMACPGGCIDGGGQ--PYMHGNTEIL 522
Query: 415 IKTLETIY-LEN-VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K + +IY ++N + KNP V LY+E+L + EKA K +HT ++
Sbjct: 523 TKRMNSIYNIDNKKHIRQSHKNPEVLQLYNEYLGEFYGEKAHKLLHTHFY 572
>gi|403388946|ref|ZP_10931003.1| [Fe] hydrogenase [Clostridium sp. JC122]
Length = 566
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 211/411 (51%), Gaps = 47/411 (11%)
Query: 59 CLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-L 113
C C C+ T A T +++ + + + + K K V+ ++P R +L E FG+S +
Sbjct: 194 CTYCGQCVAVCPTGALTEVMDYEKIPRVVED--KEKFVVAQIAPAVRVALCEEFGVSSDI 251
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
K+ LK L +FDT+ S DLT++E EFI R+K+ + LP+++S
Sbjct: 252 ITTGKIVAALKMLNFNKVFDTNFSADLTIMEEAKEFINRFKEKNK---------LPLITS 302
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CP WI +AE L YISS KSPQQ GA K ++ K + + + V++MPC
Sbjct: 303 CCPAWIRFAEMNYKDN-LKYISSCKSPQQMFGAIAKSYLVDKYKIKKENMVVVSIMPCIA 361
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA R++ +G +VD V+TT E+ LI+ +++ L+E D
Sbjct: 362 KKYEAKRKEL-------------KG----DVDIVITTRELAKLIRESSIDIINLKEEEFD 404
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
L G L+ G+SGG E R A + K + L+FK +R D +E +E
Sbjct: 405 NPLGVSTGAGMLF---GTSGGVMEAALRTAYEWSCNKTL-NELDFKDVRGLDGIKEATIE 460
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++G ++ A+ +N + ++ ++K C Y F+E+MACP GC++GGGQ P +
Sbjct: 461 LDGNK-IEVAVISSLKNARKVMEEIKNGICKYDFIEIMACPGGCIDGGGQ--PYIKSCKE 517
Query: 413 ELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+L K ++ IY ++ + + +NP+++ LY ++L + + KK +H Y
Sbjct: 518 KLEKRMKIIYEKDKVSKIRKSHENPIIKELYKDFLNE---DNIKKLLHVTY 565
>gi|256002756|gb|ACU52623.1| hydrogenase [Clostridium beijerinckii]
Length = 567
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 209/411 (50%), Gaps = 43/411 (10%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
DC+ C C T T ++ K + I N + V+ ++P R +L E FGI P +
Sbjct: 188 DCVNCGQCATVCPTGAIVVKSDIKNVWKAIYNHKQRVVAQVAPAVRVALGEEFGIKPGEN 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG ++I+DTS S DLT+IE EF+ + ESDD + P+ +S
Sbjct: 248 VMGKIVAAMRKLGFENIYDTSLSADLTVIEESKEFLKKL----ESDDNK----FPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ Y E + +LPY+SS KSP + G+ +K + +K E V VMPC K
Sbjct: 300 CPAWVRYVENKYPE-LLPYVSSCKSPMEMFGSVVKAYFKEKDSLENRETISVAVMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+F+ + IP+VD V+TT E+ +I+ + F+ +E D
Sbjct: 359 KAEAAREEFIRE-------------NIPDVDYVITTAELCAMIKEIGIQFDEIEAEASDI 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L+ G ++GV +GG E V R K +V++ +EF +R + L+V
Sbjct: 406 PLSLYSGAGVIFGV---TGGVTEAVIREVIKDKSSRVLK-DIEFIGVRGMKGVKTCELQV 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---IKPKPGQS 410
+ ++ ++ + G +N +N++ K+K + + F+EVMACP GC+ G GQ + + +
Sbjct: 462 KDES-IRIGIVSGLRNAENLIEKIKSGEEHFDFIEVMACPGGCIAGAGQPFGLMEEKNER 520
Query: 411 PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L K + ++ +N +V+SLY+ L+ + K+ +H Y
Sbjct: 521 AKGLYKIDKVTQIKR-----SEENLVVKSLYEGLLKN----RTKELLHVHY 562
>gi|68464731|ref|XP_723443.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
gi|68465110|ref|XP_723254.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
gi|74587988|sp|Q5APK7.1|NAR1_CANAL RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|46445281|gb|EAL04550.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
gi|46445477|gb|EAL04745.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
Length = 609
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 159/523 (30%), Positives = 231/523 (44%), Gaps = 139/523 (26%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-------------------------VSLKKATFKNP--- 36
S L DL+DFI+P C+ V ++ + NP
Sbjct: 1 MSALLSADDLNDFISPGVACIKPLASSSTNTTTTTNTTDSYNENGEVEIQIDSQGNPLEI 60
Query: 37 ---DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL----SNINKG 89
D Q T+ + P +ISL DCLACSGCITSAE V++ + S E + S
Sbjct: 61 SKIDDKQFQTN---KLTPAQISLADCLACSGCITSAEEVLVAQHSHQELIKALQSQKETN 117
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNE 148
K ++S+S QSRASLA + +S + K L F++ +G I TS R L+LI E
Sbjct: 118 KVFVVSISHQSRASLAMAYNVSIENMDKCLIDLFIRQMGFTYIVGTSLGRKLSLINEAKE 177
Query: 149 FIAR-YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
I R K S + +SS P+LSS CPGW+ YAEK YI+P +S+VKSPQQ G
Sbjct: 178 IINRKTKGSGTGGIDSDSSSGPILSSICPGWVLYAEKT-HPYIIPKMSTVKSPQQITGCL 236
Query: 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-EIPEVDS 266
+K+ L +IYH+++MPC+DKKLE+AR + V++ + +EE +D+ L +P+VD
Sbjct: 237 LKNLTSNSLNIEKSKIYHLSIMPCFDKKLESARPE-VYEEEEEEEEEKDKALVSVPDVDC 295
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG------------------- 307
V+T E++ L LEE P +++ + L G
Sbjct: 296 VITAKELITL----------LEECPQYQLIPPTLPQEELIGGGCLSMTEIYKQYAPPNWP 345
Query: 308 ---------VAGSSGGYAETVFRHAAKTLFGKVIEGH---LEFKTIRNSDFREVALEVEG 355
+SGGYA L K +G+ + RN D E+ L G
Sbjct: 346 FIEISWSNDSGSASGGYAYNYLTIYRNDLILKGYDGNKFTINLINGRNPDIYEMRLMYNG 405
Query: 356 KT---LLKFALCYGFQNLQNIVRKVK---------------------------------- 378
+ L A+ GF+N+QN+VRK+K
Sbjct: 406 ENKEKLASAAVVNGFRNIQNLVRKLKPNTGKTTNTTTTTTKSKVNPLAARRRARMANNRG 465
Query: 379 ------MRKCDYQFVEVM------------ACPSGCLNGGGQI 403
+ + Q +E++ ACP+GC+NGGGQI
Sbjct: 466 KPETKSTSEVNSQEMEIVADASKVDYVEIMACPNGCINGGGQI 508
>gi|385306039|gb|EIF49976.1| nuclear architecture related protein [Dekkera bruxellensis
AWRI1499]
Length = 487
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 144/481 (29%), Positives = 223/481 (46%), Gaps = 107/481 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKP--QVSTSSKQQAEPV---------- 52
S L DL+DFI PS C+ +K + N + ++ + PV
Sbjct: 1 MSALLSADDLNDFITPSVACIKPVKGSNEGNEGEKGQKLEIEIDTEGXPVEVNKEGETRR 60
Query: 53 ----KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA---VIISLSPQSRASLA 105
+ISL DCLACSGCITS+E V++++ S EF+ + K K + S+S Q+RASL+
Sbjct: 61 LQRAQISLSDCLACSGCITSSEEVLMQQHSHKEFMKAMEKYKGQKIFVASISHQARASLS 120
Query: 106 EHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS 164
+S V + L F++ LG + T R ++L + C + I SQ+ D +
Sbjct: 121 NALHLSVADVDRVLIKLFVERLGFAKVVGTGLGRRISLKQMCQQVI---DASQKGDKDHK 177
Query: 165 NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
P+L+S CPGW+ Y EK ++LPY+ + KSPQQ G +K +L +P E+Y
Sbjct: 178 K---PILTSICPGWLMYVEK-THPFLLPYLDNTKSPQQITGLLLKRTTAAELHIKPKEVY 233
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
++VMPC+DKKLEAAR++ Q+D VD+V+T EVL L++ ++
Sbjct: 234 GLSVMPCFDKKLEAARQEXDEQVD---------------VDTVITPKEVLHLLEDLKIDL 278
Query: 285 EAL--------EESPLDKMLTNVDDEGHLYGV-------AGSSGGYAETVFRHAAKTLFG 329
+ L + L + LY V +SGGYA + + A +
Sbjct: 279 DQLIAEACADSSYADLGALYERFAPHNWLYPVESWTNDEGSASGGYA---YHYLATXMHR 335
Query: 330 KVIEGH-LEFKTI--RNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKVK------ 378
+ E + + RN D E+ L + + + A+ GF+N+QN+VRK+K
Sbjct: 336 QAAXADCFEIRKLEGRNPDIYELQLVNKXSEQVXARSAVVNGFRNIQNMVRKIKQSSQKG 395
Query: 379 ---------------MRK---------------------CDYQFVEVMACPSGCLNGGGQ 402
M+K + + +EVMACP+GC+NGGG
Sbjct: 396 PXTSGRGRAXLRRRRMQKGHTDPEHXSRDHEHAGQRVNLLECELIEVMACPNGCINGGGL 455
Query: 403 I 403
I
Sbjct: 456 I 456
>gi|14250935|emb|CAC39231.1| HymC protein [Eubacterium acidaminophilum DSM 3953]
Length = 578
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 214/415 (51%), Gaps = 43/415 (10%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C C+ L +++ E + + ++ K V++ ++P RA+L E FG +P+ +
Sbjct: 189 CIYCGQCVNVCPVAALREKTDIEKVWEVLEDETKHVVVQVAPAVRAALGEMFG-NPIGTR 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T LK LG + +FDT+ + DLT++E E + R K + +LPM++S
Sbjct: 248 VTGKMFTALKMLGFQKVFDTNFAADLTIMEEGTELLGRIK---------NGGTLPMITSC 298
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E +L ++SS KSPQQ +GA +K + +K P+ + V+VMPC K
Sbjct: 299 SPGWIRYVE-HFYPELLDHVSSCKSPQQMMGAVLKSYYAEKNNIAPENMIVVSVMPCIAK 357
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E+A+E+ RD VD VLTT E+ +I+ + F L++S D+
Sbjct: 358 KTESAKEEM-----KNVHGTRD-------VDIVLTTRELGKMIKEARIEFNDLQDSNPDE 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ ++ G++GG E R A + G+ +E +E+ +R + +E A+++
Sbjct: 406 FFGDYTGAAVIF---GATGGVMEAAIRTVADIVSGQELE-DIEYTAVRGLEGIKEAAVKI 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ +G N ++ V+ K DY F+E+M C GC+ GGGQ P KE
Sbjct: 462 -GDLEVKVAVAHGTANAGKLMDLVRDGKADYHFIEIMGCSGGCVTGGGQ--PHVDSRTKE 518
Query: 414 LIKT----LETIYLENVMLADPFK---NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + +Y E+ L D K N V+ LY+E+L +P KA + +HT Y
Sbjct: 519 KVNVKLERAKALYTED-KLRDKRKSHHNESVKRLYEEYLGKPNGHKAHELLHTHY 572
>gi|258513524|ref|YP_003189746.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
gi|257777229|gb|ACV61123.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
Length = 513
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 191/390 (48%), Gaps = 49/390 (12%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 145
+ GK V++ +P +R +L E FG+ P V + L+ LG IFDT+ + DLT++E
Sbjct: 143 DPGKVVVVQTAPATRVALGEEFGLEPGAWVMGQQVAALRRLGFDVIFDTNFTADLTIMEE 202
Query: 146 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP----YISSVKSPQ 201
E I R K + LP +S CPGWI + E Y P +S+ KSPQ
Sbjct: 203 ATELIRRVKGDLKK-------PLPQFTSCCPGWIKFCE-----YFYPDLFLNLSTCKSPQ 250
Query: 202 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 261
Q +GA +K + ++ G P I+ V +MPC KK EA R + ++ YRD
Sbjct: 251 QMLGALVKTYFAKEKGLNPKNIFSVAIMPCTAKKFEANRSEM------KDSGYRD----- 299
Query: 262 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 321
VDSVLTT E+ L++ ++ L D ++ ++G G V
Sbjct: 300 --VDSVLTTRELSRLLKKHNIDLTKLPAENYDPLMGKSTGGAVIFGATGG-------VME 350
Query: 322 HAAKTLFGKVIE-----GHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVR 375
A +T + + + G L+ +R + +E A+E+ G ++ A+C+G N + I+
Sbjct: 351 AAVRTAYFFITQSPPPSGLLQLTPVRGLAGVKEAAVEIPGVGRIRVAVCHGMGNAREILE 410
Query: 376 KVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADP 431
+ + FVE M CP GC +GGGQ P+ P + I+ L N +++ +
Sbjct: 411 ATRKGNAPWHFVEFMCCPGGCQSGGGQ--PRTAVPPSDEIRLKRIASLYNADAKMVMRES 468
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+NP + ++Y ++LE P SE A++ +HTEY
Sbjct: 469 HENPDILTIYQKFLEHPMSELAERLLHTEY 498
>gi|325291003|ref|YP_004267184.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Syntrophobotulus glycolicus DSM 8271]
gi|324966404|gb|ADY57183.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Syntrophobotulus glycolicus DSM 8271]
Length = 577
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 215/437 (49%), Gaps = 52/437 (11%)
Query: 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISL 96
PQ S ++ + K++ ++C+ C CI L E+ D + + N V++
Sbjct: 173 PQTSVTTPYEE---KLTARNCINCGQCIKVCPVGALSERDDTDLVWAALENSELNVVVQT 229
Query: 97 SPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
+P R +L E FG+ P+ V K+ T LK LG +FDT+ S DLT++E E I+R
Sbjct: 230 APAVRIALGEEFGL-PVGTDVEGKMVTALKKLGFDKVFDTNFSADLTIMEEGTELISRIN 288
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+ LP+++S PGWI + E + + L +SS KSPQQ GA K + +
Sbjct: 289 ---------NGGKLPLITSCSPGWIKFCEHKYPDF-LDNLSSCKSPQQMFGAVAKSYYPE 338
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
K G P +++ V+VMPC KK EA RE+ V E+ ++D +TT E+
Sbjct: 339 KAGIDPKKVFVVSVMPCTAKKYEADREELVVD-------------ELKDIDVAITTRELA 385
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKV 331
+I+ + F L +S D M+ G G A ++GG E R A L G+
Sbjct: 386 KMIKQAGIQFTDLADSKADSMM------GEGTGAAVIFANTGGVMEAAIRTVADILTGED 439
Query: 332 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
++ +++ +R + +E ++ + G LK A+ ++ K++ + Y F+E+M
Sbjct: 440 LK-DIDYIAVRGQEGIKEASVNI-GDLELKVAVANSTGAASKLLDKIRAGESTYHFIEIM 497
Query: 391 ACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLADP----FKNPLVRSLYDEW 444
C GC+NGGGQ I K S E +K L T + N +P KN ++ LY E+
Sbjct: 498 GCAGGCINGGGQPIIMDK---SKTEEVKQLRTAGIYNKDKNNPKRKSHKNEEIQKLYAEY 554
Query: 445 LEQPGSEKAKKHVHTEY 461
L++PGS KA +HT Y
Sbjct: 555 LDKPGSHKAHHILHTHY 571
>gi|406876161|gb|EKD25809.1| hypothetical protein ACD_79C01496G0001 [uncultured bacterium]
Length = 573
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 211/413 (51%), Gaps = 33/413 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQS-LDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS 111
+++ C+ C CI T L +QS + + ++ +N K V + +P +L E F +
Sbjct: 184 MNVSSCIYCGQCIKVCPTGALREQSSIKDVINALNDPEKIVTVQHAPAVSVTLGEEFNMD 243
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P L T L+ L +FDTS S DLT++E +E + R K +N LPM
Sbjct: 244 PGADTAGVLVTALRRLKFDWVFDTSFSADLTIMEEASELVHRIK---------NNGKLPM 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S PGWI + E Q + +S+ KSPQQ +GA +K + K P +I++V++MP
Sbjct: 295 LTSCSPGWIKFVE-QFYPEFMDNLSTCKSPQQMMGAVVKSYFAGKNKIDPKKIFNVSIMP 353
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E+ R + + G++ +VD+VLTT E++ +I+++ ++ L
Sbjct: 354 CTAKKFESDRPEM-----------GNNGIQ--DVDAVLTTRELVRMIRMRGIDLNKLNPD 400
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D G L+ G SGG E R A L G+ ++ +L+ + +R D F++
Sbjct: 401 IADNPFGERSSAGKLF---GGSGGVMEAALRTAYNMLTGRNLD-NLKIEPLRGLDSFKQT 456
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ + G + A+ G +N + ++ ++K + D F+EVM CP GC+ GGGQ
Sbjct: 457 TVNINGLD-VGVAVVSGLKNARKLLDEIKAGRNDLHFIEVMTCPGGCVAGGGQPGGIEVD 515
Query: 410 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ K+ +K L TI + + +NP ++ LY E+L +P S K+ + +HT Y+
Sbjct: 516 AIKKRLKGLYTIDSGDKIRCS-HENPSIQMLYKEFLHEPLSHKSHELLHTHYN 567
>gi|403388213|ref|ZP_10930270.1| hydrogenase, Fe-only [Clostridium sp. JC122]
Length = 460
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/457 (31%), Positives = 212/457 (46%), Gaps = 80/457 (17%)
Query: 49 AEPVKISLKDCLACSGCI--------------TSAETVMLEKQSLDEFLSNI-------- 86
EP I+ C+ C CI S E + E++ LD I
Sbjct: 33 GEPQSINTDKCVLCGQCIQTCSVYASEFQEEIASKEEKLKERKMLDTVTEPIFAAYSLGQ 92
Query: 87 ---------NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSC 136
+K I+ +P R +LAE FG+ + KL LK L ++DT+
Sbjct: 93 VIEVKEKLKDKNLYKIVQCAPAVRVALAEEFGMEFGALTPGKLAKALKVLNFDRVYDTNF 152
Query: 137 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 196
+ DLT++E +E I R + +LPM +S CP W+ +AE +L ++SS
Sbjct: 153 AADLTIMEEGSELIERVT---------TGKNLPMFTSCCPAWVKFAEDTYPE-LLNHLSS 202
Query: 197 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 256
KSPQQ G K + + P +IY V VMPC K+ E RE+ YRD
Sbjct: 203 CKSPQQMAGVLFKTYGAKIDKVEPSKIYSVAVMPCTCKQFECDREEM------NSSGYRD 256
Query: 257 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA 316
VD V+TT E+ LI+ ++F LEE D L G+++G ++GG
Sbjct: 257 -------VDCVITTRELAHLIKESGIDFANLEEDTFDTPLGTYSGAGNIFG---ATGGVM 306
Query: 317 ETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVR 375
E R + + K I LE IR S+ R ++V+G L K A+ G +++ ++
Sbjct: 307 EAAIRTGYELISKKSIP-KLELNFIRGSEGIRTATVDVDGLEL-KVAVVSGLKHVSKVME 364
Query: 376 KVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI---------KTLETIYLENV 426
VK+ KCDY FVEVM CP GC++GGGQ PK L+ K E++Y +
Sbjct: 365 DVKLGKCDYHFVEVMTCPDGCVSGGGQ--------PKLLLEEYRQVAYKKRKESLYNHDS 416
Query: 427 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +NP ++ +YDE+LE+P K+ + +HT+Y
Sbjct: 417 ALKIRKSHENPDIKKIYDEFLEKPLGHKSHELLHTKY 453
>gi|300853895|ref|YP_003778879.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
gi|300434010|gb|ADK13777.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
Length = 462
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 213/452 (47%), Gaps = 66/452 (14%)
Query: 47 QQAEPVKISLKDCLACSGCI--------------TSAETVMLEKQSLDE----FLSNINK 88
+Q +P KI+ + C+ C CI T + ++ L E + NK
Sbjct: 33 EQGKPQKINTEKCVMCGQCIQVCKGYQSVYDDVPTPVSKRLFDRGLLKEVDEPLFAAYNK 92
Query: 89 GKAV-------------IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFD 133
G+A I+ +P R ++ E FG+ PL K+ L+ LG ++D
Sbjct: 93 GQAKSVKEILQNKDVFKIVQCAPAVRVAIGEDFGM-PLGTLSEGKMAAALRKLGFDKVYD 151
Query: 134 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 193
T+ DLT++E +E + R + LPM +S CP W+ YAE Q +LP+
Sbjct: 152 TNFGADLTIMEEGSELLKRVAEG---------GVLPMFTSCCPAWVKYAE-QTYPELLPH 201
Query: 194 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 253
+SS KSP Q GA K + + P +IY+V+VMPC K+ E+ RE+ +
Sbjct: 202 LSSCKSPNQMAGAIFKTYGAEINKVNPAKIYNVSVMPCTCKEFESEREEM------HDSG 255
Query: 254 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 313
+RD VD+V+TT E+ L + ++F +EE D L G ++G ++G
Sbjct: 256 HRD-------VDAVITTRELAQLFKDADIDFNTIEEEQFDTPLGMYTGAGTIFG---ATG 305
Query: 314 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQN 372
G E R + K I ++ +R + FR +++ G LK + G +N+++
Sbjct: 306 GVMEAALRTGYELYTKKTIP-SIDLTMVRGGEGFRTAEVDL-GDIRLKVGVVSGLKNVKD 363
Query: 373 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE---NVMLA 429
++ VK KCD F+EVM CP GC++GGGQ K +E + N+
Sbjct: 364 VMESVKAGKCDLHFIEVMTCPQGCISGGGQPKVILDSDKEEAYNNRKKGLYNHDANLTYR 423
Query: 430 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+NP ++ +YDE+L++P K+ + +HT+Y
Sbjct: 424 KSHENPEIKKIYDEFLDKPLGAKSHELLHTKY 455
>gi|217076874|ref|YP_002334590.1| hydrogenase-1 [Thermosipho africanus TCF52B]
gi|217036727|gb|ACJ75249.1| hydrogenase-1 [Thermosipho africanus TCF52B]
Length = 658
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 205/420 (48%), Gaps = 54/420 (12%)
Query: 53 KISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI- 110
++S +C+ C C+ T L + L + +GK +I ++P RAS+ E G+
Sbjct: 180 ELSTTNCVLCGQCVAHCPTGALTFRNDLQNVYKAMEEGKYIIGMMAPAVRASIQEELGME 239
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V ++ FLKS+G K +FD + + DL E +EF R ++ ++ LP
Sbjct: 240 DDVVVAGRIVNFLKSIGFKKVFDVAFAADLVAYEEAHEFKERLEKGEK---------LPQ 290
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ +AE Y L +S+VKSPQQ +G+ IK +++G P++IY V++MP
Sbjct: 291 FTSCCPGWVKFAEHNYPEY-LNNLSTVKSPQQALGSIIKKFYAKEIGVNPEDIYLVSIMP 349
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+ V EVD+V+TT E+ LI+ N + +
Sbjct: 350 CTAKKFEAEREELV-----------------GEVDAVITTRELSQLIRSSGFNLKNVPPV 392
Query: 291 PLDKMLTNVDDEGHLYGVAGSSG---GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFR 347
P D+ YG++ SG G VF KV+E +EF I+ +
Sbjct: 393 PFDRP----------YGLSSQSGLSFGKTGGVFGSVL-----KVLESEIEFDDIKTEEI- 436
Query: 348 EVALEVEGKT-----LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
E + V T ++ + +G N + ++ +K K VEVMAC GC+ GGGQ
Sbjct: 437 EKGIRVTKATTKDGKVISGVVVFGLGNTRKVIDSIKNGKLKVDIVEVMACDYGCIGGGGQ 496
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P + + K L + +V+++ P +N + SLY+ +LE+P S + + +HT Y
Sbjct: 497 PYPNDARVRTKRAKILNEVVGIDVLIS-PNENYHMLSLYERYLEKPLSHVSHEVLHTTYR 555
>gi|373120537|ref|ZP_09534593.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
gi|371657337|gb|EHO22639.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
Length = 584
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 202/413 (48%), Gaps = 37/413 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
DC++C CI + T L EK L+ +N K V++ +P R +L E FG+ P+
Sbjct: 192 DCVSCGQCIVACPTGALSEKDDTARVLAALNDPAKHVVVGPAPSIRVTLGECFGL-PIGT 250
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ T L+ LG +FD + D T++E EF++R +LP+++S
Sbjct: 251 NVEGKMVTALRRLGFDKVFDVDTAADFTILEEGTEFLSRLN---------GGGTLPLITS 301
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGW+ Y E Q ++ ISS KSPQQ G+ +K + ++ G P +I+ V++MPC
Sbjct: 302 CSPGWVRYLE-QHAPDMIRNISSCKSPQQMFGSLVKTYYAEQAGMDPQDIFVVSIMPCTA 360
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ R +P VD LTT E+ +I + FE L + D
Sbjct: 361 KKYEVLREE-----------QRLPNGCMP-VDVSLTTRELGRMITQAGLLFEHLPDGAFD 408
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
ML ++ G+SGG E R + L G+ + LE++ +R + +E + E
Sbjct: 409 PMLGVSTGAAAIF---GASGGVMEAALRTVVEQLTGEGM-APLEYQEVRGMEGVKEASYE 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+ GKT ++ + G N++ ++ ++ Y FVE MACP GC+NGGGQ
Sbjct: 465 LPGKT-VRVCVASGLHNVKRVLDGIRDGSLQYDFVEFMACPGGCINGGGQPIQHANVRNF 523
Query: 413 ELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK L L E + +NP+V+ +Y ++L +PG KA +H Y
Sbjct: 524 TDIKALRAAALYKQDEGMTYRRSHENPVVQKVYADFLGEPGGHKAHALLHCSY 576
>gi|338729902|ref|YP_004659294.1| hydrogenase, Fe-only [Thermotoga thermarum DSM 5069]
gi|335364253|gb|AEH50198.1| hydrogenase, Fe-only [Thermotoga thermarum DSM 5069]
Length = 583
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 210/411 (51%), Gaps = 39/411 (9%)
Query: 58 DCLACSGC-ITSAETVMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV 115
DC+AC C + + E + + L + K K +I+ +P +R +L E FG+ P +
Sbjct: 189 DCIACGQCSVFCPVGAITENSQVRKVLEELEKHDKVLIVQTAPATRVALGEEFGLEPGSI 248
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ L+ LG +FDT+ + DLT++E +EF+ R K + PM +S
Sbjct: 249 STGKMVAALRRLGFDYVFDTNFAADLTIMEEGSEFLERLK---------NGGPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP WI EK +I P +SS KSP Q +GA +K + +K+ P I+ V++MPC K
Sbjct: 300 CPAWINMMEKLYPQFI-PNVSSAKSPHQMLGAVVKTYFAKKINVDPKNIFLVSIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K + R + +P VD VLTT E+ LI++K + F L + D
Sbjct: 359 KDDIIRPQHMIN-------------GVPAVDVVLTTRELAKLIKIKKIPFATLPDENYDD 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++GV +GG E R A + GK + G +EF+++R + +E ++
Sbjct: 406 PLGESTGAGAIFGV---TGGVMEAALRTAYELGLGKPL-GKIEFESVRGLEGIKEATIDF 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
GK LK A+ +G N++ ++ K+ + Y FVE+MAC GC+ GGGQ P K+
Sbjct: 462 NGKK-LKVAVAHGGLNVRRLLDKIVAGEVYYDFVEIMACSGGCIGGGGQ----PKSLDKD 516
Query: 414 -LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L+K ++ IY E ++ +NP ++ LY E+LE P S A + +HT Y
Sbjct: 517 VLVKRMKAIYTIDELSVIRKSHENPSIKKLYQEFLEHPLSHVAHETLHTTY 567
>gi|414153988|ref|ZP_11410309.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454520|emb|CCO08213.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 518
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 220/431 (51%), Gaps = 30/431 (6%)
Query: 51 PVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ +D+ + + +K V++ +P +R +L E F
Sbjct: 105 PIKNDIT-CVNCGQCTLWCPTAAITERDDIDKVVQALADKNIHVVVQTAPATRVALGEEF 163
Query: 109 GISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G++P V K LK LG ++FDT+ S DLT+ E E I R + +
Sbjct: 164 GMAPGTFVEGKQVAALKKLGFDAVFDTNFSADLTIFEEGTELIKRITG-------QIHEP 216
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +L ++S+ KSPQQ +GA IK + ++ G P++I+ V+
Sbjct: 217 LPQFTSCSPGWVKFCEYYYPD-LLSHMSTCKSPQQMLGALIKTYYAKEKGINPEKIFSVS 275
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK EAAR + + Y + ++ +VD VLTT E+ LI+ K ++ +L
Sbjct: 276 IMPCTAKKFEAARPEM-----NSAGKYNGKP-QMRDVDVVLTTRELARLIKSKGIDLNSL 329
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
+ D ++ G ++ G++GG E R A + + E L IR
Sbjct: 330 SDEKYDSLMGESSGAGLIF---GATGGVMEAAIRSAYFLITKQEPPEALLNLTPIRGLKG 386
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
+E A+++ G +K A+ +G N + I+ V+ ++ + F+E M CP GC++GGGQ P
Sbjct: 387 CKEAAVDIPGVGTIKVAVVHGLSNARPILEAVRKKEAPWHFIEFMCCPGGCISGGGQ--P 444
Query: 406 KPGQSPKELIK--TLETIYLENVML---ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+ P + ++ + +IY + + +N V +LY+++LE P S A + +HT
Sbjct: 445 RTSLPPSDQVRQARINSIYNADAHIYVKRKSHENKEVLALYEKFLENPNSHLAHELLHTH 504
Query: 461 YHPVVKSITAQ 471
Y K++T +
Sbjct: 505 YTDRSKTLTVK 515
>gi|335427597|ref|ZP_08554526.1| hydrogenase, Fe-only [Haloplasma contractile SSD-17B]
gi|334894591|gb|EGM32777.1| hydrogenase, Fe-only [Haloplasma contractile SSD-17B]
Length = 584
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 207/413 (50%), Gaps = 39/413 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + L EK +D IN + K V+ +P RA+L E FG+ +V
Sbjct: 191 CIYCGQCINACPVSALKEKPEIDRVWDAINDEKKYVVFQTAPAVRAALGEEFGMEIGNRV 250
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT+ + DLT++E NE + R K +LP+++S
Sbjct: 251 TGKMVAALRRLGGNKVFDTNFAADLTIMEEANELLDRIKNG---------GTLPLITSCS 301
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ E +I P +S+ KSP Q +GA K + +K+G P +Y V+VMPC KK
Sbjct: 302 PGWVRILENYYPEFI-PNLSTCKSPHQMLGAVTKSYYAEKIGVNPKNMYVVSVMPCIAKK 360
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE+ E I ++D+V+TT E+ +I+ ++F L D
Sbjct: 361 FEKDREEM-------------EVNGIRDIDAVITTRELAKMIKEAGIDFNKLPNEEYDTA 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L G ++ G++GG E R AA L GK +E E+ +R + +E +L +
Sbjct: 408 LGIYSGAGVIF---GATGGVMEAALRTAADVLEGKDLE-TFEYTGVRGVENIKEASLTLG 463
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKPGQSPK 412
G A+ +G + ++ VK + +Y F+E+M C GC+NGGGQ + K S
Sbjct: 464 GNE-YNIAVVHGGNAAKQLLEMVKNGEKNYHFIEIMGCTGGCVNGGGQPHVHSKIKNSGI 522
Query: 413 ELIKTL--ETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++TL + +Y E+ + + +N ++ LY ++L +P S K+ + +HT Y
Sbjct: 523 D-VRTLRAKALYEEDQLCTVRKSHQNKAIQELYRDFLGEPNSHKSHELLHTHY 574
>gi|365844590|ref|ZP_09385427.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
gi|364564250|gb|EHM42022.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
Length = 584
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 201/413 (48%), Gaps = 37/413 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
DC++C CI + T L EK L+ +N K V++ +P R +L E FG+ P+
Sbjct: 192 DCVSCGQCIVACPTGALSEKDDTARVLAALNDPAKHVVVGPAPSIRVTLGECFGL-PIGT 250
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ T L+ LG +FD + D T++E EF++R +LP+++S
Sbjct: 251 NVEGKMVTALRRLGFDKVFDVDTAADFTILEEGTEFLSRLN---------GGGTLPLITS 301
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGW+ Y E Q ++ ISS KSPQQ G+ +K + ++ G P +I+ V++MPC
Sbjct: 302 CSPGWVRYLE-QHAPDMIRNISSCKSPQQMFGSLVKTYYAEQAGIDPQDIFVVSIMPCTA 360
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ R +P VD LTT E+ +I + FE L + D
Sbjct: 361 KKYEVLREE-----------QRLPNGCMP-VDVSLTTRELGRMITQAGLLFEHLPDGAFD 408
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
ML ++ G+SGG E R + L G + LE++ +R + +E + E
Sbjct: 409 PMLGVSTGAAAIF---GASGGVMEAALRTVVEQLTGAGM-APLEYQEVRGMEGVKEASYE 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+ GKT ++ + G N++ ++ ++ Y FVE MACP GC+NGGGQ
Sbjct: 465 LPGKT-VRVCVASGLHNVKRVLDGIRDGSLQYDFVEFMACPGGCINGGGQPIQHANVRNF 523
Query: 413 ELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK L L E + +NP+V+ +Y ++L +PG KA +H Y
Sbjct: 524 TDIKALRAAALYKQDEGMTYRRSHENPVVQKVYADFLGEPGGHKAHALLHCSY 576
>gi|419759368|ref|ZP_14285669.1| hydrogenase-1 [Thermosipho africanus H17ap60334]
gi|407515581|gb|EKF50319.1| hydrogenase-1 [Thermosipho africanus H17ap60334]
Length = 658
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 203/419 (48%), Gaps = 52/419 (12%)
Query: 53 KISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI- 110
++S +C+ C C+ T L + L + +GK +I ++P RAS+ E G+
Sbjct: 180 ELSTTNCVLCGQCVAHCPTGALTFRNDLQNVYKAMEEGKYIIGMMAPAVRASIQEELGME 239
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V ++ FLKS+G K +FD + + DL E +EF R ++ ++ LP
Sbjct: 240 DDVVVAGRIVNFLKSIGFKKVFDVAFAADLVAYEEAHEFKERLEKGEK---------LPQ 290
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ +AE Y L +S+VKSPQQ +G+ IK +++G P++IY V++MP
Sbjct: 291 FTSCCPGWVKFAEHNYPEY-LNNLSTVKSPQQALGSIIKKFYAKEIGVNPEDIYLVSIMP 349
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+ V EVD+V+TT E+ LI+ N + +
Sbjct: 350 CTAKKFEAEREELV-----------------GEVDAVITTRELSQLIRSSGFNLKNVPPM 392
Query: 291 PLDKMLTNVDDEGHLYGVAGSSG---GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-- 345
P D+ YG++ SG G VF KV+E +EF I+ +
Sbjct: 393 PFDRP----------YGLSSQSGLSFGKTGGVFGSVL-----KVLESEIEFDDIKTEEIE 437
Query: 346 --FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
R + ++ + +G N + ++ +K K VEVMAC GC+ GGGQ
Sbjct: 438 KGIRLTKATTKDGKVISGVVVFGLGNTRKVIDSIKNGKLKVDIVEVMACDYGCIGGGGQP 497
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P + + K L + +V+++ P +N + SLY+ +LE+P S + + +HT Y
Sbjct: 498 YPNDARVRTKRAKILNEVVGIDVLIS-PNENYHMLSLYERYLEKPLSHVSHEVLHTTYR 555
>gi|164612837|gb|ABY63664.1| [FeFe] hydrogenase [Clostridium butyricum]
Length = 574
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 197/414 (47%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGIS-P 112
+CL C C+ + L EK +D E L + NK VI++++P R S+ E F +
Sbjct: 189 NCLLCGQCVAACPVAALNEKPHIDRVKEALEDPNK--HVIVAMAPAVRTSMGELFKMGYG 246
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V KL + L+ LG +FD + D+T++E EFI R +N PM +
Sbjct: 247 VDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATEFIERI---------NNNGPFPMFT 297
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CP W+ AE +L +SS KSPQQ GA K + G P +Y VT+MPC
Sbjct: 298 SCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAASKTYYPTVEGLDPKSVYTVTIMPCT 356
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA R + +EGL +D+VLTT E+ +I+ +NF LE+
Sbjct: 357 AKKYEADRTEM-----------ENEGLR--NIDAVLTTRELAKMIKDAKINFATLEDEKA 403
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D + G ++G ++GG E R A + K + +E+K +R D +E +
Sbjct: 404 DPAMGEYTGAGVIFG---ATGGVMEAALRTAKDFVEDKDLI-DIEYKQVRGLDGIKEATV 459
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
E+ GK A+ G NL V +M + Y FVEVM+CP GC+NGGGQ
Sbjct: 460 EIGGKNY-NVAVINGSANLTKFVEGGQMDEKQYHFVEVMSCPGGCVNGGGQPHVAAKDRD 518
Query: 412 KELIKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L N + KN + +Y+E++ PG KA + +H +Y
Sbjct: 519 TANVRAVRASVLYNQDKTAIKRKSHKNEALMKMYNEYMGMPGQHKAHELLHLKY 572
>gi|359744034|gb|AEV57473.1| [FeFe]-hydrogenase [Clostridium butyricum]
Length = 574
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 197/414 (47%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGIS-P 112
+CL C C+ + L EK +D E L + NK VI++++P R S+ E F +
Sbjct: 189 NCLLCGQCVAACPVAALNEKPHIDRVKEALEDPNK--HVIVAMAPAVRTSMGELFKMGYG 246
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V KL + L+ LG +FD + D+T++E EFI R +N PM +
Sbjct: 247 VDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATEFIERI---------NNNGPFPMFT 297
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CP W+ AE +L +SS KSPQQ GA K + G P +Y VT+MPC
Sbjct: 298 SCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAASKTYYPTVEGLDPKSVYTVTIMPCT 356
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA R + +EGL +D+VLTT E+ +I+ +NF ALE+
Sbjct: 357 AKKYEADRTEM-----------ENEGLR--NIDAVLTTRELAKMIKDAKINFAALEDEKS 403
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D + G ++G +SGG E FR + K + +E+ +R D +E +
Sbjct: 404 DPSMGEYTGAGVIFG---ASGGVMEAAFRSVKDFVEDKDLS-DIEYTQVRGLDGIKEATV 459
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
E+ GK A+ G NL V +M + Y FVEVM+CP GC+NGGGQ
Sbjct: 460 EIGGKNF-NVAVINGSDNLTKFVEGGQMDEKQYHFVEVMSCPGGCVNGGGQPHVAAKDRD 518
Query: 412 KELIKTLETIYLEN---VMLADPF-KNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L N + F KN + +Y E++ PG KA + +H +Y
Sbjct: 519 TANVRAVRASVLYNQDKTAVKRKFHKNQALIKMYHEYMGMPGQHKAHELLHLKY 572
>gi|2245000|emb|CAB10420.1| LET1 like protein [Arabidopsis thaliana]
gi|7268394|emb|CAB78686.1| LET1 like protein [Arabidopsis thaliana]
Length = 578
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/178 (58%), Positives = 120/178 (67%), Gaps = 25/178 (14%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLK--KATFKNPDKPQVSTSSKQQAEPVKISLKD 58
MSEKFSPTLR+GDL+DFIAPSQ CV+SLK K K D+PQV + KQQ EPVKISLKD
Sbjct: 275 MSEKFSPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQQLEPVKISLKD 334
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKK 118
CLACSGCITSAETVMLEKQSLDEFLS ++KGK + H PL+
Sbjct: 335 CLACSGCITSAETVMLEKQSLDEFLSALSKGKTWLCPFL---------HSRELPLRF--T 383
Query: 119 LTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
+T+ L SRDL LIE+CNEF++RYKQ+ D E S S LP+LSSACP
Sbjct: 384 MTSLL------------FSRDLVLIESCNEFVSRYKQANSDDGENSQSPLPVLSSACP 429
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 111/181 (61%), Gaps = 51/181 (28%)
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
LTNV +EG LYGVAGSSGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L+++
Sbjct: 448 LTNVTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQIKP 507
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
KT GQS KELI
Sbjct: 508 KT--------------------------------------------------GQSQKELI 517
Query: 416 KTLETIYLENVML-ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHN 474
+LE Y+ + L DP++NP + L++EWL++PGS +AKK++HT+YHPVVKS+T+QL+N
Sbjct: 518 HSLEATYMNDTTLNTDPYQNPTAKRLFEEWLKEPGSNEAKKYLHTQYHPVVKSVTSQLNN 577
Query: 475 W 475
W
Sbjct: 578 W 578
>gi|187932889|ref|YP_001884306.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B]
gi|187721042|gb|ACD22263.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B]
Length = 576
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 200/412 (48%), Gaps = 34/412 (8%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C CI + L ++S E + N + K VI++++P RA++ E F + +
Sbjct: 190 NCLLCGQCIAACPVDALSEKSHTERVQNALEDPSKHVIVAMAPSVRAAMGEAFKMGYGVD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E I+R + PM +S
Sbjct: 250 VTGKIYTALRMLGFNKIFDINFGADMTIMEEATELISRVNKG---------GPFPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ E +I +SS KSPQQ GA K + + G P +++ VT+MPC K
Sbjct: 301 CPSWVREVENYFPEFI-DNLSSAKSPQQIFGAASKTYYPEIEGLDPKDVFTVTIMPCTSK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ + GL +D+V+TT E+ +I+ +NF LE+S D
Sbjct: 360 KFEADREEM-----------ENNGLR--NIDAVITTRELAKMIKTAKINFATLEDSEADP 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++G ++GG E R A + K +E +E++ +R D + A
Sbjct: 407 SMGEYTGAGAIFG---ATGGVMEAALRSAKDFIENKSLE-EIEYEQVRGLDGIKEATVTL 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G A+ G N+ + V+ +M + Y F+EVM+CP GC+NGGGQ K
Sbjct: 463 GGQEYNIAVINGAANVFDFVKSGRMEEKQYHFIEVMSCPGGCVNGGGQPHVNSKDRSKID 522
Query: 415 IKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
I+T+ L N ++ +N + +Y+ ++ +PG A + +H +Y+
Sbjct: 523 IRTVRASVLYNQDKGLVKRKSHENVSLLKMYETYMGKPGKGLAHELLHIKYN 574
>gi|182419999|ref|ZP_02951233.1| hydrogenase-1 [Clostridium butyricum 5521]
gi|237669483|ref|ZP_04529463.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262]
gi|149384911|gb|ABR25256.1| hydrogenase [Clostridium butyricum]
gi|182376036|gb|EDT73623.1| hydrogenase-1 [Clostridium butyricum 5521]
gi|188530086|gb|ACD62594.1| FeFe hydrogenase [Clostridium butyricum]
gi|237654927|gb|EEP52487.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 574
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 197/414 (47%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGIS-P 112
+CL C C+ + L EK +D E L + NK VI++++P R S+ E F +
Sbjct: 189 NCLLCGQCVAACPVAALNEKPHIDRVKEALEDPNK--HVIVAMAPAVRTSMGELFKMGYG 246
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V KL + L+ LG +FD + D+T++E EFI R +N PM +
Sbjct: 247 VDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATEFIERI---------NNNGPFPMFT 297
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CP W+ AE +L +SS KSPQQ GA K + G P +Y VT+MPC
Sbjct: 298 SCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAASKTYYPTVEGLDPKSVYTVTIMPCT 356
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA R + +EGL +D+VLTT E+ +I+ +NF LE+
Sbjct: 357 AKKYEADRTEM-----------ENEGLR--NIDAVLTTRELAKMIKDAKINFATLEDEKA 403
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D + G ++G ++GG E R A + K + +E+K +R D +E +
Sbjct: 404 DPAMGEYTGAGVIFG---ATGGVMEAALRTAKDFVEDKDLI-DIEYKQVRGLDGIKEATV 459
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
E+ GK A+ G NL V +M + Y FVEVM+CP GC+NGGGQ
Sbjct: 460 EIGGKNY-NVAVINGSANLTKFVEGGQMDEKQYHFVEVMSCPGGCVNGGGQPHVAAKDRD 518
Query: 412 KELIKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + L N + KN + +Y+E++ PG KA + +H +Y
Sbjct: 519 TANVRAVRASVLYNQDKTAVKRKSHKNEALMKMYNEYMGMPGQHKAHELLHLKY 572
>gi|367013987|ref|XP_003681493.1| hypothetical protein TDEL_0E00390 [Torulaspora delbrueckii]
gi|359749154|emb|CCE92282.1| hypothetical protein TDEL_0E00390 [Torulaspora delbrueckii]
Length = 476
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 145/490 (29%), Positives = 231/490 (47%), Gaps = 74/490 (15%)
Query: 13 DLSDFIAPSQNCV--VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAE 70
DL+DFI+P CV +KK + + +V + + E V ISL+DCLAC+GCITS+E
Sbjct: 9 DLNDFISPGLACVKPTEVKKVNEEQTTEIEVGKEASE-LEKVSISLQDCLACAGCITSSE 67
Query: 71 TVMLEKQSLDEFLS---NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-L 126
++L +QS F+ N+ + + +S+SPQSR SLA+++G++ + L K
Sbjct: 68 EILLSRQSHTVFVEAWKNLRDERQLAVSISPQSRISLADYYGLTLETLDLTLLNLFKVYF 127
Query: 127 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 186
G + T R+LT+ + E I+ +Q + + P LS+ CPG++ YAEK
Sbjct: 128 GCRYFVGTQMGRNLTISRSNQELISLKQQGELAKK-------PKLSAVCPGFVLYAEKT- 179
Query: 187 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 246
++PY+ +VKSPQQ G+ +K +KL YH+++MPC+DKKLEA+R D
Sbjct: 180 KPELVPYLLNVKSPQQITGSLLKMSSNEKL-------YHLSIMPCFDKKLEASRPDGE-- 230
Query: 247 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPLDKMLTNVDDEGH 304
EVD V+T EV+ ++Q ++ E+ L K L+ + +
Sbjct: 231 ---------------KEVDCVITPREVVTMLQELQIDINQYKSEDQALRKALSPLGWDPI 275
Query: 305 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE--VEGKTLLKFA 362
L+ + +++ + ++ E L+ +NSD RE L G+T+
Sbjct: 276 LHWSSNEGSSSGGFAYQYILE-MYHLYPESALQVLEGKNSDLREYRLTDLANGQTIASAT 334
Query: 363 LCYGFQNLQNIVRKVKMRK---------------------------CDYQFVEVMACPSG 395
YGF+N+QN+VRK+ R + F+EVMACP G
Sbjct: 335 ELYGFRNIQNMVRKLTQRSIRPRNPRLLKNRQATSSASTKPAIADPTNTDFIEVMACPGG 394
Query: 396 CLNGGGQI-KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
C+NGGG + K S ++ I N N R++ E + S
Sbjct: 395 CINGGGLLSKDSASNSTSNAVRKKAIIDHLNARYTQEMVNIDARTMGQEIDHRSTSHTLS 454
Query: 455 KHVHTEYHPV 464
H E+HP+
Sbjct: 455 --YHYEFHPI 462
>gi|251778554|ref|ZP_04821474.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243082869|gb|EES48759.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 576
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 199/411 (48%), Gaps = 34/411 (8%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ + L ++S E + N + K VI++++P RA++ E F + +
Sbjct: 190 NCLLCGQCVAACPVDALSEKSHTERVQNALEDPNKHVIVAMAPSVRAAMGEAFKMGYGVD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E I+R + PM +S
Sbjct: 250 VTGKIYTALRMLGFNKIFDINFGADMTIMEEATELISRVNEG---------GPFPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ E +I +SS KSPQQ GA K + + G P +++ VT+MPC K
Sbjct: 301 CPSWVREVENYFPEFI-DNLSSAKSPQQIFGAASKTYYPEIEGLDPKDVFTVTIMPCTSK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ + GL +D+V+TT E+ +I+ +NF LE+S D
Sbjct: 360 KFEADREEM-----------ENNGLR--NIDAVITTRELAKMIKTAKINFSTLEDSEADP 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++G ++GG E R A + K +E +E++ +R + + A
Sbjct: 407 SMGEYTGAGAIFG---ATGGVMEAALRSAKDFIENKSLE-EIEYEQVRGLEGIKEATVTL 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G A+ G N+ + V+ V+M + Y F+EVM+CP GC+NGGGQ K
Sbjct: 463 GGQEYNIAVINGAANVFDFVKSVRMEEKQYHFIEVMSCPGGCVNGGGQPHVNSKDRSKID 522
Query: 415 IKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+T+ L N + +N + +Y+ ++ +PG A + +H +Y
Sbjct: 523 IRTVRASVLYNQDKGLSKRKSHENASLLKMYETYMGKPGKGLAHELLHIKY 573
>gi|217077862|ref|YP_002335580.1| hydrogenase [Thermosipho africanus TCF52B]
gi|217037717|gb|ACJ76239.1| hydrogenase [Thermosipho africanus TCF52B]
Length = 583
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 208/411 (50%), Gaps = 33/411 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQ 114
+C++C C + E + L ++K K ++ +P R ++ E FG+ P
Sbjct: 187 NCISCGQCAYLCPVGAIYETPDWRKVLKILDKKDNKILVAQTAPSVRVAIGEEFGMEPGS 246
Query: 115 VFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ ++ LG +FDT+ + DLT++E E I R K PM +S
Sbjct: 247 VSTGKMVAAIRKLGFDYVFDTNFAADLTIMEEGTELIGRIKDG---------GPFPMFTS 297
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGWI EK+ +I SS KSPQQ + + +K + +K+G P++I V++MPC
Sbjct: 298 CCPGWINLLEKEYPEFI-NNASSAKSPQQMMSSIVKTYFAKKIGVDPEDIIMVSIMPCTA 356
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E R Q++ ++G EI D V+TT E+ LI++K +NF L++ D
Sbjct: 357 KKDEITR--------PQQKIKLEDGREIKTTDYVITTRELAKLIKMKQINFIGLDDEDFD 408
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
L G ++GV +GG E R A + + K + LEF +R D RE ++
Sbjct: 409 NPLGTSTGAGAIFGV---TGGVMEAALRTAYEIITNKKLP-KLEFNAVRGLDGIREAEID 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+EGK L K A+ +G N++ ++ ++ Y F+E+MACP GC+ GGGQ K P
Sbjct: 465 IEGKKL-KVAIAHGTANVKKLLDDIRDGVRYYDFIEIMACPGGCIGGGGQPK---SLDPD 520
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K IY E L +NP ++ LY+E+LE+P S A + +HT Y
Sbjct: 521 ILKKRASAIYSIDELSTLRRSHENPDIQKLYEEFLEKPNSHIAHELLHTYY 571
>gi|392425996|ref|YP_006466990.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
gi|391355959|gb|AFM41658.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
Length = 521
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 206/421 (48%), Gaps = 30/421 (7%)
Query: 53 KISLKD---CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEH 107
++ LKD C+ C C + + E+ D+ I N V++ +P +R L E
Sbjct: 104 ELPLKDEIVCVNCGQCTQWCPSGAISERDDTDKVYKAIANSNIKVVVQTAPATRIGLGEE 163
Query: 108 FGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNS 166
FG+ V K L+ LG +FDT+ + DLT++E E + R K +
Sbjct: 164 FGLPVGTNVQGKQVAALRKLGFDVVFDTNFTADLTIMEEGTELVKRIKGELKK------- 216
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHV 226
LP L+S CPGW+ + E ++P +SS KSPQQ G +K + +K P +I V
Sbjct: 217 PLPQLTSCCPGWVKFVEYYYPD-LIPNLSSAKSPQQMEGTLMKTYYAEKKNVDPKKIVSV 275
Query: 227 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA 286
+MPC KK E R +L S + D+ + P+VD VLTT E+ +I+ ++F +
Sbjct: 276 AIMPCTAKKFECQRP----ELASAGKELNDKNVS-PDVDVVLTTRELARMIKRAGIDFSS 330
Query: 287 LEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-S 344
L + DK++ + G ++G ++GG E R A + G+ L + +R
Sbjct: 331 LPDGQYDKLMGSGTGAGAIFG---TTGGVMEAAARSAYYLVTGQQPPSALWDLTPVRGMQ 387
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
+E + + G +K A+ G N + ++ +++ + F+EVMACP GC GGGQ
Sbjct: 388 GVKEAEINIPGVGNMKVAVISGLANARKVMDQIQAGNATWDFIEVMACPGGCEYGGGQ-- 445
Query: 405 PKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
P+ P + ++ L N + + ++NP ++ +Y ++L P SEKA++ +HT
Sbjct: 446 PRAAAPPSDDVRNRRAASLYKIDANAKIRNSYENPEIKQIYADFLTSPMSEKAEELLHTT 505
Query: 461 Y 461
Y
Sbjct: 506 Y 506
>gi|71415644|ref|XP_809882.1| hydrogenase [Trypanosoma cruzi strain CL Brener]
gi|70874330|gb|EAN88031.1| hydrogenase, putative [Trypanosoma cruzi]
Length = 474
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 218/440 (49%), Gaps = 64/440 (14%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA-----EPVKISL 56
+ FS +L + + D+IAPS+ C + P + Q S Q E VKI+L
Sbjct: 3 TSNFSASLMLAGM-DYIAPSEACTL---------PTRLQRGADSSVQRHASGNEVVKITL 52
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFL----SNINKGKAVIISLSPQSRASLAEHFGISP 112
+DCLACSGC+T+AET+++ QS E + S+++ + ++++S QS AS+A H +
Sbjct: 53 QDCLACSGCVTTAETILVTSQSRAEIIKVCASDLD--RPFLVTISDQSAASIAAHLKVDS 110
Query: 113 LQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
+ F ++ F ++ L + + D ++ +++ + E+ R + +++ LPM+
Sbjct: 111 RRAFHIISGFFRTVLKSQYVSDLRWAQHISVEKTAQEYCHRLQHARD--------KLPMI 162
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
SACPGW+CY EKQ GS ILP + V SPQ G K Q + H++V PC
Sbjct: 163 VSACPGWVCYCEKQ-GSAILPLLCPVMSPQGIAGCYAKRVFPQ--------LCHISVQPC 213
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
+D+KLEAAR+ +D E D VL+T E+++ + + E+P
Sbjct: 214 FDRKLEAARDT---SIDGNERY----------TDFVLSTQELMEWMMETDASIP--WEAP 258
Query: 292 LDKMLTNV------DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 345
L+ ++ + L SGGY ++ A+ + F ++ +
Sbjct: 259 LNSSFESLSAPSLKESSSVLAATMEGSGGYHRFAMQYVAENVHNLSFSPVDIFYEMKRNA 318
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---DYQFVEVMACPSGCLNGGGQ 402
VA + + + YGFQ++QNIVR +K + Y F+E+MACP GCLNGGGQ
Sbjct: 319 NHHVATSPSNPGEV-YCVAYGFQHIQNIVRGLKRKLASVSSYTFIELMACPDGCLNGGGQ 377
Query: 403 IKPKPGQSPKELIKTLETIY 422
++ S E I ++ I+
Sbjct: 378 VRSGNLTSNLETIAAVKAIF 397
>gi|357037998|ref|ZP_09099797.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
gi|355360554|gb|EHG08312.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
Length = 523
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 202/414 (48%), Gaps = 32/414 (7%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C+ C C T + E+ + L I + K V++ +P +R +L E FG+ P V
Sbjct: 119 CINCGQCALWCPTAAITERDDTQKVLQAIQDPNKHVVVQTAPATRVALGEEFGLPPGTWV 178
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ LK LG +FDTS + DLT++E E I R +N LP +S
Sbjct: 179 AGQQVAALKRLGFDGVFDTSFTADLTIMEEATELIKRITGG-------TNMPLPQFTSCS 231
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +LP++SS KSPQQ +GA +K + + P+ I+ V++MPC KK
Sbjct: 232 PGWVKFCEY-FYPDLLPHMSSCKSPQQMLGALVKTYYAKAKNIAPENIFSVSIMPCTAKK 290
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + ++S + EGL ++D+VLTT E+ +I+ + ++ L E D +
Sbjct: 291 FEMQRPE----MNSSAHYWHQEGLR--DIDAVLTTRELARMIKQQNIDLNKLPEQNYDPL 344
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH-----LEFKTIRN-SDFREV 349
+ ++G G V A +T + + E L +R +E
Sbjct: 345 MGESTGGAIIFGATGG-------VMEAAVRTAYYFITEQQPPANLLTLTPVRGLEGVKEA 397
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
A++V G +K A+C+G N + ++ V+ + FVE M CP GC++GGGQ +
Sbjct: 398 AVDVPGVGTVKVAVCHGMSNGRQVLEAVRKGNAPWHFVEFMCCPGGCISGGGQPRSAVPP 457
Query: 410 SPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
S + ++ + ++Y + + +N V +LY +L+ P SE A++ +HT+Y
Sbjct: 458 SDEVRMQRINSLYQADARAQRRESHENAEVLALYQNFLKHPMSELAEELLHTKY 511
>gi|154496519|ref|ZP_02035215.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC
29799]
gi|150274152|gb|EDN01243.1| hydrogenase, Fe-only [Pseudoflavonifractor capillosus ATCC 29799]
Length = 449
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 211/410 (51%), Gaps = 26/410 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C C + + E+ + + + K V++S SP RASL E FG++P V
Sbjct: 48 CIYCGQCANACPVDSITERDECPQVRQAVADPNKVVVVSTSPAVRASLGEEFGMAPGAFV 107
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L++LG + DT+ + DLT++E +E + R Q + LP +S C
Sbjct: 108 EGKMVALLRALGADYVLDTNFAADLTIVEEASELLRRLTQG--------DQPLPQFTSCC 159
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ +AE +LP++S+ KSP G T+K + QK+G P +I HV + PC KK
Sbjct: 160 PGWVHFAEI-YAPELLPHLSTAKSPIGMQGPTVKTYFAQKMGLDPRQIVHVALTPCTAKK 218
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE ++ + + + EG+ + D ++TT E+ + + V++ ALE+SP D +
Sbjct: 219 FEIRRE----EMHAAADYHGVEGMR--DTDQIITTRELARWAKAEGVDWTALEDSPYDSL 272
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH-LEFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A L G+ L+ +R + RE +++
Sbjct: 273 MGKASGAGVIF---GNTGGVMEAALRTAYAYLTGQPAPASLLQLSPVRGYEGVREAQVDL 329
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G++ L A+ YG N + + ++K Y FVEVMACP GC+ GGGQ K + +
Sbjct: 330 GGQS-LNVAVIYGTANARGFLERMKADGKQYHFVEVMACPGGCIGGGGQPKDIMKDADET 388
Query: 414 LIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +Y + + L +NP ++++Y+E+ P SE A+K +HT Y
Sbjct: 389 RKSRIAALYQRDGAMSLRTSHENPEIKAVYEEFYGHPLSEMAEKMLHTAY 438
>gi|367008086|ref|XP_003688772.1| hypothetical protein TPHA_0P01810 [Tetrapisispora phaffii CBS 4417]
gi|357527082|emb|CCE66338.1| hypothetical protein TPHA_0P01810 [Tetrapisispora phaffii CBS 4417]
Length = 493
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 226/484 (46%), Gaps = 98/484 (20%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA------EPVKISLKD 58
S L DL+DFI+PS C+ K T N + V + Q E V I+L+D
Sbjct: 1 MSALLSAEDLNDFISPSMACI----KPTEVNKENDNVDANGDLQVGKESELEKVSITLQD 56
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
CLAC GCITS+E ++L +QS FL N N G ++IS+SPQSR S+A HFG+S ++
Sbjct: 57 CLACVGCITSSEEILLSRQSYSVFLENYKNDGGQLVISISPQSRLSMANHFGLSVMEFDI 116
Query: 118 KLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
++ ++ K + T R++++ E E + S + S P L S CP
Sbjct: 117 RMCQVVREKFACKYVVGTQIGREISIRETNREVREAVRAGTSSSSQVSG---PRLCSVCP 173
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
G++ Y EK ++PY+ +KSPQQ G IK+ + K +YH++VMPC+DKKL
Sbjct: 174 GFVLYCEKS-KPELVPYLVDIKSPQQLTGQIIKNTVGGK-------VYHLSVMPCFDKKL 225
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP----- 291
EA+R+D EG EVD V+T E + +++ + + +P
Sbjct: 226 EASRQD-------------SEG----EVDCVITPKEFVKMLEELDCDMGSNPATPATPTF 268
Query: 292 -LDK-MLTNVDDEGHLY------GVAGSSGGYA-----ETVFRHAAKTLFGKVIEGHLEF 338
LD+ +L + G+ + SSGG+A E+ RH A V+
Sbjct: 269 GLDRAILDEMSMPGYPWDATMSVNAGSSSGGFAYQYVLESQARHQAMGTRCAVLS----- 323
Query: 339 KTIRNSDFREVALE--VEGKTLLKFALCYGFQNLQNIVR-----------KVKMRKCDYQ 385
+N D E L G TL + YGF+N+QN+VR +++ R+ Q
Sbjct: 324 TAGKNHDLLEHRLVDLGSGATLASSSEVYGFRNIQNMVRRLTQAARPRTLRLRARQRAKQ 383
Query: 386 ---------------------FVEVMACPSGCLNGGGQIKPKPGQSPK-ELIKTLETIYL 423
F+EVMACP GC+NGGG + + +LI+ L Y
Sbjct: 384 SPDSDPALPAPPAAADPYGAEFIEVMACPKGCINGGGLLDSNNTKKMNAQLIEHLNQRYH 443
Query: 424 ENVM 427
E ++
Sbjct: 444 EELL 447
>gi|338811687|ref|ZP_08623892.1| Fe-Fe hydrogenase 2 [Acetonema longum DSM 6540]
gi|337276224|gb|EGO64656.1| Fe-Fe hydrogenase 2 [Acetonema longum DSM 6540]
Length = 461
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 217/460 (47%), Gaps = 70/460 (15%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGC--ITSA------ETVMLEKQSLDE----------F 82
V ++ +P IS + C+ C C I SA E + +Q L E
Sbjct: 26 VDAIEGEKGQPHTISRERCIVCGQCVQICSAYASIFDEEIAPREQKLAERGLLPSVREPL 85
Query: 83 LSNINKGKAV-------------IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLG 127
+ N+G A I+ +P R ++AE FG+ PL K+ LK+ G
Sbjct: 86 FAAYNRGDAPRVKAALADPGLFKIVQCAPAVRVAIAEEFGL-PLGSLTPGKMAAALKTAG 144
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
I+DT+ + DLT++E +E + R Q +PM +S CP W+ Y E
Sbjct: 145 FDRIYDTNFAADLTIMEESSELVQRLTQ---------GGRMPMFTSCCPAWVKYVEDTY- 194
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
++P++SS KSPQQ GA K + P +Y ++VMPC KK E R +
Sbjct: 195 PELIPHLSSCKSPQQMAGALFKTFGAKLDEVEPARVYSLSVMPCTCKKFECERPEMA--- 251
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 307
Y D VD+VLTT E+ L++ ++F+ L E+ DK L G ++G
Sbjct: 252 ---ASGYHD-------VDAVLTTRELAQLLKDAGIDFDKLTEAEFDKPLGTYTGAGAIFG 301
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 366
V +GG E R A + + G+ + L+F T+R + R+ A+++ G LK + G
Sbjct: 302 V---TGGVMEAALRTAYEWVTGQSLP-ELDFTTVRGGEGVRKAAVKL-GDLELKVVVVAG 356
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYL 423
++++ ++ +VK K D+ F+EVM CP GC++GGGQ PK PG P +IY
Sbjct: 357 LKHVRELLEQVKAGKADFHFIEVMTCPVGCVSGGGQ--PKVLIPGDKPAAYAGRKGSIYN 414
Query: 424 ENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L+ NP ++ LY+ +L +P ++ +HT Y
Sbjct: 415 HDAALSLRKSHDNPEIQKLYEAFLGKPLGSESHHLLHTHY 454
>gi|343960252|dbj|BAK63980.1| nuclear prelamin A recognition factor-like [Pan troglodytes]
Length = 346
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 25/235 (10%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCV--VSLKKATFKNPDKPQV----------STSSKQQ 48
M+ FS L++ DL DFI PSQ C+ V ++K K ++ ++
Sbjct: 1 MASPFSGALQLTDLDDFIGPSQECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRR 60
Query: 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEF--------LSNINKGKAVIISLSPQS 100
E K+SL DCLACSGCITSAETV++ +QS +E ++ ++ + V++S+SPQS
Sbjct: 61 LEKAKVSLNDCLACSGCITSAETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQS 120
Query: 101 RASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
RASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF+ R++ +
Sbjct: 121 RASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADC- 179
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK 215
+LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K Q+
Sbjct: 180 ----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDFFAQQ 230
>gi|337286723|ref|YP_004626196.1| hydrogenase, Fe-only [Thermodesulfatator indicus DSM 15286]
gi|335359551|gb|AEH45232.1| hydrogenase, Fe-only [Thermodesulfatator indicus DSM 15286]
Length = 510
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 203/379 (53%), Gaps = 31/379 (8%)
Query: 92 VIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
V++ +P R ++ E FG+ P + + +L L+ LG ++FDT+ + DLT++E EF+
Sbjct: 147 VVVQTAPAVRVAIGEEFGLPPGEWEEGQLVAALRRLGFDAVFDTNFAADLTIMEEATEFV 206
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R +++ LPM +S CPGW+ +AE +L ++SS KSPQQ +GA K
Sbjct: 207 KRVVYAEKP--------LPMFTSCCPGWVKFAE-YFYPELLSHLSSCKSPQQMLGAVAKT 257
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ ++ G P +I + VMPC KK EA R ++ + E + +E + +VD VLT
Sbjct: 258 YYAKERGIDPSKIISIAVMPCTAKKFEAQRP----EMKAAAEYWHNEEI-TADVDLVLTV 312
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
E+ +++ K ++ AL E D +L ++GV +GG E R A L G+
Sbjct: 313 RELARMLKAKNIDLLALPEEDYDPILGEDTGAARIFGV---TGGVMEAAVRTAYYFLTGE 369
Query: 331 -VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 388
+ LEF +R D +E +L + G T + A+ G N++N+ V + F+E
Sbjct: 370 DPPDTLLEFTPVRGLDDVKEASLNINGAT-INIAVVNGLANVRNVCEIVMDNPNKWHFIE 428
Query: 389 VMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIY----LENVMLADPFKNPLVRSLYD 442
VMAC GC++GGGQ P+ P + I+ +E++Y L + L+ + N VR+LY+
Sbjct: 429 VMACRGGCISGGGQ--PRTEVPPTDEIRLARIESLYTSDELSQIRLS--YLNEEVRALYE 484
Query: 443 EWLEQPGSEKAKKHVHTEY 461
++L +P E A++ +HT Y
Sbjct: 485 KFLGEPNGELAEELLHTHY 503
>gi|373487460|ref|ZP_09578128.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
gi|372009542|gb|EHP10162.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
Length = 1061
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 202/410 (49%), Gaps = 32/410 (7%)
Query: 58 DCLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC++C C+ + L +S E F + N+ + ++P R+ ++ FGI Q
Sbjct: 671 DCVSCGQCVNACPCGALIAKSEKESVFRAINNQNLTTVAFVAPAVRSVISAEFGIPFDQA 730
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ LK LG +FD S + DLT++E EF+ R S LP +S C
Sbjct: 731 SNFMSGLLKKLGFGKVFDFSFAADLTIMEETTEFLDRVS---------SGGVLPQFTSCC 781
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E++ I P++SS KSPQ +GAT+K+H ++ V+++PC KK
Sbjct: 782 PGWVNFVERRYPDLI-PHLSSCKSPQMMMGATVKNHFASTSRADRRNLFVVSIVPCIAKK 840
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR +F + RD VD+VLT+ E+L+++ LK ++ + P D
Sbjct: 841 HEAARPEFA------PDGIRD-------VDAVLTSTEILEMLYLKRIDPSTIPMVPFDPP 887
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
V G L+ G+SGG AE R A + L G+ L+F+ IR + +E +E +
Sbjct: 888 YQQVSGAGVLF---GASGGVAEAALRLAVEKLTGQARCTQLDFEEIRGFEGLKEATIETQ 944
Query: 355 GKTLLKFALCYGFQNLQNIVRKV-KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+ ++ A+ G N + ++ + ++ Y +EVMACP GC+ G G P+ + +
Sbjct: 945 -DSRVRVAVVSGLHNAARLAEEIAQGQETGYDLIEVMACPGGCICGAGHPVPEKVGTLND 1003
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L I + +NP + LYDE+ +P S A K +HT Y P
Sbjct: 1004 RQQVLVDIDKTSSHRKSQ-ENPDIHRLYDEFFGEPNSPLAHKLLHTHYSP 1052
>gi|340057650|emb|CCC51996.1| putative iron-containing hydrogenase [Trypanosoma vivax Y486]
Length = 554
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 213/418 (50%), Gaps = 56/418 (13%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
+ +FS +L + + D+IAPS+ CV+ T V E VKISL+DCLA
Sbjct: 85 AAEFSSSLMLAGM-DYIAPSEACVLP----TVFQDSSVGVVGRHGSGGEVVKISLQDCLA 139
Query: 62 CSGCITSAETVMLEKQSLDEFL--SNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
CSGC+T+AET+++ QS +E L + + ++++S QS A++A H QV+ L
Sbjct: 140 CSGCVTTAETILITSQSREEILKARSTEPTRPFLVTISDQSAAAIAGHLKRPIRQVYNML 199
Query: 120 TTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
+ F +S LG + + D + ++ + E+ R + D R LP++ SACPGW
Sbjct: 200 SGFFRSVLGAQYVADLRWALHVSAEKTAKEYCRRMRH-----DPR---KLPLIVSACPGW 251
Query: 179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
+CY EKQ G + P V SPQ G K +C + I HV+V PC+D+KLEA
Sbjct: 252 VCYCEKQ-GGPLHPLHCPVMSPQGIAGCYAK-TMCAR-------ICHVSVQPCFDRKLEA 302
Query: 239 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN 298
R+ S E Y D VL+T E+L+ ++ +F + +PLD L +
Sbjct: 303 VRD----VSPSGNERY---------TDFVLSTQELLEWMRETDPSFPWV--APLDSALES 347
Query: 299 V-------DDEGHLYGVAGSSGGYAETVFRHAAKTLF-GKVIEGHLEFKTIRNSDFREVA 350
H + G SGGY +AA+ L ++ + ++T RN++ +
Sbjct: 348 PPPLAMKEPARAHTATMEG-SGGYHRFAMHYAARELHKTELSPDDVCYETKRNANHQ--- 403
Query: 351 LEVEGKTLLK-FALCYGFQNLQNIVRKVKMRK---CDYQFVEVMACPSGCLNGGGQIK 404
L K + + + YGFQ +QN VR +K ++ Y F+E+MACP GCLNGGGQ++
Sbjct: 404 LSTSAKNPGEVYCVAYGFQQIQNTVRGLKRKQASVASYTFIELMACPGGCLNGGGQVR 461
>gi|387233129|gb|AFJ73534.1| hydrogenase [Neocallimastix frontalis]
Length = 636
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 216/430 (50%), Gaps = 44/430 (10%)
Query: 54 ISLKDCLACSGC--ITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI- 110
++ C+ C C + + + +D K K V+ S +P R +LAE F
Sbjct: 227 MNFTKCVECGQCSQVCPVGAITARTEVVDVLRHLDTKRKVVVCSTAPAIRVALAEEFSTE 286
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ K+ L+ LG IFDT+ S DLT++E E I R + PM
Sbjct: 287 ADFDFTGKMVAGLRKLGFDYIFDTNFSADLTIMEEGTELIDRLN---------NGGKFPM 337
Query: 171 LSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
+S CPGWI EK SY + +SS KSPQQ IGA IK + +KLG ++I HV++
Sbjct: 338 FTSCCPGWINMVEK---SYPELSDNLSSCKSPQQMIGAVIKSYFAKKLGLSTEDIIHVSI 394
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA R +FV + +G + P++D V+TT E+L L++LK +N L
Sbjct: 395 MPCTAKKGEARRPEFVQK--------GKDGKDYPDIDYVITTRELLTLLKLKKINPAELP 446
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD 345
+ D L G+L+GV +GG E R A+ + G +E + E K IR D
Sbjct: 447 DDKFDSPLGIGSSAGNLFGV---TGGVMEAAIR-TAQVITG--VENPIPLGELKAIRGLD 500
Query: 346 ---FREVALEV-EGKTL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
V L+ +GK + ++ A+ G N+Q + K+K ++ ++ F+E+M CP GC+NGG
Sbjct: 501 GIKAANVPLKTKDGKEVSVRAAVVSGGANIQKFLEKIKNKELEFDFIEMMMCPGGCINGG 560
Query: 401 GQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GQ K P+ + K ++ +Y + L +NP + +Y +L +P S A + +H
Sbjct: 561 GQPK---SADPEIVAKKMQRMYTMDDQAKLRLCHENPEIIDVYKNFLGEPNSHLAHELLH 617
Query: 459 TEYHPVVKSI 468
T Y+ K+I
Sbjct: 618 THYNDRSKTI 627
>gi|407409966|gb|EKF32588.1| hydrogenase, putative [Trypanosoma cruzi marinkellei]
Length = 474
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 218/439 (49%), Gaps = 62/439 (14%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSS-----KQQAEPVKISL 56
+ FS +L + + D+IAPS+ C + P + Q T E VKI+L
Sbjct: 3 TSNFSASLMLAGM-DYIAPSEACTL---------PTRLQRGTDGWVERHASGNEVVKITL 52
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFLS--NINKGKAVIISLSPQSRASLAEHFGISPLQ 114
+DCLACSGC+T+AET+++ QS E + + + ++++S QS AS+A H + +
Sbjct: 53 QDCLACSGCVTTAETILVTSQSRTEIIKVRASDPDRPFLVTISDQSAASIAAHLKVDTRR 112
Query: 115 VFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
F ++ F ++ L + + D ++ +++ + E+ R + +++ LPM+ S
Sbjct: 113 AFHIISGFFRTVLKSQYVSDLRWAQRISVEKTAQEYCHRLQHARD--------KLPMIVS 164
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
ACPGW+CY EKQ GS ILP + V SPQ G K Q + H++V PC+D
Sbjct: 165 ACPGWVCYCEKQ-GSAILPLLCPVMSPQGIAGCYAKRVFPQ--------LCHISVQPCFD 215
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
+KLEAAR+ +D E D VL+T E+++ + + E+PL+
Sbjct: 216 RKLEAARDT---SMDGNERY----------TDFVLSTQELMEWMMETDASIPW--EAPLN 260
Query: 294 KMLTNV------DDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSDF 346
++ + L SGGY ++ A+ + + ++ RN++
Sbjct: 261 SSFESLPAPSLKESSSVLVATMEGSGGYHRFAMQYVAEKVHNLPFSPDDILYEMKRNAN- 319
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---DYQFVEVMACPSGCLNGGGQI 403
VA + + + YGFQ++QNIVR +K + Y F+E+MACP GCLNGGGQ+
Sbjct: 320 HHVATSPSNPDEV-YCVAYGFQHIQNIVRGLKRKLASVSSYTFIELMACPDGCLNGGGQV 378
Query: 404 KPKPGQSPKELIKTLETIY 422
+ S E I ++TI+
Sbjct: 379 RSGNLASNLETIAAVKTIF 397
>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum
thermopropionicum SI]
gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
[Pelotomaculum thermopropionicum SI]
Length = 530
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 206/413 (49%), Gaps = 28/413 (6%)
Query: 59 CLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C+ C C + + + ++ + F + +K K V++ +P +R +L E FG+ P V
Sbjct: 123 CINCGQCSMACPSGAISERDDTKKVFEALADKDKFVLVQTAPATRVALGEEFGLPPGTWV 182
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ L+ LG ++ DT+ + DLT++E E I R K LP +S
Sbjct: 183 QGQQVAALRRLGFNAVLDTNFAADLTIMEEATELIKRIKGE-------VKKPLPQFTSCS 235
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E ++P ISS KSPQQ GA K + + G P+ I V+VMPC KK
Sbjct: 236 PGWIKFCE-YFYPELIPNISSCKSPQQMFGALAKTYYARARGIDPENIVSVSVMPCTAKK 294
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R ++++ + ++ L +VD VLTT E+ +++ K ++ AL E DK+
Sbjct: 295 FEAQRP----EMNASAKYWKRGNLR--DVDVVLTTRELARMLKEKQIDLTALPEENYDKL 348
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTIRN-SDFREVALEV 353
+ ++G ++GG E R A + G+ L +R + +E A E+
Sbjct: 349 MGEETGGAVIFG---ATGGVMEAAARTAYFLITGQEPPALFLNLTPVRGLAGVKEAAAEI 405
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L+ A+ +G N + I+ V+ K + FVE M CP GC+ GGGQ P+ P +
Sbjct: 406 PGVGTLRVAVSHGMANGRKILNAVREGKAPWHFVEFMTCPGGCIAGGGQ--PRTAVPPSD 463
Query: 414 LIK--TLETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
++ L +Y + L+ ++N V +LY ++L P SE A++ +HTEYH
Sbjct: 464 TVREQRLAALYKADASLSKRKSYENEEVAALYRDFLGHPMSELAEELLHTEYH 516
>gi|310658216|ref|YP_003935937.1| putative catalytic subunit of iron-only hydrogenase ([Fe]
hydrogenase) [[Clostridium] sticklandii]
gi|308824994|emb|CBH21032.1| putative catalytic subunit of iron-only hydrogenase ([Fe]
hydrogenase) [[Clostridium] sticklandii]
Length = 577
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 209/408 (51%), Gaps = 35/408 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
C C C+ T L E ++ + IN K V++ +P R +L E FG+ P V
Sbjct: 194 CTFCGQCLAVCPTAALTEVNNVSKVWDAINSKKYVVVQTAPAVRVALGEEFGMEPGTVVT 253
Query: 118 -KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ L++LG +FDT + DLT++E +EF+ R + LP+L+S CP
Sbjct: 254 GKMAAALRTLGFDKVFDTDFAADLTIMEEASEFVHRLEHG---------GKLPILTSCCP 304
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GW+ + E Q S +L SS KSP + GA K ++ +KL +P+++ V+VMPC KK
Sbjct: 305 GWVKFFEHQF-SDMLDIPSSCKSPHEMFGAVAKTYLAEKLDVKPEDMIVVSVMPCVAKKY 363
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
E+AR + +VD V+TT E+ +I+ +NF LE+ D L
Sbjct: 364 ESARPELGHG-------------GTKDVDIVITTRELAQMIKEAGINFNELEDQDFDNPL 410
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEG 355
++G ++GG E R A + L + +E ++EF+ +R D +E + + G
Sbjct: 411 GESTGASVIFG---TTGGVIEAALRTAYEWLTKETLE-NVEFEALRGLDGTKEATVNING 466
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415
+ + K A+ +G N + ++ K++ + +Y +E+MACP GC+ GGGQ P L
Sbjct: 467 QDI-KIAVTHGLGNARALLEKIRAGEAEYHAIEIMACPGGCIGGGGQ--PYHHGDLSILS 523
Query: 416 KTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +E IY E+ + +NP+++ LY E+L +P KA + +HT Y
Sbjct: 524 RRIEGIYSEDRAKTIRKSHENPMIKQLYAEYLGEPYGHKAHELLHTTY 571
>gi|334340941|ref|YP_004545921.1| hydrogenase Fe-only [Desulfotomaculum ruminis DSM 2154]
gi|334092295|gb|AEG60635.1| hydrogenase, Fe-only [Desulfotomaculum ruminis DSM 2154]
Length = 657
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 184/363 (50%), Gaps = 36/363 (9%)
Query: 55 SLKD--CLACSGCITSAETVMLEKQS-LDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C+ C CI L S + E + I + K V+ ++P RA+L E FG+
Sbjct: 183 SLADSACINCGQCIAVCPCGALSSNSSIAEVWAAIRDPKKTVVCQIAPAPRAALGEMFGL 242
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V K+ T L+ G +FDT + D+T +E NEF+ R S LP+
Sbjct: 243 GSVDVTGKIVTALRKSGFDKVFDTVFTADMTTVEESNEFLGRLT---------SGGKLPL 293
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ YAE + +L +S+ +SPQQ G+ +K + LG P+E++ V++MP
Sbjct: 294 FTSCCPGWVKYAE-EFHPELLENLSTCRSPQQMFGSVLKKKYAKDLGITPEEMFVVSIMP 352
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA R +F+ + +VD+VLTT E L + + F+ LEE
Sbjct: 353 CTAKKYEAKRPEFMTD-------------GVYDVDAVLTTVEAAQLFKEAGILFDNLEEG 399
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
D+ + G L+ G++GG E+V R+ A L EG ++ + R D ++A
Sbjct: 400 IFDQPMEQTTGSGVLF---GTTGGVMESVVRYVAGKLLNA--EGRIDVEFTRGLDDTKIA 454
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
G T L A+ G + +++K++ + + VEVMACP+GC+ GGGQ P Q+
Sbjct: 455 DLNVGDTKLTLAIVNGLAAAEELIKKIQSGELEVHAVEVMACPAGCVGGGGQ----PAQN 510
Query: 411 PKE 413
++
Sbjct: 511 DRK 513
>gi|333924613|ref|YP_004498193.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750174|gb|AEF95281.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 516
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 217/431 (50%), Gaps = 30/431 (6%)
Query: 51 PVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ L+ + +K V++ +P +R L E F
Sbjct: 103 PIKDDIT-CVNCGQCTLWCPTAAITERDDTARVLAALKDKNMHVVVQTAPATRVGLGEEF 161
Query: 109 GISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G++P V K LK LG ++FDT+ S DLT+ E E I R +
Sbjct: 162 GMAPGTFVEGKQVAALKKLGFDAVFDTNFSADLTIFEEGTELIRRITGDLKE-------P 214
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +LP++SS KSPQQ +GA IK + ++ G P++I+ V+
Sbjct: 215 LPQFTSCSPGWVKFCEYYYPD-LLPHMSSCKSPQQMLGALIKTYYAKEKGIDPEKIFSVS 273
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK E R +++S + L +VD+VLTT E+ L++ + ++ L
Sbjct: 274 IMPCTAKKFECQRP----EMNSAGKHVGKPALR--DVDAVLTTRELARLLKSQGIDINNL 327
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
++ D ++ G ++ G++GG E R A + + L IR
Sbjct: 328 PDAKYDSLMGESSGAGLIF---GATGGVMEAAIRSAYFLITKQDPPAAFLNLTPIRGLKG 384
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
+E A+++ G LK A+ +G N + ++ V+ ++ + F+E M CP GC++GGGQ P
Sbjct: 385 CKEAAVDIPGVGTLKVAVVHGLSNARPVLEAVRKKEAPWHFIEFMCCPGGCISGGGQ--P 442
Query: 406 KPGQSPKELIK--TLETIYLENVML---ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+ P + ++ + ++Y + + ++N V +LY+++LE P S A + +HTE
Sbjct: 443 RTSLPPSDTVRQARINSLYNADANIYKERKSYENKEVLALYEKFLENPNSHLAHELLHTE 502
Query: 461 YHPVVKSITAQ 471
Y K +TA+
Sbjct: 503 YVDRGKKLTAK 513
>gi|225572307|ref|ZP_03781171.1| hypothetical protein RUMHYD_00601 [Blautia hydrogenotrophica DSM
10507]
gi|225040189|gb|EEG50435.1| hydrogenase, Fe-only [Blautia hydrogenotrophica DSM 10507]
Length = 587
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 208/416 (50%), Gaps = 38/416 (9%)
Query: 52 VKISLKDCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFG 109
V +S C+ C C+ L EK S+ + ++ ++ V+ ++P + +L E F
Sbjct: 196 VNLSATACINCGQCVKVCPVAALTEKDSIHKAIAALDDPNTTVVWQMAPAIQNTLGEEFC 255
Query: 110 ISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
+ P V KK++ +K LG + F T S D+T++E EFI R + L
Sbjct: 256 LPPGTDVTKKISAAMKQLGGYA-FTTDFSADVTIMEEGTEFIQRVTKG---------GVL 305
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S CPGW+ Y E L ++S+ KSPQQ GA +K+++ +K+G + I +++
Sbjct: 306 PMMTSCCPGWVKYMEYHYPDQ-LDHLSTCKSPQQMFGALVKNYLPEKIGVPAENICQISI 364
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK E R + + E RD VD VLTT E L +L+ +N A++
Sbjct: 365 MPCVAKKFERDRTEM------ESENGRD-------VDIVLTTREAAKLFKLRGINLAAIQ 411
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFR 347
E D + G ++G ++GG E R L G I+ ++++ R +
Sbjct: 412 EEEFDDFMGEGSGAGRIFG---TTGGVMEAALRTVVWKLTGGKID-QIDYQEARGYKGLK 467
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E ++++ G +K A+ G N++ ++ ++ K Y F+EVMACP GCLNGGG
Sbjct: 468 EASVKI-GDLEVKIAIVNGIGNVKPVMEDIRAGKSPYHFIEVMACPGGCLNGGGA---PL 523
Query: 408 GQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
SP + + ++ +Y +N + +N V+ LY+E+L++P + +HT Y
Sbjct: 524 TASPDMIARRMDQMYESDKNSAIRRSHENKEVQKLYEEYLKEPCGHISHHLLHTAY 579
>gi|333980293|ref|YP_004518238.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823774|gb|AEG16437.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 574
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 234/467 (50%), Gaps = 45/467 (9%)
Query: 10 RIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSS------KQQAEPV-KISLKD--CL 60
R+ +LS I Q+ + ++ + +V+ S K + EP SL D C
Sbjct: 132 RLDNLSPSIVRDQSKCILCRRCVTVCKEIQEVAAISIQGRGFKTRVEPAFGESLNDVACA 191
Query: 61 ACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFK 117
C CI + EK+ ++E I + K V++ +P RA+L E FG P V
Sbjct: 192 LCGQCILVCPVGAIHEKEHIEEVWHAIFDPSKFVVVQDAPAVRAALGEEFGYPPGTLVTG 251
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
K+ ++ LG +FDT+ + DLT+IE +E + R K+ LPM++S PG
Sbjct: 252 KMLAAVRRLGFDRVFDTNFAADLTIIEEGHELLKRIKE---------GGVLPMITSCSPG 302
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
W+ + E +LP++S+ KSP Q +GA +K + QK+G P ++ V+VMPC KK E
Sbjct: 303 WVKFIE-HFYPELLPHLSTCKSPHQMLGALVKTYYAQKVGVDPKDMVVVSVMPCTAKKFE 361
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
R + Y+D VD V+TT E+ +I+ ++F +LE+ D L
Sbjct: 362 CNRPEM------NGSGYKD-------VDYVITTRELAKMIKQAGIDFASLEDGYYDDPLG 408
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGK 356
G ++ G++GG E R + + GK +E LEF +R D +E + VEG
Sbjct: 409 EYSGAGTIF---GATGGVMEAALRTVYELVTGKTLE-RLEFTAVRGLEDIKEAVVPVEGL 464
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
LK A+ +G N + I+ ++K DY F+E+M CP GC+ GGGQ P P +++
Sbjct: 465 GELKVAVAHGLGNARKILDRIKDGSADYHFIEIMCCPGGCVGGGGQ--PLPVNDEIRMLR 522
Query: 417 TLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+Y E+ + + +NP ++ LY+E+L +P EK+ + +HT Y
Sbjct: 523 A-RALYQEDEKLRIRKSHENPSIKKLYEEFLGRPLGEKSHQLLHTRY 568
>gi|323701562|ref|ZP_08113235.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|323533571|gb|EGB23437.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
Length = 529
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 217/431 (50%), Gaps = 30/431 (6%)
Query: 51 PVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ L+ + +K V++ +P +R L E F
Sbjct: 116 PIKDDIT-CVNCGQCTLWCPTAAITERDDTARVLAALKDKNMHVVVQTAPATRVGLGEEF 174
Query: 109 GISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G++P V K LK LG ++FDT+ S DLT+ E E I R +
Sbjct: 175 GMAPGTFVEGKQVAALKKLGFDAVFDTNFSADLTIFEEGTELIRRITGDLKE-------P 227
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +LP++SS KSPQQ +GA IK + ++ G P++I+ V+
Sbjct: 228 LPQFTSCSPGWVKFCEYYYPD-LLPHMSSCKSPQQMLGALIKTYYAKEKGIDPEKIFSVS 286
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK E R +++S + L +VD+VLTT E+ L++ + ++ L
Sbjct: 287 IMPCTAKKFECQRP----EMNSAGKHVGKPALR--DVDAVLTTRELARLLKSQGIDINNL 340
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
++ D ++ G ++ G++GG E R A + + L IR
Sbjct: 341 PDAKYDSLMGESSGAGLIF---GATGGVMEAAIRSAYFLITKQDPPAAFLNLTPIRGLKG 397
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
+E A+++ G LK A+ +G N + ++ V+ ++ + F+E M CP GC++GGGQ P
Sbjct: 398 CKEAAVDIPGVGTLKVAVVHGLSNARPVLEAVRKKEAPWHFIEFMCCPGGCISGGGQ--P 455
Query: 406 KPGQSPKELIK--TLETIYLENVML---ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+ P + ++ + ++Y + + ++N V +LY+++LE P S A + +HTE
Sbjct: 456 RTSLPPSDTVRQARINSLYNADANIYKERKSYENKEVLALYEKFLENPNSHLAHELLHTE 515
Query: 461 YHPVVKSITAQ 471
Y K +TA+
Sbjct: 516 YVDRGKKLTAK 526
>gi|50344697|dbj|BAD29951.1| hydrogenase [Clostridium paraputrificum]
Length = 582
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 204/415 (49%), Gaps = 42/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ + L EK +D + + K VI++++P R ++ E F + +
Sbjct: 189 NCLLCGQCVAACPVGALSEKTHIDRVKEALEDPEKHVIVAMAPAVRTAMGELFNMGYGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG IFD + D+T++E E + R ++ PM +S
Sbjct: 249 VTGKLYTALRELGFDRIFDINFGADMTIMEEATELLERIEKK---------GPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CPGW+ +Q+ +Y +L +SS KSPQQ G K + G P++I+ VT+MPC
Sbjct: 300 CPGWV----RQVENYYPELLENLSSAKSPQQIFGTASKTYYPHIAGIDPEKIFTVTIMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA RED +LD + +D+VLTT E+ I+ K + F LE+S
Sbjct: 356 TAKKFEADRED--MELDG-----------LRNIDAVLTTRELAKFIKEKKIAFAKLEDSE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
D + G ++ G++GG E R A + + K +E +L++ +R + +E +
Sbjct: 403 ADPAMGEYTGAGVIF---GATGGVMEAAIRTAKEFVEKKELE-NLDYTEVRGLNGIKEAS 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+ + G+ A+ G NL + +M +Y F+EVM CP GC+NGGGQ +
Sbjct: 459 VNIGGED-YNVAVINGSANLFEFIESGRMNSKEYHFIEVMTCPGGCVNGGGQPHVNNLER 517
Query: 411 PKELIKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K IK++ L N +N + +YDE++ QPG KA + +H +Y
Sbjct: 518 EKIDIKSVRASVLYNQDKSAKKRKSHENVALMKMYDEYMGQPGRGKAHELLHYKY 572
>gi|150018615|ref|YP_001310869.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149905080|gb|ABR35913.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 461
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 217/460 (47%), Gaps = 70/460 (15%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETV---------MLEKQSLDE---------F 82
V+ ++ +P I C++C CI + ++E++ D
Sbjct: 25 VNAIQGKKGQPQNIDYDVCVSCGQCIQVCNSYGFENRENSHLIEEKRRDRGVLESVKEPV 84
Query: 83 LSNINKGKAV-------------IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGV 128
+ NKG A I+ +P R SL E FG+ + K+ L+ LG
Sbjct: 85 FAAFNKGNAAKVKEALHDEELFTIVQCAPAVRVSLGEEFGLKAGSLTAGKMAAALRRLGF 144
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
++DT+ DLT++E +E I R + E LPM +S CP W+ + E+ S
Sbjct: 145 NRVYDTNFGADLTIMEEGSELIKRVTEGGE---------LPMFTSCCPAWVKFMEQ---S 192
Query: 189 Y--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 246
Y +L ++SS KSPQQ G K + + P +IY+V +MPC K+ E RE+
Sbjct: 193 YPELLNHLSSCKSPQQMAGTIFKTYGAKIDKVNPKKIYNVAIMPCTCKQFECDREEM--- 249
Query: 247 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 306
Q+ ++D VD V+TT E LI+ ++F+ L++ D L + G+++
Sbjct: 250 ---QDSGFKD-------VDIVITTREFAQLIRDNEIDFKNLKDEEFDLPLGSYTGAGNIF 299
Query: 307 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 366
GV +GG E R + L K I +LE +R S+ VA K LK A+ G
Sbjct: 300 GV---TGGVMEAALRSGYEMLTKKSIP-NLELNFVRGSEGIRVAEVKLPKITLKVAVVSG 355
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYL 423
+N+ I+ +K KCD+ F+EVM CP GC++GGGQ PK L+ + IY
Sbjct: 356 LKNVVQILEDIKEGKCDFDFIEVMTCPEGCVSGGGQ--PKFILDIDRRNALVSRKKGIYK 413
Query: 424 EN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + + +NP ++ LY+E+L +P EK+ +HT++
Sbjct: 414 HDSELEIRKSHENPFIKKLYEEFLIEPLGEKSHHLLHTKF 453
>gi|169351249|ref|ZP_02868187.1| hypothetical protein CLOSPI_02028 [Clostridium spiroforme DSM 1552]
gi|169292311|gb|EDS74444.1| hydrogenase, Fe-only [Clostridium spiroforme DSM 1552]
Length = 582
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 217/417 (52%), Gaps = 44/417 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
+C+ C CI L EK+ + + ++ +N K VI+ +P RASL E FG+ P+
Sbjct: 190 NCMQCGQCINVCPVGALHEKEEVHDVIAALNDPTKHVIVQTAPAVRASLGEEFGM-PIGT 248
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+V K+ LK +G ++DT+ DLT++E +EFI+R + +N LPM++S
Sbjct: 249 RVTGKMVHALKLMGFDKVYDTNFGADLTIMEEGHEFISRIQ---------NNGVLPMITS 299
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGW+ Y E + +L ++SS KSP +GA +K + ++ P +IY V++MPC
Sbjct: 300 CSPGWVNYIEHEY-PELLDHLSSCKSPHMMLGAMLKSYYAKENNIDPKDIYVVSIMPCVA 358
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ + +GL+ +VDSVLTT E+ LI++ +NF+ L++ D
Sbjct: 359 KKGEKEREENL-----------TDGLK--DVDSVLTTRELGKLIKMFGINFKDLKDEDFD 405
Query: 294 K-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
+ M G ++ G+SGG E R L K + +L++ +R + +E ++
Sbjct: 406 QDMFGEYTGAGVIF---GASGGVMEAALRTVVDVLTKKDLT-NLDYHAVRGEEGVKEASI 461
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPK 406
++ G + A+ + + ++ +K Y F+E+M CP GC+NGGGQ +
Sbjct: 462 KI-GDLTVNVAVAHSMTLAKPLLDDIKNGTSKYHFIEIMGCPGGCVNGGGQSYINALTRN 520
Query: 407 PGQSPKELIKTLETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
G K+ + +Y E++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 521 SGFDWKQ--ARAKALYDEDLSLPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 575
>gi|331269709|ref|YP_004396201.1| hydrogenase [Clostridium botulinum BKT015925]
gi|329126259|gb|AEB76204.1| hydrogenase [Clostridium botulinum BKT015925]
Length = 582
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 201/419 (47%), Gaps = 47/419 (11%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+++ L E+ ++ ++ + N K VI++++P RAS+ E F + +
Sbjct: 195 NCLLCGQCVSACPVDALSERSHINRVITALENPKKHVIVAIAPSVRASIGEAFNMGYGID 254
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T LK L +FD + DLT+IE E I R K +N PM +S
Sbjct: 255 VTGKLYTSLKILRFDKVFDLNFGADLTIIEESCELIKRIK---------NNGPFPMFTSC 305
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGWI EK ++P +SS KSPQQ GA K + + P +I+ VT+MPC K
Sbjct: 306 CPGWIRQVEKYFKE-LIPNLSSTKSPQQIFGAATKTYYPHIMNMNPSDIFTVTIMPCTAK 364
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E+ R+D EG I +D+VLT E++ LI+ ++F+ LEES D
Sbjct: 365 KFESERDDMDI-----------EG--INSIDAVLTARELVKLIKNAKIDFKNLEESTPDP 411
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++ G++GG E R A L E + KTI S R E
Sbjct: 412 AMGEYSGAGVIF---GATGGVMEAALRTAKDFL-----ENNEHLKTIDYSSIRGFNGIKE 463
Query: 355 GKTLLK-----FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
LK A+ G N+ + K+ K Y F+EVM+C GC+NGGG P
Sbjct: 464 ATVTLKEQNYNIAVINGASNVFKFMNSDKINKKQYHFIEVMSCEGGCINGGGH--PHINS 521
Query: 410 SPKELI--KTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ +ELI K L + L +N+ +N + +Y ++ +PG++ A K H Y+
Sbjct: 522 NDRELINYKQLRSSVLYNQDKNLSKRKAHENEALIKMYKNYIGKPGNDLAHKIFHISYN 580
>gi|255719234|ref|XP_002555897.1| KLTH0H00396p [Lachancea thermotolerans]
gi|238941863|emb|CAR30035.1| KLTH0H00396p [Lachancea thermotolerans CBS 6340]
Length = 463
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 226/465 (48%), Gaps = 104/465 (22%)
Query: 13 DLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAE-----------PVKISLKDCLA 61
DL+DFI+P CV P +P + KQ+ + V ISL+DCLA
Sbjct: 9 DLNDFISPGLACV---------KPAEP-IEKGEKQEGDLEVGKESNDMGKVSISLQDCLA 58
Query: 62 CSGCITSAETVMLEKQSLDEFL---SNINKGKAVIISLSPQSRASLAEHFGISPLQVFKK 118
CSGCITS+E ++L +QS FL N+ + A+++S+ PQ R SLA ++ +S L+ F K
Sbjct: 59 CSGCITSSEEILLSQQSHTVFLEAWKNLARDTALVVSIPPQCRLSLAHYYDMS-LESFDK 117
Query: 119 --LTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
LT + G + I T R++T + N+ + K S+S P L + CP
Sbjct: 118 SFLTLMKEKFGARYIVGTQIGRNIT-VNQTNKLLTERKS-------LSSSKKPALCAVCP 169
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
G++ YAEK ++PY+ VKSPQQ GA +K I P+ IYH+T+MPC+DKKL
Sbjct: 170 GFVLYAEKT-KPELVPYLLDVKSPQQITGALLKKAI-------PN-IYHLTIMPCFDKKL 220
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ---LKAVNF-EALEESPL 292
EA+R+D EG EVD V+T E ++Q LK +F + +E+ L
Sbjct: 221 EASRKD-------------GEG----EVDCVITPREFATMLQEQDLKLTDFLTSTDETVL 263
Query: 293 DKMLT--NVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
+ + D H GS SGGYA H G I T +NSD +E
Sbjct: 264 KQSCSPPGWDISVHWASNEGSASGGYAYQYILHQKSLHPGSCISTI----TGKNSDLKEF 319
Query: 350 AL-EVEGKTLLKFAL-CYGFQNLQNIVRKVK-----------MRK--------------- 381
L +V + ++ + YGF+N+QN+VRK+ +RK
Sbjct: 320 RLMDVSNENVIASSSELYGFRNIQNMVRKLTSSGSASRNIKVLRKRATTSSNNGSSFGSA 379
Query: 382 ---CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE-LIKTLETIY 422
F+EVMACP GC+NGGG + + S + L K+LE Y
Sbjct: 380 VDPSKTDFIEVMACPGGCINGGGLLNGEANSSRRRALAKSLELEY 424
>gi|401623998|gb|EJS42075.1| nar1p [Saccharomyces arboricola H-6]
Length = 494
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 149/484 (30%), Positives = 227/484 (46%), Gaps = 85/484 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK-QQAEPVKISLKDCLACS 63
S L DL+DFI+P+ CV + KN + S++ Q E V I+L DCLACS
Sbjct: 1 MSALLSEADLNDFISPALACVKPTQVTKAKNNTNGEYEVSTEPDQLEKVSITLSDCLACS 60
Query: 64 GCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQVFKK 118
GCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 GCITSSEEILLSSQSHTVFLENWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAADLC 120
Query: 119 LTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
L F + K + T R L++ A + +A Q Q + ER P+LS+ CPG
Sbjct: 121 LMNFFHTQFRCKYMLGTEMGRILSINRAVEKIVAHKSQKQRAGAERK----PLLSAVCPG 176
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
++ Y EK + P + +VKSPQQ GA +K+ ++LG + YH+ +MPC+DKKLE
Sbjct: 177 FLIYTEKT-KPQLAPMLLNVKSPQQITGALVKNTF-KELGIESESFYHLALMPCFDKKLE 234
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE--ALEESPLDKM 295
A+R E+ D ++ V+T EV+ ++Q ++F A +++ L
Sbjct: 235 ASR----------PESLAD------AINCVITPREVVTMLQELKLDFHSFATKDTTLYGR 278
Query: 296 LT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDFREV 349
L+ D H + GS GGYA K G V+EG RNSD E
Sbjct: 279 LSPPGWDPRVHWASNLGGSCGGYAYQYVAAMQKLHPGSQMLVLEG-------RNSDIVEY 331
Query: 350 ALEVEGKTLLKFAL-CYGFQNLQNIVRKV-------------KMRK-------------- 381
L++ T+ A GF+N+QN+VRK+ +RK
Sbjct: 332 RLQLSDNTIAAAASELSGFRNIQNLVRKLTSGAGTERKRNITALRKRRVGSSANSRQMTP 391
Query: 382 ------------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVML 428
++EV ACP C+NGGG + + K+L++ L + + + +
Sbjct: 392 ASPAIAVAVADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQALNERHGQELAM 451
Query: 429 ADPF 432
DP
Sbjct: 452 VDPL 455
>gi|410727827|ref|ZP_11366022.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410597825|gb|EKQ52433.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 575
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 201/414 (48%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGIS-P 112
+CL C C+ + L EK +D E L + NK VI++++P R S+ E F +
Sbjct: 190 NCLLCGQCVIACPVAALSEKPHMDRVKEALEDPNK--HVIVAIAPSIRTSMGELFKLGYG 247
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V KL T L+ LG +FD + D+T++E EFI R K +N PM +
Sbjct: 248 VDVTGKLYTALRMLGFDKVFDINFGADMTIMEEATEFIERVK---------NNGPFPMFT 298
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CP W+ E + L +SS KSPQQ GA K + + G P +++ VTVMPC
Sbjct: 299 SCCPSWVRLVENYYPEF-LENLSSAKSPQQIFGAASKTYYPEIEGLNPKDVFTVTVMPCT 357
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA R++ ++G I +D+V+TT E+ +I+ +NF LE+
Sbjct: 358 SKKFEADRKEMA-----------NDG--IRNIDAVITTRELAKMIKDSKINFANLEDGKA 404
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D + G ++G ++GG E R A + K + ++E+ +R D +E A+
Sbjct: 405 DLAMGEYTGAGVIFG---TTGGVMEAALRTAKDFVEDKDLT-NVEYTQVRGFDGIKEAAV 460
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
E+ G+ A+ G NL ++ K+ + Y F+EVM+CP GC+NGGGQ
Sbjct: 461 EIGGENY-NIAVINGSSNLFEFMKSGKINEKQYHFIEVMSCPGGCINGGGQPHVNAKDRE 519
Query: 412 KELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L L +N+ KN + +Y E++ PG A K +H +Y
Sbjct: 520 NVDVRALRASVLYNQDKNLEKRKSHKNSALLKMYHEYMGAPGEGIAHKLLHIKY 573
>gi|154318177|ref|XP_001558407.1| hypothetical protein BC1G_03256 [Botryotinia fuckeliana B05.10]
Length = 542
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 216/482 (44%), Gaps = 132/482 (27%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNP---DKPQVSTSSK----QQAEPVKISLK 57
S L DL+DFI+P C+ ++ P ++ ++S ++ P +ISL
Sbjct: 1 MSAILSADDLNDFISPGVACIKPVETLPAAKPSADNELEISFNTDAPLPSDLPPAQISLT 60
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK-----------------------GKAVII 94
DCLACSGC+TSAE V++ QS E LS ++ GK +
Sbjct: 61 DCLACSGCVTSAEAVLVSLQSHAEVLSQLDSAPGIRLHKSATGTGVSVEGLEQGGKIYVA 120
Query: 95 SLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLTLI 143
S+SPQSRAS+A FG++ + + L G+K+ + DT+ +R+ L+
Sbjct: 121 SVSPQSRASIAATFGVTEREAGYMIEHLLSGPKGIKNRAVYRNAFQWVVDTNITREACLV 180
Query: 144 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 203
E IA ++E+ P+L+S+CPGW
Sbjct: 181 LGAEEVIASMNGTEETKK-------PILTSSCPGWTT----------------------- 210
Query: 204 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 263
+ +KLG P+ I+HV VMPC+DKKLEA+RE+ D+ E G+ +
Sbjct: 211 --------LSRKLGISPERIWHVAVMPCFDKKLEASREELT---DAVWEGTGTRGVR--D 257
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPL---------DKMLTN------VDDEGHLYGV 308
VDSV+T+ E+L L + ++F L +PL D L + +
Sbjct: 258 VDSVITSKELLMLADSRRIDFSKLPRTPLPSSSHIPFPDPTLNSFLFPSNRRSSSNGSRD 317
Query: 309 AGSSGG---YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALC 364
AGSSGG YA F K + I+G RN+D + + + G LLK A
Sbjct: 318 AGSSGGNLHYALHYFASQHKGSSVQTIKG-------RNADVVDYTVVADNGDILLKAARY 370
Query: 365 YGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQ 402
YGF+N+QN+VR++K + DY +VEVMACP GC NGGGQ
Sbjct: 371 YGFRNIQNLVRRLKPARPSRMPGGKPIGSARRPNGKATGPDYTYVEVMACPGGCTNGGGQ 430
Query: 403 IK 404
IK
Sbjct: 431 IK 432
>gi|218133997|ref|ZP_03462801.1| hypothetical protein BACPEC_01887 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991372|gb|EEC57378.1| hydrogenase, Fe-only [[Bacteroides] pectinophilus ATCC 43243]
Length = 573
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 214/430 (49%), Gaps = 40/430 (9%)
Query: 42 STSSKQQAEPVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQ 99
S ++ A KI DC AC C+T L EK + + L+ +N + + ++ ++P
Sbjct: 171 SRTTVDVANGRKIEHADCAACGQCVTHCPVGALREKDDIGKVLAALNDPETITVVQVAPA 230
Query: 100 SRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQE 158
R + E G+ + K+L + L+ +G +FDT+ S DLT++E NEFI R K +
Sbjct: 231 VRTAWGEDLGMPGDVATEKRLASVLRHIGFDYVFDTNFSADLTIMEEGNEFIERLKNPDK 290
Query: 159 SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
S LPM +S CPGW+ + + Q ++ +S+ KSPQQ GA +K + +K
Sbjct: 291 S-------RLPMFTSCCPGWVRFVKSQYPEFV-DNLSTAKSPQQMFGAVVKSYFAKKADI 342
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 278
P I V++MPC KK EAA ++ Q+ VD VLTT E L++
Sbjct: 343 DPSRICSVSIMPCTAKKAEAAYDNMSSAGYGQD------------VDYVLTTREFARLVR 390
Query: 279 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 338
+A+ EAL E D L G ++G ++GG E R A + GK + F
Sbjct: 391 GEAIIPEALPEEDFDSPLGTYSGAGVIFG---ATGGVMEAALRSAFYLVTGKNPDAD-AF 446
Query: 339 KTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
+R + ++E A V G + + A +G N + ++ +K + Y FVEVMACP GC+
Sbjct: 447 SAVRGMNPWKEAAFNVGGNEI-RTATVHGLGNTRQLLDAIKRGEVKYDFVEVMACPGGCV 505
Query: 398 NGGGQIKPKPGQSPKELIKTLETIYL-----ENVMLADPFKNPLVRSLYDEWLEQPGSEK 452
GGGQ P + +EL K I +N+ + +NP V +Y+E+ E+P S
Sbjct: 506 GGGGQ----PIRDGQELAKDRAPILYSLDRSKNIRFS--HENPDVLKMYEEFFEKPNSPV 559
Query: 453 AKKHVHTEYH 462
A K +HT++H
Sbjct: 560 AHKLLHTDHH 569
>gi|385800509|ref|YP_005836913.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Halanaerobium praevalens DSM 2228]
gi|309389873|gb|ADO77753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Halanaerobium praevalens DSM 2228]
Length = 573
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 198/408 (48%), Gaps = 37/408 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQ 114
+C C C T + E +D+ + + + + VI+ +P +A+L E FG+ +
Sbjct: 193 NCANCGQCATVCPVGAITEINEIDKVWAALEDDDRHVIVQTAPSIQATLGEEFGMETGTI 252
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ LK +G +F T + DLT++E +EF+ + E LP ++S
Sbjct: 253 VTGKMVAALKRMGFDKVFSTDFAADLTILEEGSEFLKKLNGEGE---------LPHITSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ +AE +L ++SS KSP Q A K + + G P++IY V VMPC K
Sbjct: 304 CPGWVKFAEHNFPD-LLKHLSSAKSPMQMFSALGKTYYPDQTGVDPEKIYTVAVMPCTAK 362
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+ G + + D+VLTT E +I+ +NF L E D
Sbjct: 363 KFEKDREEI-------------NGSDFKDTDAVLTTREFARMIKEMGINFNKLPEEDFDA 409
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTIRNSDFREVALEV 353
++ G ++G ++GG AE R + L G+ +E L F+ I ++ R
Sbjct: 410 LMGKSTGAGTIFG---TTGGVAEAAVRTVKEKLTGEPLERLDLGFRGINKAEVRI----- 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L+K + G N I+ +V+ + D F+EVMACP GC+ GGGQ +P + ++
Sbjct: 462 -GDRLIKVGIANGLGNASKILEQVRKGESDLDFIEVMACPHGCVGGGGQPRPATNEKKEK 520
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L I ++ + +NP + LY+E+L +P ++ +HT+Y
Sbjct: 521 RGSGLSNID-DSSKIRKSHENPQIIKLYEEFLGEPLGGESHHLLHTKY 567
>gi|323307488|gb|EGA60759.1| Nar1p [Saccharomyces cerevisiae FostersO]
Length = 493
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 151/515 (29%), Positives = 241/515 (46%), Gaps = 89/515 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK + P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R + + D+G +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRPESL-----------DDG-----IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMIVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 ----------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLAD 430
++EV ACP C+NGGG + + K+L++TL + E + + D
Sbjct: 392 AAATAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVD 451
Query: 431 P------FKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
P + R L E++ PG +K + +
Sbjct: 452 PLTLGPKLEEAAARPLSLEYVFAPGQAGRRKRISS 486
>gi|323142351|ref|ZP_08077183.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413235|gb|EFY04122.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 574
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 207/415 (49%), Gaps = 33/415 (7%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQS----LDEFLSNINKGKAVIISLSPQSRASLAEH 107
V I DC C CIT L++++ + + L++ NK ++ ++P R S AE
Sbjct: 181 VSIEDSDCSLCGQCITHCPVGALKERNDVPKIYDVLADPNK--VTVVQVAPAVRTSWAEA 238
Query: 108 FGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNS 166
F + P L ++ LK +G +FDT + D+T++E +E + ++ Q+
Sbjct: 239 FNLPPELATEGRMVATLKKIGFDYVFDTCYAADVTIMEEASELLEHLQKPQDH------- 291
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHV 226
S PM +S CPGW+ Y K Y +P +S+ KSPQQ GA K + QK G +P EI +
Sbjct: 292 SWPMFTSCCPGWVSYVNKT-HPYFVPNLSTTKSPQQIFGALAKSYFAQKKGLKPKEICSI 350
Query: 227 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA 286
++MPC KK EAA +F + R G +VD VLTT E + L++ + +N
Sbjct: 351 SIMPCVSKKREAA----LFSM-------RSSGTH--DVDIVLTTREFIRLLRAEHINPAM 397
Query: 287 LEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDF 346
L+E P D L G ++ G+SGG E R A + GK F +R ++
Sbjct: 398 LDEQPFDNPLGQSTGAGVIF---GASGGVMEAALRTAYHVIEGKEAPED-AFTDVRGTEG 453
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
R+V G L+ G N ++ ++K K Y FVEVMACP GC+ GGGQ
Sbjct: 454 RKVREFTLGGATLRTCTVSGLGNAGKLLDELKAGKVHYDFVEVMACPGGCVGGGGQPIHD 513
Query: 407 PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L L TI N L NP V+ LY ++LE+P SEKA++ +H+++
Sbjct: 514 GEERADVLGNKLYTID-SNRPLHQSHNNPDVQELYKDFLEKPLSEKAEQLLHSDH 567
>gi|126701030|ref|YP_001089927.1| iron-only hydrogenase, catalytic subunit HymC-like [Clostridium
difficile 630]
gi|255102610|ref|ZP_05331587.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-63q42]
gi|255308436|ref|ZP_05352607.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile ATCC 43255]
gi|423082851|ref|ZP_17071434.1| putative ferredoxin hydrogenase [Clostridium difficile
002-P50-2011]
gi|423086301|ref|ZP_17074710.1| putative ferredoxin hydrogenase [Clostridium difficile
050-P50-2011]
gi|423089917|ref|ZP_17078263.1| putative ferredoxin hydrogenase [Clostridium difficile 70-100-2010]
gi|115252467|emb|CAJ70310.1| putative iron-only hydrogenase, catalytic subunit HymC-like
[Clostridium difficile 630]
gi|357547170|gb|EHJ29064.1| putative ferredoxin hydrogenase [Clostridium difficile
002-P50-2011]
gi|357547288|gb|EHJ29178.1| putative ferredoxin hydrogenase [Clostridium difficile
050-P50-2011]
gi|357557447|gb|EHJ38990.1| putative ferredoxin hydrogenase [Clostridium difficile 70-100-2010]
Length = 593
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 210/411 (51%), Gaps = 37/411 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
+C C CI+ T + E ++ + +NK K +++ ++P R ++ E FG+ P +
Sbjct: 193 ECTFCGQCISVCPTGALTEVDNVPKLWDVLNKKEKTIVVQVAPAVRVAIGEEFGLEPGSI 252
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ LK+LG + +FDT+ D T++E EFI R ++ + +LP+L+S
Sbjct: 253 STGKMVAALKALGFEHVFDTNFGADFTIMEEATEFIERIQKGE---------NLPILTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMPCYD 233
CP W+ + E L SS KSPQ G+ K++ K LG P+E+Y V+VMPC
Sbjct: 304 CPAWVNFLEHNYPDK-LNLASSCKSPQGMFGSIAKNYYAPKILGINPEELYVVSVMPCVA 362
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA+RE+ + G I +VD +TT E+ +I+ A++ L++ D
Sbjct: 363 KKYEASREEL-----------SESG--ILDVDLSITTRELAKMIKEAAIDLPNLQDQDFD 409
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE 352
L ++G +SGG E R + + + K ++ ++ F +R RE +++
Sbjct: 410 NPLGKSTGAASIFG---ASGGVLEAALRTSYEKITNKTLD-NVNFTNVRGLKGIREASID 465
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
V+G T+ + +N + I+ KV+ +C Y +EVMACP GC+ G GQ P + +
Sbjct: 466 VDGTTV-NVCIVNTLKNARKIMDKVRSGECKYHIIEVMACPGGCVGGAGQ--PYHHGNTE 522
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + +Y N + +NP ++++Y ++ +P S+ A K++HT Y
Sbjct: 523 IVDRRANALYEIDRNKAIRKSHENPDLQAIYKDFFGEPNSDVAHKYLHTHY 573
>gi|255657360|ref|ZP_05402769.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-23m63]
gi|296451826|ref|ZP_06893545.1| periplasmic hydrogenase [Clostridium difficile NAP08]
gi|296879778|ref|ZP_06903752.1| periplasmic hydrogenase [Clostridium difficile NAP07]
gi|296259305|gb|EFH06181.1| periplasmic hydrogenase [Clostridium difficile NAP08]
gi|296429249|gb|EFH15122.1| periplasmic hydrogenase [Clostridium difficile NAP07]
Length = 593
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 210/411 (51%), Gaps = 37/411 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
+C C CI+ T + E ++ + +NK K +++ ++P R ++ E FG+ P +
Sbjct: 193 ECTFCGQCISVCPTGALTEVDNVPKLWDVLNKKEKTIVVQVAPAVRVAIGEEFGLEPGSI 252
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ LK+LG + +FDT+ D T++E EFI R ++ + +LP+L+S
Sbjct: 253 STGKMVAALKALGFEHVFDTNFGADFTIMEEATEFIERIQKGE---------NLPILTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMPCYD 233
CP W+ + E L SS KSPQ G+ K++ K LG P+E+Y V+VMPC
Sbjct: 304 CPAWVNFLEHNYPDK-LNLASSCKSPQGMFGSIAKNYYAPKILGINPEELYVVSVMPCVA 362
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA+RE+ + G I +VD +TT E+ +I+ A++ L++ D
Sbjct: 363 KKYEASREEL-----------SESG--ILDVDLSITTRELAKMIKEAAIDLPNLQDQDFD 409
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE 352
L ++G +SGG E R + + + K ++ ++ F +R RE +++
Sbjct: 410 NPLGKSTGAASIFG---ASGGVLEAALRTSYEKITNKTLD-NVNFTNVRGLKGIREASID 465
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
V+G T+ + +N + I+ KV+ +C Y +EVMACP GC+ G GQ P + +
Sbjct: 466 VDGTTV-NVCIVNTLKNARKIMDKVRSGECKYHIIEVMACPGGCVGGAGQ--PYHHGNTE 522
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + +Y N + +NP ++++Y ++ +P S+ A K++HT Y
Sbjct: 523 IVDRRANALYEIDRNKAIRKSHENPDLQAIYKDFFGEPNSDVAHKYLHTHY 573
>gi|254977029|ref|ZP_05273501.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-66c26]
gi|255094356|ref|ZP_05323834.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile CIP 107932]
gi|255316109|ref|ZP_05357692.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-76w55]
gi|255518770|ref|ZP_05386446.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-97b34]
gi|255651948|ref|ZP_05398850.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-37x79]
gi|260684912|ref|YP_003216197.1| iron-only hydrogenase, catalytic subunit [Clostridium difficile
CD196]
gi|260688570|ref|YP_003219704.1| iron-only hydrogenase, catalytic subunit [Clostridium difficile
R20291]
gi|306521697|ref|ZP_07408044.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-32g58]
gi|384362581|ref|YP_006200433.1| iron-only hydrogenase, catalytic subunit [Clostridium difficile
BI1]
gi|260211075|emb|CBA66447.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile CD196]
gi|260214587|emb|CBE07153.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile R20291]
Length = 593
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 210/411 (51%), Gaps = 37/411 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
+C C CI+ T + E ++ + +NK K +++ ++P R ++ E FG+ P +
Sbjct: 193 ECTFCGQCISVCPTGALTEVDNVPKLWDVLNKKEKTIVVQVAPAVRVAIGEEFGLEPGSI 252
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ LK+LG + +FDT+ D T++E EFI R ++ + +LP+L+S
Sbjct: 253 STGKMVAALKALGFEHVFDTNFGADFTIMEEATEFIERIQKGE---------NLPILTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMPCYD 233
CP W+ + E L SS KSPQ G+ K++ K LG P+E+Y V+VMPC
Sbjct: 304 CPAWVNFLEHNYPDK-LNLASSCKSPQGMFGSIAKNYYAPKILGINPEELYVVSVMPCVA 362
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA+RE+ + G I +VD +TT E+ +I+ A++ L++ D
Sbjct: 363 KKYEASREEL-----------SESG--ILDVDLSITTRELAKMIKEAAIDLPNLQDQDFD 409
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE 352
L ++G +SGG E R + + + K ++ ++ F +R RE +++
Sbjct: 410 NPLGKSTGAASIFG---ASGGVLEAALRTSYEKITNKTLD-NVNFTNVRGLKGIREASID 465
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
V+G T+ + +N + I+ KV+ +C Y +EVMACP GC+ G GQ P + +
Sbjct: 466 VDGTTV-NVCIVNTLKNARKIMDKVRSGECKYHIIEVMACPGGCVGGAGQ--PYHHGNTE 522
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + +Y N + +NP ++++Y ++ +P S+ A K++HT Y
Sbjct: 523 IVDRRANALYEIDRNKAIRKSHENPDLQAIYKDFFGEPNSDVAHKYLHTHY 573
>gi|374997362|ref|YP_004972861.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
gi|357215728|gb|AET70346.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
Length = 526
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 204/412 (49%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E+ +++ L I + V++ +P +R L E FG+ V
Sbjct: 115 CVNCGQCIQWCPSGAISERDDINKVLKAIADPNITVVVQTAPATRIGLGEEFGMPVGTNV 174
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG IFDT+ + DLT++E E + R K + +P +S C
Sbjct: 175 QGKQVAALRKLGFDVIFDTNFTADLTIMEEGTELVKRIKGELDK-------PIPQFTSCC 227
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E ++P +SS KSPQQ G +K + + P +I+ V +MPC KK
Sbjct: 228 PGWVKFVE-YFYPDLIPNLSSAKSPQQMEGTLMKTYYAETKNVDPKKIFSVAIMPCTAKK 286
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E+ R ++ + + +D + P+VD+VLTT E+ +I+ ++F +L + D++
Sbjct: 287 FESQRP----EMATAGKELKDSKV-TPDVDAVLTTRELARMIKRAGIDFNSLPDDQYDQL 341
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT-IRN-SDFREVALEV 353
+ + G ++G ++GG E R A + G+ L T +R +E A+ +
Sbjct: 342 MGSGTGAGAIFG---TTGGVMEAAVRSAYYLITGQQPPSALWGLTPVRGMQGVKEAAVNI 398
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + ++ ++K + F+EVMACP GC GGGQ P+ P +
Sbjct: 399 PGVGDIKVAVISGLANARKVMDQIKEGNAPWAFIEVMACPGGCEYGGGQ--PRASSPPSD 456
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L N L + NP ++ +Y ++L P SEKA++ +HT Y
Sbjct: 457 EVRNRRAASLYTIDANAKLRNSHDNPQIKQVYADFLTSPMSEKAEELLHTTY 508
>gi|488597|gb|AAA85785.1| hydrogenase-1 [Clostridium saccharobutylicum]
Length = 574
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 128/418 (30%), Positives = 206/418 (49%), Gaps = 46/418 (11%)
Query: 58 DCLACSGCITSAET-VMLEKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGIS-P 112
+CL C C+ + + EK +D E L + NK VI++++P R S+ E F +
Sbjct: 189 NCLLCGQCVAACPVGALTEKTHVDRVKEALEDPNK--HVIVAMAPSIRTSMGELFKLGYG 246
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ V KL +++LG +FD + D+T++E EFI R K +N PM +
Sbjct: 247 VDVTGKLYASMRALGFDKVFDINFGADMTIMEEATEFIERVK---------NNGPFPMFT 297
Query: 173 SACPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
S CP W+ +Q+ +Y L +SS KSPQQ GA K + Q G +++ VT+M
Sbjct: 298 SCCPAWV----RQVENYYPEFLENLSSAKSPQQIFGAASKTYYPQISGISAKDVFTVTIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA RE+ +EG I +D+VLTT E+ +I+ +NF LE+
Sbjct: 354 PCTAKKFEADREEMY-----------NEG--IKNIDAVLTTRELAKMIKDAKINFANLED 400
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFRE 348
D + G ++G ++GG E R A + K + +E+ IR +E
Sbjct: 401 EQADPAMGEYTGAGVIFG---ATGGVMEAALRTAKDFVEDKDLT-DIEYTQIRGLQGIKE 456
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+E+ G+ A+ G NL + K+ + +Y F+EVMACP GC+NGGGQ
Sbjct: 457 ATVEIGGENY-NVAVINGAANLAEFMNSGKILEKNYHFIEVMACPGGCVNGGGQPHVSAK 515
Query: 409 QSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ K ++T+ L +N+ KN + ++Y +++ PG KA + +H +Y+
Sbjct: 516 EREKVDVRTVRASVLYNQDKNLEKRKSHKNTALLNMYYDYMGAPGQGKAHELLHLKYN 573
>gi|399890389|ref|ZP_10776266.1| hydrogenase, Fe-only [Clostridium arbusti SL206]
Length = 574
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 198/412 (48%), Gaps = 36/412 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQ 114
+C+ C CI + L EK +D +N K VI++++P RAS+ E F + +
Sbjct: 189 NCILCGQCIIACPVAALTEKSHMDRVKDALNDPEKHVIVAMAPSVRASMGELFNMGFGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E + R K +N PM +S
Sbjct: 249 VTGKIYTALRQLGFNKIFDINFGADMTIMEEATELVQRIK---------NNGPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ AE +L +SS KSPQQ GA K + G P + VTVMPC K
Sbjct: 300 CPGWVRQAENYYPE-LLNNLSSAKSPQQIFGAATKTYYPSITGLDPKNVVTVTVMPCTSK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + ++GL +D+V+TT E+ +I+ + F LE+S +D
Sbjct: 359 KFEADRPEM-----------ENDGLR--NIDAVITTRELAKMIKDAKIPFAKLEDSEVDP 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G ++GG E R A +E ++E+K +R D +E +E+
Sbjct: 406 AMGEYSGAGVIFG---ATGGVMEAALRSAKDFAENAELE-NIEYKQVRGLDGIKEAEVEL 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
GK A+ G N+ + KM + Y F+EVMAC GC+NGGGQ KP K
Sbjct: 462 AGKKY-NVAVINGASNVFKFMESGKMNEKQYHFIEVMACHGGCVNGGGQPHVKPIDLEKV 520
Query: 414 LIKT--LETIYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK+ +Y ++ L N + +Y +++ PG A K +H +Y
Sbjct: 521 DIKSERASVLYNQDAHLTKRKSHNNTALIKMYKDYIGTPGEGLAHKILHFKY 572
>gi|319937321|ref|ZP_08011728.1| HymC protein [Coprobacillus sp. 29_1]
gi|319807687|gb|EFW04280.1| HymC protein [Coprobacillus sp. 29_1]
Length = 582
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/421 (31%), Positives = 209/421 (49%), Gaps = 52/421 (12%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
+C+ C CI L EK+ + + +N K V++ +P RASL E FG+ P+
Sbjct: 190 NCMQCGQCINVCPVGALQEKEEIHNVIEALNNPAKHVVVQTAPAVRASLGEEFGM-PIGT 248
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+V K+ LK LG ++DT+ DLT++E EFI R + + LPM++S
Sbjct: 249 RVTGKMVAALKLLGFDKVYDTNFGADLTIMEEGYEFINRLQ---------NGGVLPMITS 299
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI Y EK+ +L ++SS KSP +GA IK + ++ P IY V++MPC
Sbjct: 300 CSPGWINYCEKEYPD-LLDHLSSCKSPHMMLGAMIKSYYAKQHQLDPKNIYVVSIMPCVA 358
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E R + +DE + +VD+VLTT E+ LI++ VNF L++ D
Sbjct: 359 KKGEKERSQMM----------KDE---MKDVDAVLTTRELGKLIKMFGVNFIDLKDEEFD 405
Query: 294 K-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVAL 351
+ M G ++G +SGG E R L + ++ ++E+ ++R +E +L
Sbjct: 406 QDMFGEYTGAGVIFG---ASGGVMEAALRTVVDVLTNQDLD-NIEYHSVRGQRGLKEASL 461
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
+V G + A+ + + ++ ++K Y F+E+M CP GC+NGGGQ
Sbjct: 462 QV-GDLKVNVAVAHSMTIAKPLLEEIKAGTSKYHFIEIMGCPGGCINGGGQ------SYV 514
Query: 412 KELIKT---------LETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
LI+ + +Y E+ + KN ++ LYDE+LE P S A + +HT
Sbjct: 515 NALIRNSGFDFKGARAKALYDEDRAMPARKSHKNTQIQKLYDEFLEHPNSHIAHELLHTT 574
Query: 461 Y 461
Y
Sbjct: 575 Y 575
>gi|421056163|ref|ZP_15519090.1| hydrogenase, Fe-only [Pelosinus fermentans B4]
gi|421061387|ref|ZP_15523721.1| hydrogenase, Fe-only [Pelosinus fermentans B3]
gi|421067292|ref|ZP_15528788.1| hydrogenase, Fe-only [Pelosinus fermentans A12]
gi|421072858|ref|ZP_15533962.1| hydrogenase, Fe-only [Pelosinus fermentans A11]
gi|392438579|gb|EIW16402.1| hydrogenase, Fe-only [Pelosinus fermentans B4]
gi|392445285|gb|EIW22617.1| hydrogenase, Fe-only [Pelosinus fermentans A11]
gi|392449921|gb|EIW26996.1| hydrogenase, Fe-only [Pelosinus fermentans B3]
gi|392450021|gb|EIW27079.1| hydrogenase, Fe-only [Pelosinus fermentans A12]
Length = 459
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 196/383 (51%), Gaps = 35/383 (9%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+K + ++ +P R SLAE FG+ PL V K+ LK LG ++DT+ + DLT++E
Sbjct: 104 DKKQFSMVQCAPAVRVSLAEEFGM-PLGSLVPGKMVAALKRLGFTRVYDTNFAADLTIME 162
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+E + R + SLPM +S CP W+ + E + ++ ++SS KSPQQ
Sbjct: 163 EGSELVKRITE---------GGSLPMFTSCCPAWVKFVENEYPE-LIDHLSSCKSPQQMA 212
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ K + G E+Y V +MPC KK EA R + + Y+D V
Sbjct: 213 GSMFKTYGASVDGVDAREVYSVAIMPCTCKKFEANRPEM------KSSGYQD-------V 259
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D+VLTT E+ LI+ A++F AL E DK L G ++GV +GG E R A
Sbjct: 260 DAVLTTRELAYLIKEAAIDFNALPEESFDKPLGMYSGAGTIFGV---TGGVMEAAIRTAY 316
Query: 325 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
+ + + IE ++ ++R R+V L+ G LK + G +N+ I+ ++ K D
Sbjct: 317 ELITKEPIE-NVNVTSVRGEQGVRKVTLDT-GALKLKTVVVSGLKNVIPILEDIQRGKAD 374
Query: 384 YQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSL 440
+ F+EVM CP+GC++GGGQ K P G+ E K+ + E +NP ++ +
Sbjct: 375 FHFMEVMTCPAGCISGGGQPKMLLPVDGRKAYENRKSSTYQHDEEQRYRKSHENPEIQDI 434
Query: 441 YDEWLEQPGSEKAKKHVHTEYHP 463
Y ++L +P K+ K +HT Y P
Sbjct: 435 YQKFLGEPLGHKSHKLLHTHYKP 457
>gi|392961982|ref|ZP_10327429.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
gi|392452740|gb|EIW29645.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
Length = 460
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 196/383 (51%), Gaps = 35/383 (9%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+K + ++ +P R SLAE FG+ PL V K+ LK LG ++DT+ + DLT++E
Sbjct: 105 DKKQFSMVQCAPAVRVSLAEEFGM-PLGSLVPGKMVAALKRLGFTRVYDTNFAADLTIME 163
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+E + R + SLPM +S CP W+ + E + ++ ++SS KSPQQ
Sbjct: 164 EGSELVKRITE---------GGSLPMFTSCCPAWVKFVENEYPE-LIDHLSSCKSPQQMA 213
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ K + G E+Y V +MPC KK EA R + + Y+D V
Sbjct: 214 GSMFKTYGASVDGVDAREVYSVAIMPCTCKKFEANRPEM------KSSGYQD-------V 260
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D+VLTT E+ LI+ A++F AL E DK L G ++GV +GG E R A
Sbjct: 261 DAVLTTRELAYLIKEAAIDFNALPEESFDKPLGMYSGAGTIFGV---TGGVMEAAIRTAY 317
Query: 325 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
+ + + IE ++ ++R R+V L+ G LK + G +N+ I+ ++ K D
Sbjct: 318 ELITKEPIE-NVNVTSVRGEQGVRKVTLDT-GALKLKTVVVSGLKNVIPILEDIQRGKAD 375
Query: 384 YQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSL 440
+ F+EVM CP+GC++GGGQ K P G+ E K+ + E +NP ++ +
Sbjct: 376 FHFMEVMTCPAGCISGGGQPKMLLPVDGRKAYENRKSSTYQHDEEQRYRKSHENPEIQDI 435
Query: 441 YDEWLEQPGSEKAKKHVHTEYHP 463
Y ++L +P K+ K +HT Y P
Sbjct: 436 YQKFLGEPLGHKSHKLLHTHYKP 458
>gi|302833840|ref|XP_002948483.1| iron hydrogenase [Volvox carteri f. nagariensis]
gi|300266170|gb|EFJ50358.1| iron hydrogenase [Volvox carteri f. nagariensis]
Length = 497
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 211/439 (48%), Gaps = 74/439 (16%)
Query: 76 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDT 134
KQ+ E + K +I ++P R +++E FG++P +L L+ LG +FDT
Sbjct: 76 KQAFAELDKPKAERKVMIAQVAPAVRVAISESFGLAPGATTPGQLAESLRCLGFDMVFDT 135
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILP 192
DLT++E E ++R Q+Q S LPM +S CPGWI EK SY ++P
Sbjct: 136 LYGADLTIMEEGTELLSRL-QAQLEAHPHSEEPLPMFTSCCPGWIALLEK---SYPELIP 191
Query: 193 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 252
Y+SS KSPQ +GA +K ++ +K G P +I V++MPC K+ EA R+ F
Sbjct: 192 YVSSCKSPQMMLGAMVKTYLAEKKGISPSDISMVSIMPCVRKQGEADRDWFC-------- 243
Query: 253 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 312
G + +VD V+TT E+ ++++ + +N L E D+ L + G ++G ++
Sbjct: 244 ---SGGAGVRDVDHVITTAELGNILKERNINLPELPEGGWDEPLGSGSGAGVVFG---TT 297
Query: 313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD----------------FREV------- 349
GG E R A + + + + L +R D F E+
Sbjct: 298 GGVMEAALRTAYELVTQQPLP-RLNLSEVRGMDGIKETEIKMVPPPGSKFAELVAARAAA 356
Query: 350 -----------ALEVEGKT-----------LLKFALCYGFQNLQNIVRKVKMRKCDYQFV 387
A++ +G + L+ A+ G N + ++ K++ +C Y FV
Sbjct: 357 KAMDEAAASAGAIKWDGGSNFTADDGAKGITLRVAVANGLGNAKKLLTKMQTGECKYDFV 416
Query: 388 EVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIY--LENVMLADPFKNPLVRSLYDEW 444
E+MACPSGC+ GGGQ P + K++ +K + +Y E + +NP V+ Y+++
Sbjct: 417 EIMACPSGCVGGGGQ----PRSTDKQVAVKRQQALYDLDERATIRRSHENPAVQKAYEDF 472
Query: 445 LEQPGSEKAKKHVHTEYHP 463
L +P S KA +HT Y P
Sbjct: 473 LGEPNSHKAHDLLHTHYVP 491
>gi|373457613|ref|ZP_09549380.1| hydrogenase, Fe-only [Caldithrix abyssi DSM 13497]
gi|371719277|gb|EHO41048.1| hydrogenase, Fe-only [Caldithrix abyssi DSM 13497]
Length = 573
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/419 (31%), Positives = 214/419 (51%), Gaps = 47/419 (11%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI- 110
+++ C+ C C+ T L E+ SL E + N K V++ +P +LAE FG+
Sbjct: 184 LNVSSCIGCGQCVLVCPTGALRERSSLKEVTDALQNPEKFVVVQHAPAVSVTLAEEFGLK 243
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ + L L+ LG +FDT+ S DLT++E +E + R + + S+PM
Sbjct: 244 AGSDADRLLVNALRRLGFDRVFDTAFSADLTIMEEASELVERLQ---------NGGSIPM 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S PGW+ + E+ +I P +S+ KSPQQ +GA IK+ ++ G PD+I+ V+VMP
Sbjct: 295 MTSCSPGWVKFVEQFYPEFI-PNLSTCKSPQQMMGAVIKNIFAREQGISPDKIFSVSVMP 353
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA R +F Y D +D+VLTT E++ LI++ + F++L+
Sbjct: 354 CTAKKFEAERPEF------SHNGYAD-------IDAVLTTRELIRLIRMYGIEFDSLKPD 400
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-----VIEGHLEFKTIRNSD 345
D G L+ G +GG E R A + GK V E K IR +
Sbjct: 401 EPDLPFGKRSTAGKLF---GGTGGVMEAALRTAYFLITGKEPQKIVFEEVRGLKGIREAR 457
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
+ +E L A+ G QN + ++ ++K + D F+EVM CP GC+ GGGQ
Sbjct: 458 VKIADIE------LGVAVANGIQNAKALLEQIKAGRDDLHFIEVMTCPGGCVGGGGQ--- 508
Query: 406 KPGQSPKELIKT-LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + I+T L+ +Y N + +NPL++ LYD +LE+P S ++ + +HT+Y
Sbjct: 509 -PFDTCPASIRTRLQALYQIDRNEAVRASHQNPLIQELYDRYLERPLSHRSHELLHTKY 566
>gi|19547863|gb|AAK60409.1| hydrogenase [Neocallimastix frontalis]
Length = 636
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 217/436 (49%), Gaps = 44/436 (10%)
Query: 54 ISLKDCLACSGC--ITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI- 110
++ C+ C C + + + +D K K V+ S +P R + AE F
Sbjct: 227 MNFTKCVECGQCSQVCPVGAITARTEVVDVLRHLDTKRKVVVCSTAPAIRVAPAEEFSTE 286
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ K+ L+ LG IFDT+ S DLT++E E I R + PM
Sbjct: 287 ADFDFTGKMVAGLRKLGFDYIFDTNFSADLTIMEEGTELIDRLN---------NGGKFPM 337
Query: 171 LSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
+S CPGWI EK SY + +SS KSPQQ IGA IK + +KLG ++I HV++
Sbjct: 338 FTSCCPGWINMVEK---SYPELSDNLSSCKSPQQMIGAVIKSYFAKKLGLSTEDIIHVSI 394
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA R +FV + +G + P++D V+TT E+L L++LK +N L
Sbjct: 395 MPCTAKKGEARRPEFVQK--------GKDGKDYPDIDYVITTRELLTLLKLKKINPAELP 446
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD 345
+ D L G+L+GV +GG E R A+ + G +E + E K IR D
Sbjct: 447 DDKFDSPLGIGSSAGNLFGV---TGGVMEAAIR-TAQVITG--VENPIPLGELKAIRGLD 500
Query: 346 ---FREVALEV-EGKTL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
V L+ +GK + ++ A+ G N+Q + K+K ++ ++ F+E+M CP GC+NGG
Sbjct: 501 GIKAANVPLKTKDGKEVSVRAAVVSGGANIQKFLEKIKNKELEFDFIEMMMCPGGCINGG 560
Query: 401 GQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GQ K P+ + K ++ +Y + L +NP + +Y +L +P S A + +H
Sbjct: 561 GQPK---SADPEIVAKKMQRMYTMDDQAKLRLCHENPEIIDVYKNFLGEPNSHLAHELLH 617
Query: 459 TEYHPVVKSITAQLHN 474
T Y+ K+I H+
Sbjct: 618 THYNDRSKTIHDMGHH 633
>gi|339442556|ref|YP_004708561.1| hypothetical protein CXIVA_14930 [Clostridium sp. SY8519]
gi|338901957|dbj|BAK47459.1| hypothetical protein CXIVA_14930 [Clostridium sp. SY8519]
Length = 576
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 217/432 (50%), Gaps = 40/432 (9%)
Query: 41 VSTSSKQQAEPVKI-SLKD--CLACSGCITSAETVML-EKQSLDEFLSNINKG-KAVIIS 95
+ T S+ + + ++ L+D C C CIT L E+ + + + ++ K ++
Sbjct: 167 IGTGSRAKVDVREVYDLEDSKCALCGQCITHCPVGALKERDDVTDVIHALDDPEKVTVVQ 226
Query: 96 LSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
++P R + E FG++P + ++L+ LK LG +FDT S DLT++E +EF+ R K
Sbjct: 227 IAPSIRTAWGEMFGMTPEEASMERLSATLKFLGFDYVFDTDFSADLTIMEEGSEFVQRLK 286
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+ PM +S CPGW+ + + Y+ +S+ KSPQQ GA IK ++ Q
Sbjct: 287 DGKRD--------FPMFTSCCPGWVRFLKAHYPEYV-DNLSTAKSPQQMFGAIIKSYVAQ 337
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
G P +Y V++MPC KK E A ++ P+VD+VLT E++
Sbjct: 338 IKGIDPKNVYSVSLMPCLAKKHECAI------------PVMNDACGDPDVDTVLTNRELV 385
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
L++ + VN LEE PLD + G+++G ++GG E R A + G+ +
Sbjct: 386 RLLRSQHVNPGLLEEEPLDDPMGFGSGAGNIFG---ATGGVMEAALRSAYYLVTGENPDP 442
Query: 335 HLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
F+ +R D ++E E+ G TL K A+ G N ++ ++ K Y FVEVMACP
Sbjct: 443 D-AFRAVRGMDGWKEAEFEIAGMTL-KIAVVNGLANADKLLTALRKGKVQYDFVEVMACP 500
Query: 394 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD---PFKNPLVRSLYDEWLEQPGS 450
GC+ GGGQ P KE+ + I + D +NP + +Y E+L +P S
Sbjct: 501 GGCVGGGGQ----PFYDGKEMAASRAPILYAFDQITDLRFSHENPSITKVYSEYLGEPLS 556
Query: 451 EKAKKHVHTEYH 462
EK+ +HT++H
Sbjct: 557 EKSHHLLHTDHH 568
>gi|134299511|ref|YP_001113007.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134052211|gb|ABO50182.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfotomaculum reducens MI-1]
Length = 659
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 176/338 (52%), Gaps = 31/338 (9%)
Query: 59 CLACSGCITSAETVML--EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
C+ C CI T L S+ E + I + K V+ ++P RA+L E FG+ + V
Sbjct: 189 CINCGQCIAVCPTGALTSNSSSIQEIWAAIRDPKKTVVCQIAPAPRAALGEEFGLGSVDV 248
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ T L+ +G +FDT + D+T IE NEF++R + + +LP+ +S C
Sbjct: 249 TKKVVTALRKIGFDKVFDTVFTADMTTIEESNEFLSRLVKGE---------NLPLFTSCC 299
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ YAE + +L +SS +SPQQ GA +K ++LG P +++ V+VMPC KK
Sbjct: 300 PGWVKYAE-EFHPELLSNLSSCRSPQQMFGAVLKKKYAKELGIAPQDMFVVSVMPCTAKK 358
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R +F + E Y +VD+VLTT E +I+ + F LEES D+
Sbjct: 359 YEAKRPEF-----TTEGAY--------DVDAVLTTVEAARMIKEAGIIFNTLEESEFDQP 405
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
+ G L+ G++GG E+V R+ A L EG ++ + R + ++A G
Sbjct: 406 MQQATGSGVLF---GTTGGVMESVIRYVAGKLLNA--EGRVDVEFTRGMEDTKIASINVG 460
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
L A+ G + +++K++ + D Q VEVMACP
Sbjct: 461 DNKLNLAVVNGLSATEALIQKIQSGELDVQAVEVMACP 498
>gi|419760455|ref|ZP_14286734.1| hydrogenase [Thermosipho africanus H17ap60334]
gi|407514558|gb|EKF49373.1| hydrogenase [Thermosipho africanus H17ap60334]
Length = 583
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 206/411 (50%), Gaps = 33/411 (8%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQ 114
+C++C C + E + L ++K K ++ +P R ++ E FG+ P
Sbjct: 187 NCISCGQCAYLCPVGAIYETPDWRKVLKILDKKDNKILVAQTAPSVRVAIGEEFGMEPGS 246
Query: 115 VFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ ++ LG +FDT+ + DLT++E E I R K PM +S
Sbjct: 247 VSTGKMVAAIRRLGFDYVFDTNFAADLTIMEEGTELIGRIKDG---------GPFPMFTS 297
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGWI EK+ +I SS KSPQQ + +K + +K+G P++I V++MPC
Sbjct: 298 CCPGWINLLEKEYPEFI-NNASSAKSPQQMMSPIVKTYFAKKIGVDPEDIIMVSIMPCTA 356
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E R Q++ ++G EI D V+TT E+ LI++K +NF L++ D
Sbjct: 357 KKDEITR--------PQQKIKLEDGREIKTTDYVITTRELAKLIKMKQINFIGLDDEDFD 408
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
L ++GV +GG E R A + + K + LEF +R D RE ++
Sbjct: 409 NPLGTSTGAAAIFGV---TGGVMEAALRTAYELITNKKLP-KLEFNAVRGLDGIRETEID 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+EGK L K A+ +G N++ ++ ++ Y F+E+MACP GC+ GGGQ K P
Sbjct: 465 IEGKKL-KVAIAHGTANVKKLLDDIRDGVRYYDFIEIMACPGGCIGGGGQPK---SLDPD 520
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K IY E L +NP ++ LY+E+LE+P S A + +HT Y
Sbjct: 521 ILKKRASAIYSIDELSTLRRSHENPDIQKLYEEFLEKPNSHIAHELLHTYY 571
>gi|402571795|ref|YP_006621138.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
gi|402252992|gb|AFQ43267.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
Length = 525
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 203/412 (49%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDE-FLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E+ +++ F + + V++ +P +R L E FG+ V
Sbjct: 114 CVNCGQCIQWCPSGAISERDDINKVFKALADPNVTVVVQTAPATRIGLGEEFGMPVGTNV 173
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG +FDT+ + DLT++E E + R + +P ++S C
Sbjct: 174 QGKQVAALRKLGFDVVFDTNFTADLTIMEEGTELVKRVTGEL-------HHPIPQMTSCC 226
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E ++P +SS KSPQQ GA IK + +K P +I+ V++MPC KK
Sbjct: 227 PGWVKFVE-YFYPELIPNLSSAKSPQQMEGALIKTYFAEKKEVDPKKIFSVSIMPCTAKK 285
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R +++S + D + P+VD VLTT E+ +I+ ++F +L E DK+
Sbjct: 286 FECQRP----EMNSASKELNDSNVS-PDVDVVLTTRELARMIKRAGIDFASLPEEEYDKL 340
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R A + G+ L +R +E A+ +
Sbjct: 341 MGTGTGAGVIF---GTTGGVMEAAVRSAYFLITGQQPPAALWNLTPVRGMQGVKEAAVNI 397
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + ++ ++K + F+E+MACP GC GGGQ P+ P +
Sbjct: 398 PGVGDVKVAVISGLANARKVMDQMKAGNAPWAFMEIMACPGGCEYGGGQ--PRASSPPSD 455
Query: 414 LIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L N+ L + NP ++ +Y ++L P SEKA++ +HT Y
Sbjct: 456 EDRNRRAASLYNIDAKAKLRNSHDNPEIKQIYADFLTAPMSEKAEELLHTHY 507
>gi|401842923|gb|EJT44923.1| NAR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 493
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/515 (29%), Positives = 242/515 (46%), Gaps = 91/515 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK------NPDKPQVSTSSKQQAEPVKISLKD 58
S L DL+DFI+P+ CV + + K N D ++ Q E V I+L D
Sbjct: 1 MSALLSEADLNDFISPALACVKPTQVSGGKQKNNNVNADGEYEVSTEPDQLEKVSITLSD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPL 113
CLACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA ++G++
Sbjct: 61 CLACSGCITSSEEILLSSQSHSVFLENWGKLSQQQDKFLVVSVSPQCRLSLAHYYGLTLE 120
Query: 114 QVFKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
L F + K + T R +++ + + +A +Q Q++ +R P+LS
Sbjct: 121 AADLCLMNFFQRQFHCKYMVGTEMGRIVSINKTVEKIVANKRQKQDAGVDRK----PLLS 176
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
+ CPG++ Y EK + P + +VKSPQQ G+ IK+ + LG + YH+++MPC+
Sbjct: 177 AVCPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIKNTF-ESLGVASESFYHLSLMPCF 234
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EES 290
DKKLEA+R + + D+G +D V+T EV+ ++Q +++F + E++
Sbjct: 235 DKKLEASRPESL-----------DDG-----IDCVITPREVVTMLQELSLDFSSFITEDT 278
Query: 291 PLDKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNS 344
L L+ D H + G+ GGYA K G V+EG RNS
Sbjct: 279 ALYGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAMQKLHPGSQMLVLEG-------RNS 331
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRKCDY------- 384
D E L+ + + GF+N+QN+VRK+ +RK
Sbjct: 332 DIVEYRLQQSDDIIAAASELSGFRNIQNLVRKLTSATGPERKRNITALRKRRMGPNANSR 391
Query: 385 ---------------QFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVML 428
++EV ACP C+NGGG + + K+L++ L + + + +
Sbjct: 392 KMTAATAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQALNKRHGQELEM 451
Query: 429 ADP------FKNPLVRSLYDEWLEQPGSEKAKKHV 457
DP + +R L E++ P + A+K +
Sbjct: 452 VDPLALGPKLEEAAMRPLSLEYIFAPVKQAAEKDL 486
>gi|435854933|ref|YP_007316252.1| hydrogenase, Fe-only [Halobacteroides halobius DSM 5150]
gi|433671344|gb|AGB42159.1| hydrogenase, Fe-only [Halobacteroides halobius DSM 5150]
Length = 575
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 208/413 (50%), Gaps = 40/413 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C C+T + E +D+ + ++ + V++ +P +A++ E FG+ P V
Sbjct: 190 NCANCGQCVTVCPVGALTEVSEVDKVWQALEDENQHVVVQTAPSIQATMGEPFGMEPGTV 249
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
KL T L LG +F T + DLT++E +E +AR +D+ SN+ P ++S
Sbjct: 250 VTGKLATALNQLGFDRVFSTDFAADLTIMEEGSELLARL------EDKESNT--PQITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + E +L +S+ KSP K + + ++IY V++MPC K
Sbjct: 302 CPGWVKFCEHNY-PELLDNLSTAKSPMSMFSPLAKTYYAETKDLEAEDIYTVSIMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R + +D G + + D+VLTT E+ +I+ + F LE++ D+
Sbjct: 361 KFEKERGEL-----------QDSGTQ--DTDAVLTTRELARMIKEAGIKFAELEDTEYDR 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
M+ G ++G ++GG E R + L + + L+ +R +E A+E+
Sbjct: 408 MMGEATGAGTIFG---TTGGVMEAALRTVYEKLTDEELP-RLDLDEVRGLKGVKETAVEI 463
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ +G N +++ +VK + +Y F+EVMACP+GC+ GGGQ P + KE
Sbjct: 464 -GNDTVKVAVAHGLGNAADLLDQVKAGEANYDFIEVMACPAGCVGGGGQPYP----ASKE 518
Query: 414 LIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
IK L N+ +D + NP ++ LY+++L P SEKA +HT Y
Sbjct: 519 -IKAKRGQGLYNIDQSDKIRKSHENPEIKKLYEDFLGAPLSEKAHHLLHTNYQ 570
>gi|259149127|emb|CAY82369.1| Nar1p [Saccharomyces cerevisiae EC1118]
gi|365763474|gb|EHN05002.1| Nar1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 488
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 229/479 (47%), Gaps = 80/479 (16%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK + P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R + + D+G +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRPESL-----------DDG-----IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMIVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 -------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLADPF 432
++EV ACP C+NGGG + + K+L++TL + E + + DP
Sbjct: 392 AAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVDPL 450
>gi|406883036|gb|EKD30694.1| hypothetical protein ACD_77C00487G0004 [uncultured bacterium]
Length = 596
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 213/422 (50%), Gaps = 40/422 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C C C+ T ++EK ++E + I +K K V++ +P R L E G P +V
Sbjct: 194 CTNCGQCVNHCPTGALVEKNYIEEVWNAIADKTKHVVVQTAPAVRVGLGEELGYEPGTRV 253
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ LK LG ++ DT + DLT++E E + R K + D+ N LPM +S
Sbjct: 254 TGKMVAALKRLGFDAVMDTDFTADLTIMEEGTELLTRLKSALV--DKNPNIKLPMATSCS 311
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E +Y L ++S+ KSPQQ GA +K + + PD+I V++MPC KK
Sbjct: 312 PGWIKYIEHMYPNY-LDHLSTCKSPQQMFGALVKTYYAKARNLDPDKIVSVSIMPCTAKK 370
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + YRD +D VLTT E+ +I+ ++F L+++ D++
Sbjct: 371 FEANRPEM------HDSNYRD-------IDYVLTTRELAIMIKQAGIDFLKLKDANFDRL 417
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A + + G+ + +L +R ++ RE +++
Sbjct: 418 MGESTGAGVIF---GATGGVMEAALRTAYEIVTGREVPFENLNITPVRGTEGVREATVKI 474
Query: 354 EGKTL----------LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
E KTL LK A+ +G N + ++ + + Y F+E MACP GCL GGGQ
Sbjct: 475 E-KTLKEWSFLEGVELKCAIAHGLVNAKKVMDSIVSGESHYHFIEFMACPGGCLGGGGQP 533
Query: 404 KPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P SP+ K E IY E+ + L NP V +Y ++L P EK+ +HT+Y
Sbjct: 534 IP---TSPEIRAKRAEAIYAEDEGMPLRKSHLNPEVIKIYKDFLITPLGEKSHHLLHTKY 590
Query: 462 HP 463
P
Sbjct: 591 TP 592
>gi|261333200|emb|CBH16195.1| iron-containing hydrogenase, putative [Trypanosoma brucei gambiense
DAL972]
Length = 475
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 217/443 (48%), Gaps = 51/443 (11%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
+ FS +L + + D+IAPS+ C++ K + D + + E VKI+L+DCLA
Sbjct: 3 ANNFSASLMLAGM-DYIAPSEACILPTKLQGGTSDDSVKRHGAGN---EAVKITLQDCLA 58
Query: 62 CSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
CSGC+T+AET+++ QS +E L + ++ + +++S QS AS+A + F +
Sbjct: 59 CSGCVTTAETILITSQSREELLKDRALDPTRPFFVTISDQSAASIAAFLKTDVQKAFHIV 118
Query: 120 TTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
+ F ++ L + + D + +++ + E+ R + + LP++ SACPGW
Sbjct: 119 SGFFRAVLNARYVSDLHWALRISVEKTAEEYCRRVRCER--------ERLPLIVSACPGW 170
Query: 179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
+CY EKQ G+ ILP + V SPQ G K I Q + HV+V PC+D+KLEA
Sbjct: 171 VCYCEKQ-GAAILPLLCPVMSPQGIAGCYSKTLIPQ--------MCHVSVQPCFDRKLEA 221
Query: 239 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK---- 294
AR+ E Y D VL+T E+LD + V+ ++PLD
Sbjct: 222 ARDGSSV----SGERY---------TDFVLSTQELLDW--MLEVDPSLPWQAPLDSDLEP 266
Query: 295 --MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVAL 351
+L + + SGGY AA+ L G ++ + ++ RN++
Sbjct: 267 LPILPPEEPKRSFAATMEGSGGYHRYAMHRAARELHGLELAPRDIHYEMKRNANHHLTTS 326
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMR---KCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ F + YGFQ +QN VR +K + Y F+E+MACP GCLNGGGQ +
Sbjct: 327 PSNPGEV--FCVAYGFQQIQNTVRGIKRKLASVASYTFIELMACPEGCLNGGGQARNGTT 384
Query: 409 QSPKELIKTLETIYLENVMLADP 431
QS E ++ ++ + + P
Sbjct: 385 QSHVETTAAAKSAFISYISGSQP 407
>gi|373119594|ref|ZP_09533689.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
gi|371662223|gb|EHO27430.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
Length = 583
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/410 (32%), Positives = 212/410 (51%), Gaps = 34/410 (8%)
Query: 58 DCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C + ++E +E + I N K VI+ ++P R L + FG+ V
Sbjct: 191 DCVLCGQCSLVCPVGAIVETDYTNEVTAAIQNPSKHVIVQVAPSVRVGLGDEFGMEAGAV 250
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ T L+ LG +FDT+ S DLT++E +E + R R LPM++S
Sbjct: 251 VTGKMVTALRMLGFDKVFDTNFSADLTIMEEGSELLKRI---------REGGKLPMITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y EK ++ ++S+ KSPQ GA K + QK+G+ P ++ V+VMPC K
Sbjct: 302 SPGWVTYLEKH-HPELIGHLSTAKSPQAMFGAVAKTYYAQKMGWDPHDVVSVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA+R + + Y+D VD VLTT E+ LI+ ++ L ES D
Sbjct: 361 KYEASRPEL------GRDGYQD-------VDYVLTTRELAKLIRYVGLDLSVLPESEFDS 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN--SDFREVALE 352
L G ++G ++GG E R A + GK + LEF +R + +E ++
Sbjct: 408 PLGTGSGAGAIFG---ATGGVMEAALRTAYELYTGKTLP-RLEFDAVRGDINAIKEATID 463
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++G T LK A+ G +N + ++R+V+ + DY F+E+MACP GC+ GGGQ
Sbjct: 464 LDG-TPLKVAVTNGLKNAEELIRRVERGEADYIFIEIMACPGGCIGGGGQPIGTNNAVRD 522
Query: 413 ELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
I+ L I ++ L +NP ++++Y+E+ P S+++ + +HT YH
Sbjct: 523 ARIQALYEID-RSLPLRKSHENPEIKTIYEEFFGAPLSQRSHELLHTHYH 571
>gi|407849363|gb|EKG04128.1| hydrogenase, putative [Trypanosoma cruzi]
Length = 474
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 220/439 (50%), Gaps = 62/439 (14%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA-----EPVKISL 56
+ FS +L + + D+IAPS+ C + P + Q Q E VKI+L
Sbjct: 3 TSNFSASLMLAGM-DYIAPSEACTL---------PTRLQRGADGSVQRHASGNEVVKITL 52
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFL----SNINKGKAVIISLSPQSRASLAEHFGISP 112
+DCLACSGC+T+AET+++ QS E + S ++ + ++++S QS AS+A H +
Sbjct: 53 QDCLACSGCVTTAETILVTSQSRAEIIKVRASELD--RPFLVTISDQSAASIAAHLKVDS 110
Query: 113 LQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
+ F ++ F ++ L + + D ++ +++ + E+ R + +++ LPM+
Sbjct: 111 RRAFHIISGFFRTVLKSQYVSDLRWAQHISVEKTAQEYCHRLQHARD--------KLPMI 162
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
SACPGW+CY EKQ GS ILP + V SPQ G K Q + H++V PC
Sbjct: 163 VSACPGWVCYCEKQ-GSAILPLLCPVMSPQGIAGCYAKRVFPQ--------LCHISVQPC 213
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL--KAVNFEALEE 289
+D+KLEAAR+ +D E D VL+T E+++ + ++ +EA
Sbjct: 214 FDRKLEAARDT---SIDGNERY----------TDFVLSTQELMEWMMETDASIPWEAPLN 260
Query: 290 SPLDKMLTNVDDEGH--LYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSDF 346
S + + + E L SGGY ++ A+ + + ++ RN++
Sbjct: 261 SSFEFLPAPLLKESSSVLAATMEGSGGYHRFAMQYVAENVHNLSFSPDDILYEMKRNAN- 319
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---DYQFVEVMACPSGCLNGGGQI 403
VA + + + YGFQ++QNIVR +K + Y F+E+MACP GCLNGGGQ+
Sbjct: 320 HHVATSPSNPGEV-YCVAYGFQHIQNIVRGLKRKLASVSSYTFIELMACPDGCLNGGGQV 378
Query: 404 KPKPGQSPKELIKTLETIY 422
+ S E I ++ I+
Sbjct: 379 RSGNLTSNLETIAAVKAIF 397
>gi|374581149|ref|ZP_09654243.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
gi|374417231|gb|EHQ89666.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
Length = 527
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C CI + + E+ +D+ L I+ V++ +P +R L E FG+ V
Sbjct: 116 CVNCGQCIQWCPSGAISERDDIDKVLKAISDPNITVVVQTAPATRIGLGEEFGMPVGTNV 175
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG IFDT+ + DLT++E E + R K + +P L+S C
Sbjct: 176 QGKQVAALRKLGFDVIFDTNFTADLTIMEEGTELVKRVKGELKM-------PIPQLTSCC 228
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E ++P +S+ KSPQQ G +K + + P +I+ V +MPC KK
Sbjct: 229 PGWVKFVE-YFYPDLIPNLSTAKSPQQMEGTLMKTYYAETNNVDPKKIFSVAIMPCTAKK 287
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + V S + D + P+VD VLTT E+ +I+ ++F +L + D++
Sbjct: 288 FECQRPEMV----SARKDLNDSNVS-PDVDVVLTTKELARMIKRAGIDFTSLPDDQYDQL 342
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT-IRN-SDFREVALEV 353
+ + G ++G ++GG E R A + G+ L T +R +E A+ +
Sbjct: 343 MGSGTGAGAIFG---TTGGVMEAAVRSAYYLITGQQPPSALWALTPVRGMQGVKEAAVNI 399
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + ++ +++ + F+EVMACP GC GGGQ P+ P +
Sbjct: 400 PGVGDIKVAVISGLANARMVMDQIRAGNTSWAFIEVMACPGGCEYGGGQ--PRASSPPSD 457
Query: 414 LIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L + L + NP ++ +Y ++L P SEKA++ +HT Y
Sbjct: 458 ADRNRRAASLYTIDAKAKLRNSHDNPQIKQVYADFLTSPMSEKAEELLHTHY 509
>gi|238878683|gb|EEQ42321.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 605
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 156/520 (30%), Positives = 228/520 (43%), Gaps = 136/520 (26%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-------------------------VSLKKATFKNP--- 36
S L DL+DFI+P C+ V ++ + NP
Sbjct: 1 MSALLSADDLNDFISPGVACIKPLASSSTNTTTTTNTTDSYNENGEVEIQIDSQGNPLEI 60
Query: 37 ---DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFL----SNINKG 89
D Q T+ + P +ISL DCLACSGCITSAE V++ + S E + S
Sbjct: 61 SKIDDKQFQTN---KLTPAQISLADCLACSGCITSAEEVLVAQHSHQELIKALQSQKETN 117
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNE 148
K ++S+S QSRASLA + +S + K L F++ +G I TS R L+LI E
Sbjct: 118 KVFVVSISHQSRASLAMAYNVSIENMDKCLIDLFIRQMGFTYIVGTSLGRKLSLINEAKE 177
Query: 149 FIARYKQSQESDDERSNSSL-PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
I R +S + S+SS P+LSS CPGW+ YAEK +I+P +S+VKSPQQ G
Sbjct: 178 IINRKTKSGGTGGIDSDSSSGPILSSICPGWVLYAEKT-HPFIIPKMSTVKSPQQITGCL 236
Query: 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 267
+K+ L +IYH+++MPC+DKKLE+AR + V++ + +EE + +P+VD V
Sbjct: 237 LKNLTSNSLNIEKSKIYHLSIMPCFDKKLESARPE-VYEEEEEEEEEDKALVSVPDVDCV 295
Query: 268 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG-------------------- 307
+T E++ L LEE P +++ + L G
Sbjct: 296 ITAKELITL----------LEECPQYQLIPPTLPQEELIGGGCLSMTEIYKQYAPPNWPF 345
Query: 308 --------VAGSSGGYAETVFRHAAKTLFGKVIEGH---LEFKTIRNSDFREVALEVEGK 356
+SGGYA L K +G+ + RN D E+ L K
Sbjct: 346 IEISWSNDSGSASGGYAYNYLTIYRNDLILKGYDGNKFTINLINGRNPDIYEMRLMYNDK 405
Query: 357 -TLLKFALCYGFQNLQNIVRKVK------------------------------------- 378
L A+ GF+N+QN+VRK+K
Sbjct: 406 EKLASAAVVNGFRNIQNLVRKLKPNTGKTTNTTTTTTKSKVNPLAARRRARMANNRGKPE 465
Query: 379 ---MRKCDYQFVEVM------------ACPSGCLNGGGQI 403
+ + Q +E++ ACP+GC+NGGGQI
Sbjct: 466 TKSTSEVNSQEMEIVADASKVDYVEIMACPNGCINGGGQI 505
>gi|451821180|ref|YP_007457381.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451787159|gb|AGF58127.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 562
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 201/420 (47%), Gaps = 58/420 (13%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI- 110
I +C++C C T ++ + + ++ ++N K V++ ++P R L G
Sbjct: 185 IGHSNCVSCGQCAAVCPTGAIVVRSNTEKLWQDLNNPKKRVVVQIAPAVRVGLGTQLGEE 244
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ L+ +G IFDTS DLT+IE NEF+++ + +N +LP+
Sbjct: 245 DGRNAMGKMAAALRRMGFDKIFDTSVGADLTVIEETNEFVSKLQ---------NNEALPL 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD--EIYHVTV 228
+S CP W+ YAEK ++ +SS KSP A +K H +R D E+ V +
Sbjct: 296 FTSCCPAWVNYAEKTY-PELMKNVSSCKSPMGMFAAVLKEH------YREDDRELVSVAI 348
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EAARE+F +++G +P+VD V+TT E ++++ + F LE
Sbjct: 349 MPCSAKKFEAAREEF-----------KNDG--VPDVDYVVTTQEFVNMVNESGIAFSELE 395
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR-----HAAKTLFGKVIEGHLEFKTIRN 343
LD+ + G ++GV +GG E V R L EG + ++
Sbjct: 396 PEALDRPFQSCSGAGVIFGV---TGGVTEAVIRKVLSEQPVPALRSFAFEGVRGMEGVKE 452
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ + E+ K A+ G +N NI++KV+ + Y FVEVMACP GC+NG GQ
Sbjct: 453 TTINALDREI------KIAIVSGLKNADNIIKKVRAGEAHYDFVEVMACPGGCINGAGQ- 505
Query: 404 KPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P +E +K +Y + M ++ NPL+ SLY L+ +K + +H Y
Sbjct: 506 ---PFAKAEEKVKRGAQLYKVDKMKSISRSDDNPLMDSLYSGILK----DKTHELLHVHY 558
>gi|168186810|ref|ZP_02621445.1| hydrogenase [Clostridium botulinum C str. Eklund]
gi|169295206|gb|EDS77339.1| hydrogenase [Clostridium botulinum C str. Eklund]
Length = 579
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 194/413 (46%), Gaps = 36/413 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ L E ++ L I N K VI++++P RAS+ E F +
Sbjct: 195 NCLLCGQCVNICPVAALSETPHINRVLEAIDNPKKHVIVAIAPSVRASIGEAFNMGYGTD 254
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG IFD + DLT++E NE + R K +N PM +S
Sbjct: 255 VTGKLYTVLRQLGFDKIFDLNFGADLTIVEEANELVERIK---------NNGPYPMFTSC 305
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ AE + +LP +SS KSPQQ GA K + + + P +I+ VTVMPC K
Sbjct: 306 CPAWVRQAENYFKN-LLPNLSSTKSPQQIFGAASKTYYPKLINLDPKDIFTVTVMPCTAK 364
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E+ R+ + I +D+VLT E++ +I+ ++F LE+ D
Sbjct: 365 KFESQRDGMDIK-------------GISSIDAVLTARELVKIIKDNKIDFPNLEDGVQDP 411
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G L+ G++GG E R A + L K + ++E+K +R +E + +
Sbjct: 412 AMGEYSGAGALF---GTTGGVMEAAIRTAKELLENKSL-NNIEYKEVRGFKGIKETTVTI 467
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
K A+ G N+ + + K Y F+EVM+C GC+NGGG P +
Sbjct: 468 NDKE-YNIAVINGSSNVFKFMNSDMINKKQYHFIEVMSCEGGCINGGGHPHVTPSERETV 526
Query: 414 LIKTLETIYLENVMLADP----FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K L L N L P +N + +YD ++ +PG+ A + H Y+
Sbjct: 527 DYKKLRASVLYNKDLNLPKRKSHENTAIIKMYDNFIGKPGNHLAHEIFHFSYN 579
>gi|6324089|ref|NP_014159.1| Nar1p [Saccharomyces cerevisiae S288c]
gi|1730836|sp|P23503.2|NAR1_YEAST RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|1183974|emb|CAA93358.1| N1114 [Saccharomyces cerevisiae]
gi|1302274|emb|CAA96145.1| unnamed protein product [Saccharomyces cerevisiae]
gi|51013435|gb|AAT93011.1| YNL240C [Saccharomyces cerevisiae]
gi|207341882|gb|EDZ69818.1| YNL240Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272369|gb|EEU07352.1| Nar1p [Saccharomyces cerevisiae JAY291]
gi|285814425|tpg|DAA10319.1| TPA: Nar1p [Saccharomyces cerevisiae S288c]
Length = 491
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 230/482 (47%), Gaps = 83/482 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK ++P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLVPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R + + D+G +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRPESL-----------DDG-----IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMIVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 ----------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLAD 430
++EV ACP C+NGGG + + K+L++TL + E + + D
Sbjct: 392 AAATAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVD 451
Query: 431 PF 432
P
Sbjct: 452 PL 453
>gi|444315436|ref|XP_004178375.1| hypothetical protein TBLA_0B00110 [Tetrapisispora blattae CBS 6284]
gi|387511415|emb|CCH58856.1| hypothetical protein TBLA_0B00110 [Tetrapisispora blattae CBS 6284]
Length = 481
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 236/479 (49%), Gaps = 88/479 (18%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+PS CV ++ K +N D ++ E V I+L+DCL
Sbjct: 1 MSALLSEADLNDFISPSLACVKPTVINKSKVEEQNKDGEIEVGKEPEELEKVSITLQDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK----GKAVIISLSPQSRASLAEHFGISPLQVF 116
AC GCITS+E ++L +QS FL++ +K + +++S SPQ+R SLA ++G++ LQ F
Sbjct: 61 ACVGCITSSEEILLSRQSHSVFLNDWSKLEDNKRELVVSASPQTRLSLANYYGLT-LQKF 119
Query: 117 KKL-TTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ F KS K + T R++T+ + N+ + + K+ D++ P L S
Sbjct: 120 DIIFVNFFKSHFKAKFVVGTQLGRNVTIRQTNNKLM-KLKEEGILDEK------PRLCSV 172
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK ++P + +VKSPQQ G+ +K + + L R +YH+T+MPC+DK
Sbjct: 173 CPGFVLYCEKTKPG-LVPLLLNVKSPQQITGSLLKDYSKKHLSNR---LYHLTIMPCFDK 228
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
KLEA+R D G E EVD V+T E + ++ +NF+ + S D
Sbjct: 229 KLEASRSD---------------GEE--EVDCVITPKEFVTMLDELDLNFKDYDIS--DT 269
Query: 295 MLTNV---------DDEGHLYGVAGSS-GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 344
T + D E H GSS GGYA F++ + K E L +NS
Sbjct: 270 SSTQILYEMSPKSWDPEIHWASNEGSSSGGYA---FQYIL-AMSMKYPETDLVMLQGKNS 325
Query: 345 DFREVAL----EVEGKTLLKFALCYGFQNLQNIVRKV---KMRKCDYQ------------ 385
D E L + + + + YGF+N+QN+VRK+ M++ + +
Sbjct: 326 DVMEYRLIDNIQTPPRVIASSSEIYGFRNIQNLVRKLIGGDMKRRNVKILRKRNTTKNNS 385
Query: 386 -------------FVEVMACPSGCLNGGGQIKPKPGQSPKE-LIKTLETIYLENVMLAD 430
F+EVMACP GC+NGGG I + S + LI+ L Y + + D
Sbjct: 386 NSKPTAIDPHKTDFIEVMACPGGCINGGGLINGEQNSSKRRALIQELNEKYKRELKIID 444
>gi|365842938|ref|ZP_09383904.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
gi|364574198|gb|EHM51669.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
Length = 583
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 214/410 (52%), Gaps = 34/410 (8%)
Query: 58 DCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C + ++E +E + I + K VI+ ++P R L + FG+ V
Sbjct: 191 DCVLCGQCSLVCPVGAIVETDCTNEVTAAIQDPSKHVIVQVAPSVRVGLGDEFGMEAGAV 250
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ T L+ LG +FDT+ S DLT++E +E + R ++ E LPM++S
Sbjct: 251 VTGKMVTALRMLGFDKVFDTNFSADLTIMEEGSELLKRIREGGE---------LPMITSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y EK ++ ++S+ KSPQ GA K + QK+G+ P ++ V+VMPC K
Sbjct: 302 SPGWVTYLEKH-HPELIDHLSTAKSPQAMFGAVAKTYYAQKMGWDPHDVVSVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA+R + + Y+D VD VLTT E+ LI+ ++ L ES D
Sbjct: 361 KYEASRPEL------GRDGYQD-------VDYVLTTRELAKLIRYVGLDLSVLPESEFDS 407
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN--SDFREVALE 352
L G ++G ++GG E R A + GK + LEF +R + +E ++
Sbjct: 408 PLGTGSGAGAIFG---ATGGVMEAALRTAYELYTGKTLP-RLEFDAVRGDINAIKEATID 463
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++G T LK A+ G +N + ++R+V+ + DY F+E+MACP GC+ GGGQ
Sbjct: 464 LDG-TPLKVAVANGLKNAEELIRRVERGEADYIFIEIMACPGGCIGGGGQPIGTNNAVRD 522
Query: 413 ELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
I+ L I ++ L +NP ++++Y+E+ P S+++ + +HT YH
Sbjct: 523 ARIQALYEID-RSLPLRKSHENPEIKTIYEEFFGAPLSQRSHELLHTHYH 571
>gi|359414660|ref|ZP_09207125.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
gi|357173544|gb|EHJ01719.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
Length = 461
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 217/463 (46%), Gaps = 76/463 (16%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK-----------------QSLDE-F 82
V+ + +P +I C++C CI + E +S++E
Sbjct: 25 VNAIQGEAGQPQEIDYDVCVSCGQCIQVCNSYAFENRENSHAIEEKRRARGLLESVNEPV 84
Query: 83 LSNINKGKAV-------------IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGV 128
+ NKG A I+ +P R SL E FG+ + K+ L+ LG
Sbjct: 85 FAAFNKGNAAKVKEALHNEELFTIVQCAPAIRVSLGEEFGLKAGSLTAGKMAAALRRLGF 144
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
++DT+ DLT++E +E I R + LPM +S CP W+ + E+ S
Sbjct: 145 NRVYDTNFGADLTIMEEGSELIKRVTKG---------GKLPMFTSCCPAWVKFMEQ---S 192
Query: 189 Y--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 246
Y +L ++SS KSPQQ G K + + P +IY+V +MPC K+ E RE+
Sbjct: 193 YPELLNHLSSCKSPQQMAGTIFKTYGAKIDKVSPKKIYNVAIMPCTCKQFECDREEM--- 249
Query: 247 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 306
Q+ ++D VD V+TT E LI+ K ++F+ L++ D L + G+++
Sbjct: 250 ---QDSGFKD-------VDIVITTREFAQLIRDKGIDFKNLKDEEFDLPLGSYTGAGNIF 299
Query: 307 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 366
GV +GG E R + L K I +LE +R S+ VA K LK A+ G
Sbjct: 300 GV---TGGVMEAALRSGYEMLTKKSIP-NLELNFVRGSEGIRVAEVKLPKITLKVAVVSG 355
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ------IKPKPGQSPKELIKTLET 420
+N+ I+ +K C++ F+EVM CP GC++GGGQ I + G L+ +
Sbjct: 356 LKNVVKILEDIKEGNCEFDFIEVMTCPEGCVSGGGQPKFILDIDRRNG-----LVSRKKG 410
Query: 421 IYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IY + + + +NP ++ LY+E+L +P EK+ +HT++
Sbjct: 411 IYKHDSELEIRKSHENPFIKKLYEEFLIEPLGEKSHHLLHTKF 453
>gi|365758752|gb|EHN00579.1| Nar1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 493
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 150/515 (29%), Positives = 241/515 (46%), Gaps = 91/515 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFK------NPDKPQVSTSSKQQAEPVKISLKD 58
S L DL+DFI+P+ CV + + K N D ++ Q E V I+L D
Sbjct: 1 MSALLSEADLNDFISPALACVKPTQVSGGKQKNNNVNADGEYEVSTEPDQLEKVSITLSD 60
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPL 113
CLACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA ++G++
Sbjct: 61 CLACSGCITSSEEILLSSQSHSVFLENWGKLSQQQDKFLVVSVSPQCRLSLAHYYGLTLE 120
Query: 114 QVFKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
L F + K + T R +++ + + +A +Q Q++ +R P+LS
Sbjct: 121 AADLCLMNFFQRQFHCKYMVGTEMGRIVSISKTVEKIVANKRQKQDAGVDRK----PLLS 176
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
+ CPG++ Y EK + P + +VKSPQQ G+ IK+ + LG + YH+++MPC+
Sbjct: 177 AVCPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIKNTF-ESLGVASESFYHLSLMPCF 234
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EES 290
DKKLEA+R + + D+G +D V+T EV+ ++Q ++F + E++
Sbjct: 235 DKKLEASRPESL-----------DDG-----IDCVITPREVVTMLQELNLDFSSFITEDT 278
Query: 291 PLDKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNS 344
L L+ D H + G+ GGYA K G V+EG RNS
Sbjct: 279 TLYGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAMQKLHPGSQMLVLEG-------RNS 331
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRKCDY------- 384
D E L+ + + GF+N+QN+VRK+ +RK
Sbjct: 332 DIVEYRLQQSDDIIAAASELSGFRNIQNLVRKLTSATGPERKRNITALRKRRMGPNANSR 391
Query: 385 ---------------QFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVML 428
++EV ACP C+NGGG + + K+L++ L + + + +
Sbjct: 392 KMTAATAVTADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQALNKRHGQELEM 451
Query: 429 ADP------FKNPLVRSLYDEWLEQPGSEKAKKHV 457
DP + +R L E++ P + A+K +
Sbjct: 452 VDPLALGPELEEAAMRPLSLEYIFAPVKQAAEKDL 486
>gi|316931523|ref|YP_004106505.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1]
gi|315599237|gb|ADU41772.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1]
Length = 619
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 204/413 (49%), Gaps = 41/413 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQV 115
C++C C+ T L E+ + LS I V ++ +P R + E FG+ + V
Sbjct: 213 CVSCGQCVLVCPTGALGERDETERALSYICDPNVVTVVQFAPAVRVAFGEEFGMPAGTNV 272
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ + LGV + DT+ + D+ ++E E +AR KQ + P +S C
Sbjct: 273 EGQIIAACRKLGVDVVLDTNFAADVVIMEEGAELLARLKQGRR----------PTFTSCC 322
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI +AE +LP +SS KSPQQ + K ++ ++LG + I +++MPC KK
Sbjct: 323 PAWINFAEIHYPD-VLPLLSSTKSPQQVLSTIAKSYLPEQLGVSAERIRVISIMPCIAKK 381
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK- 294
EA R V D + PE D VLTT E L++ + ++ + L S D+
Sbjct: 382 DEAVRPQMVH--DGR-----------PETDLVLTTREFARLLRREGIDLKDLPSSQFDRP 428
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L+ G ++G ++GG E R + G+ ++ +E +R + RE +++
Sbjct: 429 FLSAYSGAGAIFG---TTGGVMEAAVRTIYALVNGRELD-RIELMQLRGFEGLREAVVDL 484
Query: 354 EGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G +K A+ +G + + +V V + +Y F+EVMACP GC++GGG ++ K P
Sbjct: 485 GGPVGEVKVAMVHGLGDTRRLVESVLSGQANYDFIEVMACPGGCVDGGGSLRSKKAYLPL 544
Query: 413 ELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K ETIY NV A + NP V++LY E L+ P SE A + +HT Y
Sbjct: 545 AL-KRRETIY--NVDRAAKVRQSHNNPQVQALYRELLQAPNSEIAHRLLHTHY 594
>gi|297617703|ref|YP_003702862.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
gi|297145540|gb|ADI02297.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Length = 401
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 181/361 (50%), Gaps = 33/361 (9%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKA-----VIISLSPQSRASLAEHF 108
I + CL C C+ S +E S+ +S + K V++ +P R +L E F
Sbjct: 55 IDTRKCLNCGQCLISCPFGAIEDASM---VSQVKKALTDPDIFVVVQEAPSVRVALGEEF 111
Query: 109 GISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G++P V K+ L+ LG ++DT + DLT++E E I R +
Sbjct: 112 GMAPGTNVKGKMYAALRKLGFDRVYDTEFAADLTIMEEGTELIHRIFKHLGIPGYEHVGP 171
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S CP W+ YAE +LP+ISS KSPQQ GA K + QKL P ++ V+
Sbjct: 172 LPQFTSCCPAWVKYAEDNY-PEVLPHISSAKSPQQMFGAVAKTYAAQKLNVDPANMFVVS 230
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
VMPC KK E R + + Y+D VD+V+TT E+ +I+ ++F +L
Sbjct: 231 VMPCTAKKYECNRPEMI------ASGYKD-------VDAVITTRELAQMIKEAGIDFASL 277
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDF 346
+ DK + ++ G++GG E R A + L G+ +E ++FK +R
Sbjct: 278 PDEKADKFVGLSTGAATIF---GATGGVMEAALRTAYEVLSGQSLE-QIDFKNVRGLRPI 333
Query: 347 REVALEVE----GKTL-LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
RE ++E+ GKTL +K + G +++ +++ V + Y F+EVM CP GC+NGGG
Sbjct: 334 REASVEIPIKDLGKTLPVKVCVVSGTKHVDGVIKDVLKGRSPYHFIEVMNCPGGCVNGGG 393
Query: 402 Q 402
Q
Sbjct: 394 Q 394
>gi|383755464|ref|YP_005434367.1| putative iron hydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367516|dbj|BAL84344.1| putative iron hydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 585
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 213/413 (51%), Gaps = 33/413 (7%)
Query: 58 DCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C + ++EK + L + + K VI+ ++P R +L + FG+ P +
Sbjct: 197 DCILCGQCSLVCPTGAIVEKDDTQKVLDALQDNTKHVIVQVAPSVRVALGDAFGLEPGAI 256
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ T LK LG +FDT+ DLT++E +EF+ R ++ LPM++S
Sbjct: 257 VTGQMVTALKLLGFDKVFDTNFGADLTIMEEGHEFLHRLN---------NDGVLPMMTSC 307
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y EK S I ++SS KSP GA K + Q+ G +P EI V++MPC K
Sbjct: 308 SPGWVNYMEKHFPSCI-DHLSSAKSPMSMFGAIAKTYYAQQAGLKPQEIVTVSIMPCTAK 366
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR + + Y+D VD VLTT E++ LI+ ++ L E+ D
Sbjct: 367 KFEAARPEM------GRDGYQD-------VDIVLTTRELIKLIKYVGLSIGKLPENDFDS 413
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++ G++GG E R + + GK +E +EF +R D +E + +
Sbjct: 414 PLGLASGAGAIF---GATGGVMEAALRTVYEKVTGKTLE-KVEFMDVRGFDGIKEATIHL 469
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G+ ++ A+ + +N + I+ +VK Y F+E+MACP GC+ GGGQ K+
Sbjct: 470 PGRD-VRIAVAHTLKNARKIMEQVKKGTSPYDFIEIMACPGGCIGGGGQPIGTTNAIRKQ 528
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
I L I + + +NP +++LY ++L +P SE+A + +HT YH V K
Sbjct: 529 RIAALYEID-RTLPIRKSHENPDIQTLYQDFLGEPLSERAHELLHTHYHKVDK 580
>gi|312144188|ref|YP_003995634.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
gi|311904839|gb|ADQ15280.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
Length = 574
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 203/409 (49%), Gaps = 39/409 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C C + + EK ++ + + + K VI+ +P +A+L E F I+ V
Sbjct: 194 NCANCGQCASVCPVGAINEKSEIENVWAALEDDEKHVIVQTAPSIQATLGEEFDITNGTV 253
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ L+ LG +F T + DLT++E +EF+ + + +LP ++S
Sbjct: 254 VTGKMVAALRRLGFDKVFSTDFAADLTILEEGSEFLKKLE---------GEGTLPHITSC 304
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ YAE S +L ++S+ KSP Q A K + Q+ G + ++Y V +MPC K
Sbjct: 305 CPGWVKYAEHNY-SDLLNHLSTAKSPMQMFSALGKTYYPQQSGVKAKDVYTVAIMPCTAK 363
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+ + D+VLTT E+ +I+ +NF L++ D+
Sbjct: 364 KFEKDREEI-------------NATRFKDTDAVLTTRELARMIKEMGINFSKLDDEDFDE 410
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTIRNSDFREVALEV 353
++ G ++G ++GG AE R + L G+ +E +L F+ + +F EV +
Sbjct: 411 LMGTSTGAGTIFG---TTGGVAEAAVRTVKEKLTGEPLEQLNLGFRGV---NFAEVEI-- 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + ++ K CD F+EVMACP GC+ GGGQ P+P K+
Sbjct: 463 -GDRTVKIAIANGLGNAEKLLNACKDGNCDCDFIEVMACPHGCVGGGGQ--PRPATYEKK 519
Query: 414 LIKTLETIYLEN-VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + + +++ + KNP V LY E+L +P S ++ +HT Y
Sbjct: 520 VKRGVGLSGIDDKSAVRKSHKNPQVIKLYKEFLGKPLSGESHHLLHTTY 568
>gi|293376714|ref|ZP_06622937.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909]
gi|325845179|ref|ZP_08168487.1| ferredoxin hydrogenase [Turicibacter sp. HGF1]
gi|292644671|gb|EFF62758.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909]
gi|325488775|gb|EGC91176.1| ferredoxin hydrogenase [Turicibacter sp. HGF1]
Length = 590
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 203/419 (48%), Gaps = 49/419 (11%)
Query: 59 CLACSGCITSAETVMLEKQS-LDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ-- 114
C+ C CI + T L++ S +++ + IN K V+ ++P RA+L E F + P+
Sbjct: 191 CIHCGQCIAACPTAALQEHSNINQVVEAINDPNKMVVFQVAPAVRAALGEEFNL-PIGTC 249
Query: 115 VFKKLTTFLKSLGVKS--IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ +G S +FDT+ S DLT++E E + R +Q LPM++
Sbjct: 250 VTGKIAAALRRIGGPSSKVFDTNFSADLTIMEEAYELVNRIQQG---------GVLPMIT 300
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S PGWI AE+ + +LP++S+ KSPQQ GA +K + +K IY V+VMPC
Sbjct: 301 SCSPGWIRLAEQYMPD-VLPHLSTCKSPQQMFGAILKSYWAEKNNIDKSSIYCVSVMPCV 359
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK E RE+ I +VD+ +TT E+ +I++ ++F AL +
Sbjct: 360 AKKTELKREELAVN-------------GIADVDASITTRELARMIRMYGLDFNALPDETF 406
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
D+ L G ++ G++GG E R AA L G+ +E +E++ +R + + A
Sbjct: 407 DQPLGEYSGAGTIF---GATGGVMEAALRTAADVLSGQSLE-QIEYEAVRGVEGVKEATL 462
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G L A+ +G + V ++ Y F+EVM C GC+ GGGQ P
Sbjct: 463 TVGDLTLNVAVIHGGKQALETVNQLLTSDKPYHFIEVMGCSGGCVAGGGQ-----PHIPA 517
Query: 413 ELIKTLETIYLENV----------MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L I E ++ +NP+++++Y E+L P S A + +HT Y
Sbjct: 518 HLFNKGLDIREERAKALYEDDKAQVIRKSHENPVIQNVYAEYLGTPNSHLAHELLHTHY 576
>gi|226941246|ref|YP_002796320.1| HydC [Laribacter hongkongensis HLHK9]
gi|226716173|gb|ACO75311.1| HydC [Laribacter hongkongensis HLHK9]
Length = 599
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 203/417 (48%), Gaps = 45/417 (10%)
Query: 58 DCLACSGCITSAETVML----EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP- 112
DC++C C+ T L E +++ ++L ++ + ++P R L E FG+ P
Sbjct: 195 DCVSCGQCVMVCPTGALAERDETRTVMDYL--VDPDIVTVFQIAPAIRVGLGEAFGLPPG 252
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V ++ L+++G I DT+ + DL ++E +E + R +Q + + +
Sbjct: 253 TNVEGQVVAALRAIGADVILDTNFAADLVIMEEGHEVLGRVRQHEGT----------TFT 302
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGW+ YAEK ILP +SS +SPQ +G+ K + ++G P + V+VMPC
Sbjct: 303 SCCPGWVDYAEKHHPD-ILPMMSSTRSPQACLGSLAKSWLPTRMGIDPARVRVVSVMPCT 361
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EAAR QL +P+VD VLT E L++ + V+ ALE S
Sbjct: 362 AKKQEAARP----QLGRN---------GVPDVDVVLTIREFARLLRREGVDLAALEPSAF 408
Query: 293 DK-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE---GHLEFKTIR-NSDFR 347
D +++ G ++ G+SGG E R TL+ V + G ++ + +R N R
Sbjct: 409 DDPLMSEYSGAGAIF---GASGGVMEAAIR----TLYYAVNQRELGEIDVQAVRGNESVR 461
Query: 348 EVALEVEGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
E +EV G L+ A+ +G + + + V K Y F+EVMACP GC++GGG ++
Sbjct: 462 EATIEVGGDVGTLRVAIVHGLRAAGQMAKAVLAGKARYDFIEVMACPGGCIDGGGHLRHN 521
Query: 407 PGQSPKELIKTLETIYLENV-MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ ++ + +N VR LY+++L +P S A +HT YH
Sbjct: 522 KRYLKHAGERRAGLFAIDRARAVRQSHRNQQVRRLYEDFLGEPLSHVAHDLLHTHYH 578
>gi|414153110|ref|ZP_11409437.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411455492|emb|CCO07339.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 523
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 221/434 (50%), Gaps = 33/434 (7%)
Query: 51 PVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ +D+ + + +K V++ +P +R +L E F
Sbjct: 103 PIKNDIT-CVNCGQCTLWCPTAAITERDEIDKVVKALEDKNIHVVVQTAPATRVALGEEF 161
Query: 109 GISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G+ P + + K LK LG ++FDT+ + DLT++E E + R + D +
Sbjct: 162 GMPPGSIVEGKQVAALKKLGFDAVFDTNFTADLTIMEEGTELVRRV-----AGDLKGVKP 216
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +L ++SS KSPQQ +GA +K + ++ G P +I+ V+
Sbjct: 217 LPQFTSCSPGWVKFCE-YFYPDLLEHMSSCKSPQQMLGALVKTYYAKEKGIDPAKIFSVS 275
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK E R +++ + +E L +VD VLTT E+ LI++K ++ L
Sbjct: 276 IMPCTAKKYECNRP----EMNDAGKHVGNEKLR--DVDVVLTTRELARLIKMKGIDINNL 329
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
E++ D ++ ++ G++GG E R A + + E L +R
Sbjct: 330 EDAQYDPLMGEGTGAAVIF---GATGGVMEAAVRSAYFLITKENPPEALLNLTPVRGLQG 386
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-----YQFVEVMACPSGCLNGG 400
+E +LE+ G + A+C+G N + ++ +++ K Y F+E M+CP GC++GG
Sbjct: 387 VKEASLEIPGVGQVNVAICHGLSNARKVLDQLREDKKQGKPPRYHFIEFMSCPGGCISGG 446
Query: 401 GQIKPKPGQSPKELIK--TLETIYLENVMLAD---PFKNPLVRSLYDEWLEQPGSEKAKK 455
GQ P+ P + ++ L +IY + + +N V LY ++LE+P S A++
Sbjct: 447 GQ--PRTSLPPSDQVRQARLNSIYQIDAKIYKKRLSHENQEVAMLYQKFLEKPNSHLAEE 504
Query: 456 HVHTEYHPVVKSIT 469
+HTEY K+ T
Sbjct: 505 LLHTEYVDRSKTFT 518
>gi|190409209|gb|EDV12474.1| protein LET1 [Saccharomyces cerevisiae RM11-1a]
gi|323331866|gb|EGA73278.1| Nar1p [Saccharomyces cerevisiae AWRI796]
gi|323335871|gb|EGA77149.1| Nar1p [Saccharomyces cerevisiae Vin13]
gi|323346803|gb|EGA81082.1| Nar1p [Saccharomyces cerevisiae Lalvin QA23]
gi|392297112|gb|EIW08213.1| Nar1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 491
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 229/482 (47%), Gaps = 83/482 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK + P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R + + D+G +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRPESL-----------DDG-----IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMIVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 ----------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLAD 430
++EV ACP C+NGGG + + K+L++TL + E + + D
Sbjct: 392 AAATAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVD 451
Query: 431 PF 432
P
Sbjct: 452 PL 453
>gi|188588322|ref|YP_001919488.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43]
gi|188498603|gb|ACD51739.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43]
Length = 576
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 197/411 (47%), Gaps = 34/411 (8%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C CI + L ++S E + N + K VI++++P RA++ E F + +
Sbjct: 190 NCLLCGQCIAACPVDALSEKSHTERVQNALEDPNKHVIVAMAPSVRAAMGEAFKMGYGVD 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E I+R + PM +S
Sbjct: 250 VTGKIYTALRMLGFNKIFDINFGADMTIMEEATELISRVNEG---------GPFPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ E +I +SS KSPQQ GA K + + G +++ VT+MPC K
Sbjct: 301 CPSWVREVENYFPEFI-DNLSSAKSPQQIFGAASKTYYPEIEGLDAKDVFTVTIMPCTSK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ + GL +D+V+TT E+ +I+ +NF LE+S D
Sbjct: 360 KFEADREEM-----------ENNGLR--NIDAVITTRELAKMIKTAKINFSTLEDSEADP 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++G ++GG E R A + K +E +E++ +R + + A
Sbjct: 407 SMGEYTGAGAIFG---ATGGVMEAALRSAKDFIENKSLE-EIEYEQVRGLEGIKEATVTL 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G A+ G N+ + V+ +M + Y F+EVM+CP GC+NGGGQ K
Sbjct: 463 GGQEYNIAVINGAANVFDFVKSGRMEEKQYHFIEVMSCPGGCVNGGGQPHVNSKDRSKID 522
Query: 415 IKTLETIYLEN----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+T+ L N + +N + +Y+ ++ +PG A + +H +Y
Sbjct: 523 IRTVRASVLYNQDKGLSKRKSHENASLLKMYETYMGKPGKGLAHELLHIKY 573
>gi|325972134|ref|YP_004248325.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
gi|324027372|gb|ADY14131.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
Length = 582
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 216/430 (50%), Gaps = 39/430 (9%)
Query: 49 AEPVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
A +K+ C+ C C + EK + FL+ + K V++ ++P R L+E
Sbjct: 181 AAMLKLEDSPCVRCGQCAAHCPVGAIYEKDEIATFLAAAADPQKQVVVQIAPSIRVGLSE 240
Query: 107 HFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
FG+ V KK+ L+ LG K++ DT+ DLT++E E + R +
Sbjct: 241 SFGLPAGTVTTKKIYAALRRLGAKAVHDTNFGADLTIMEEGTELVTRLTK---------G 291
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225
+LP ++S CP W+ Y +K +L ++SS KSP Q +GA K +K+G P ++Y
Sbjct: 292 GALPQMTSCCPAWVDYVQKYYPD-LLDHVSSAKSPMQMVGAIEKTFYAEKMGMDPAKMYT 350
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
V +MPC KK E+ R++ ++ +RD VD VLTT E LI+ + ++F
Sbjct: 351 VAIMPCTAKKYESDRDEHMYA-----SGFRD-------VDLVLTTREFARLIKSQGIDFL 398
Query: 286 ALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-S 344
+L E D L G ++ G++GG E R A + G ++ ++E +R S
Sbjct: 399 SLAEEEADSPLGEYSGAGTIF---GATGGVMEAAVRTAYHIVTGNELQ-NVEVDVVRGLS 454
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-----YQFVEVMACPSGCLNG 399
+ ++ ++ +G T ++ A+ +G +++ ++ +++ K + Y+F+EVMAC GC+ G
Sbjct: 455 EIKKGTVDFDG-TPVRVAVVHGLSHVKEVMDEIRAAKAEGKQAPYEFIEVMACRGGCIAG 513
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
GGQ KE L T +N + +N ++ LY+ +LE+P S KA +HT
Sbjct: 514 GGQPYGATDSLRKERSAGLYTDD-KNSAVRRSHENESIQKLYETYLEKPMSHKAHHLLHT 572
Query: 460 EYH--PVVKS 467
Y PV K+
Sbjct: 573 TYQEIPVYKA 582
>gi|192288570|ref|YP_001989175.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1]
gi|192282319|gb|ACE98699.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1]
Length = 619
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 202/413 (48%), Gaps = 41/413 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQV 115
C++C C+ T L E+ D L I + V ++ +P R + E FG+ + V
Sbjct: 213 CVSCGQCVLVCPTGALGERDETDRALDYICDPEVVTVVQFAPAVRVAFGEEFGLPAGTNV 272
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ + LGV + DT+ + D+ ++E E +AR KQ + P +S C
Sbjct: 273 EGQIIAACRKLGVDVVLDTNFAADVVIMEEGAELLARLKQGRR----------PTFTSCC 322
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI +AE +LP +SS KSPQQ + K ++ +LG + I +++MPC KK
Sbjct: 323 PAWINFAEIHYPD-VLPLLSSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIMPCIAKK 381
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK- 294
EA R V D Q PE D VLTT E L++ + ++ + L S D+
Sbjct: 382 DEAVRPQMVH--DGQ-----------PETDLVLTTREFARLLRREGIDLKDLPSSQFDRP 428
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L+ G ++G ++GG E R + G+ ++ +E +R + RE +++
Sbjct: 429 FLSAYSGAGAIFG---TTGGVMEAAVRTIYALVNGRELD-RIELTQLRGFEGLREATVDL 484
Query: 354 EGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G +K A+ +G + + +V V + +Y F+EVMACP GC++GGG ++ K P
Sbjct: 485 GGPVGEVKVAMVHGLGDTRRLVESVLSGEANYDFIEVMACPGGCVDGGGSLRSKKAYLPL 544
Query: 413 ELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K ETIY NV A + NP V+ LY E L+ P SE A + +HT Y
Sbjct: 545 AL-KRRETIY--NVDRAAKVRQSHNNPQVQVLYRELLQAPNSEIAHRLLHTHY 594
>gi|71415673|ref|XP_809896.1| hydrogenase [Trypanosoma cruzi strain CL Brener]
gi|70874345|gb|EAN88045.1| hydrogenase, putative [Trypanosoma cruzi]
Length = 474
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 218/441 (49%), Gaps = 66/441 (14%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA-----EPVKISL 56
+ FS +L + + D+IAPS+ C + P + Q Q E VKI+L
Sbjct: 3 TSNFSASLMLAGM-DYIAPSEACTL---------PTRLQRGADGSVQRHASGNEVVKITL 52
Query: 57 KDCLACSGCITSAETVMLEKQSLDEFL----SNINKGKAVIISLSPQSRASLAEHFGISP 112
+DCLACSGC+T+AET+++ QS E + S ++ + ++++S QS AS+A H +
Sbjct: 53 QDCLACSGCVTTAETILVTSQSRAEIIKVRASELD--RPFLVTISDQSAASIAAHLKVDS 110
Query: 113 LQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
+ F ++ F ++ L + + D ++ +++ + E+ R + +++ LPM+
Sbjct: 111 RRAFHIISGFFRTVLKSQYVSDLRWAQHISVEKTAQEYCHRLQHARD--------KLPMI 162
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
SACPGW+CY EKQ GS ILP + V SPQ G K Q + H++V PC
Sbjct: 163 VSACPGWVCYCEKQ-GSAILPLLCPVMSPQGIAGCYAKRVFPQ--------LCHISVQPC 213
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
+D+KLEAAR+ +D E D VL+T E+++ + + E+P
Sbjct: 214 FDRKLEAARDT---SIDGNERY----------TDFVLSTQELMEWMMETDASIP--WEAP 258
Query: 292 LDKMLTNV------DDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNS 344
L+ + + L SGGY ++ A+ + + ++ RN+
Sbjct: 259 LNSSFEFLPPPLLKESSSVLAANMEGSGGYHRFAMQYVAENVHNLSFSRDDILYEMKRNA 318
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---DYQFVEVMACPSGCLNGGG 401
+ VA + + + YGFQ++QNIVR +K + Y F+E+MACP GCLNGGG
Sbjct: 319 N-HHVATSPSNPGEV-YCVAYGFQHIQNIVRGLKRKLASVSSYTFIELMACPDGCLNGGG 376
Query: 402 QIKPKPGQSPKELIKTLETIY 422
Q++ S E I ++ I+
Sbjct: 377 QVRSGNLTSNLETIAAVKAIF 397
>gi|158320026|ref|YP_001512533.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
gi|158140225|gb|ABW18537.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
Length = 567
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 206/407 (50%), Gaps = 52/407 (12%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGIS 111
I+ +C+ C C T ++ K D +N + K VI ++P R +L E FG+
Sbjct: 184 IAEVNCVNCGQCRNVCPTGAIIIKNENDRVWEVVNDRSKRVIAQVAPAVRVALGEEFGLE 243
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P +V K+ LK++G+ ++DT+ + D+T+IE EF+ R ++ LP+
Sbjct: 244 PGEVTIGKIVAALKAIGIDEVYDTAFAADMTVIEESKEFMERLSLGED---------LPL 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK-HHICQKLGFRPDEIYHVTVM 229
+S CPGW+ +AE + ++ ++SS KSPQQ GA +K ++ +K E ++VM
Sbjct: 295 FTSCCPGWVKFAENKFPD-MMDHVSSCKSPQQMFGAVLKEYYKNEKNNAEGKETVVISVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EAARE+F ++E RD VD V+TT E+ LI+ + F LEE
Sbjct: 354 PCTAKKAEAAREEF------EQEGIRD-------VDFVITTQELALLIKEAGIIFHQLEE 400
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR--------HAAKTLFGKVIEGHLEFKTI 341
D G ++G ++GG E V H+ K + FK +
Sbjct: 401 ESFDMPFGLASGSGIIFG---ATGGVTEAVVTRLLKDKPDHSTKDIL---------FKEV 448
Query: 342 RN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
R + +E V+GK + K A+ +G +N +++++K + Y F+EVMACP GC+ GG
Sbjct: 449 RGLENLKEAVFNVDGKEV-KVAIVHGLKNTDELIKQIKAGERYYDFIEVMACPGGCVAGG 507
Query: 401 GQIKPKPGQSPKELIKTLETI-YLENVMLADPFKNPLVRSLYDEWLE 446
GQ P + +E K L + ++ +D KNP+V SL++ L+
Sbjct: 508 GQPIPVNAEMRRERAKGLYKLDRTSHIKSSD--KNPIVASLFEGILK 552
>gi|345859646|ref|ZP_08811983.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344327242|gb|EGW38683.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 525
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDE-FLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQV 115
C+ C C + + E+ D+ F + + V++ +P +R L E FG+ V
Sbjct: 115 CVNCGQCTQWCPSGAITERDDTDKVFKALADPNITVVVQTAPSTRIGLGEEFGMPVGTNV 174
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG +FDT+ + DLT++E E + R + P L+S C
Sbjct: 175 QGKQVAALRKLGFDVVFDTNFTADLTIMEEGTELVKRVTGELKK-------PTPQLTSCC 227
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E ++P +SS KSPQQ G +K + +K P +I+ V +MPC KK
Sbjct: 228 PGWVKFVE-YFYPDLIPNLSSAKSPQQMEGTLMKTYYAEKKNVDPKKIFSVAIMPCTAKK 286
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + V S + +D + P+VD VLTT E+ +I+ +NF AL + D++
Sbjct: 287 FECQRPEMV----SASKELKDSKV-TPDVDVVLTTRELARMIKRAGINFAALPDDQYDQL 341
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEV 353
+ + G ++ G++GG E R A + G+ L + +R +E A+ +
Sbjct: 342 MGSGTGAGAIF---GTTGGVMEAAARSAYYLITGQQPPSALWDLTPVRGMQGVKEAAVNI 398
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G +K A+ G N + ++ +++ + F+EVMACP GC GGGQ P+ P +
Sbjct: 399 PGVGSVKVAVISGLTNARLVMDQIRSGNAPWVFIEVMACPGGCEYGGGQ--PRASSPPSD 456
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ L N L + NP ++ +Y ++L P S+KA++ +HT Y
Sbjct: 457 DVRNRRAASLYKIDANAKLRNSHDNPQIKQVYADFLTAPMSKKAEELLHTNY 508
>gi|336371429|gb|EGN99768.1| hypothetical protein SERLA73DRAFT_179963 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384195|gb|EGO25343.1| hypothetical protein SERLADRAFT_465344 [Serpula lacrymans var.
lacrymans S7.9]
Length = 399
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 152/272 (55%), Gaps = 49/272 (18%)
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
ML+SACPGWICYAEK S +LP+I+ KSPQQ +G +K I + G RPDEIYHV+VM
Sbjct: 1 MLASACPGWICYAEKAH-SEMLPFIARTKSPQQIMGTLVKSWIGNQWGKRPDEIYHVSVM 59
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA--- 286
PCYDKKLEA+R+DF ++ S +VD V+TTGE+ +++ K +
Sbjct: 60 PCYDKKLEASRQDFYNEMYSTR-----------DVDCVITTGELELMMREKGWDLSVPVD 108
Query: 287 LEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG--HLEFKTIRNS 344
E++P + +E L + S G + + H+ + +V +G L FKT+R S
Sbjct: 109 SEDAPPFTPSSPSHEEQFLPELL-SHPGTSSGSYLHSLISAMSRVSDGPTSLSFKTVRTS 167
Query: 345 DFREVALEVE--GKTLLKFALCYGFQNLQNIVRKV----------------------KMR 380
D+ E L + G+ + K A CYGF+NLQN+VRKV +++
Sbjct: 168 DYEEYTLRNQETGEVVFKGAKCYGFRNLQNVVRKVGREAGVQVGKGAAGRMAGGIRARLK 227
Query: 381 KC-------DYQFVEVMACPSGCLNGGGQIKP 405
K Y +VEVMACP GC+NGGGQ+KP
Sbjct: 228 KNADGEADRGYDYVEVMACPGGCVNGGGQLKP 259
>gi|325971420|ref|YP_004247611.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
gi|324026658|gb|ADY13417.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
Length = 594
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 207/414 (50%), Gaps = 34/414 (8%)
Query: 58 DCLACS-GCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
+C CS C T+A T ++Q + + LS+ + V++ +P R L E G+ V
Sbjct: 196 NCGQCSLVCPTAAITEKSQQQQVFDALSDPDL--VVLVQTAPAIRVGLGEAMGLKEGSLV 253
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ + L+SLG +FDT + DLT++E E I R E LPM++S
Sbjct: 254 TGRMVSALRSLGFDKVFDTQFTADLTIMEEAYELIHRLTHQGE---------LPMITSCS 304
Query: 176 PGWICYAE----KQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
PGWI + E +Q+G ++SS KSPQQ GA K ++ P +I V++MPC
Sbjct: 305 PGWIKFIETFYPEQVG-----HLSSCKSPQQMFGAIAKTFYAEQANLDPRKIRVVSIMPC 359
Query: 232 YDKKLEAAREDFVFQLDS-QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
KK EA R + D +E+ E +VD LTT E+ +++ ++F AL+E
Sbjct: 360 TAKKFEAGRSEMDSSFDYWKEKMNLGEDERFCDVDWALTTRELAKMLKQVGIDFSALKEE 419
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREV 349
D L ++ SSGG E R A + L G V+ +EF +R + RE
Sbjct: 420 AFDDPLGASTGGAVIF---ASSGGVMEAALRTAVEKLTGSVL-AEVEFAQLRERTGIREA 475
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
AL+V G + +K A+ N + ++ +++ Y F+EVM CP GCL GGGQ P P
Sbjct: 476 ALQV-GDSTIKVAVANTLSNARVLLDQIQGGTSPYAFIEVMTCPDGCLGGGGQ--PIPTN 532
Query: 410 SPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L K ++IY E+ + +NP ++ LY +L+QP SE + +HT Y
Sbjct: 533 ADIRL-KRAQSIYEEDRHKPIRKSHENPAIQDLYARFLDQPLSEMSHHLLHTTY 585
>gi|39933211|ref|NP_945487.1| hydrogenase gamma-fused hydrogenase large and small subunit
[Rhodopseudomonas palustris CGA009]
gi|39652836|emb|CAE25578.1| hydrogenase gamma-fused hydrogenase large and small subunit
[Rhodopseudomonas palustris CGA009]
Length = 619
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 201/413 (48%), Gaps = 41/413 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQV 115
C++C C+ T L E+ D L I V ++ +P R + E FG+ + V
Sbjct: 213 CVSCGQCVLVCPTGALGERDETDRALDYICDPNVVTVVQFAPAVRVAFGEEFGLPAGTNV 272
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ + LGV + DT+ + D+ ++E E +AR KQ + P +S C
Sbjct: 273 EGQIIAACRKLGVDVVLDTNFAADVVIMEEGAELLARLKQGRR----------PTFTSCC 322
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI +AE +LP +SS KSPQQ + K ++ +LG + I +++MPC KK
Sbjct: 323 PAWINFAEIHYPD-VLPLLSSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIMPCIAKK 381
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK- 294
EA R V D Q PE D VLTT E L++ + ++ + L S D+
Sbjct: 382 DEAVRPQMVH--DGQ-----------PETDLVLTTREFARLLRREGIDLKDLPSSQFDRP 428
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L+ G ++G ++GG E R + G+ +E +E +R + RE +++
Sbjct: 429 FLSAYSGAGAIFG---TTGGVMEAAVRTIYALVNGRELE-RIELTQLRGFEGLREATVDL 484
Query: 354 EGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+K A+ +G + + +V V + +Y F+EVMACP GC++GGG ++ K P
Sbjct: 485 GAPVGEVKVAMVHGLGDTRKLVESVLSGEANYDFIEVMACPGGCVDGGGSLRSKKAYLPL 544
Query: 413 ELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K ETIY NV A + NP V++LY E L+ P SE A + +HT Y
Sbjct: 545 AL-KRRETIY--NVDRAAKVRQSHNNPQVQALYRELLQAPNSEIAHRLLHTHY 594
>gi|406698812|gb|EKD02039.1| hypothetical protein A1Q2_03739 [Trichosporon asahii var. asahii
CBS 8904]
Length = 595
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 169/300 (56%), Gaps = 42/300 (14%)
Query: 93 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS--LGVKSIFDTSCSRDLTLIEACNE 148
++S++PQ+ ASL+ +G I L + +++ +FL S G ++ DT+ +R L L ++ +E
Sbjct: 90 VLSIAPQTLASLSAAYGGSIPLLTLLRRIRSFLSSEERGGWTVLDTTFARHLALRQSVSE 149
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
F +R + SQ +LPML+SACPGW+CYAEK G +LP +SS +SPQ GA +
Sbjct: 150 FRSRQQSSQ---------NLPMLASACPGWVCYAEKAQGD-LLPLLSSTRSPQAMQGAIV 199
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K H+ +K G + +E+YHVT MPCYDKKLEA+R DF D+ + E D VL
Sbjct: 200 KRHLAEKWGKKANEVYHVTAMPCYDKKLEASRSDFY-----------DDVAKTKETDCVL 248
Query: 269 TTGEVLDLIQLKAVNFEAL-----EESPLDKMLTNVD--DEGH---LYGVAGSSGGYAET 318
TTGE LDL+ L + F+ E+ P+ + D G L SSG Y
Sbjct: 249 TTGE-LDLL-LSELGFDPSAPVPGEDDPVPPASGDYSRPDAGFPELLTHPGSSSGSYLMA 306
Query: 319 VFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 377
+ A+ + + L + +RNS D E LE G+ L K A CYGF+NLQN+VRKV
Sbjct: 307 LLVSLAQ----EHPDAALHVRRLRNSPDNEEYFLESGGQVLFKGARCYGFRNLQNLVRKV 362
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 386 FVEVMACPSGCLNGGGQIKPKPGQSPKE 413
FVEVMACP GC+NGGGQ+KP G++ ++
Sbjct: 429 FVEVMACPGGCVNGGGQMKPTTGKAERD 456
>gi|406603961|emb|CCH44543.1| hypothetical protein BN7_4109 [Wickerhamomyces ciferrii]
Length = 528
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 225/478 (47%), Gaps = 101/478 (21%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKK----ATFKNPDKPQVSTSSKQQAEPVKI------ 54
S L DL+DFI+P C+ + N D ++ S +A V I
Sbjct: 1 MSAILSDADLNDFISPGLACIKPAGEIRSNNNTTNNDSYEIQIGSNGEALEVSIDDGTIK 60
Query: 55 -------SLKDCLACSGCITSAETVMLEKQSLDEFLSNINK---GKAVIISLSPQSRASL 104
SL+DCLACSGCITSAE V+L KQ+ L IN+ K +S+S QSR SL
Sbjct: 61 DLPSASISLQDCLACSGCITSAEEVLLAKQTHTLLLDEINQFKNDKIFCLSISHQSRISL 120
Query: 105 AEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
+ + I +++ + L F + G K I T R L++ + NE I + Q+
Sbjct: 121 STYLNIPIVKIDELLINLFSEKYGFKFIVGTEFGRILSITKTNNELINKKLQN------- 173
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
N + LSS CPG++ Y EK +LPY+ ++KSPQQ G +K I +++ +PD+I
Sbjct: 174 -NLNQVQLSSICPGFVLYVEKT-KPELLPYLFNIKSPQQITGFILKTLISKQMSIQPDKI 231
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
YH+++MPC+DKKLEAAR + + Y+++ +VD V+T E+++L +L+ +N
Sbjct: 232 YHLSIMPCFDKKLEAARP------EESDPLYQNQ----IDVDCVITPKELIELFKLENIN 281
Query: 284 F-EALEESPLDKMLTNVDD----------EGHLYGVAGSSGGYAETVFRHAAKTLFGKVI 332
E + ++P + L+ + E + SGGY+E + I
Sbjct: 282 LSEYITKTP-EPPLSLYEKAAPKFWPSPVESWSSNLGSVSGGYSENYILSLQNYYQTQGI 340
Query: 333 EGHLEFKTI--RNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKVK---------- 378
E KTI +NSD E L G L A+ GF+N+QN+VRK+K
Sbjct: 341 P--TEIKTIQGKNSDVLEFQLINSSTGSKLGSSAIINGFRNIQNLVRKLKPSNKVKIGGK 398
Query: 379 ------MRK-------------------------CDYQFVEVMACPSGCLNGGGQIKP 405
RK CDY VEVMACP GC+NGGG P
Sbjct: 399 GNSLTARRKARLQQKSNPEVAVTKGEDISADPSTCDY--VEVMACPGGCINGGGLNTP 454
>gi|406980693|gb|EKE02262.1| hypothetical protein ACD_20C00406G0007 [uncultured bacterium]
Length = 597
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 213/422 (50%), Gaps = 41/422 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C CI T + EK + + + ++ K V++ +P RA+LAE F I P + V
Sbjct: 196 CVMCGQCINRCPTGALTEKDATKDVWAALDDPTKHVVVQTAPAIRAALAEAFNIPPGERV 255
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K T LK +G +FDT + DLT++E E + R K++ + ++ +P+L+S
Sbjct: 256 TGKTVTALKKMGFDGVFDTDFTADLTILEEGTELLTRLKKALVNGEK---VPVPLLTSCS 312
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI Y E +LP +S+ KSPQQ GA K + QK+G P+ I V+VMPC KK
Sbjct: 313 PGWINYIEHYYPD-LLPNLSTCKSPQQMFGALAKTYYAQKMGINPESIVTVSVMPCTAKK 371
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + Y+D VD VLT E+ +I+ +N L+E D
Sbjct: 372 FEADRPEMC------DSGYKD-------VDYVLTNRELARMIKQSGLNLMELKEGEYDSP 418
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSD-FREVALEV 353
+ ++GV +GG E R A + + G+ + +LE +R + +E +L +
Sbjct: 419 MGISTGAAVIFGV---TGGVMEAAIRTAYELVTGREVPFNNLEIHPVRGMEGVKEASLVI 475
Query: 354 EGK---------TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
E ++ A+ G N + ++ KV+ + Y F+E+MACP GCL GGGQ
Sbjct: 476 ENALPEWSFLEGVEVQVAVANGLANAKKVMDKVRSGEVAYHFIEIMACPGGCLGGGGQ-- 533
Query: 405 PKPGQSPKELI-KTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + KE+ K + IY E N+ L NP V+ LY+E+L P EK+ K +HT Y
Sbjct: 534 --PIPTSKEIREKRAKAIYDEDRNLCLRKSHDNPAVKKLYEEFLGAPLGEKSHKLLHTHY 591
Query: 462 HP 463
P
Sbjct: 592 TP 593
>gi|339441749|ref|YP_004707754.1| hypothetical protein CXIVA_06850 [Clostridium sp. SY8519]
gi|338901150|dbj|BAK46652.1| hypothetical protein CXIVA_06850 [Clostridium sp. SY8519]
Length = 579
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 208/412 (50%), Gaps = 37/412 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGISPLQV 115
DC C CIT L E+ + ++ ++ + ++ ++P RA+ E G+SP +
Sbjct: 187 DCALCGQCITHCPVGALKERDDIGRLVNAVDDPEITTVVQIAPSIRAAWGEMLGLSPEEA 246
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++L+ LK LG +FDT S DLT++E +EF+ R K + PM +S
Sbjct: 247 SMERLSATLKFLGFDYVFDTDFSADLTIMEEGSEFLERLKGGRRD--------FPMFTSC 298
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + + Y ++S+ KSPQQ GA IK ++ Q G P +I+ +++MPC K
Sbjct: 299 CPGWVRFLKSHYPEYT-DHLSTAKSPQQMFGAVIKSYVAQLKGLDPKKIFSISIMPCLAK 357
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E+ D D+ + P+VD VLT E++ LI+ + V E LEE PLD
Sbjct: 358 KQES---DIPVMNDACGD---------PDVDVVLTNRELVRLIRSQHVKPELLEEVPLDD 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G+++G ++GG E R A G+ + F +R D ++E E+
Sbjct: 406 PMGFGSGAGNIFG---ATGGVMEAALRSAYYLATGENPDPD-AFCAVRGMDGWKEAEFEI 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK A+ G N +++ +K + Y FVEVMACP GC+ GGGQ P KE
Sbjct: 462 SG-IPLKIAVVNGLGNADRLLKAMKKGRVSYDFVEVMACPGGCVGGGGQ----PFYDGKE 516
Query: 414 LIKTLETI---YLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ + I + L +NP +R +Y ++L P SE++ K +HT++H
Sbjct: 517 MAASRAPILYAFDRKTDLRFSHENPSIRKIYADYLGAPLSERSHKLLHTDHH 568
>gi|224367282|ref|YP_002601445.1| protein HydA1 [Desulfobacterium autotrophicum HRM2]
gi|223689998|gb|ACN13281.1| HydA1 [Desulfobacterium autotrophicum HRM2]
Length = 464
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 215/457 (47%), Gaps = 64/457 (14%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGC--ITSAETVMLEKQSLD------------------ 80
V S +P KI K C+ C C I S +LE+ ++D
Sbjct: 25 VGAVSGTPGQPHKIDQKKCIICGQCVQICSGYESILEEYAIDRATRLEQRGMLDTVQEPL 84
Query: 81 ----------EFLSNINKGKAV-IISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGV 128
+ L+ + K V ++ +P R +L E FG++ + K+ T L+ LG
Sbjct: 85 FAAHYRGDVKKLLAALEDEKTVTLVQCAPAVRVALGEEFGLAYGVLTPGKMATSLRRLGF 144
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
++DT+ + DLT++E E +AR ++ N LPM +S CPGW+ Y E
Sbjct: 145 DRVYDTNFAADLTIMEEGAELLARLEK---------NEGLPMFTSCCPGWVKYLEDHYPD 195
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 248
+LP++SS KSPQQ G K + + G P +Y V +MPC KK E R+ +D
Sbjct: 196 -LLPHLSSCKSPQQMGGVLFKTYGAELAGVEPGCVYSVAIMPCTCKKYECDRDG----MD 250
Query: 249 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 308
S +RD VD V+TT E+ L++ K + F L + D+ L G+++G
Sbjct: 251 S--SGFRD-------VDLVITTRELAQLLKHKGIKFAGLADGEFDQPLGAYSGAGNIFG- 300
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGF 367
S+GG E R + + G ++ +E +R + FR +E +G LK + G
Sbjct: 301 --STGGVMEAALRSSLELATGVPLD-SVELNYLRGGEGFRVAQVEHQG-VQLKVGIVAGI 356
Query: 368 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIYLEN- 425
Q++ ++ K++ + D+ F+EVM CP GC++GGGQ K P Q + +Y +
Sbjct: 357 QHVAPLLDKIQQGEADFHFIEVMCCPLGCVSGGGQPKTVLPQQRIHATQARKQALYRHDS 416
Query: 426 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L +NP ++ LY ++L P EK+ +H Y
Sbjct: 417 GLELRKSHENPQIQQLYKDFLGAPLGEKSHHLLHINY 453
>gi|374316822|ref|YP_005063250.1| hydrogenase, Fe-only [Sphaerochaeta pleomorpha str. Grapes]
gi|359352466|gb|AEV30240.1| hydrogenase, Fe-only [Sphaerochaeta pleomorpha str. Grapes]
Length = 582
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 218/435 (50%), Gaps = 47/435 (10%)
Query: 49 AEPVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A +SL D C+ C C + E+ D F S + + K V++ ++P R L
Sbjct: 179 APAAMLSLDDSPCVKCGQCAAHCPVGAIYERDETDIFRSAVADPEKKVVVQIAPSIRVGL 238
Query: 105 AEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
+E FG+ S KK+ T L+ +G I DT+ S DLT++E +E + R
Sbjct: 239 SESFGLPSGTVTTKKIYTALRKIGADVIHDTNFSADLTIMEEGSELVNRLT--------- 289
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LP L+S CP WI Y EK +L +SS KSP GA K + QK G P +I
Sbjct: 290 TGGVLPQLTSCCPAWIDYVEKYYPD-LLDNVSSAKSPMMMQGAITKTYYAQKAGIDPAKI 348
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
+ V +MPC KK E R+D + Q Y P+VD VLTT E+ LI+ ++
Sbjct: 349 FSVAIMPCTAKKYEIIRDD-----NMQASGY-------PDVDLVLTTRELARLIKSSGMD 396
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F LEE D + G ++ G++GG E R A + K +E +E + +R
Sbjct: 397 FLKLEEEEADSPIGEYSGAGTIF---GATGGVMEAAVRTAYHLVTKKEME-KVEVEAVRG 452
Query: 344 SD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-----YQFVEVMACPSGCL 397
D ++ ++ +G T ++ A+ +G N++ ++ +++ K + Y+F+E+MAC GC+
Sbjct: 453 LDNIKKGTVDFDG-TPVRVAVVHGLSNVKVLMDEIRAAKAEGRTAPYEFIEIMACRGGCI 511
Query: 398 NGGGQIKPKPGQSPKELIKTL-ETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAK 454
GGGQ P + EL K E +Y + + + +NP + +Y+++L +P S +A
Sbjct: 512 AGGGQ----PYGADDELRKERSEGLYQDDKDSKVRCSHQNPSILKIYEDFLTEPMSHEAH 567
Query: 455 KHVHTEYH--PVVKS 467
+HT+YH PV K+
Sbjct: 568 HLLHTKYHEIPVYKA 582
>gi|410464900|ref|ZP_11318286.1| hydrogenase, Fe-only, partial [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981979|gb|EKO38482.1| hydrogenase, Fe-only, partial [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 508
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 178/347 (51%), Gaps = 34/347 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
+C+ C C T ++ + +DE L+ + + K V+ ++P R L E F SP
Sbjct: 191 ECVGCGQCANVCPTGALVPRSEMDEVLAALADPTKTVVAQVAPAVRVGLGECFA-SPAGD 249
Query: 115 -VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ ++ LK LG +++DT+ + DLT+IE EF+ R ++ LP +S
Sbjct: 250 PIMGRMVAALKRLGFDAVYDTTFAADLTVIEEGQEFLTRAAAGEK---------LPQFTS 300
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGW+ +AE+ +L +SS +SPQQ G+ +K + +K G ++ V++MPC
Sbjct: 301 CCPGWVQFAEQSF-PELLKNLSSCRSPQQMFGSLVKEMLPEKQGIARKDLIVVSIMPCTA 359
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA R +F +D P+VD VLTT E+ +I + F ALE LD
Sbjct: 360 KKFEARRPEFA--VDGS-----------PDVDFVLTTQELARMIDGAGLRFNALEPESLD 406
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREVALE 352
G ++ G+SGG E V R AA+ + GK + ++F +R +S RE LE
Sbjct: 407 MPFGFGTGAGVIF---GASGGVTEAVLRFAAEKITGKPL-ASVDFAAVRGDSGLREATLE 462
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNG 399
V GKT L+ A+ +G N + + +V +Y +EVMACP GC+ G
Sbjct: 463 VGGKT-LRLAIVHGLANARAVAEQVVAGTSEYDLIEVMACPGGCIGG 508
>gi|51894427|ref|YP_077118.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
gi|51858116|dbj|BAD42274.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
Length = 456
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 191/380 (50%), Gaps = 35/380 (9%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACN 147
+ V++ ++P R ++AE FG+ PL K+ L+ LG ++ T + DLT++E N
Sbjct: 101 RYVMVQVAPAVRVAIAEEFGM-PLGSLAPGKMAAALRRLGFDRVYSTDFTADLTIMEEGN 159
Query: 148 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207
E I R + +LPM +S CP W+ Y E Q +LP++S+ KSPQQ GA
Sbjct: 160 ELIERVTK---------GGTLPMFTSCCPAWVKYLE-QTYPELLPHLSTCKSPQQMAGAL 209
Query: 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 267
K + + P ++Y V+VMPC K E+ R + + YRD VD V
Sbjct: 210 FKTYGAKVDNVDPAKVYSVSVMPCTCKDFESGRPEM------KASGYRD-------VDVV 256
Query: 268 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 327
+TT E+ LI+ ++F AL E D+ L G ++G ++GG E R A + +
Sbjct: 257 ITTRELAHLIKDAGIDFNALPEEEYDRPLGLYTGAGTIFG---ATGGVMEAALRTAYEVI 313
Query: 328 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
K I L+ K +R + R +++E LK + G +N+ ++ +VK K D+ F
Sbjct: 314 AKKPIP-ELDLKFVRGGEGVRYATVKIE-DLELKVCVVSGLKNVAPVLEQVKAGKADFHF 371
Query: 387 VEVMACPSGCLNGGGQIKP-KPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDE 443
+EVM CP GC++GGGQ K P + E+ Y + L +NP ++ +Y E
Sbjct: 372 MEVMTCPVGCVSGGGQPKALLPSDRLCARMARTESTYRHDAQLPHRKSNENPDIKKIYKE 431
Query: 444 WLEQPGSEKAKKHVHTEYHP 463
+L +P EK+ +HT Y P
Sbjct: 432 FLGKPLGEKSHHLLHTSYTP 451
>gi|168205175|ref|ZP_02631180.1| iron hydrogenase [Clostridium perfringens E str. JGS1987]
gi|168210350|ref|ZP_02635975.1| iron hydrogenase [Clostridium perfringens B str. ATCC 3626]
gi|170663259|gb|EDT15942.1| iron hydrogenase [Clostridium perfringens E str. JGS1987]
gi|170711592|gb|EDT23774.1| iron hydrogenase [Clostridium perfringens B str. ATCC 3626]
Length = 572
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 207/415 (49%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C CI + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCIAACPVDALSEKSHIERVQDALNDPEKHVIVAMAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +SS KSPQQ GA K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSSAKSPQQIFGAASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDGE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + +E
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIKEAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVSGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKMDIREVRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 562
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 200/420 (47%), Gaps = 58/420 (13%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS 111
I +C++C C T ++ + + ++ ++N K V++ ++P R L G
Sbjct: 185 IGHSNCVSCGQCAAVCPTGAIVVRSNTEKLWQDLNNPKKRVVVQIAPAVRVGLGTQLGEE 244
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ L+ +G IFDTS DLT+IE NEF+++ + +N +LP+
Sbjct: 245 DGRNAMGKMAAALRRMGFDKIFDTSVGADLTVIEETNEFVSKLQ---------NNEALPL 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPD--EIYHVTV 228
+S CP W+ YAEK ++ +SS KSP A +K H +R D E+ V +
Sbjct: 296 FTSCCPAWVNYAEKTY-PELMKNVSSCKSPMGMFAAVLKEH------YREDDRELVSVAI 348
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EAARE+F +++G +P+VD V+TT E ++++ + F LE
Sbjct: 349 MPCSAKKFEAAREEF-----------KNDG--VPDVDYVVTTQEFVNMVNESGIAFSELE 395
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR-----HAAKTLFGKVIEGHLEFKTIRN 343
LD+ + G ++GV +GG E V R L EG + ++
Sbjct: 396 PEALDRPFQSCSGAGVIFGV---TGGVTEAVIRKVLSEQPVPALRSFAFEGVRGMEGVKE 452
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ + E+ K A+ G +N NI++ V+ + Y FVEVMACP GC+NG GQ
Sbjct: 453 TTINALDREI------KIAIVSGLKNADNIIKTVRAGEAHYGFVEVMACPGGCINGAGQ- 505
Query: 404 KPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P +E +K +Y + M ++ NPL+ SLY L+ +K + +H Y
Sbjct: 506 ---PFAKAEEKVKRGAQLYKVDKMKSISRSDDNPLMDSLYSGILK----DKTHELLHVHY 558
>gi|71748460|ref|XP_823285.1| iron-containing hydrogenase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832953|gb|EAN78457.1| iron-containing hydrogenase, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 475
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 216/443 (48%), Gaps = 51/443 (11%)
Query: 2 SEKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
+ FS +L + + D+IAPS+ C++ K + D + + E VKI+L+DCLA
Sbjct: 3 ANNFSASLMLAGM-DYIAPSEACILPTKLQGGTSDDSVKRHGAGN---EAVKITLQDCLA 58
Query: 62 CSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQVFKKL 119
CSGC+T+AET+++ QS +E L + ++ + +++S QS AS+A + F +
Sbjct: 59 CSGCVTTAETILITSQSREELLKDRALDPTRPFFVTISDQSAASIAAFLKTDVQRAFHIV 118
Query: 120 TTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 178
+ F ++ L + + D + +++ + E+ R + + LP++ SACPGW
Sbjct: 119 SGFFRAVLNARYVSDLHWALRISVEKTAEEYCRRVRCER--------ERLPLIVSACPGW 170
Query: 179 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 238
+CY EKQ G+ ILP + V SPQ G K I Q + HV+V PC+D+KLEA
Sbjct: 171 VCYCEKQ-GAAILPLLCPVMSPQGIAGCYSKTLIPQ--------MCHVSVQPCFDRKLEA 221
Query: 239 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK---- 294
AR+ E Y D VL+T E+LD + V+ ++PLD
Sbjct: 222 ARDGS----SVSGERY---------TDFVLSTQELLDW--MLEVDPSLPWQAPLDSDLEP 266
Query: 295 --MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVAL 351
+L + + SGGY AA L G ++ + ++ RN++
Sbjct: 267 LPILPPEEPKRSFAATMEGSGGYHRYAMHRAACELHGLELAPRDIHYEMKRNANHHLTTS 326
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMR---KCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ F + YGFQ +QN VR +K + Y F+E+MACP GCLNGGGQ +
Sbjct: 327 PSNPGEV--FCVAYGFQQIQNTVRGIKRKLASVASYTFIELMACPEGCLNGGGQARNGTT 384
Query: 409 QSPKELIKTLETIYLENVMLADP 431
QS E ++ ++ + + P
Sbjct: 385 QSHVETTAAAKSAFISYISGSQP 407
>gi|118444478|ref|YP_878332.1| hydrogenase [Clostridium novyi NT]
gi|118134934|gb|ABK61978.1| hydrogenase [Clostridium novyi NT]
Length = 579
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 198/414 (47%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ L E +D L IN K VI++++P RAS+ E F +S
Sbjct: 195 NCLLCGQCVNICPVAALSETPHIDRVLDAINNPKKHVIVAIAPSVRASIGEAFNMSYGTD 254
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG IFD + DLT++E E + R K +N PM +S
Sbjct: 255 VTYKLYTALRKLGFDKIFDLNFGADLTIVEEAEELVERIK---------NNGPYPMFTSC 305
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
C W+ AE +LP +SS KSPQQ GA K + + P +++ VT+MPC K
Sbjct: 306 CSAWVRQAENYFKE-LLPNLSSTKSPQQIFGAASKTYYPHLMNLDPKDVFTVTIMPCTAK 364
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R++ + +D+VLT E++ +I+ K ++F LE D
Sbjct: 365 KFEAQRDEMAVN-------------GVDSIDAVLTARELIKIIKDKKIDFPNLENGVQDP 411
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R A + L K ++ ++++K +R +E + +
Sbjct: 412 AMGEYSGAGAIF---GATGGVMEAALRTAKELLENKSLD-NIDYKEVRGFKGIKETTVTI 467
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
K A+ G N+ + MRK Y F+EVM+C GC+NGGG P + +E
Sbjct: 468 NNKE-YNLAVINGSSNVFKFINSDMMRKKQYHFIEVMSCEGGCINGGGH--PHVNSTTRE 524
Query: 414 LI--KTLETIYLENVMLADP----FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L+ K L + L N L P +N + +YD ++ +PG++ A K H Y
Sbjct: 525 LVDYKKLRSSVLYNQDLNLPKRKSHENTAIIKMYDNFIGKPGNDFAHKIFHFSY 578
>gi|168213257|ref|ZP_02638882.1| iron hydrogenase [Clostridium perfringens CPE str. F4969]
gi|168216689|ref|ZP_02642314.1| iron hydrogenase [Clostridium perfringens NCTC 8239]
gi|169347026|ref|ZP_02865968.1| iron hydrogenase [Clostridium perfringens C str. JGS1495]
gi|422347408|ref|ZP_16428320.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
gi|422875292|ref|ZP_16921777.1| iron hydrogenase [Clostridium perfringens F262]
gi|169296709|gb|EDS78838.1| iron hydrogenase [Clostridium perfringens C str. JGS1495]
gi|170715282|gb|EDT27464.1| iron hydrogenase [Clostridium perfringens CPE str. F4969]
gi|182381184|gb|EDT78663.1| iron hydrogenase [Clostridium perfringens NCTC 8239]
gi|373224706|gb|EHP47043.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
gi|380303822|gb|EIA16118.1| iron hydrogenase [Clostridium perfringens F262]
Length = 572
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 207/415 (49%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C CI + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCIAACPVDALSEKSHIERVQEALNDPEKHVIVAMAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +SS KSPQQ GA K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSSAKSPQQIFGAASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDGE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + +E
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIKEAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVSGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKMDIREVRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|110799871|ref|YP_697035.1| iron hydrogenase [Clostridium perfringens ATCC 13124]
gi|4239873|dbj|BAA74726.1| hydrogenase [Clostridium perfringens]
gi|7959055|dbj|BAA95936.1| hydrogenase [Clostridium perfringens]
gi|110674518|gb|ABG83505.1| iron hydrogenase [Clostridium perfringens ATCC 13124]
Length = 572
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 207/415 (49%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C CI + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCIAACPVDALSEKSHIERVQEALNDPEKHVIVAMAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +SS KSPQQ GA K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSSAKSPQQIFGAASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDGE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + +E
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIKEAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVSGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKMDIREVRASVLYNQDKNLEKRKSHQNSALLKMYESYMGKPGHGRAHELLHMKY 570
>gi|18311328|ref|NP_563262.1| iron hydrogenase [Clostridium perfringens str. 13]
gi|4239897|dbj|BAA74738.1| hydrogenase [Clostridium perfringens]
gi|18146011|dbj|BAB82052.1| hydrogenase [Clostridium perfringens str. 13]
Length = 572
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 207/415 (49%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C CI + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCIAACPVDALSEKSHIERVQDALNDPEKHVIVAMAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +SS KSPQQ GA K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSSAKSPQQIFGAASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDGE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + +E
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIKEAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVSGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKIDIREVRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|340923959|gb|EGS18862.1| ferredoxin hydrogenase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 609
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 225/505 (44%), Gaps = 115/505 (22%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSK----------QQAEPVKI 54
S L DL+DFI+P C+ ++ T P + ++SS+ Q P +I
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIE--TIPAPQQDATTSSSEPEVILDGQQPQPRAPAQI 58
Query: 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAV---------------------- 92
SL DCLACSGC+TSAE V++ QS E LS ++ A+
Sbjct: 59 SLTDCLACSGCVTSAEAVLVSLQSHAEVLSVLDAAPALELVYDKQSGSVGVRGLENPDSK 118
Query: 93 --IISLSPQSRASL------AEHFG--ISPLQVFKKLTTFLKSL-----------GVKSI 131
I S+SPQ+RASL H G ++ Q + + G I
Sbjct: 119 LLIASVSPQTRASLAAAASLGHHAGKRVTDQQAGWMIEHLFRGERGLRQGGKFKNGFTWI 178
Query: 132 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 191
DT+ +R+ L+ +E + Q + P+L+++CPGW+CYAEK ++L
Sbjct: 179 VDTNAAREACLLLGADEVL---DQQGSAATNTGKVIAPVLTASCPGWVCYAEKTH-PHVL 234
Query: 192 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 251
P++S VKSPQ G +K + + LG P I+H+ +MPC+DKKLEA+RE+ +
Sbjct: 235 PHLSRVKSPQALTGTLLKTTLSRILGIPPSRIWHLAIMPCFDKKLEASREELTDAVWGNN 294
Query: 252 ETYRD---------EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKMLTNVDD 301
T D +G +VD V+T+ E+L L + ++F + S P + D
Sbjct: 295 STAMDFTTGGIGKSKGKGARDVDCVITSKEILMLAASRDLDFFDMPRSAPPSEQPAFPDP 354
Query: 302 EGHLYGV------------AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE- 348
H + AG+SGG + T+ + ++ RN+D E
Sbjct: 355 IIHRFLFPSSSRHRKQPRDAGTSGGNLFFILH----TIQSRHPGSQIQTTRGRNADVVEF 410
Query: 349 -VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------- 382
V G+ L + A YGF+N+QN+VRK+K K
Sbjct: 411 SVVQPSSGEILFRAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSARRPTLGVAGSRSA 470
Query: 383 ---DYQFVEVMACPSGCLNGGGQIK 404
DY +VEVMACP GC NGGGQIK
Sbjct: 471 TGLDYGYVEVMACPGGCTNGGGQIK 495
>gi|376261994|ref|YP_005148714.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
gi|373945988|gb|AEY66909.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
Length = 562
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 202/414 (48%), Gaps = 46/414 (11%)
Query: 40 QVSTSSKQQAEPVKISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLS 97
QV+T+ + + V DC+ C C + ++ K+ +D + NK K VI ++
Sbjct: 174 QVTTAFNKSLQEV-----DCVNCGQCRVVCPTGALMIKKDIDRAYEALQNKNKRVIAQIA 228
Query: 98 PQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
P R ++ E FG+ P ++ K+ L+ LG +FDT+ DLT+IE E + R ++
Sbjct: 229 PAVRVAIGEDFGLQPGEISMGKIVAALRKLGFDQVFDTAVGADLTVIEEAEELMDRIQRK 288
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
++ LP+ SS CP W YAE Q ++ +SS SPQQ GA IK ++
Sbjct: 289 EK---------LPLFSSCCPAWFKYAE-QKHPELMENVSSCLSPQQMFGAVIKEQFKKEQ 338
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
E + +MPC KK EA+R + + Q VD V+TT E+ +
Sbjct: 339 SSNEKENIVIAIMPCTAKKYEASRPENTINGERQ-------------VDMVITTQELAIM 385
Query: 277 IQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL 336
IQ + F LE+ +D G ++GV SGG +E V R+ K ++G +
Sbjct: 386 IQENGIVFNELEDEAIDMPFGFTSGAGVIFGV---SGGVSEAVLRYYYKERNASTLKG-I 441
Query: 337 EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
+ +R + +E E++G+T+ + + +G +N + ++RK+K + + F+EVMACP G
Sbjct: 442 SYSGVRGMEGVKEATAEIDGRTV-RIGVVHGLKNAEKLIRKIKRGEEKFDFIEVMACPGG 500
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWL 445
C+ G GQ P+ E ++ L + V + P K NP + +LY+ L
Sbjct: 501 CIGGAGQPIPQ-----NENVRKLRAKGIYKVDKSLPIKRSDDNPTIDALYNGIL 549
>gi|339501342|ref|YP_004699377.1| hydrogenase, Fe-only [Spirochaeta caldaria DSM 7334]
gi|338835691|gb|AEJ20869.1| hydrogenase, Fe-only [Spirochaeta caldaria DSM 7334]
Length = 581
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 203/424 (47%), Gaps = 40/424 (9%)
Query: 49 AEPVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
A V + C+ C C + E+ + + + NK ++ ++P R +L E
Sbjct: 179 AADVPLGESPCIKCGQCSAHCPVGAIYERDDTRKVWAALQNKDIHPVVQIAPAVRVALGE 238
Query: 107 HFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
FG+ P + KK+ L+ LG K++FDT+ + DLT++E E + R + +
Sbjct: 239 EFGLEPGTIITKKIYAALRRLGFKTVFDTNFAADLTIMEEGTELVKRLTEGK-------- 290
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225
+P+++S CP W+ Y EK I P+ S+ KSPQQ +GA IK + QK G P +++
Sbjct: 291 GDIPLITSCCPAWVDYLEKYYPEMI-PHFSTAKSPQQMMGAMIKAYWAQKAGVDPAKVFS 349
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
V++MPC KK E R D D + Y+D VD +TT E+ +I+ ++
Sbjct: 350 VSIMPCTAKKWEIDRND-----DMKSSGYQD-------VDVSITTRELARMIKQAGIDIL 397
Query: 286 ALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-S 344
L + D L G ++ G++GG E R A L K G + F R
Sbjct: 398 NLPDEEADSPLGPYTGAGTIF---GATGGVMEAAVR-TAYFLVTKKEMGDVNFIPARGLQ 453
Query: 345 DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-----DYQFVEVMACPSGCLNG 399
+E +++ G T ++ A+ + N+ ++ K+K K Y FVEVMAC GC+ G
Sbjct: 454 GVKEAEVDMNG-TKIRIAVAHQMGNIAAVLEKIKEAKAAGKETPYHFVEVMACRGGCIAG 512
Query: 400 GGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GGQ G + + K + IY E +NP ++ +YDE+L +P KA + +
Sbjct: 513 GGQ---PYGCTDEVRSKRIAGIYADDEKSTYRCSHQNPFIKQVYDEFLGEPNDHKAHELL 569
Query: 458 HTEY 461
HT Y
Sbjct: 570 HTHY 573
>gi|183013539|gb|ACC38291.1| Fe-hydrogenase [Clostridium perfringens]
Length = 572
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 208/415 (50%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C C+ + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCVAACPVDALSEKSHIERVQDALNDPEKHVIVAIAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRKLGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +S+ KSPQQ G+ K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSTAKSPQQIFGSASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+S
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDSE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + RE
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIREAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVSGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKIDIREVRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|182625781|ref|ZP_02953548.1| iron hydrogenase [Clostridium perfringens D str. JGS1721]
gi|177908937|gb|EDT71424.1| iron hydrogenase [Clostridium perfringens D str. JGS1721]
Length = 572
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 207/415 (49%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C CI + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCIAACPVDALSEKSHIERVQDALNDPEKHVIVAMAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRELGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +S+ KSPQQ GA K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSTAKSPQQIFGAASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDGE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + +E
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIKEAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVSGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKMDIREVRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|357039139|ref|ZP_09100934.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
gi|355358603|gb|EHG06369.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
Length = 572
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 198/409 (48%), Gaps = 36/409 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T L E D+ IN K V++ +P R +L E FG+ P +
Sbjct: 188 CTYCGQCVMVCPTAALTEAFHCDKVWEAINDPDKYVVVQTAPAIRVALGELFGMEPGTIV 247
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ T LK +G ++FDT+ DLT++E +E I R K +N +LP+L++ C
Sbjct: 248 TGKMVTALKRMGFDAVFDTNFGADLTIMEEASELIYRLK---------NNKTLPILTNCC 298
Query: 176 PGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
P W+ + E Q I +P S+ KSP +G K + +K G PD I V+VMPC K
Sbjct: 299 PAWVKFIEHQFPELIHVP--STCKSPHIMLGTIAKTYYAEKKGLDPDNIVVVSVMPCIAK 356
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + +DE VD V+TT E+ +I+ + F L +S D
Sbjct: 357 KAEAKRPELT----------KDEH---NNVDIVITTRELGAMIKEAGIEFVKLPDSKFDS 403
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
L ++G AG G E R A++ + GK ++ +EF+ +R + A
Sbjct: 404 PLGEATGASVIFGTAG---GVIEAALRTASEWMTGKPLD-KVEFEELRGMEGVRRATVKI 459
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK + G N ++I+ ++ K +Y +E+MACP GC+ GGGQ P + + +
Sbjct: 460 GDQELKIGIASGLGNARHILEDIRDGKANYHAIEIMACPGGCIAGGGQ--PYHHGNDEVI 517
Query: 415 IKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K E IY E N + +N + LY +L +P ++A + +HT +
Sbjct: 518 KKRREAIYAEDRNKKVRKSHENKEILELYKNYLGEPFGKRAHELLHTHF 566
>gi|332296990|ref|YP_004438912.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168]
gi|332180093|gb|AEE15781.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168]
Length = 580
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 41/378 (10%)
Query: 94 ISLSPQSRASLAEHFGISPLQVF--KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 151
+ ++P RA+L E F + P+ +K+ T L+ +G K +FDT+ + DLT++E E +
Sbjct: 226 VQIAPSVRAALGEEFDL-PVGTITTQKIYTALRMMGFKYVFDTNFAADLTIMEEGTELVE 284
Query: 152 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 211
R + +LPM +S CPGW+ YAEK +LP++S+ KSPQQ GA K +
Sbjct: 285 RLTK---------GGALPMFTSCCPGWVDYAEKHYHD-MLPHLSTAKSPQQMQGAVTKTY 334
Query: 212 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 271
++ G +P++I+ V++MPC K EA R D D + D VD VLTT
Sbjct: 335 WAEQAGLKPEQIFSVSIMPCTAKAYEARRND-----DMKSSGASD-------VDLVLTTR 382
Query: 272 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 331
E+ LI+ ++F LEES D L G ++ G++GG E R A L K
Sbjct: 383 ELAMLIRQAGIDFVNLEESAADNPLGPYSGAGTIF---GATGGVMEAAVR-TAYALVTKK 438
Query: 332 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-----MRKCDYQ 385
G++ +R + + ++++G T ++ A+ + N+ +V++V+ ++ Y
Sbjct: 439 ELGNINLTPVRGLEAVKASEIDLDG-TKIRVAVVHQMGNVDKVVQQVREALAAGKEPPYH 497
Query: 386 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 443
F+EVMAC GC+ GGGQ G + + K +Y ++ + KNP + LYD
Sbjct: 498 FIEVMACRGGCVAGGGQ---PYGATDEVRSKRAAALYRDDDDCAVRVSHKNPEIVKLYDR 554
Query: 444 WLEQPGSEKAKKHVHTEY 461
+L +P SEK+ +HT+Y
Sbjct: 555 FLGKPCSEKSHHLLHTKY 572
>gi|114566548|ref|YP_753702.1| iron hydrogenase small subunit [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337483|gb|ABI68331.1| iron hydrogenase, small subunit [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 574
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 216/413 (52%), Gaps = 43/413 (10%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS----P 112
C+ C CI + + E++ +DEFL+ + N K VI ++P R ++AE G+ P
Sbjct: 189 CVMCGQCIHACPVGAIGEREQIDEFLAAVANPDKVVITQIAPAVRVAIAEEIGMMTGELP 248
Query: 113 LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ F + L+ +G + T+ + DLT++E NE + R K+ +LPM +
Sbjct: 249 MGTFVQ---GLRQIGFDHVLHTNFTADLTILEEGNELLKRLKEG---------GTLPMFT 296
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S PGWI + E +L +S+ KSPQQ GA K + +K+G P +IY V++MPC
Sbjct: 297 SCSPGWINFCE-TFYPDLLDNLSTCKSPQQMFGALAKTYWAEKMGIDPSKIYSVSIMPCV 355
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EAAR + + Y+D VD VLTT E+ L ++ ++F L S
Sbjct: 356 AKKFEAARPEM------NDSGYQD-------VDLVLTTREIGRLFRMSGLDFSKLPASDF 402
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVAL 351
D + ++ G+SGG E R + + GK +E + F R + +E +
Sbjct: 403 DSWMGKYTGAAVIF---GASGGVMEAALRTVYEVVTGKTLE-DVNFVATRGITGIKEATV 458
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
+++G T++K A+ G N + ++ +V+ + Y F+E+MACP GC+ GGGQ K +
Sbjct: 459 DLDG-TVVKVAIANGLANARKLMEQVRAGESPYHFIEIMACPGGCIGGGGQPITK---AN 514
Query: 412 KELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ ++ +E IY+E+ + L NP V++LY+E+L +P K+ + +HT YH
Sbjct: 515 VKRVERIEAIYVEDEGLPLRKSHDNPEVKTLYEEFLHEPLGHKSHELLHTHYH 567
>gi|402571252|ref|YP_006620595.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
gi|402252449|gb|AFQ42724.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
Length = 580
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 207/416 (49%), Gaps = 39/416 (9%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS 111
+S C C CI T + E +D+ +N + V++ +P R +L E FG+
Sbjct: 190 LSKTACTFCGQCIAVCPTGALTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEGFGLE 249
Query: 112 PLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + K+ L+ LG +FDT + DLT++E E + R + LP+
Sbjct: 250 PGTIVTGKMVAALRRLGFDRVFDTDFAADLTIMEEATELVHRIQH---------GGRLPL 300
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E Q +L S+ KSP + +G IK + + LG P I V+VMP
Sbjct: 301 LTSCCPAWVKFFEHQFPD-LLDIPSTCKSPHEMLGVLIKSYYAKTLGIDPKTITVVSVMP 359
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EAAR + +G E +VD V+TT E+ +I+ +++F+ L+E
Sbjct: 360 CVAKKYEAARPEL------------SQGAETADVDIVITTRELARMIREASIHFDNLKEQ 407
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D L ++G ++GG E R A + L G+ +E +EF+ +R D +E
Sbjct: 408 EFDHPLGESTGASVIFG---TTGGVLEAALRTAYEVLTGETLE-KVEFEVLRGMDGLKEA 463
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ + G+ + A+ +G N + I+ K++ + DY +E+MACP GC+ GGGQ P
Sbjct: 464 VVPIAGRDY-RAAVVHGLGNARTILEKIQAGESDYDVIEIMACPGGCIGGGGQ--PYHHG 520
Query: 410 SPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L E +Y E+ A P + NP + LY ++L +P E+A K +HT Y
Sbjct: 521 NLEILSSRAEALYRED--RAKPLRKSHENPAIIGLYKDFLGEPYGERAHKLLHTSY 574
>gi|346307786|ref|ZP_08849916.1| hypothetical protein HMPREF9457_01625 [Dorea formicigenerans
4_6_53AFAA]
gi|345904744|gb|EGX74488.1| hypothetical protein HMPREF9457_01625 [Dorea formicigenerans
4_6_53AFAA]
Length = 577
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 209/418 (50%), Gaps = 37/418 (8%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I DC C CIT L E+ +E I + K V+ ++P RA+ E G++
Sbjct: 183 IREADCALCGQCITHCPVGALRERSDTNEVWKAIEDPDKIVVAQVAPAVRAAWGEELGLA 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P K+ LK +G+ +FDT+ S DLT++E NEF+ R+ + D PM
Sbjct: 243 PEDATVGKIIDALKRMGINYVFDTTFSADLTIMEEGNEFVKRFTSGELKDR-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ Y+SS KSPQQ GA +K + +KLG P++IY V+VMP
Sbjct: 296 FTSCCPGWVRFIKSQF-PHLVKYLSSAKSPQQMFGAVMKTYFAEKLGVSPEKIYTVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E ++D E Y ++D+V+TT E++ +I+ ++ + L +
Sbjct: 355 CVAKKAER-------EMDLYYEEYAGH-----DIDAVITTRELIRMIRSAHISPQTLVDV 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDF---- 346
D+ + G ++ G++GG E R A + G+ F +R+ F
Sbjct: 403 ESDRPMHEGTGAGVIF---GATGGVMEAALRSAYYIIKGENPPAE-AFTAVRSQGFNEND 458
Query: 347 --REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
+E ++ T ++ A+ G N + ++RK++ + Y FVEVMACP GC+ GGGQ
Sbjct: 459 GVQEANFQINDIT-VRTAVVSGLGNTRELIRKIESGEVHYDFVEVMACPGGCVGGGGQ-- 515
Query: 405 PKPGQSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + + YL+ N L +NP V +Y E+ E P S KA +HTE+
Sbjct: 516 PIHDGEERAFERGKNLYYLDRNANLRFSHENPDVIQMYKEYFEAPMSHKAHMLLHTEH 573
>gi|220931477|ref|YP_002508385.1| NADH dehydrogenase (ubiquinone) 75 kDa subunit [Halothermothrix
orenii H 168]
gi|219992787|gb|ACL69390.1| NADH dehydrogenase (ubiquinone) 75 kDa subunit [Halothermothrix
orenii H 168]
Length = 578
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 215/413 (52%), Gaps = 39/413 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C C CI + L EK ++ + N K V++ +P R S+ E FG+ P V
Sbjct: 190 CANCGQCINACPVGALSEKDDTEKVWEALANPDKHVVVQTAPAVRVSIGEVFGMKPGSLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KL L+ LG +FDT+ + DLT++E +E I R K +N LP+++S
Sbjct: 250 TGKLMAGLRRLGFDKVFDTNFTADLTIMEEGHELIERLK---------NNERLPLITSCS 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E SY L +ISS KSPQQ GA K + + G P++++ V+VMPC KK
Sbjct: 301 PGWIKFIEHFYPSY-LEHISSCKSPQQMFGALAKTYYPENNGIDPEDVFVVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R +DS Y+D VD VLTT E+ + + ++F L + DK
Sbjct: 360 FEITRPG----MDSS--GYQD-------VDVVLTTRELAKMFKQAGIDFVNLPDEEYDKP 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L G ++ G++GG E R A + L G+ + G LEF+ +R + +E +E+
Sbjct: 407 LGISTGAGTIF---GTTGGVMEAALRTAYEVLTGEELPG-LEFEDVRGLEGIKECEIEIN 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ +K A+ +G N +++ + DY F+E+MACP GC+ GGGQ P ++ +
Sbjct: 463 GQK-IKVAVAHGLSNAHKVLQNID----DYHFIEIMACPGGCVGGGGQPYPTNEETIRLR 517
Query: 415 IKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
+ L E+ + +NP+V+ LY+E+L +P S K+ + +HT Y VV+S
Sbjct: 518 AQGLYRDDKEH-QIRKSHENPVVKKLYEEFLGKPLSHKSHELLHTGY--VVRS 567
>gi|374339987|ref|YP_005096723.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
gi|372101521|gb|AEX85425.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
Length = 569
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 207/410 (50%), Gaps = 41/410 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV 115
DC C C+ + T L E +D + +N K I+ +P R ++ E FG+ P +
Sbjct: 191 DCTNCGQCVMNCPTGALHEVYHIDGVWNALNDPEKVTIVQTAPAVRVAIGEPFGMEPGTI 250
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
KL L+ LG +FDT+ + DLT++E EFI R+K+ LP+ +S
Sbjct: 251 STGKLVAALRLLGFDKVFDTNFTADLTIVEEGTEFIHRFKEG---------GKLPLFTSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E Y LP++SS KSPQQ GA KH+ +KLG +++ V++MPC K
Sbjct: 302 SPGWIKFIEHNYPEY-LPHLSSAKSPQQMFGAVAKHYYAKKLGIPKEKLVVVSIMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R + +VD VLTT E+ +I+ ++F+ L E D
Sbjct: 361 KYEMNRPEHA-----------------GDVDFVLTTRELAKMIKESGIDFKNLPEEEYDN 403
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDF-REVALEV 353
G ++ G+SGG E R A + L G+ +E L+F +R D +E +E+
Sbjct: 404 PFGISTGAGAIF---GASGGVMEAALRTAYEILTGRELE-KLDFTAVRGLDMVKEAEVEI 459
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
GK ++K A+ + ++ ++K + +Y FVE MACP GC+ GGGQ P + +
Sbjct: 460 NGK-IIKVAVVNTLGAARKLLERMKNGEVEYHFVEFMACPGGCIGGGGQPIP---TTEEI 515
Query: 414 LIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L+K +E IY + L +NP V+ LY E+L +P SE A +HT Y
Sbjct: 516 LLKRMEAIYEIDYGSKLRKSHENPAVKELYKEFLGEPNSEIAHHLLHTHY 565
>gi|259511275|sp|A6ZRK3.1|NAR1_YEAS7 RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|151944307|gb|EDN62585.1| nuclear architecture related [Saccharomyces cerevisiae YJM789]
Length = 491
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 227/482 (47%), Gaps = 83/482 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYVVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK + P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R E+ D +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRP----------ESLGDG------IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMIVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 ----------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLAD 430
++EV ACP C+NGGG + + K+L++TL + E + + D
Sbjct: 392 AAVAAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVD 451
Query: 431 PF 432
P
Sbjct: 452 PL 453
>gi|349580709|dbj|GAA25868.1| K7_Nar1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 491
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 227/482 (47%), Gaps = 83/482 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L DCL
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK + P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R E+ D +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRP----------ESLGDG------IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMMVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 ----------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLAD 430
++EV ACP C+NGGG + + K+L++TL + E + + D
Sbjct: 392 AAVAAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVD 451
Query: 431 PF 432
P
Sbjct: 452 PL 453
>gi|410658229|ref|YP_006910600.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|410661215|ref|YP_006913586.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
gi|409020584|gb|AFV02615.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|409023571|gb|AFV05601.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
Length = 594
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 203/409 (49%), Gaps = 36/409 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T L E D+ +N K VI+ +P R ++ E F + P +
Sbjct: 210 CTYCGQCVQVCPTAALTEINHTDKVWEALNNPDKYVIVQTAPAIRVAIGEIFDMEPGTIA 269
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+L T LK +G ++FDT DLT++E +E I R + +N +LP+L+S C
Sbjct: 270 TGQLVTALKRIGFNAVFDTDFGADLTIMEEASELIYRLQ---------NNKTLPILTSCC 320
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP G +K + +K G PD I V+VMPC KK
Sbjct: 321 PAWVKFIEHQFPE-LLEVPSTCKSPHIMFGTIVKTYYAEKNGIDPDNIVVVSVMPCIAKK 379
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + +DE VD V+TT E+ +I+ ++F L S DK
Sbjct: 380 AEAKRPELT----------KDEH---NNVDIVVTTRELGLMIKEAGLDFSNLPSSEYDKS 426
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREVALEVE 354
L ++G +SGG E R A + L G+ ++ +EF+ +R + R+ +++
Sbjct: 427 LGETTGASVIFG---TSGGVIEAALRTAYEWLTGEELQ-KVEFEQLRGDGGLRKATVQI- 481
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G +L+ + G N + ++ +++ K Y+ +E+MACP GC+ GGGQ P + + +
Sbjct: 482 GDKMLRIGIASGLGNARTLLEEIRDGKNQYEAIEIMACPGGCVAGGGQ--PYHHGNFEIV 539
Query: 415 IKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K E IY E N + +N ++ LY E+L QP S+ A + +HT +
Sbjct: 540 RKRQEAIYQEDKNKKIRKSHENSEIQKLYQEYLGQPFSDTAHRLLHTHF 588
>gi|239616580|ref|YP_002939902.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1]
gi|239505411|gb|ACR78898.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1]
Length = 584
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 215/424 (50%), Gaps = 37/424 (8%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS 111
I+ DC+ C C T + E+ + K K +++ +P R +L E FG
Sbjct: 184 IAATDCINCGQCATVCPVGAITERMDFRRVAEELYKHEKVLVVQTAPAVRVALGEEFGEE 243
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + K+ L+ LG +FDT + DLT++E +E + R K+ PM
Sbjct: 244 PGTISTGKMVAALRKLGFDYVFDTDFAADLTIMEEGSELLQRIKE---------GGKFPM 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ EK L +S+ KSP + +GA IK + +K+G P +I+ V+VMP
Sbjct: 295 FTSCCPGWVNLMEK-LYPEFRENLSTAKSPHEMLGALIKTYFAKKIGKDPKDIFVVSVMP 353
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE + + VD+V+TT E+ LI++K + +E+L E
Sbjct: 354 CTAKKDEAERETLLVRGHVA-------------VDAVITTRELGKLIKMKKIPYESLPEE 400
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D L ++G ++GG E R A + GK + L+F+ +R + +E
Sbjct: 401 EYDTPLGISTGAAVIFG---ATGGVMEAALRTAYELYTGKELP-KLDFEFVRGFEGVKEA 456
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++GK +LK A+ +G N+ ++ K+K + Y FVE+MACP GC+ GGGQ K
Sbjct: 457 EVDLDGK-ILKVAVAHGGANVVKLMDKIKSGEVYYDFVEIMACPGGCIGGGGQPK---ST 512
Query: 410 SPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
P L + ++ IY EN+ + +NP ++ +Y+E+LE P S + + +HT Y KS
Sbjct: 513 RPDYLERRMQAIYEIDENMPIRKSHENPAIKKIYEEYLEHPLSHISHELLHTHYLDRKKS 572
Query: 468 ITAQ 471
+ +
Sbjct: 573 VVER 576
>gi|410657515|ref|YP_006909886.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|410660552|ref|YP_006912923.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
gi|409019870|gb|AFV01901.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|409022908|gb|AFV04938.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
Length = 594
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 212/425 (49%), Gaps = 42/425 (9%)
Query: 54 ISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS 111
I+ +C C C + + E ++ + IN K V++ ++P RA++ E FG+
Sbjct: 183 INSVNCAYCGQCTVVCPVGALKETDAIQDVWQAINDPNKRVVVQVAPAIRAAIGEEFGLE 242
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V KL + L+ LG +FDT+ + DLT++E EF+ R K + ++LPM
Sbjct: 243 PGTLVTGKLASALRELGFDDVFDTNFTADLTIMEEGTEFLTRVKNALTG----GQATLPM 298
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S PGWI Y E L ++S+ KSP +GA K + K+ P ++Y V++MP
Sbjct: 299 ITSCSPGWIKYVEHAYPEE-LDHLSTCKSPHTMLGALAKSYYADKIEVDPKDMYVVSIMP 357
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E +R + ++ G +P VD+VLTT E+ +I+ ++F LE+S
Sbjct: 358 CTAKKFEVSRPEM-----------QNNG--VPNVDAVLTTRELAKMIKEAGIDFVNLEDS 404
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI---EGHLE----FKTIRN 343
D L ++GV +GG E R + + G+ + + H+ + I+
Sbjct: 405 KFDNPLGLSSGAADIFGV---TGGVMEAALRTVYEVVTGRELPFDKLHVTPIVGLEQIKT 461
Query: 344 SDF-----REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 398
+D E ++G T +K A+ G + ++ ++ + Y F+EVM CP GC++
Sbjct: 462 ADVIIENPVEAYKFLDGVT-VKVAVTSGLAGAKILLDQIAKGESPYHFIEVMGCPGGCIS 520
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 456
GGGQ +P +P+ K L+ IY E+ L +N V LY E+L++P K+ +
Sbjct: 521 GGGQPRP---TTPEIRQKRLQAIYKEDEGKQLRKSHENEDVMKLYAEFLKEPNGHKSHEL 577
Query: 457 VHTEY 461
+HT Y
Sbjct: 578 LHTYY 582
>gi|381166630|ref|ZP_09875844.1| Hydrogenases, Fe-only [Phaeospirillum molischianum DSM 120]
gi|380684203|emb|CCG40656.1| Hydrogenases, Fe-only [Phaeospirillum molischianum DSM 120]
Length = 606
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 39/418 (9%)
Query: 54 ISLKD--CLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFG 109
+S KD C+ C C+ T L E+ D L + + V + +P R E FG
Sbjct: 193 LSQKDSTCVTCGQCVMVCPTGALGERDETDTVLDFLFDSEIVTVFQFAPAVRVGFGEEFG 252
Query: 110 ISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
+ P V ++ L+ LG + DT+ + D+ ++E E + R +
Sbjct: 253 LPPGTNVEGRIIGALRRLGADIVLDTNFAADVVVMEESAELLGRLAGKRR---------- 302
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P +S CP WI +AE+ +LP +SS KSPQQ +G K ++ +++G P I +++
Sbjct: 303 PTFTSCCPAWINFAERHYPD-LLPMLSSTKSPQQCLGKIAKTYLPERMGIDPARIRVISI 361
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK E R + G + E+D VLTT E L++ + ++ + E
Sbjct: 362 MPCTAKKDERVRPQLA-----------ENG--VSEIDVVLTTREFARLLKRQGIDLRSQE 408
Query: 289 ESPLDK-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-F 346
S D ++ G ++G ++GG E R + G+ + +E +R D
Sbjct: 409 PSVFDNPYMSAYSGAGAIFG---TTGGVMEAAVRTMYQIANGRELP-QIELSQLRGFDGA 464
Query: 347 REVALEVEGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
R +EV G +K A+C+G + +++ V+ D+ F+E+MACP GC++GGG ++
Sbjct: 465 RTATIEVGGTIGTVKVAMCHGLRPTRDLCEAVRAGTADFDFIEIMACPGGCVDGGGNLRS 524
Query: 406 KPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K P L K E+++ + + NP V++LY ++LE+P SEKA +HT Y
Sbjct: 525 KKAYLPYAL-KRRESLFAIDRSTAVRQSHNNPQVQALYRDFLERPYSEKAHHLLHTYY 581
>gi|166031621|ref|ZP_02234450.1| hypothetical protein DORFOR_01321 [Dorea formicigenerans ATCC
27755]
gi|166028598|gb|EDR47355.1| hydrogenase, Fe-only [Dorea formicigenerans ATCC 27755]
Length = 577
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 209/418 (50%), Gaps = 37/418 (8%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I DC C CIT L E+ +E I + K V+ ++P RA+ E G++
Sbjct: 183 IREADCALCGQCITHCPVGALRERSDTNEVWKAIEDPDKIVVAQVAPAVRAAWGEELGLA 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P K+ LK +G+ +FDT+ S DLT++E NEF+ R+ + D PM
Sbjct: 243 PEDATVGKIIDALKRMGINYVFDTTFSADLTIMEEGNEFVKRFTSGELKDR-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ Y+SS KSPQQ GA +K + +KLG P++IY V+VMP
Sbjct: 296 FTSCCPGWVRFIKSQF-PHLVKYLSSAKSPQQMFGAVMKTYFAEKLGVSPEKIYTVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E ++D E Y ++D+V+TT E++ +I+ ++ + L +
Sbjct: 355 CVAKKAER-------EMDLYYEEYAGH-----DIDAVITTRELIRMIRSAHISPQTLVDV 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDF---- 346
D+ + G ++ G++GG E R A + G+ F +R+ F
Sbjct: 403 ESDRPMHEGTGAGVIF---GATGGVMEAALRSAYYIIKGENPPAE-AFTAVRSQGFNEND 458
Query: 347 --REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
+E ++ T ++ A+ G N + ++RK++ + Y FVEVMACP GC+ GGGQ
Sbjct: 459 GVQEANFQINDIT-VRTAVVSGLGNTRELIRKIESGEVHYDFVEVMACPGGCVGGGGQ-- 515
Query: 405 PKPGQSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + + YL+ N L +NP V +Y E+ E P S KA +HTE+
Sbjct: 516 PIHDGEERAFERGKNLYYLDRNANLRFSHENPDVIQMYKEYFEAPMSHKAHMLLHTEH 573
>gi|332654613|ref|ZP_08420356.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16]
gi|332516577|gb|EGJ46183.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16]
Length = 696
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 198/378 (52%), Gaps = 24/378 (6%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
K V++S SP RA+L E FG+ P V K+ L++LGV + DT+ + DLT++E +E
Sbjct: 103 KVVVVSTSPAVRAALGEEFGMEPGAFVEGKMVALLRALGVDYVLDTNFAADLTIVEEASE 162
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
I R + + LP +S CPGW+ + E +LP++S+ KSP G T+
Sbjct: 163 LIRRITEK--------DRPLPQFTSCCPGWVHFTEI-YAPELLPHLSTAKSPIGMQGPTV 213
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K + +++G P +I HVT+ PC KK E RE+ + + + + +G+ + D V+
Sbjct: 214 KTYFAKQMGLDPRQIVHVTLTPCTAKKFEVRREE----MHAAGDYHGIQGMR--DTDQVI 267
Query: 269 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 328
TT E+ + +++ ALE+S D ++ G ++G ++GG E R A L
Sbjct: 268 TTRELARWAKAAGIDWTALEDSAYDSLMGKASGAGVIFG---NTGGVMEAALRTAYAYLT 324
Query: 329 GK-VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 386
GK E L+ +R D RE + + G L+ A+ YG N + + ++K Y F
Sbjct: 325 GKSAPESLLQLDPVRGYDGVREAQVTI-GDLTLQVAVVYGTANARRFLERMKESGKQYHF 383
Query: 387 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEW 444
VEVMACP GC+ GGGQ K + + + +Y + + L +NP ++++Y+ +
Sbjct: 384 VEVMACPGGCIGGGGQPKNLMKNADETRKSRIAALYQRDGSMTLRSSHENPEIKAVYEAF 443
Query: 445 LEQPGSEKAKKHVHTEYH 462
QP SE A++ +HT Y+
Sbjct: 444 YGQPLSELAEQMLHTTYY 461
>gi|313900506|ref|ZP_07833999.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2]
gi|373124465|ref|ZP_09538306.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
gi|422326519|ref|ZP_16407547.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
gi|312954568|gb|EFR36243.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2]
gi|371659433|gb|EHO24698.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
gi|371666098|gb|EHO31255.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
Length = 577
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 211/415 (50%), Gaps = 37/415 (8%)
Query: 54 ISLKDCLACSGCITS--AETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
I +C C CIT + + + S F + + K I+ ++P RA+ E G+
Sbjct: 183 IEEAECSLCGQCITHCPVNALHVREDSERAFAAFNDPDKITIVQIAPAVRAAWGESLGLR 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ +KL + +G +FDT + DLT++E +EF+ R ++E + +PM
Sbjct: 243 REEATIEKLGDAFRRMGADYVFDTDFAADLTIMEEASEFLERLHHNKEQE-------MPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q ++ ++S+ KSP Q GA K +KLG P IY+++VMP
Sbjct: 296 FTSCCPGWVRFLKSQYPD-MVSHLSTSKSPHQMFGAVTKTWFAEKLGVDPSSIYNISVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E D DS YRD VD VLTT EV+ +I + ++ L++
Sbjct: 355 CVAKKHEI---DIPVMNDS---GYRD-------VDVVLTTREVVRMIHAEHIDVGYLQDH 401
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
PLD L G ++ G++GG E R A + G+ + F +R D ++E
Sbjct: 402 PLDDPLGTASGAGVIF---GATGGVMEAALRSAYYFVTGENADAD-AFADVRGMDGWKES 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
E++G ++ A+ G N + ++ ++ ++ Y F+EVMACP GC GGGQ P
Sbjct: 458 TFEIQG-IPVRCAIVSGLGNTRRLIEAMRRKEVAYDFIEVMACPGGCSGGGGQ----PIH 512
Query: 410 SPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+EL + +T+Y N L +NP + +LYDE+L +P SE A+K +HT++
Sbjct: 513 DGEELAAERADTLYHLDRNAKLRYSHENPSIHALYDEYLGKPLSELAEKLLHTDH 567
>gi|300123855|emb|CBK25126.2| Iron-hydrogenase [Blastocystis hominis]
Length = 759
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 211/414 (50%), Gaps = 39/414 (9%)
Query: 56 LKD--CLACSGCITSAETVMLEKQS-LDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
LKD C++C C T + +QS + + + GK +++ +P +R + E+FG P
Sbjct: 195 LKDTECISCGQCNVLCPTGAITEQSHIPRVKAAMRAGKVMVLQTAPATRVAFGENFGREP 254
Query: 113 LQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 171
+V K+ K+LG + +FDT+ D+T++E E + R K + PM
Sbjct: 255 GEVTTGKMVACAKALGFQYVFDTNFGADMTIMEEGTELLERIK---------NKGPFPMF 305
Query: 172 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
+S CPGW+ AEK ++P +SS +SP +G+ +K + +K+ +P++IY V++MPC
Sbjct: 306 TSCCPGWVNMAEKCY-PELIPNLSSCRSPHMMLGSCVKTYWAKKMNLKPEDIYLVSLMPC 364
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI-QLKAVNFEALEES 290
KK E R Q+ E T P VD+VLTT E+ D Q ++++ E
Sbjct: 365 TAKKDEIERR----QMWLNETT--------PTVDAVLTTKELGDFCKQENLTDWDSFAEM 412
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D + G ++GV SGG E R A + GK +E + R D +
Sbjct: 413 DFDSPMGICTGAGDIFGV---SGGVMEAALRTAYELQTGKPLE-KITVDEARGLDGTKRF 468
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++ G T + A+ + + + ++ +K K D QFVEVMACP GC++GGGQ P +
Sbjct: 469 SVDMNG-TKVNCAVVHS-KYARELMENIKAGKEDLQFVEVMACPGGCISGGGQ--PHSNR 524
Query: 410 SPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + K + IY + L +NP ++++Y E+ E+PGS A + +HT Y
Sbjct: 525 A-DTMDKRMNAIYSIDAGKKLRKSHENPDIQTIYKEFFEKPGSHVAHELLHTTY 577
>gi|397906372|ref|ZP_10507181.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
gi|397160592|emb|CCJ34518.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
Length = 579
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 197/415 (47%), Gaps = 43/415 (10%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNI-----NKGKAVIISLSPQSRASLAEHFGISPL 113
C C C++ T L + S +++ + + K VI +P R +L E FG+ P
Sbjct: 194 CTFCGQCVSVCPTAALTEVS---YVAKVWEALHDPDKFVIAQTAPAIRVALGEEFGLEPG 250
Query: 114 QVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ K+ L+ LG + +FDT + D+T++E EFI R K LP+L+
Sbjct: 251 TIVTGKMVAALRRLGFRKVFDTDFAADVTIVEEAKEFIERLK---------GKGRLPILT 301
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CP W+ + E Q +L S+ KSP GA K + +K P++I V+VMPC
Sbjct: 302 SCCPSWVKFIEHQFPE-LLDIPSTCKSPHMMFGAIAKTYFAEKFNIPPEKIVVVSVMPCI 360
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK E R++F E I VD V+TT E +I+ ++F L
Sbjct: 361 AKKYEIQRKEF-------------EENGIKNVDYVITTREFAKMIREAGIDFTKLPNEDF 407
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN--SDFREVA 350
D L ++GV +GG E R A + + G+ +E +EF +R +E
Sbjct: 408 DDPLGESTGASVIFGV---TGGVIEAALRTAYEWITGETLE-KVEFHGVRGLEDGLKEAT 463
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
++++ L K + +G N + ++ ++ K Y +E+MACP GC++GGGQ P +
Sbjct: 464 VKIKDMEL-KIGVAHGLGNARRLLEDIRDGKRFYHAIEIMACPGGCIDGGGQ--PYHHGN 520
Query: 411 PKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L IY E N + +NP V ++Y E++ + G EKA K +HT Y P
Sbjct: 521 LDIVRARLNAIYEEDRNKPIRKSHENPAVIAMYKEYMGEIGGEKAHKLLHTHYTP 575
>gi|302833848|ref|XP_002948487.1| iron hydrogenase [Volvox carteri f. nagariensis]
gi|300266174|gb|EFJ50362.1| iron hydrogenase [Volvox carteri f. nagariensis]
Length = 419
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 207/436 (47%), Gaps = 74/436 (16%)
Query: 79 LDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCS 137
+DE ++ K +I ++P R ++AE FG++P +L L+ LG +FDT
Sbjct: 1 MDELDKPRDQRKIMICQVAPAVRVAIAECFGLAPGATTPGQLAESLRRLGFDLVFDTLYG 60
Query: 138 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYIS 195
DLT++E E I R Q+Q S LPM +S CPGWI EK SY ++PY+S
Sbjct: 61 ADLTIMEEGTELIHRL-QAQLEAHPHSEEPLPMFTSCCPGWIALLEK---SYPELIPYVS 116
Query: 196 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 255
S KSPQ +GA +K ++ +K G P +I V++MPC K+ EA R+ F
Sbjct: 117 SCKSPQMMLGAMVKTYLAEKKGISPSDISMVSIMPCVRKQGEADRDWFC----------- 165
Query: 256 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGY 315
G + +VD V+TT E+ ++++ + +N L E D+ L G ++G ++GG
Sbjct: 166 SGGAGVRDVDHVITTAELGNILKERNINLPELPEGYWDQPLGTGSGAGVIFG---TTGGV 222
Query: 316 AETVFRHAAKTLFGKVIEGHLEFKTIRNSD----------------FREV---------- 349
E R A + + + + L +R D F E+
Sbjct: 223 MEAALRTAYELVTQQPLP-RLNLSEVRGMDGIKETEIKMVPPPGSKFAELVAARAAAKAM 281
Query: 350 --------ALEVEGKT-----------LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
A++ +G + L+ A+ G N + ++ K++ +C Y FVE+M
Sbjct: 282 DEAAASAGAIKWDGGSNFTADDGANGITLRVAVANGLGNAKKLLTKMQTGECKYDFVEIM 341
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQ 447
ACPSGC+ GGGQ P + K++ K + +Y E + +NP +++ Y ++L +
Sbjct: 342 ACPSGCVGGGGQ----PRSTDKQITAKRQQALYNLDERSTIRRSHENPAIQTAYKDFLGE 397
Query: 448 PGSEKAKKHVHTEYHP 463
P +A +HT Y P
Sbjct: 398 PNGPRAHDLLHTHYVP 413
>gi|365831422|ref|ZP_09372974.1| hydrogenase, Fe-only [Coprobacillus sp. 3_3_56FAA]
gi|365261899|gb|EHM91800.1| hydrogenase, Fe-only [Coprobacillus sp. 3_3_56FAA]
Length = 582
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 213/417 (51%), Gaps = 44/417 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
+C+ C CI L EK+ + ++ +N K V++ +P RASL E FG+ P+
Sbjct: 190 NCMQCGQCINVCPVGALQEKEEVHNVIAALNDDSKHVVVQTAPAVRASLGEEFGM-PIGT 248
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+V K+ LK +G ++DT+ DLT++E EFI R ++ LPM++S
Sbjct: 249 RVTGKMVHALKLMGFDRVYDTNFGADLTIMEEGYEFIHRIS---------NDGVLPMITS 299
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGW+ Y E + +L ++SS KSP +G+ IK + ++ P +IY V++MPC
Sbjct: 300 CSPGWVNYIEHEY-PELLDHLSSCKSPHMMLGSMIKSYYAKENNLDPKDIYVVSIMPCVA 358
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ + +GL+ +VD+VLTT E+ LI++ +NF L++ D
Sbjct: 359 KKGEKEREENL-----------TDGLK--DVDAVLTTRELGKLIKMFGINFRDLKDEDFD 405
Query: 294 K-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVAL 351
+ M G ++ G+SGG E R L + + +L++ +R + +E +L
Sbjct: 406 QDMFGEYTGAGVIF---GASGGVMEAALRTVTDVLTKEDLT-NLDYHAVRGEEEVKEASL 461
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPK 406
++ G + A+ + + ++ ++K Y F+E+M CP GC+NGGGQ +
Sbjct: 462 KI-GDMTVNVAVAHSMVLAKPLLEEIKNGTSKYHFIEIMGCPGGCVNGGGQSYVNALTRN 520
Query: 407 PGQSPKELIKTLETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
G K+ + +Y E++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 521 SGFDWKQ--ARAKALYDEDLALPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 575
>gi|237734758|ref|ZP_04565239.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229382086|gb|EEO32177.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 577
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 213/417 (51%), Gaps = 44/417 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
+C+ C CI L EK+ + ++ +N K V++ +P RASL E FG+ P+
Sbjct: 185 NCMQCGQCINVCPVGALQEKEEVHNVIAALNDDSKHVVVQTAPAVRASLGEEFGM-PIGT 243
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+V K+ LK +G ++DT+ DLT++E EFI R ++ LPM++S
Sbjct: 244 RVTGKMVHALKLMGFDRVYDTNFGADLTIMEEGYEFIHRIS---------NDGVLPMITS 294
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGW+ Y E + +L ++SS KSP +G+ IK + ++ P +IY V++MPC
Sbjct: 295 CSPGWVNYIEHEY-PELLDHLSSCKSPHMMLGSMIKSYYAKENNLDPKDIYVVSIMPCVA 353
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ + +GL+ +VD+VLTT E+ LI++ +NF L++ D
Sbjct: 354 KKGEKEREENL-----------TDGLK--DVDAVLTTRELGKLIKMFGINFRDLKDEDFD 400
Query: 294 K-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
+ M G ++ G+SGG E R L + + +L++ +R + +E +L
Sbjct: 401 QDMFGEYTGAGVIF---GASGGVMEAALRTVTDVLTKEDLT-NLDYHAVRGEEGVKEASL 456
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPK 406
++ G + A+ + + ++ ++K Y F+E+M CP GC+NGGGQ +
Sbjct: 457 KI-GDMTVNVAVAHSMVLAKPLLEEIKNGTSKYHFIEIMGCPGGCVNGGGQSYVNALTRN 515
Query: 407 PGQSPKELIKTLETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
G K+ + +Y E++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 516 SGFDWKQ--ARAKALYDEDLALPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 570
>gi|167755791|ref|ZP_02427918.1| hypothetical protein CLORAM_01306 [Clostridium ramosum DSM 1402]
gi|374625084|ref|ZP_09697501.1| hydrogenase, Fe-only [Coprobacillus sp. 8_2_54BFAA]
gi|167704730|gb|EDS19309.1| hydrogenase, Fe-only [Clostridium ramosum DSM 1402]
gi|373916367|gb|EHQ48115.1| hydrogenase, Fe-only [Coprobacillus sp. 8_2_54BFAA]
Length = 582
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 213/417 (51%), Gaps = 44/417 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-- 113
+C+ C CI L EK+ + ++ +N K V++ +P RASL E FG+ P+
Sbjct: 190 NCMQCGQCINVCPVGALQEKEEVHNVIAALNDDSKHVVVQTAPAVRASLGEEFGM-PIGT 248
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+V K+ LK +G ++DT+ DLT++E EFI R ++ LPM++S
Sbjct: 249 RVTGKMVHALKLMGFDRVYDTNFGADLTIMEEGYEFIHRIS---------NDGVLPMITS 299
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGW+ Y E + +L ++SS KSP +G+ IK + ++ P +IY V++MPC
Sbjct: 300 CSPGWVNYIEHEY-PELLDHLSSCKSPHMMLGSMIKSYYAKENNLDPKDIYVVSIMPCVA 358
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ + +GL+ +VD+VLTT E+ LI++ +NF L++ D
Sbjct: 359 KKGEKEREENL-----------TDGLK--DVDAVLTTRELGKLIKMFGINFRDLKDEDFD 405
Query: 294 K-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
+ M G ++ G+SGG E R L + + +L++ +R + +E +L
Sbjct: 406 QDMFGEYTGAGVIF---GASGGVMEAALRTVTDVLTKEDLT-NLDYHAVRGEEGVKEASL 461
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPK 406
++ G + A+ + + ++ ++K Y F+E+M CP GC+NGGGQ +
Sbjct: 462 KI-GDMTVNVAVAHSMVLAKPLLEEIKNGTSKYHFIEIMGCPGGCVNGGGQSYVNALTRN 520
Query: 407 PGQSPKELIKTLETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
G K+ + +Y E++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 521 SGFDWKQ--ARAKALYDEDLALPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 575
>gi|410729206|ref|ZP_11367287.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410596048|gb|EKQ50735.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 566
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 195/407 (47%), Gaps = 39/407 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
+C+ C C T T ++ K L I N+ + V+ ++P R ++ E FGI Q
Sbjct: 188 NCVNCGQCATVCPTGAIIVKSDLRNVWKAIYNRRQRVVAQVAPAVRIAVGEEFGIKAGQN 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG I+DTS DLT+IE EF+ + N+ +P+ +S
Sbjct: 248 VMGKIAAAMRRLGFDEIYDTSVGADLTVIEETKEFLEKLGCE--------NNKIPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP WI YAE + ++PY+SS KSP + GA IK + ++ E V VMPC K
Sbjct: 300 CPAWIRYAETK-HPELMPYVSSCKSPMEMFGAVIKEYYKERDASEDKETISVAVMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+F+ RD VD V+TT E+ D+I+ + F+ +E D
Sbjct: 359 KSEAAREEFI------RNGVRD-------VDYVITTTELCDMIKEIGIKFDEIEAESSDV 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++GV SGG E V R A+ K ++ +EF R D +V
Sbjct: 406 PFSLYSGAGVIFGV---SGGVTEAVIRSIAENKTPKGLK-EIEFIGARGIDGIKVCEVPV 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---IKPKPGQSP 411
+ +++ + G N + ++ ++ K + F+EVMACP GC+ G GQ + +
Sbjct: 462 AENIIRIGIVSGLSNAEKLIERINSGKEHFDFIEVMACPGGCICGAGQPFCLTEDKNERA 521
Query: 412 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
K L K + ++ +NP++ +LYD L+ G K HVH
Sbjct: 522 KGLYKVDKVAQIKR-----SEENPMITALYDRLLK--GRSKELLHVH 561
>gi|169830372|ref|YP_001716354.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
gi|169637216|gb|ACA58722.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
Length = 523
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 208/412 (50%), Gaps = 27/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C+ C C T + E+ ++ + + G+ V++ +P +R SL E FG+ P V
Sbjct: 113 CINCGQCALVCPTGAISERDDTEKVWQALEDPGRFVVVQTAPATRVSLGEEFGLPPGTWV 172
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG +++DT+ + DLT++E E I R K E LP+L+S
Sbjct: 173 AGKQVAALRRLGFDAVWDTNFTADLTIMEEATELIKRIK------GELPGHPLPLLTSCS 226
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +LP++SS KSPQQ GA K + +K P++I+ V++MPC KK
Sbjct: 227 PGWVKFCE-YFYPNLLPHMSSCKSPQQMFGALAKTYYAEKKNIDPEKIFSVSIMPCTAKK 285
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + YR I +VD+VLTT E+ +++ K ++ L E D +
Sbjct: 286 FEAQRPEM-----NASGLYRGTP-SIRDVDAVLTTRELARMLKQKGIDLAGLPEEDYDPL 339
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEV 353
+ ++G ++GG E R A + G L +R + +E AL+V
Sbjct: 340 MGKCTGGAIIFG---ATGGVMEAAVRTAFFFITGNEPPSDLLNLTPVRGLEGVKEGALDV 396
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L+ A+C+G N + ++ ++ + + FVE MACP GC+ GGGQ P+ P +
Sbjct: 397 PGVGTLRIAVCHGLANGRRVLEAMRDGRAPWHFVEFMACPGGCIGGGGQ--PRTAVPPTD 454
Query: 414 LI--KTLETIYLENVMLADPF--KNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I K + +Y + +NP + +LY E+LE P SE A++ +HTEY
Sbjct: 455 EIRAKRIAALYHADARWERRLSHENPEILTLYQEFLEHPMSELAEELLHTEY 506
>gi|300854656|ref|YP_003779640.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528]
gi|300434771|gb|ADK14538.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528]
Length = 578
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 208/411 (50%), Gaps = 40/411 (9%)
Query: 59 CLACSGCITSAETVMLEKQS----LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
C C C++ T L + S + E L++ +K V++ +P R +L E FG+ P
Sbjct: 194 CTFCGQCVSVCPTAALTQVSNVAKVWEVLTDPDK--YVVVQTAPAIRVTLGEKFGMEPGT 251
Query: 115 VFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K+ + L+ LG + DT + D+T++E +EFI R + + LP+L+S
Sbjct: 252 IVTGKMVSALRRLGFDKVCDTDFAADVTILEEAHEFIDRLQ---------NGGRLPILTS 302
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CP W+ + E Q +L S+ KSP G K ++ +KL P +I V+VMPC
Sbjct: 303 CCPSWVKFIEHQFPD-LLDIPSTCKSPHIMFGTLAKTYMAEKLNIDPSKIVVVSVMPCIA 361
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E +R++ Q E +++ VD V+TT E+ D+I ++F L + D
Sbjct: 362 KKYEISRKEL------QYEGHKN-------VDLVVTTRELADMIMEAGIDFNKLPDEDFD 408
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
L ++G ++GG E R A + + G+ ++ +EF +R D +E ++
Sbjct: 409 NPLGESTGASVIFG---TTGGVIEAALRTAYEWITGETLK-EVEFHGVRGLDGLKEASIN 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++GK + + +G N + ++ +++ + Y +E+MACP GC++GGGQ P +
Sbjct: 465 IDGKEI-NIGVAHGLGNARKLLEEIESGESKYHAIEIMACPGGCIDGGGQ--PYHFGNLD 521
Query: 413 ELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K +E +Y E N L +NP V++LY E++ G +KA +HT Y
Sbjct: 522 IVKKRMEALYREDRNKPLRKSHENPEVQALYKEFIGDVGGKKAHDLLHTHY 572
>gi|255659119|ref|ZP_05404528.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544]
gi|260848564|gb|EEX68571.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544]
Length = 589
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 210/414 (50%), Gaps = 33/414 (7%)
Query: 58 DCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC+ C C + ++EK ++ L + + K VI+ ++P R SL + FG+ P +
Sbjct: 202 DCILCGQCSLVCPTGALVEKDDTEKVLDALQDPKKHVIVQVAPSVRVSLGDAFGMEPGAI 261
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
++ T L LG +FDT+ DLT++E EF+ R + LPM++S
Sbjct: 262 VTGQMVTALHLLGFDKVFDTNFGADLTIMEEGTEFLDRLQH---------GGVLPMMTSC 312
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ Y EK S LP++SS KSP GA K + + G +I V+VMPC K
Sbjct: 313 CPGWVYYVEKHY-SDCLPHLSSTKSPMSIFGAVAKTYYPKVAGIDVKDIVTVSVMPCTAK 371
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR E RD P+VD VLTT E++ LI+ ++F L E+ D
Sbjct: 372 KFEAARP----------ELGRDGR---PDVDIVLTTRELIKLIKYVGLSFGQLPETEFDS 418
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L G ++G ++GG E R L GK +E L+F+ R +E LE+
Sbjct: 419 PLGTASGAGAIFG---TTGGVMEAALRTVCDKLTGKTLE-RLDFQEARGFKGIKECTLEL 474
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G+TL A+ + +N + ++ +V+ Y F+EVMACP GC+ GGGQ K+
Sbjct: 475 GGRTL-HIAIAHTLKNAEILMEQVRKGISPYDFIEVMACPGGCIGGGGQPIGTTNAVKKK 533
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
++ L I ++ + +NP ++ LY ++L +PG KA + +HT Y V K+
Sbjct: 534 RMQALYEID-RSLPVRKSHENPELQVLYRDFLGEPGEGKAHELLHTGYRAVPKA 586
>gi|110803368|ref|YP_699606.1| iron hydrogenase [Clostridium perfringens SM101]
gi|110683869|gb|ABG87239.1| iron hydrogenase [Clostridium perfringens SM101]
Length = 572
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 208/415 (50%), Gaps = 44/415 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ- 114
+CL C C+ + L EK ++ +N K VI++++P R S+ E F + Q
Sbjct: 189 NCLLCGQCVAACPVDALSEKSHIERVQDALNDPEKHVIVAIAPAVRTSMGELFKMGYGQD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ LG +FD + D+T++E E I R K +N PML+S
Sbjct: 249 VTGKLYTALRKLGFDKVFDINFGADMTIMEEATELIERIK---------NNGPFPMLTSC 299
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +++ +Y ++ +S+ KSPQQ G+ K + Q P +++ VTVMPC
Sbjct: 300 CPSWV----REVENYFPELVENLSTAKSPQQIFGSASKTYYPQVADIDPKKVFTVTVMPC 355
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KK EA R + +EG I +D+V+TT E+ +I+ ++F LE+S
Sbjct: 356 TSKKFEADRPEM-----------ENEG--IRNIDAVITTRELARMIKAAKIDFAKLEDSE 402
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
+D + G ++ G++GG E R A + ++ +++++ +R + +E
Sbjct: 403 VDPAMGEYTGAGVIF---GATGGVMEAALRTAKDFMENDNLD-NVDYEAVRGLAGIKEAE 458
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G K A+ G N+ +V+ K+ DY F+EVMACP GC+NGGGQ S
Sbjct: 459 VEIAGNE-YKLAVVNGAANVFELVKSGKIN--DYHFIEVMACPGGCVNGGGQPHISAEDS 515
Query: 411 PKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K I+ + L +N+ +N + +Y+ ++ +PG +A + +H +Y
Sbjct: 516 DKIDIREVRASVLYNQDKNLEKRKSHQNSALLKMYENYMGKPGHGRAHELLHMKY 570
>gi|220929711|ref|YP_002506620.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
gi|220000039|gb|ACL76640.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
Length = 562
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 203/414 (49%), Gaps = 46/414 (11%)
Query: 40 QVSTSSKQQAEPVKISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLS 97
QV+T+ + + V DC+ C C + ++ K+ +D + +K K VI ++
Sbjct: 174 QVTTAFNKSLQEV-----DCVNCGQCRVVCPTGALMIKKDIDRAYKALHDKNKRVIAQIA 228
Query: 98 PQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
P R ++ E FG+ P ++ K+ + L+ LG +FDT+ DLT+IE E + R ++
Sbjct: 229 PAVRVAIGEDFGLQPGEISMGKIVSALRKLGFDQVFDTAVGADLTVIEEAEELMDRIQRK 288
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
++ LP+ SS CP W YAE Q ++ +SS SPQQ GA IK ++
Sbjct: 289 EK---------LPLFSSCCPAWFKYAE-QKHPDLMENVSSCLSPQQMFGAVIKEQYKREK 338
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
E + +MPC KK EAAR + + Q VD V+TT E+ +
Sbjct: 339 ASDEKENVVIAIMPCTAKKYEAARPENTINGERQ-------------VDMVITTQELAIM 385
Query: 277 IQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL 336
IQ + F LE+ +D G ++GV SGG +E V R+ K + G L
Sbjct: 386 IQENGIVFNELEDEAIDMPFGFTSGAGVIFGV---SGGVSEAVLRYYYKERNASTLRG-L 441
Query: 337 EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
+ +R + +E + E++G+T+ + + +G +N + ++R++K + + F+EVMACP G
Sbjct: 442 SYCGVRGMEGVKEASAEIDGRTV-RIGIVHGLKNAEKLIRRIKSGEEKFDFIEVMACPGG 500
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWL 445
C+ G GQ P+ E ++ L + V + P K NP + +LY+ L
Sbjct: 501 CIGGAGQPIPQ-----NENVRKLRAKGIYKVDKSLPIKRSDDNPTIDALYNGIL 549
>gi|85858940|ref|YP_461142.1| iron only hydrogenase large subunit [Syntrophus aciditrophicus SB]
gi|85722031|gb|ABC76974.1| iron only hydrogenase large subunit [Syntrophus aciditrophicus SB]
Length = 605
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 205/414 (49%), Gaps = 43/414 (10%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
+C+ C C+ + + EK +DE + + + V++ +P RA+L E FG+ P
Sbjct: 197 NCVNCGQCVMACPVGALYEKDQVDEVWKALQDPTRHVVVQEAPAIRAALGEEFGMPPGSL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT+ + DLT+IE NE + R K+ +LPM++S
Sbjct: 257 VTGKMIAALRRLGFDKVFDTNFTADLTIIEEGNELLKRVKE---------GGTLPMITSC 307
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E +L ++S+ KSPQQ GA K + Q G P I+ V++MPC K
Sbjct: 308 SPGWIKFCE-HFYPDLLGHLSTCKSPQQMFGALAKTYYAQVSGIDPANIFSVSIMPCTAK 366
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + + Y+D VD VLTT E+ +I+ ++F L + D
Sbjct: 367 KYEAQRPEM------KSSGYQD-------VDVVLTTRELARMIKEAGIDFVNLPDEKYD- 412
Query: 295 MLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
D G G A G++GG E R + G+ + L +R + A
Sbjct: 413 -----DPMGEYTGAATIFGATGGVMEAALRTVYAVVTGEELS-DLNIMPVRGLEGVKAAA 466
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+ V +K A+ +G N + ++ +++ K +Y F+EVM CP GC+ GGG+ P P
Sbjct: 467 VPVGALGDVKVAVAHGLGNARKLLDEIRAGKSEYAFIEVMCCPGGCVAGGGE--PIPTTD 524
Query: 411 PKELIKTLETIYLENVMLA---DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+++ +Y ++ + ++P V+++Y+++L++P K+ + +HT Y
Sbjct: 525 EIRMLRA-GALYRDDGEVQQYRQSHQSPPVKAVYEKFLKEPLGHKSHELLHTHY 577
>gi|167768515|ref|ZP_02440568.1| hypothetical protein CLOSS21_03074 [Clostridium sp. SS2/1]
gi|167710039|gb|EDS20618.1| hydrogenase, Fe-only [Clostridium sp. SS2/1]
gi|291560482|emb|CBL39282.1| hydrogenases, Fe-only [butyrate-producing bacterium SSC/2]
Length = 570
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 211/423 (49%), Gaps = 42/423 (9%)
Query: 49 AEPVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
+E I DC C CIT T L E+ D+ + +K V+ ++P RA+ E
Sbjct: 178 SENRDIKTADCALCGQCITHCPTGALRERDDTDKLYRALEDKDTIVVAQIAPAVRAAWGE 237
Query: 107 HFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
G+S + +K+ L+ +GV +FDT+ S DLT++E EF+ R+ +N
Sbjct: 238 SLGLSREEATVEKIVDALRRIGVDYVFDTTFSADLTIMEEGTEFVERF----------TN 287
Query: 166 SSL---PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
L PM +S CPGW+ + + Q ++ +SS KSPQ+ GA +K +K+ PD
Sbjct: 288 GDLDMYPMFTSCCPGWVRFIKSQY-PQMVNRLSSAKSPQEMFGAVMKTAFAKKMNIDPDR 346
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
I+ +++MPC KK E RE +F + + G VD VLTT E+ LI+ +
Sbjct: 347 IFALSIMPCVAKKDE--REKPLFHGE-----FAGHG-----VDCVLTTRELDRLIRADHI 394
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKT 340
+ + L+++ D T G ++G ++GG E R A + GK ++ + +
Sbjct: 395 DPKTLKDAAFDTPFTEGTGAGVIFG---ATGGVMEAALRSAYYLITGKNPEVDAFKQIRG 451
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+ + + E E+ G T+ A+ G QN +N++ ++ R+ Y FVEVMACP GC+ GG
Sbjct: 452 VNKNGWTEAQFEIAGNTI-NIAVVSGLQNTRNLMEAIQKREVHYHFVEVMACPGGCVGGG 510
Query: 401 GQIKPKPGQSPKELIKTL-ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GQ P KEL +Y + L +NP ++ LYDE+ PGS KA + +
Sbjct: 511 GQ----PIHEGKELASDRGSNLYFLDKTAHLRFSHENPDIKHLYDEYFGSPGSHKAHQLL 566
Query: 458 HTE 460
H +
Sbjct: 567 HVQ 569
>gi|187932399|ref|YP_001886496.1| iron hydrogenase 1 [Clostridium botulinum B str. Eklund 17B]
gi|187720552|gb|ACD21773.1| iron hydrogenase 1 [Clostridium botulinum B str. Eklund 17B]
Length = 565
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 199/411 (48%), Gaps = 39/411 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
DC+ C C T ++ K + I N + V+ ++P R +L E FGI P +
Sbjct: 188 DCVNCGQCANVCPTGAIVVKSDVKPVWKAIYNPKQRVVAQVAPAVRVALGEEFGIKPGEN 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG I+DTS + D+T+IE NEF+ Q ES D++ LP+ +S
Sbjct: 248 VMDKIVAAMRKLGFDEIYDTSLTADMTIIEESNEFL----QKLESGDDK----LPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ Y E + ++ Y+S+ KSP Q G+ IK + + E V +MPC K
Sbjct: 300 CPAWVRYVETK-HPELMKYVSTCKSPMQMFGSVIKEYFKENDSLEEKETISVAIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+F+ I ++D V+TT E+ +I + F+ +E D
Sbjct: 359 KAEAAREEFITN-------------GIKDIDYVITTTELCKMINEAGLQFDKIEPESSDM 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++GV +GG E V R + K ++ +EF +R D ++
Sbjct: 406 PFSLYSGAGVIFGV---TGGVTEAVIRGVVEDKSSKALK-EIEFIGVRGMDGVKICEVPF 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---IKPKPGQSP 411
G+ L+ + G N +N++ K++ + + FVEVMACP GC+ G GQ +K +
Sbjct: 462 GEKNLRIGVVSGLANAENLIDKIQSGEEHFDFVEVMACPGGCVAGAGQPFSLKEGNKERA 521
Query: 412 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K L K + ++ +NP++ SLY+ L++ E HVH E+
Sbjct: 522 KGLYKVDKVTQIKRSQ-----ENPVLISLYNGLLKERSKELL--HVHYEHE 565
>gi|336169759|gb|AEI25542.1| FeFe-hydrogenase [Clostridium sp. 3-9]
Length = 572
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 199/414 (48%), Gaps = 40/414 (9%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ + L+++S E + + K V+++++P R ++ E F +
Sbjct: 187 NCLLCGQCVIACPVAALKEKSHTEKVKAALADPKKHVVVAMAPAVRTAMGELFNMGFGKD 246
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L++LG IFD + D+T++E E + R K +N PM +S
Sbjct: 247 VTGKLYTALRTLGFDKIFDINFGADMTIMEEATELLQRVK---------NNGPFPMFTSC 297
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ A+ +L +SS KSPQQ G K + G P+++Y VT+MPC DK
Sbjct: 298 CPAWVRLAQNYYPD-LLKNLSSAKSPQQIFGTATKTYYPSITGINPEDVYTVTIMPCNDK 356
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA L++ E GL ++D+VLTT E+ +I+ + F LE+S D
Sbjct: 357 KYEA-------DLEAMEVN----GLR--QIDAVLTTRELAKMIKDAKIKFAELEDSEHDP 403
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++ G++GG E R A +E ++E+ +R + +E +E+
Sbjct: 404 AMGEYSGAGVIF---GATGGVMEAALRTAKDFAENAELE-NVEYTQVRGLEGIKEATVEI 459
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G A+ G N ++ KM + Y F+EVMACP GC+NGGGQ P +
Sbjct: 460 AGNN-YNVAVINGAANFFEFMKSGKMDEKQYHFIEVMACPGGCVNGGGQ--PHVNAETRS 516
Query: 414 LI--KTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +TL L +N+ KNP + +Y+ + +PG A K +H Y
Sbjct: 517 AVDYRTLRASVLYNQDKNLPKRKSHKNPAIVKMYESYFGKPGEGLAHKLLHHVY 570
>gi|302392631|ref|YP_003828451.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
gi|302204708|gb|ADL13386.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
Length = 601
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 202/415 (48%), Gaps = 41/415 (9%)
Query: 59 CLACSGCITSAETVML----EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
C+ C CI T L +KQ + + L++ K V+I +P R ++ E FG+
Sbjct: 189 CITCGQCIMVCPTGALHGQDDKQKVWDALAD--DTKHVVIQTAPAIRVTIGEMFGMEVGS 246
Query: 115 -VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V KL + LK +G +FD D+ ++E E + R + S LP +S
Sbjct: 247 LVTGKLVSALKRVGFDRVFDDCFGADVVVMEEGRELMERLE---------SGKDLPQFTS 297
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGW+ + E S +L +SS KSPQQ GA K + +K G PD I+ V+ MPC
Sbjct: 298 CCPGWVKFCESFYPS-LLDNLSSCKSPQQVFGALAKTYYAEKAGIDPDNIFSVSTMPCVA 356
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA R + D G + +VD+VLTT E+ ++I+ ++ E L E D
Sbjct: 357 KKYEAQRPEM-----------DDSGRQ--DVDAVLTTRELGEMIKQIGIDIENLPEQEYD 403
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
+ + G ++ GS+GG E R + L G+ +E E + +R+ DF E +++
Sbjct: 404 EPMGYATGAGVIF---GSTGGVMEATLRTVYEKLTGERLE-DFELQKVRSQDFNEAEVKL 459
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+ + A+ G N + ++ +V + DY FVEVMACP+G GGG G+
Sbjct: 460 DEDRSINVAVARGTGNARKLIHRVLSGEADYDFVEVMACPAGGCVGGGGQPIYSGRDRWA 519
Query: 414 LIKTLETIYLENVMLADPFK-------NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + ++ +D K NP V+ LYD +LE+P EK++K +HT Y
Sbjct: 520 RMVEDRVARADGLLKSDGRKDIKVAHENPFVKELYDSFLEKPHGEKSQKLLHTSY 574
>gi|429762837|ref|ZP_19295210.1| putative ferredoxin hydrogenase [Anaerostipes hadrus DSM 3319]
gi|429180698|gb|EKY21907.1| putative ferredoxin hydrogenase [Anaerostipes hadrus DSM 3319]
Length = 570
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 211/423 (49%), Gaps = 42/423 (9%)
Query: 49 AEPVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
+E I DC C CIT T L E+ D+ + +K V+ ++P RA+ E
Sbjct: 178 SENRDIKTADCALCGQCITHCPTGALRERDDTDKLYRALEDKDTIVVAQIAPAVRAAWGE 237
Query: 107 HFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
G+S + +K+ L+ +GV +FDT+ S DLT++E EF+ R+ +N
Sbjct: 238 SLGLSREEATVEKIVDALRRIGVDYVFDTTFSADLTIMEEGTEFVERF----------TN 287
Query: 166 SSL---PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
L PM +S CPGW+ + + Q ++ +SS KSPQ+ GA +K +K+ PD
Sbjct: 288 GDLDMYPMFTSCCPGWVRFIKSQY-PQMVNRLSSAKSPQEMFGAVMKTAFAKKMNIDPDR 346
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
I+ +++MPC KK E RE +F + + G VD VLTT E+ LI+ +
Sbjct: 347 IFALSIMPCVAKKDE--REKPLFHGE-----FAGHG-----VDCVLTTRELDRLIRADHI 394
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKT 340
+ + L+++ D T G ++G ++GG E R A + GK ++ + +
Sbjct: 395 DPKTLKDAAFDTPFTEGTGAGVIFG---ATGGVMEAALRSAYYLITGKNPEVDAFKQIRG 451
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+ + + E E+ G T+ A+ G QN +N++ ++ R+ Y FVEVMACP GC+ GG
Sbjct: 452 VNKNGWTEAKFEIAGNTI-DIAVVSGLQNTRNLMEAIQKREVHYHFVEVMACPGGCVGGG 510
Query: 401 GQIKPKPGQSPKELIKTL-ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GQ P KEL +Y + L +NP ++ LYDE+ PGS KA + +
Sbjct: 511 GQ----PIHEGKELASDRGSNLYFLDKTAHLRFSHENPDIKHLYDEYFGSPGSHKAHQLL 566
Query: 458 HTE 460
H +
Sbjct: 567 HVQ 569
>gi|317498714|ref|ZP_07957005.1| iron only hydrogenase large subunit domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|316894008|gb|EFV16199.1| iron only hydrogenase large subunit domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 570
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/423 (31%), Positives = 211/423 (49%), Gaps = 42/423 (9%)
Query: 49 AEPVKISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
+E I DC C CIT T L E+ D+ + +K V+ ++P RA+ E
Sbjct: 178 SENRDIKTADCALCGQCITHCPTGALRERDDTDKLYRALEDKDTIVVAQIAPAVRAAWGE 237
Query: 107 HFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
G+S + +K+ L+ +GV +FDT+ S DLT++E EF+ R+ +N
Sbjct: 238 SLGLSREEATVEKIVDALRRIGVDYVFDTTFSADLTIMEEGTEFVERF----------TN 287
Query: 166 SSL---PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
L PM +S CPGW+ + + Q ++ +SS KSPQ+ GA +K +K+ PD
Sbjct: 288 GDLDMYPMFTSCCPGWVRFIKSQY-PQMVNRLSSAKSPQEMFGAVMKTAFAKKMNIDPDR 346
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
I+ +++MPC KK E RE +F + + G VD VLTT E+ LI+ +
Sbjct: 347 IFALSIMPCVAKKDE--REKTLFHGE-----FAGHG-----VDCVLTTRELDRLIRADHI 394
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKT 340
+ + L+++ D T G ++G ++GG E R A + GK ++ + +
Sbjct: 395 DPKTLKDAAFDTPFTEGTGAGVIFG---ATGGVMEAALRSAYYLITGKNPEVDAFKQIRG 451
Query: 341 IRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
+ + + E E+ G T+ A+ G QN +N++ ++ R+ Y FVEVMACP GC+ GG
Sbjct: 452 VNKNGWTEAQFEIAGNTI-DIAVVSGLQNTRNLMEAIQKREVHYHFVEVMACPGGCVGGG 510
Query: 401 GQIKPKPGQSPKELIKTL-ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GQ P KEL +Y + L +NP ++ LYDE+ PGS KA + +
Sbjct: 511 GQ----PIYEGKELASDRGSNLYFLDKTAHLRFSHENPDIKHLYDEYFGSPGSHKAHQLL 566
Query: 458 HTE 460
H +
Sbjct: 567 HVQ 569
>gi|251779532|ref|ZP_04822452.1| hydrogenase, Fe only [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083847|gb|EES49737.1| hydrogenase, Fe only [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 565
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 200/411 (48%), Gaps = 39/411 (9%)
Query: 58 DCLACSGCITSAET--VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ- 114
DC+ C C T ++++ + + N + V+ ++P R +L E FG+ P +
Sbjct: 188 DCVNCGQCANVCPTGAIVVKNDVKPVWKALYNPKQRVVAQVAPAVRVALGEEFGVKPGEN 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG I+DTS + D+T+IE NEF+ Q ES D++ LP+ +S
Sbjct: 248 VMDKIVAAMRKLGFDEIYDTSLTADMTIIEESNEFL----QKLESGDDK----LPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ Y E + ++ Y+S+ KSP Q G+ IK + + E V +MPC K
Sbjct: 300 CPAWVRYVETK-HPELMKYVSTCKSPMQMFGSVIKEYFKENDSLEEKETISVAIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+F+ I ++D V+TT E+ +I + F+ +E D
Sbjct: 359 KAEAAREEFIRN-------------GIKDIDYVITTTELCKMINEAGLQFDKIEPESSDM 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++GV +GG E V R + K ++ +EF IR D ++
Sbjct: 406 PFSLYSGAGVIFGV---TGGVTEAVIRGVVEDKSSKALK-EIEFIGIRGMDGVKICEVPF 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---IKPKPGQSP 411
G+ L+ + G N +N++ K++ + + FVEVMACP GC+ G GQ +K +
Sbjct: 462 GEKNLRIGVVSGLANAENLIDKIQSGEEHFDFVEVMACPGGCIAGAGQPFSLKEGNKERA 521
Query: 412 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K L K + ++ +NP++ SLY+ L++ E HVH E+
Sbjct: 522 KGLYKVDKVTQIKRSQ-----ENPVLISLYNGLLKERSKELL--HVHYEHE 565
>gi|147678345|ref|YP_001212560.1| hydrogenase subunit [Pelotomaculum thermopropionicum SI]
gi|146274442|dbj|BAF60191.1| hypothetical hydrogenase subunit [Pelotomaculum thermopropionicum
SI]
Length = 574
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/417 (29%), Positives = 208/417 (49%), Gaps = 37/417 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
K++ +C+ C C T + EK +D+ + + + K V++ +P +R L E G+
Sbjct: 183 KLANMECVQCGQCSLVCPTAAIQEKDDIDKVWAALADPKKHVVVQTAPATRVQLGETMGM 242
Query: 111 SPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
P + K+ L+ LG +FDT + DLT++E NE + R K + LP
Sbjct: 243 EPGSIVTGKMVAGLRRLGFNKVFDTDFTADLTILEEGNELLQRIK---------TGGVLP 293
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M++S PGWI +AE +LP++S+ KSPQQ GA K + QK G P +I+ V++M
Sbjct: 294 MITSCSPGWIKFAE-HFYPDLLPHLSTCKSPQQMFGALAKTYYAQKEGIDPADIFVVSIM 352
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E R + +D G + +VD VLT+ E+ + + +N L E
Sbjct: 353 PCTAKKFECQRPEM-----------KDSGYQ--DVDVVLTSRELGRMFKQANINIAELPE 399
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFRE 348
D L G ++ G++GG E R + + GK ++ ++ F R + +E
Sbjct: 400 EEYDAPLGISTGAGEIF---GATGGVMEAALRTVYEVVTGKELD-NINFVECRGLTGVKE 455
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
++V G +K A+ G N + ++ KV+ + DY F+E+M GG P P
Sbjct: 456 ATIQV-GDLPVKIAITNGLGNARKVLDKVRAGEADYHFIEIMC--CPGGCIGGGGSPIPT 512
Query: 409 QSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L K ++ Y E+ ++L +NP V++LY+E+LE+P K+ + +HT Y P
Sbjct: 513 NTEIRL-KRIDATYTEDERMVLRKSHENPAVKALYEEFLEKPLGHKSHELLHTHYTP 568
>gi|421078124|ref|ZP_15539083.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
gi|392523709|gb|EIW46876.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
Length = 460
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 194/383 (50%), Gaps = 35/383 (9%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+K + ++ +P R SLAE FG+ PL V K+ LK LG ++DT+ + DLT++E
Sbjct: 105 DKKQFSMVQCAPAVRVSLAEEFGM-PLGSLVPGKMVAALKRLGFTRVYDTNFAADLTIME 163
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+E + R + SLPM +S CP W+ + E + ++ ++SS KSPQQ
Sbjct: 164 EGSELVKRITE---------GGSLPMFTSCCPAWVKFVENEYPE-LIDHLSSCKSPQQMA 213
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 264
G+ K + G E+Y V +MPC KK EA+R + + Y+D V
Sbjct: 214 GSMFKTYGASVDGVDAREVYSVAIMPCTCKKFEASRPEM------KSSGYQD-------V 260
Query: 265 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 324
D+VLTT E+ LI+ A++F AL E DK L G ++GV +GG E R A
Sbjct: 261 DAVLTTRELAYLIKEAAIDFNALPEESFDKPLGMYSGAGTIFGV---TGGVMEAAIRTAY 317
Query: 325 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 383
+ + + IE ++ ++R R+V L+ G LK + G +N+ I+ ++ K D
Sbjct: 318 ELITKEPIE-NVNVTSVRGEQGVRKVTLDT-GTLKLKTVVVSGLKNVIPILEDIQRGKAD 375
Query: 384 YQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSL 440
+ F+EVM CP+GC++GGGQ K P G+ K + E +NP ++ +
Sbjct: 376 FHFMEVMTCPAGCISGGGQPKMLLPVDGRIAYVNRKFSTYQHDEEQRYRKSHENPEIQDI 435
Query: 441 YDEWLEQPGSEKAKKHVHTEYHP 463
Y ++L +P + K +HT Y P
Sbjct: 436 YKKFLGEPLGHTSHKLLHTHYKP 458
>gi|241949543|ref|XP_002417494.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|259511267|sp|B9W8S4.1|NAR1_CANDC RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|223640832|emb|CAX45147.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 584
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 53/308 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV-----------------------VSLKKATFKNP----- 36
S L DL+DFI+P C+ V ++ + NP
Sbjct: 1 MSALLSADDLNDFISPGVACIKPPASTNTNTNTTTTDSYNENGEVEIQIDSQGNPLEISK 60
Query: 37 -DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---NKGKAV 92
D Q+ T+ Q P +ISL DCLACSGCITSAE V++ + S E + + K K
Sbjct: 61 IDGKQIQTN---QLTPAQISLADCLACSGCITSAEEVLVAQHSHQELIKALQSPTKNKVF 117
Query: 93 IISLSPQSRASLAEHFGISPLQVFKKL--TTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
++S+S QSRASLA + ++ +++ KL F+K +G I TS R L+LI E I
Sbjct: 118 VVSISHQSRASLAMAYNVT-IEIMDKLLINLFIKQMGFTYIIGTSLGRKLSLINEAKEVI 176
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R +++E P+LSS CPGW+ YAEK YI+P +S++KSPQQ G +K+
Sbjct: 177 NR--KTEEG---------PILSSICPGWVLYAEKT-HPYIIPKLSTIKSPQQITGCLLKN 224
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
C+ L EIYH+++MPC+DKKLE+AR + D++ E + + +P+VD V+T
Sbjct: 225 LTCEALQIDKSEIYHLSIMPCFDKKLESARPEI---YDNENEEDKSISISVPDVDCVITA 281
Query: 271 GEVLDLIQ 278
E++ L++
Sbjct: 282 KELITLLE 289
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 44/106 (41%)
Query: 342 RNSDFREVALEVEGK-TLLKFALCYGFQNLQNIVRKVK---------------------- 378
RNSD E+ L + K TL A+ GF+N+QN+VRK+K
Sbjct: 375 RNSDIYEMRLIYDSKETLASAAVVNGFRNIQNLVRKLKPNTNKSMNNKINPLVARRRARM 434
Query: 379 -------------------MRKCDYQFVEVMACPSGCLNGGGQIKP 405
K DY VE+MACP+GC+NGGGQI P
Sbjct: 435 INRGKSESISQEIEIEIADASKVDY--VEIMACPNGCINGGGQINP 478
>gi|375308958|ref|ZP_09774239.1| Periplasmic hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus sp. Aloe-11]
gi|375078267|gb|EHS56494.1| Periplasmic hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus sp. Aloe-11]
Length = 490
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 192/391 (49%), Gaps = 34/391 (8%)
Query: 78 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 134
SL++ + K G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 104 SLNKVTDMMKKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 162
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 163 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 212
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSP Q +GA +K + Q +P IY V +MPC K+ E R + + + Y
Sbjct: 213 SSCKSPMQMLGALVKTYGAQLDEVKPANIYSVAIMPCTCKQFECDRPEM------EADGY 266
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 267 RD-------VDEVLTTRELAYWIKQRGIDFMNLPDEEFDSPLGKYSGAGTIFGV---TGG 316
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 374
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 317 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 375
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 431
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 376 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKMEAYRARKSSIYGHDAASQVRKS 435
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+NP + LYDE+L +P + +HT +H
Sbjct: 436 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFH 466
>gi|346315724|ref|ZP_08857236.1| hypothetical protein HMPREF9022_02893 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345904086|gb|EGX73835.1| hypothetical protein HMPREF9022_02893 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 577
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 210/415 (50%), Gaps = 37/415 (8%)
Query: 54 ISLKDCLACSGCITS--AETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
I +C C CIT + + + S F + + K I+ ++P RA+ E G+
Sbjct: 183 IEEAECSLCGQCITHCPVNALHVREDSERAFAAFNDPDKITIVQIAPAVRAAWGESLGLR 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ +KL + +G +FDT + DLT++E +EF+ R ++E + +PM
Sbjct: 243 REEATIEKLGDAFRRMGADYVFDTDFAADLTIMEEASEFLERLHHNKEQE-------MPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q ++ ++S+ KSP Q GA K +KLG P IY+++VMP
Sbjct: 296 FTSCCPGWVRFLKSQYPD-MVSHLSTSKSPHQMFGAVTKTWFAEKLGVDPSSIYNISVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E D DS YRD VD VLT EV+ +I + ++ L++
Sbjct: 355 CVAKKHEI---DIPVMNDS---GYRD-------VDVVLTIREVVRMIHAEHIDVGYLQDH 401
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
PLD L G ++ G++GG E R A + G+ + F +R D ++E
Sbjct: 402 PLDDPLGTASGAGVIF---GATGGVMEAALRSAYYFVTGENADAD-AFANVRGMDGWKES 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
E++G ++ A+ G N + ++ ++ ++ Y F+EVMACP GC GGGQ P
Sbjct: 458 TFEIQG-IPVRCAIVSGLGNTRRLIEAMRRKEVAYDFIEVMACPGGCSGGGGQ----PIH 512
Query: 410 SPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+EL + +T+Y N L +NP + +LYDE+L +P SE A+K +HT++
Sbjct: 513 DGEELAAERADTLYHLDRNAKLRYSHENPSIHALYDEYLGKPLSELAEKLLHTDH 567
>gi|307719055|ref|YP_003874587.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM
6192]
gi|306532780|gb|ADN02314.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM
6192]
Length = 583
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 214/423 (50%), Gaps = 42/423 (9%)
Query: 54 ISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFG 109
I+L D C+ C C + EK I + ++ ++P R ++ E FG
Sbjct: 184 IALNDSPCIKCGQCSAHCPVGAIYEKDDTRRVWEAIMDPEIHTVVQIAPAVRVAIGEAFG 243
Query: 110 ISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P + K L+ LG +IFDT+ DLT++E +EF+ R+ + +
Sbjct: 244 YEPGTLLTGKTYAALRRLGFDAIFDTNFGADLTIMEEASEFVERFAHGK--------GPI 295
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P++++ CP W+ Y EK ++P+ SS KSPQ + A +K + QK G P +I+ V+V
Sbjct: 296 PLITTCCPSWVDYLEKYYPE-MIPHFSSAKSPQMMLAAMVKTYYAQKKGIDPSKIFMVSV 354
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK E R++ ++ Y+D+ D+ +TT E+ +I+ ++F L
Sbjct: 355 MPCTSKKYEIERDENMYS-----SGYKDQ-------DASITTRELARMIKSAGIDFHNLP 402
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++GV +GG E R A + GK +E +E+ IR D +
Sbjct: 403 DEEADQPLGMYTGAGTIFGV---TGGVMEAAVRTAYYFVTGKEME-KVEYTPIRGLDGVK 458
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKM-----RKCDYQFVEVMACPSGCLNGGGQ 402
E L+++G T ++ A+ + N+Q ++ +VK ++ Y F+EVMAC GC+ GGGQ
Sbjct: 459 EATLDIDG-TQVRIAVAHSISNVQYVLDRVKQALKEGKEPPYHFIEVMACRGGCVGGGGQ 517
Query: 403 IKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
G + + K IY E + +NP ++ LY+E+LE+P SEKA K++HT
Sbjct: 518 PY---GATDEIRAKRAAGIYTDDERSVYRCSHQNPAIKQLYEEFLEKPLSEKAHKYLHTH 574
Query: 461 YHP 463
Y P
Sbjct: 575 YTP 577
>gi|449107435|ref|ZP_21744089.1| hydrogenase, Fe-only [Treponema denticola ASLM]
gi|451969127|ref|ZP_21922356.1| hydrogenase, Fe-only [Treponema denticola US-Trep]
gi|448961635|gb|EMB42330.1| hydrogenase, Fe-only [Treponema denticola ASLM]
gi|451701995|gb|EMD56429.1| hydrogenase, Fe-only [Treponema denticola US-Trep]
Length = 596
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 210/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + N K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E + E F + ++D VLTT E + +I+ + E L+E+
Sbjct: 355 CVAKKGEISMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPETLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|114567439|ref|YP_754593.1| ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 387
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 178/358 (49%), Gaps = 27/358 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
IS K C+ C C+ + +++ S E L + K V++ +P R +L E FG +
Sbjct: 41 ISPKKCINCGQCLINCPFNAIDEFSRVEELKKALADSQKFVVVQEAPAVRVALGEEFGQA 100
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ L+ LG ++DT + DLT++E E I R LP
Sbjct: 101 PGTNVKNKMYAALRKLGFDKVYDTEFTADLTIMEEGTELIHRVYGFLGVPGFEEVGPLPQ 160
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CP WI YAE +LP+ISS KSPQQ GA K ++ +KL P ++ V+VMP
Sbjct: 161 FTSCCPAWIKYAEDNY-PLVLPHISSAKSPQQMWGAVAKTYLAEKLNVDPANMFSVSVMP 219
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R +F+ ++D VD V+TT E+ +I+ ++F L +
Sbjct: 220 CTAKKYECERPEFI------ASGHQD-------VDLVITTRELAQMIKDAGIDFMGLPDE 266
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ + ++ G++GG E R A + L G+ + G +EF +R D RE
Sbjct: 267 EADRFVGLSTGAATIF---GATGGVMEAALRTAYEILSGESL-GKVEFDAVRGLDPVREA 322
Query: 350 ALEVEGKTL---LKFALCY--GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
+EV K L L ++C G +++ N++ V + Y F+EVM CP GC+NGGGQ
Sbjct: 323 TVEVPVKALGTSLPVSVCVVTGTKHVANVIEDVLAGRSKYHFIEVMNCPGGCINGGGQ 380
>gi|310658148|ref|YP_003935869.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[[Clostridium] sticklandii]
gi|308824926|emb|CBH20964.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[[Clostridium] sticklandii]
Length = 456
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 196/383 (51%), Gaps = 37/383 (9%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEA 145
+K + ++ +P R ++AE FG+ + K+ L+ LG ++DT+ S DLT++E
Sbjct: 99 DKNQFSVVQCAPAVRVAIAEDFGMDLGSLTPGKMAAALRKLGFDRVYDTNFSADLTIMEE 158
Query: 146 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 205
E I R + N LPM +S CP W+ Y E+ Y L ++S+ KSPQQ G
Sbjct: 159 GTELIERVTK---------NEKLPMFTSCCPAWVKYMEQSHPEY-LDHLSTCKSPQQMAG 208
Query: 206 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 265
A K + + +I V++MPC K E+ R +++S E RD VD
Sbjct: 209 AIFKTYGAKLDNKSAKDIASVSIMPCTCKSFESERT----EMNSSGE--RD-------VD 255
Query: 266 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 325
VLTT E+ LI+ ++F L+E D+ L N G+++GV +GG E R +
Sbjct: 256 VVLTTRELAYLIKEMDIDFVNLQEENFDQPLGNYTGAGNIFGV---TGGVMEAAIRTGYE 312
Query: 326 TLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
+ + I+ +++ +R N +F E ++V G LK A+ G +N++ I+ +K K DY
Sbjct: 313 LITNQPID-NVDVVAVRGNKNFSESIIKV-GDLELKVAVVAGLKNVEPIIEAMKNGKADY 370
Query: 385 QFVEVMACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYLEN--VMLADPFKNPLVRS 439
FVEVM CP GC++GGGQ PK P P + Y + L +NP ++
Sbjct: 371 HFVEVMTCPEGCISGGGQ--PKVLLPKHKPMAYENRISGTYQHDSESKLRKSHENPAIKK 428
Query: 440 LYDEWLEQPGSEKAKKHVHTEYH 462
LY ++L+ P K+ + +HT+Y+
Sbjct: 429 LYKDFLKNPLGHKSHELLHTKYY 451
>gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
Termite group 1 bacterium phylotype Rs-D17]
gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
Termite group 1 bacterium phylotype Rs-D17]
Length = 667
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 41/412 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISP---L 113
C+ C C T + +S ++ + + K V+++++P RAS+ E FG +
Sbjct: 189 CVYCGQCARVCPTGAIMPKSEISYVWKVLSDPKKKVVVAIAPAVRASIGEVFGFAGGNGT 248
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K+ T L+S+G +FD S + D+T++E +EF+ R K+ N +P+ +S
Sbjct: 249 ETAGKIVTALRSMGFAKVFDVSFAADMTIVEEADEFLNRLKK---------NKDMPLFTS 299
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CP W+ + E+ +I +SS +SPQ G+ K + + L +++ V++MPC
Sbjct: 300 CCPAWVKFVEQYYPDFI-SNLSSCRSPQAMYGSVAKKIMPEMLKISKEDLTVVSIMPCTA 358
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA R + + ++D VLTT E+ +I+ + F LE S D
Sbjct: 359 KKFEARRPELSKN-------------GVADIDYVLTTQELARMIEEAGLLFGELEPSAFD 405
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALE 352
L G ++G +SGG E V R G + +F +R D REV +
Sbjct: 406 MPLGFKTGGGVIFG---NSGGVTEAVLRDIVSNNSGGAGKTE-QFVFVRGEDGLREVKVN 461
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G+ L A+ YG +N + I++ +K+ + Y FVEVMACP GC+ G GQ P
Sbjct: 462 FGGREL-NIAVVYGLKNARKILKDIKVDRSRYDFVEVMACPGGCIGGAGQ----PVYKDL 516
Query: 413 ELIKTLETIYLEN---VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ KT + E+ + L P NP V+ +Y ++ +PGS A +++HT +
Sbjct: 517 SVRKTRTKVLYESDKTMELRRPQDNPYVQKVYKDYFNKPGSCAAHEYLHTGH 568
>gi|449109329|ref|ZP_21745965.1| hydrogenase, Fe-only [Treponema denticola ATCC 33520]
gi|448959137|gb|EMB39859.1| hydrogenase, Fe-only [Treponema denticola ATCC 33520]
Length = 596
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 210/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + N K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E + E F + ++D VLTT E + +I+ + E L+E+
Sbjct: 355 CVAKKGEISMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPETLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|310826467|ref|YP_003958824.1| hydrogenase [Eubacterium limosum KIST612]
gi|308738201|gb|ADO35861.1| hydrogenase [Eubacterium limosum KIST612]
Length = 583
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 208/430 (48%), Gaps = 47/430 (10%)
Query: 48 QAEPV---KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRA 102
Q +PV I+ C+ C CI + L EK ++ + + K V++ +P RA
Sbjct: 179 QVQPVFNKSIAEVGCINCGQCIVNCPVGALKEKSDINRVWDALGDPTKTVVVQSAPAVRA 238
Query: 103 SLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
+L E F + P+ V KL L+ L +FDT D+T++E E I R K
Sbjct: 239 ALGEEFNL-PMGTNVTGKLAAALRRLNFDGVFDTDFGADVTIMEEGTELINRVK------ 291
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLG 217
+ LPM++S PGWI K + +Y ++P++SS KSPQ GA +K H + G
Sbjct: 292 ---NGGVLPMITSCSPGWI----KMIETYYPEMIPHLSSCKSPQNMTGALLKSHYAEMNG 344
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P ++ V+VMPC KK E R++ +D + +VD +TT E+ +I
Sbjct: 345 IDPKDLVVVSVMPCTAKKYEVQRDE--LSVDGNQ-----------DVDISITTRELARMI 391
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ ++F AL + D + ++ G++GG E R A L K I+ ++
Sbjct: 392 KEARLDFPALPDEEFDPYYGDYSGAAVIF---GATGGVMEAAVRTVADVLNDKDIQ-KID 447
Query: 338 FKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSG 395
++ +R D + +EV +K A+ G N++ ++ +K + DY F+E+MACP G
Sbjct: 448 YEAVRGVDGLKTAEVEVTPDLTVKVAVASGGSNIRKVMEGIKNGEYKDYHFIELMACPGG 507
Query: 396 CLNGGGQ--IKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSE 451
C+NGGGQ I K + + +Y E+ +NP V +Y+E+L +PG
Sbjct: 508 CVNGGGQPIISAKRKMEVDIRAERAKALYSEDASKKYRKSHQNPSVIRIYEEFLGEPGGH 567
Query: 452 KAKKHVHTEY 461
KA + +HT Y
Sbjct: 568 KAHELLHTTY 577
>gi|332981955|ref|YP_004463396.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
gi|332699633|gb|AEE96574.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
Length = 573
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 215/415 (51%), Gaps = 39/415 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
+S C+ C C T+ + E D+ I + K VI+ +P R S+AE F +
Sbjct: 186 LSDAGCILCGQCSTACPVAAIYENDETDKVWQAIFDPSKRVIVQTAPAIRVSIAEEFDMP 245
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V +L L+ LG +FDT + DLT++E +E + R + +LPM
Sbjct: 246 PGTVALGQLAAALRRLGFDDVFDTDFAADLTIMEEGHELLERLQHG---------GTLPM 296
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S PGWI + E Q +L ++S+ KSPQQ GA K + QK+G +P++I+ V++MP
Sbjct: 297 ITSCSPGWINFIE-QYYPDLLSHLSTCKSPQQMFGAVAKTYYAQKIGLKPEDIFVVSIMP 355
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E+ R + D G+ +VD LTT E+ +I+ ++F AL E
Sbjct: 356 CTAKKYESGRPEM-----------SDSGVR--DVDVALTTRELARMIRQAGIDFAALPEE 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREV 349
P D+ L G ++ G++GG E R + + G + L+F R +E
Sbjct: 403 PFDEPLGISTGAGAIF---GATGGVMEAALRTVYEVVTGNALP-VLDFTDGRGLKGIKEA 458
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+++++G + A+ +G N + ++ ++ DYQF+E+M CP GC+ GGGQ P +
Sbjct: 459 SMDLDGAN-VNVAVAHGIANAKKLLELIRNGAADYQFIEIMCCPGGCIGGGGQ----PYR 513
Query: 410 SPKELI-KTLETIY-LENVM-LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + + +E IY ++ M L +NP V++LY E+LE+P SEK+ +HT Y
Sbjct: 514 TTNAIRQQRIEAIYEVDKAMPLRKSHENPAVQALYKEFLEKPLSEKSHHLLHTTY 568
>gi|326201303|ref|ZP_08191175.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325988871|gb|EGD49695.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 562
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 201/414 (48%), Gaps = 46/414 (11%)
Query: 40 QVSTSSKQQAEPVKISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLS 97
QV+T+ + + V DC+ C C + ++ K+ +D + NK K VI ++
Sbjct: 174 QVTTAFNKSLQEV-----DCVNCGQCRVVCPTGALMIKKDIDRAYEALQNKNKRVIAQIA 228
Query: 98 PQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
P R ++ E FG+ P Q+ K+ L+ LG +FDT+ DLT+IE E + R ++
Sbjct: 229 PAVRVAIGEDFGLQPGQISMGKIVAALRKLGFDQVFDTAVGADLTVIEEAEELMDRIQRK 288
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
++ LP+ SS CP W YAE Q ++ +SS SP Q GA IK ++
Sbjct: 289 EK---------LPLFSSCCPSWFKYAE-QKHPELMENVSSCLSPMQMFGAVIKEQFKKEK 338
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
E + +MPC KK EAAR + + Q VD V+TT E+ +
Sbjct: 339 FSEEKENIVIAIMPCTAKKYEAARPENAINGERQ-------------VDMVITTQELAIM 385
Query: 277 IQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL 336
IQ + F LE+ +D G ++GV SGG +E V R+ K ++G +
Sbjct: 386 IQENGIVFNELEDEAIDMPFGFTSGAGVIFGV---SGGVSEAVLRYYYKERNASALKG-I 441
Query: 337 EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
+ +R + +E E++G+T+ + + +G +N + ++RK+K + + F+EVMACP G
Sbjct: 442 SYSGVRGMEGVKEATAEIDGRTV-RIGVVHGLKNAEKLIRKIKRGEEKFDFIEVMACPGG 500
Query: 396 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWL 445
C+ G GQ P+ E ++ L + V + P K NP + +LY+ L
Sbjct: 501 CIGGAGQPIPQ-----NENVRKLRAKGIYKVDKSLPIKRSDDNPTIDALYNGVL 549
>gi|451819272|ref|YP_007455473.1| [FeFe] hydrogenase, group A [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785251|gb|AGF56219.1| [FeFe] hydrogenase, group A [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 457
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 210/411 (51%), Gaps = 27/411 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C C ++E E + IN K K VI++ SP R SL E FG+
Sbjct: 58 CINCGQCANVCPVDSIIETYEFREVMEAINDKDKIVIVNTSPSVRVSLGEEFGMEDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LGV + DT+ DLT++E +E I R K+ N +LP +S C
Sbjct: 118 QGKMVALLRKLGVNYVLDTNFGADLTIMEEASELIERVKK---------NKNLPQFTSCC 168
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE I+P IS+ KSP G T+K + + + P +I +V + PC KK
Sbjct: 169 PAWVKFAETYYPE-IIPNISTSKSPIGMQGPTVKSYFAESMDIDPKKIVNVALTPCTAKK 227
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE+ Y D ++ ++D V+TT E+ + K ++F +LE+S D++
Sbjct: 228 FEIRREEM-----KDAGNYLDID-DMRDMDYVITTRELALWAKEKGIDFNSLEDSEFDRV 281
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R A + + KV + + K +R + +E +L++
Sbjct: 282 MGEASGAGVIFG---NTGGVMEAALRTAYEFITKEKVPDTLYDLKPVRGMEEMKEASLDI 338
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L A+ YG N++ ++ K+K Y F+EVM CP GC+ GGGQ K + + +
Sbjct: 339 -GDITLNVAVIYGTDNVRKMMDKLKTSDKQYHFIEVMTCPGGCIGGGGQAKHRIDKIKEA 397
Query: 414 LIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K + ++Y ++ + L KNP + LY+E+ +P SE A+K +HT Y+
Sbjct: 398 NEKRIMSLYDKDNKMKLRLSHKNPEIEMLYNEFYGEPLSELAEKMLHTSYY 448
>gi|154248935|ref|YP_001409760.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152871|gb|ABS60103.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 586
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/412 (32%), Positives = 209/412 (50%), Gaps = 39/412 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINK---GKAVIISLSPQSRASLAEHFGISPL 113
+C++C C + E + L+ +NK GK + +P R ++ E FG+ P
Sbjct: 188 NCISCGQCAYLCPVGAIYEAPDWKKVLNLLNKKEPGKVYVAQTAPSVRVAIGEEFGVEPG 247
Query: 114 QVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
V K+ L+ LG +FDT+ + DLT++E E I R + + PM +
Sbjct: 248 TVSTGKMVAALRRLGFDYVFDTNFAADLTIMEEGYELIHRLQ---------NGGKFPMFT 298
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGW+ EK+ + +S+ KSPQQ + + +K + QK+G +P++I V+VMPC
Sbjct: 299 SCCPGWVNEMEKEWPE-LRENLSTAKSPQQMMSSVVKTYFAQKIGVKPEDIVMVSVMPCT 357
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK E R + +G+++ D V+TT E+ LI+LK + F L E
Sbjct: 358 AKKDEITRPQQLV-----------DGIKV--TDYVITTRELGKLIKLKGIPFVNLPEEQY 404
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D L G L+GV +GG E R A + + G+ + L F ++R D RE +
Sbjct: 405 DSPLGTSTGAGALFGV---TGGVMEAALRTAYEVITGEKLP-KLVFDSVRGLDGVREAEI 460
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
+++GK L+ A+ +G N++ ++ ++K K Y FVE+MAC GC+ GGGQ K P
Sbjct: 461 DIKGKK-LRVAIAHGMANVKRLLAEMKEGKRYYDFVEIMACYGGCIGGGGQPK---NLDP 516
Query: 412 KELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K IY E +L +NP + LY+E+LE+P S KA +HT Y
Sbjct: 517 DILKKRAAAIYSIDELSVLRRSHENPDIIKLYEEFLEKPNSHKAHHLLHTHY 568
>gi|406982905|gb|EKE04167.1| hypothetical protein ACD_20C00099G0012 [uncultured bacterium]
Length = 588
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 215/415 (51%), Gaps = 46/415 (11%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
DC+ C C++ T L K +D + I ++ K VI ++P R +L E FG+ P +
Sbjct: 193 DCVYCGQCVSVCPTGALTIKSEIDNTWNAIFDEKKFVIAQIAPAVRVALGEAFGLKPGVN 252
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ LK +G +FDTS + D+T++E EFI R + ++ LP+ +S
Sbjct: 253 TIGLIVAALKKIGFNQVFDTSFAADMTVMEETAEFITRLQNGEK---------LPLFTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ +AE + +L +S+ KSPQQ G+ K ++ ++ P+ + V++MPC K
Sbjct: 304 CPAWVRFAELK-HPELLDNLSTCKSPQQMFGSIAKKYLTKEYNIEPENLTVVSIMPCTAK 362
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R++F + G++ +VD VLTT E++ +I+ ++ +E LD
Sbjct: 363 KAEAQRDEFA-----------ENGIQ--DVDIVLTTQELIRMIKEAGIDLNNIEPEELDT 409
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G SSGG AE V R A + + G +E + R D +E+ +++
Sbjct: 410 PFGILTGAGVIFG---SSGGVAEAVVRTAYEMVTGNALE-KFDITEARGLDKLKELTVDI 465
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G T ++ A+ G Q N+V K+ + Y VEVMACP GC+ GGGQ QS K+
Sbjct: 466 DG-TKVRIAIVNGLQEASNLVDKINKGEAHYDIVEVMACPGGCIGGGGQ-----SQSCKD 519
Query: 414 LIKTLETIYLENVMLAD-------PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
T+++ E + AD +NP V++LY + L+ P S+ + K +HT Y
Sbjct: 520 C--TIKSSRSEGLYKADKELPIHKSHENPEVQNLYKKLLQSPNSKISHKLLHTRY 572
>gi|301507726|gb|ADK77883.1| hydrogenase [Chlorella sp. DT]
Length = 434
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 201/406 (49%), Gaps = 42/406 (10%)
Query: 76 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDT 134
+Q+LDE + +I ++P R ++AE G++P V +L T L+ LG +FDT
Sbjct: 42 QQALDELAKPKESRRLMIAQIAPAVRVAIAETIGLAPGDVTIGQLVTGLRMLGFDYVFDT 101
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
DLT++E E + R + E + LPM +S CPGW+ EK ++PY+
Sbjct: 102 LFGADLTIMEEGTELLHRLQDHLEQHPNKEEP-LPMFTSCCPGWVAMVEKS-NPELIPYL 159
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSPQ +GA IK++ Q++G +P +I +V+VMPC K+ EA RE F +
Sbjct: 160 SSCKSPQMMLGAVIKNYYAQQVGVQPSDICNVSVMPCVRKQGEADREWF-----NTTGLA 214
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD V+TT EV + + + L ES D + L+ G++GG
Sbjct: 215 RD-------VDHVVTTAEVGKIFLERGIKLNELPESNFDNPIGEGTGGALLF---GTTGG 264
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIR----------------NSDFREVALEVEGKTL 358
E R + + K + G ++F+ +R +S F+ A
Sbjct: 265 VMEAALRTVYEVVTQKPM-GRVDFEEVRGLEGIKEAEITLKPGDDSPFKAFAGADGQGIT 323
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KT 417
LK A+ G N + +++ + K Y F+EVMACP GC+ GGGQ P + K+++ K
Sbjct: 324 LKIAVANGLGNAKKLIKSLSEGKAKYDFIEVMACPGGCIGGGGQ----PRSTDKQILQKR 379
Query: 418 LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +Y E + +NP +++LYD++L P S KA +HT Y
Sbjct: 380 QQAMYNLDERSAIRRSHENPFIQALYDKFLGAPNSHKAHDLLHTHY 425
>gi|325290294|ref|YP_004266475.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
gi|324965695|gb|ADY56474.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
Length = 521
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 215/423 (50%), Gaps = 32/423 (7%)
Query: 58 DCLACS-GCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--Q 114
+C C+ C T+A T + + Q + E L++ +K VI +P R ++ + +G P+
Sbjct: 117 NCGQCTHWCPTAAITEVDDTQKVWEALADPDK--IVIAQTAPAIRVAIGDDYGF-PIGTN 173
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ +G + DT+ + DLT++E +E + R K + M ++
Sbjct: 174 VEGKMVAALREIGFDYVADTNWAADLTIMEEASEHVHRLKDP--------TAPYTMFTTC 225
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E I P S+ KSPQ +GA IK + +K G P +I V VMPC K
Sbjct: 226 CPAWVKFMEYYYPEMI-PKYSTSKSPQAMMGAMIKTYFAEKKGIDPSKIVSVAVMPCAAK 284
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE +L+S + + G+ ++D VLTT E +++++K ++ L++S D
Sbjct: 285 KYECTRE----ELNSAAKYHNKPGMR--DIDVVLTTREFSEMLKMKKIDLAKLQDSDFDN 338
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH-LEFKTIRN-SDFREVALE 352
++ G+++ +SGG E R A G+ L+ + + +E LE
Sbjct: 339 LVGEASGAGYIFA---NSGGVIEAAVRTAYFLATGEQPPAVVLDLQPVHGLQGIKEATLE 395
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+ G K A+ G N + I + + ++ VEVMACP GC++GGGQ P+ P+
Sbjct: 396 IPGIGEEKIAVAQGLNNARKICDMINAGQAPWRLVEVMACPGGCISGGGQ--PRSSVPPQ 453
Query: 413 ELI--KTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+ + K +E +Y +++ + +NP ++ +Y E+L QP SE+A+ +HT Y P +
Sbjct: 454 DRVREKRIEAVYKIDKSMRIRLSHENPEIKKIYTEFLGQPLSEEAELLLHTHYVPKDHLL 513
Query: 469 TAQ 471
TA+
Sbjct: 514 TAK 516
>gi|188588162|ref|YP_001921431.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
Alaska E43]
gi|188498443|gb|ACD51579.1| hydrogenase [Clostridium botulinum E3 str. Alaska E43]
Length = 565
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 199/411 (48%), Gaps = 39/411 (9%)
Query: 58 DCLACSGCITSAET--VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ- 114
DC+ C C T ++++ + + N + V+ ++P R +L E FG+ P +
Sbjct: 188 DCVNCGQCANVCPTGAIVVKSDVKPVWKALYNPKQRVVAQVAPAVRVALGEEFGVKPGEN 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ ++ LG I+DTS + D+T+IE NEF+ Q ES D + LP+ +S
Sbjct: 248 VMDKIVAAMRKLGFDEIYDTSLTADMTIIEESNEFL----QKLESGDNK----LPLFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ Y E + ++ Y+S+ KSP Q G+ IK + + E V +MPC K
Sbjct: 300 CPAWVRYVETK-HPELMKYVSTCKSPMQMFGSVIKEYFKENDSLEEKETISVAIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAARE+F+ I ++D V+TT E+ +I + F+ +E D
Sbjct: 359 KAEAAREEFITN-------------GIKDIDYVITTTELCKMINEAGLQFDKIEPESSDM 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
+ G ++GV +GG E V R + K ++ +EF +R D ++
Sbjct: 406 PFSLYSGAGVIFGV---TGGVTEAVIRGVVEDKSSKALK-EIEFIGVRGMDGVKICEVPF 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---IKPKPGQSP 411
G+ L+ + G N +N++ K++ + + FVEVMACP GC+ G GQ +K +
Sbjct: 462 GEKNLRIGVVSGLANAENLIDKIQSGEEHFDFVEVMACPGGCIAGAGQPFSLKEGNKERA 521
Query: 412 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K L K + ++ +NP++ SLY+ L++ E HVH E+
Sbjct: 522 KGLYKVDKVTQIKRSQ-----ENPVLISLYNGLLKERSKELL--HVHYEHE 565
>gi|268323917|emb|CBH37505.1| putative Fe-only hydrogenase [uncultured archaeon]
Length = 569
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 215/413 (52%), Gaps = 43/413 (10%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISP-LQ 114
+C C CI + + EK +DE + I+ K V++ +P RA+L E FG++P
Sbjct: 188 ECTNCGQCIHACPVGAIKEKPCVDEVWAAIDDPEKHVVVQEAPAIRAALGEEFGLAPGTL 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ LK G ++FDT+ + DLT++E +E + R LP ++S
Sbjct: 248 VSGKMHAALKRFGFDAVFDTNFTADLTIMEEGSELVKRIN---------GGGVLPQITSC 298
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI +AE +L +IS+ KSPQQ G+ K + +K P +I V+VMPC K
Sbjct: 299 SPGWIKFAE-HFYPDLLDHISTCKSPQQMFGSLAKTYYAEKADMDPKKIVSVSVMPCTAK 357
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA+R + + Y+D VD VLTT E+ +I+ ++F +L + +
Sbjct: 358 KFEASRPEM------SDSGYQD-------VDYVLTTRELARMIKEAGIDFASLPDEEAEP 404
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
++ G ++G ++GG E R A K + GK +E +L+ +R + +E ++V
Sbjct: 405 LMGMYTGAGTIFG---ATGGVMEAALRTAYKLVTGKELE-NLDITPVRGMAGIKEATVDV 460
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G + K A+ +G N + ++ V++ K Y F+E+MACP GC+ GGGQ P
Sbjct: 461 DGLEV-KVAVAHGLGNARKLLDTVRVGKSPYHFIEIMACPGGCVGGGGQ----PISFDMA 515
Query: 414 LIKTL-ETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L T +T+Y E+ L P++ NP ++ LY+E+L +P EK+ +HT Y
Sbjct: 516 LRSTRGQTLYNEDAKL--PYRKSHENPSIKRLYEEYLGEPLGEKSHHLLHTRY 566
>gi|373489125|ref|ZP_09579788.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
gi|372004601|gb|EHP05240.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
Length = 669
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 200/414 (48%), Gaps = 37/414 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGI- 110
I+ DC+ C C + +S E + ++ + K VI+ ++P R+++AE FG+
Sbjct: 186 IAEVDCVNCGQCAAICPVGAITVKSDIEKVFDVLGDPSKTVIVQVAPAVRSAMAEAFGLP 245
Query: 111 -SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
++ T L+ LG K ++DTS + DLT+ E EFI R ++ LP
Sbjct: 246 NDTFTTMGRIVTALRRLGFKKVYDTSFTADLTIWEEATEFINRKQK---------GGKLP 296
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+ +S CP W+ AE L IL ISS +SPQ G+ K + +LG + +++ V+VM
Sbjct: 297 LFTSCCPAWVKLAEHDL-PEILDNISSCRSPQAMFGSLAKEILPGELGIQREDLVVVSVM 355
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA R +F + P+ D V+TT E+ +IQ + F L
Sbjct: 356 PCTAKKFEATRPEFAVDGN-------------PDTDLVITTQELARMIQDAGLLFGELPV 402
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
LD G ++ +SGG +E V R+ A G + E + + +R+ R +
Sbjct: 403 GSLDMPFGFKTGAGVIFA---NSGGVSEAVVRYVA----GHLGEENPVVQELRSDKNRRI 455
Query: 350 ALEVEGK-TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
LEV K ++ + YG Q +V++++ + D FVEVMACP GC+ G GQ
Sbjct: 456 -LEVPTKLGAIRMGVVYGLAEAQRLVKEIQAGQSDVDFVEVMACPGGCIGGAGQPVTHSA 514
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ ++ + + + + L P +N V+ +Y E LE P S +A +HT Y
Sbjct: 515 ATREQRTQAIRRVD-AALDLHCPQENHYVKEMYSERLESPNSHQAHHLLHTHYQ 567
>gi|402309362|ref|ZP_10828357.1| [FeFe] hydrogenase, group A [Eubacterium sp. AS15]
gi|400372857|gb|EJP25795.1| [FeFe] hydrogenase, group A [Eubacterium sp. AS15]
Length = 578
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 202/409 (49%), Gaps = 36/409 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
C C C+ T + E + ++ K VI+ ++P R +L E FG+ P +
Sbjct: 194 CTFCGQCLAVCPTGALTEVNNTPHVWDVLHSDKTVIVQVAPAVRVALGEEFGMEPGTIVT 253
Query: 118 -KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ LK LG IFDT+ + DLT++E +EF+ R + LP+L+S CP
Sbjct: 254 GKMINALKYLGFDKIFDTNFAADLTIMEEASEFVHRLN---------NGGKLPILTSCCP 304
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
W+ + E Q + L S+ KSP + GA K ++ QKL P + V+VMPC KK
Sbjct: 305 SWVNFFEHQFTDF-LDIPSTCKSPHEMFGAIAKTYLAQKLNIDPKNMVLVSVMPCVAKKY 363
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL-EESPLDKM 295
EAAR E G +VD V+TT E+ +I+ +NF L +++ D
Sbjct: 364 EAAR----------PELGNGAG---KDVDYVITTRELALMIKEAGINFGELGDDAEFDNP 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ G ++ G++GG E R A + + G + LEF+ +R + ++ ++++
Sbjct: 411 MGASTGAGVIF---GATGGVIEATVRTAYEWITGNELP-KLEFEELRGLEGIKQTTVDID 466
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ ++ A+ G N + ++ ++ + + +EVMACP GC+ G GQ P + +
Sbjct: 467 GRP-IRIAVANGLGNTRRLLNMIRDNEAHFDAIEVMACPGGCVGGAGQ--PYHKGNLDVI 523
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K + IY + + +NP++ LY E+L +P SEKA + +HT Y
Sbjct: 524 RKRAQGIYKADRDNKIRKSHENPMIIQLYKEFLGEPYSEKAHELLHTSY 572
>gi|326202424|ref|ZP_08192293.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325987542|gb|EGD48369.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 592
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 200/411 (48%), Gaps = 40/411 (9%)
Query: 59 CLACSGCI----TSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
C C C+ T+A T + + E +S+ +K VI+ +P R +L E FG+ P
Sbjct: 208 CTYCGQCVQVCPTAALTEVYHTDKVWEAISDPDK--YVIVQTAPAIRVALGELFGMEPGT 265
Query: 115 VFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ K+ T LK +G ++FDT DLT++E +E I R K +N +LP+L++
Sbjct: 266 IVTGKMVTALKRMGFDAVFDTDFGADLTIMEEASELIYRLK---------NNKTLPILTN 316
Query: 174 ACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
CP W+ + E Q I +P S+ KSP +G K + +K G P+ I V++MPC
Sbjct: 317 CCPAWVKFIEHQFPELIHVP--STCKSPHIMLGTIAKTYYAKKNGIDPNNIVVVSIMPCI 374
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK EA R + +DE VD +TT E+ +I+ + F L +S
Sbjct: 375 AKKAEAKRPELT----------KDEH---NNVDISITTRELGAMIREAGIEFTMLPDSEF 421
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
D L ++G AG G E R A++ L GK +E ++F+ +R D A
Sbjct: 422 DSPLGETTGASVIFGTAG---GVIEAALRTASEWLTGKPLE-KVDFEELRGMDGVRRATV 477
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G LK + G N ++I+ ++ K DY +E+MACP GC+ GGGQ P + +
Sbjct: 478 KIGDQELKIGIASGLGNARHILEDIRDGKADYHAIEIMACPGGCIAGGGQ--PYHHGNDE 535
Query: 413 ELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K +E IY E+ + +N + LY +L +P E A + +HT +
Sbjct: 536 IIKKRIEAIYEEDRRKPVRKSHENKEILELYKTYLGEPFGELAHELLHTHF 586
>gi|383785983|ref|YP_005470552.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
gi|383108830|gb|AFG34433.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
Length = 588
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 211/412 (51%), Gaps = 39/412 (9%)
Query: 58 DCLACSGCITSAETVML----EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL 113
DC++C C + + + + + L++ GK + +P R ++ E FG+ P
Sbjct: 188 DCISCGQCANLCPVGAIYEAPDWKKVWKMLNSKEPGKVYVAQTAPSVRVAIGEEFGMEPG 247
Query: 114 QVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 172
+ K+ L+ LG +FDT+ + DLT++E E I R + + PM +
Sbjct: 248 SISTGKMVAALRRLGFDYVFDTNFAADLTIMEEGYELIGRLQ---------NGGKFPMFT 298
Query: 173 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232
S CPGW+ EK+ + ++S+ KSPQQ + + +K + QK+G +P++I V++MPC
Sbjct: 299 SCCPGWVNEMEKEWPE-LREHLSTAKSPQQMMSSVVKTYFAQKIGVKPEDIVMVSIMPCT 357
Query: 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 292
KK E R + +G+++ D V+TT E+ LI+LK + F L E
Sbjct: 358 AKKDEITRPQQLV-----------DGIKV--TDYVITTRELGKLIKLKGIPFVNLPEEQY 404
Query: 293 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
D L L+GV +GG E R A + L G+ + L F+++R D RE +
Sbjct: 405 DSPLGTSTGAAALFGV---TGGVMEAALRTAYEVLTGEKLP-KLVFESVRGLDGVREAEI 460
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
+++G+ L K A+ +G +++ ++R++K K Y FVE+MAC GC+ GGGQ K P
Sbjct: 461 DIKGRKL-KVAIAHGMASVKKLLREMKEGKRYYDFVEIMACLGGCIGGGGQPK---SLDP 516
Query: 412 KELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K + IY E +L +NP + LY+E+LE+P S A +HT Y
Sbjct: 517 DILKKRAQAIYTIDELSVLRRSHENPDIIKLYEEFLEKPNSHIAHHLLHTHY 568
>gi|225016115|ref|ZP_03705348.1| hypothetical protein CLOSTMETH_00059 [Clostridium methylpentosum
DSM 5476]
gi|224951112|gb|EEG32321.1| hypothetical protein CLOSTMETH_00059 [Clostridium methylpentosum
DSM 5476]
Length = 338
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 177/359 (49%), Gaps = 31/359 (8%)
Query: 114 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ L+ LG +FDT DLT++E NEFI R + + LPM++S
Sbjct: 6 NVKGKMVAALRRLGFDKVFDTDFGADLTIMEEANEFIERVQ---------NGGKLPMITS 56
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI Y E +L +S+ KSPQQ GA IK ++ G P +I V++MPC
Sbjct: 57 CSPGWINYCEHYFPD-MLDNLSTCKSPQQMTGAMIKTWYAEQNGLDPKDIVVVSIMPCTA 115
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E R D + P++D VLTT E+ +I +NF L + D
Sbjct: 116 KKYEIHRAD-------------QDAAGYPDIDIVLTTRELARMINRAHINFTDLPDEEFD 162
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
L G ++ G++GG E R AA + GK + + +R +D + A
Sbjct: 163 PALGITTGAGAIF---GATGGVMEAALRTAADWITGKDLSVIDYYTDVRGTDGIKTATYD 219
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 412
+K + G N + ++ +V+ + + F+E+M CP GC+NGGGQ ++P +
Sbjct: 220 IKDLTIKVGVASGLANAKELLNRVREGE-HFDFIEIMCCPGGCVNGGGQPLQPSSIYNFT 278
Query: 413 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+L K + +Y E+ + + K+P++ LY E+LE+PGS KA + +HT Y VK +
Sbjct: 279 DLKTKRAKALYDEDKELPIRKSHKSPIIEKLYKEYLEKPGSHKAHELLHTSYSAKVKPV 337
>gi|333978446|ref|YP_004516391.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821927|gb|AEG14590.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 608
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 128/427 (29%), Positives = 216/427 (50%), Gaps = 39/427 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC++C C+ T + E++ +DE I + K V++ +P + +L E FG+ V
Sbjct: 210 DCISCGQCVMVCPTGALTEREYIDEVWRAIEDPDKFVVVQAAPAIQVTLGEAFGLGAGTV 269
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ KL L+ LG +F T + DLT++E +E + R K + LP++SS
Sbjct: 270 VRGKLAAALRRLGFDRVFTTELAADLTIVEEAHELLERLK---------GHGKLPLISSC 320
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E + L +S+ KSP + GA K + +K G P ++ V VMPC K
Sbjct: 321 SPGWVKFCEHFYPEF-LDNLSTCKSPMEMFGALAKTYYAEKEGLDPKKMVVVGVMPCTAK 379
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR + V + GL +VD VLTT E+ +I+ + F+ L + D+
Sbjct: 380 KFEAARPELVTR-----------GLR--DVDYVLTTRELARMIRQAGIRFDELADEEFDQ 426
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L G ++ ++GG E R A + G+ + LEF+ R +E L++
Sbjct: 427 PLGLSTGAGVIF---AATGGVMEAAIRTAYALVEGRDLPTRLEFREFRGLRGIKEARLKL 483
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG-----GQIKPKPG 408
+ +T L+ A+ +G +N + ++ ++K R + F+E+MACP GC+ GG G++ +
Sbjct: 484 KNQT-LRLAVAHGTRNARRLLERIK-RGEKFHFIEIMACPGGCVGGGGQPILGRLNRREA 541
Query: 409 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
+ + ++ + +Y N L +NP V+ +Y E+L P SEKAK+ +HT Y P +
Sbjct: 542 KMVERRMQRAQALYKIDLNKKLRRAHENPAVQQIYREFLGHPLSEKAKEILHTRYTPRGR 601
Query: 467 SITAQLH 473
+ LH
Sbjct: 602 TNHRLLH 608
>gi|320354002|ref|YP_004195341.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032]
gi|320122504|gb|ADW18050.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032]
Length = 533
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 208/429 (48%), Gaps = 31/429 (7%)
Query: 51 PVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ ++ L I +K VI+ +P +R ++ E F
Sbjct: 105 PIKDDIT-CVNCGQCALWCPTGAISERDDIERVLKVISDKNLHVIVQTAPATRIAIGEEF 163
Query: 109 GISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN-- 165
G+ + + K+ LK LG +FDT+ S DLT++E E + R K + +
Sbjct: 164 GMPAGSIVEGKMVAALKLLGFDRVFDTNFSADLTIMEEGTELVNRIKAAGGHGEGGHGHA 223
Query: 166 -SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 224
++LP +S PGW+ + E +L ++S+ KSPQQ +G+ K + +K G P +I
Sbjct: 224 PTALPQFTSCSPGWVKFCE-YFYPDLLDHMSTCKSPQQMLGSVAKTYYAKKKGIDPKQIV 282
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
V++MPC KK EAAR + E+ +VD VLTT E+ +I+ K ++
Sbjct: 283 SVSIMPCTAKKFEAARGEM------NSAGIMAGTPELRDVDFVLTTRELARMIKGKGIDL 336
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN 343
L+ P D ++ ++ ++GG E R L G+ E L +R
Sbjct: 337 AKLDPQPYDSLMGEGTGAAVIF---AATGGVMEAAIRSGYYLLTGENPPEALLNLAAVRG 393
Query: 344 -SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM-----RKCDYQFVEVMACPSGCL 397
+E +LEV G L+ A+ G N + ++ +++ R Y F+E MACP GC+
Sbjct: 394 LQGVKEASLEVPGVGELRVAVASGLANGRQLLDQIRADKQAGRPPRYHFIEFMACPGGCI 453
Query: 398 NGGGQIKPKPGQSPKELIK--TLETIYLENVMLAD---PFKNPLVRSLYDEWLEQPGSEK 452
+GGGQ PK P + ++ L++IY + + +N V LY ++L +P E
Sbjct: 454 SGGGQ--PKTSVPPSDWVRQERLKSIYTIDAKIYKKRLSHENKEVMDLYADYLGKPNGEM 511
Query: 453 AKKHVHTEY 461
A K +HT Y
Sbjct: 512 AHKLLHTTY 520
>gi|302340161|ref|YP_003805367.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
gi|301637346|gb|ADK82773.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
Length = 583
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 204/416 (49%), Gaps = 40/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C+ C C + EK + L+ I + K V + ++P R +L E FG+ P ++
Sbjct: 191 CIKCGQCSAHCPVGAIFEKDETGKLLAAIRDPEKHVAVQIAPAVRVALGEAFGMEPGEIS 250
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG+ ++FDT+ S DLT++E +E + R + ++P ++S C
Sbjct: 251 TGKIYAALRKLGIDAVFDTNFSADLTIMEEGSELVQRLT--------KGTGAIPQITSCC 302
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W + EK I P S+ KSP GA K + +K P IY +MPC KK
Sbjct: 303 PAWTDFMEKYYPDMI-PNFSTAKSPMMMQGAITKTYYAEKKKIDPANIYSAAIMPCTAKK 361
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + ++ Q +VD VLTT E+ LI+ ++F +L++ D
Sbjct: 362 YEITRCEKMYSSGYQ------------DVDVVLTTRELARLIKAMGIDFASLKDEKADSP 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ G ++GV +GG E R A K + GK +E +E +R + R+ ++++
Sbjct: 410 IGAYSGAGTIFGV---TGGVMEAALRTAHKLITGKELE-KVEVNEVRGVEGVRKGEVDID 465
Query: 355 GKTLLKFALCYGFQNLQNIVRKV-----KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
GK +K A+ +G N+ I+ +V K + Y F+EVMAC GC++GGGQ G
Sbjct: 466 GKK-VKVAIAHGMANVSQILDEVRDAREKGEEPPYHFIEVMACRGGCISGGGQ---PYGT 521
Query: 410 SPKELIKTLETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + K + +Y ++V A +NP + +Y E+L +P K+ + +HT Y P
Sbjct: 522 TDEVRKKRIAGLYKDDVNSAVRCSHENPEISQIYKEFLGEPLGHKSHELLHTGYTP 577
>gi|309777308|ref|ZP_07672270.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53]
gi|308914988|gb|EFP60766.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53]
Length = 576
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 208/415 (50%), Gaps = 37/415 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGIS 111
I DC C CIT L ++ + +N + I+ ++P RA+ E G+S
Sbjct: 183 IEEADCSLCGQCITHCPVNALHVREDSERAFDALNDPDTITIVQIAPAVRAAWGESLGLS 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ +KL + +G +FDT + DLT++E +EF++R + + E LPM
Sbjct: 243 RAEATIEKLGDAFRRMGADYVFDTDFAADLTIMEEASEFLSRLQHTDEH-------KLPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q ++ +S+ KSP Q GA K KLG +IY+++VMP
Sbjct: 296 FTSCCPGWVRFLKSQYPD-MVSQLSTSKSPHQMFGAVTKTWFADKLGVDASKIYNISVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E D DS YRD VD VLTT EV+ +I + ++ L++
Sbjct: 355 CVAKKHEI---DIPVMQDS---GYRD-------VDVVLTTREVIRMIHAEHIDVSYLQDI 401
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
PLD L G ++G ++GG E R A + G+ F +R D ++E
Sbjct: 402 PLDDPLGTASGAGVIFG---ATGGVMEAALRSAYYFVIGENANPD-AFTAVRGMDGWKEA 457
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
A +++G T+ + A+ G N + ++ ++ + Y FVEVMACP GC GGGQ P
Sbjct: 458 AFDIQGITV-RCAIVSGLGNTRRLIEAMRRGEVSYDFVEVMACPGGCSGGGGQ----PIH 512
Query: 410 SPKELIKT-LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++L ET+Y + L +NP + +LY+E+L +P SE A+K +HT++
Sbjct: 513 DGEDLAAIRAETLYCLDQQAELRYSHENPSIHTLYEEYLGEPLSELAEKLLHTDH 567
>gi|306821642|ref|ZP_07455240.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550387|gb|EFM38380.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 578
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 202/409 (49%), Gaps = 36/409 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK 117
C C C+ T + E + ++ K VI+ ++P R +L E FG+ P +
Sbjct: 194 CTFCGQCLAVCPTGALTEVNNTPHVWDVLHSDKTVIVQVAPAVRVALGEEFGMEPGTIVT 253
Query: 118 -KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ LK LG +FDT+ + DLT++E +EF+ R + LP+L+S CP
Sbjct: 254 GKMINALKYLGFDKVFDTNFAADLTIMEEASEFVHRLN---------NGGKLPILTSCCP 304
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
W+ + E Q + L S+ KSP + GA K ++ QKL P + V+VMPC KK
Sbjct: 305 SWVNFFEHQFTDF-LDIPSTCKSPHEMFGAIAKTYLAQKLNIDPKNMVLVSVMPCVAKKY 363
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL-EESPLDKM 295
EAAR E G +VD V+TT E+ +I+ +NF L +++ D
Sbjct: 364 EAAR----------PELGNGAG---KDVDYVITTRELALMIKEAGINFGELGDDAEFDNP 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ G ++ G++GG E R A + + G + LEF+ +R + ++ ++++
Sbjct: 411 MGASTGAGVIF---GATGGVIEATVRTAYEWITGNELP-KLEFEELRGLEGIKQTTVDID 466
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ ++ A+ G N + ++ ++ + + +EVMACP GC+ G GQ P + +
Sbjct: 467 GRP-IRIAVANGLGNTRRLLNMIRDNEAHFDAIEVMACPGGCVGGAGQ--PYHKGNLDVI 523
Query: 415 IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K + IY + + +NP++ LY E+L +P SEKA + +HT Y
Sbjct: 524 RKRAQGIYKADRDNKIRKSHENPMIIQLYKEFLGEPYSEKAHELLHTSY 572
>gi|310778437|ref|YP_003966770.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926]
gi|309747760|gb|ADO82422.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926]
Length = 572
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 200/413 (48%), Gaps = 32/413 (7%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS 111
+S C++C C+ ++E ++ E + K K I+ ++P + ++ E F I+
Sbjct: 183 LSETKCISCGQCVKVCPVGALVENNTVSELSRELKKREKHFIVQMAPAIKHTIGEEFFIA 242
Query: 112 PLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P Q V + LK LG +F T S D+T++E E I R + + PM
Sbjct: 243 PGQDVTSMMVGALKKLGFSKVFSTDYSADVTIMEEGTELIQRLTKGK--------GKTPM 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ Y EK + L +SS KSPQQ GA K + ++ ++I V++MP
Sbjct: 295 FTSCCPGWVNYVEKNHPEF-LGNLSSCKSPQQIFGALAKSYYAEESKVPKEDIVVVSIMP 353
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA R +++ + + +VD V+TT E L+++ +NF AL
Sbjct: 354 CTAKKGEAQR----IEMEDHDR--------VRDVDVVITTREFAKLVKMNNINFAALPNG 401
Query: 291 -PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFRE 348
D + G L+G +SGG E R A T+ + G LEF+ IR + +E
Sbjct: 402 QEYDSFMGKGSSAGRLFG---TSGGVMEAALRTVA-TILSEEKVGVLEFEEIRGFKNVKE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+E+ G+ LK A+ G + +++ +K + Y FVEVMAC GC++GGG P
Sbjct: 458 TTVEI-GENKLKLAVVNGIGSAHSVMEGIKSGRLYYDFVEVMACHGGCISGGGAPIPDNL 516
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ ++ + + + L NP ++ LY+ +LE P K+ +HT Y
Sbjct: 517 DVRRQRMEGMHG-FDKTSTLRRSHDNPEIKRLYENYLEDPCGHKSHHLLHTTY 568
>gi|219126216|ref|XP_002183358.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405114|gb|EEC45058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 627
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 155/527 (29%), Positives = 227/527 (43%), Gaps = 143/527 (27%)
Query: 16 DFIAPSQN-CVVSLKKATFKNPDKPQVST--SSKQQAEPVKISLKDCLACSGCITSAETV 72
D A S+N +V K+ + P S+ + + +PV+ S+ DCLACSGC+T+AETV
Sbjct: 56 DTAAASENPAIVPRKRVRRRLPAAITASSDWTPRVPKDPVQASIADCLACSGCVTTAETV 115
Query: 73 MLEKQ----SLDEFLSNI-NKGKAVIISLSPQSRASLAEH----FGISP---LQVFKKLT 120
+LE Q +L E ++ N ++ ++SP + A L H F SP L ++ T
Sbjct: 116 LLETQHSVVALKELIAKKENDRPKIVATISPAAWADLHRHLSREFNCSPSLSLSAQQRWT 175
Query: 121 TFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDD------------------ 161
L ++L + S+ D + +L EA EF YK+ Q ++D
Sbjct: 176 ILLWRALKISSVLDGNIPLAWSLEEAALEFCRAYKRKQTTNDPDAMAVDVPQDELWQQQL 235
Query: 162 ------ERSNS---------------------SLPMLSSACPGWICYAEKQLGSYILPYI 194
RS S SLP+LS +CP +C EK + P++
Sbjct: 236 IPSFAESRSQSQYYVNGETKTVYHDGGAQQAGSLPLLSGSCPAVVCLVEKSTHKAV-PHL 294
Query: 195 SSVKSPQQTIGATIK-HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 253
++ KSP G K H + E YHV +MPC+DKKLEA+R+DF ++E+
Sbjct: 295 ATTKSPLALAGEFWKRQHFDKHTSLPRQEYYHVAIMPCHDKKLEASRKDF------EDES 348
Query: 254 YRDEGLEIPEVDSVLTTGEVLDLIQ-LKAVNFEAL----EESPLDKM------------- 295
+D VD V+TT E + LIQ L V+ + + E PL +
Sbjct: 349 GKD-------VDIVITTQECMRLIQELLDVSIDDIVKCFRELPLATLSDCTSFTKAAEPV 401
Query: 296 ------------LTNVDDE-GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH------- 335
LT D E SGGYA +F +AAK LFG ++ H
Sbjct: 402 LIADSNSHCITTLTTEDAEISSNAAFTLGSGGYASFIFAYAAKRLFGVQLDAHELPWEPV 461
Query: 336 -----------LEFKTIRNSDFREVAL--------------EVEGKTLLKFALCYGFQNL 370
+ T R D+ VAL + K +L FA+ YG Q L
Sbjct: 462 GPDQAGRVSARVAASTQRRRDYYHVALYRSQDGNFTTNANLSSDSKPILHFAIAYGMQTL 521
Query: 371 QNIVRKVKMRKCD----YQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
Q +++ Y +VE MACPSGC+NGGGQI+ ++P E
Sbjct: 522 QRVLKPYTSEHLQSGIGYDYVEAMACPSGCVNGGGQIRTSARETPTE 568
>gi|255524302|ref|ZP_05391260.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296185259|ref|ZP_06853669.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7]
gi|255511985|gb|EET88267.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296050093|gb|EFG89517.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7]
Length = 580
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 203/415 (48%), Gaps = 48/415 (11%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINK--------GKAVIISLSPQSRASLAEHFGI 110
C C C++ T L + +SN+ K K V++ +P R +L E FG+
Sbjct: 196 CTFCGQCVSVCPTAALTE------VSNVAKVWEVIADPDKYVVVQTAPAIRVALGEKFGM 249
Query: 111 SPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
P + K+ L+ LG + DT + D+T++E +EFI R + + LP
Sbjct: 250 EPGTIVTGKMVAALRRLGFDKVCDTDFAADVTILEEAHEFIDRLQ---------NGGRLP 300
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+L+S CP W+ + E Q +L S+ KSP G K ++ +KL P +I V+VM
Sbjct: 301 ILTSCCPSWVKFIEHQFPD-LLDIPSTCKSPHIMFGTLAKTYMAEKLNIDPSKIVVVSVM 359
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E +R +L+ + E VD V+TT E+ D+I ++F L +
Sbjct: 360 PCIAKKYEISRP----ELEHEGEK---------NVDLVVTTRELADMIMEAGIDFNKLPD 406
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D L ++G ++GG E R A + + G+ ++ +EF ++R D +E
Sbjct: 407 EDFDNPLGESTGASVIFG---TTGGVIEAALRTAYEWITGETLK-EVEFHSVRGLDGLKE 462
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
++ + GK + + +G N + ++ +++ + Y +E+MACP GC++GGGQ P
Sbjct: 463 ASVNIGGKEI-NIGVAHGLGNARKLLEEIESGESKYHAIEIMACPGGCIDGGGQ--PYHF 519
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K +E IY E N L +NP V++LY E++ + G +KA +HT Y
Sbjct: 520 GDLDIVKKRMEAIYKEDRNKTLRKSHENPEVQALYKEFIGEVGGKKAHDLLHTHY 574
>gi|42527101|ref|NP_972199.1| Fe-hydrogenase [Treponema denticola ATCC 35405]
gi|449102574|ref|ZP_21739322.1| hydrogenase, Fe-only [Treponema denticola AL-2]
gi|449111837|ref|ZP_21748406.1| hydrogenase, Fe-only [Treponema denticola ATCC 33521]
gi|449113356|ref|ZP_21749861.1| hydrogenase, Fe-only [Treponema denticola ATCC 35404]
gi|41817525|gb|AAS12110.1| Fe-hydrogenase [Treponema denticola ATCC 35405]
gi|448957108|gb|EMB37861.1| hydrogenase, Fe-only [Treponema denticola ATCC 33521]
gi|448959566|gb|EMB40285.1| hydrogenase, Fe-only [Treponema denticola ATCC 35404]
gi|448966163|gb|EMB46821.1| hydrogenase, Fe-only [Treponema denticola AL-2]
Length = 596
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 209/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + N K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + ++D VLTT E + +++ + E L+E+
Sbjct: 355 CVAKKSEIDMELFYGEYAGH------------DMDCVLTTREFVRMLKSAHILPETLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|336428255|ref|ZP_08608239.1| hypothetical protein HMPREF0994_04245 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336006491|gb|EGN36525.1| hypothetical protein HMPREF0994_04245 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 571
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 205/414 (49%), Gaps = 41/414 (9%)
Query: 53 KISLKDCLACSGCITSAETVMLE-KQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
K++ DC+ C C T ++ K +D+ ++ + K V++ ++P R +L E FG+
Sbjct: 183 KLAETDCVNCGQCAAVCPTAAIKVKTDMDKVWRSLYDPSKRVVVQVAPAVRVALGEAFGL 242
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
P + ++ T ++ LG +++DT DLT++E E + ES D+R P
Sbjct: 243 QPGEDSIGRIFTAIRMLGFDAVYDTCVGADLTIMEEAKEL----AEKLESGDDR----FP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+ +S CP WI +AE + ILPYIS+ KSP + GA +K + +K V +M
Sbjct: 295 LFTSCCPAWIRFAETRHPD-ILPYISTCKSPMEMFGAVLKEYYKEKDAEEEKSTISVAIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK+EA RE+F RD IP+VD V+TT E++ +I+ + F+ ++
Sbjct: 354 PCVAKKMEAVREEF----------KRD---GIPDVDYVITTKELIRMIRESGIQFDEIDP 400
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D + G ++GV +GG E R + + + ++F IR + +E
Sbjct: 401 EAPDMPFSISSGAGVIFGV---TGGVTEAALRRLVQEKSTQALR-DIKFSGIRGMEGVKE 456
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
LE+ G+T L+ + G N +++ K+K + + FVEVMACP GC+ G GQ P
Sbjct: 457 ALLELNGRT-LRIGVVSGLGNADDLIEKIKSGEEHFDFVEVMACPYGCIAGAGQ----PF 511
Query: 409 QSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVH 458
+ + ++ +Y + A P K NP++ +LY+ G E HVH
Sbjct: 512 CHKVDKKERIDGMYRSD--KAAPIKRSEENPVIYTLYNNGGLLEGREHELLHVH 563
>gi|379012527|ref|YP_005270339.1| iron hydrogenase HydA1 [Acetobacterium woodii DSM 1030]
gi|375303316|gb|AFA49450.1| iron hydrogenase HydA1 [Acetobacterium woodii DSM 1030]
Length = 583
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 206/431 (47%), Gaps = 48/431 (11%)
Query: 48 QAEPV-KISLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRA 102
Q +PV SL D C+ C CI + L EK + I + K VI+ +P RA
Sbjct: 177 QVQPVFNKSLADVGCINCGQCIINCPVGALKEKSDIQRVWDAIADPSKTVIVQTAPAVRA 236
Query: 103 SLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESD 160
+L E FG P+ V K+ L+ LG +FDT D+ ++E E I R
Sbjct: 237 ALGEEFGY-PMGTSVTGKMAAALRRLGFDKVFDTDFGADVCIMEEGTELIGRVT------ 289
Query: 161 DERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220
+ LPM++S PGWI + E I P++SS KSPQ GA +K+H Q P
Sbjct: 290 ---NGGVLPMITSCSPGWIKFIETYYPEAI-PHLSSCKSPQNITGALLKNHYAQTNNIDP 345
Query: 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
++ V++MPC KK E RE+ ++ +VD +TT E+ +I+
Sbjct: 346 KDMVVVSIMPCTAKKYEVQREELCTDGNA-------------DVDISITTRELARMIKEA 392
Query: 281 AVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ F L + D D G G A G++GG E R A L K I+ ++
Sbjct: 393 RILFNKLPDEDFD------DYYGESTGAAVIFGATGGVMEAAVRTVADVLNKKDIQ-EID 445
Query: 338 FKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSG 395
++ +R D ++ ++EV + + +G N++ ++ ++K + D F+E+MACP G
Sbjct: 446 YQIVRGVDGIKKASVEVTPDLTVNLVVAHGGANIREVMEQLKAGELADTHFIELMACPGG 505
Query: 396 CLNGGGQ--IKPKPGQSPKELIKTLETIYLE--NVM-LADPFKNPLVRSLYDEWLEQPGS 450
C+NGGGQ + K + + +Y E NV+ +NP V LY+E+LE+P S
Sbjct: 506 CVNGGGQPIVSAKDKMDIDIRTERAKALYDEDANVLTYRKSHQNPSVIRLYEEYLEEPNS 565
Query: 451 EKAKKHVHTEY 461
KA +HT+Y
Sbjct: 566 PKAHHILHTKY 576
>gi|15893326|ref|NP_346675.1| hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
gi|337735237|ref|YP_004634684.1| hydrogene dehydrogenase [Clostridium acetobutylicum DSM 1731]
gi|384456746|ref|YP_005669166.1| Hydrogene dehydrogenase [Clostridium acetobutylicum EA 2018]
gi|15022848|gb|AAK78015.1|AE007516_6 Hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
gi|557064|gb|AAB03723.1| hydrogenase I [Clostridium acetobutylicum ATCC 824]
gi|325507435|gb|ADZ19071.1| Hydrogene dehydrogenase [Clostridium acetobutylicum EA 2018]
gi|336292537|gb|AEI33671.1| hydrogene dehydrogenase [Clostridium acetobutylicum DSM 1731]
Length = 582
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 195/414 (47%), Gaps = 41/414 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQV 115
CL C C+ + L EK +++ +N K VI++++P R ++ E F + V
Sbjct: 189 CLLCGQCVIACPVAALKEKSHIEKVQEALNDPKKHVIVAMAPSVRTAMGELFKMGYGKDV 248
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KL T L+ LG +FD + D+T++E E + R K +N PM +S C
Sbjct: 249 TGKLYTALRMLGFDKVFDINFGADMTIMEEATELLGRVK---------NNGPFPMFTSCC 299
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ A+ +L +SS KSPQQ G K + G P+++Y VT+MPC DKK
Sbjct: 300 PAWVRLAQ-NYHPELLDNLSSAKSPQQIFGTASKTYYPSISGIAPEDVYTVTIMPCNDKK 358
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA D F + + RD +D+ LTT E+ +I+ + F LE+ +D
Sbjct: 359 YEA---DIPFM---ETNSLRD-------IDASLTTRELAKMIKDAKIKFADLEDGEVDPA 405
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
+ G ++ G++GG E R A K +E ++++ +R +E +E+
Sbjct: 406 MGTYSGAGAIF---GATGGVMEAAIRSAKDFAENKELE-NVDYTEVRGFKGIKEAEVEIA 461
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G L A+ G N ++ KM + Y F+EVMACP GC+NGGGQ P +E
Sbjct: 462 GNK-LNVAVINGASNFFEFMKSGKMNEKQYHFIEVMACPGGCINGGGQ--PHVNALDREN 518
Query: 415 I--KTLETIYLEN-----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L L N + NP + +YD + +PG A K +H +Y
Sbjct: 519 VDYRKLRASVLYNQDKNVLSKRKSHDNPAIIKMYDSYFGKPGEGLAHKLLHVKY 572
>gi|325278931|ref|YP_004251473.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712]
gi|324310740|gb|ADY31293.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712]
Length = 587
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 217/427 (50%), Gaps = 32/427 (7%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSP 98
+ST + EP +S C C C+ + E + +S++ N K VI+ +P
Sbjct: 180 ISTIAPAFDEP--LSNSACTFCGQCVAVCPVGALTEVDHTNRLISDLSNPKKTVIVQTAP 237
Query: 99 QSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
RA+L E FG++P V K+ L+ LG +FDT + DLT++E +E + R +
Sbjct: 238 AVRAALGEEFGLTPGTSVTGKMVAALRQLGFDKVFDTDFAADLTIMEEGSELLDRLTRYL 297
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
+ D + LP+L+S CP W+ + E Q +L S+ +SPQQ GA K++ +K+
Sbjct: 298 KGD---KDVCLPILTSCCPAWVNFFEHQFPD-MLDIPSTARSPQQMFGAIAKNYWAEKMN 353
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
+++ V++MPC KK E ARE+F Q D P+V+ L+T E+ LI
Sbjct: 354 IPREDLIVVSIMPCLAKKYECAREEFATQGD-------------PDVNYSLSTRELASLI 400
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ ++F +L + D L G ++ G+SGG E R A + GK ++ ++
Sbjct: 401 KRANIDFNSLADEDFDHPLGESTGAGVIF---GASGGVMEAALRTAYELYTGKTLD-KVD 456
Query: 338 FKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 396
FK +R + ++ +++ G L + +G N + ++ +++ K ++ +E+MACP GC
Sbjct: 457 FKEVRGLENIKKATIKLNG-VELHVGIAHGLGNARKLLNEIREGKSEFHAIEIMACPGGC 515
Query: 397 LNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAK 454
+ GGGQ P + L + IY E+ L +NP + LY+E+L +P SEKA
Sbjct: 516 IGGGGQ--PLHHGNSALLKARSQAIYQEDEHKPLRKSHENPDIIKLYEEYLGKPLSEKAH 573
Query: 455 KHVHTEY 461
+HT Y
Sbjct: 574 HLLHTHY 580
>gi|159470457|ref|XP_001693376.1| iron hydrogenase [Chlamydomonas reinhardtii]
gi|9837540|gb|AAG00591.1|AF289201_1 Fe-hydrogenase precursor [Chlamydomonas reinhardtii]
gi|16945126|emb|CAC80065.1| Fe-hydrogenase [Chlamydomonas reinhardtii]
gi|18026270|gb|AAL23572.1| iron-hydrogenase HydA1 [Chlamydomonas reinhardtii]
gi|40736851|emb|CAC83731.1| Fe-hydrogenase [Chlamydomonas reinhardtii]
gi|158277634|gb|EDP03402.1| iron hydrogenase [Chlamydomonas reinhardtii]
Length = 497
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 194/423 (45%), Gaps = 73/423 (17%)
Query: 90 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
K V + ++P R ++AE G++P K+L L+ LG +FDT DLT++E +E
Sbjct: 85 KHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSE 144
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 206
+ R + E+ S+ LPM +S CPGWI EK SY ++PY+SS KSPQ + A
Sbjct: 145 LLHRLTEHLEAHPH-SDEPLPMFTSCCPGWIAMLEK---SYPDLIPYVSSCKSPQMMLAA 200
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K ++ +K G P ++ V++MPC K+ EA R+ F D T R ++D
Sbjct: 201 MVKSYLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDADP---TLR-------QLDH 250
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 326
V+TT E+ ++ + + +N L E D + G L+ G++GG E R A +
Sbjct: 251 VITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLF---GTTGGVMEAALRTAYEL 307
Query: 327 LFGKVIEGHLEFKTIRNSD----------------FREV--------------------- 349
G + L +R D F E+
Sbjct: 308 FTGTPLP-RLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLA 366
Query: 350 --------ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
+ + G L+ A+ G N + ++ K++ + Y FVE+MACP+GC+ GGG
Sbjct: 367 WDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGG 426
Query: 402 QIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
Q P + K + + + E L +NP +R LYD +L +P KA + +H
Sbjct: 427 Q----PRSTDKAITQKRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLH 482
Query: 459 TEY 461
T Y
Sbjct: 483 THY 485
>gi|323702073|ref|ZP_08113741.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|323532955|gb|EGB22826.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
Length = 657
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 173/337 (51%), Gaps = 30/337 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C CI T + S++E + I + K V+ ++P R +L E FG+ + V
Sbjct: 189 CINCGQCIAVCPTGALTSNSSVNEVWAAIRDPRKTVVCQIAPAPRTALGEEFGLGSVDVT 248
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ + L+ +G +FDT + D+T IE NEF+ R + ++ LP+ +S CP
Sbjct: 249 GKIVSALRKIGFDRVFDTVFAADMTTIEESNEFLDRLAKGEK---------LPIFTSCCP 299
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GW+ YAE Q +L IS+ +SPQQ G+ +K CQ+LG +P++++ V++MPC KK
Sbjct: 300 GWVKYAE-QFHPELLDNISTCRSPQQMFGSVLKKKYCQELGIKPEDMFVVSIMPCTAKKY 358
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA R +F + +Y +VD+VLTT E + + + FE L ES D+ +
Sbjct: 359 EAKRPEF-----TTAGSY--------DVDAVLTTVEAAQMFREAGIIFEQLPESDFDEPM 405
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 356
G L+ G++GG E+V R+ L EG ++ + +R ++A G
Sbjct: 406 QQATGSGVLF---GATGGVMESVVRYVTGKLLKT--EGRIDIEFVRGMADTKIATLNVGD 460
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
L A+ G + ++ K+K + + VEVMACP
Sbjct: 461 NKLTLAVVNGLAAAEALIEKIKSGELEVHAVEVMACP 497
>gi|225559785|gb|EEH08067.1| nuclear prelamin A recognition factor-like protein [Ajellomyces
capsulatus G186AR]
Length = 591
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 211/475 (44%), Gaps = 94/475 (19%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVV---SLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
S L DL+DFI+P C+ SL + T KN SK AE V +L C
Sbjct: 1 MSAILSADDLNDFISPGVACIKPIESLPRKTDKN---------SKSHAE-VLNTLDSCAE 50
Query: 62 --------CSGCITSAETVMLEKQSLD---EFLSNINKGKAVIISLSPQSRASLAEHFGI 110
CS +A+ + E + + GK + S+SPQ+RASLA +GI
Sbjct: 51 LRIDELNECS----NAQRLRENDAGFSAEGEQRTTESGGKIFVASVSPQARASLAATYGI 106
Query: 111 SPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 159
S + + FL G + DT+ R + L + +E S+++
Sbjct: 107 SEREAGYLIEQFLSGPEGLRAGGAYGNGFTWVIDTNVMRQVCLELSVSEVTESLNSSKDT 166
Query: 160 DDER-SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGF 218
E P+LSSACPGWICYAEK ++LP+IS +KSPQ G +K + + L
Sbjct: 167 LTETFPAPKRPVLSSACPGWICYAEKT-HPHVLPHISRLKSPQALTGTLVKTVLSKALNI 225
Query: 219 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-------IPEVDSVLTTG 271
+I+H+ +MPC+DKKLEA+R++ + +G + +VD V+T+
Sbjct: 226 SSSQIWHLAIMPCFDKKLEASRQELTDASWQDASSMTQKGHSPTESYSPVRDVDCVITSR 285
Query: 272 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY-------------GVAGSSGGYAET 318
E+L L + ++ L PL + + + AG+SGGY
Sbjct: 286 ELLMLATSRNISLRNLPLQPLPSPFVPLFPDPYFAPFLFPKSSQFVQPSAAGTSGGY--- 342
Query: 319 VFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKV 377
H T + ++ + RNSD E AL G T++K A YGF+N+QN+VRK+
Sbjct: 343 -LYHILTTYQHRNPGSQIQTQRGRNSDVIEYALISPSGATIIKAARYYGFRNIQNLVRKL 401
Query: 378 KMRKC----------------------------DYQFVEVMACPSGCLNGGGQIK 404
K + DY ++EVMACP GC NGGGQI+
Sbjct: 402 KPPRASRLPGANPMIGRRAGGGCAATVNSTSATDYAYIEVMACPGGCTNGGGQIR 456
>gi|449120015|ref|ZP_21756402.1| hydrogenase, Fe-only [Treponema denticola H1-T]
gi|449122412|ref|ZP_21758752.1| hydrogenase, Fe-only [Treponema denticola MYR-T]
gi|448948168|gb|EMB29006.1| hydrogenase, Fe-only [Treponema denticola MYR-T]
gi|448948635|gb|EMB29469.1| hydrogenase, Fe-only [Treponema denticola H1-T]
Length = 596
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 209/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + N K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + ++D VLTT E + +I+ + + L+E+
Sbjct: 355 CVAKKSEIDMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPQTLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|323303332|gb|EGA57128.1| Nar1p [Saccharomyces cerevisiae FostersB]
Length = 491
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 226/482 (46%), Gaps = 83/482 (17%)
Query: 5 FSPTLRIGDLSDFIAPSQNCV----VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCL 60
S L DL+DFI+P+ CV VS K N + ++ Q E V I+L D L
Sbjct: 1 MSALLSESDLNDFISPALACVKPTQVSGGKKDNVNMNGEYEVSTEPDQLEKVSITLSDXL 60
Query: 61 ACSGCITSAETVMLEKQSLDEFLSNINK-----GKAVIISLSPQSRASLAEHFGISPLQV 115
ACSGCITS+E ++L QS FL N K K +++S+SPQ R SLA+++G++
Sbjct: 61 ACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVSPQCRLSLAQYYGLTLEAA 120
Query: 116 FKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
L F K K + T R +++ + + IA KQ + + +R P+LS+
Sbjct: 121 DLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAHKKQKENTGADRK----PLLSAV 176
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPG++ Y EK + P + +VKSPQQ G+ I+ + L + YH+++MPC+DK
Sbjct: 177 CPGFLIYTEKT-KPQLAPMLLNVKSPQQITGSLIRATF-ESLAIARESFYHLSLMPCFDK 234
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--EESPL 292
KLEA+R E+ D +D V+T E++ ++Q ++F++ E++ L
Sbjct: 235 KLEASRP----------ESLXDG------IDCVITPREIVTMLQELNLDFKSFLTEDTSL 278
Query: 293 DKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKTLFGK---VIEGHLEFKTIRNSDF 346
L+ D H + G+ GGYA + G V+EG RNSD
Sbjct: 279 YGRLSPPGWDPRVHWASNLGGTCGGYAYQYVTAVQRLHPGSQMXVLEG-------RNSDI 331
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKV-------------KMRK------------ 381
E L + + + + GF+N+QN+VRK+ +RK
Sbjct: 332 VEYRLLHDDRIIAAASELSGFRNIQNLVRKLTSGSGSERKRNITALRKRRTGPKANSREM 391
Query: 382 ----------CDYQFVEVMACPSGCLNGGGQIKPKPGQ-SPKELIKTLETIYLENVMLAD 430
++EV ACP C+NGGG + + K+L++TL + E + + D
Sbjct: 392 AAATAATADPYHSDYIEVNACPGACMNGGGLLNGEQNSLKRKQLVQTLNKRHGEELAMVD 451
Query: 431 PF 432
P
Sbjct: 452 PL 453
>gi|440785157|ref|ZP_20962107.1| hydrogenase-1 [Clostridium pasteurianum DSM 525]
gi|440218529|gb|ELP57749.1| hydrogenase-1 [Clostridium pasteurianum DSM 525]
Length = 505
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 194/412 (47%), Gaps = 36/412 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C CI + L EK +D + +N K VI++++P RAS+ E F + +
Sbjct: 120 NCLLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVD 179
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E + R + +N PM +S
Sbjct: 180 VTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIE---------NNGPFPMFTSC 230
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ AE +L +SS KSPQQ G K + G P ++ VTVMPC K
Sbjct: 231 CPGWVRQAENYYPE-LLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSK 289
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R +++ RD +D+V+TT E+ +I+ + F LE+S D
Sbjct: 290 KFEADRPQM------EKDGLRD-------IDAVITTRELAKMIKDAKIPFAKLEDSEADP 336
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R A +E +E+K +R + +E +E+
Sbjct: 337 AMGEYSGAGAIFG---ATGGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEI 392
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
A+ G NL ++ + + Y F+EVMAC GC+NGGGQ P K
Sbjct: 393 NNNKY-NVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKV 451
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK + L E++ +N + +Y + +PG +A + +H +Y
Sbjct: 452 DIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKY 503
>gi|150391798|ref|YP_001321847.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
gi|149951660|gb|ABR50188.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
Length = 551
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 181/349 (51%), Gaps = 34/349 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI S L EK+ ++ I + V++ +P RA+L E FG+ P+ +
Sbjct: 191 CIYCGQCIVSCPVAALREKEDIERVWDAIEDPEIHVVVQTAPAVRAALGEEFGL-PIGSR 249
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ LK LG +FDT+ DLT++E +E + R + +N LPM++S
Sbjct: 250 VTGKMVASLKRLGFDQVFDTNFGADLTIMEEGHELLHRLQ---------NNGKLPMITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ Y E +I +S+ KSP Q +GA IK + +K P +I+ V++MPC K
Sbjct: 301 SPGWVRYCEFNYPEFI-ENLSTCKSPHQMLGAIIKSYYAEKQQIDPKKIFVVSIMPCTSK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR + +GL +VD+VLTT E+ +I+ + F LE++ D
Sbjct: 360 KSEAARPEMTV-----------DGLR--DVDAVLTTRELAKMIKQARIEFLKLEDAEFDP 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L G ++ G++GG E R A TL G+ +E +E+ IR + +E + +
Sbjct: 407 ALGEYTGAGAIF---GATGGVMEAALRTLADTLTGQELE-EIEYHNIRGVAGIKEAEINL 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
G+T +K A+ +G ++ +K + +Y F+E+M C GC+ GGGQ
Sbjct: 463 GGQT-IKIAVVHGTAMASKLLEMIKSGEKEYHFIEIMGCSGGCVTGGGQ 510
>gi|295321929|pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In
The Structure Of Hyda(Deltaefg)
gi|295321930|pdb|3LX4|B Chain B, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In
The Structure Of Hyda(Deltaefg)
Length = 457
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 194/423 (45%), Gaps = 73/423 (17%)
Query: 90 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
K V + ++P R ++AE G++P K+L L+ LG +FDT DLT++E +E
Sbjct: 45 KHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSE 104
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 206
+ R + E+ S+ LPM +S CPGWI EK SY ++PY+SS KSPQ + A
Sbjct: 105 LLHRLTEHLEAH-PHSDEPLPMFTSCCPGWIAMLEK---SYPDLIPYVSSCKSPQMMLAA 160
Query: 207 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 266
+K ++ +K G P ++ V++MPC K+ EA R+ F D T R ++D
Sbjct: 161 MVKSYLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDADP---TLR-------QLDH 210
Query: 267 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 326
V+TT E+ ++ + + +N L E D + G L+ G++GG E R A +
Sbjct: 211 VITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLF---GTTGGVMEAALRTAYEL 267
Query: 327 LFGKVIEGHLEFKTIRNSD----------------FREV--------------------- 349
G + L +R D F E+
Sbjct: 268 FTGTPLP-RLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLA 326
Query: 350 --------ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
+ + G L+ A+ G N + ++ K++ + Y FVE+MACP+GC+ GGG
Sbjct: 327 WDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGG 386
Query: 402 QIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
Q P + K + + + E L +NP +R LYD +L +P KA + +H
Sbjct: 387 Q----PRSTDKAITQKRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLH 442
Query: 459 TEY 461
T Y
Sbjct: 443 THY 445
>gi|374105944|gb|AEY94854.1| FABL205Cp [Ashbya gossypii FDAG1]
Length = 451
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 207/431 (48%), Gaps = 78/431 (18%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKA-TFKNPDKPQVSTSSKQQAEPVKISLKDC 59
MS K S + DL+DFI P CV + T D+ Q+A V ISL+DC
Sbjct: 1 MSAKLSES----DLNDFIGPQVACVKPTRTLHTADEGDEALEVGKEPQEATKVSISLQDC 56
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQVFK 117
LAC+GCITS+E ++L +QS FL KA+ +S++PQSR SLA+HFG+S ++ +
Sbjct: 57 LACAGCITSSEEILLSRQSHGVFLEAWRSLAPKALAVSVAPQSRLSLAQHFGLSVAELDQ 116
Query: 118 KLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
L+ L S G K + T R+L++ + + R +Q + P+L S CP
Sbjct: 117 CLSGVLGSYFGAKYVVGTQLGRELSVQQTNARLVERKQQGVQG---------PLLCSVCP 167
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
G++ YAEK ++PY+ VKSPQQ GA + H IYH+++MPC+DKKL
Sbjct: 168 GFVLYAEKT-KPGLVPYMLDVKSPQQITGALL--HAADP------NIYHLSLMPCFDKKL 218
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE---VLDLIQLKAVNFEALEESPLD 293
EAARED EVD VLT E +LD +QL +F A P+
Sbjct: 219 EAAREDCAR-----------------EVDCVLTPREFVTLLDELQLDLHSF-AGAAVPIA 260
Query: 294 KMLTNVDDE--GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 351
++ D SSGGYA H + G I + RN+D E L
Sbjct: 261 QLTPPGWDPRVSWCSSAGSSSGGYAYQYILHMQRLHPGSTIAT----QAGRNADLLEHRL 316
Query: 352 EVEGKTLLKFA-LCYGFQNLQNIVRK------------VKMR------------KCDYQF 386
LL A YGF+N+QN+VRK V+ R C+ F
Sbjct: 317 LAPSGVLLASAGELYGFRNIQNLVRKLLSPATKRSAKVVRRRLPQASPAPPATDPCNADF 376
Query: 387 VEVMACPSGCL 397
+EVMACPSGC+
Sbjct: 377 IEVMACPSGCI 387
>gi|261367572|ref|ZP_05980455.1| periplasmic [Fe] hydrogenase, large subunit [Subdoligranulum
variabile DSM 15176]
gi|282570359|gb|EFB75894.1| hydrogenase, Fe-only [Subdoligranulum variabile DSM 15176]
Length = 585
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 209/424 (49%), Gaps = 46/424 (10%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGI 110
+I DC+ C CIT T L +++ + F + + K ++ ++P R + E G+
Sbjct: 185 RIKESDCVLCGQCITHCPTGALRERNDTQRAFDAIADPEKITVVQIAPAVRTAWGETLGL 244
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+P Q ++ L+ LG +FDTS S DLT++E EF+ RY+ + D LP
Sbjct: 245 TPEQATVHRMAACLRRLGFDYVFDTSFSADLTIMEEGTEFLHRYQAGETRD-------LP 297
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ Y + + +S+ KSPQQ GA K++ QKLG PD+IY V++M
Sbjct: 298 MFTSCCPGWVRYLKSHYPQWT-DRLSTAKSPQQMFGAVTKNYFAQKLGVSPDKIYCVSIM 356
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E E +D VD VLTT E++ +I+ + ++ EAL E
Sbjct: 357 PCIAKKQECDLPTM------HTEAGKD-------VDLVLTTRELVRMIRAERLHPEALPE 403
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
D L G ++GV +GG E R A + GK + F +R F +
Sbjct: 404 EAFDSPLGTYTGAGVIFGV---TGGVMEAALRSAYYLVNGKNPKAE-AFTAVRGHAFAQG 459
Query: 350 ALEVE----GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI-- 403
E E +++ A+ G N +++ + K Y FVEVMACP GC GGGQ
Sbjct: 460 WTEAEFDLGDGAIVRTAVVNGLGNTHHLLEAIAAGKVHYDFVEVMACPGGCAGGGGQPQN 519
Query: 404 ---KPKPGQSPKEL--IKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
+ + + K L + T+ + +NP +++LY E L+ PGSE+A++ +H
Sbjct: 520 LDDEERAAERGKRLYALDQCSTLRFSH-------ENPEIQTLYREALDAPGSERAEEWLH 572
Query: 459 TEYH 462
T++H
Sbjct: 573 TDHH 576
>gi|308069432|ref|YP_003871037.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus polymyxa E681]
gi|305858711|gb|ADM70499.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus polymyxa E681]
Length = 501
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 188/391 (48%), Gaps = 41/391 (10%)
Query: 85 NINK--------GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 134
N+NK G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 115 NLNKVTDMMTKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 173
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 174 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 223
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSP Q +GA IK + Q P IY V +MPC K+ E R + + + Y
Sbjct: 224 SSCKSPMQMLGALIKSYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------ESDGY 277
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 278 RD-------VDEVLTTRELAYWIKQRGIDFANLPDEEFDSPLGQYSGAGSIFGV---TGG 327
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 374
E R + L + + L+ +R + VA GK LK A+ G Q+ ++
Sbjct: 328 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGKLQLKVAVVAGLQHAYQLL 386
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 431
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 387 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQRIEAYRARKSSIYGHDAAHQVRKS 446
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+NP + LYDE+L +P + +HT +
Sbjct: 447 HENPHIIKLYDEFLGEPLGHVSHHLLHTTFQ 477
>gi|253576868|ref|ZP_04854193.1| hydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843735|gb|EES71758.1| hydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 582
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 216/418 (51%), Gaps = 45/418 (10%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--Q 114
C+ C CI + L E++++ + I + K V++ +P R +L E FG+ P+ +
Sbjct: 189 CVNCGQCIMACPVGALQERENVGDVWQAIADPHKFVVVQTAPAVRVALGEEFGM-PIGTR 247
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E E + R + +LP+++S
Sbjct: 248 VTGKMVAALRRLGFNKVFDTDFAADLTIMEEGTELVHRLA---------TGENLPLMTSC 298
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + E ++ +SS KSP + GA IK + Q +G P I V++MPC K
Sbjct: 299 CPGWVKFVE-HFFPDMMENLSSCKSPHEMEGAMIKSYFAQTMGIDPGNIVVVSIMPCTAK 357
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ + +P+VD VLTT E+ +I+ ++F L+ D
Sbjct: 358 KFEAQREELAHE-------------SLPDVDYVLTTRELARMIKEAGIDFVNLKGETFDN 404
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
G ++G ++GG AE R + + G+ +E +E+ +R D +E +E+
Sbjct: 405 PFGEASGAGVIFG---ATGGVAEAALRTVFELVAGEELE-TVEYTAVRGMDGMKETTVEL 460
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+++ A+ +G N + ++ ++ + Y+F+EVMACP GC+ GGGQ P G S ++
Sbjct: 461 PDGRMIRTAVVHGLGNARKLMSMIQSGQRQYEFIEVMACPGGCICGGGQ--PIVGASLRD 518
Query: 414 LIK-TLET-------IYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ TL+ IY E+ + KNP ++ +Y E+LE+P S K+ K++HT Y
Sbjct: 519 TLRDTLDVKAARAKAIYDEDEASTVRKSHKNPYIQQIYREFLEKPNSHKSHKYLHTHY 576
>gi|390453547|ref|ZP_10239075.1| NADH:ubiquinone oxidoreductase subunit [Paenibacillus peoriae KCTC
3763]
Length = 446
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 189/391 (48%), Gaps = 41/391 (10%)
Query: 85 NINK--------GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 134
N+NK G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 60 NLNKVTDMMTKPGQLRIVQCAPSIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 118
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 119 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 168
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSP Q +GA +K + Q +P IY V +MPC K+ E R + + + Y
Sbjct: 169 SSCKSPMQILGALVKTYGAQLDEVKPANIYSVAIMPCTCKQFECDRPEM------ESDGY 222
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 223 RD-------VDEVLTTRELAYWIKQRGIDFMNLPDEEFDSPLGQYSGAGTIFGV---TGG 272
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 374
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 273 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 331
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 431
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 332 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAASQVRKS 391
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+NP + LYDE+L +P + +HT +
Sbjct: 392 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFQ 422
>gi|383791573|ref|YP_005476147.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
gi|383108107|gb|AFG38440.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
Length = 582
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 203/424 (47%), Gaps = 41/424 (9%)
Query: 49 AEPVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAE 106
A V+++ C+ C C + E+ L+ I + V + ++P R +L E
Sbjct: 181 AAGVQLNDSPCIKCGQCSAHCPVGAIYERDDTKSLLNAIRDPEMHVAVQIAPAVRVALGE 240
Query: 107 HFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
FG+ P ++ K+ L+ LGV ++FDT+ + DLT++E EF+ R E
Sbjct: 241 AFGLEPGEITTGKIYAALRRLGVDAVFDTNFAADLTIMEEGTEFVERLTTGGE------- 293
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225
LP+++S CP W+ Y EK I P S+ KSP G K + + + I+
Sbjct: 294 --LPLITSCCPSWVDYMEKYYDDMI-PNFSTAKSPMMMQGVLTKTYYADQKKLGRERIFS 350
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
+MPC KK E R+ +F SQ +VD VLTT E+ L++ ++F
Sbjct: 351 AAIMPCTSKKYEITRDVNMFASGSQ------------DVDCVLTTRELARLLKQSGIDFL 398
Query: 286 ALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 345
+L + D + G ++ G++GG E R A + G+ +G + F+ +R D
Sbjct: 399 SLPDEEADSPIGAYTGAGTIF---GATGGVMEAALRTAYNLVTGEEHKG-ITFEAVRGMD 454
Query: 346 -FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-----YQFVEVMACPSGCLNG 399
R + + GK+ ++ A+ +G N+++++ ++K K + Y F+EVMAC GC+ G
Sbjct: 455 GIRSAEIAINGKS-IRVAIAHGIANVRDLLEEIKQAKAEGKEPPYHFIEVMACRGGCIAG 513
Query: 400 GGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
GGQ G K + IY E + +NP ++ +Y +LE+P S+K+ +
Sbjct: 514 GGQ---PYGTQDDVREKRIAGIYQDDEKQTMRCSHQNPFIQEVYKNFLEKPCSKKSHDLL 570
Query: 458 HTEY 461
HT Y
Sbjct: 571 HTHY 574
>gi|440785158|ref|ZP_20962108.1| Hydrogene dehydrogenase [Clostridium pasteurianum DSM 525]
gi|130069|sp|P29166.1|PHF1_CLOPA RecName: Full=Iron hydrogenase 1; AltName: Full=CpI; AltName:
Full=Fe-only hydrogenase; AltName: Full=[Fe] hydrogenase
gi|4139441|pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
gi|6730137|pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
gi|6730138|pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
gi|185177961|pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
gi|144836|gb|AAA23248.1| hydrogenase I [Clostridium pasteurianum]
gi|440218530|gb|ELP57750.1| Hydrogene dehydrogenase [Clostridium pasteurianum DSM 525]
Length = 574
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 194/412 (47%), Gaps = 36/412 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C CI + L EK +D + +N K VI++++P RAS+ E F + +
Sbjct: 189 NCLLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E + R + +N PM +S
Sbjct: 249 VTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIE---------NNGPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ AE +L +SS KSPQQ G K + G P ++ VTVMPC K
Sbjct: 300 CPGWVRQAENYYPE-LLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R +++ RD +D+V+TT E+ +I+ + F LE+S D
Sbjct: 359 KFEADRPQM------EKDGLRD-------IDAVITTRELAKMIKDAKIPFAKLEDSEADP 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R A +E +E+K +R + +E +E+
Sbjct: 406 AMGEYSGAGAIFG---ATGGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEI 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
A+ G NL ++ + + Y F+EVMAC GC+NGGGQ P K
Sbjct: 462 NNNKY-NVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKV 520
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK + L E++ +N + +Y + +PG +A + +H +Y
Sbjct: 521 DIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKY 572
>gi|333923422|ref|YP_004497002.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748983|gb|AEF94090.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 657
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 172/337 (51%), Gaps = 30/337 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C CI T + S+ E + I + K V+ ++P R +L E FG+ + V
Sbjct: 189 CINCGQCIAVCPTGALTSNSSVSEVWAAIRDPRKTVVCQIAPAPRTALGEEFGLGSVDVT 248
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ + L+ +G +FDT + D+T IE NEF+ R + ++ LP+ +S CP
Sbjct: 249 GKIVSALRKIGFDRVFDTVFAADMTTIEESNEFLDRLAKGEK---------LPIFTSCCP 299
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GW+ YAE Q +L IS+ +SPQQ G+ +K CQ+LG +P++++ V++MPC KK
Sbjct: 300 GWVKYAE-QFHPELLDNISTCRSPQQMFGSVLKKKYCQELGIKPEDMFVVSIMPCTAKKY 358
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA R +F + +Y +VD+VLTT E + + + FE L ES D+ +
Sbjct: 359 EAKRPEF-----TTAGSY--------DVDAVLTTVEAAQMFREAGIIFEQLPESDFDEPM 405
Query: 297 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 356
G L+ G++GG E+V R+ L EG ++ + +R ++A G
Sbjct: 406 QQATGSGVLF---GATGGVMESVVRYVTGKLLKT--EGRIDIEFVRGMADTKIATLNVGD 460
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
L A+ G + ++ K+K + + VEVMACP
Sbjct: 461 NKLTLAVVNGLAAAEALIEKIKSGELEVHAVEVMACP 497
>gi|359414272|ref|ZP_09206737.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
gi|357173156|gb|EHJ01331.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
Length = 566
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 200/414 (48%), Gaps = 39/414 (9%)
Query: 53 KISLKDCLACSGCITSAET--VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI 110
K+S +C+ C C T T ++++ + + + N + V+ ++P R +L E FG+
Sbjct: 183 KLSETNCVNCGQCATVCPTGAIIIKSDVKNVWKAIFNPKQRVVAQVAPAVRVALGEEFGM 242
Query: 111 S-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
V K+ ++ +G I+DTS S DLT+IE EF+ + E ++ LP
Sbjct: 243 KFGKNVMGKIVAAMRRVGFDDIYDTSLSADLTVIEESKEFLEKL--------EIGDNKLP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+ +S CP W+ Y E + +LPY+SS KSP Q G+ IK + +K E V VM
Sbjct: 295 LFTSCCPAWVRYVETK-HPELLPYVSSCKSPMQMFGSVIKEYFKEKDVEEGKETISVAVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA+R++F+ I +VD V+TT E+ +I+ + F+ +E
Sbjct: 354 PCTAKKAEASRDEFIRN-------------GIQDVDYVITTTELSAMIKEIGIKFDEMEA 400
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
LD + G ++GV +GG E V R+ + +EF +R + +V
Sbjct: 401 ESLDAPFSLYSGAGAIFGV---TGGVTEAVIRNVVSDKTSSALN-EIEFIGVRGMEGIKV 456
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
G L+ + G N++ ++ KV + + F+EVMACP GC+ G GQ P
Sbjct: 457 CELSVGDKNLRIGIASGLNNVETLIEKVGSGEEKFDFIEVMACPGGCICGAGQ----PFI 512
Query: 410 SPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ I+ +Y + + +NP+V+SLY L E++K+ +H Y
Sbjct: 513 LGEDKIQRARGLYKVDKVAQIKRSEENPIVKSLYKGLLR----ERSKELLHVHY 562
>gi|386347238|ref|YP_006045487.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
gi|339412205|gb|AEJ61770.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
Length = 583
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 214/421 (50%), Gaps = 42/421 (9%)
Query: 54 ISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFG 109
I+L D C+ C C + EK + I + ++ ++P R ++ E FG
Sbjct: 184 IALNDSPCIKCGQCSAHCPVGAIYEKDDTRKVWEAIMDPEIHTVVQIAPAVRVAIGEAFG 243
Query: 110 ISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P + K L+ LG +IFDT+ + DLT++E +EF+ R+ + +
Sbjct: 244 YEPGTLLTGKTYAALRRLGFDAIFDTNFAADLTIMEEASEFVERFAHGK--------GPI 295
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P++++ CP W+ Y EK ++P+ SS KSPQ + A +K + QK G P +I+ V+V
Sbjct: 296 PLITTCCPSWVDYLEKYYPE-MIPHFSSAKSPQMMLAAMVKTYYAQKKGIDPSKIFMVSV 354
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK E R++ ++ Y+D+ D+ +TT E+ +I+ ++F L
Sbjct: 355 MPCTSKKYEIERDENMYS-----SGYKDQ-------DASITTRELARMIKSAGIDFHNLP 402
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+ D+ L G ++GV +GG E R + GK +E +E+ IR D +
Sbjct: 403 DEEADQPLGIYTGAGTIFGV---TGGVMEAAVRTVYYFITGKEME-KVEYTPIRGLDGVK 458
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKM-----RKCDYQFVEVMACPSGCLNGGGQ 402
E L+++G T ++ A+ + N+Q ++ +VK ++ Y F+EVMAC GC+ GGGQ
Sbjct: 459 EATLDIDG-TQVRIAVAHSISNVQYVLDRVKQALQEGKEPPYHFIEVMACRGGCVGGGGQ 517
Query: 403 IKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
G + + K IY E + +NP ++ LY+E+LE+P SEKA K++HT
Sbjct: 518 PY---GATDEIRAKRAAGIYTDDERSVYRCSHQNPAIKQLYEEFLEKPLSEKAHKYLHTH 574
Query: 461 Y 461
Y
Sbjct: 575 Y 575
>gi|404372751|ref|ZP_10978035.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA]
gi|226914125|gb|EEH99326.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA]
Length = 575
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 198/413 (47%), Gaps = 37/413 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ + L EK +D + ++ K VI++++P R ++ E F + +
Sbjct: 189 NCLLCGQCVAACPVDALSEKSHMDRVKDALADQEKHVIVAMAPSVRTAMGELFKMGYGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ LG IFD + D+T++E E I R K + PM +S
Sbjct: 249 VTGKVYTALRELGFDKIFDINFGADMTIMEEATELIQRIK---------TGGPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ E ++I ++SS KSPQQ G K + Q P ++ VT+MPC K
Sbjct: 300 CPAWVRQVENYYPNFI-EHLSSAKSPQQIFGTASKTYYPQVADVDPKNVFTVTIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + E I +D+V+TT E+ +I+ ++F LE+S D
Sbjct: 359 KYEADRPEM-------------ENNGIRNIDAVITTRELAKMIKDAKIDFAKLEDSEADP 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R A + GK +E ++E++ +R + +E +E+
Sbjct: 406 AMGEYTGAGAIFG---ATGGVMEAALRTAKDFVEGKDLE-NIEYEQVRGLAGIKEATVEI 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G A+ G +L ++ K+ + Y F+EVMACP GC+NGGGQ
Sbjct: 462 GGDNY-NVAVINGASSLFEFMKSGKVNEKKYHFIEVMACPGGCVNGGGQPHVNASDRLTM 520
Query: 414 LIKTLETIYLEN-----VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+++ L N + +N + +Y+ ++ +PG KA + +H +Y
Sbjct: 521 DIRSVRASVLYNQDKNVLKKRKSHENGALNKMYETFMGEPGHGKAHELLHIKY 573
>gi|158258984|dbj|BAF82036.1| Fe-hydrogenase [Pseudotrichonympha grassii]
Length = 467
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 200/422 (47%), Gaps = 44/422 (10%)
Query: 52 VKISLKDCLACSGCIT----SAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEH 107
V++S +C+ C C A T + E L E L N KGK + +P R +L+E
Sbjct: 74 VELSKTNCIGCGQCTLVCRPGAITEVDEIPILLESLKN-KKGKVFVAQTAPAIRVNLSEI 132
Query: 108 FGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNS 166
FG V + KL LK +G +FDTS + DLT+ E EF+ R K+
Sbjct: 133 FGFPVGTVTEGKLVASLKKIGFDYVFDTSFAADLTIAEEATEFVERVKK---------GG 183
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHV 226
PM +S CP W+ Y EK ++P +SS KSP +GA IK + P I V
Sbjct: 184 VFPMFTSCCPAWVNYVEKS-NPQLIPNLSSCKSPMSMLGALIKTDFAKIKKIDPRSIVSV 242
Query: 227 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA 286
++MPC KK EA R + DE + D V++T E+ LI+ K ++++
Sbjct: 243 SIMPCTAKKDEARRSEL-----------SDESGQ--NTDIVISTRELARLIKSKKIDYKK 289
Query: 287 LEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD- 345
+ + DK+ G ++G SSGG E R A + L G + L+ IR
Sbjct: 290 IPDQKYDKLYAEYTGGGVIFG---SSGGVMEAALRSAYQILTGNPLS-QLDILPIRAGKD 345
Query: 346 ---FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK---CDYQFVEVMACPSGCLNG 399
F EV + G T+ K A+C G N + +V K++ + D +FVEVMACP GC+NG
Sbjct: 346 GIKFSEV--HINGSTV-KVAVCQGVANAKKLVEKIQKKDPSVADLKFVEVMACPGGCVNG 402
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
GG K K ++ ++ L + N+ N ++ LY L+ GS +A + +HT
Sbjct: 403 GGSSKAKNAKAVQDRAGALYKLD-SNLKQRVSLDNSELKELYRRSLKGFGSHEAHEILHT 461
Query: 460 EY 461
+
Sbjct: 462 HF 463
>gi|225410187|ref|ZP_03761376.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme
DSM 15981]
gi|225042291|gb|EEG52537.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme
DSM 15981]
Length = 683
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 216/410 (52%), Gaps = 28/410 (6%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C + + + E + + E +S+ +K VI+S SP RA+L E FG+ V
Sbjct: 68 NCGQCANVCPVGSISEVKEYRQVAEAISDPDK--IVIMSTSPSVRAALGEEFGMGSAFVQ 125
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
K+ + L++LG + DT+ + DLT++E +E I R + N LP +S CP
Sbjct: 126 GKMVSLLRALGADYVLDTNFAADLTILEEASELIERVT--------KGNKPLPQFTSCCP 177
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
W+ +AE +L +ISS KSP G TIK + +K+G P I +V V PC KK
Sbjct: 178 AWVKFAEIYYPD-MLDHISSAKSPIGMQGPTIKTYFAKKMGIDPRTIVNVAVTPCTAKKY 236
Query: 237 EAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE+ S Y G+E + ++D V+TT E+ + V+FEALE+ D++
Sbjct: 237 EIRREEM-----SAAGKYL--GIEDMRDMDYVITTRELAQWAREAEVDFEALEDGTYDRL 289
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++G ++GG E R A + + G K + + + +R + +E +L+V
Sbjct: 290 MGEGSGAGVIFG---NTGGVMEAALRTAYEYITGEKAPQVLYQLEPVRGLEAVKEASLQV 346
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T+ A+ +G N+++ +R++K Y FVEVM CP GC+ GGGQ K K +
Sbjct: 347 GGLTV-NVAVIFGTANVRSFIRRMKEGGKQYHFVEVMTCPGGCIGGGGQPKDKEFEGDAL 405
Query: 414 LIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +E++Y + + + +N ++ LY E+ QP SE A++ +HT Y
Sbjct: 406 RARRIESLYGRDRSMTVRASHENEEIKELYHEFYGQPLSELAEQMLHTGY 455
>gi|13311187|emb|CAC34419.1| Fe-hydrogenase [Acutodesmus obliquus]
Length = 449
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 199/406 (49%), Gaps = 41/406 (10%)
Query: 76 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDT 134
+Q+LDE + K +I ++P R ++AE G++P V ++ T L+ LG +FDT
Sbjct: 56 QQTLDELAKPKEQRKVMIAQIAPAVRVAIAETMGLNPGDVTVGQMVTGLRMLGFDYVFDT 115
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
DLT++E E R + E + LPM +S CPGW+ EK ++PY+
Sbjct: 116 LFGADLTIMEEGTELRHRLQDHLEQHPNKE-EPLPMFTSCCPGWVAMVEKS-NPELIPYL 173
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSPQ +GA IK++ + G +P++I +V+VMPC K+ EA RE F
Sbjct: 174 SSCKSPQMMLGAVIKNYFAAEAGAKPEDICNVSVMPCVRKQGEADREWF----------- 222
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
G VD V+TT E+ + + + L+ESP D + G L+ G++GG
Sbjct: 223 NTTGAGGANVDHVMTTAELGKIFVERGIKLNDLQESPFDNPVGEGSGGGVLF---GTTGG 279
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRN----------------SDFREVALEVEGKTL 358
E R + + K ++ + F+ +R S F+ A
Sbjct: 280 VMEAALRTVYEVVTQKPLD-RIVFEDVRGLEGIKESTLHLTPGPTSPFKAFAGADGTGIT 338
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 418
L A+ G N + +++++ + Y F+EVMACP GC+ GGGQ P + K++++
Sbjct: 339 LNIAVANGLGNAKKLIKQLAAGESKYDFIEVMACPGGCIGGGGQ----PRSADKQILQKR 394
Query: 419 ETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ E ++ +NPL+ +LY+++L +P KA + +HT Y
Sbjct: 395 QAAMYDLDERAVIRRSHENPLIGALYEKFLGEPNGHKAHELLHTHY 440
>gi|389843333|ref|YP_006345413.1| hydrogenase, Fe-only [Mesotoga prima MesG1.Ag.4.2]
gi|387858079|gb|AFK06170.1| hydrogenase, Fe-only [Mesotoga prima MesG1.Ag.4.2]
Length = 586
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/421 (30%), Positives = 213/421 (50%), Gaps = 37/421 (8%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGIS 111
I+ DC+ C C + E+ E ++ + K V+I+ +P R +L+E FG
Sbjct: 184 IAATDCINCGQCSAVCPVGAITERMEFREVVAELRKHDKVLIAQTAPSVRVALSEEFGEL 243
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ L+ LG +FDT+ + DLT++E +E + R K+ PM
Sbjct: 244 PGTVSTGKMVAALRKLGFDYVFDTNFTADLTIMEEGSELLERVKE---------GGKFPM 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ EK + +S+ KSPQ+ + A +K + +K+G RP++IY V++MP
Sbjct: 295 FTSCCPGWVNMMEKLYPEFT-ENLSTAKSPQEMMSALVKTYFAEKIGKRPEDIYLVSIMP 353
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R+ + D+VL T E+ LI++ + FE+LEE
Sbjct: 354 CTAKKDEKGRDTLTVRGTRS-------------TDAVLVTRELGKLIKMHKIPFESLEEE 400
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D L ++ G++GG E R A + G+ + L+F R D +E
Sbjct: 401 EFDSPLGISTGAAVIF---GATGGVMEAALRTAYELHTGEELP-RLDFDFARGFDGVKEA 456
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++G T ++ A+ +G N+ ++ K++ + Y FVEVMACP GC+ GGGQ PK Q
Sbjct: 457 EIDMKG-TKVRVAVVHGGSNVVKLMDKIRSGEAFYHFVEVMACPGGCIGGGGQ--PKSSQ 513
Query: 410 SPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
P L K +E IY ++ ++ +NP + LY+E+L +P + + +HT Y KS
Sbjct: 514 -PGYLQKRMEAIYNIDKSSVIRKSHENPAIAKLYEEYLGKPLGHLSHELLHTHYKDNKKS 572
Query: 468 I 468
+
Sbjct: 573 V 573
>gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila
LSv54]
gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea
psychrophila LSv54]
Length = 471
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 35/377 (9%)
Query: 91 AVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
+ + +P R +L E FG+ P KL L +LG ++DT+ + DLT++E E
Sbjct: 118 STFVQCAPAVRVALGEEFGM-PYGSLTPGKLAAALHALGFTKVYDTNFAADLTIMEEGAE 176
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
IAR LPM +S CPGW+ + E Q +L ++SS KSPQQ G
Sbjct: 177 LIARIG---------GQGKLPMFTSCCPGWVKFVEDQYPD-LLEHLSSCKSPQQMAGTLF 226
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K + Q+ G P++I+ + VMPC KK E R + YRD VD V+
Sbjct: 227 KTYGAQEAGIAPEKIFSLAVMPCTCKKFECERPEMA------ASGYRD-------VDLVI 273
Query: 269 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 328
TT E+ L++ ++F AL ++ D L G+++G ++GG E R A + L
Sbjct: 274 TTRELAQLLKHVGIDFLALADAEFDNPLGCYSGAGNIFG---TTGGVMEAALRSACEVLT 330
Query: 329 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 387
GK + +E +R + R ++ EG L + A+ G ++ ++ +V+ + D+QF+
Sbjct: 331 GKPLP-SVELDYVRGGEGVRFATVQHEGVEL-RVAIAAGLADIAPLLEQVRAGEADFQFM 388
Query: 388 EVMACPSGCLNGGGQIKP-KPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEW 444
EVM CP GC++GGGQ K P Q + +Y + L +NP ++ LY+++
Sbjct: 389 EVMCCPMGCVSGGGQPKTLLPSQVLEAHAGRRAGLYSHDKALPVRKSHENPEIKKLYEKF 448
Query: 445 LEQPGSEKAKKHVHTEY 461
L +P +A + +HT++
Sbjct: 449 LGEPLGHQAHELLHTDH 465
>gi|436842483|ref|YP_007326861.1| Periplasmic [Fe] hydrogenase large subunit [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432171389|emb|CCO24762.1| Periplasmic [Fe] hydrogenase large subunit [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 459
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 214/457 (46%), Gaps = 65/457 (14%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSA----------ETVMLEK-------------- 76
V S Q EP I C+ C CI + +T + EK
Sbjct: 27 VEAISGVQGEPHSIDHARCVICGQCIQTCSAYGSILEEPDTPLAEKLHERGMFRSVEEPL 86
Query: 77 ------QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVK 129
+ E + + K ++ +P R ++ E FG+ + K+ L+ LG
Sbjct: 87 FAAYCTGNAPEVMKELRSDKLSLVQCAPAVRTAIGEDFGMPAGSLTPGKMAAALRRLGFD 146
Query: 130 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 189
++DT+ + DLT++E NE ++R + +LPM +S CP W+ + E
Sbjct: 147 RVYDTNFAADLTIMEEGNELLSRISNGE---------TLPMFTSCCPAWVRFMELNYPD- 196
Query: 190 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 249
+L ++SS KSPQQ GA K + +P+EI+ V+VMPC KK E++R +
Sbjct: 197 LLGHLSSCKSPQQMSGALFKTYGADIDNRKPEEIFSVSVMPCTCKKYESSRPEM------ 250
Query: 250 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 309
++ GL +VD+V+TT E+ +I+ ++F L D+ L G+++GV
Sbjct: 251 -----KNNGLR--DVDAVITTRELGYMIKEAGIDFTTLPAEDFDRPLGTYTGAGNIFGV- 302
Query: 310 GSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGF 367
+GG E R A + + GK V E L F +R + R ++++ G T + A+ G
Sbjct: 303 --TGGVMEAALRTACELVTGKPVPETDLIF--VRGEAGMRTASMDMNGTT-FRVAVVAGL 357
Query: 368 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLE 424
N ++ KV+ K + FVEVM CPSGC++GGGQ K P ++ K + +
Sbjct: 358 TNAIALLEKVRTGKAEVDFVEVMCCPSGCISGGGQPKVLLPADRENVYRCRKQSMYSHDQ 417
Query: 425 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
N+ + +NP V+ +Y ++L +P + K +HT Y
Sbjct: 418 NIKIRKSHENPDVQKVYADFLGEPLGHTSHKLLHTSY 454
>gi|259511476|sp|A5DKC0.2|NAR1_PICGU RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|190347367|gb|EDK39623.2| hypothetical protein PGUG_03721 [Meyerozyma guilliermondii ATCC
6260]
Length = 531
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 149/516 (28%), Positives = 221/516 (42%), Gaps = 142/516 (27%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAE-------------- 50
S L DL+DFI+P C+ KP V+ + Q+A
Sbjct: 1 MSALLSADDLNDFISPGIACI------------KPTVTENRSQEASEYGEVEIQIDENGK 48
Query: 51 ---------------PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK----GKA 91
P +ISL DCLACSGCITSAE +++ + S +E + + + K
Sbjct: 49 PLEISKIDGATKNLSPAQISLADCLACSGCITSAEEILVAQHSHNELIKALKEKKTNNKI 108
Query: 92 VIISLSPQSRASLAEHFGISPLQVFKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFI 150
+ S+S Q+RASLA + + + + L L +G + T R L+LI I
Sbjct: 109 FVASISHQARASLATAYYMKVSDIDRLLVDLLVNQMGFTYVVGTGLGRKLSLINESQSVI 168
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R + + P+LSS CPGW+ YAEK ++L IS KSPQQ G +K
Sbjct: 169 ERKEHGFQG---------PILSSICPGWVLYAEKT-HPHVLSRISDTKSPQQITGCLLKS 218
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+L D+IYH+++MPC+DKKLE+AR + +D L +VD VLT
Sbjct: 219 LTAHQLEVERDQIYHLSIMPCFDKKLESARPE------------QDPSLVSNDVDCVLTP 266
Query: 271 GEVLDLI-QLK---AVNFEALEESPLDKMLTNVDDEGHLY-GVAGSSGGYAETVFRHAAK 325
E++ L+ + K ++ F+AL S LT+ LY A ++ Y E + +
Sbjct: 267 KELVTLLDECKDKFSLTFDALSHS--SGSLTD------LYQSCAPANWPYVELSWSSDSG 318
Query: 326 TL-------FGKVIEGH---------------LEFKTIRNSDFREVALEVEGKTLLKFAL 363
+ + ++++ H LE RN D E+ L + A+
Sbjct: 319 SSSGGYGYNYLQLLQSHLCLRDPQQYQPQNFRLESVAGRNKDIYELRLVYNDNQVASSAI 378
Query: 364 CYGFQNLQNIVRKVK-------------------------------------MRKCDYQF 386
GF+N+QN+VRK+K KCDY
Sbjct: 379 VNGFRNIQNLVRKLKPTSSTTTTKTNPLVARRKARLSSKRSESGAQDVQQADASKCDY-- 436
Query: 387 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 422
VE+MACP+GC+NGGGQI + K + T Y
Sbjct: 437 VEIMACPNGCINGGGQINSPTDEDQKLWVSKTLTRY 472
>gi|358338161|dbj|GAA31803.2| cytosolic Fe-S cluster assembly factor NARFL [Clonorchis sinensis]
Length = 498
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 198/424 (46%), Gaps = 121/424 (28%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFKK---------------------LTTFLKSLGV 128
+ +++S+SPQS SLA + + +++ L +++GV
Sbjct: 26 RTIVVSISPQSIVSLASYLNKNDAGRYEEWKAKLPVDLECLPEAECIERFLVQQFRAMGV 85
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
+ +T+ RD+ L E+ EFI R+K +D E + + LP+ ACPGWICYAEK
Sbjct: 86 SLVLNTTWFRDIALSESAAEFIRRFK---AADAEPTGAHLPVFCGACPGWICYAEKTHSG 142
Query: 189 ---------------YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
ILP++S V+SPQQ G+ +K Q+ R +YHVT+MPC+D
Sbjct: 143 GETSVETTKFVNQSFSILPHLSVVRSPQQIAGSLLK----QRSESRQSSLYHVTIMPCFD 198
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE--ESP 291
KKLEA+R +F S D+ +P+VD VL T E+L++ L + E L + P
Sbjct: 199 KKLEASRVEFASPAHSAR---HDDPEMVPDVDLVLATNELLEI--LDTIGDEGLRSMKGP 253
Query: 292 LDK-------MLTNVDDEGH------------LYGVAGS-SGGYAETVFRHAAKTLFG-- 329
+D + +V++ H +Y AGS SGGYA +VF AA+ LF
Sbjct: 254 VDVDCDLWQILKGSVNEAVHSHMPEPTPLRTPMYRHAGSGSGGYAVSVFAQAAEELFSIH 313
Query: 330 -----KVIEGHLEFKTIRNSDFREVALEVEGK---------------------------- 356
+ + +T++N D +E+ L +
Sbjct: 314 LPAEDPTSDDRVLTRTLQNQDLQELLLFASSQDCATAKHMLSNLPSSRTPYRSLKSVKPP 373
Query: 357 -TLLKFALCYGFQNLQNIVRKV----KMRKC-----------DYQFVEVMACPSGCLNGG 400
LL FA+ GF+N+QN+V+ + K R+C + +VEVMACP GC+NGG
Sbjct: 374 ACLLAFAVANGFRNIQNLVQSLKNVYKARQCMENQPTRSTCYPFDYVEVMACPGGCINGG 433
Query: 401 GQIK 404
GQ+K
Sbjct: 434 GQLK 437
>gi|153953475|ref|YP_001394240.1| Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
Length = 457
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 208/462 (45%), Gaps = 74/462 (16%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCI--------------TSAETVMLEKQSLD------ 80
V + EP I ++ C+ C CI T + ++ LD
Sbjct: 21 VDAIGGNKGEPQAIDMEKCIMCGQCIQICKGYYSIYDDVATPVSKKLFDRGLLDNVDEPL 80
Query: 81 -------------EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKS 125
E L N + K I+ +P R ++ E FG+ P K+ L+
Sbjct: 81 FAAYSTSRIKNVKEILRNTDVFK--IVQCAPAVRVAIGEEFGL-PFGTLSEGKMAVVLRK 137
Query: 126 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 185
+G ++DT+ DLT++E +E + R + +LPM +S CP W+ Y E Q
Sbjct: 138 IGFDRVYDTNFGADLTIMEEGSELLDRITKG---------GTLPMFTSCCPAWVKYME-Q 187
Query: 186 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 245
+LP++SS KSPQQ GA K + + P +IY+V VMPC K+ E+ RE+
Sbjct: 188 TYPELLPHLSSCKSPQQMAGAIFKSYGAEINKVNPAKIYNVAVMPCTCKEFESEREEMSC 247
Query: 246 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 305
E VD V+TT E+ LI+ ++F L + D +L G +
Sbjct: 248 N-------------EYRSVDIVITTRELAHLIKDADIDFNTLSDDKFDDVLGMYTGAGTI 294
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 364
+G S+GG E R + K I +E IR FR +E+ G LK +
Sbjct: 295 FG---STGGVMEAALRTGYELYTKKSIP-KIELTDIRGGQGFRTAEVEL-GDFKLKVGIV 349
Query: 365 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIYL 423
G ++++ ++ +K KCD F+EVM CP GC++GGGQ PK +S K + L
Sbjct: 350 SGLKHVKKVLDMIKKGKCDMHFIEVMTCPEGCVSGGGQ--PKIIFESDKNIAYDARKRGL 407
Query: 424 ENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
N + P++ NP ++ LY E+L +P K+ + +HT+Y
Sbjct: 408 YNHDSSLPYRKSHENPGIQKLYSEFLGEPLGYKSHELLHTKY 449
>gi|238916167|ref|YP_002929684.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750]
gi|238871527|gb|ACR71237.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750]
Length = 560
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 203/410 (49%), Gaps = 36/410 (8%)
Query: 53 KISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
I+ C C C+++ + E+ + L I N+ ++ ++P RA+ E FG+
Sbjct: 182 NIAETACTLCGQCVSNCPVGALTERDDVGIVLDAIENEDIITVVQIAPAVRAAWGEDFGM 241
Query: 111 SP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
S ++L L+ +G IFDT+ + D+T++E +EF+ R + +ES LP
Sbjct: 242 SKEYATAQRLVAGLRRIGFDYIFDTTFAADMTIMEEGSEFLERLPEIKES-------GLP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + + + +S+ KSPQQ GA K + +KLG P++I+ V++M
Sbjct: 295 MFTSCCPGWVKFVKSEF-PEMAGRLSTAKSPQQMFGAITKSYYAEKLGVDPEKIFCVSIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK +E D G +VD+VLTT EV + + + E L+E
Sbjct: 354 PCLAKK---------------DECTWDGG---KDVDAVLTTREVERMFKAFFIKPEELDE 395
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFRE 348
D L G ++G ++GG E R A + G + F+++R ++E
Sbjct: 396 DEFDNPLGEGTGAGVIFG---ATGGVMEAALRSAYYLVTGNNPDAD-AFQSVRGLEGWKE 451
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ G T+ A+ G N + +V +K + Y FVE+M+CP GC+NGGGQ +
Sbjct: 452 ASFDLNGTTV-NVAVASGLGNTRRLVNAIKKGEVHYDFVEIMSCPGGCINGGGQPYKEDA 510
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
+E L + + L +NP V+ Y+E+ E+P S +A + +H
Sbjct: 511 VMVEERRHVLYGLDKRD-NLRFSHENPSVKQCYEEYFEKPLSHRAHEILH 559
>gi|219854097|ref|YP_002471219.1| hypothetical protein CKR_0754 [Clostridium kluyveri NBRC 12016]
gi|219567821|dbj|BAH05805.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 466
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 208/462 (45%), Gaps = 74/462 (16%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCI--------------TSAETVMLEKQSLD------ 80
V + EP I ++ C+ C CI T + ++ LD
Sbjct: 30 VDAIGGNKGEPQAIDMEKCIMCGQCIQICKGYYSIYDDVATPVSKKLFDRGLLDNVDEPL 89
Query: 81 -------------EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKS 125
E L N + K I+ +P R ++ E FG+ P K+ L+
Sbjct: 90 FAAYSTSRIKNVKEILRNTDVFK--IVQCAPAVRVAIGEEFGL-PFGTLSEGKMAVVLRK 146
Query: 126 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 185
+G ++DT+ DLT++E +E + R + +LPM +S CP W+ Y E Q
Sbjct: 147 IGFDRVYDTNFGADLTIMEEGSELLDRITKG---------GTLPMFTSCCPAWVKYME-Q 196
Query: 186 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 245
+LP++SS KSPQQ GA K + + P +IY+V VMPC K+ E+ RE+
Sbjct: 197 TYPELLPHLSSCKSPQQMAGAIFKSYGAEINKVNPAKIYNVAVMPCTCKEFESEREEMSC 256
Query: 246 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 305
E VD V+TT E+ LI+ ++F L + D +L G +
Sbjct: 257 N-------------EYRSVDIVITTRELAHLIKDADIDFNTLSDDKFDDVLGMYTGAGTI 303
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 364
+G S+GG E R + K I +E IR FR +E+ G LK +
Sbjct: 304 FG---STGGVMEAALRTGYELYTKKSIP-KIELTDIRGGQGFRTAEVEL-GDFKLKVGIV 358
Query: 365 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIYL 423
G ++++ ++ +K KCD F+EVM CP GC++GGGQ PK +S K + L
Sbjct: 359 SGLKHVKKVLDMIKKGKCDMHFIEVMTCPEGCVSGGGQ--PKIIFESDKNIAYDARKRGL 416
Query: 424 ENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
N + P++ NP ++ LY E+L +P K+ + +HT+Y
Sbjct: 417 YNHDSSLPYRKSHENPGIQKLYSEFLGEPLGYKSHELLHTKY 458
>gi|449115934|ref|ZP_21752394.1| hydrogenase, Fe-only [Treponema denticola H-22]
gi|448955420|gb|EMB36187.1| hydrogenase, Fe-only [Treponema denticola H-22]
Length = 596
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 209/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + + K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSRGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + ++D VLTT E + +I+ + + L+E+
Sbjct: 355 CVAKKSEIDMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPQTLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|83590717|ref|YP_430726.1| ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
Length = 460
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 194/382 (50%), Gaps = 50/382 (13%)
Query: 94 ISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 152
+ +P R +LAE FG+SP V ++ L+ LG K ++DT+ + DLT++E E + R
Sbjct: 106 VQFAPAIRFALAEDFGLSPQVVTVGRIVAALRRLGFKYVYDTNFAADLTVMEEGYELLQR 165
Query: 153 YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHI 212
+ + +LP+ SS CP W+ + E Q ++ +S+ KSPQQ GA K +
Sbjct: 166 LQ---------GDGALPLFSSCCPAWVKFVE-QAYPQLIANLSTCKSPQQMAGAIFKTYT 215
Query: 213 CQ-KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 271
Q R ++ VMPC KK E R + G +VD+VLTT
Sbjct: 216 GQLDPDLRSRHLFVTAVMPCIAKKFECNRPEL-------------GGSYGRDVDAVLTTR 262
Query: 272 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 331
E+ LI+ K +++ +L E D+ L G ++GV +GG E V R AA+ + GK
Sbjct: 263 ELAHLIKDKGIDWHSLAEEEPDQPLGEYSGAGAIFGV---TGGVTEAVLRTAAEVVGGKP 319
Query: 332 IEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
+E +EF +R + R+V + + GK L+ + G +N+ I+ + K + F+EVM
Sbjct: 320 LE-EIEFHEVRGMAGTRKVNINL-GKEQLEIIIVAGLKNVVPILDDLIAGKASFHFMEVM 377
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLE----------NVMLADPFKNPLVRS 439
ACP+GCL+GGGQ PK L++T +IY + ++ + +NP ++
Sbjct: 378 ACPAGCLSGGGQ--------PKILVETYRGSIYRQRAASIYNHDRDLPVRKAHENPAIKQ 429
Query: 440 LYDEWLEQPGSEKAKKHVHTEY 461
LY ++L QP E + +HT Y
Sbjct: 430 LYADFLGQPLGELSHALLHTHY 451
>gi|449123663|ref|ZP_21759985.1| hydrogenase, Fe-only [Treponema denticola OTK]
gi|448943916|gb|EMB24798.1| hydrogenase, Fe-only [Treponema denticola OTK]
Length = 596
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 209/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + + K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + ++D VLTT E + +I+ + + L+E+
Sbjct: 355 CVAKKSEIDMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPQTLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFLDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|392404280|ref|YP_006440892.1| hydrogenase, Fe-only [Turneriella parva DSM 21527]
gi|390612234|gb|AFM13386.1| hydrogenase, Fe-only [Turneriella parva DSM 21527]
Length = 583
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 206/425 (48%), Gaps = 50/425 (11%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNINKGKA--VIISLSPQSRASLAEHFGISP-LQV 115
C+ C C T + + N +GK ++ ++P R ++ E FG P +
Sbjct: 191 CVMCGQCSAHCPTGAIVEADETATAWNFLRGKENFTVVQIAPSVRVAIGEEFGYEPGTNL 250
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KL L+ LG ++FDT+ S D+T++E NEF+ R+K + LP+++S C
Sbjct: 251 TGKLYAALRRLGFDAVFDTNFSADVTIMEEANEFVERFKHGKRE--------LPLITSCC 302
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W Y EK L S +P SS KSPQQ +G K + QK+ P + V++MPC KK
Sbjct: 303 PSWTDYMEK-LHSDFIPNFSSTKSPQQIMGVLAKTYYAQKMNIDPAGMRMVSIMPCTAKK 361
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R+ +F ++D VD VLTT E+ +I+ ++F L++ D
Sbjct: 362 YEITRDHEMFA-----SGFKD-------VDVVLTTRELARMIRQAGIDFRHLQDHKADSF 409
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
L + G ++ G++GG E R A L G+ + L F+ IR + + V
Sbjct: 410 LGSYSGAGTMF---GTTGGVMEAALRTAQFILTGEKMP-KLVFEEIRGLEGIKETKVVIA 465
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCD-----YQFVEVMACPSGCLNGGGQIKPKPGQS 410
+ ++ A+ +G ++ ++ +V+ K Y F+EVMACP GC+ GGGQ
Sbjct: 466 QEEIRIAVAHGLGHVGEVLERVRRAKATGEEPPYHFIEVMACPGGCIGGGGQ-------- 517
Query: 411 PKELIKTLETIYLENVMLADPFK-------NPLVRSLYDEWLEQPGSEKAKKHVHTEYH- 462
P + + ++ + D K N V+ +Y+E+LE+P SEKA + +HT YH
Sbjct: 518 PYRVTDAIRKKRMQGLFADDRDKAVRCSHDNAEVQQVYNEFLEKPLSEKAHRLLHTTYHA 577
Query: 463 -PVVK 466
PV K
Sbjct: 578 RPVYK 582
>gi|422342080|ref|ZP_16423020.1| Fe-hydrogenase [Treponema denticola F0402]
gi|325474148|gb|EGC77336.1| Fe-hydrogenase [Treponema denticola F0402]
Length = 596
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 209/418 (50%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + + K V++ ++P R + EH G+
Sbjct: 183 IADADCSLCGQCITHCPVGALRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHIGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDT+ S DLT++E EFI R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRIGADYVFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + +K+G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + ++D VLTT E + +I+ + + L+E+
Sbjct: 355 CVAKKSEIDMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPQTLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + GK FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L+ A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLRIAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL +K +Y +N + +N +++LY+++ E+P S KA +HT++
Sbjct: 515 PIHESGELAVKRGSNLYFIDKNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|386041555|ref|YP_005960509.1| NADH:ubiquinone oxidoreductase subunit [Paenibacillus polymyxa M1]
gi|343097593|emb|CCC85802.1| NADH:ubiquinone oxidoreductase subunit [Paenibacillus polymyxa M1]
Length = 500
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 78 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 134
SL++ + K G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 114 SLNKVADMMKKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 172
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 173 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 222
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSP Q +GA +K + Q P IY V +MPC K+ E R + + + Y
Sbjct: 223 SSCKSPMQMVGALVKTYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------ESDGY 276
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 277 RD-------VDEVLTTRELAYWIKQQGIDFMNLPDEEFDAPLGQYSGAGTIFGV---TGG 326
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 374
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 327 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 385
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 431
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 386 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAASQVRKS 445
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+NP + LYDE+L +P + +HT +
Sbjct: 446 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFQ 476
>gi|451820352|ref|YP_007456553.1| hydrogenase, Fe-only [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786331|gb|AGF57299.1| hydrogenase, Fe-only [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 646
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 213/417 (51%), Gaps = 35/417 (8%)
Query: 59 CLACSGCITS--AETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
C C C+++ + + +L FL N+ K VI ++P R ++ E FG P +
Sbjct: 252 CTHCGACVSACPVDAIFTGDNTL-LFLRNLATPNKVVITQMAPAVRVAIGEAFGFEPGEN 310
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KKL L+ LGV +FDTS DLT++E E R ++ D+ N LP+L+S
Sbjct: 311 VEKKLAAGLRKLGVDYVFDTSWGADLTIMEEAAELQERLEKHLAGDE---NVKLPILTSC 367
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP WI + E+ G +L SS KSP + G K ++ G + +EI V +MPC K
Sbjct: 368 CPSWIKFIEQNYGD-MLEVPSSAKSPMEMFGIVAKEIWAKEKGLKREEISSVAIMPCIAK 426
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA+R +F LDS +V+ V+TT E++ + Q ++ LE+ +D
Sbjct: 427 KYEASRPEFSVNLDS-------------DVNYVITTRELIKIFQDSGIDLRTLEDEEIDT 473
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
++ G ++ G +GG E R A + + G+ ++ ++EF+ +R D FR +EV
Sbjct: 474 VMGEYTGAGIIF---GRTGGVIEAAVRTAMENMTGERVD-NIEFEGLRGWDGFRVCEIEV 529
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+ L+ + +G + ++ KV+ + + +E+MAC GC+ GGGQ PK ++ E
Sbjct: 530 K-DIKLRIGVAHGLREAAKMLDKVRSGEEFFHAIEIMACVGGCIGGGGQ--PKIRKNKDE 586
Query: 414 LIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
+++ L N+ A + NP V ++Y+++L P S KA + +HT Y P K
Sbjct: 587 VLQK-RAEGLNNIDRAKTLRRSNENPEVLAIYEKYLGHPLSNKAHELLHTTYFPRAK 642
>gi|310642488|ref|YP_003947246.1| hydrogenase, fe-only [Paenibacillus polymyxa SC2]
gi|309247438|gb|ADO57005.1| Hydrogenase, Fe-only [Paenibacillus polymyxa SC2]
Length = 446
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 78 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 134
SL++ + K G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 60 SLNKVADMMKKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 118
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 119 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 168
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSP Q +GA +K + Q P IY V +MPC K+ E R + + + Y
Sbjct: 169 SSCKSPMQMVGALVKTYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------ESDGY 222
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 223 RD-------VDEVLTTRELAYWIKQQGIDFMNLPDEEFDAPLGQYSGAGTIFGV---TGG 272
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 374
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 273 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 331
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 431
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 332 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAASQVRKS 391
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+NP + LYDE+L +P + +HT +
Sbjct: 392 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFQ 422
>gi|210621816|ref|ZP_03292845.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275]
gi|210154580|gb|EEA85586.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275]
Length = 578
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 210/413 (50%), Gaps = 32/413 (7%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT L E+ +D+ + + K ++ ++P RA+ E G+
Sbjct: 182 KIEESDCALCGQCITHCPVGALRERDDVDKVFDALADPEKITVVQVAPAVRAAWGESLGL 241
Query: 111 S-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
K+L L+ +G IFDT+ S DLT++E +EF+ + K + N+ P
Sbjct: 242 EREAATVKRLVAALRKMGFNYIFDTTFSADLTIMEEGSEFVEKLKN-------KENNKFP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ Y + ++ +S+ KSPQQ GA K + + L PD+IY +++M
Sbjct: 295 MFTSCCPGWVRYMKSHYPD-MVDLLSTSKSPQQMFGAITKSYYAELLDVSPDKIYSISIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E + + +T D+ +VD V+TT EV +I+ + ++ LEE
Sbjct: 354 PCIAKKHEC-------DIPTINDTEADK-----DVDVVITTREVDRMIRAEHIDVANLEE 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D L G ++G ++GG E R A + G+ + FK +R D ++E
Sbjct: 402 EEFDMPLGVGTGAGVIFG---ATGGVMEAALRSAYYLVTGENPDPD-AFKEVRGMDGWKE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+E+ G T++K A+ G +N +++ ++ + +Y FVEVMACP GC GGGQ G
Sbjct: 458 SQIEING-TVVKTAVTSGLKNTDKLIQAIRNGEVEYDFVEVMACPGGCSGGGGQ-PIHLG 515
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
Q+ + + N+ + +NP + +Y+++L P SEKA K +HT++
Sbjct: 516 QTSNRVDNLYKLDKEANLRFS--HENPSIVKVYEDYLGAPMSEKAHKLLHTDH 566
>gi|374579235|ref|ZP_09652329.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
gi|374415317|gb|EHQ87752.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
Length = 580
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 205/418 (49%), Gaps = 39/418 (9%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS 111
+S C C CI T + E +D+ +N + V++ +P R +L E F +
Sbjct: 190 LSQTACTFCGQCIAVCPTGALTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFDLE 249
Query: 112 PLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + K+ L+ LG +FDT + DLT++E E + R K LP+
Sbjct: 250 PGTIVTGKMVAALRRLGFDRVFDTDFAADLTIMEEATELVHRIKH---------GGRLPL 300
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E Q +L S+ KSP + +G IK + + LG P I V+VMP
Sbjct: 301 LTSCCPAWVKFFEHQFPD-LLDIPSTCKSPHEMLGVLIKSYYARTLGIDPKTITVVSVMP 359
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EAAR + +G E +VD V+TT E+ +I+ +++F+ L++
Sbjct: 360 CVAKKYEAARPEL------------SQGAETADVDIVITTRELARMIREASIHFDHLKDQ 407
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D L ++G ++GG E R A + + G+ +E +EF+ +R D +E
Sbjct: 408 EFDHPLGESTGASVIFG---ATGGVLEAALRTAYEVITGETLE-KVEFEALRGMDGLKEA 463
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ + G+ + A+ +G N + ++ K++ + +Y +E+MACP GC+ GGGQ P
Sbjct: 464 VIPIAGQDY-RAAVIHGLGNARKVLEKIQAGESNYDVIEIMACPGGCIGGGGQ--PYHHG 520
Query: 410 SPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L +Y E+ A P + NP + LY ++L +P E+A K +HT Y P
Sbjct: 521 NLDILADRAGALYRED--RAKPLRKSHENPAIIGLYKDYLGEPYGERAHKLLHTSYVP 576
>gi|366165979|ref|ZP_09465734.1| hydrogenase [Acetivibrio cellulolyticus CD2]
Length = 594
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 191/409 (46%), Gaps = 36/409 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T L E D+ +N K VI+ +P R +L E FG+ +
Sbjct: 210 CTYCGQCVQVCPTAALTEVYHTDKVWEALNDPDKHVIVQTAPAVRVALGELFGMEAGSIV 269
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ T LK +G +FDT D+T++E +E I R K + +LP+L++ C
Sbjct: 270 TGKMVTALKRMGFDGVFDTDFGADITVMEEASELIYRIKNKK---------TLPILTNCC 320
Query: 176 PGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
P W+ + E Q I +P S+ KSP G+ K + +K G PD I V+VMPC K
Sbjct: 321 PAWVKFIEHQFPELIHIP--STCKSPHIMFGSIAKTYYAEKNGLDPDNIVVVSVMPCIAK 378
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + + VD V+TT E+ +I+ + F+ L +S D+
Sbjct: 379 KAEAKRPELTKDAHNN-------------VDIVITTRELGAMIREAGIEFDRLPDSEFDR 425
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
L ++G AG G E V R A + L G+ ++ +EF+ +R + A
Sbjct: 426 PLGETTGASVIFGTAG---GVIEAVMRTACEWLTGEPLK-KVEFEELRGLEGVRKATVKI 481
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G K + G N + I+ ++ K DY +E+MACP GC+ GGGQ P + + +
Sbjct: 482 GDQEFKIGIASGLGNARMILEDIRDGKADYHAIEIMACPGGCVAGGGQ--PYHHGNNEII 539
Query: 415 IKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K E IY E N + +N V LY +L +P E A + +HT +
Sbjct: 540 KKRREAIYEEDKNKKIRKSHENKEVLELYKNYLGEPFGEDAHELLHTHF 588
>gi|414153008|ref|ZP_11409335.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411455390|emb|CCO07237.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 658
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 174/338 (51%), Gaps = 31/338 (9%)
Query: 59 CLACSGCITSAETVMLEKQS--LDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
C+ C CI L S +DE + I N K VI ++P RA+L E FG+ + V
Sbjct: 189 CINCGQCIAVCPCGALTSNSTAIDEVWAAIRNPKKTVICQIAPAPRAALGEEFGLGSVDV 248
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ +G +FDT + D+T IE NEF++R + ++ LP+ +S C
Sbjct: 249 TKKIVAALRKIGFDKVFDTVFTADMTTIEEANEFLSRLVKGEK---------LPLFTSCC 299
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ YAE Q +L +SS +SPQQ G+ +K ++LG P +++ V++MPC KK
Sbjct: 300 PGWVKYAE-QFHPELLNNLSSCRSPQQMFGSLLKKKYAKELGIAPQDMFVVSIMPCTAKK 358
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R +F+ E Y +VD+VLTT E + + + F +L +S D+
Sbjct: 359 YEAKRPEFM-----TEGAY--------DVDAVLTTVEAARMFREAGIIFSSLADSEFDQP 405
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
+ G L+ G++GG E+V R+ A + EG ++ + R + ++A G
Sbjct: 406 MQQATGSGVLF---GTTGGVMESVVRYVAGKMLNA--EGRVDVEFTRGMENTKIAGINVG 460
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
+ L A+ G + +++K++ + + VEVMACP
Sbjct: 461 EHKLTLAVVNGLAAAEELIKKIQSGQIEVHAVEVMACP 498
>gi|297616733|ref|YP_003701892.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
gi|297144570|gb|ADI01327.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Length = 563
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 215/416 (51%), Gaps = 47/416 (11%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C C + + EK+ +D FL I + K V+ ++P R ++AE G+ +
Sbjct: 181 CVMCGQCALACPVGAITEKEEIDRFLEAIADPEKIVVTQIAPAVRVAVAEEVGMETGSL- 239
Query: 117 KKLTTF---LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ TF L+ LG +F T+ + DLT++E NE + R K+ +LPML+S
Sbjct: 240 -DMLTFVAGLRQLGFDYVFHTNFTADLTIMEEGNELLKRLKE---------GGTLPMLTS 289
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
PGWI + E LP++S+ KSPQQ GA +K + K+G P +I+ V++MPC
Sbjct: 290 CSPGWINFIETFYPEQ-LPHLSTCKSPQQMFGALVKTYWADKMGIDPAKIFSVSIMPCTA 348
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK EA R + RD G + +VD VLTT EV L ++ V F+ L+ S D
Sbjct: 349 KKYEATRPEM-----------RDSGYQ--DVDLVLTTREVGRLFRMCGVGFDKLQPSNFD 395
Query: 294 KMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
++ G G A G+SGG E R + + GK +E + F +R + +E
Sbjct: 396 SLM------GAYTGAAVIFGASGGVMEAALRTVYEVVTGKTLE-DVNFTAVRGFEGMKEA 448
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++G T +K A+ + I+ ++K Y F+E+M CP GC+ GGGQ P P
Sbjct: 449 EVDLDG-TKVKVAVANSLGCARKIMEEIKAGTSPYHFIEIMCCPGGCIGGGGQ--PIPST 505
Query: 410 SPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
K ++ ++ IY+E+ + L +NP V+ LY+++L +P K+ + +HT Y P
Sbjct: 506 VAKR-VERIKGIYIEDEGLPLRKSHENPEVKLLYEDFLHEPLGHKSHELLHTHYTP 560
>gi|114567942|ref|YP_755096.1| (Fe) hydrogenase large subunit HymC [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338877|gb|ABI69725.1| (Fe) hydrogenase, large subunit HymC, putative [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 563
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 208/411 (50%), Gaps = 37/411 (9%)
Query: 59 CLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C+ C C + ++E + ++EFL+ + + K VI ++P R ++AE GI+ +
Sbjct: 181 CVMCGQCALVCPVGAIIENEEVEEFLAAVADPEKIVITQIAPAVRVAVAEELGITTGALD 240
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
L+ LG +F T+ + DLT++E NE + R K+ +LPML+S
Sbjct: 241 MLNFVAGLRQLGFDYVFHTNFTADLTILEEGNELLKRLKEG---------GTLPMLTSCS 291
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E L ++S+ KSPQQ GA K + +K+G P +IY V++MPC KK
Sbjct: 292 PGWINFIETFYPDQ-LDHLSTCKSPQQMFGALAKTYWAEKMGIDPAKIYSVSIMPCTAKK 350
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + +RD VD VLTT EV L ++ ++ LE S D +
Sbjct: 351 FEAQRPEM------NASGFRD-------VDLVLTTREVGKLFRMGGAYWDKLEPSNFDSL 397
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L G ++ G+SGG E R + + G+ +E + F +R ++ +++
Sbjct: 398 LGAYTGAGVIF---GASGGVMEAALRTVYEVVTGQTLE-DVNFTGVRGFESMKKAEVDLS 453
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G T +K A+ + I+ ++K Y F+EVM CP GC+ GGGQ P KE
Sbjct: 454 G-TKVKVAVANSLGAARKIMDEIKAGTSPYHFIEVMCCPGGCIGGGGQPIPSTIAKKKER 512
Query: 415 IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
I E IY+E+ + L NP V+ LY+++L++P K+ + +HT YHP
Sbjct: 513 I---EAIYVEDEGLPLRKSHDNPEVKKLYEDFLKEPLGHKSHELLHTHYHP 560
>gi|18073435|emb|CAC83291.1| Fe-hydrogenase ['Chlorella' fusca]
gi|21732235|emb|CAC83290.1| Fe-hydrogenase ['Chlorella' fusca]
Length = 436
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 199/406 (49%), Gaps = 40/406 (9%)
Query: 76 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDT 134
+Q+LDE + +I ++ R ++AE G++P V +L T L+ LG +FDT
Sbjct: 42 QQALDELAKPKESRRLMIAQIASAVRVAIAETIGLAPGDVTIGQLVTGLRMLGFDYVFDT 101
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
DLT++E E + R + E + LPM +S CPGW+ EK ++PY+
Sbjct: 102 LFGADLTIMEEGTELLHRLQDHLEQHPNKEEP-LPMFTSCCPGWVAMVEKS-NPELIPYL 159
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSPQ +GA IK++ Q++G +P +I +V+VMPC K+ EA RE F
Sbjct: 160 SSCKSPQMMLGAVIKNYYAQQVGVQPSDICNVSVMPCVRKQGEADREWF---------NT 210
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
GL +VD V+TT EV + + + L ES D + L+ G++GG
Sbjct: 211 TGAGLAR-DVDHVVTTAEVGKIFLERGIKLNELPESNFDNPIGEGTGGALLF---GTTGG 266
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIR----------------NSDFREVALEVEGKTL 358
E R + + K + G ++F+ +R +S F+ A
Sbjct: 267 VMEAALRTVYEVVTQKPM-GRVDFEEVRGLEGIKEAEITLKPGDDSPFKAFAGADGQGIT 325
Query: 359 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KT 417
LK A+ G N + +++ + K Y F+EVMACP GC+ GGGQ P + K+++ K
Sbjct: 326 LKIAVANGLGNAKKLIKSLSEGKAKYDFIEVMACPGGCIGGGGQ----PRSTDKQILQKR 381
Query: 418 LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +Y E + NP +++LYD++L P S KA +HT Y
Sbjct: 382 QQAMYNLDERSTIRRSHDNPFIQALYDKFLGAPNSHKAHDLLHTHY 427
>gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfobulbus propionicus DSM 2032]
gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfobulbus propionicus DSM 2032]
Length = 683
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 205/415 (49%), Gaps = 36/415 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQS-LDEFLSNINKGKAVIIS-LSPQSRASLAEHFGIS 111
+ +C+ C C + T L S +D I+ V+++ ++P R ++ E FG+
Sbjct: 188 LGTTECVNCGQCASVCPTGALAPASEIDAVWKAIHDPNTVVVAQIAPAVRVAIGEQFGLE 247
Query: 112 -PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
L ++ +K +G ++DTS + DLT++E EF+AR +++ ER LP+
Sbjct: 248 YGLNTTGQVVAAMKRMGFNIVYDTSFTADLTVVEEAGEFMAR-----KTNGER----LPL 298
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ +AE Q +L +SS +SPQQ +G+ +KH + +LG ++ V++MP
Sbjct: 299 FTSCCPGWVKFAE-QYFPQLLGNLSSCRSPQQMMGSMVKHTLPAQLGRERKDVVMVSIMP 357
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA R +F + G P+VD VLTT E+ +I+ ++ L +
Sbjct: 358 CTAKKFEAKRPEF-----------KTGG--SPDVDFVLTTQELARMIEESGLSLNKLNPA 404
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D + G ++ G+SGG E V R+A + G+ EF+ IR + R +
Sbjct: 405 SFDMPMGFKTGAGVIF---GNSGGVTEAVLRYAVGKITGQN-PVDPEFEEIRGEESLRVI 460
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
EV G LK A+ +G + ++ ++ VEVMACP GC+ G GQ P
Sbjct: 461 RTEV-GGLELKLAIVHGLGKAREVMHQILDGSLIVDLVEVMACPGGCIGGAGQ--PVGRD 517
Query: 410 SPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ E +Y + + L +N V Y ++L +PGS ++ + +HT YH
Sbjct: 518 IAERRRARTEWLYNTDRLLDLHCSQENHFVNECYQKYLGEPGSRESHRLLHTHYH 572
>gi|355678906|ref|ZP_09061090.1| hypothetical protein HMPREF9469_04127 [Clostridium citroniae
WAL-17108]
gi|354812390|gb|EHE97008.1| hypothetical protein HMPREF9469_04127 [Clostridium citroniae
WAL-17108]
Length = 461
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 213/411 (51%), Gaps = 26/411 (6%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSN--INKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C C + +Q ++ ++ K V++S SP RA+L E FG+
Sbjct: 58 CINCGQCANVCPVESIREQPEYGMVAAEVMDPDKIVVVSTSPSVRAALGEEFGMEEGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L++LGV + DT+ + DLT++E +E I R + LP +S C
Sbjct: 118 QGKMVALLRTLGVDYVLDTNFAADLTIVEEASELIDRITTGRRP--------LPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE +LP+IS+ KSP G TIK + +K+G P +I +V V PC KK
Sbjct: 170 PAWVKFAEIYYPD-MLPHISTAKSPIGMQGPTIKTYFARKMGIDPKKIVNVAVTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R+ ++ + EE ++ + ++D V+TT E+ ++K ++F +LE+S D++
Sbjct: 229 YEIRRQ----EMKAAEEYLGEDDMR--DMDYVITTRELAQWARMKRIDFSSLEDSDYDRL 282
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEV 353
+ G ++G ++GG E R A + + G+ G L E +R + RE +L++
Sbjct: 283 MGQGSGAGVIFG---NTGGVMEAALRTAYEYITGEQAPGVLYELTPVRGMEAVREASLQI 339
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
T+ A+ YG +L+ + +++ + Y FVEVM CP GC+ GGGQ K K +
Sbjct: 340 ADMTV-NVAVVYGTASLRRFLEEMRNGEKQYHFVEVMTCPGGCIGGGGQPKDKKFEGDAL 398
Query: 414 LIKTLETIYLENVMLADPF--KNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K ++++Y + + +N ++ LY E+ ++P SE A+K +HT Y
Sbjct: 399 RQKRIDSLYKRDGAMTVRLSHENEEIKVLYQEFYKKPLSELAEKMLHTSYR 449
>gi|414154762|ref|ZP_11411079.1| Hydrogenase, Fe-only [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411453593|emb|CCO08983.1| Hydrogenase, Fe-only [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 485
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 201/417 (48%), Gaps = 42/417 (10%)
Query: 59 CLACSGCITS-AETVMLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGISPLQVF 116
C C C+ + + E+ + +N V++ SP SR SL E FG+ V
Sbjct: 92 CTNCGQCVLRCTNSALTERDDTAKVWQALNNHDLHVVVQTSPASRVSLGEEFGLKAGTVV 151
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K T LK LG ++FDT + DLT++E E + R + N LP +S
Sbjct: 152 EGKQVTALKQLGFAAVFDTGFAADLTVMEEATELVQRLTG-------KLNKPLPQFTSCS 204
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +LP++S+ KSPQQ +GA IK + QK G P +I+ V+VMPC KK
Sbjct: 205 PGWVKFCE-HFYPDLLPHMSTCKSPQQMLGAVIKSYYAQKKGIDPAKIFTVSVMPCTAKK 263
Query: 236 LEAAREDFVFQLDSQEETYRDEGL-----EIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
E R + D GL I ++D+ LTT E+ +I+ K +NF L +S
Sbjct: 264 FECQRPEM-----------NDAGLLAGKPGIKDMDAALTTRELARMIKQKNINFTKLGDS 312
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRN-SDFRE 348
D + G ++ GSSGG E R A L + + L F +R + +E
Sbjct: 313 LYDSIFGEKSGAGLIF---GSSGGVTEAAVRTAFYLLTNTRPPDQLLNFTEVRGLTGIKE 369
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ + G LK A+C G N + ++ ++ + + FVE MACP GC+ GGGQ PK
Sbjct: 370 AVVNIPGFGNLKVAVCQGLGNARKVLELIRSGQGSWHFVEFMACPGGCVGGGGQ--PKTT 427
Query: 409 QSPKELIKTLETIYLENVMLAD----PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +T L N+ A ++N V+ +Y E+ P S+KA + +HT+Y
Sbjct: 428 DNA----RTARATGLYNLDAASSKRLSYENQEVQKIYQEFFGFPMSDKAHQLLHTDY 480
>gi|404369095|ref|ZP_10974441.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
gi|313688386|gb|EFS25221.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
Length = 680
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 217/430 (50%), Gaps = 38/430 (8%)
Query: 55 SLKD------CLACSGCIT----SAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASL 104
SLKD C+ C C S+ T E Q + E + N K K VI S SP R +L
Sbjct: 48 SLKDTNDTAVCINCGQCANVCPASSITEKYEYQQIAEAVKN--KDKIVIFSTSPSVRVAL 105
Query: 105 AEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E FG+ + + K+ + L++LG I DT+ + DLT++E +E I R
Sbjct: 106 GEEFGMEKGSLVEGKMVSLLRALGGNYILDTNFAADLTIVEEASELIQRITTG------- 158
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LP +S CP W+ YAE ILP +S+ KSP G TIK + +K+ P++I
Sbjct: 159 -SKPLPQFTSCCPAWVKYAE-IYHPEILPNLSTAKSPIGMQGPTIKTYFAKKMNIDPEKI 216
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAV 282
+V V PC KK E R D ++ + G+E + ++D V+TT E+ + V
Sbjct: 217 VNVAVTPCTAKKFEIRR-------DEMKDAGKKLGIEDMRDMDYVITTRELALWAKEAGV 269
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTI 341
+F+ALEES DK++ G ++G ++GG E R A + + + L E K +
Sbjct: 270 DFKALEESSFDKVMGESTGAGIIFG---NTGGVMEAALRTAYEYVTHEKAPADLFELKEV 326
Query: 342 RN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
R +E ++V G + A+ YG +N ++ KVK + Y F+EVM CP GC+ GG
Sbjct: 327 RGMGGIKEAGIKV-GDLTVNVAVIYGTENADKVIEKVKNGEKSYHFIEVMTCPGGCIGGG 385
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GQ K + + K ++++Y ++ + + +N + +LY E+ P SE A++ +H
Sbjct: 386 GQPKDLDAERDEINQKRIDSLYKKDTLTPIRSSHENSEIIALYKEFYGHPLSELAEEMLH 445
Query: 459 TEYHPVVKSI 468
T+Y+ K +
Sbjct: 446 TQYYDRSKEL 455
>gi|452204429|ref|YP_007484558.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
BTF08]
gi|452111485|gb|AGG07216.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
BTF08]
Length = 573
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 211/416 (50%), Gaps = 41/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K+ LP ++S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEG---------GVLPQITSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +L+E P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + L V+
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVD 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK A+ +G N + ++ ++K Y F+E+MACP GC+ GGGQ P + L
Sbjct: 463 GLE-LKVAVAHGLGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSL 517
Query: 415 IKTL-ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
K E +Y E+ + NP V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 518 KKKRGEALYEEDRNMPKRCSHHNPSVEKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|289432125|ref|YP_003461998.1| hydrogenase, Fe-only [Dehalococcoides sp. GT]
gi|288945845|gb|ADC73542.1| hydrogenase, Fe-only [Dehalococcoides sp. GT]
Length = 573
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 211/416 (50%), Gaps = 41/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K+ LP L+S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEG---------GVLPQLTSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +L+E P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + L V+
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVD 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK A+ +G N + ++ ++K Y F+E+MACP GC+ GGGQ P + L
Sbjct: 463 GLE-LKVAVAHGLGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSL 517
Query: 415 IKTL-ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
K E +Y E+ + NP + +Y ++LE+P +++ K +HTEY PVV
Sbjct: 518 KKKRGEALYEEDRNMPKRCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|452203011|ref|YP_007483144.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
DCMB5]
gi|452110070|gb|AGG05802.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
DCMB5]
Length = 573
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 211/416 (50%), Gaps = 41/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K+ LP ++S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEG---------GVLPQITSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +L+E P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + L V+
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVD 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK A+ +G N + ++ ++K Y F+E+MACP GC+ GGGQ P + L
Sbjct: 463 GLE-LKVAVAHGLGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSL 517
Query: 415 IKTL-ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
K E +Y E+ + NP V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 518 KKKRGEALYEEDRNMPKRCSHHNPSVEKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|57235003|ref|YP_180897.1| [Fe] hydrogenase, large subunit HymC [Dehalococcoides ethenogenes
195]
gi|57225451|gb|AAW40508.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides
ethenogenes 195]
Length = 573
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 213/420 (50%), Gaps = 49/420 (11%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPTKHVVVQEAPSVRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K LP ++S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTIMEEGSELVERVKDG---------GVLPQITSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P +I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKSGIDPKDIINVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +L+E P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFASLDEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + ++ ++
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYTLITGRELE-NLDIEPVRGLEGIKTASVNID 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G +K A+ +G N ++++ ++K Y F+E+MACP GC+ GGGQ P
Sbjct: 463 GLE-VKVAVAHGLGNARHLLDEIKEGVSPYHFIEIMACPGGCVGGGGQ--------PIRF 513
Query: 415 IKTL-----ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
TL E +Y E+ +A NP V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 514 DSTLKKKRGEALYEEDRNMAKRCSHHNPSVEKIYKDYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|328955433|ref|YP_004372766.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2]
gi|328455757|gb|AEB06951.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2]
Length = 585
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 204/412 (49%), Gaps = 38/412 (9%)
Query: 59 CLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C C CIT L ++ E F + + + ++ ++P R + E FG++P Q
Sbjct: 188 CSLCGQCITHCPVGALRERDDTEQVFDALGDPERICLVQIAPAVRTAWGETFGLAPGQAT 247
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++L L+ +G IFDTS S DLT++E +E + R K++ ES + + + PM +S C
Sbjct: 248 VERLAAALRMVGFDYIFDTSFSADLTIMEEASELLERLKRAGESGE---HPTFPMFTSCC 304
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ Y + ++ +S+ KSPQQ GA K + Q LG P +I+ V++MPC KK
Sbjct: 305 PGWVRYVKDHY-PELVDQLSTSKSPQQMFGAIAKTYYAQALGVDPSKIFSVSIMPCVAKK 363
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAA T D P+VD LT EV +++ ++ L++ PLD+
Sbjct: 364 AEAALPSM---------TGADGA---PDVDVALTVREVCRMVKACHIDVAKLDDEPLDQP 411
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 355
L G +G S+GG + R A G+ + F +R D + A G
Sbjct: 412 LGTHTGAGVAFG---STGGVMDAALRSAYYFATGERCDAD-AFSDVRGMDGWKEATFTMG 467
Query: 356 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC-------LNGGGQIKPKPG 408
LK A+ +G N +N++ +K + Y FVEVMACP GC ++ G ++ + G
Sbjct: 468 DKALKVAVVHGLANARNLLDALKSGEVGYDFVEVMACPGGCVGGGGQPIHDGMELAGERG 527
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
E++ L+ + L ++NP ++ Y ++L P SE+A++ +HT+
Sbjct: 528 ----EVLWGLD----RSSNLRRSYENPAIQMCYADYLGAPLSERAEELLHTD 571
>gi|168212325|ref|ZP_02637950.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
gi|170716012|gb|EDT28194.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
Length = 696
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 216/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S+ K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDAISD--KDKIVIVSTSPAVRVSLGEEFNMNDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFNYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWIKYAE-TFHPEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + +VD V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDVDYVITTREVAIWAKEKEIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENASKFISKMKNEDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y N+ L ++N ++ LY+++ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSNMKLRVSYENEEIKKLYEKFYEKPLSNLAEEMLHTTYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|147668873|ref|YP_001213691.1| hydrogenase, Fe-only [Dehalococcoides sp. BAV1]
gi|146269821|gb|ABQ16813.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Dehalococcoides sp. BAV1]
Length = 573
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 211/416 (50%), Gaps = 41/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K+ LP L+S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEG---------GVLPQLTSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +L+E P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + L V+
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVD 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK A+ +G N + ++ ++K Y F+E+MACP GC+ GGGQ P + L
Sbjct: 463 GLE-LKVAVAHGLGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSL 517
Query: 415 IKTL-ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
K E +Y E+ + NP + +Y ++LE+P +++ K +HTEY PVV
Sbjct: 518 KKKRGEALYEEDRNMPKRCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|168216086|ref|ZP_02641711.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
gi|182381892|gb|EDT79371.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
Length = 696
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 216/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S+ K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDAISD--KDKIVIVSTSPAVRVSLGEEFNMNDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHPEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENASKFISKMKNSDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y N+ L ++N ++ LY+E+ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSNMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTTYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|302876890|ref|YP_003845523.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|307687576|ref|ZP_07630022.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|302579747|gb|ADL53759.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
Length = 574
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 192/412 (46%), Gaps = 36/412 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ L EK +D + + K VI++++P R +L E F + +
Sbjct: 189 NCLLCGQCVAVCPVAALSEKPHIDRVKEALEDPEKHVIVAMAPSVRTALGELFKMGYGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T LK LG IFD + D+T++E E I R +N PM +S
Sbjct: 249 VTGKIYTALKELGFNRIFDINFGADMTIMEEATELIQRIN---------NNGPFPMFTSC 299
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ AE +L +SS KSPQQ GA K + P +I+ VT+MPC K
Sbjct: 300 CPGWVRQAENYYPE-LLSNLSSAKSPQQIFGAATKSYYPSISDIDPSKIFTVTIMPCTAK 358
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + ++GL +D+V+TT E+ +++ +NF LE+ D
Sbjct: 359 KYEADRPEM-----------ENDGLR--NIDAVITTRELAKMVKDAKINFATLEDGECDL 405
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R AK K +E++ +R + +E +E+
Sbjct: 406 AMGEYTGAGTIFG---ATGGVMEAALR-TAKDFVEKADLHDIEYEAVRGLNGIKEATVEI 461
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + A+ G N+ ++ + + Y F+EVMACP GC+NGGGQ
Sbjct: 462 -GGSEYNVAVINGSVNVFEFIKSGALDRKQYHFIEVMACPGGCVNGGGQPHVPVADRMDM 520
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+ + L +N+ +N ++ +YD + PG A K +H +Y
Sbjct: 521 DIRLVRASVLYNQDKNLPKRKSHENEALKRMYDSYYGTPGEGLAHKLLHVKY 572
>gi|342732583|ref|YP_004771422.1| hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455975|ref|YP_005668570.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417962131|ref|ZP_12604404.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-2]
gi|417965694|ref|ZP_12607182.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-4]
gi|417969101|ref|ZP_12610063.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-co]
gi|418016010|ref|ZP_12655575.1| ferredoxin hydrogenase [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418372837|ref|ZP_12964929.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330038|dbj|BAK56680.1| hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506345|gb|EGX28639.1| ferredoxin hydrogenase [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984318|dbj|BAK79994.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380331061|gb|EIA22172.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-2]
gi|380335972|gb|EIA26051.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-4]
gi|380338470|gb|EIA27357.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-co]
gi|380342506|gb|EIA30951.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 579
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 197/412 (47%), Gaps = 35/412 (8%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+C+ C C+ L ++S E + N VI++++P R +L E F + +
Sbjct: 189 NCILCGQCVNVCPVDALSEKSHIERVKEALENPDIHVIVAMAPSVRTALGELFKMDYGVD 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ +G IFD + DLT++E E + + K + +++ PM +S
Sbjct: 249 VTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELVNKIKNN--------DTNFPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ AE +L S+ KSPQQ GA K + P +++ VT+MPC K
Sbjct: 301 CPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKSYYPAIENLDPKKVFTVTIMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + V + G I +D+V+TT E +++ ++F +LE+ LD+
Sbjct: 360 KFEADRPEMV-----------NNG--IRNIDAVITTREFGRMLKELKIDFSSLEDGELDE 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++GV +GG E R A L K ++ +E+K +R + +E +E+
Sbjct: 407 AMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENKDLD-KIEYKDVRGFEGIKEATVEI 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
K A+ G N +++ + K Y F+EVMAC GC+NGGGQ P K
Sbjct: 463 NNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEVMACYGGCINGGGQPYVTPEMRSKI 521
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L L +N+ NP + +YD ++ +PG A + +H +Y
Sbjct: 522 DYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYMGKPGKGLAHEILHQKY 573
>gi|417959526|ref|ZP_12602321.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-1]
gi|380333157|gb|EIA23803.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-1]
Length = 564
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 197/412 (47%), Gaps = 35/412 (8%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+C+ C C+ L ++S E + N VI++++P R +L E F + +
Sbjct: 174 NCILCGQCVNVCPVDALSEKSHIERVKEALENPDIHVIVAMAPSVRTALGELFKMDYGVD 233
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ +G IFD + DLT++E E + + K + +++ PM +S
Sbjct: 234 VTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELVNKIKNN--------DTNFPMFTSC 285
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ AE +L S+ KSPQQ GA K + P +++ VT+MPC K
Sbjct: 286 CPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKSYYPAIENLDPKKVFTVTIMPCTAK 344
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + V + G I +D+V+TT E +++ ++F +LE+ LD+
Sbjct: 345 KFEADRPEMV-----------NNG--IRNIDAVITTREFGRMLKELKIDFSSLEDGELDE 391
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++GV +GG E R A L K ++ +E+K +R + +E +E+
Sbjct: 392 AMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENKDLD-KIEYKDVRGFEGIKEATVEI 447
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
K A+ G N +++ + K Y F+EVMAC GC+NGGGQ P K
Sbjct: 448 NNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEVMACYGGCINGGGQPYVTPEMRSKI 506
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L L +N+ NP + +YD ++ +PG A + +H +Y
Sbjct: 507 DYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYMGKPGKGLAHEILHQKY 558
>gi|258513528|ref|YP_003189750.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
gi|257777233|gb|ACV61127.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
Length = 573
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 135/416 (32%), Positives = 214/416 (51%), Gaps = 42/416 (10%)
Query: 55 SLKD--CLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
SL D C+ C C + ++EK + E S + + K V++ +P +R S+ E FG+
Sbjct: 185 SLSDSTCVNCGQCALVCPTAAIVEKNQVQEVWSALADPAKHVVVQTAPATRISVGEIFGL 244
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
P V K+ L+ LG +FDT + DLT++E +E I R +LP
Sbjct: 245 EPGSLVTGKMVAALRRLGFDKVFDTDFTADLTIMEEGSELIRRLN---------GKGALP 295
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+++S PGWI + E +LP++S+ KSPQQ GA K + +K G P I+ V++M
Sbjct: 296 LITSCSPGWIKFIEHHYPD-LLPHLSTCKSPQQMFGALAKTYYAEKAGLDPGSIFVVSIM 354
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA R + Y+D VD VLTT E+ +++ ++F AL E
Sbjct: 355 PCTAKKYEAGRPEM------NSSGYQD-------VDVVLTTRELGKMLKEAGIDFTALPE 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D+ L G ++ G++GG E R + + G+ + +EFK +R + +E
Sbjct: 402 ENYDQPLGISTGAGVIF---GATGGVMEAALRTGYELVTGETL-ASIEFKDVRGMEGVKE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQFVEVMACPSGCLNGGGQIKPKP 407
A++++G T+L A+ +G N + ++ K+ R D Y F+E+M CP GC+ GGGQ P P
Sbjct: 458 AAIDLKG-TILNVAVAHGLGNARELLEKI--RNGDIYHFIEIMCCPGGCIGGGGQ--PIP 512
Query: 408 GQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K IY +++ L +NP V+SLY E+L +P K+ + +HT Y
Sbjct: 513 TDQETRL-KRAAGIYSTDQSMPLRKSHENPAVQSLYKEFLGEPLGHKSHQLLHTVY 567
>gi|134301119|ref|YP_001114615.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134053819|gb|ABO51790.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfotomaculum reducens MI-1]
Length = 594
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 191/409 (46%), Gaps = 36/409 (8%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T L E D+ IN K VI+ +P R +L E FG+ V
Sbjct: 210 CTYCGQCVMVCPTAALTEVYHTDKVWEAINDPDKHVIVQTAPAVRVALGELFGMEAGTVV 269
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ T LK +G +FDT DLT++E +E I R K +N +LP+L++ C
Sbjct: 270 TGKMVTALKRMGFDEVFDTDFGADLTIMEEASELIYRLK---------NNKTLPILTNCC 320
Query: 176 PGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
P W+ + E Q I +P S+ KSP G K + +K G PD I V+VMPC K
Sbjct: 321 PAWVKFIEHQFPELIHVP--STCKSPHIMFGTIAKTYYAEKNGLDPDNIVVVSVMPCIAK 378
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + + VD V+TT E+ +I+ + F L +S D
Sbjct: 379 KAEAKRPELTKDAHNN-------------VDIVITTRELGAMIKEAGIEFVKLPDSEFDS 425
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
L ++G AG G E R A++ + GK ++ +EF+ +R + A
Sbjct: 426 PLGESTGASVIFGTAG---GVIEAALRTASEWMTGKPLD-RVEFEELRGMEGVRRATVKI 481
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK + G N ++I+ ++ + DY +E+MACP GC+ GGGQ P + + +
Sbjct: 482 GDQELKIGIASGLGNARHILEDIRDGRADYHAIEIMACPGGCIAGGGQ--PYHHGNHEII 539
Query: 415 IKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K E IY E+ + +N + LY +L +P + A + +HT +
Sbjct: 540 KKRREAIYEEDRRKKVRKSHENKEILELYKNYLGEPFGKLAHELLHTHF 588
>gi|160902609|ref|YP_001568190.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
gi|160360253|gb|ABX31867.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
Length = 569
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 213/410 (51%), Gaps = 41/410 (10%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
DC C CI T L E +D+ + + ++ K VI+ +P R ++AE F P ++
Sbjct: 191 DCTNCGQCILECPTGALHEVYQMDQVWTALSDESKYVIVQTAPAVRVAIAEEFDAEPGKI 250
Query: 116 F-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K++ L+ LG +FDT+ + DLT++E NEFI R+K +N LP+ +S
Sbjct: 251 ATKQMVAGLRLLGFDKVFDTNFAADLTIMEEANEFIERFK---------NNGKLPLFTSC 301
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E +I +SS KSPQQ GA K + KLG +++ V+VMPC K
Sbjct: 302 SPGWVKFLEHNYPEFI-DNLSSCKSPQQMFGAIAKTYYANKLGISKEDMVVVSVMPCTAK 360
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R + +G +VD VLTT E+ + +L ++ + D+
Sbjct: 361 KFERVRPEI-------------KG----DVDYVLTTRELAKMFKLAGIDLLNVPPEEYDE 403
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++ G++GG E R A + + GK +E L+F+ +R + +E +E+
Sbjct: 404 PLGISSGAGAIF---GATGGVMEAALRTAYEVITGKELE-KLDFEAVRGIEGIKEATVEI 459
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G LK A+ G N + ++ +K + +Y FVE MACP GC+ GGGQ P +
Sbjct: 460 DGIN-LKVAVVNGLGNARKVLEMIKSGEKEYHFVEFMACPGGCIGGGGQPIPTNSEI--- 515
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L+K ++ IY ++ + +NP ++ LY+E+L +P SEK+ + +HT Y
Sbjct: 516 LLKRMQAIYEVDRSLPIRKSHENPAIKILYEEFLGEPLSEKSHELLHTTY 565
>gi|374324426|ref|YP_005077555.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus terrae HPL-003]
gi|357203435|gb|AET61332.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus terrae HPL-003]
Length = 446
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 78 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 134
SL++ + K G+ I+ +P R S+AE FG+ P K+ L+ LG ++DT
Sbjct: 60 SLNKVTDMMTKPGQFRIVQCAPAIRVSIAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 118
Query: 135 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 194
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 119 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 168
Query: 195 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 254
SS KSP Q +GA +K + Q P IY V +MPC K+ E R + + + Y
Sbjct: 169 SSCKSPMQMLGALVKTYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------EADGY 222
Query: 255 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 314
RD VD VLTT E+ I+ ++F +L + D L G ++GV +GG
Sbjct: 223 RD-------VDEVLTTRELAYWIKESGIDFMSLPDEEFDSPLGRYSGAGSIFGV---TGG 272
Query: 315 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 374
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 273 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYGLL 331
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENVMLA--DP 431
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + L
Sbjct: 332 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAGLQVRKS 391
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+NP + LYDE+L +P + +HT +
Sbjct: 392 HENPHIIKLYDEFLGEPLGHVSHHLLHTTFQ 422
>gi|118579914|ref|YP_901164.1| hydrogenase, Fe-only [Pelobacter propionicus DSM 2379]
gi|118502624|gb|ABK99106.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Pelobacter propionicus DSM 2379]
Length = 601
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/415 (28%), Positives = 198/415 (47%), Gaps = 37/415 (8%)
Query: 53 KISLKDCLACSGC--ITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI 110
KI +C+ C C + ++ L+ + + + S +K + +++P R ++ E FG+
Sbjct: 187 KIGEVECVNCGQCTIVCPTGSLCLKPEMEEVWKSLTDKQTYTVAAIAPAVRVAIGEIFGM 246
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
V ++ LK LG ++D S + DLT IE +EF+ R + LP
Sbjct: 247 EAGAVSTGQMLAALKLLGFDQVYDVSFAADLTTIEEGSEFLER---------RSAGVRLP 297
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+S CP W+ Y E +++ +S+ KSP Q GA +K + + + + V++
Sbjct: 298 HFTSCCPAWVKYVE-HFHPHLIGNLSTCKSPLQMFGALLKDRLPDLVQIPRERVKVVSIT 356
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA R +F IP++D V+TT E+ +I+ + F L
Sbjct: 357 PCTAKKFEAKRPEFTHD-------------GIPDIDHVITTIELGRMIKAAGIQFNDLSP 403
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFRE 348
D G ++G +SGG E V R + L K + L+F +R S RE
Sbjct: 404 ESFDMPFGFSTSAGVIFG---NSGGVTEAVLRFTMEKLSNKPL-AKLDFVEVRGESGIRE 459
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++ G T+ +FA+ +G +N + ++ K+ KC Y FVEVMACP GC+NGGGQ P
Sbjct: 460 ASFDIGGSTI-RFAIVHGLKNAKMLITKIAAGKCAYDFVEVMACPQGCINGGGQ--PVNH 516
Query: 409 QSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++T ++ M L P N +V Y ++L G KA++ +HT Y
Sbjct: 517 VYNYKQLRT-RGLFTAGKMFHLHKPQDNIMVNECYQQYLGDVGGAKAQQLLHTHY 570
>gi|45185025|ref|NP_982742.1| ABL205Cp [Ashbya gossypii ATCC 10895]
gi|74695629|sp|Q75E78.1|NAR1_ASHGO RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|44980661|gb|AAS50566.1| ABL205Cp [Ashbya gossypii ATCC 10895]
Length = 451
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 206/431 (47%), Gaps = 78/431 (18%)
Query: 1 MSEKFSPTLRIGDLSDFIAPSQNCVVSLKKA-TFKNPDKPQVSTSSKQQAEPVKISLKDC 59
MS K S + DL+DFI CV + T D+ Q+A V ISL+DC
Sbjct: 1 MSAKLSES----DLNDFIGAQVACVKPTRTLHTADEGDEALEVGKEPQEATKVSISLQDC 56
Query: 60 LACSGCITSAETVMLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQVFK 117
LAC+GCITS+E ++L +QS FL KA+ +S++PQSR SLA+HFG+S ++ +
Sbjct: 57 LACAGCITSSEEILLSRQSHGVFLEAWRSLAPKALAVSVAPQSRLSLAQHFGLSVAELDQ 116
Query: 118 KLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
L+ L S G K + T R+L++ + + R +Q + P+L S CP
Sbjct: 117 CLSGVLGSYFGAKYVVGTQLGRELSVQQTNARLVERKQQGVQG---------PLLCSVCP 167
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
G++ YAEK ++PY+ VKSPQQ GA + H IYH+++MPC+DKKL
Sbjct: 168 GFVLYAEKT-KPGLVPYMLDVKSPQQITGALL--HAADP------NIYHLSLMPCFDKKL 218
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE---VLDLIQLKAVNFEALEESPLD 293
EAARED EVD VLT E +LD +QL +F A P+
Sbjct: 219 EAAREDCAR-----------------EVDCVLTPREFVALLDELQLDLHSF-AGAAVPIA 260
Query: 294 KMLTNVDDE--GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 351
++ D SSGGYA H + G I + RN+D E L
Sbjct: 261 QLTPPGWDPRVSWCSSAGSSSGGYAYQYILHMQRLHPGSTI----ATQAGRNADLLEHRL 316
Query: 352 EVEGKTLLKFA-LCYGFQNLQNIVRK------------VKMR------------KCDYQF 386
LL A YGF+N+QN+VRK V+ R C+ F
Sbjct: 317 LAPSGVLLASAGELYGFRNIQNLVRKLLSPATKRSAKVVRRRLPQASPAPPATDPCNADF 376
Query: 387 VEVMACPSGCL 397
+EVMACPSGC+
Sbjct: 377 IEVMACPSGCI 387
>gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
Length = 666
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 193/409 (47%), Gaps = 39/409 (9%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISL-SPQSRASLAEHFGI-SPLQ 114
+C+ C C+ T L + +D+ + K V+I + +P R+++ E F + S L
Sbjct: 186 ECVYCGQCVAYCPTGALSIRNDIDKLYRVLKSKKKVVIGMIAPAVRSAIQEEFKLDSDLF 245
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+ +L TFLK LG +F+ DL E +EF+ R ++ ++ LP +S
Sbjct: 246 IAGRLNTFLKMLGFSKVFEVPFGADLVAYEEAHEFLDRLEKGEK---------LPQFTSC 296
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ Y E+ +YI +S+VKSPQQ +G+ IK +++G ++IY V++MPC K
Sbjct: 297 CPAWVKYVEEFYPTYI-DNLSTVKSPQQAMGSVIKEIYSKEIGIPKEDIYLVSIMPCTSK 355
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA RE+ +G+ VD V+TT E+ +I+ ++ +L+ P DK
Sbjct: 356 KFEAEREEH-------------KGV----VDLVITTKELAQMIKASGIDISSLKPEPFDK 398
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 354
G +G G G V H K V E +E R +E+E
Sbjct: 399 PFNLYSQGGLDFGKTGGVLGTVLAVINHKVK--IKNVKEEEIE------KGIRLFNVELE 450
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
++ + + ++R +K + +EVMAC GC+ GGGQ P + +
Sbjct: 451 NGRNVRAMAVHSLGKAKRVLRDIKEGILNVDIIEVMACSFGCIGGGGQPYPNDSKVRQRR 510
Query: 415 IKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
K L + N + P +NP + LY+++LE P S K + +HT Y P
Sbjct: 511 AKILSDMVNIN-PITSPQENPYLMELYEKYLEHPLSHKTHEILHTSYSP 558
>gi|168211789|ref|ZP_02637414.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
gi|170710254|gb|EDT22436.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
Length = 696
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 213/425 (50%), Gaps = 37/425 (8%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDAISY--KDKIVIVSTSPAVRVSLGEEFNMNDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHQEILDHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE ++++ Y E + ++D V+TT EV + K ++F +LE+S DK+
Sbjct: 229 FEIKRE----EMNASGRYYGIENMR--DMDYVITTREVAIWAKEKGIDFNSLEDSNFDKL 282
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFRE 348
+ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 283 MGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFKI 339
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 340 NDLEI------NIAVIYGTENASKFISKMKNEDKKYHFIEVMTCPGGCIGGGGQPKDKKF 393
Query: 409 QSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
+ K K ++ +Y N+ L ++N ++ LY+E+ E+P S A++ +HT Y K
Sbjct: 394 EGDKLREKRIDGLYKRDSNMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTTYFDRSK 453
Query: 467 SITAQ 471
+ +
Sbjct: 454 DLGGE 458
>gi|73748099|ref|YP_307338.1| [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp. CBDB1]
gi|73659815|emb|CAI82422.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp.
CBDB1]
Length = 573
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 211/416 (50%), Gaps = 41/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K+ LP ++S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTILEEGSELVERVKEG---------GVLPQITSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +L+E P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + L V+
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVD 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G LK A+ +G N + ++ ++K Y F+E+MACP GC+ GGGQ P + L
Sbjct: 463 GLE-LKVAVAHGLGNARALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSL 517
Query: 415 IKTL-ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
K E +Y E+ + NP + +Y ++LE+P +++ K +HTEY PVV
Sbjct: 518 KKKRGEALYEEDRNMPKRCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|373489099|ref|ZP_09579762.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
gi|372004575|gb|EHP05214.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
Length = 531
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 206/412 (50%), Gaps = 28/412 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C+ C C T + E L + + K VI+ +P +R L E FG+ + V
Sbjct: 111 CIHCGQCTLWCPTGAIAEADDRTRVLQALKDPTKVVIVQTAPSTRVGLGEEFGMPAGSWV 170
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K L+ LG +FDT+ + DLT++E +E I R +S + LP L+S C
Sbjct: 171 EGKQVAALRRLGFSRVFDTNFTADLTIMEEGSELIERLTG-------KSEAPLPQLTSCC 223
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + +P +S+ KSPQQ +GA +K + +K G P I+ V+VMPC KK
Sbjct: 224 PGWVKFVEYYYPEW-MPNLSTAKSPQQMLGAVLKTYYAKKTGIDPRTIFSVSVMPCTAKK 282
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E+AR +F ++ ++++GL ++D+VLT E+ L++ ++F +L E D +
Sbjct: 283 FESARPEF----NAAGRYWKNDGLR--DIDAVLTVRELALLMKEAGLDFASLPEESYDSL 336
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRN-SDFREVALEV 353
L ++ GS+GG E R A + G K + +R S +E +L+V
Sbjct: 337 LGEGSGAALIF---GSTGGVMEAAVRTAYHAVTGQKAPALAFDLAPVRGLSGVKEASLDV 393
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + A+ +G N + ++ +VK Y F+EVM+CP GG P+ P +
Sbjct: 394 PGHGKVCVAVAHGLHNARTLLDRVKAGTARYDFIEVMSCPG--GCIGGGGMPRSSVPPAD 451
Query: 414 LIK--TLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + ++ +++ L + +N ++ LY +L +P S + + +HT+Y
Sbjct: 452 DVRRSRIRSLQVKDAAGTLRESHENQEIKELYRSFLGRPLSHLSHELLHTDY 503
>gi|160878248|ref|YP_001557216.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
gi|160426914|gb|ABX40477.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
Length = 567
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 192/399 (48%), Gaps = 32/399 (8%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQS--LDEFLSNINKGKAVIISLSPQSRASLAEHFGI 110
KI+ +C+ C C T + +S D + + N K V++ ++P R +L E F +
Sbjct: 183 KIAETNCVNCGQCAAVCPTAAITVKSDLKDVWKAIYNPKKRVVVQVAPAVRVALGEEFHM 242
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ V K+ L+ LG +IFDTS DLT++E E + + E + P
Sbjct: 243 KAGENVIGKIVAALRRLGFDAIFDTSVGADLTIMEESKELLKKL--------EAGENKYP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+ +S CPGWI YAE + +LPYIS+ KSP + GA IK H E V +M
Sbjct: 295 LFTSCCPGWIRYAETK-HKELLPYISTCKSPMEMFGAVIKEHFKGLDSTEGVETVSVAIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA+RE+F +IP+VD V+TT E++ +I+ + FE +E
Sbjct: 354 PCSAKKYEASREEFKRN-------------DIPDVDYVITTIELVKMIKEIGIQFEEIEP 400
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
D + G ++GV +GG E R K ++ +EF +R + +V
Sbjct: 401 EAPDMPFSLYSGAGVIFGV---TGGVTEAAVRRVVADKSPKALK-DIEFLGLRGMEGVKV 456
Query: 350 A-LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
L+VE ++++ + G N + ++ K++ + + FVEVMACP GC+ G GQ
Sbjct: 457 CELQVEENSIVRIGVVSGLANAEALIEKIESGEEHFDFVEVMACPGGCIAGAGQPFSHKE 516
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 447
+ + + + + + +NPL+ SLY+ L+
Sbjct: 517 EKNARALGMYKADKVSQIKRCE--ENPLMLSLYNGMLKH 553
>gi|357634717|ref|ZP_09132595.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
gi|357583271|gb|EHJ48604.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
Length = 585
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 208/422 (49%), Gaps = 35/422 (8%)
Query: 49 AEPVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A +++L D C C C+ ++E E L + N K VI+ +P RA+L
Sbjct: 184 APAFEMNLADTVCTNCGQCVAVCPVGALVEHDHTREVLDALANPDKVVIVQTAPAVRAAL 243
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E GI+P V K+ L+ LG IFDT + DLT++E +EF+ R + D
Sbjct: 244 GEDLGIAPGTSVTGKMAAALRRLGFDHIFDTDFAADLTIMEEGSEFLDRLTRHLNGD--- 300
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LP+L+S CPGW+ + E Q +L S+ KSPQQ GA K + LG D++
Sbjct: 301 QTAKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFGAIAKTYYADLLGIPRDKL 359
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK E AR +F + P+VD V++T E+ LI+L ++
Sbjct: 360 VVVSVMPCLAKKYERARPEFAVDGN-------------PDVDVVISTRELARLIKLMNID 406
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F L + D L ++GV +GG E R A + G+ +E +EF+++R
Sbjct: 407 FAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYELATGETLE-KVEFESVRG 462
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ + A+ G L + +G N + ++ +V+ + + +EVMACP GC+ GGGQ
Sbjct: 463 MEGVKRAVVKVGPHELVIGVAHGLGNARKLLERVREGE-TFHAIEVMACPGGCIGGGGQ- 520
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHT 459
EL+K L T L + P + NP + LY+++L +P SEK+ +HT
Sbjct: 521 --PYHHGDVELLK-LRTQVLYDEDAGKPLRKSHQNPYIIELYEKFLGKPLSEKSHHLLHT 577
Query: 460 EY 461
Y
Sbjct: 578 HY 579
>gi|282857806|ref|ZP_06267014.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
[Pyramidobacter piscolens W5455]
gi|282584367|gb|EFB89727.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
[Pyramidobacter piscolens W5455]
Length = 577
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 204/434 (47%), Gaps = 43/434 (9%)
Query: 41 VSTSSKQQAEPVKISL---KDCLACSGCITSAETVML-EKQSLDEFLSNINKG-KAVIIS 95
V+T +K + ++ DC C CIT L E+ + L I+ K V++
Sbjct: 167 VNTGAKTTVDVARVYRLEDADCALCGQCITHCPVGALHERDDTQKVLDAIDDPEKIVLVQ 226
Query: 96 LSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
++P R + E FG+ P + +L L+ +G +FDT+ S DLT++E +EF+ R K
Sbjct: 227 IAPAIRTAWGEEFGMKPGEATVTRLAAALRLVGFDYVFDTNFSADLTIMEEGSEFVERLK 286
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
R PM +S CPGWI + + ++ +SS KSPQQ GA K Q
Sbjct: 287 H-------RDREKFPMFTSCCPGWIRFVKSHWPQFV-GQLSSAKSPQQMFGAVAKSWYAQ 338
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
LG P I+ V++MPC KK E A D +VD LTT EV
Sbjct: 339 TLGVDPSRIFSVSIMPCLAKKAECALPGM------------DGAGAGQDVDVALTTREVS 386
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
LI+ + + L + LD L G ++G ++GG E R A + GK E
Sbjct: 387 RLIRSLQIQPQDLADEELDMPLGVGSGAGAIFG---ATGGVMEAALRSAFFLVTGKNPEP 443
Query: 335 HLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 393
FK++R D ++E ++ G T LK A+ G N ++ + Y FVEVMACP
Sbjct: 444 D-AFKSVRGMDGWKEATFDIAG-TALKVAVVNGLGNADKLLAALDRGDVRYDFVEVMACP 501
Query: 394 SGCLNGGGQ-----IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQP 448
GC+ GGGQ ++ P ++P TL I + L +NP + + Y ++L P
Sbjct: 502 GGCVGGGGQPIHDRVEMAPQRAP-----TLYDID-RGMELRFSHENPSILACYQQFLGAP 555
Query: 449 GSEKAKKHVHTEYH 462
SEKA + +HT YH
Sbjct: 556 LSEKAHRLLHTTYH 569
>gi|409197406|ref|ZP_11226069.1| Fe-only hydrogenase, catalytic subunit alpha [Marinilabilia
salmonicolor JCM 21150]
Length = 596
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 211/421 (50%), Gaps = 38/421 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T + EK ++E + I N K V++ +P R +L E + P ++
Sbjct: 194 CTNCGQCVNRCPTGALTEKTYINEVWNAIDNSDKYVVVQTAPAVRIALGEALDMDPGEIV 253
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG ++ DT S DLT+IE NE + R K+ + D+ S+ +PM +S
Sbjct: 254 TGKMVAALRRLGFNAVLDTDWSADLTIIEEGNELLQRLKRVLK--DKESDVKIPMTTSCS 311
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E + L ++S+ KSPQQ GA K K+G P ++ V+VMPC KK
Sbjct: 312 PGWIKFIEHTFPDF-LEHLSTAKSPQQMFGALAKTFYANKIGVDPSDMVSVSVMPCTAKK 370
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + Y+D VD V+TT E+ +++ ++F++L + D +
Sbjct: 371 FEANRPEM------RASGYQD-------VDFVVTTRELAMMVKQAGIDFKSLPDDDYDSI 417
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + + G+ + L +R + RE +L++
Sbjct: 418 MGESTGAGVIF---GATGGVMEAALRTVYEVVTGREVPFDGLNILPVRGMEEVREASLKI 474
Query: 354 EG---------KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404
E +K + +G N + ++ KVK + DY F+E+MACP GCL GGGQ
Sbjct: 475 ENPLPEWDFLDGVEVKTCVAHGLSNAKKVMEKVKNGEADYHFIEIMACPGGCLGGGGQPL 534
Query: 405 PKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P SP+ K E IY E+ + +NP + +Y+E+L +P K+ + +HT Y
Sbjct: 535 P---TSPEIRKKRAEAIYREDAGKKIRKSHENPEIIQIYEEFLVEPLGHKSHELLHTTYT 591
Query: 463 P 463
P
Sbjct: 592 P 592
>gi|410466768|ref|ZP_11319352.1| iron only hydrogenase large subunit [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409980732|gb|EKO37419.1| iron only hydrogenase large subunit [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 475
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 176/389 (45%), Gaps = 34/389 (8%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 145
+ + ++ +P R +LAE FG++P + KL L+ LG ++DT+ + D+T++E
Sbjct: 110 DPSRVAMVQCAPAVRVTLAEEFGLAPGSLTPGKLAAGLRRLGFAVVYDTTFAADVTVMEE 169
Query: 146 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 205
E +AR + LP+ +S CP W+ + E ++P++SS KSPQQ G
Sbjct: 170 SAELLARIAE---------GGRLPLFTSCCPAWVRHVETAW-PELIPHLSSCKSPQQMAG 219
Query: 206 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 265
A K + GF P + V+VMPC KK EAAR + R ++P+VD
Sbjct: 220 ALFKSYAASLDGFDPAAVASVSVMPCTAKKHEAARPEL-----------RSGPADLPDVD 268
Query: 266 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 325
+V+T E+ ++ V+F AL + P D L G ++G A GG E R A
Sbjct: 269 AVVTVAELAAWLKEAGVDFAALPDEPFDAPLGRYSGAGVIFGAA---GGVMEAALRTAV- 324
Query: 326 TLFGKVIEGHLEFKTI----RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 381
L G+ E I E+ G+ L + G N+ ++ V
Sbjct: 325 ALCGEGRESANPQSGIVFSPAGPGVARAEFELAGRKLAAVTV-SGLANVGPLLEAVAAGT 383
Query: 382 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN---VMLADPFKNPLVR 438
D+QF+EVM CP GC+ GGG K PG I + + + NP V
Sbjct: 384 ADFQFMEVMCCPGGCVAGGGTPKLLPGVDVAAAIGARRQALCAHDRALPVRAAHANPAVT 443
Query: 439 SLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
LY +LE+P S + + +HT Y K
Sbjct: 444 ELYAAFLERPLSHLSHELLHTVYGGAAKG 472
>gi|110801841|ref|YP_698262.1| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101]
gi|110682342|gb|ABG85712.1| [Fe] hydrogenase [Clostridium perfringens SM101]
Length = 696
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 213/411 (51%), Gaps = 29/411 (7%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + +++ +++ K K VI+S SP R SL E F +
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVEDAIND--KDKIVIVSTSPAVRVSLGEEFNMDDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG K + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFKYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI YAE IL +IS+ KSP G TIK + + +G P +I +V + PC KK
Sbjct: 170 PAWIKYAE-TFHPEILDHISTSKSPIGMQGPTIKTYFAKNMGIDPSKIINVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRN-SDFREVALE 352
++ G ++ ++GG E R A K + K + + + +R D RE + +
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKKEPPKDFYDLEAVRGMEDIREASFK 338
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+ + A+ YG +N + K+K Y FVEVM CP GC+ GGGQ K K Q K
Sbjct: 339 I-NDLDINVAVIYGTENASKFISKMKDSDKKYHFVEVMTCPGGCIGGGGQPKDKNLQGDK 397
Query: 413 ELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K ++ +Y + + L +N +++LY E+ +P S+ A+K +HT Y
Sbjct: 398 LREKRIDGLYRRDSSMKLKVSCENEEIKNLYKEFYGKPLSDLAEKMLHTTY 448
>gi|156121281|ref|NP_001095788.1| nuclear prelamin A recognition factor [Bos taurus]
gi|151553625|gb|AAI48984.1| NARF protein [Bos taurus]
gi|296476152|tpg|DAA18267.1| TPA: nuclear prelamin A recognition factor [Bos taurus]
Length = 275
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 133/229 (58%), Gaps = 24/229 (10%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLS--NINKG------KAVIISLSPQSRAS 103
KI L DCLAC C+++ E + + +Q+ +F N+NK K + +SL PQS
Sbjct: 46 AKIFLSDCLACDSCVSAEEGIQVSQQNAKDFFQVLNLNKKCDTSEHKVLAVSLCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ R++Q E +
Sbjct: 106 FAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRFRQHNEEE--- 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I
Sbjct: 163 --PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKI 220
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE 272
+HV V PCYDKKLEA +ED + T D VLT+GE
Sbjct: 221 FHVIVAPCYDKKLEALQEDVLTASRGSRGT-----------DCVLTSGE 258
>gi|242277840|ref|YP_002989969.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
gi|242120734|gb|ACS78430.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
Length = 461
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 33/374 (8%)
Query: 93 IISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 151
++ +P R S+AE +G++P + +L L+ LG +++DT + D+T++E +E +
Sbjct: 109 MVQCAPAVRTSIAEEYGLAPGTLTPGQLAASLRRLGFDAVYDTIFAADVTIMEESSELLD 168
Query: 152 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 211
R K S ++PM +S CPGW+ Y E + ++SS KSPQQ GA K +
Sbjct: 169 RIK---------SGGTMPMFTSCCPGWVRYMETAW-PDLTDHLSSCKSPQQMAGALFKTY 218
Query: 212 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 271
+ G + I V VMPC KK EAAR + Q Q++ VD+VLT
Sbjct: 219 GAEIAGVGAESIASVAVMPCTAKKHEAARPEM--QSSGQQD-----------VDAVLTVT 265
Query: 272 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK- 330
E+ +++ K +N + E D + G ++G ++GG E R A GK
Sbjct: 266 ELAAMLKAKGINLAEMPEEDFDVPMGLYSGAGVIFG---ATGGVMEAALRTAIAVTSGKD 322
Query: 331 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 390
V E + F R A++V GKT+ + + G N ++ ++ K D+ F+EVM
Sbjct: 323 VCESGVVFSPA-GEGIRRAAIDVAGKTV-RAVIVSGLANAAPLLEDIRAGKADFDFMEVM 380
Query: 391 ACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQ 447
C GC+ GGGQ K PG E+I K ++ + L KN V +LYD++L +
Sbjct: 381 CCHGGCVAGGGQPKLLPGIDRDEVIAKRRGGLHRHDKELPVRASHKNEAVTALYDKYLGE 440
Query: 448 PGSEKAKKHVHTEY 461
P ++ + +HT Y
Sbjct: 441 PLGHRSHELLHTHY 454
>gi|164686674|ref|ZP_02210702.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
16795]
gi|164604064|gb|EDQ97529.1| hydrogenase, Fe-only [Clostridium bartlettii DSM 16795]
Length = 455
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/465 (28%), Positives = 215/465 (46%), Gaps = 80/465 (17%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSN--------------- 85
VS + + +P +I C+ C C+ ++ +EF++N
Sbjct: 22 VSAITGEPHKPQEIDADKCVICGQCVQVCKSYASIIDHGEEFVTNKKQERKIPDVINEPL 81
Query: 86 --------INKGKAVI--------ISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGV 128
I+K KA + + +P R +L E FG+ + K+ LK+L
Sbjct: 82 FAANNVCDIDKVKAALKDPSKITMVQCAPAVRVALGEDFGMELGSLTPGKMAAALKALNF 141
Query: 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188
I+DT+ + DLT++E NE I R + +LPM +S CP W+ + E
Sbjct: 142 DKIYDTNFAADLTIMEEGNELIKRVTEG---------GTLPMFTSCCPAWVKFLETNFPE 192
Query: 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 248
+ ++SS KSPQQ GA K + + +IY +++MPC KK E R ++D
Sbjct: 193 -LTDHLSSCKSPQQMAGAVFKTYGAKVNKIDAKDIYSISIMPCTCKKFECDRP----EMD 247
Query: 249 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 308
S YRD VD+VLTT E+ LI+ ++F +LEE P + L G ++GV
Sbjct: 248 SS--GYRD-------VDAVLTTRELAYLIKDAGIDFNSLEEIPFESPLGVYTGAGTIFGV 298
Query: 309 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGF 367
+GG E R A + + G+ I ++ +R D FR +++ G+ LK + G
Sbjct: 299 ---TGGVMEAALRTAYEVITGEEIPS-IDIPAVRGRDGFRTTEVQI-GELTLKVGVVTGL 353
Query: 368 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLE-- 424
+N+ I+ +K K D F+EVM CP GC++GGGQ PK L++ ET Y
Sbjct: 354 KNVVPILEDLKSGKLDLHFIEVMTCPVGCVSGGGQ--------PKLLLEEYRETAYDNRI 405
Query: 425 --------NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
N+ L NP + +Y ++L++P + + +HT+Y
Sbjct: 406 KATYTHDANLPLRKSHTNPEITKIYSKFLKEPLGKVSHSLLHTKY 450
>gi|317133223|ref|YP_004092537.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
gi|315471202|gb|ADU27806.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
Length = 580
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 208/415 (50%), Gaps = 34/415 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDE-FLSNINKGKAVIISLSPQSRASLAEHFGI 110
K+ DC C CIT L E+ D+ F + + ++ ++P RA+ E G+
Sbjct: 182 KMEESDCTLCGQCITHCPVGALRERDDTDKAFAALADPDTITVVQIAPAVRAAWGESLGL 241
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
Q K+L L+ +G + IFDT+ S DLT++E +EF+A+ + R N + P
Sbjct: 242 PREQATAKRLVAALRKIGFRYIFDTTFSADLTIMEEGSEFLAKLRN-------RENETFP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + Q + +S+ KSPQQ GA K + + L P+ I ++VM
Sbjct: 295 MFTSCCPGWVRFLKSQYPDMVR-QLSTAKSPQQMFGAITKSYYAKLLDVEPERICSISVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EAA D P+VD VLTT E+ +I+ + ++ L E
Sbjct: 354 PCLAKKQEAALPTM------------DTAGAGPDVDIVLTTREIDRMIRAEDIHPGELPE 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D+ L G ++G ++GG E R A + GK E F +R D ++E
Sbjct: 402 EEFDQPLGVGSGAGVIFG---ATGGVMEAALRSAYYLVTGKNPEPD-AFGNVRGMDGWKE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
A+++ G T+ + A+ G N + +V ++ Y FVE+MACP GC GGGQ P
Sbjct: 458 AAIDIAGTTV-RVAVASGLGNARRLVEALRKGDVQYDFVEIMACPGGCSGGGGQ--PIAE 514
Query: 409 QSPKELIKTLETIY-LENV-MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ ++ ET+Y L+N+ L +NP + +Y ++L++P S +A + +HT +
Sbjct: 515 GEERAGVRA-ETLYGLDNISALRFSHENPSIVQVYRDYLDKPLSHRAHELLHTAH 568
>gi|146416741|ref|XP_001484340.1| hypothetical protein PGUG_03721 [Meyerozyma guilliermondii ATCC
6260]
Length = 531
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 214/498 (42%), Gaps = 142/498 (28%)
Query: 5 FSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQA--------------- 49
S L DL+DFI+P C+ KP V+ + Q+A
Sbjct: 1 MSALLSADDLNDFISPGIACI------------KPTVTENRSQEALEYGEVEIQIDENGK 48
Query: 50 --------------EPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK----GKA 91
P +ISL DCLACSGCITSAE +++ + S +E + + + K
Sbjct: 49 PLEISKIDGATKNLSPAQISLADCLACSGCITSAEEILVAQHSHNELIKALKEKKTNNKI 108
Query: 92 VIISLSPQSRASLAEHFGISPLQVFKKLTTFL-KSLGVKSIFDTSCSRDLTLIEACNEFI 150
+ S+S Q+RASLA + + + + L L +G + T R L+LI I
Sbjct: 109 FVASISHQARASLATAYYMKVSDIDRLLVDLLVNQMGFTYVVGTGLGRKLSLINELQSVI 168
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R + + P+LSS CPGW+ YAEK ++L IS KSPQQ G +K
Sbjct: 169 ERKEHGFQG---------PILSSICPGWVLYAEKT-HPHVLLRISDTKSPQQITGCLLKS 218
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+L D+IYH+++MPC+DKKLE+AR + +D L + +VD VLT
Sbjct: 219 LTAHQLEVERDQIYHLSIMPCFDKKLESARPE------------QDPLLVLNDVDCVLTP 266
Query: 271 GEVLDLI-QLK---AVNFEALEESPLDKMLTNVDDEGHLY-GVAGSSGGYAETVFRHAAK 325
E++ L+ + K ++ F+AL S LT+ LY A ++ Y E + +
Sbjct: 267 KELVTLLDECKDKFSLTFDALSHS--SGSLTD------LYQSCAPANWPYVELSWSSDSG 318
Query: 326 TLFGKVIEGH----------------------LEFKTIRNSDFREVALEVEGKTLLKFAL 363
+L G + LE RN D E+ L + A+
Sbjct: 319 SLSGGYGYNYLQLLQLHLCLRDPQQYQPQNFRLESVAGRNKDIYELRLVYNDNQVASSAI 378
Query: 364 CYGFQNLQNIVRKVK-------------------------------------MRKCDYQF 386
GF+N+QN+VRK+K KCDY
Sbjct: 379 VNGFRNIQNLVRKLKPTSSTTTTKTNPLVARRKARLSSKRSESGAQDVQQADASKCDY-- 436
Query: 387 VEVMACPSGCLNGGGQIK 404
VE+MACP+GC+NGGGQI
Sbjct: 437 VEIMACPNGCINGGGQIN 454
>gi|300854909|ref|YP_003779893.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
gi|300435024|gb|ADK14791.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
Length = 457
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 190/385 (49%), Gaps = 54/385 (14%)
Query: 93 IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
++ +P R ++AE FG+ PL K+ L+ LG I+DT+ + DLT++E +E I
Sbjct: 111 MVQCAPAVRVAIAEEFGM-PLGSLTPGKMAAALRELGFDRIYDTNFAADLTIMEEVSELI 169
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R + LPM +S CP W+ + E+ ++P++SS KSPQQ GA +K
Sbjct: 170 KRVTE---------GGVLPMFTSCCPAWVKFIEQDYPE-LIPHLSSCKSPQQMEGALLKT 219
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ Q G +IY V+VMPC KK E R + +D G + +VD+V+TT
Sbjct: 220 YGAQVDGVDAGKIYSVSVMPCICKKFECERPEM-----------KDSGYQ--DVDAVITT 266
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
E+ LI+ ++F L E DK L G ++ ++GG E R A K + +
Sbjct: 267 RELAQLIKDAGIDFNGLPEKEFDKPLGTYSGAGTIFC---ATGGVMEAALRTAYKLITKE 323
Query: 331 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
I ++ K IR + R ++V G LK A+ G +N+ ++ +K K D+ F+EV
Sbjct: 324 EIP-DVDLKFIRGGEGVRSSEIKV-GDLTLKVAVVAGLKNVVPVLEAIKTGKADFHFIEV 381
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELI----------KTLET-IYLENVMLADPFKNPLVR 438
M CP GC++GGGQ PK LI +T T ++ EN+ NP ++
Sbjct: 382 MTCPVGCVSGGGQ--------PKVLIPDEKADAYTNRTCSTYVHDENMEYRKSHDNPEIQ 433
Query: 439 SLYDEWLEQPGSEKAKKHVHTEYHP 463
+Y E+L + + +HT Y P
Sbjct: 434 KIYKEFLVE---DNIHHLLHTTYTP 455
>gi|386391238|ref|ZP_10076019.1| hydrogenase, Fe-only [Desulfovibrio sp. U5L]
gi|385732116|gb|EIG52314.1| hydrogenase, Fe-only [Desulfovibrio sp. U5L]
Length = 585
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 208/420 (49%), Gaps = 31/420 (7%)
Query: 49 AEPVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A +++L D C C C+ ++E E L + N K VI+ +P RA+L
Sbjct: 184 APAFEMNLADTVCTNCGQCVAVCPVGALVEHDHTREVLDALANPDKVVIVQTAPAVRAAL 243
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E GI+P V K+ L+ LG IFDT + DLT++E +EF+ R + D
Sbjct: 244 GEDLGIAPGTSVTGKMAAALRRLGFDHIFDTDFAADLTIMEEGSEFLDRLTRHLNGD--- 300
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LP+L+S CPGW+ + E Q +L S+ KSPQQ GA K + LG D++
Sbjct: 301 QTAKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFGAIAKTYYADLLGIPRDKL 359
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK E AR + F +D P+VD V++T E+ LI+L ++
Sbjct: 360 VVVSVMPCLAKKYERARPE--FSVDGN-----------PDVDVVISTRELARLIKLMNID 406
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F L + D L ++GV +GG E R A + G+ +E +EF+ +R
Sbjct: 407 FAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYELATGETLE-KVEFENVRG 462
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ + A+ G L + +G N + ++ +V+ + + +EVMACP GC+ GGGQ
Sbjct: 463 MEGVKRAVVKVGPHELVIGVAHGLGNARKLLERVRAGEV-FHAIEVMACPGGCIGGGGQ- 520
Query: 404 KPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + L + +Y E+ L +NP + LY+++L +P SE++ +HT Y
Sbjct: 521 -PYHHGDVELLKLRTQVLYDEDAGKPLRKSHQNPYIIELYEKFLGKPLSERSHHLLHTHY 579
>gi|338729907|ref|YP_004659299.1| hydrogenase large subunit domain-containing protein [Thermotoga
thermarum DSM 5069]
gi|335364258|gb|AEH50203.1| hydrogenase large subunit domain protein [Thermotoga thermarum DSM
5069]
Length = 660
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 203/414 (49%), Gaps = 42/414 (10%)
Query: 53 KISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
K++ +C+ C C T L + +++ + +GK VI ++P R+++ E F +
Sbjct: 180 KLANTECVFCGQCAAYCPTGALTFRNDVEKVYKALKEGKYVIGMIAPAVRSAIQEEFDLG 239
Query: 112 PLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
V +L + LK +G K +FD S + DL E +EF+ R ++ ++ LP+
Sbjct: 240 DDYVTAGRLVSILKMVGFKKVFDVSFAADLVAYEEAHEFLERIEKGEK---------LPL 290
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CP W+ +AE+ Y L +ISSVKSPQQ +G IK + +++G R ++I V++MP
Sbjct: 291 FTSCCPAWVKFAEQFYPEY-LSHISSVKSPQQALGTVIKKYYAKEIGVRLEDICLVSIMP 349
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA RE+ G+ VD VLTT E+ I+ +N + +E
Sbjct: 350 CTAKKFEAEREEHA-------------GI----VDVVLTTRELALFIKSTGINIKTVEPM 392
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVF--RHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
P D+ G +G G G +V + K + + +E + T+ +D
Sbjct: 393 PFDRPYGLSSQGGISFGKVGGVLGSVVSVIESKGIVKNVTQQQLEKFVALTTVELND--- 449
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
G+ + A+ G N + ++ K+K + VEVMAC GC+ GGGQ P
Sbjct: 450 ------GRKIYGIAVS-GLGNTKKVIEKIKNEELKADIVEVMACSYGCIGGGGQPYPNDS 502
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ + K + I +V+++ P +N + LY+++ E+P S +A + +HT Y
Sbjct: 503 RVREHRAKLHKAIVGTDVLIS-PTENYHMLELYNKYFEKPLSHEAHETLHTTYR 555
>gi|291561268|emb|CBL40067.1| hydrogenases, Fe-only [butyrate-producing bacterium SS3/4]
Length = 577
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 201/423 (47%), Gaps = 47/423 (11%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I DC C CIT L E+ ++ I NK K V+ ++P RA+ E G++
Sbjct: 183 IREADCALCGQCITHCPVGALSERDDTEKVWEAIENKDKIVVAQVAPAVRAAWGEELGLT 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +GV FDT S DLT++E EFI R+ + ER PM
Sbjct: 243 DEDAPVGKIFDALKRMGVNYAFDTVFSADLTIMEESTEFIKRFTSGELK--ER-----PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q Y++ Y+S+ KSPQQ GA +K + +KLG PD+I+ +++MP
Sbjct: 296 FTSCCPGWVRFVKTQF-PYMVNYLSTAKSPQQMFGAVMKTYFAEKLGVSPDQIFALSIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E + F + +VD+VLTT E++ +I+ + + L E
Sbjct: 355 CVAKKGEREMDLFYGEYAGH------------DVDAVLTTRELVKMIRSAHIRPDTLVEI 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
P D + G ++ G++GG E R A L G+ FK +R+ F+E A
Sbjct: 403 PGDSPMHAGTGAGVIF---GATGGVMEAALRTAYFALKGENPPAD-AFKAVRSGGFQENA 458
Query: 351 LEVE-----GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC-------LN 398
E G L A G N + ++++++ + Y FVEVMACP GC ++
Sbjct: 459 GVQEAEFANGDIKLHTAAVSGLGNTRRLLQQIERGEVHYDFVEVMACPGGCVGGGGQPIH 518
Query: 399 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
G ++ G+ L + Y +NP +R +Y ++ +P S KA +H
Sbjct: 519 DGEELAFARGRKLYALDAKADIRY--------SHENPDIREIYSDFFGKPMSHKAHMLLH 570
Query: 459 TEY 461
TE+
Sbjct: 571 TEH 573
>gi|371777621|ref|ZP_09483943.1| hydrogenase, Fe-only [Anaerophaga sp. HS1]
Length = 589
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 210/410 (51%), Gaps = 32/410 (7%)
Query: 59 CLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C C C+ T L ++ + + ++ K V++ +P RA+L E FG+ P V
Sbjct: 195 CTYCGQCVAVCPTGALTERDYTWKVIEALVDPQKTVVVQTAPAVRAALGEAFGMEPGTLV 254
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ + LK LG +FDT + DLT++E EF+ R + + D + LP+L+S C
Sbjct: 255 TGKMVSALKKLGFDYVFDTDFAADLTIMEEGTEFLDRLTRYLDGD---KSVKLPILTSCC 311
Query: 176 PGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
P W+ + E Q I +P S+ KSPQQ GA K + +KL + +++ V+VMPC K
Sbjct: 312 PAWVKFFEHQFPEMIDIP--STAKSPQQMFGAIAKSYFAKKLNKKREDLVVVSVMPCLAK 369
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+F D+ +V+ +TT E+ LI+ ++F +L++ D+
Sbjct: 370 KYECTREEFAINGDA-------------DVNVSITTRELARLIRNANIDFASLDDEDFDQ 416
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++ G++GG E R A + GK +E +EF+ +R + R+ ++
Sbjct: 417 PLGESTGAGVIF---GTTGGVIEAAVRTAYELHTGKHLE-KVEFEELRGMEGLRKATVDF 472
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G L + +G N + ++ V+ K ++ +E+MACP GC+ GGGQ P +
Sbjct: 473 DGMK-LNIGIAHGLGNARKLLEDVRAGKSEFHAIEIMACPGGCIGGGGQ--PYHHGNVDI 529
Query: 414 LIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K + IY E+ + +NP ++ LY E+L +P S+ + + +HT Y
Sbjct: 530 LKKRQKAIYREDAGKAIRKSHENPFIQELYSEFLGRPLSDLSHELLHTHY 579
>gi|309777113|ref|ZP_07672077.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 3_1_53]
gi|308915122|gb|EFP60898.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 3_1_53]
Length = 572
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 203/411 (49%), Gaps = 29/411 (7%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C C T + E Q + S I + K V+ SP R SL E FG+ P V
Sbjct: 58 CIHCGQCANVCPTGAITEIQDWMQVQSVIQDNSKKVVAITSPSVRVSLGEEFGMQPGSYV 117
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+++ L++LG +FDT+ + DLT++E +E I R + ++ LP +S C
Sbjct: 118 EEQMVGSLRALGFDYVFDTTFAADLTIMEEASELIERIQ---------TDKPLPQFTSCC 168
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E +LP IS+ KSP TIK +K P++IY V + PC KK
Sbjct: 169 PAWVKFVETYYPE-LLPNISTSKSPISMFAPTIKTWFAEKESLDPNDIYVVAITPCTAKK 227
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE+ S Y D + D V+TT E+ + ++ + ++ E +EES D +
Sbjct: 228 FEIVREEL-----SDAANYLDRE-SAQDCDRVVTTRELANWMRARNLDLEHIEESDYDAL 281
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R A L K L + + +R + R+ L +
Sbjct: 282 MPRGSGAGIIFG---NTGGVMEAAIRSAYYFLTKKQPSDELLKLEAVRGMAGVRKAELVI 338
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+ LK A+ +G N + + +K+ K + FVEVM CP GC++GGGQ K G+
Sbjct: 339 QN-IPLKVAVIHGTDNARKFLHHLKVSKEHFDFVEVMTCPGGCISGGGQTK-HIGEDMDV 396
Query: 414 LIKT-LETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K ++T+Y ++ V L + NP ++ +Y E+ +P S+ A+ +HT Y
Sbjct: 397 VRKARIQTLYDKDSSVALRNSHDNPHIQEVYKEFYGKPLSDLAEALLHTSY 447
>gi|304440540|ref|ZP_07400427.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371018|gb|EFM24637.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 577
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 205/418 (49%), Gaps = 35/418 (8%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGI 110
KI +C C CIT L ++ E N ++ K V++ ++P RAS AE G+
Sbjct: 182 KIEDANCSLCGQCITHCPVGALSERDDTEKAWNALEDETKTVVVQVAPAVRASWAEQMGL 241
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
S + K+ LK +G +FDT DLT++E +EF+ R+ ER P
Sbjct: 242 SEEEAPVGKIFDALKKMGADYVFDTVFGADLTIMEEASEFLERFTAGDLK--ER-----P 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + + ++L +S+ KSPQQ GA +K + +K+G P++I ++VM
Sbjct: 295 MFTSCCPGWVRFVKTEF-PHMLSSLSTAKSPQQMFGAVMKSYFAEKIGKNPNDIVAISVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E + + + E D V+TT E+ +I+ +N LE
Sbjct: 354 PCVAKKAEREMDMYYGEFAGH------------ETDIVITTRELTRMIKSAHINVSNLEN 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN------ 343
P D + + G ++ G++GG E R A TL G+ F +RN
Sbjct: 402 IPSDNPMEDGTGAGVIF---GATGGVMEAALRTAYFTLKGENPPNDA-FLRVRNDGSKDG 457
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
S RE +++G ++ A+ G N + ++ ++ + +Y FVEVMACP GC+ GGGQI
Sbjct: 458 SGIRESEFDIDG-VKVRTAVVSGLGNTRELLERIDKGEANYDFVEVMACPGGCVGGGGQI 516
Query: 404 KPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ E K L + +N NP ++ LYDE+L +P S KA +HTE+
Sbjct: 517 IHDGQEKAFERGKKLYKLD-DNYEYRCSHDNPDIKKLYDEYLGKPLSFKAHMLLHTEH 573
>gi|449131334|ref|ZP_21767550.1| hydrogenase, Fe-only [Treponema denticola SP37]
gi|448940167|gb|EMB21078.1| hydrogenase, Fe-only [Treponema denticola SP37]
Length = 596
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 207/418 (49%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + + K V++ ++P R + EH G+
Sbjct: 183 IADSDCSLCGQCITHCPVGALRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHLGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDTS S DLT++E EF+ R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRMGADYVFDTSFSADLTIMEEAYEFLERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ ++SS KSP Q GA +K + + +G RP++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSHLSSAKSPMQMFGAVMKSYFAESIGKRPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E + E F + ++D VLTT E + +I+ + + L+E+
Sbjct: 355 CVAKKGEISMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPQTLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + G+ FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGENCPPD-AFKVVRHSSQEETG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLSVAVASGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL + + +Y N+ L +N +++LY+ + E+P S KA +HT++
Sbjct: 515 PIHDGFELAFERGQNLYFIDSNLKLRYSHENEDIKNLYNNFFEKPNSHKAHSLLHTDH 572
>gi|333995596|ref|YP_004528209.1| iron hydrogenase 1 [Treponema azotonutricium ZAS-9]
gi|333734672|gb|AEF80621.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI)
[Treponema azotonutricium ZAS-9]
gi|342308737|gb|AEL20841.1| HndA [Treponema azotonutricium ZAS-9]
Length = 585
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 200/424 (47%), Gaps = 58/424 (13%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C C + E+ + S + N ++ ++P R +LAE FG+ P VF
Sbjct: 191 CIKCGQCAAHCPVGAIYERDDTVKVWSALQNPDVHPVVQIAPAVRVALAEEFGLPPGTVF 250
Query: 117 -KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG K++FDT+ S DLT++E E + R S +P+++S C
Sbjct: 251 TKKIYAALRRLGFKTVFDTNFSADLTIMEEGTELVKRLTTK--------GSDIPLITSCC 302
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ Y EK I P S+ KSPQQ +GA IK + +K G P++IY V+VMPC KK
Sbjct: 303 PAWVDYMEKYYADMI-PNFSTAKSPQQMMGAMIKAYWAEKAGVDPNKIYSVSVMPCTAKK 361
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E+ R D + S + +VD V+TT E+ +I+ + L++ D
Sbjct: 362 WESHRND---DMKSAGHGF--------DVDIVITTRELARMIKQAGIEILKLDDEEADSP 410
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
+ G ++GV +GG E R +A L K G + F R D +E ++
Sbjct: 411 MGPYTGAGTIFGV---TGGVMEAAVR-SAYFLVTKKELGDVNFLPARGLDGVKEAEVDFG 466
Query: 355 GKTLLKFALCYGFQNLQNIVRKVK-----MRKCDYQFVEVMAC----------PSGCLNG 399
T +K A+ + N++ ++ K++ ++ Y FVEVMAC P GC +
Sbjct: 467 NGTKIKIAIAHQMGNIEAVLNKIRDARDAGKETPYHFVEVMACRGGCIGGGGQPYGCTDE 526
Query: 400 GGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
+++ E IY ++ L +NP + +Y E+L +P KA + +
Sbjct: 527 VRKLR-------------TEGIYKDDTQSKLRCSHQNPFITQVYKEFLGEPNGHKAHELL 573
Query: 458 HTEY 461
HT+Y
Sbjct: 574 HTKY 577
>gi|417962959|ref|ZP_12605049.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-3]
gi|380335075|gb|EIA25356.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-3]
Length = 359
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 92 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
VI++++P R +L E F + + V K+ T L+ +G IFD + DLT++E E +
Sbjct: 5 VIVAMAPSVRTALGELFKMDYGVDVTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELV 64
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
+ K + +++ PM +S CPGW+ AE +L S+ KSPQQ GA K
Sbjct: 65 NKIKNN--------DTNFPMFTSCCPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKS 115
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ P +++ VT+MPC KK EA R + V + G I +D+V+TT
Sbjct: 116 YYPAIENLDPKKVFTVTIMPCTAKKFEADRPEMV-----------NNG--IRNIDAVITT 162
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 163 REFGRMLKELKIDFSSLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 219
Query: 331 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 220 DLD-KIEYKDVRGFEGIKEATVEINNKE-YTVAVVNGASNFFKMMKDNLLEKKQYHFIEV 277
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 445
MAC GC+NGGGQ P K K L L +N+ NP + +YD ++
Sbjct: 278 MACYGGCINGGGQPYVTPEMRSKIDYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYM 337
Query: 446 EQPGSEKAKKHVHTEY 461
+PG A + +H +Y
Sbjct: 338 GKPGKGLAHEILHQKY 353
>gi|417967479|ref|ZP_12608607.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-5]
gi|380336209|gb|EIA26251.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-5]
Length = 379
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 92 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
VI++++P R +L E F + + V K+ T L+ +G IFD + DLT++E E +
Sbjct: 25 VIVAMAPSVRTALGELFKMDYGVDVTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELV 84
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
+ K + +++ PM +S CPGW+ AE +L S+ KSPQQ GA K
Sbjct: 85 NKIKNN--------DTNFPMFTSCCPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKS 135
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ P +++ VT+MPC KK EA R + V + G I +D+V+TT
Sbjct: 136 YYPAIENLDPKKVFTVTIMPCTAKKFEADRPEMV-----------NNG--IRNIDAVITT 182
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 183 REFGRMLKELKIDFSSLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 239
Query: 331 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 240 DLD-KIEYKDVRGFEGIKEATVEINNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEV 297
Query: 390 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 445
MAC GC+NGGGQ P K K L L +N+ NP + +YD ++
Sbjct: 298 MACYGGCINGGGQPYVTPEMRSKIDYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYM 357
Query: 446 EQPGSEKAKKHVHTEY 461
+PG A + +H +Y
Sbjct: 358 GKPGKGLAHEILHQKY 373
>gi|157863897|ref|XP_001687499.1| putative hydrogenase [Leishmania major strain Friedlin]
gi|68223710|emb|CAJ01939.1| putative hydrogenase [Leishmania major strain Friedlin]
Length = 642
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/540 (27%), Positives = 230/540 (42%), Gaps = 142/540 (26%)
Query: 7 PTLRIGDLSDFIAP-----SQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLA 61
PTL S + P S + VV +K+ P P ++ ++ Q A+ VKI+L+DCLA
Sbjct: 13 PTLISSGGSHAVGPGDPTASASGVVGMKRGGNAPPLGPGIAAAA-QHADVVKITLQDCLA 71
Query: 62 CSGCITSAETVMLEKQSLDEFLSNIN-----------KGKAV---IISLSPQSRASLAEH 107
CSGC+T+AETV++ QS E +S + KG A+ ++S+S QS ASLA +
Sbjct: 72 CSGCVTTAETVLVNAQSRHEIVSALLTSSASTSSTTAKGSALRPRLVSISSQSCASLAAY 131
Query: 108 FGISPLQVFKKLTTFLK----SLGVKS--------------------------------- 130
+S V++ + F++ + G++
Sbjct: 132 LHMSMAAVYELVAGFMRATLTTAGLQEAARNAEIAAAGPPRDTMKNEEVSGASTTATTDS 191
Query: 131 -------------IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
+ D + L+ E+ R + S ++D LP++ SACPG
Sbjct: 192 STVVLSELEPPIYVIDLEWAEQLSAELTAQEYDRRRRGSGNAED----GPLPLIVSACPG 247
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
W+CY EKQ G+ +LP++ V S Q G+ K + L YHV+V PC+D+KLE
Sbjct: 248 WVCYCEKQ-GAALLPHLCPVMSAQGIAGSYAKRAVAANL-------YHVSVQPCFDRKLE 299
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEV--DSVLTTGEVLDLI------------------ 277
AAR+ + S +G ++P V D VL+T E+L+ +
Sbjct: 300 AARDS----MPSSTTAPPADGTDMPVVYTDCVLSTAELLEWMKEADPTLPWRGRLDTNVN 355
Query: 278 ----------------QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 321
+ +N E S + + H SGGY +V
Sbjct: 356 AAAALAGGNGPGHTTQRPTQLNEEEEPTSTPPPAASAIFAPAHDAARFAGSGGYHRSVIA 415
Query: 322 HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC-----------YGFQNL 370
H L+ + + + + VA EV+ + A C YGFQ +
Sbjct: 416 H---RLWAEGVAALPSSSSPSPNTPANVAYEVKRNRNHQLATCAALPEEVFCIGYGFQQI 472
Query: 371 QNIVRKVKMR---KCDYQFVEVMACPSGCLNGGGQIKPKPGQSP-KELIKTLETIYLENV 426
QN+VR +K R Y F+E+MACP GCLNGGGQ+ +P Q P E++ + Y N+
Sbjct: 473 QNVVRGLKKRIPAMRSYTFIELMACPDGCLNGGGQV--RPAQQPHAEVLDAVLDAYARNM 530
>gi|422350074|ref|ZP_16430961.1| hydrogenase, Fe-only [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657669|gb|EKB30553.1| hydrogenase, Fe-only [Sutterella wadsworthensis 2_1_59BFAA]
Length = 683
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 197/414 (47%), Gaps = 32/414 (7%)
Query: 59 CLACSGCITSAETVMLE-KQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C CI T L+ K S D + + K VI S SP R +L + FG++ V
Sbjct: 58 CIHCGQCIPVCPTNSLQIKSSCDAVRKAVADPDKIVIFSTSPSVRVALGDAFGMADGAFV 117
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ L+ LG + DT+ + DLT+ E E I R ++ LP +S C
Sbjct: 118 EGQMVELLRRLGGDYVLDTNFAADLTICEEAAELIERITNAK--------GPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ Y E ++P+ISS KSP G T+K + +K+ P I HV V PC KK
Sbjct: 170 PAWVRYCE-TFHPEMIPHISSAKSPIGMQGPTVKTYFAKKMNLDPKRIVHVAVTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE ++++ D + + D V+TT E+ D + +NF L E D++
Sbjct: 229 AEILRE----EMNAAGRLLGDPAMR--DTDYVITTVELADWAKAARINFAELPEGAFDRL 282
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT-IRN-SDFREVALEV 353
+ G ++ G++GG E R A + L G+ L T +R D +E + +
Sbjct: 283 MGEGSGAGVIF---GNTGGVMEAALRTAYRHLTGETAPAELYHLTPVRGLQDVKEATVTI 339
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQFVEVMACPSGCLNGGGQIKPKPGQSP 411
G + A+ YG + +R++ + D Y FVEVM+CP GC++GGGQ P +
Sbjct: 340 AGND-INVAVIYGTASAGEFIRRLNASETDKPYHFVEVMSCPGGCISGGGQ--PSAFGNK 396
Query: 412 KELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++++ L E + +N +++LY ++ +P SE A++ +HT Y
Sbjct: 397 ADVLREARIASLYKRDEEMDCRTSDENEEIKALYRDFYGEPLSELAEELLHTNY 450
>gi|110799819|ref|YP_695522.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
gi|110674466|gb|ABG83453.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
Length = 696
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 216/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S+ K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDAISD--KDKIVIVSTSPAVRVSLGEEFNMNDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHPEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKEIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGIEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENALKFISKIKNSDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y + + L ++N ++ LY+E+ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSSMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTTYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|374384531|ref|ZP_09642051.1| hydrogenase, Fe-only [Odoribacter laneus YIT 12061]
gi|373228439|gb|EHP50748.1| hydrogenase, Fe-only [Odoribacter laneus YIT 12061]
Length = 585
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 206/414 (49%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI- 110
++ +C C C+ + E + ++++N K VI+ +P RA+L E FG+
Sbjct: 191 LTTSECTFCGQCVAVCPVGALTEMDHTNRLINDLNNPRKTVIVQTAPAVRAALGEEFGLP 250
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V K+ L+ LG +FDT + DLT++E E + R D N LP+
Sbjct: 251 AGTSVTGKMAAALRQLGFAKVFDTDFAADLTIMEEGTELLNRLTAYLNGD---KNVRLPI 307
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E Q +L S+ +SPQQ G+ K + +K+G +++ V++MP
Sbjct: 308 LTSCCPAWVNFFEHQFPD-MLDIPSTARSPQQMFGSIAKTYWAEKMGIPREDLIVVSIMP 366
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R++F D P+V+ ++T E+ LI+ ++F +L E
Sbjct: 367 CLAKKYECGRDEFKVNDD-------------PDVNYSISTRELASLIKRANIDFNSLPEE 413
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ L G ++G +SGG E R A + G+ +E ++F+ +R D ++
Sbjct: 414 DFDQPLGESTGAGVIFG---ASGGVMEAALRTAYELYTGQKLE-KVDFEAVRGLDNIKKA 469
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ + G L + +G N + ++ ++K K ++ +E+MACP GC+ GGGQ P
Sbjct: 470 TVRLNG-VELHVGIAHGLGNARKLLNEIKEGKSEFHAIEIMACPGGCIGGGGQ--PLHHG 526
Query: 410 SPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L +Y E N L +NP + LY+E+L +P SEKA +HT Y
Sbjct: 527 NSELLKARTHALYEEDRNKPLRKSHENPYILKLYEEYLGKPMSEKAHHLLHTHY 580
>gi|303245643|ref|ZP_07331926.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
gi|302492906|gb|EFL52771.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
Length = 585
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 211/420 (50%), Gaps = 31/420 (7%)
Query: 49 AEPVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A +++L D C C C+ T ++E + + E + + N K VI+ +P RA+L
Sbjct: 184 APAFEMNLADTVCTNCGQCVAVCPTGALVEHEYIWEVVEALANPDKVVIVQTAPAVRAAL 243
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E G++P V K+ L+ LG +FDT + DLT++E +EF+ R + D
Sbjct: 244 GEDLGVAPGTSVTGKMAAALRRLGFDHVFDTDFAADLTIMEEGSEFLDRLGKHLAGD--- 300
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+N LP+L+S CPGW+ + E Q +L S+ KSPQQ GA K + LG +++
Sbjct: 301 TNVKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFGAIAKTYYADLLGIPREKL 359
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK E AR +F + P+VD V+TT E+ L++ ++
Sbjct: 360 VVVSVMPCLAKKYECARPEFSVNGN-------------PDVDIVITTRELAKLVKRMNID 406
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F L + D L ++GV +GG E R A + G+ ++ ++F+ +R
Sbjct: 407 FAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYELATGETLK-KVDFEDVRG 462
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
D + A G L + +G N + ++ +V+ + + +EVMACP GC+ GGGQ
Sbjct: 463 MDGVKKAKVKVGDNELVIGVAHGLGNARELLNRVRAGE-TFHAIEVMACPGGCIGGGGQ- 520
Query: 404 KPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + L K + +Y E+ L +NP + LY+++L +P SE++ + +HT Y
Sbjct: 521 -PYHHGDVELLKKRTQVLYAEDAGKPLRKSHENPYIIELYEKFLGKPLSERSHQLLHTHY 579
>gi|346224251|ref|ZP_08845393.1| hydrogenase, Fe-only [Anaerophaga thermohalophila DSM 12881]
Length = 590
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 206/410 (50%), Gaps = 32/410 (7%)
Query: 59 CLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C C C+ T L ++ + + ++ K V++ +P RA+L E FG+ P V
Sbjct: 195 CTYCGQCVAVCPTGALTERDYTWKVIEALVDPNKTVVVQTAPAVRAALGESFGMEPGTLV 254
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ LK LG +FDT + DLT++E EF+ R + D + LP+L+S C
Sbjct: 255 TGKMVAALKKLGFDYVFDTDFAADLTIMEEGTEFLDRLTRHLNGD---KSVKLPILTSCC 311
Query: 176 PGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E Q I +P S+ KSPQQ GA K + +KL + +++ V+VMPC K
Sbjct: 312 PGWVKFFEHQFPEMIDIP--STAKSPQQMFGAIAKSYFAKKLDKKREDLVVVSVMPCLAK 369
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+F D+ +V+ +TT E+ LI+ ++F +L + D+
Sbjct: 370 KYECTREEFSVNGDA-------------DVNVSITTRELAQLIRNANIDFASLTDEEFDQ 416
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++G ++GG E R A + GK +E +EF +R + R+ ++
Sbjct: 417 PLGESTGAGVIFG---TTGGVIEAAVRTAYELHTGKHLE-KVEFNELRGMEGSRKATVDF 472
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G L + +G N + ++ +K K D+ +E+MACP GC+ GGGQ P +
Sbjct: 473 DGMKL-NIGIAHGLGNARKLLEDIKSGKSDFHAIEIMACPGGCIGGGGQ--PYHHGNVDI 529
Query: 414 LIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K IY E+ + +NP ++ LY E+L +P S+ + + +HT Y
Sbjct: 530 LKKRQRAIYEEDAGKPIRKSHENPFIQELYKEFLGEPLSDLSHELLHTHY 579
>gi|422873618|ref|ZP_16920103.1| [Fe] hydrogenase [Clostridium perfringens F262]
gi|380305436|gb|EIA17714.1| [Fe] hydrogenase [Clostridium perfringens F262]
Length = 696
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 216/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S+ K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDAISH--KDKIVIVSTSPAVRVSLGEEFNMNNGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHPEILDHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENASKFISKMKNSDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y + + L ++N ++ LY+E+ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSSMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTTYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|346316112|ref|ZP_08857618.1| hypothetical protein HMPREF9022_03275 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345903295|gb|EGX73060.1| hypothetical protein HMPREF9022_03275 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 622
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 200/410 (48%), Gaps = 27/410 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C C T + E Q + S I + K VI SP R SL E FG+ P V
Sbjct: 58 CIHCGQCANVCPTGAITEIQDWMQVQSVIQDSSKTVIAITSPSVRVSLGEEFGMQPGSYV 117
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+++ L++LG +FDT+ + DLT++E +E I R + Q LP +S C
Sbjct: 118 EEQMVGSLRALGFDYVFDTTFAADLTIMEEASELIERIQTKQ---------PLPQFTSCC 168
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE +LP IS+ KSP TIK +K D+IY V + PC KK
Sbjct: 169 PAWVKFAETYYPE-LLPNISTSKSPISMFAPTIKTWFAEKESLDADDIYVVAITPCTAKK 227
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
LE RE+ S Y D + D V+TT E+ ++ ++ E++EES D +
Sbjct: 228 LEIMREEL-----SDAANYLDRK-PAQDCDRVVTTRELASWMRACNLDLESVEESDYDSL 281
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSDFREVALEVE 354
+ G ++G ++GG E R A L K E L+ + +R + + A
Sbjct: 282 MPRGSGAGIIFG---NTGGVMEAAIRSAYYFLTKKQPQEDLLQLQAVRGLEGVKTAELTI 338
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
+ LK A+ +G N + + +K + FVEVM CP GC++GGGQ K G+ +
Sbjct: 339 QELPLKVAVVHGTDNARKFLHHIKESGEHFDFVEVMTCPGGCISGGGQTK-HIGEDMDTV 397
Query: 415 IKT-LETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K ++++Y ++ + L + NP ++ +Y+E+ +P S+ A+ +HT Y
Sbjct: 398 RKARIQSLYDKDSTITLRNSHDNPHIQQVYEEFYGKPLSDLAEALLHTNY 447
>gi|449128681|ref|ZP_21764927.1| hydrogenase, Fe-only [Treponema denticola SP33]
gi|448941089|gb|EMB21993.1| hydrogenase, Fe-only [Treponema denticola SP33]
Length = 596
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 206/418 (49%), Gaps = 38/418 (9%)
Query: 54 ISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I+ DC C CIT L E+ ++F + + K V++ ++P R + EH G+
Sbjct: 183 IAEADCSLCGQCITHCPVGALRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHLGLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
K+ LK +G +FDTS S DLT++E EF+ R+ + + D PM
Sbjct: 243 LKDASVNKIFDALKRMGADYVFDTSFSADLTIMEEAYEFLERFSKGELKDK-------PM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ Y+SS KSP Q GA +K + + +G +P++I+ V +MP
Sbjct: 296 FTSCCPGWVRFIKSQY-PHLVSYLSSAKSPMQMFGAVMKSYFAESIGKKPEDIFSVAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + ++D VLTT E + +I+ + E L+E+
Sbjct: 355 CVAKKGEINMELFYGEYAGH------------DMDCVLTTREFVRMIKSAHILPETLKET 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
DK+ + G ++ G++GG E R A + G+ FK +R+S E
Sbjct: 403 EPDKLFHDASGAGIIF---GATGGVMEAALRTAYYAIMGENCPPD-AFKVVRHSSQDESG 458
Query: 351 LEVEGKTL----LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ TL L A+ G N + ++ ++ + Y FVE+MACP GC+ GGGQ
Sbjct: 459 IIEASFTLKENNLSVAVTSGLANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ---- 514
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P EL + + +Y N+ L +N +++LY+ + E+P S KA +HT++
Sbjct: 515 PIHDGFELAFERGQNLYFIDSNLKLRYSHENEDIKNLYNNFFEKPNSHKAHSLLHTDH 572
>gi|119610197|gb|EAW89791.1| hCG30379, isoform CRA_a [Homo sapiens]
Length = 261
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 133/229 (58%), Gaps = 24/229 (10%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 45 AKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 104
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 105 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 162
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 163 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 219
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGE 272
+HV V PCYDKKLEA +E L D VLT+GE
Sbjct: 220 FHVIVAPCYDKKLEALQESLPPALHGSR-----------GADCVLTSGE 257
>gi|317472987|ref|ZP_07932290.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
gi|316899532|gb|EFV21543.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
Length = 572
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 213/421 (50%), Gaps = 44/421 (10%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I + DC C CIT L ++ L + ++ K V+ ++P RA+ AE G+S
Sbjct: 183 IRVADCSLCGQCITHCPVGALRERDDTSMLFSALEDENKIVVAQIAPAVRAAWAEQLGLS 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ +K+ T + +G+ +FDT+ S DLT++E +EF+ R Q+ D E PM
Sbjct: 243 REEAPVEKIVTAFRRMGIDYVFDTTFSADLTIMEEGSEFVKRL---QDGDLE----EYPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q I +S+ KSPQQ GA +K + +KLG P+ I+ +++MP
Sbjct: 296 FTSCCPGWVRFIKTQFPDMI-GRLSTAKSPQQMFGAVMKTYFAKKLGVDPERIFTLSIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E ++D E Y ++D VLTT E+ +++ + +N + LE+
Sbjct: 355 CLAKKAER-------EMDLFYEEYAGH-----DIDCVLTTRELDRMLRAEHLNLQFLEKG 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKTIRNSDFRE 348
D G ++G ++GG E R A + G+ + E + ++ + E
Sbjct: 403 EFDSPFETGTGAGVIFG---ATGGVMEAALRSAYFLVTGENPDADAFREIRGVKRQGWTE 459
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC-------LNGGG 401
+V G +++ A+ G N +N++ ++ ++ Y+FVEVMACP GC ++ G
Sbjct: 460 AEFDVAG-NVIRVAVVSGLGNTRNLMEAIRRKEVKYEFVEVMACPGGCAGGGGQPIHDGQ 518
Query: 402 QIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + G S L + E + + NP +++LY+E+ E+P S +A + +HTE+
Sbjct: 519 ELAEERGSSLYFLDRDTEIRFSHD--------NPDIQNLYEEFFEKPLSHRAHQLLHTEH 570
Query: 462 H 462
Sbjct: 571 Q 571
>gi|336421060|ref|ZP_08601220.1| hypothetical protein HMPREF0993_00597 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336002419|gb|EGN32528.1| hypothetical protein HMPREF0993_00597 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 576
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 205/417 (49%), Gaps = 35/417 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I DC C CIT L + E + N N K VI ++P R + +E +
Sbjct: 183 IEEADCSLCGQCITHCPVGALRARDDTEKVWNAIANPDKIVIAQVAPAVRTAWSEGLNLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + K+ LK +GV FDT+ S DLT++E EF+ R+ + D PM
Sbjct: 243 PEEATVGKILDALKRMGVDYAFDTAFSADLTIMEEATEFLKRFTSGELKD-------RPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ Y+S+ KSPQQ GA +K + +K+G P++IY V+VMP
Sbjct: 296 FTSCCPGWVRFVKSQF-PHMVKYLSTAKSPQQMFGAIMKTYFAEKIGVSPEQIYTVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + +VD+V+TT E++ +I+ ++ + LE+
Sbjct: 355 CVAKKDEREMELFYGEYAGH------------DVDAVITTRELIKMIRSAHISPDTLEDI 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
D + G ++ G++GG E R A L + + F+ +R+ F+E
Sbjct: 403 KSDTPMREGSGAGVIF---GTTGGVMEAALRSAYYLLKSENPDVD-AFRVVRSPGFQENN 458
Query: 351 LEVEG-----KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
VE +K A+ G N + ++++++ + Y FVEVMACP GC+ GGGQ
Sbjct: 459 GVVEADFTIDDITVKTAVVSGLANTRVLLKRIEREEVHYDFVEVMACPGGCVGGGGQPIH 518
Query: 406 KPGQSPKELIKTLETIYL-ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + K L + NV + +N + +YDE+LE+P S KA +HTE+
Sbjct: 519 DGEERAYDRGKNLYMLDAGANVRFS--HENRDIIRIYDEYLEKPNSHKAHMLLHTEH 573
>gi|310779017|ref|YP_003967350.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Ilyobacter polytropus DSM 2926]
gi|309748340|gb|ADO83002.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Ilyobacter polytropus DSM 2926]
Length = 640
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 207/442 (46%), Gaps = 56/442 (12%)
Query: 59 CLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C+ C CI T L ++ E + N +GK V+I +P RA + E FG+ P +
Sbjct: 222 CINCGQCINRCPTAALYEKDESELVWNALETEGKHVVIQTAPAPRAGIGEEFGLEPGTPM 281
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ T L+ G +FDT + DLT+IE E + R + E D ++ LP+ +S
Sbjct: 282 TLKMNTALRRCGFHKVFDTCFTADLTIIEEGTELVKRLYDNIEGD---GHTKLPVFTSCS 338
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ Y E +I +S+ KSPQQ G IK + +K P++I V +MPC KK
Sbjct: 339 PGWVKYLEHFFPEFI-ENLSTAKSPQQMFGTIIKTYYAEKNNINPEDIVTVALMPCTAKK 397
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + YRD VD +TT E+ + + ++ +E+S D
Sbjct: 398 YEAGRPEMC------QSGYRD-------VDYGITTREMAKMFKETGIDLPNIEDSDFDDP 444
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN----SDFREVAL 351
T G ++ G++GG E+ R + + G+ ++ E+ I+ D + + L
Sbjct: 445 FTGGSGSGVIF---GATGGVMESAIRTLYELVTGEKVDSLFEYGDIKPVRGFEDIKSLEL 501
Query: 352 EVEGKT-------------------LLKFALCYGFQNLQNIVRKVKMRK--CDYQFVEVM 390
+++ T LK A+C+G N + ++ +K Y F+E M
Sbjct: 502 KIDKVTEVPELLKGQLNSFEFLKNQTLKVAICHGTSNAKRVLEDIKNGGEFSTYHFIEFM 561
Query: 391 ACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWL-E 446
ACP GCL GGGQ P + +E+ IK IY E+ + ++NP V LY + E
Sbjct: 562 ACPGGCLGGGGQ----PIPTNEEIRIKRANAIYSEDKKASVRKSYENPGVLELYKNFFKE 617
Query: 447 QPGSEKAKKHVHTEYHPVVKSI 468
PG EKA K +HT Y K I
Sbjct: 618 GPGKEKAHKLLHTHYKKRGKEI 639
>gi|422345529|ref|ZP_16426443.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
gi|373228254|gb|EHP50564.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
Length = 696
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 214/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + +S K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQNAISY--KDKIVIVSTSPAVRVSLGEEFNMNNGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKHLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHPEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENASKFISKMKNEDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y + + L ++N ++ LY+E+ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSSMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTNYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|347542622|ref|YP_004857259.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985658|dbj|BAK81333.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 578
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 195/412 (47%), Gaps = 35/412 (8%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+C+ C C+ L ++S E + N VI +++P R SL E F + +
Sbjct: 189 NCILCGQCVNICPVDALYEKSHIERVKEALENPDIHVIAAMAPSVRTSLGELFKMDYGID 248
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ +G IFD + DLT++E EF + + + N++ PM +S
Sbjct: 249 VTNKIYTALRKIGFDKIFDINFGADLTIMEEATEFANKIRSN--------NTNFPMFTSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ AE +L +SS KSPQQ GA K + P +++ VT+MPC K
Sbjct: 301 CPAWVRLAENHFPE-LLDNLSSTKSPQQIFGAASKSYYPSIENLDPKKVFTVTIMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + + + G + +D+V+TT E +++ ++F +LE+ LD+
Sbjct: 360 KFEADRPEMI-----------NNG--VRNIDAVITTREFGRMLKELKIDFASLEDGELDE 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
+ G ++GV +GG E R A L K ++ +E+K +R + +E +E+
Sbjct: 407 AMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENKDLD-KIEYKDVRGFEGIKEATVEI 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
K A+ G N +++ + K Y F+EVMAC GC+NGGGQ P K
Sbjct: 463 NNKE-YNVAVVNGASNFFKMMKDNLLDKKQYHFIEVMACYGGCINGGGQPYVTPKMRNKI 521
Query: 414 LIKTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L L +N+ +NP + +Y ++ PG A + +H +Y
Sbjct: 522 DYKKLRGNVLYNQDKNLKYRKSHQNPALLKMYKTYMGTPGEGLAHEILHQKY 573
>gi|153954875|ref|YP_001395640.1| Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
gi|219855329|ref|YP_002472451.1| hypothetical protein CKR_1986 [Clostridium kluyveri NBRC 12016]
gi|146347733|gb|EDK34269.1| Predicted Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
gi|219569053|dbj|BAH07037.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 580
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 194/417 (46%), Gaps = 46/417 (11%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ + + EK + + + K VI++++P RA++ E F +
Sbjct: 187 NCLLCGQCVIACPVGALTEKPHISRVQEALKDPKKHVIVAMAPSVRAAIGELFNMGFGKD 246
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ T L+ L IFD + D+T++E E + R K + PM +S
Sbjct: 247 VTGKIYTALRMLNFDKIFDINFGADMTIMEEATELLERIK---------NGGPFPMFTSC 297
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +Q +Y +L +SS KSPQQ G K + G +IY VT+MPC
Sbjct: 298 CPAWV----RQAQNYYPELLENLSSAKSPQQIFGTATKTYYPSISGIEAKDIYTVTIMPC 353
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
DKK EA D G+ +D+VLTT E+ +I+ + F +LE+S
Sbjct: 354 NDKKYEADLTDMEVN-----------GMRC--IDAVLTTRELAKMIKAAKIKFTSLEDSE 400
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
D + G ++ G++GG E R AK V +E+ IR +E +
Sbjct: 401 ADAAMGEYSGAGVIF---GNTGGVMEAALR-TAKDFAENVDLKDIEYTQIRGLKGIKESS 456
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ G T A+ G NL + + K+ + Y F+EVMACP GC+NGGGQ P
Sbjct: 457 VEISGNT-YNIAVINGAANLFDFIDSGKIGEKQYHFIEVMACPGGCINGGGQ--PHLNSL 513
Query: 411 PKELI--KTLETIYLENVMLADP----FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ELI +TL L N P KN + +YD + +PG A + +H +Y
Sbjct: 514 NRELIDYRTLRASVLYNQDNHLPKRKSHKNTAIIKMYDTYFGKPGHGLAHELLHFKY 570
>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
16795]
gi|164604201|gb|EDQ97666.1| hydrogenase, Fe-only [Clostridium bartlettii DSM 16795]
Length = 646
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 219/430 (50%), Gaps = 35/430 (8%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITS--AETVMLEKQSLDEFLSNINK-GKAVIISLS 97
V + ++ E +I C C C+++ + + +L +F+ +++ K VI ++
Sbjct: 237 VDCIAGEKKEQRRIDYNRCTHCGRCLSACPVDAITAGDNTL-KFIRDLSTPNKLVITQMA 295
Query: 98 PQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS 156
P R ++ E FG + V KL L+ LGV +FDTS + DLT++E E R ++
Sbjct: 296 PAVRVAIGEAFGFEAGDNVEHKLAAGLRKLGVDYVFDTSWAADLTIMEEAAELQNRLERY 355
Query: 157 QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL 216
D + LPML+S CP W+ + E+ G +L SS KSP Q K ++
Sbjct: 356 FSGD---KSVKLPMLTSCCPSWVKFIEQNYGD-MLDVPSSAKSPMQMFATVAKDIWAKEK 411
Query: 217 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 276
G + DE+ V +MPC KK EA+R +F L+ +VD V+TT E++ +
Sbjct: 412 GLKRDEVTSVAIMPCIAKKYEASRPEFSRGLNY-------------DVDYVITTRELIKI 458
Query: 277 IQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL 336
Q ++ + +E +D+++ G ++ G +GG E R A + + G+ IE ++
Sbjct: 459 FQDSGIDLKTIEGEEIDQVMGEYTGGGIIF---GRTGGVIEAALRTALENMTGEKIE-NV 514
Query: 337 EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 395
EF ++R D FR +EV G L+ + +G + ++ K++ + + +E+MACP G
Sbjct: 515 EFHSLRGFDGFRACDVEV-GDIKLRIGVAHGLEEAGKMLDKIRDGEEFFHAIEIMACPGG 573
Query: 396 CLNGGGQIKPKPGQSPKELIKT----LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSE 451
C+ GGGQ PK ++ +++ L I E M +NP V+++YD++L+ P S
Sbjct: 574 CVGGGGQ--PKVRKNKDAILQKRGEGLNNIDREKNMRVSK-ENPEVQAIYDKYLDHPLSH 630
Query: 452 KAKKHVHTEY 461
KA + +HT Y
Sbjct: 631 KAHELLHTRY 640
>gi|168205052|ref|ZP_02631057.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
gi|170663376|gb|EDT16059.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
Length = 696
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 215/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S+ K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDSISD--KDKIVIVSTSPAIRVSLGEEFNMNDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG I DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYILDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHPEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIINVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT E+ + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTRELAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENASKFISKIKNEDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y N+ L ++N ++ LY+E+ +P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSNMKLRVSYENEEIKKLYEEFYGKPLSNLAEEMLHTIYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|167759826|ref|ZP_02431953.1| hypothetical protein CLOSCI_02189 [Clostridium scindens ATCC 35704]
gi|167662445|gb|EDS06575.1| hydrogenase, Fe-only [Clostridium scindens ATCC 35704]
Length = 576
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 205/417 (49%), Gaps = 35/417 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I DC C CIT L + E + N N K VI ++P R + +E +
Sbjct: 183 IEEADCSLCGQCITHCPVGALRARDDTEKVWNAIANPDKIVIAQVAPAVRTAWSEGLNLD 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + K+ LK +GV FDT+ S DLT++E EF+ R+ + D PM
Sbjct: 243 PEEATVGKILDALKRMGVDYAFDTAFSADLTIMEEATEFLKRFTSGELKD-------RPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q +++ Y+S+ KSPQQ GA +K + +K+G P++IY V+VMP
Sbjct: 296 FTSCCPGWVRFVKSQF-PHMVKYLSTAKSPQQMFGAIMKTYFAEKIGVSPEQIYTVSVMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E E F + +VD+V+TT E++ +I+ ++ + LE+
Sbjct: 355 CVAKKDEREMELFYGEYAGH------------DVDAVITTRELIKMIRSAHISPDTLEDI 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 350
D + G ++ G++GG E R A L + + F+ +R+ F+E
Sbjct: 403 KSDTPMREGSGAGVIF---GATGGVMEAALRSAYYLLKSENPDVD-AFRVVRSPGFQENN 458
Query: 351 LEVEG-----KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP 405
VE +K A+ G N + ++++++ + Y FVEVMACP GC+ GGGQ
Sbjct: 459 GVVEADFTIDDITVKTAVVSGLANTRVLLKRIEREEVHYDFVEVMACPGGCVGGGGQPIH 518
Query: 406 KPGQSPKELIKTLETIYL-ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + K L + NV + +N + +YDE+LE+P S KA +HTE+
Sbjct: 519 DGEERAYDRGKNLYMLDAGANVRFS--HENRDIIRIYDEYLEKPNSHKAHMLLHTEH 573
>gi|254976913|ref|ZP_05273385.1| hydrogenase [Clostridium difficile QCD-66c26]
gi|255094299|ref|ZP_05323777.1| hydrogenase [Clostridium difficile CIP 107932]
gi|255102481|ref|ZP_05331458.1| hydrogenase [Clostridium difficile QCD-63q42]
gi|255308386|ref|ZP_05352557.1| hydrogenase [Clostridium difficile ATCC 43255]
gi|255316053|ref|ZP_05357636.1| hydrogenase [Clostridium difficile QCD-76w55]
gi|255518710|ref|ZP_05386386.1| hydrogenase [Clostridium difficile QCD-97b34]
gi|255651832|ref|ZP_05398734.1| hydrogenase [Clostridium difficile QCD-37x79]
gi|255657272|ref|ZP_05402681.1| hydrogenase [Clostridium difficile QCD-23m63]
gi|260684858|ref|YP_003216143.1| hydrogenase [Clostridium difficile CD196]
gi|260688516|ref|YP_003219650.1| hydrogenase [Clostridium difficile R20291]
gi|296451875|ref|ZP_06893593.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
gi|296879729|ref|ZP_06903704.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
gi|306521619|ref|ZP_07407966.1| hydrogenase [Clostridium difficile QCD-32g58]
gi|384362527|ref|YP_006200379.1| hydrogenase [Clostridium difficile BI1]
gi|423090386|ref|ZP_17078687.1| hydrogenase, Fe-only [Clostridium difficile 70-100-2010]
gi|260211021|emb|CBA66340.1| hydrogenase [Clostridium difficile CD196]
gi|260214533|emb|CBE07055.1| hydrogenase [Clostridium difficile R20291]
gi|296259292|gb|EFH06169.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
gi|296429318|gb|EFH15190.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
gi|357556606|gb|EHJ38196.1| hydrogenase, Fe-only [Clostridium difficile 70-100-2010]
Length = 458
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 222/459 (48%), Gaps = 68/459 (14%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAET----------VMLEKQSLDEFLSNINK-- 88
V+ ++ +P +I+L C+ C C+ + ++ + EK+ E +IN+
Sbjct: 22 VNAIEGEEGKPQEINLDRCVMCGQCVQTCKSYASVIDEGFEFLQEKKQEREIPESINEPI 81
Query: 89 ------------GKAV-------IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLG 127
KA+ ++ +P R +L E FG + L K+ L++L
Sbjct: 82 FAAYNVCDIDKVKKALSDPNVFTMVQCAPAVRVALGEDFGYYLGYLGA-GKMAAALRALN 140
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
++DT+ + DLT++E +E I R + +LPM +S CP W+ + EK
Sbjct: 141 FDRVYDTNFAADLTIMEEGSELIKRVTEG---------GTLPMFTSCCPAWVKFMEKNY- 190
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
+ ++SS KSPQQ GA K + + +I+ V++MPC KK E RE ++
Sbjct: 191 PKLTNHLSSCKSPQQMGGAIFKTYGAEINNVDASKIFSVSIMPCTCKKYECDRE----EM 246
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 307
DS YRD VD VLTT E+ LI+ ++F+ L E D L + G ++G
Sbjct: 247 DSS--GYRD-------VDVVLTTRELAYLIKDMGIDFKNLREEKFDSPLGSYSGAGTIFG 297
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 366
V +GG E R + + G+ I +E K +R + FR+ +++ G L+ + G
Sbjct: 298 V---TGGVMEAAIRTGYELITGESIP-DVEVKQVRGENGFRKSTIKI-GDLDLRVGVVSG 352
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET----IY 422
+N+ ++ ++ K D F+EVM CP GC++GGGQ K + KEL T ++
Sbjct: 353 LKNVIPVLEDLEKGKLDVDFIEVMTCPVGCVSGGGQPKILL-EEYKELAYENRTKATYVH 411
Query: 423 LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E++ + +NP ++ LYDE+L +P EK+ +HT Y
Sbjct: 412 DEHLAIRKSHENPDIKKLYDEYLVEPLGEKSHHLLHTTY 450
>gi|126700933|ref|YP_001089830.1| Iron hydrogenase [Clostridium difficile 630]
gi|115252370|emb|CAJ70211.1| Iron hydrogenase [Clostridium difficile 630]
Length = 461
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 222/459 (48%), Gaps = 68/459 (14%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAET----------VMLEKQSLDEFLSNINK-- 88
V+ ++ +P +I+L C+ C C+ + ++ + EK+ E +IN+
Sbjct: 25 VNAIEGEEGKPQEINLDRCVMCGQCVQTCKSYASVIDEGFEFLQEKKQEREIPESINEPI 84
Query: 89 ------------GKAV-------IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLG 127
KA+ ++ +P R +L E FG + L K+ L++L
Sbjct: 85 FAAYNVCDIDKVKKALSDPNVFTMVQCAPAVRVALGEDFGYYLGYLGA-GKMAAALRALN 143
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
++DT+ + DLT++E +E I R + +LPM +S CP W+ + EK
Sbjct: 144 FDRVYDTNFAADLTIMEEGSELIKRVTEG---------GTLPMFTSCCPAWVKFMEKNYP 194
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
+ ++SS KSPQQ GA K + + +I+ V++MPC KK E RE ++
Sbjct: 195 K-LTNHLSSCKSPQQMGGAIFKTYGAEINNVDASKIFSVSIMPCTCKKYECDRE----EM 249
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 307
DS YRD VD VLTT E+ LI+ ++F+ L E D L + G ++G
Sbjct: 250 DSS--GYRD-------VDVVLTTRELAYLIKDMGIDFKNLREEKFDSPLGSYSGAGTIFG 300
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 366
V +GG E R + + G+ I +E K +R + FR+ +++ G L+ + G
Sbjct: 301 V---TGGVMEAAIRTGYELITGESIP-DVEVKQVRGENGFRKSTIKI-GDLDLRVGVVSG 355
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET----IY 422
+N+ ++ ++ K D F+EVM CP GC++GGGQ K + KEL T ++
Sbjct: 356 LKNVIPVLEDLEKGKLDVDFIEVMTCPVGCVSGGGQPKILL-EEYKELAYENRTKATYVH 414
Query: 423 LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E++ + +NP ++ LYDE+L +P EK+ +HT Y
Sbjct: 415 DEHLAIRKSHENPDIKKLYDEYLVEPLGEKSHHLLHTTY 453
>gi|423082808|ref|ZP_17071393.1| hydrogenase, Fe-only [Clostridium difficile 002-P50-2011]
gi|423085921|ref|ZP_17074356.1| hydrogenase, Fe-only [Clostridium difficile 050-P50-2011]
gi|357547336|gb|EHJ29224.1| hydrogenase, Fe-only [Clostridium difficile 002-P50-2011]
gi|357548312|gb|EHJ30178.1| hydrogenase, Fe-only [Clostridium difficile 050-P50-2011]
Length = 458
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 222/459 (48%), Gaps = 68/459 (14%)
Query: 41 VSTSSKQQAEPVKISLKDCLACSGCITSAET----------VMLEKQSLDEFLSNINK-- 88
V+ ++ +P +I+L C+ C C+ + ++ + EK+ E +IN+
Sbjct: 22 VNAIEGEEGKPQEINLDRCVMCGQCVQTCKSYASVIDEGFEFLQEKKQEREIPESINEPI 81
Query: 89 ------------GKAV-------IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLG 127
KA+ ++ +P R +L E FG + L K+ L++L
Sbjct: 82 FAAYSVCDIDKVKKALSDPNVFTMVQCAPAVRVALGEDFGYYLGYLGA-GKMAAALRALN 140
Query: 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 187
++DT+ + DLT++E +E I R + +LPM +S CP W+ + EK
Sbjct: 141 FDRVYDTNFAADLTIMEEGSELIKRVTEG---------GTLPMFTSCCPAWVKFMEKNY- 190
Query: 188 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 247
+ ++SS KSPQQ GA K + + +I+ V++MPC KK E RE ++
Sbjct: 191 PKLTNHLSSCKSPQQMGGAIFKTYGAEINNVDASKIFSVSIMPCTCKKYECDRE----EM 246
Query: 248 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 307
DS YRD VD VLTT E+ LI+ ++F+ L E D L + G ++G
Sbjct: 247 DSS--GYRD-------VDVVLTTRELAYLIKDMGIDFKNLREEKFDSPLGSYSGAGTIFG 297
Query: 308 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 366
V +GG E R + + G+ I +E K +R + FR+ +++ G L+ + G
Sbjct: 298 V---TGGVMEAAIRTGYELITGESIP-DVEVKQVRGENGFRKSTIKI-GDLDLRVGVVSG 352
Query: 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET----IY 422
+N+ ++ ++ K D F+EVM CP GC++GGGQ K + KEL T ++
Sbjct: 353 LKNVIPVLEDLEKGKLDVDFIEVMTCPVGCVSGGGQPKILL-EEYKELAYENRTKATYVH 411
Query: 423 LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E++ + +NP ++ LYDE+L +P EK+ +HT Y
Sbjct: 412 DEHLAIRKSHENPDIKKLYDEYLVEPLGEKSHHLLHTTY 450
>gi|410099619|ref|ZP_11294588.1| hydrogenase, Fe-only [Parabacteroides goldsteinii CL02T12C30]
gi|409217986|gb|EKN10959.1| hydrogenase, Fe-only [Parabacteroides goldsteinii CL02T12C30]
Length = 596
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 201/416 (48%), Gaps = 34/416 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLE----KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFG 109
I+ C C C++ L +Q + + L+N K VI +P R +L FG
Sbjct: 190 IAGSTCSYCGQCVSVCPVNALSGCNTQQPVLDALAN--PAKIVIAQTAPAVRTALGRDFG 247
Query: 110 ISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
P V K+ + L+ LG +FDT + DLT++E E + R + D+E +
Sbjct: 248 CEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTELLQRLSKYLSGDEE---VKI 304
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
PM++S CPGW+ + E+ + +S+ KSPQQ GA K + +KLG +I V++
Sbjct: 305 PMMTSCCPGWVSFVEQHFPE-LRDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKDIVVVSI 363
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EA+R +F + + P+VD + T E+ LI+ +NF L
Sbjct: 364 MPCLAKKYEASRPEFAVEGN-------------PDVDISIYTRELARLIRYANINFNELP 410
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FR 347
+S D L G ++G ++GG E R A + K +E +EFK +R + R
Sbjct: 411 DSDFDHPLGESTGAGVIFG---TTGGVIEAACRTAYELYTKKPLE-RIEFKELRGLEGIR 466
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
+ +G +K + +G N + +V +VK K Y +E+MACP GC+ GGGQ P
Sbjct: 467 SGTINFDG-VPVKIGIAHGLGNARKLVEEVKSGKSPYHVIEIMACPGGCIGGGGQ--PFH 523
Query: 408 GQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L K +Y E+ L +NP ++ LY E+L +P KA + +HT Y
Sbjct: 524 QGRMDVLRKRAAALYSEDESKPLRKSHENPYIQQLYKEYLGEPCGPKAHELLHTHY 579
>gi|119610198|gb|EAW89792.1| hCG30379, isoform CRA_b [Homo sapiens]
Length = 262
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 125/200 (62%), Gaps = 13/200 (6%)
Query: 52 VKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN--------KGKAVIISLSPQSRAS 103
KI L DCLAC C+T+ E V L +Q+ +F +N K K +++S+ PQS
Sbjct: 46 AKIFLSDCLACDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPY 105
Query: 104 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
A F +S ++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q S++ER
Sbjct: 106 FAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEER 163
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I
Sbjct: 164 T---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKI 220
Query: 224 YHVTVMPCYDKKLEAAREDF 243
+HV V PCYDKKLEA +E
Sbjct: 221 FHVIVAPCYDKKLEALQESL 240
>gi|373496024|ref|ZP_09586572.1| hydrogenase, Fe-only [Fusobacterium sp. 12_1B]
gi|371965935|gb|EHO83427.1| hydrogenase, Fe-only [Fusobacterium sp. 12_1B]
Length = 680
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 216/430 (50%), Gaps = 38/430 (8%)
Query: 55 SLKD------CLACSGCIT----SAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASL 104
SLKD C+ C C S+ T E Q + E + N K K VI S SP R +L
Sbjct: 48 SLKDTNDTAVCINCGQCANVCPASSITEKYEYQQIAEAVKN--KDKIVIFSTSPSVRVAL 105
Query: 105 AEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E FG+ + + K+ + L++LG I DT+ + DLT++E +E I R
Sbjct: 106 GEEFGMEKGSLVEGKMVSLLRALGGNYILDTNFAADLTIVEEASELIQRITTG------- 158
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LP +S CP W+ YAE ILP +S+ KSP G TIK + +K+ ++I
Sbjct: 159 -SKPLPQFTSCCPAWVKYAE-IYHPEILPNLSTAKSPIGMQGPTIKTYFAKKMNIDLEKI 216
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAV 282
+V V PC KK E R D ++ + G+E + ++D V+TT E+ + V
Sbjct: 217 VNVAVTPCTAKKFEIRR-------DEMKDAGKKLGIEDMRDMDYVITTRELALWAKEAGV 269
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTI 341
+F+ALEES DK++ G ++G ++GG E R A + + + L E K +
Sbjct: 270 DFKALEESSFDKVMGESTGAGIIFG---NTGGVMEAALRTAYEYVTHEKAPADLFELKEV 326
Query: 342 RN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 400
R +E ++V G + A+ YG +N ++ KVK + Y F+EVM CP GC+ GG
Sbjct: 327 RGMKGIKEAGIKV-GDLTVNVAVIYGTENADKVIEKVKNGEKSYHFIEVMTCPGGCIGGG 385
Query: 401 GQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
GQ K + + K ++++Y ++ + + +N + +LY E+ P SE A++ +H
Sbjct: 386 GQPKDLDAERDEINQKRIDSLYKKDTLTPIRSSHENSEIIALYKEFYGHPLSELAEEMLH 445
Query: 459 TEYHPVVKSI 468
T+Y+ K +
Sbjct: 446 TQYYDRSKEL 455
>gi|220931146|ref|YP_002508054.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
gi|219992456|gb|ACL69059.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
Length = 570
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 207/408 (50%), Gaps = 38/408 (9%)
Query: 58 DCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C CI + T L + E + + ++ K V++ +P R +L+E FG+ P +
Sbjct: 192 ECTNCGQCIHACPTGALHEVYHYEKVWEVLHDRDKYVVVQTAPAVRVALSEAFGLKPGTI 251
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
F ++ L+ LG +FDT+ + DLT++E E I R +N LPM +S
Sbjct: 252 FTGQMVAGLRRLGFDRVFDTNFTADLTIMEEGTELIERLN---------NNGELPMFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI Y E +I +S+ KSPQQ GA K + K D+I V+VMPC K
Sbjct: 303 SPGWIKYIEHFYPEFI-DNLSTCKSPQQMFGAIAKSYYADKSNIPRDKIVVVSVMPCTAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + EG +VD VLTT E+ +I+ ++ L DK
Sbjct: 362 KFEARRPEM-------------EG----DVDYVLTTRELARMIKEAGIDITNLNAEEHDK 404
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
++ ++ G++GG E R A + + G+ + G L+FK +R + +E + +
Sbjct: 405 LMGTSSGAADIF---GATGGVMEAALRTAYELVTGEKL-GQLDFKNVRGEAGIKEAEVTL 460
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T LK A+ +G N++ ++ +K K +Y FVE+MACP GC+ GGGQ P ++
Sbjct: 461 NG-TQLKVAVAHGLGNVRKLMELIKSGK-EYHFVELMACPGGCIGGGGQPIPTSEDIRRK 518
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
I+ L I +N L +NP ++ LY E+L++ GS KA + +HT Y
Sbjct: 519 RIEALYKID-KNKKLRKSHENPYIKKLYQEFLDKHGSHKAHELLHTHY 565
>gi|333923148|ref|YP_004496728.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748709|gb|AEF93816.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 521
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 41/439 (9%)
Query: 51 PVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ +D+ L IN K V++ +P +R +L E F
Sbjct: 103 PIKDDIT-CVNCGQCTLWCPTGAITERDDIDKVLKAINDKNLHVVVQTAPATRVALGEEF 161
Query: 109 GISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G+ + + K LK LG ++FDT+ S DLT++E E + R +
Sbjct: 162 GMPAGSIVEGKQVAALKKLGFDAVFDTNFSADLTIMEEGTELVKRITGELKK-------P 214
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +L ++SS KSPQQ +GA +K + ++ G P++I+ V+
Sbjct: 215 LPQFTSCSPGWVKFCE-YFYPDLLEHMSSAKSPQQMMGAVVKSYYAKQKGIDPEKIFSVS 273
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK E R + D+ ++ + I +VD VLTT E+ +I+ +NF L
Sbjct: 274 IMPCTAKKYECQRPEMN---DAGQKAGKP---NIRDVDVVLTTRELARMIKRAGINFNEL 327
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
E++ D ML ++ G++GG E R A + + E LE +R +
Sbjct: 328 EDAQYDSMLGEGTGAAVIF---GTTGGVMEAAVRSAYFLITKQNPPEALLELTPVRGLNG 384
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR-----KCDYQFVEVMACPSGCLNGG 400
+E +LE+ G + A+C G N + I+ +V+ Y F+E M+CP GC+ GG
Sbjct: 385 VKEASLEIPGAGKINVAVCSGLGNARKILDQVREDIKQGLPPRYHFIEFMSCPGGCIGGG 444
Query: 401 GQIKPKPGQSPKELIK--TLETIYLENVMLADPFKNPL------VRSLYDEWLEQPGSEK 452
GQ P+ P + ++ L ++Y M A +K L V +Y + E P SE
Sbjct: 445 GQ--PRTALPPSDAVRQARLASLY---TMDAKIYKKRLSHENQEVIQIYQNYFEHPMSEL 499
Query: 453 AKKHVHTEYHPVVKSITAQ 471
A++ +HTEY K +TA+
Sbjct: 500 AEELLHTEYTDRGKHLTAK 518
>gi|209170690|gb|ACI42788.1| [FeFe]-hydrogenase [Clostridium tyrobutyricum]
Length = 577
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 197/417 (47%), Gaps = 46/417 (11%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
+CL C C+ + L EK +D + + K VI++++P R ++ E F +
Sbjct: 187 NCLLCGQCVIACPVAALTEKPHIDRVKKALADPKKHVIVAMAPSIRTAIGELFKMGFGKD 246
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL T L+ L IFD + D+T++E E + R K + PM +S
Sbjct: 247 VTGKLYTALRMLNFDKIFDINFGADMTIMEEATELLERIK---------NGGPFPMFTSC 297
Query: 175 CPGWICYAEKQLGSY---ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
CP W+ +Q +Y +L +SS KSPQQ G K + G ++Y VTVMPC
Sbjct: 298 CPAWV----RQAQNYYPELLKNLSSAKSPQQIFGTATKTYYPAISGIEAKDVYTVTVMPC 353
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 291
DKK EA L E G+ +D+V+TT E+ +I+ + F +LE+
Sbjct: 354 NDKKYEA-------DLPEMEVN----GMRC--IDAVITTRELAKMIKDAKIKFTSLEDGK 400
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVA 350
D + G ++G ++GG E R A K ++ ++++ +R + +E
Sbjct: 401 ADPAMGEYSGAGAIFG---TTGGVMEAALRTAKDFSENKELK-NIDYTEVRGFNGIKEAT 456
Query: 351 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 410
+E+ GK+ A+ G NL ++ KM++ Y F+EVMACP GC+NGGGQ P
Sbjct: 457 VELSGKSY-NVAVINGAANLFKFMKSDKMKEKQYHFIEVMACPGGCINGGGQ--PHINAM 513
Query: 411 PKELI--KTLETIYL----ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+EL+ K L L +N+ +NP + ++Y + PG A K +H Y
Sbjct: 514 DRELVDYKVLRASVLYNQDKNLPRRKSHENPAILNMYGSYFGNPGQGLAHKLLHHNY 570
>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
Length = 644
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 212/420 (50%), Gaps = 42/420 (10%)
Query: 54 ISLKDCLACSGC--------ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
I C C C ITS +L FL ++ K VI ++P R ++
Sbjct: 249 IDYTRCTHCGACLSTCPVNAITSGNNSIL-------FLRDLATPNKIVITQMAPSVRVAI 301
Query: 105 AEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E FG + V KK+ L+ LGV +FDT+ + DLT++E NE R K+ E D E
Sbjct: 302 GEAFGFETGANVEKKIAAGLRKLGVDYVFDTTWAADLTIMEEANELAERVKRYLEGDKE- 360
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LP+L+S CP W+ + E+ G +L S+ KSP Q A K ++ G ++I
Sbjct: 361 --VKLPILTSCCPAWVKFIEQNYGD-MLDVPSTSKSPMQMFAAVAKDLWGKEKGLSREQI 417
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V +MPC KK EA+R +F L+ +VD V+TT E++D+ + ++
Sbjct: 418 TSVAIMPCIAKKYEASRPEFSRGLNY-------------DVDYVITTTELIDIFKKSNID 464
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
LE+ +D+++ G ++G +GG E R A + + G+ ++ ++EF ++R
Sbjct: 465 LSQLEDEEIDQVMGEYTGAGIIFG---RTGGVIEAATRTAVELITGQRVD-NIEFTSLRG 520
Query: 344 SD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
D FR L V G L+ + YG + + ++ K++ + Y +E+MAC GC+ GGGQ
Sbjct: 521 FDGFRSCELTV-GDLTLRIGVTYGLKEARKMLDKIRSGEEFYHAIEIMACTGGCIGGGGQ 579
Query: 403 IKPKPG-QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K ++ K ++ L I ++ L NP V ++Y+++L+ P S KA++ +HT Y
Sbjct: 580 PRAKKREETIKSRMEGLNEID-RSLPLRRSNDNPAVLAIYEKFLDYPLSNKAQELLHTRY 638
>gi|451820121|ref|YP_007456322.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786100|gb|AGF57068.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 587
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 209/423 (49%), Gaps = 30/423 (7%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGI 110
+I DC C CIT L ++ ++ F + + K ++ ++P RA+ E G+
Sbjct: 182 RIKNSDCSLCGQCITHCPVGALRERDDTVKAFSALADPDKITVVQIAPAVRAAWGEALGL 241
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ + +L + L+ +G IFDT+ S DLT++E NEFI R + N+ P
Sbjct: 242 TREEATVNRLVSALRRMGFNYIFDTNFSADLTIMEEGNEFIERISN-------KENNIFP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + Q ++ +S+ KSPQQ GA K + + L P +I+ ++VM
Sbjct: 295 MFTSCCPGWVRFLKSQYPD-MVEQLSTAKSPQQMFGAVAKSYYAKILNVDPSKIFSISVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA + D G +VD VLTT E+ +I+ + + + L+E
Sbjct: 354 PCVAKKHEA-----------EIPVMNDAGAG-QDVDLVLTTREIERMIRAEHIICKDLKE 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D L G ++G S+GG E R A + GK + FK +R S +E
Sbjct: 402 EEFDMPLGVSSGAGVIFG---STGGVMEAALRSAHFIITGKNPDPD-AFKEVRISGGIKE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
E+ G ++ K A+ G N + +V+ ++ K Y FVEVMACP GC GGGQ
Sbjct: 458 AVFEIAGSSI-KVAVVSGLGNARKLVKAIRKGKAHYDFVEVMACPGGCSGGGGQPIADGL 516
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 468
+ KE L + + L +NP + LY +++E+P S KA K +HT+++ + +
Sbjct: 517 ELGKERADNLYKLD-KKAELRFSHENPSIIQLYADYMEKPLSHKAHKLLHTDHNAWIMPL 575
Query: 469 TAQ 471
+ +
Sbjct: 576 SPR 578
>gi|139438951|ref|ZP_01772411.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC
25986]
gi|133775662|gb|EBA39482.1| hydrogenase, Fe-only [Collinsella aerofaciens ATCC 25986]
Length = 603
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 209/420 (49%), Gaps = 39/420 (9%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGIS 111
I DC+AC CIT T L ++ E F + + K V++ ++P R++ E GIS
Sbjct: 202 IGKTDCVACGQCITHCPTGALRERDDTETVFDAIADPDKIVLVQIAPAVRSAWGEELGIS 261
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ ++L L+ +G + +FDT S DLT++E +E + R ++ + E + PM
Sbjct: 262 REEATVERLACALRRVGFEYVFDTDFSADLTIMEEGSELLERLGKAAKG--EGDSRGWPM 319
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + + ++ +S+ KSPQQ GA K + + LG P+ ++ V+VMP
Sbjct: 320 FTSCCPGWVRFVKARYPEFV-DRLSTSKSPQQMFGAIAKTYYAKVLGVEPERLFVVSVMP 378
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E A + + + P+VD LT E++ +I+ V+ + L E
Sbjct: 379 CTAKKAECALPSMMGEDGA------------PDVDVALTVREMVRMIRASHVSVDTLVEE 426
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
PLD L G ++G ++GG E R A + GK + F +R + ++E
Sbjct: 427 PLDTPLGFGTGAGVIFG---ATGGVMEAAVRSAYYLVTGKNPDADF-FTDVRGLEGWKEA 482
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC-------LNGGGQ 402
+++G T ++ A+ +G N ++ ++ + Y FVEVMACP GC ++ G +
Sbjct: 483 VADIDG-TKVRVAVAHGLGNAARLLDAIRDGRVRYDFVEVMACPGGCVGGGGQPIHDGCE 541
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ + GQ L + + +NP V++ Y E+L P S A++ +HT++H
Sbjct: 542 LAAERGQVLWSLDAKADIRF--------SHENPDVQACYREFLGAPLSPLAEELLHTDHH 593
>gi|153807872|ref|ZP_01960540.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185]
gi|149129481|gb|EDM20695.1| hydrogenase, Fe-only [Bacteroides caccae ATCC 43185]
Length = 459
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P V
Sbjct: 68 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTV 127
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ L+ LG +FDT + DLT++E +E + R D + LP+L+S
Sbjct: 128 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTCYLNGD---KSVRLPILTSC 184
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 185 CPAWVNFFEHHFPD-LLDIPSTARSPQQMFGSIAKSYWAKKMGIPKEKLVVVSIMPCLAK 243
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 244 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 290
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R S R + +
Sbjct: 291 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLSGVRRATINL 346
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 347 NGFE-LKIGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEV 403
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P EK++ +HT Y
Sbjct: 404 LYARANALYREDANKPLRKSHENPYIKTLYEEYLGKPLGEKSETLLHTHY 453
>gi|346224264|ref|ZP_08845406.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Anaerophaga thermohalophila DSM 12881]
Length = 596
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 208/420 (49%), Gaps = 40/420 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T + EK ++E I + K V++ +P R +L E + P ++
Sbjct: 194 CTNCGQCVNRCPTGALTEKTYINEVWDAIYDPDKFVVVQTAPAVRIALGEALDMEPGEIV 253
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ +G S+ DT S DLT+IE NE + R K + + D N LPM +S
Sbjct: 254 TGKMVAALRRIGFNSVLDTDFSADLTIIEEGNELLQRLKMALKDKD--PNVKLPMTTSCS 311
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E + L ++S+ KSPQQ GA K +K+G P ++ V+VMPC KK
Sbjct: 312 PGWIKFIEHTFPDF-LEHVSTAKSPQQMFGALAKTFYAKKIGVDPAKMVSVSVMPCTAKK 370
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + Y+D VD V+TT E+ +++ ++F +L + D +
Sbjct: 371 FEANRPEM------RASGYQD-------VDYVVTTRELALMVKQAGIDFSSLPDDDYDSI 417
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI--EGHLEFKTIRN-SDFREVALE 352
+ G ++ G++GG E R + + G+ + EG L +R + RE +++
Sbjct: 418 MGESSGAGVIF---GATGGVMEAALRTVYEVVTGREVPFEG-LNIMPVRGMENVREASVK 473
Query: 353 VEG---------KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+E +K + +G N + ++ V+ K DY F+E+MACP GCL GGGQ
Sbjct: 474 IENPLPEWDFLDGVEVKTCVAHGLSNAKKVMESVRDGKADYHFIEIMACPGGCLGGGGQP 533
Query: 404 KPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P SP+ K E IY E+ + +NP + LYDE+L +P K+ + +HT Y
Sbjct: 534 LP---TSPEIRQKRAEAIYREDAGKKIRKSHENPEIIQLYDEFLIEPLGHKSHELLHTTY 590
>gi|270307598|ref|YP_003329656.1| [Fe] hydrogenase subunit HymC [Dehalococcoides sp. VS]
gi|270153490|gb|ACZ61328.1| [Fe] hydrogenase, Hym C subunit [Dehalococcoides sp. VS]
Length = 573
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 211/416 (50%), Gaps = 41/416 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
C C CI + E+ ++D + I + K V++ +P R SL E G+ + V
Sbjct: 190 CANCGQCILVCPVGAIKERSAVDAVWAAIADPTKHVVVQEAPSVRVSLGEELGLPAGTLV 249
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KK+ L+ LG ++FDT+ + DLT++E +E + R K LP ++S C
Sbjct: 250 AKKMYAALRRLGFDAVFDTNFTADLTIMEEGSELVERVKDG---------GVLPQITSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E + P +SS KSPQQ GA K + +K G P I +V+VMPC KK
Sbjct: 301 PGWVKFMEHYYPE-LAPNVSSAKSPQQMFGAVCKTYYAEKSGIDPKTIINVSVMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + D G + +VD VLTT E+ +I+ ++F +LEE P + +
Sbjct: 360 FECQRPEM-----------NDSGFK--DVDYVLTTRELARMIKEAGLDFASLEEEPAEDL 406
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++ G++GG E R A + G+ +E +L+ + +R + + ++ ++
Sbjct: 407 LGLYTGAATIF---GATGGVMEAAIRSAYTLITGRELE-NLDIEPVRGLEGIKTASVNID 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G +K A+ +G N ++++ ++K Y F+E+MACP GC+ GGGQ P + L
Sbjct: 463 GLE-VKVAVAHGLGNARHLLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSL 517
Query: 415 IKTL-ETIYLENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 465
K E +Y E+ + N V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 518 KKKRGEALYEEDRNMPKRCSHHNTSVEKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|358063560|ref|ZP_09150169.1| hypothetical protein HMPREF9473_02232 [Clostridium hathewayi
WAL-18680]
gi|356698186|gb|EHI59737.1| hypothetical protein HMPREF9473_02232 [Clostridium hathewayi
WAL-18680]
Length = 458
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 204/415 (49%), Gaps = 36/415 (8%)
Query: 59 CLACSGCITSAE----TVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
C+ C C T + E Q + E + + K VI S SP R +L E F + P
Sbjct: 58 CIHCGQCANVCPVDCITEVPEWQKVQEAIDD--KDSIVIFSTSPSVRVALGESFEMEPGS 115
Query: 115 -VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
V K+ L++LG + DT+ S DLT++E NE I R + N +P L+S
Sbjct: 116 FVQDKMVALLRALGADYVLDTNFSADLTIMEEANELIRRIQSD--------NIPIPQLTS 167
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CP W+ + E + +S+ KSP G TIK + +K G P I +V V PC
Sbjct: 168 CCPAWVKFVETFYPEF-KENLSTSKSPIGMQGPTIKTYFAKKQGLDPRRIVNVAVTPCTA 226
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIP---EVDSVLTTGEVLDLIQLKAVNFEALEES 290
KK E RE+ D+ +E L IP ++D V+TT E+ + + + ++F L+
Sbjct: 227 KKFEIRREEMC---DAGKE------LGIPGMRDMDYVITTRELAEWAKSRGIDFTGLKPE 277
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRNSD-FRE 348
D ++ G ++G ++GG E R A L G+ V E L+ + +R + RE
Sbjct: 278 RYDSLMGEASGAGVIFG---NTGGVMEAAVRTAYAVLTGEPVPENLLKLEAVRGMEGIRE 334
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+L + G L A+ YG N + ++ K+K + YQF+EVM CP GC+ GGGQ K
Sbjct: 335 ASLTING-IKLDIAVVYGTANARILLDKIKAGEKFYQFIEVMTCPGGCIGGGGQPKNILA 393
Query: 409 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ K + +Y E++ L +NP + +YDE+ E GSEKA++ +HT Y
Sbjct: 394 DGDEIRRKRISGLYRKDESMKLRLSHENPEITQVYDEFYETSGSEKAERMLHTAY 448
>gi|333979699|ref|YP_004517644.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823180|gb|AEG15843.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 574
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 206/410 (50%), Gaps = 33/410 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C+ C C T + E+ D+ + + + K V++ +P R S+ E FG+ P +
Sbjct: 190 NCVNCGQCSLVCPTAAIHERDETDKVWAALADPEKHVVVQTAPAVRVSIGEMFGLEPGSI 249
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
KL L+ LG +FDT + DLT++E +E I R + + LP+++S
Sbjct: 250 VTGKLVAALRRLGFDKVFDTDFTADLTIMEEGSELIHRLQ---------NGGRLPLITSC 300
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E +LP +S+ KSPQQ GA K + QK G P I+ V++MPC K
Sbjct: 301 SPGWIKFIE-HFYPNLLPNLSTCKSPQQMFGALAKTYYAQKEGIDPARIFVVSIMPCTAK 359
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + YRD VD VLTT E+ +++ ++F++L E D
Sbjct: 360 KYEAGRPEM------NSSGYRD-------VDVVLTTRELGRMLKQAGIDFDSLPEEDYDA 406
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV 353
L G ++ G++GG E R A + + G + L+F+ +R + +E ++ +
Sbjct: 407 PLGISTGAGVIF---GATGGVMEAALRTAYELVTGATLVS-LDFEEVRGLEGVKEASVNL 462
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T LK A+ +G N + I+ V ++ +Y F+E+M CP GC+ GGGQ P +
Sbjct: 463 AG-TELKVAVAHGLGNARKILDAVVNKEREYHFIEIMCCPGGCIGGGGQPVPVDNEIRAR 521
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
I + + + L +NP V++LY E+L +P K+ + +HT Y P
Sbjct: 522 RIAAIYQVD-RQMPLRKSHENPAVQALYREFLGEPLGHKSHELLHTHYTP 570
>gi|169831700|ref|YP_001717682.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
gi|169638544|gb|ACA60050.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
Length = 615
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 211/417 (50%), Gaps = 43/417 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ-- 114
C++C C+ S T + E++ + E I+ + V++ +P + +L E FG+ P+
Sbjct: 214 CISCGQCLMSCPTGALTEREYIHEVWKAIDDPDRQVVVQTAPAIQVTLGEEFGM-PVGTV 272
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ + L+ +G ++F T + DLT++E +E + R + LP++SS
Sbjct: 273 VTGKMVSALRRIGFDTVFSTEFAADLTIMEEAHELLERLE---------GKGDLPLISSC 323
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGW+ + E + L +S+ KSPQ+ +GA +K + +K G P + V VMPC K
Sbjct: 324 SPGWVKFCEHYYPEF-LDNLSTCKSPQEMLGALVKSYYAEKEGLDPARLVTVAVMPCTAK 382
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EAAR + V E RD VD VLTT EV +I+ ++ E LE+ D+
Sbjct: 383 KFEAARPELV-----SREGRRD-------VDFVLTTREVARMIRQAGIDLETLEDGEFDR 430
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L G ++ ++GG E R A G+ + ++FK +R + R + +
Sbjct: 431 PLGIATGAGVIF---AATGGVMEAAIRTAYALTEGEEM-ARVDFKAVRGLNGVRLAEVHL 486
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G+T LK A+ +G +N + ++ ++K +Y F+E+M CP GG +P G +E
Sbjct: 487 RGRT-LKLAVAHGTRNARRLLEQIKA-GAEYHFLEIMGCPG--GCIGGGGQPILGAGRRE 542
Query: 414 LI-----KTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
L K E +Y ++ L +NP VR LY+E+L P S+KAK+ +HT Y P
Sbjct: 543 LAQEYRRKRAEALYSIDLKRELRRAHENPAVRKLYEEYLGHPLSDKAKELLHTTYTP 599
>gi|332296330|ref|YP_004438253.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
gi|332179433|gb|AEE15122.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
Length = 590
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 214/416 (51%), Gaps = 30/416 (7%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQV 115
C+AC C T +LEK + + K V++ +P + ++ E FG+ +
Sbjct: 197 CVACGQCALVCPTGAILEKDDTGTVWKALADPKKHVVVQTAPSTHVTIGEAFGLPVGTDI 256
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ LK LG ++FDT+ S DLT++E E I R K + LP +S
Sbjct: 257 TGKMVAALKRLGFNAVFDTNWSADLTIMEEGYELIHRIK---------NGGVLPQFTSCS 307
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E + +LP+ISS KSPQQ G K + +K G P++I+ V++MPC KK
Sbjct: 308 PGWIKFCE-EFYPDLLPHISSCKSPQQMFGPIAKTYYAEKKGINPEDIFVVSIMPCTAKK 366
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + + TY + +VD VLT+ E++ +I+ ++F L + P D +
Sbjct: 367 YEAARPEM-----NAAATYWNNPNITRDVDVVLTSRELIRMIREAGIDFANLPDEPYDPL 421
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
+ ++ G++GG E R A + + GK + L+F+ +R + +E ++ +
Sbjct: 422 MGEGTGAAQIF---GATGGVMEAALRTAYEVITGKTLP-KLDFEDVRGMKEIKEASVNMN 477
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T +K + + + ++ KV+ + DY F+E+MACP GC+ GGGQ P + +
Sbjct: 478 GLT-VKVLVAHSLGAARQLLDKVRAGELKDYHFIEIMACPGGCIGGGGQPIPTTVEEREN 536
Query: 414 LIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467
IK IY + + + +NP ++++Y E+L++P K+ + +HT Y P KS
Sbjct: 537 RIK---GIYERDKKLKIRKSHENPEIQAIYKEFLKEPLGHKSHQLLHTHYTPRGKS 589
>gi|167745461|ref|ZP_02417588.1| hypothetical protein ANACAC_00152 [Anaerostipes caccae DSM 14662]
gi|167655182|gb|EDR99311.1| hydrogenase, Fe-only [Anaerostipes caccae DSM 14662]
Length = 572
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 213/421 (50%), Gaps = 44/421 (10%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I + DC C CIT L ++ L + ++ K V+ ++P RA+ AE G+S
Sbjct: 183 IRVADCSLCGQCITHCPVGALRERDDTSMLFSALEDENKIVVAQIAPAVRAAWAEQLGLS 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ +K+ T + +G+ +FDT+ S DLT++E +EF+ R Q+ D E PM
Sbjct: 243 REEAPVEKIVTAFRRMGIDYVFDTTFSADLTIMEEGSEFVKRL---QDGDLE----EYPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q I +S+ KSPQQ GA +K + +KLG P+ I+ +++MP
Sbjct: 296 FTSCCPGWVRFIKTQFPDMI-GRLSTAKSPQQMFGAVMKTYFAKKLGVDPERIFTLSIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E ++D E Y ++D VLTT E+ +++ + +N + LE+
Sbjct: 355 CLAKKAER-------EMDLFYEEYAGH-----DIDCVLTTRELDRMLRAEHLNPQFLEKG 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKTIRNSDFRE 348
D G ++G ++GG E R A + G+ + E + ++ + E
Sbjct: 403 EFDSPFETGTGAGVIFG---ATGGVMEAALRSAYFLVTGENPDADAFREIRGVKRQGWTE 459
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC-------LNGGG 401
+V G +++ A+ G N +N++ ++ ++ Y+FVEVMACP GC ++ G
Sbjct: 460 AEFDVAG-NVIRVAVVSGLGNTRNLMEAIRRKEVKYEFVEVMACPGGCAGGGGQPIHDGQ 518
Query: 402 QIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
++ + G S L + E + + NP +++LY+E+ E+P S +A + +HTE+
Sbjct: 519 ELAEERGSSLYFLDRDTEIRFSHD--------NPDIQNLYEEFFEKPLSHRAHQLLHTEH 570
Query: 462 H 462
Sbjct: 571 Q 571
>gi|323701421|ref|ZP_08113095.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|323533680|gb|EGB23545.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
Length = 521
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 218/439 (49%), Gaps = 41/439 (9%)
Query: 51 PVKISLKDCLACSGCITSAET-VMLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHF 108
P+K + C+ C C T + E+ +D+ L IN K V++ +P +R +L E F
Sbjct: 103 PIKDDIT-CVNCGQCTLWCPTGAITERDDIDKVLKAINDKNLHVVVQTAPATRVALGEEF 161
Query: 109 GISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS 167
G+ + + K LK LG ++FDT+ + DLT++E E + R +
Sbjct: 162 GMPAGSIVEGKQVAALKKLGFDAVFDTNFTADLTIMEEGTELVKRITGELKK-------P 214
Query: 168 LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 227
LP +S PGW+ + E +L ++SS KSPQQ +GA +K + ++ G P++I+ V+
Sbjct: 215 LPQFTSCSPGWVKFCE-YFYPDLLEHMSSAKSPQQMMGAVVKSYYAKQKGIDPEKIFSVS 273
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK E R + D+ ++ + I +VD VLTT E+ +I+ +NF L
Sbjct: 274 IMPCTAKKYECQRPEMN---DAGQKAGKP---NIRDVDVVLTTRELARMIKRAGINFNEL 327
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SD 345
E++ D ML ++ G++GG E R A + + E LE +R +
Sbjct: 328 EDAQYDSMLGEGTGAAVIF---GTTGGVMEAAVRSAYFLITKQNPPEALLELTPVRGLNG 384
Query: 346 FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR-----KCDYQFVEVMACPSGCLNGG 400
+E +LE+ G + A+C G N + I+ +V+ Y F+E M+CP GC+ GG
Sbjct: 385 VKEASLEIPGAGKINVAVCSGLGNARKILDQVREDIKQGLPPRYHFIEFMSCPGGCIGGG 444
Query: 401 GQIKPKPGQSPKELIK--TLETIYLENVMLADPFKNPL------VRSLYDEWLEQPGSEK 452
GQ P+ P + ++ L ++Y M A +K L V +Y + E P SE
Sbjct: 445 GQ--PRTALPPSDAVRQARLASLY---TMDAKIYKKRLSHENQEVIQIYQNYFEHPMSEL 499
Query: 453 AKKHVHTEYHPVVKSITAQ 471
A++ +HTEY K +TA+
Sbjct: 500 AEELLHTEYTDRGKHLTAK 518
>gi|74229867|gb|ABA00462.1| Fe-hydrogenase large subunit, partial [Ethanoligenens harbinense
YUAN-3]
Length = 347
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 172/349 (49%), Gaps = 29/349 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDE-FLSNINKGKAVIISLSPQSRASLAEHFGI 110
K+ DC C CIT L E+ D+ F + + ++ ++P RA+ E G+
Sbjct: 24 KMEESDCTLCGQCITHCPVGALRERDDTDKAFAALADPDTITVVQIAPAVRAAWGESLGL 83
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
Q K+L L+ +G + IFDT+ S DLT++E +EF+A+ + R N + P
Sbjct: 84 PREQATAKRLVAALRKIGFRYIFDTTFSADLTIMEEGSEFLAKLRN-------RENETFP 136
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + Q + +S+ KSPQQ GA K + + L P+ I ++VM
Sbjct: 137 MFTSCCPGWVRFLKSQYPDMVR-QLSTAKSPQQMFGAITKSYYAKLLDVEPERICSISVM 195
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EAA D P+VD VLTT E+ +I+ + ++ L E
Sbjct: 196 PCLAKKQEAALPTM------------DTAGAGPDVDIVLTTREIDRMIRAEDIHPGELPE 243
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D+ L G ++ G++GG E R A + GK E F +R D ++E
Sbjct: 244 EEFDQPLGVGSGAGVIF---GATGGVMEAALRSAYYLVTGKNPEPD-AFGNVRGMDGWKE 299
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 397
A+++ G T ++ A+ G N + +V ++ Y FVE+MACP GC+
Sbjct: 300 AAIDIAGTT-VRVAVASGLGNARRLVEALRKGDVQYDFVEIMACPGGCI 347
>gi|345856520|ref|ZP_08808998.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344330362|gb|EGW41662.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 580
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 201/411 (48%), Gaps = 39/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C CI T + E +D+ +N + V++ +P R +L E F + P +
Sbjct: 195 CTFCGQCIAVCPTGALTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFDLEPGTIV 254
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT + DLT++E E + R + LP+L+S C
Sbjct: 255 TGKMVGALRRLGFDRVFDTDFAADLTIMEEATELVHRIQH---------GGRLPLLTSCC 305
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP + +G IK + + LG P I V+VMPC KK
Sbjct: 306 PAWVKFFEHQFPD-LLDIPSTCKSPHEMLGVLIKSYYAKTLGIDPKSITVVSVMPCVAKK 364
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + + E +VD V+TT E+ +I+ +++F+ L++ D
Sbjct: 365 YEAARPELA------------QSAETADVDIVITTRELARMIREASIHFDHLKDKEFDHP 412
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++G ++GG E R A + L G+ +E +EF+ +R D +E + +
Sbjct: 413 LGESTGAAIIFG---ATGGVLEAALRTAYEVLTGETLE-KVEFEALRGMDGIKEAVIPIA 468
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ + A+ +G N + ++ K+K + +Y +E+MACP GC+ GGGQ P + L
Sbjct: 469 GRDY-RIAVIHGLGNARTVLEKIKAGESNYDVIEIMACPGGCIGGGGQ--PYHHGNMDIL 525
Query: 415 IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IY E+ A P + N + SLY ++L +P +KA + +HT Y
Sbjct: 526 QARAAAIYRED--RAKPLRKSHENLAIVSLYKDYLGEPYGKKAHQLLHTSY 574
>gi|182625936|ref|ZP_02953701.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
gi|177908849|gb|EDT71347.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
Length = 696
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 213/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + +S K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQNAISY--KDKIVIVSTSPAVRVSLGEEFNMNNGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N LP +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P WI YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWIKYAE-TFHPEILDHISTSKSPIGMQGPTIKTYFAKKMGIDPSKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ + YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIVVIYGTENASKFISKMKNSDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y + + L ++N ++ LY+E+ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSSMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTTYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|392427650|ref|YP_006468644.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
gi|391357613|gb|AFM43312.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
Length = 580
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 202/414 (48%), Gaps = 45/414 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C CI T ++E +D+ +N + VI+ +P R +L E FG+ P +
Sbjct: 195 CTFCGQCIAVCPTGALMELDQVDKVWKALNDPTRFVIVETAPAVRVALGEGFGLEPGTIV 254
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT D+T++E E I R K LP+L+S C
Sbjct: 255 TGKMVAALRRLGFDRVFDTEFGADVTIMEEATELIHRLKH---------RGRLPILTSCC 305
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP + +G K + G P +I V+VMPC KK
Sbjct: 306 PAWVKFFEHQFPD-LLDIPSTCKSPHEMLGVLAKSYYADTYGLDPQKITVVSVMPCVAKK 364
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + Q+ P+VD V+TT E+ +I+ ++FE L + D
Sbjct: 365 YEAARPEL-----GQDPV-------TPDVDIVITTRELSRMIREAGIHFERLNDEEFDHP 412
Query: 296 LTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVAL 351
L G G A G++GG E R A + L GK +E ++EF+++R D +E +
Sbjct: 413 L------GESTGAAVVFGTTGGVIEAALRTAYEWLTGKPLE-NVEFESLRGMDGIKEALV 465
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
+EG+ K A+ +G N + I+ K++ + Y +E+MACP GC+ GGGQ P +
Sbjct: 466 PIEGQDF-KIAVTHGLGNARTILEKIQSGEAQYDAIEIMACPGGCIGGGGQ--PYHHGNV 522
Query: 412 KELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L IY E+ + P + NP V LY ++ +P E+A + +HT +
Sbjct: 523 EILKARAAAIYKED--RSKPRRKSHENPAVLELYKNYIGEPYGERAHELLHTSF 574
>gi|423217815|ref|ZP_17204311.1| hydrogenase, Fe-only [Bacteroides caccae CL03T12C61]
gi|392627318|gb|EIY21353.1| hydrogenase, Fe-only [Bacteroides caccae CL03T12C61]
Length = 588
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P V
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTV 256
Query: 116 FK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ L+ LG +FDT + DLT++E +E + R D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTCYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-LLDIPSTARSPQQMFGSIAKSYWAKKMGIPKEKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R S R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLSGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKIGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEV 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEEYLGKPLGEKSETLLHTHY 582
>gi|169343832|ref|ZP_02864829.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
gi|169297952|gb|EDS80043.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
Length = 696
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 215/426 (50%), Gaps = 39/426 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVF 116
+C C+ C TS+ T + + + + + +S+ K K VI+S SP R SL E F ++
Sbjct: 60 NCGQCANVCPTSSITEVFDYKKVQDAISD--KDKIVIVSTSPAIRVSLGEEFNMNDGSFV 117
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ L+ LG + DT+ + D+T++E +E + R ++N L +S C
Sbjct: 118 QGKMIALLRKLGFDYVLDTNFAADMTIVEEASELVERIT--------KNNKPLSQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ YAE IL +IS+ KSP G TIK + +K+G P +I +V + PC KK
Sbjct: 170 PAWVKYAE-TFHPEILEHISTSKSPIGMQGPTIKTYFAKKMGIDPYKIINVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE ++++ Y G+E + ++D V+TT EV + K ++F +LE+S DK
Sbjct: 229 FEIKRE----EMNASGRYY---GIEDMRDMDYVITTREVAIWAKEKGIDFNSLEDSNFDK 281
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDFR 347
++ G ++ ++GG E R A K + + +E + +R + F+
Sbjct: 282 LMGEASGAGVIFA---NTGGVMEAALRTAYKYITKEDPPKDFYDLESVRGMEGVREASFK 338
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
LE+ A+ YG +N + K+K Y F+EVM CP GC+ GGGQ K K
Sbjct: 339 INDLEI------NIAVIYGTENASKFISKMKNSDKKYHFIEVMTCPGGCIGGGGQPKDKK 392
Query: 408 GQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 465
+ K K ++ +Y N+ L ++N ++ LY+E+ E+P S A++ +HT Y
Sbjct: 393 FEGDKLREKRIDGLYKRDSNMKLRVSYENEEIKKLYEEFYEKPLSNLAEEMLHTIYFDRS 452
Query: 466 KSITAQ 471
K + +
Sbjct: 453 KDLGGE 458
>gi|188588530|ref|YP_001921030.1| iron hydrogenase 1 [Clostridium botulinum E3 str. Alaska E43]
gi|188498811|gb|ACD51947.1| iron hydrogenase 1 [Clostridium botulinum E3 str. Alaska E43]
Length = 582
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 209/417 (50%), Gaps = 38/417 (9%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT T L ++ + ++ NK K ++ ++P RAS E G+
Sbjct: 182 KIQDSDCSLCGQCITHCPTGALRERDNTQKAFDVLSNKDKITVLQIAPAVRASWGESLGL 241
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ + K+L + L+ +G IFDT+ + DLT++E +EF+ R + +N++LP
Sbjct: 242 TKEKATVKRLVSALRKIGFDYIFDTNFAADLTIMEEGSEFLERLQ---------NNTNLP 292
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CP W+ + + Q + +S+ KSPQQ GA K + + L P +IY +++M
Sbjct: 293 MFTSCCPAWVRFLKSQYPD-MTKMLSTAKSPQQMFGAIAKSYYAKLLNVDPSKIYCISIM 351
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA + D G ++D LTT EV +I+ + + L E
Sbjct: 352 PCIAKKHEA-----------EIPIMNDAGYG-QDIDLCLTTREVERMIRSEHIIANDLNE 399
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
S D L G ++G S+GG E R A G + + FK IR + +E
Sbjct: 400 SDFDTPLGIGSGAGVIFG---STGGVMEAALRTAYFLTCGNNPDPN-AFKEIRGMNGIKE 455
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ E+ T LK A+ G N +N+++ ++ Y F+EVMACP GC GGGQ P
Sbjct: 456 ASFEINN-TKLKVAVVSGLNNARNLIKNLRKGNVYYDFIEVMACPGGCSGGGGQ----PI 510
Query: 409 QSPKELIKTLETIYLENVMLAD---PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ EL +T + E L+D +NP + ++Y E+LE+P S + K +HT+++
Sbjct: 511 KDGIELAETRSKMLYELDELSDIRFSHENPSILNVYKEFLEKPLSNVSHKLLHTDHN 567
>gi|331086277|ref|ZP_08335357.1| hypothetical protein HMPREF0987_01660 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406043|gb|EGG85566.1| hypothetical protein HMPREF0987_01660 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 584
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/419 (30%), Positives = 211/419 (50%), Gaps = 37/419 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT L E+ ++ S + NK K ++ ++P RA+ E G+
Sbjct: 185 KIEDADCSLCGQCITHCPVGALRERDDTEKVWSALANKKKITVVQIAPAVRAAWGEALGM 244
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ K+ L+ +G +FDT+ S DLT++E EF+ R + + D P
Sbjct: 245 KREEATVGKIVDALRKIGFDYVFDTAFSADLTIMEEGAEFLERLQNGELKDR-------P 297
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGWI + + Q +++P +SS KSPQQ GA +K + + +G P+ I V++M
Sbjct: 298 MFTSCCPGWIRFIKSQY-PHLVPQLSSAKSPQQMFGAVMKTYFAKSIGVDPENICTVSIM 356
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E E F E Y +VD VLTT E++ +I+ + L +
Sbjct: 357 PCLAKKGERNMELFY-------EEYAGH-----DVDIVLTTRELVRMIRSAHIAPSTLVD 404
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
+P D ++ + G ++ G++GG E R A + GK + F +R+++
Sbjct: 405 APCDTLMQDGSGAGVIF---GATGGVMEAALRSAYFLVTGKNPDAD-AFSVVRSNNLNHG 460
Query: 350 ALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
A+ E G T+++ A+ G N + ++ ++ Y FVEVMACP GC+ GGGQ
Sbjct: 461 AVCAEIPIGDTVVRAAVVSGLGNARQLIEMIERGDVHYDFVEVMACPGGCVGGGGQ---- 516
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P +EL ++ + +Y +N + +N V LY++++ +P S KA +HT+++
Sbjct: 517 PIHDGQELALERGKNLYFLDKNANIRFSHENKDVLKLYEDFMGKPLSHKAHLLLHTDHN 575
>gi|313898096|ref|ZP_07831635.1| rubredoxin [Clostridium sp. HGF2]
gi|373125118|ref|ZP_09538956.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
gi|422329339|ref|ZP_16410365.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
gi|312957124|gb|EFR38753.1| rubredoxin [Clostridium sp. HGF2]
gi|371657069|gb|EHO22379.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
gi|371658339|gb|EHO23621.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
Length = 571
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 200/410 (48%), Gaps = 27/410 (6%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C C T + E Q + S I + K VI SP R SL E FG+ P V
Sbjct: 58 CIHCGQCANVCPTGAITEIQDWMQVQSVIQDSSKTVIAITSPSVRVSLGEEFGMQPGSYV 117
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K++ L++LG +FDT+ + DLT++E +E I R + Q LP +S C
Sbjct: 118 EKQMVGSLRALGFDYVFDTTFAADLTIMEEASELIERIQTKQ---------PLPQFTSCC 168
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE +LP IS+ KSP T+K +K D+IY V + PC KK
Sbjct: 169 PAWVKFAETYYPE-LLPNISTSKSPISMFAPTVKTWFAEKESLDADDIYVVAITPCTAKK 227
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E RE+ D+ R G + D V+TT E+ ++ ++ E++EES D +
Sbjct: 228 FEIMREELS---DAANYLDRKPG---QDCDRVVTTRELASWMRACNLDLESVEESDYDSL 281
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSDFREVALEVE 354
+ G ++G ++GG E R A L K E L+ + +R + + A
Sbjct: 282 MPRGSGAGIIFG---NTGGVMEAAIRSAYYFLTKKQPQEDLLQLQAVRGLEGVKTAELTI 338
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
+ LK A+ +G + + + +K + FVEVM CP GC++GGGQ K G+ +
Sbjct: 339 QELPLKVAVVHGTDHARKFLHHIKESGEHFDFVEVMTCPGGCISGGGQTK-HIGEDMDTV 397
Query: 415 IKT-LETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K ++++Y ++ + L + NP ++ +Y+E+ +P S+ A+ +HT Y
Sbjct: 398 RKARIQSLYDKDSTITLRNSHDNPHIQQVYEEFYGKPLSDLAEALLHTNY 447
>gi|239904887|ref|YP_002951625.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239794750|dbj|BAH73739.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 585
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 206/420 (49%), Gaps = 31/420 (7%)
Query: 49 AEPVKISLKD--CLACSGCITSAETVML--EKQSLDEFLSNINKGKAVIISLSPQSRASL 104
A +++L D C C C+ L S D + + K VI+ +P RA+L
Sbjct: 184 APAFEMNLADTVCTNCGQCVAVCPVGALVENDNSWDVVDALADPDKVVIVQTAPAVRAAL 243
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E GI+P V K+ L+ LG IFDT + DLT++E +EF+ R + D
Sbjct: 244 GEDLGIAPGTSVTGKMAAALRRLGFDHIFDTDFAADLTIMEEGSEFLDRLTRYLGGD--- 300
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+ LP+L+S CPGW+ + E +L S+ KSPQQ GA K + LG D++
Sbjct: 301 QTAKLPILTSCCPGWVKFFEHNFQD-MLDVPSTAKSPQQMFGAIAKTYYADMLGIPRDKL 359
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK E AR + F +D P+VD V++T E+ LI+ ++
Sbjct: 360 VVVSVMPCLAKKYERARPE--FSVDGN-----------PDVDIVISTRELARLIKRMNID 406
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F +L + D L ++GV +GG E R A + G+ ++ ++F+ +R
Sbjct: 407 FASLPDEDFDAPLGESTGAAPIFGV---TGGVIEAALRTAYELATGETLQ-KVDFEDVRG 462
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
D +VA G L+ + +G N + ++ +V+ + + +EVMACP GC+ GGGQ
Sbjct: 463 MDGVKVATVQVGPHELRIGIAHGLGNARKLLNRVREGET-FHAIEVMACPGGCIGGGGQ- 520
Query: 404 KPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + L + +Y E+ L +NP + LY+++L +P SEK+ +HT Y
Sbjct: 521 -PYHHGDIELLKLRTQVLYAEDAGKPLRKSHQNPYIIELYEKFLGKPLSEKSHHLLHTHY 579
>gi|330836325|ref|YP_004410966.1| hydrogenase, Fe-only [Sphaerochaeta coccoides DSM 17374]
gi|329748228|gb|AEC01584.1| hydrogenase, Fe-only [Sphaerochaeta coccoides DSM 17374]
Length = 577
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/419 (30%), Positives = 207/419 (49%), Gaps = 40/419 (9%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGI 110
KI+ DC C CIT L ++ + F + N K +I ++P RA+ E G+
Sbjct: 182 KITDADCALCGQCITHCPVGALRERDDTQRMFQAIANPKKITVIQIAPAVRAAWGEALGL 241
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ K+L L+ +G +FDT+ S DLT++E +EF+ R R++ P
Sbjct: 242 PREKATVKRLVAALRKIGFDYVFDTTFSADLTIMEEGHEFLERLAG-------RNDHPWP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + Q + +S+ KSPQQ GA K + Q LG P +I+ V++M
Sbjct: 295 MFTSCCPGWVRFIKSQYPD-MTENLSTAKSPQQMFGAVAKTYYAQLLGANPADIFSVSIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA E ++ +VD VLTT E++ +I+ + ++ ++LEE
Sbjct: 354 PCVAKKSEA------------ELPTMNDAEAAQDVDLVLTTREIVRMIRAEKIDVKSLEE 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
D L G ++G ++GG E R A + K E F+ +R D ++E
Sbjct: 402 EEFDSPLGVGTGAGVIFG---ATGGVMEAALRSAYYLVTKKNPEAD-AFRDVRGMDGWKE 457
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
++ G ++ A+ G N + ++ V+ K Y FVEVMACP GC+ GGGQ P
Sbjct: 458 ATFDIAG-IPVRVAVVSGLANTRRLMEHVRSGKSSYDFVEVMACPGGCVGGGGQ----PI 512
Query: 409 QSPKELIKT-LETIY----LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+EL T + +Y ++N+ + +NP V Y+ + +P K + +HT++H
Sbjct: 513 WDGEELASTRADVLYGLDKVDNLRFS--HENPSVLKAYESFFGKPLGHKCHELLHTDHH 569
>gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|403253640|ref|ZP_10919941.1| Fe-hydrogenase, subunit alpha [Thermotoga sp. EMP]
gi|418045482|ref|ZP_12683577.1| Ferredoxin hydrogenase [Thermotoga maritima MSB8]
gi|4981990|gb|AAD36496.1|AE001794_12 Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [Thermotoga maritima MSB8]
gi|351676367|gb|EHA59520.1| Ferredoxin hydrogenase [Thermotoga maritima MSB8]
gi|402811174|gb|EJX25662.1| Fe-hydrogenase, subunit alpha [Thermotoga sp. EMP]
Length = 645
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 202/414 (48%), Gaps = 56/414 (13%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
+C+ C C+ T L + +D+ + + K VI ++P RA++ E FGI + +
Sbjct: 185 ECVLCGQCVAYCPTGALSIRNDIDKLIEALESDKIVIGMIAPAVRAAIQEEFGIDEDVAM 244
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+KL +FLK++G +FD S DL E +EF R K+ + LP +S C
Sbjct: 245 AEKLVSFLKTIGFDKVFDVSFGADLVAYEEAHEFYERLKKGER---------LPQFTSCC 295
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE Y L +SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK
Sbjct: 296 PAWVKHAEHTYPQY-LQNLSSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKK 354
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ EG+ VD VLTT E+ LI++ ++ +E P D+
Sbjct: 355 FEAEREEH-------------EGI----VDIVLTTRELAQLIKMSRIDINRVEPQPFDRP 397
Query: 296 LTNVDDEGHLYGVAGSSG---GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
YGV+ +G G A VF L ++ ++ K+ + R +
Sbjct: 398 ----------YGVSSQAGLGFGKAGGVFSCVLSVLNEEIGIEKVDVKSPEDG-IRVAEVT 446
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++ T K A+ YG ++ + + K D + +EVMAC GC+ GGGQ P + +
Sbjct: 447 LKDGTSFKGAVIYGLGKVKKFLEERK----DVEIIEVMACNYGCVGGGGQPYPNDSRIRE 502
Query: 413 ELIKTL-ETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH--VHTEYHP 463
K L +T+ +++++ P +N + LY+E L+ ++ +H +HT Y P
Sbjct: 503 HRAKVLRDTMGIKSLL--TPVENLFLMKLYEEDLK----DEHTRHEILHTTYRP 550
>gi|251780559|ref|ZP_04823479.1| iron hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243084874|gb|EES50764.1| iron hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 582
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 132/417 (31%), Positives = 208/417 (49%), Gaps = 38/417 (9%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT T L ++ + ++ NK K ++ ++P RAS E G+
Sbjct: 182 KIQDSDCSLCGQCITHCPTGALRERDNTQKAFDVLSNKDKITVLQIAPAVRASWGESLGL 241
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ + K+L + L+ +G IFDT+ + DLT++E +EF+ R K +N++LP
Sbjct: 242 TKEKATVKRLVSALRKIGFDYIFDTNFAADLTIMEEGSEFLERLK---------NNTNLP 292
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CP W+ + + Q + +S+ KSPQQ GA K + + L P +IY +++M
Sbjct: 293 MFTSCCPAWVRFLKSQYPD-MTKMLSTAKSPQQMFGAIAKSYYAKLLNVDPSKIYCISIM 351
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA + D G ++D LTT EV +I+ + + L E
Sbjct: 352 PCIAKKHEA-----------EIPIMNDAGYG-QDIDLCLTTREVERMIRSEHIIANDLNE 399
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
S D L G ++G S+GG E R A G + + FK IR + +E
Sbjct: 400 SDFDTPLGIGSGAGVIFG---STGGVMEAALRTAYFLTCGNNPDPN-AFKEIRGMNGIKE 455
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ E+ T LK A+ G N +N+++ ++ Y F+EVMACP GC GGGQ P
Sbjct: 456 ASFEINN-TKLKVAVVSGLNNARNLIKNLRKGNAYYDFIEVMACPGGCSGGGGQ----PI 510
Query: 409 QSPKELIKTLETIYLENVMLAD---PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ EL +T E L+D +NP + ++Y E+LE+P S + K +HT+++
Sbjct: 511 KDGIELAETRSKKLYELDELSDIRFSHENPSILNVYKEFLEKPLSNVSHKLLHTDHN 567
>gi|150020388|ref|YP_001305742.1| hydrogenase large subunit [Thermosipho melanesiensis BI429]
gi|149792909|gb|ABR30357.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis
BI429]
Length = 653
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 197/408 (48%), Gaps = 46/408 (11%)
Query: 59 CLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVF 116
C+ C C+ T L + + + + + K VI ++P RAS+ E G+ +
Sbjct: 186 CVLCGQCVAHCPTGALTFRNDIQKVYKAMEEEKFVIGMIAPAVRASIQEELGLDGDVVTA 245
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
++ FLK +G K +FD S + DL E +EF R ++ ++ LP +S CP
Sbjct: 246 GRIVNFLKMIGFKKVFDVSFAADLVAYEEAHEFKERLERGEK---------LPQFTSCCP 296
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GW+ +AE +L +SSVKSPQQ +G+ IK +++G P +I+ V++MPC KK
Sbjct: 297 GWVKFAEHNYPE-LLDNLSSVKSPQQALGSVIKRIYAKEMGIDPKDIFLVSIMPCTAKKF 355
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA RE+F EVD V+TT E+ +I+ + +++ P D+
Sbjct: 356 EAEREEFA-----------------GEVDVVITTKELSQIIRSSGFDLKSIPPIPFDRP- 397
Query: 297 TNVDDEGHLYGV---AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 353
YG+ AG S G VF K L ++ ++E K + A
Sbjct: 398 ---------YGLSSQAGLSFGKTGGVFSSVLKVLNDEIGLENVETKEVEKGIRITNATTK 448
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+GKT + + +G N++ ++ K+ D VEVMAC GC+ GGGQ P + +
Sbjct: 449 DGKT-INGVVVFGLGNVRKVMEKLNDWNVD--IVEVMACDYGCIGGGGQPYPNDTEIRIK 505
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
K L + +V+++ P +N + SLY+ L+ P S ++ K +HT Y
Sbjct: 506 RAKILNEVVGIDVLIS-PTENYHMLSLYENHLKAPLSHESHKLLHTTY 552
>gi|302389268|ref|YP_003825089.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
gi|302199896|gb|ADL07466.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
Length = 591
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 226/469 (48%), Gaps = 40/469 (8%)
Query: 3 EKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKD--CL 60
+ FSP++ + D S + + CV + K P A +SL D C+
Sbjct: 135 DDFSPSI-VRDTSKCVL-CRRCVSTCHKVQGVGVISPNHRGFETMVAPVFDMSLADVACV 192
Query: 61 ACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF-K 117
C CI + L EK D + + K VI+ ++P R SL E FG+ + K
Sbjct: 193 NCGQCILACPVGALKEKDDTDRVWKALADPEKHVIVQIAPAVRVSLGEEFGLGRGAIVTK 252
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
K+ L+ +G +FDT S DLT++E +EFI R + LP+++S PG
Sbjct: 253 KIPAALRRMGFDRVFDTDFSADLTIMEEGHEFIERLQH---------GGKLPLITSCSPG 303
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
WI + E + L +S+ KSPQQ GA K + QK+G P +I+ V++MPC KK E
Sbjct: 304 WIKFCEHYYPEF-LENLSTCKSPQQMFGAVAKTYYAQKVGIDPSKIFVVSIMPCTAKKYE 362
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
R + + Y+D VD VLTT E+ +++ +N A+ + D L
Sbjct: 363 CQRPEM------RSSGYQD-------VDVVLTTRELSRMLKEAGINLAAMPDEDFDDPLG 409
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGK 356
G ++ G++GG E R + + G+ ++ +EF +R + +E ++++G
Sbjct: 410 ISTGAGAIF---GATGGVMEAALRTVYEVMTGRELK-DVEFTEVRGVEGIKEATIDIDG- 464
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
+ A+ +G N + ++ ++K + Y FVE+M CP GC+ GGGQ G+ + +
Sbjct: 465 VKVNVAVAHGLGNARKLLDRIKSGEASYHFVEIMGCPGGCVGGGGQPILSAGERWELDYR 524
Query: 417 TLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + V + P + NP V+ LY E+L +P SEK+ + +HT Y
Sbjct: 525 EVRGSAIYEVDRSMPLRKSHENPAVQQLYREFLGKPLSEKSHELLHTHY 573
>gi|365174572|ref|ZP_09362014.1| hydrogenase, Fe-only [Synergistes sp. 3_1_syn1]
gi|363614589|gb|EHL66076.1| hydrogenase, Fe-only [Synergistes sp. 3_1_syn1]
Length = 565
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 193/413 (46%), Gaps = 44/413 (10%)
Query: 52 VKISLKDCLACSGCITSAET--VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFG 109
+ IS C+ C C T +++ S + + K V + ++P R +L + G
Sbjct: 184 IPISESVCVGCGQCAAVCPTGAIVIRNDSAKVWKALDEKETRVSVQIAPAVRVALGKELG 243
Query: 110 ISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 168
I + K+ L+ +G +FDTS DLT++E +EF+AR + + +
Sbjct: 244 IGDGENAMGKIVAALRRMGFNEVFDTSTGADLTVLEESSEFLARLDEGEH--------EM 295
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 228
P+ +S CP W+ YAEK ++ +S+ +SP Q A IK H P + HV V
Sbjct: 296 PLFTSCCPAWVKYAEKN-DPDVVSNLSTCRSPMQMFAAVIKEH----HKHSPRKQIHVAV 350
Query: 229 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288
MPC KK EAARE+F + P+VD VLTT E++ +I+ + F LE
Sbjct: 351 MPCTAKKAEAAREEFRTEAG-------------PDVDFVLTTQEIIQMIKESGLVFSELE 397
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 348
+D + G ++GV +GG E V R ++ + FK IR +D +
Sbjct: 398 PEAVDMPFGTMSGAGVIFGV---TGGVTEAVLRRIISDKSAAALQA-IAFKGIRGADGVK 453
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKP 407
A G LK A+ G N ++++++ + Y FVEVMACP GC+ G GQ K
Sbjct: 454 EAAVKYGDRELKIAVVSGLGNAHELIKRIRNGE-HYDFVEVMACPGGCVCGAGQPFVLKE 512
Query: 408 GQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 458
G++ + + +Y + M + +NPL+ +LY L+ G HVH
Sbjct: 513 GKASRG-----KGLYSADKMSSIKRSEENPLMMALYSGLLK--GRVHDLLHVH 558
>gi|154495355|ref|ZP_02034360.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC
43184]
gi|154085279|gb|EDN84324.1| hydrogenase, Fe-only [Parabacteroides merdae ATCC 43184]
Length = 601
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 203/414 (49%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I+ C C C++ L ++ + + + + K VI +P R +L FG
Sbjct: 195 IAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPDKIVIAQTAPAVRTALGRDFGYE 254
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ + L+ LG +FDT + DLT++E E + R + + D E +P+
Sbjct: 255 PGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTELLQRIGKYLKGDQE---VKMPL 311
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CPGW+ + E+ +L +S+ KSPQQ GA K + +KLG I V++MP
Sbjct: 312 MTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKRIVVVSIMP 370
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA+R +F + P+VD + T E+ LI+ +NF L +S
Sbjct: 371 CLAKKYEASRPEFAVDGN-------------PDVDISIYTRELARLIRYANINFAELPDS 417
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ L G ++ G++GG E R A + L+ K ++F+ +R + R
Sbjct: 418 DFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LYTKKTLPKIDFEELRGLEGIRSA 473
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++ +G T +K + +G N + +V +VK Y +EVMACP GC+ GGGQ P
Sbjct: 474 TIDFDG-TPIKIGIAHGLGNARRLVEEVKNGMSPYHAIEVMACPGGCIGGGGQ--PFHRG 530
Query: 410 SPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L K +Y E+ L +NP +++LY ++L +P +A K +HT Y
Sbjct: 531 RMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYADYLGEPCGPRAHKLLHTHY 584
>gi|423722284|ref|ZP_17696460.1| hydrogenase, Fe-only [Parabacteroides merdae CL09T00C40]
gi|409242425|gb|EKN35187.1| hydrogenase, Fe-only [Parabacteroides merdae CL09T00C40]
Length = 596
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 203/414 (49%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I+ C C C++ L ++ + + + + K VI +P R +L FG
Sbjct: 190 IAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPDKIVIAQTAPAVRTALGRDFGYE 249
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ + L+ LG +FDT + DLT++E E + R + + D E +P+
Sbjct: 250 PGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTELLQRIGKYLKGDQE---VKMPL 306
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CPGW+ + E+ +L +S+ KSPQQ GA K + +KLG I V++MP
Sbjct: 307 MTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKRIVVVSIMP 365
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA+R +F + P+VD + T E+ LI+ +NF L +S
Sbjct: 366 CLAKKYEASRPEFAVDGN-------------PDVDISIYTRELARLIRYANINFAELPDS 412
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ L G ++ G++GG E R A + L+ K ++F+ +R + R
Sbjct: 413 DFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LYTKKTLPKIDFEELRGLEGIRSA 468
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++ +G T +K + +G N + +V +VK Y +EVMACP GC+ GGGQ P
Sbjct: 469 TIDFDG-TPIKIGIAHGLGNARRLVEEVKNGMSPYHAIEVMACPGGCIGGGGQ--PFHRG 525
Query: 410 SPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L K +Y E+ L +NP +++LY ++L +P +A K +HT Y
Sbjct: 526 RMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYADYLGEPCGPRAHKLLHTHY 579
>gi|423345428|ref|ZP_17323117.1| hydrogenase, Fe-only [Parabacteroides merdae CL03T12C32]
gi|409223214|gb|EKN16151.1| hydrogenase, Fe-only [Parabacteroides merdae CL03T12C32]
Length = 596
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 203/414 (49%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I+ C C C++ L ++ + + + + K VI +P R +L FG
Sbjct: 190 IAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPDKIVIAQTAPAVRTALGRDFGYE 249
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ + L+ LG +FDT + DLT++E E + R + + D E +P+
Sbjct: 250 PGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTELLQRIGKYLKGDQE---VKMPL 306
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CPGW+ + E+ +L +S+ KSPQQ GA K + +KLG I V++MP
Sbjct: 307 MTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKRIVVVSIMP 365
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA+R +F + P+VD + T E+ LI+ +NF L +S
Sbjct: 366 CLAKKYEASRPEFAVDGN-------------PDVDISIYTRELARLIRYANINFAELPDS 412
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ L G ++ G++GG E R A + L+ K ++F+ +R + R
Sbjct: 413 DFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LYTKKTLPKIDFEELRGLEGIRSA 468
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++ +G T +K + +G N + +V +VK Y +EVMACP GC+ GGGQ P
Sbjct: 469 TIDFDG-TPIKIGIAHGLGNARRLVEEVKNGMSPYHAIEVMACPGGCIGGGGQ--PFHRG 525
Query: 410 SPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L K +Y E+ L +NP +++LY ++L +P +A K +HT Y
Sbjct: 526 RMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYADYLGEPCGPRAHKLLHTHY 579
>gi|423295633|ref|ZP_17273760.1| hydrogenase, Fe-only [Bacteroides ovatus CL03T12C18]
gi|392672342|gb|EIY65811.1| hydrogenase, Fe-only [Bacteroides ovatus CL03T12C18]
Length = 588
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGETLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|75499829|sp|Q46508.1|HNDD_DESFR RecName: Full=NADP-reducing hydrogenase subunit HndC; AltName:
Full=Hydrogen dehydrogenase (NADP(+))
gi|466366|gb|AAA87057.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
fructosovorans]
Length = 585
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 209/420 (49%), Gaps = 31/420 (7%)
Query: 49 AEPVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A +++L D C C C+ T ++E + + E + + N K VI+ +P RA+L
Sbjct: 184 APAFEMNLADTVCTNCGQCVAVCPTGALVEHEYIWEVVEALANPDKVVIVQTAPAVRAAL 243
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E G++P V K+ L+ LG +FDT + DLT++E +EF+ R + D
Sbjct: 244 GEDLGVAPGTSVTGKMAAALRRLGFDHVFDTDFAADLTIMEEGSEFLDRLGKHLAGD--- 300
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
+N LP+L+S CPGW+ + E Q +L S+ KSPQQ GA K + LG +++
Sbjct: 301 TNVKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFGAIAKTYYADLLGIPREKL 359
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK E AR +F + P+VD V+TT E+ L++ ++
Sbjct: 360 VVVSVMPCLAKKYECARPEFSVNGN-------------PDVDIVITTRELAKLVKRMNID 406
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F L + D L ++GV +GG E R A + G+ ++ ++F+ +R
Sbjct: 407 FAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYELATGETLK-KVDFEDVRG 462
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
D + A G L + +G N + +++ + + +EVMACP GC+ GGGQ
Sbjct: 463 MDGVKKAKVKVGDNELVIGVAHGLGNARELLKPCGAGE-TFHAIEVMACPGGCIGGGGQ- 520
Query: 404 KPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + L K + +Y E+ L +NP + LY+++L +P SE++ + +HT Y
Sbjct: 521 -PYHHGDVELLKKRTQVLYAEDAGKPLRKSHENPYIIELYEKFLGKPLSERSHQLLHTHY 579
>gi|392963546|ref|ZP_10328972.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
gi|392451370|gb|EIW28364.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
Length = 513
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 216/433 (49%), Gaps = 40/433 (9%)
Query: 51 PVK--ISLKDCLACS-GCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEH 107
P+K I+ +C C+ C TS+ + QS+ L + N ++I +P +R SL E
Sbjct: 103 PIKKDITCVNCGQCALWCPTSSIREREDLQSVLRVLEDPNL--HIVIQTAPATRVSLGEE 160
Query: 108 FGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNS 166
FG+ + + + LK LG ++FDT+ S D+T++E E + R + +
Sbjct: 161 FGLPTGSIVEGQQVAALKLLGFDAVFDTNFSADVTIMEEATELLKRLDK---------GN 211
Query: 167 SLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHV 226
+LP +S CPGW+ + E +LP++SSVKSPQQ +G K + +++G P+ I V
Sbjct: 212 ALPQFTSCCPGWVKFCEYYYPD-LLPHLSSVKSPQQILGVLAKTYYSERVGIAPENIVSV 270
Query: 227 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEG-LEIPEVDSVLTTGEVLDLIQLKAVNFE 285
VMPC KK E R + R G +I +VD +LTT E+ L++L+ ++
Sbjct: 271 AVMPCTAKKFECQRPEM-------NAAGRKAGNPQIRDVDFILTTRELARLMKLRKIDLS 323
Query: 286 ALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI-----EGHLEFKT 340
LE + D ++ G ++G G V A ++L+ V E L+F
Sbjct: 324 GLESAAYDHLMGESSGAGVIFGATGG-------VMEAAVRSLYFLVSKQRPPEQLLKFDA 376
Query: 341 IRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNG 399
+R +E + + GK LK A+C+G +N + I+ KV+ + F+E M C GC+ G
Sbjct: 377 VRGLGGVKEAEVMIPGKGSLKVAVCHGLKNARMILEKVRGDNSPWSFIEFMGCVGGCIGG 436
Query: 400 GGQIKPKPGQSPKELIKTLETIY-LENVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKH 456
GGQ + + + + +Y L++ + F+N V++LY E+L PGS+ A+
Sbjct: 437 GGQPRTSLASADEVRQARIAGLYSLDDRIYRKRASFENQKVQTLYKEYLGNPGSDLAETL 496
Query: 457 VHTEYHPVVKSIT 469
+HT Y K +T
Sbjct: 497 LHTHYVDRAKDVT 509
>gi|393784069|ref|ZP_10372236.1| hydrogenase, Fe-only [Bacteroides salyersiae CL02T12C01]
gi|392666876|gb|EIY60388.1| hydrogenase, Fe-only [Bacteroides salyersiae CL02T12C01]
Length = 588
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 202/415 (48%), Gaps = 30/415 (7%)
Query: 53 KISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
K+S +C C C+ + E+ + L ++ N K VI+ +P R +L E FG+
Sbjct: 192 KMSESECTYCGQCVAVCPVGALTERDHTNRLLEDLDNPDKVVIVQTAPAVRVALGEEFGM 251
Query: 111 -SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ QV K+ L+ LG +FDT + DLT++E E + R + D N LP
Sbjct: 252 PAGTQVTGKMVYALRELGFNYVFDTDFAADLTIMEEGTEVLERLGRFLNGD---KNVCLP 308
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+L+S CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++M
Sbjct: 309 ILTSCCPAWVNFFEHHFPD-LLDIPSTARSPQQMFGSIAKTYWAEKMGIPREKLVVVSIM 367
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E RE+F + P+VD ++T E+ LI+ + F L +
Sbjct: 368 PCLAKKYECDREEFKVNGN-------------PDVDYSISTRELATLIKRANIGFHLLPD 414
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
S D + G ++G ++GG E R + G V++ ++ F+ +R + R
Sbjct: 415 SEFDHPMGESTGAGVIFG---TTGGVMEAALRSVYEIYTGNVLK-NVNFENVRGLEGVRR 470
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ + G L K + +G N + ++ ++ +Y +E+MACP GC+ GGGQ P
Sbjct: 471 ATINLNGFEL-KVGIAHGLGNARRLLEDIRNGHNEYHAIEIMACPGGCIGGGGQ--PLHH 527
Query: 409 QSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L + +Y E+ + +NP ++ LY+E+L +P SEKA +HT Y
Sbjct: 528 GRADILYARAKALYQEDAQKPIRKSHENPYIQKLYEEYLGKPLSEKAHMLLHTHY 582
>gi|402832996|ref|ZP_10881619.1| [FeFe] hydrogenase, group A [Selenomonas sp. CM52]
gi|402281739|gb|EJU30365.1| [FeFe] hydrogenase, group A [Selenomonas sp. CM52]
Length = 586
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 210/430 (48%), Gaps = 38/430 (8%)
Query: 37 DKPQVSTSSKQQAEPVKISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVII 94
DK V+T+ E DC+ C C + + EK L + + K VI+
Sbjct: 178 DKITVTTAYDSPLEAT-----DCILCGQCSLVCPTGAITEKDDTQRVLDALQDPKKHVIV 232
Query: 95 SLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 153
++P R SL + F + P + ++ LK LG +FDT+ DLT++E +EFI R
Sbjct: 233 QVAPAVRVSLGDEFHLPPGAIVTGQMVAALKRLGFDRVFDTNFGADLTIMEEGHEFIHRL 292
Query: 154 KQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHIC 213
+ +LPM++S PGW+ Y EK S +LP++S+ KSP Q GA K +
Sbjct: 293 EHG---------GTLPMMTSCSPGWVNYVEKHY-SDLLPHLSTAKSPMQIFGAVAKTYYP 342
Query: 214 QKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEV 273
++ G ++I V+VMPC KK EAAR + + ++D VD V+TT E+
Sbjct: 343 KQSGIPVEDIVTVSVMPCTAKKFEAARPEM------GRDGHQD-------VDIVITTREL 389
Query: 274 LDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
LI + F L E D L G ++G ++GG E R + GK +
Sbjct: 390 AKLIHYIGITFHDLPEEDFDSPLGTCSGAGAIFG---TTGGVMEAALRTVYEKATGKTLP 446
Query: 334 GHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392
++F +R D +E +++ G+ ++ A+ + +N ++I+ ++K K Y F+EVMAC
Sbjct: 447 S-IDFLAVRGMDGIKEATVDL-GERKVRVAVAHTLKNAKHIMDELKAGKSPYDFIEVMAC 504
Query: 393 PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEK 452
P GC GGGQ E +K L I +N+ + +NP V +Y E+L P K
Sbjct: 505 PGGCQGGGGQPLNTTNARRAERMKALYEID-KNLPVRKSHENPEVVHIYKEFLGAPLEGK 563
Query: 453 AKKHVHTEYH 462
A + +HT +H
Sbjct: 564 AHELLHTHFH 573
>gi|332799825|ref|YP_004461324.1| hydrogenase, Fe-only [Tepidanaerobacter acetatoxydans Re1]
gi|438003089|ref|YP_007272832.1| Periplasmic [Fe] hydrogenase large subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|332697560|gb|AEE92017.1| hydrogenase, Fe-only [Tepidanaerobacter acetatoxydans Re1]
gi|432179883|emb|CCP26856.1| Periplasmic [Fe] hydrogenase large subunit [Tepidanaerobacter
acetatoxydans Re1]
Length = 584
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 141/473 (29%), Positives = 229/473 (48%), Gaps = 48/473 (10%)
Query: 3 EKFSPTLRIGDLSDFIAPSQNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKD--CL 60
+ FSP++ + D S I + CV + K P + A +SL + C+
Sbjct: 135 DDFSPSI-VRDTSKCIL-CRRCVSTCHKVQGVGVISPNYRGFNTVIAPVYDMSLSEVSCV 192
Query: 61 ACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFK 117
C CI + L EK D+ + + K VI+ +P R SL E FG V K
Sbjct: 193 NCGQCIMACPVGALKEKDDTDKVWKALADPEKYVIVQTAPAIRVSLGEEFGGELGTIVTK 252
Query: 118 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 177
KL L+ LG +FDT S DLT++E +EF+ R + + LP+++S PG
Sbjct: 253 KLPAALRRLGFDKVFDTDFSADLTILEEGSEFLDRLQ---------NGGKLPLITSCSPG 303
Query: 178 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 237
WI + E + L +S+ KSPQQ GA +K + +K+G P +I+ V++MPC KK E
Sbjct: 304 WIKFCEHYYPEF-LDNLSTCKSPQQMFGALVKTYYAEKMGIDPSKIFSVSIMPCTAKKYE 362
Query: 238 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 297
R + Y+D VD LTT E+ +++ +N L + D+ L
Sbjct: 363 CKRPEMF------SSGYQD-------VDVALTTRELSRMLKEAGINPNKLPDEEFDEPLG 409
Query: 298 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGK 356
G ++ G++GG E R + + K ++ +++F +R + +E +++EG
Sbjct: 410 ISTGAGAIF---GATGGVMEAALRTVYEIVTKKELK-NIDFTEVRGVEGVKEATIDIEG- 464
Query: 357 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 416
+ A+ +G N + ++ +VK + +Y F+E+MACP GC+ GGGQ P S E +
Sbjct: 465 IKVNIAVAHGLSNARAVLDRVKNGEANYHFIEIMACPGGCVGGGGQ----PILSADERWE 520
Query: 417 T------LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ IY N+ L +NP V++LY E+L +P EK+ + +HT Y
Sbjct: 521 ADYREERAKAIYEVDRNMPLRKSHENPAVKALYKEFLGEPLGEKSHELLHTHY 573
>gi|170289108|ref|YP_001739346.1| hydrogenase large subunit [Thermotoga sp. RQ2]
gi|170176611|gb|ACB09663.1| hydrogenase large subunit domain protein [Thermotoga sp. RQ2]
Length = 645
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 202/414 (48%), Gaps = 56/414 (13%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
+C+ C C+ T L + +D+ + + K VI ++P RA++ E FGI + +
Sbjct: 185 ECVLCGQCVAYCPTGALSIRNDIDKLIEALESDKIVIGMIAPAVRAAIQEEFGIDEDVAM 244
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+KL +FLK++G +FD S DL E +EF R K+ + LP +S C
Sbjct: 245 AEKLVSFLKTIGFDRVFDVSFGADLVAYEEAHEFYERLKKGER---------LPQFTSCC 295
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE Y L +SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK
Sbjct: 296 PAWVKHAEHTYPQY-LQNLSSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKK 354
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ +G+ VD VLTT E+ LI++ ++ +E P D+
Sbjct: 355 FEAEREEH-------------KGI----VDIVLTTRELAQLIKMSRIDINRIEPQPFDRP 397
Query: 296 LTNVDDEGHLYGVAGSSG---GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
YGV+ +G G A VF L ++ ++ K+ + R +
Sbjct: 398 ----------YGVSSQAGLGFGKAGGVFSCVLSVLNEEIGIEKVDVKSPEDG-IRVAEVT 446
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++ T K A+ YG ++ + + K D + +EVMAC GC+ GGGQ P + +
Sbjct: 447 LKDGTSFKGAVIYGLGKVKKFLEERK----DVEIIEVMACNYGCVGGGGQPYPNDSRIRE 502
Query: 413 ELIKTL-ETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH--VHTEYHP 463
K L +T+ +++++ P +N + LY+E L+ ++ +H +HT Y P
Sbjct: 503 HRAKVLRDTMGIKSLL--TPVENLFLMKLYEEDLK----DEHTRHEILHTTYRP 550
>gi|312898587|ref|ZP_07757977.1| putative ferredoxin hydrogenase [Megasphaera micronuciformis F0359]
gi|310620506|gb|EFQ04076.1| putative ferredoxin hydrogenase [Megasphaera micronuciformis F0359]
Length = 485
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 201/410 (49%), Gaps = 28/410 (6%)
Query: 59 CLACSGCITSAE-TVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C+ C C + M+E + + I + K V+ +P R ++AE FG
Sbjct: 65 CVHCGQCANACPFGAMMEVDDTNLVKAAIADPDKVVVFQTAPAVRVAIAEEFGAEAGTFA 124
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+ K+ + L++LG +FDT+ D+T++E +E + R N ++P +S C
Sbjct: 125 QGKMISALRALGGDYVFDTNFGADMTIMEETSELVRRITTG--------NFAMPQFTSCC 176
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE YI P++SS KSP T K +K G P ++ V V PC KK
Sbjct: 177 PAWVEFAETFYAEYI-PHLSSAKSPILMQNTTEKIWFAEKAGIDPKKMVTVCVTPCTAKK 235
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R+ +L++ E + +GL+ + D +TT E+ ++ + ++F L++ D
Sbjct: 236 AEIKRK----ELNAAAEYWHIDGLK--DSDICITTRELARWLKAENIDFNTLDDGIFDSH 289
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTIRNSD-FREVALEV 353
L G ++G S+GG E+ R A GK + ++ ++ +R D +E ++
Sbjct: 290 LGEASGGGIIFG---STGGVMESALRSAYYFYTGKPMPAEYIPYEPVRGLDGVKEATIDF 346
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKC--DYQFVEVMACPSGCLNGGGQIKPKPGQSP 411
G +L A+ G N + + K+ DY F+E MAC GC+NGGGQ K K
Sbjct: 347 SGISL-HVAVVSGLGNARRFLDKIMADGTFKDYTFIEFMACQGGCINGGGQPKVKMPLVQ 405
Query: 412 KELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
K + ++Y + V + ++NP ++ LY ++ QP SE+++K++HT
Sbjct: 406 KTNQARMNSLYKRDSEVSIKAAWENPEIQELYSDFYGQPLSERSEKYIHT 455
>gi|358062457|ref|ZP_09149102.1| hypothetical protein HMPREF9473_01164, partial [Clostridium
hathewayi WAL-18680]
gi|356699359|gb|EHI60874.1| hypothetical protein HMPREF9473_01164, partial [Clostridium
hathewayi WAL-18680]
Length = 519
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 198/421 (47%), Gaps = 42/421 (9%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQ 114
DC C C T L E L + + K VI+ ++P RA+L E FG+
Sbjct: 114 DCAMCGQCTVVCPTGALQETDGLTPVWKALADPAKRVIVQVAPAVRAALGEEFGLPCGTP 173
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ + L LG +FDT + DLT++E E + R + + + LPM++S
Sbjct: 174 VTGKMASALHELGFDDVFDTLFAADLTIMEEGTELLGRLDAALKG----GKAVLPMITSC 229
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI + E Q L ++SS KSP +GA +K + +K+ P +I+ V+VMPC K
Sbjct: 230 SPGWIKHVEHQFPEQ-LDHLSSCKSPHTMMGAVLKSYYAEKIDVSPKDIFVVSVMPCTAK 288
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R + Q++ P+VD+VLTT E+ +I+ ++F L E D
Sbjct: 289 KYEIQRPE--MQVNGN-----------PDVDAVLTTRELARMIKSAGIDFVNLPEGQFDA 335
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI--EGHLEFKTIRNSDFREVALE 352
L ++GV +GG E R + + G+ + EG + + ++
Sbjct: 336 PLGFSTGAADIFGV---TGGVMEAALRTVYELVTGEELPFEGLHVTPIVGLEQIKTASIT 392
Query: 353 VEGKTLLKF----------ALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
+E KTL F A+ G + ++++++ Y F+EVM CP GC++GGGQ
Sbjct: 393 IE-KTLPAFEHLKGVTVNVAVTSGLEGASILMKEIENGTSPYHFIEVMGCPGGCVSGGGQ 451
Query: 403 IKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+ + K + +Y E+ L +NP ++ LY E+L +P +A + +HT
Sbjct: 452 PRTTEENFRQ---KRSQALYSEDERKTLRKSHENPDLQQLYQEYLGEPNGHRAHELLHTH 508
Query: 461 Y 461
Y
Sbjct: 509 Y 509
>gi|378821841|ref|ZP_09844694.1| putative ferredoxin hydrogenase HydA1 [Sutterella parvirubra YIT
11816]
gi|378599337|gb|EHY32372.1| putative ferredoxin hydrogenase HydA1 [Sutterella parvirubra YIT
11816]
Length = 633
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 210/435 (48%), Gaps = 38/435 (8%)
Query: 41 VSTSSKQQAEPVKISLKD---CLACSGCITSAETVMLEKQSLDEFLSNINKGKAV--IIS 95
V TS+ PV + + C+AC C T L ++ + L + + AV ++
Sbjct: 201 VGTSAAIGFGPVGMKWAESSRCVACGQCTLVCPTGALSEKDQGDVLLDWIEDPAVTTVVQ 260
Query: 96 LSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
+P R L E FG+ P V ++T LK+LGV + DT S D+T++E E +A+ K
Sbjct: 261 TAPAVRVQLGEAFGLPPGTNVEGRITAALKALGVDFVMDTRWSADVTIMEEGTEVLAKLK 320
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+E+ + +S CPGW+ Y E + P +SS +SPQ GA K ++ Q
Sbjct: 321 ADREAGRRGT-----YFTSCCPGWVNYVELS-APELTPNLSSTRSPQAIFGALSKTYLPQ 374
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
K G I + +MPC KK EAAR V R+ G++ + D VLTT E
Sbjct: 375 KKGLDAKAIRTIAIMPCTAKKEEAARPTLV----------REAGVQ--DTDLVLTTREFA 422
Query: 275 DLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
+++ ++ + E P D ++ G L+G ++GG E R
Sbjct: 423 AVLRRAGIDLAQMPEVPYDSPFMSASSGAGALFG---ATGGVMEAAVRTMRAVTGVDDKT 479
Query: 334 GHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392
F+ +R D +E +E+ G +++ A+ +G N++ +V VK + + FVEVMAC
Sbjct: 480 WRPAFEAVRGMDGIKEAEVELPGVGVIRIAVVHGLANVKTVVEAVKRGESRWDFVEVMAC 539
Query: 393 PSGCLNGGGQIKPKPGQSPKELIKT-LETIYLENVMLADPFK----NPLVRSLYDEWLEQ 447
P GC+ GGG + + ++P+ + + L+ I+ + P + NP VR LY+++L +
Sbjct: 540 PGGCVGGGGAGRGQ--RTPRAALPSRLQGIW--KIDAEAPIRASHENPDVRRLYEDFLGE 595
Query: 448 PGSEKAKKHVHTEYH 462
PGS A +H EY
Sbjct: 596 PGSHLAHDLLHCEYR 610
>gi|331092597|ref|ZP_08341416.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400608|gb|EGG80222.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 580
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 205/419 (48%), Gaps = 37/419 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT L E+ D+ I +K K ++ ++P R + E G+
Sbjct: 182 KIEEADCSLCGQCITHCPVGALRERDDTDKAWEAIADKDKITVVQVAPAVRTAWGESLGL 241
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
S + K+ L+ +G +FDT+ S DLT++E NEF+ R+ + + P
Sbjct: 242 SREEATIGKIVDSLRQMGFDYVFDTTFSADLTIMEEGNEFLERFLSGELK-------TRP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGWI + + Q +++P +S+ KSPQQ G +K + + +G P+ I V++M
Sbjct: 295 MFTSCCPGWIRFIKSQY-PHLVPQLSTAKSPQQMFGTVMKTYFAKSIGVNPENICTVSIM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E E + E Y +VD VLTT E+ +I+ + L +
Sbjct: 354 PCVAKKGERNMELYY-------EEYAGH-----DVDIVLTTRELTRMIRSSHIKPSTLSD 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
D+++ + G ++ G++GG E R A L GK + F +R+ F +
Sbjct: 402 VECDRLMQDGSGAGVIF---GATGGVMEAALRSAYYLLMGKNPDAD-AFSVVRSEKFNQG 457
Query: 350 ALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ E G ++ A+ G N + ++ ++ Y FVEVMACP GC+ GGGQ
Sbjct: 458 VISAEFSIGDAKIQTAVVSGLGNTRKLIDAIEHGDVHYDFVEVMACPGGCVGGGGQ---- 513
Query: 407 PGQSPKEL--IKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P +EL I+ YL+ N + +N V LY++++E+P S KA +HT+++
Sbjct: 514 PIHDGEELAHIRGQNLYYLDKNAKIRFSHENQDVLKLYEDFMEKPLSHKAHMLLHTDHN 572
>gi|121534125|ref|ZP_01665950.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
gi|121307228|gb|EAX48145.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
Length = 574
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 204/411 (49%), Gaps = 37/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C + T ++EK + + K V++ +P R +L E G+ +
Sbjct: 191 CTYCGQCASVCPTGAIVEKDDTAAVWQALSDPAKHVVVQTAPAVRVALGEALGMGTGSIV 250
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT + DLT++E +EF+ R + LPM++S
Sbjct: 251 TGKMVAALRRLGFDKVFDTDFTADLTIMEEGSEFLDRLAK---------GGKLPMITSCS 301
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ + E +L ++S+ KSPQQ GA K + +++G P +I V++MPC KK
Sbjct: 302 PGWVNFIELMYPD-LLDHLSTAKSPQQMFGALAKTYYAERVGIDPKDIVSVSIMPCTAKK 360
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA R + + Y+D VD VLTT E+ +I+ ++F L E D
Sbjct: 361 AEAVRPEM------RASGYQD-------VDYVLTTRELARMIREAGIDFAGLPEEEYDAP 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L G ++G ++GG E R A+ + GK +E ++F +R + +E + V
Sbjct: 408 LGISTGAGVIFG---ATGGVMEAALRTVAELVTGKELEC-IDFHNVRGLTGIKEAEVPV- 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G +K A+ + N + ++ +++ + DY F+E+MACP GC+ GGGQ P + ++
Sbjct: 463 GDMTVKVAVAHTLANARMLLDQIRRGEADYHFIEIMACPGGCIGGGGQPIPTCAEVRQQR 522
Query: 415 IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
IK +IY + +NP ++ LY+ WL P EK+ + +HT YHP
Sbjct: 523 IK---SIYECDSCSQFRKSHENPAIKELYETWLGTPLGEKSHRLLHTHYHP 570
>gi|345856533|ref|ZP_08809011.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344330375|gb|EGW41675.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 580
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 201/411 (48%), Gaps = 39/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T + E +D+ +N + V++ +P R +L E F + P +
Sbjct: 195 CTFCGQCLAVCPTGALTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFDLEPGTIV 254
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT + DLT++E E + R K LP+L+S C
Sbjct: 255 TGKMVAALRRLGFDRVFDTDFAADLTIMEEATELVHRIKH---------GGRLPLLTSCC 305
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP + +G K + + LG P I V+VMPC KK
Sbjct: 306 PAWVKFFEHQFPD-LLDIPSTCKSPHEMLGVLTKSYYAKTLGIDPKTITVVSVMPCVAKK 364
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + +G E +VD V+TT E+ +I+ +++F+ L++ D
Sbjct: 365 YEAARPELA------------QGAETADVDIVITTRELARMIREASIHFDHLKDQEFDHP 412
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++G ++GG E R A + L G+ +E +EF+ +R D +E + +
Sbjct: 413 LGESTGAAVIFG---ATGGVLEAALRTAYEVLTGETLE-KVEFEALRGMDGIKEAVIPIA 468
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ + A+ +G N + ++ K++ + +Y +E+MACP GC+ GGGQ P + + L
Sbjct: 469 GRDY-RIAVIHGLGNARTVLEKIQAGESNYDVIEIMACPGGCIGGGGQ--PYHHGNMEIL 525
Query: 415 IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IY E+ A P + N + LY ++L +P +KA + +HT Y
Sbjct: 526 KARASAIYRED--RAKPLRKSHENLAIIGLYKDFLGEPYGKKAHQLLHTSY 574
>gi|325261424|ref|ZP_08128162.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
gi|324032878|gb|EGB94155.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
Length = 593
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 190/393 (48%), Gaps = 48/393 (12%)
Query: 90 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
K V++ ++P RA+L E FG+ V K+ L +G +FDT S DLT++E E
Sbjct: 221 KRVVVQVAPAVRAALGEEFGLPCGTPVTGKIAAALGDIGFDDVFDTLFSADLTILEEGTE 280
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
+ R + ++ + LPM++S PGWI + E Q L ++S+ KSP +GA +
Sbjct: 281 LLGRLNAALTGEE----AVLPMITSCSPGWIKHVEHQF-PEALGHLSTCKSPHTMMGALV 335
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K +K G RP++++ V+VMPC KK E R + ++D I +VD+VL
Sbjct: 336 KTFYAEKTGTRPEDMFVVSVMPCTAKKYEIQRPE--MEVDG-----------IRDVDAVL 382
Query: 269 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 328
TT E+ +I+ ++F L + D + ++GV G V A +T++
Sbjct: 383 TTRELARMIRKSGIDFVKLPDEAFDAPMGLGTGAADIFGVTGG-------VMEAALRTVY 435
Query: 329 GKVIEGHLEFKTIRNSDF--------REVAL--------EVEGKTLLKFALCYGFQNLQN 372
V L F+ + + E+A+ ++G T +K A+ G
Sbjct: 436 EVVTGEELPFEKLHVTPIIGLEQVKTAEIAIVETLPEYAHLKGVT-VKIAVTSGLAGASK 494
Query: 373 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLAD 430
++++V Y F+EVM CP GC+NGGGQ P+ + +T + +Y E+ +L
Sbjct: 495 LMQEVADGTSPYHFIEVMGCPGGCINGGGQ--PRCSEEGYREKRT-QALYSEDERKVLRK 551
Query: 431 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+NP + LYDE+L P KA +HT Y P
Sbjct: 552 SHENPDLLKLYDEYLGDPNGHKAHHLLHTHYVP 584
>gi|352685609|ref|YP_004897594.1| NADH dehydrogenase I subunit G [Acidaminococcus intestini RyC-MR95]
gi|350280264|gb|AEQ23454.1| NADH dehydrogenase I subunit G [Acidaminococcus intestini RyC-MR95]
Length = 580
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 202/409 (49%), Gaps = 34/409 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQV 115
DC C CIT T L E+ D+ S + + + I+ ++P R +L E +G+SP +
Sbjct: 190 DCTLCGQCITHCPTAGLRERDDTDKVYSALANPELIPIVQIAPAVRTALCEAYGVSPQEA 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
KL L+ +G + ++DT DLT++E NEF+ ++K + P+ +S
Sbjct: 250 PMGKLAAALRRMGFRYVYDTCFGADLTIMEEANEFLEKFKNGK-------TKKFPLFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + + + + +S+ KSPQQ GA K + +KLG P++++ V++MPC K
Sbjct: 303 CPGWVRFLKGKFPE-LTDRLSTSKSPQQMFGAIAKTWLAKKLGTEPEKLFLVSIMPCLAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E L + + + + VD VLTT E + ++ + L+E PLD
Sbjct: 362 KAEC-------DLPTMQTQHGKD------VDCVLTTREFIRMLNADRIYPHLLKEEPLDD 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEV 353
+ G ++GV +GG E R A + GK + L F IR RE +
Sbjct: 409 PMGTHTGAGTIFGV---TGGVMEAALRTAYYEVTGKDPDPDL-FADIRTGPALRERTYTL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + A+ G N ++++ +K K Y FVEVMACP GC GGGQ P +
Sbjct: 465 GGADV-HCAVVSGLGNARHLLEAIKAGKVHYDFVEVMACPGGCSGGGGQ--PISIDDEER 521
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+++Y + + L +NP + +LY E+L P SEKA++ +HT+
Sbjct: 522 AEARGQSLYALDQKMALRLSHRNPQIEALYAEFLGSPLSEKAEELLHTD 570
>gi|392423711|ref|YP_006464705.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
gi|391353674|gb|AFM39373.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
Length = 580
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 205/418 (49%), Gaps = 39/418 (9%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI- 110
+S C C C+ T + E +D+ +N + V++ +P R +L E FG+
Sbjct: 190 LSQTACTFCGQCLAVCPTGALTEVDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFGLE 249
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
S V K+ L+ LG +FDT + DLT++E +E + R K LP+
Sbjct: 250 SGTVVTGKMVASLRRLGFDRVFDTDFAADLTIMEEASELVHRIKH---------GGRLPL 300
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E Q +L S+ KSP Q +G+ K + + LG P I V+VMP
Sbjct: 301 LTSCCPAWVKFFEHQFPD-LLDIPSTCKSPHQMLGSLTKSYYAKTLGIDPKSITVVSVMP 359
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EAAR + D+ + VD V+TT E+ +I+ +++F+ L++
Sbjct: 360 CVAKKYEAARPELAQSADTAD------------VDIVITTRELARMIREASIHFDHLKDQ 407
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D L ++G ++GG E R A + L G+ +E +EF+ +R + +E
Sbjct: 408 EFDYPLGESTGAAVIFG---TTGGVLEAALRTAYEMLTGETLE-KVEFEALRGMNGIKEA 463
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
+ + G + A+ +G N ++++ K++ + Y +E+MACP GC+ GGGQ P
Sbjct: 464 VIPIAGHDY-RIAVIHGLGNARSVLEKIRAGESTYDVIEIMACPGGCIGGGGQ--PYHHG 520
Query: 410 SPKELIKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ + L IY E+ A P + N + +LY ++L P E+A + +HT Y P
Sbjct: 521 NMEILKHRAAAIYRED--RAKPLRKSHENLAIVALYKDYLGDPYGERAHQLLHTTYTP 576
>gi|83590553|ref|YP_430562.1| Iron hydrogenase, small subunit [Moorella thermoacetica ATCC 39073]
gi|83573467|gb|ABC20019.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Moorella
thermoacetica ATCC 39073]
Length = 573
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 212/407 (52%), Gaps = 34/407 (8%)
Query: 59 CLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C+ C C + + EK E + + + K V++ +P +R S+ + FG++P +
Sbjct: 191 CVECGQCTLVCPVGALYEKDYTSEVWAALADPEKFVVVQTAPATRVSIGQEFGLAPGSIN 250
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ L+ LG +FDT S DLT++E +EFI R+ + + LP+++S
Sbjct: 251 TGQMVAALRRLGFDRVFDTDFSADLTIMEEGSEFIERFTK---------DGPLPLITSCS 301
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGWI + E ++P +S+ KSPQQ GA K + +K G P + V++MPC KK
Sbjct: 302 PGWIKFME-HFYPELIPNVSTCKSPQQMFGAVAKTYYARKAGVDPARMVVVSIMPCTAKK 360
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + RD G + +VD VLTT E+ +I+ ++F+ L E D
Sbjct: 361 FECQRPEM-----------RDSGYQ--DVDYVLTTRELARMIREAGIDFKNLPEEQYDDP 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L G ++ G++GG E R A + + G+ + L+F IR +E ++++
Sbjct: 408 LGESTGAGVIF---GATGGVMEAALRTAYELITGETLPA-LDFYDIRGLKGIKEATVDIK 463
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G T ++ A+ + + + ++ +VK + Y F+E+M CP GC+ GGGQ P + ++
Sbjct: 464 G-TKVRVAVAHSLGHARQLLERVKAGE-QYHFIEIMCCPGGCIGGGGQPIPTNTEIREQR 521
Query: 415 IKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IK + + +E + + +NP V++LY E+L +P SEK+ +HTEY
Sbjct: 522 IKGIYQVDME-MPIRKSHENPSVQALYREFLGKPLSEKSHHLLHTEY 567
>gi|148270497|ref|YP_001244957.1| hydrogenase large subunit [Thermotoga petrophila RKU-1]
gi|281412803|ref|YP_003346882.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
RKU-10]
gi|147736041|gb|ABQ47381.1| hydrogenase large subunit domain protein [Thermotoga petrophila
RKU-1]
gi|281373906|gb|ADA67468.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
RKU-10]
Length = 645
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 202/414 (48%), Gaps = 56/414 (13%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
+C+ C C+ T L + +D+ + + K VI ++P RA++ E FGI + +
Sbjct: 185 ECVLCGQCVAYCPTGALSIRNDIDKLIEALESDKIVIGMIAPAVRAAIQEEFGIDEDVAM 244
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+KL +FLK++G +FD S DL E +EF R K+ + LP +S C
Sbjct: 245 AEKLVSFLKTIGFDRVFDVSFGADLVAYEEAHEFYERLKKGER---------LPQFTSCC 295
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE Y L +SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK
Sbjct: 296 PAWVKHAEHTYPQY-LQNLSSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKK 354
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ +G+ VD VLTT E+ LI++ ++ +E P D+
Sbjct: 355 FEAEREEH-------------KGI----VDIVLTTRELAQLIKMSRIDINRIEPQPFDRP 397
Query: 296 LTNVDDEGHLYGVAGSSG---GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
YGV+ +G G A VF L ++ ++ K+ + R +
Sbjct: 398 ----------YGVSSQAGLGFGKAGGVFSCVLSVLNEEIGIEKVDVKSPEDG-IRVAEVT 446
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++ T K A+ YG ++ + + K D + +EVMAC GC+ GGGQ P + +
Sbjct: 447 LKDGTSFKGAVIYGLGKVKKFLEERK----DVEIIEVMACNYGCVGGGGQPYPNDSRIRE 502
Query: 413 ELIKTL-ETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH--VHTEYHP 463
K L +T+ +++++ P +N + LY+E L+ ++ +H +HT Y P
Sbjct: 503 HRAKVLRDTMGIKSLL--TPVENLFLMKLYEEDLK----DEHTRHEILHTTYRP 550
>gi|325662495|ref|ZP_08151098.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471191|gb|EGC74416.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 584
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 211/419 (50%), Gaps = 37/419 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT L E+ ++ S + +K K ++ ++P RA+ E G+
Sbjct: 185 KIEDADCSLCGQCITHCPVGALRERDDTEKVWSALADKKKVTVVQIAPAVRAAWGEALGM 244
Query: 111 SPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
+ K+ L+ +G +FDT+ S DLT++E EF+ R + + D P
Sbjct: 245 KREEATVGKIVDALRKIGFDYVFDTAFSADLTIMEEGAEFLERLQNGELKDR-------P 297
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGWI + + Q +++P +SS KSPQQ GA +K + + +G P+ I V++M
Sbjct: 298 MFTSCCPGWIRFIKSQY-PHLVPQLSSAKSPQQMFGAVMKTYFAKSIGVDPENICTVSIM 356
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E E F E Y +VD VLTT E++ +I+ + L +
Sbjct: 357 PCLAKKGERNMELFY-------EEYAGH-----DVDIVLTTRELVRMIRSAHIAPSTLVD 404
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
+P D ++ + G ++ G++GG E R A + GK + F +R+++
Sbjct: 405 APCDTLMQDGSGAGVIF---GATGGVMEAALRSAYFLVTGKNPDAD-AFSVVRSNNLNHG 460
Query: 350 ALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
A+ E G T+++ A+ G N + ++ ++ Y FVEVMACP GC+ GGGQ
Sbjct: 461 AVCAEIPIGDTVVRAAVVSGLGNARQLIEMIERGDVHYDFVEVMACPGGCVGGGGQ---- 516
Query: 407 PGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P +EL ++ + +Y +N + +N V LY++++ +P S KA +HT+++
Sbjct: 517 PIHDGQELALERGKNLYFLDKNANIRFSHENKDVLKLYEDFMGKPLSHKAHLLLHTDHN 575
>gi|260886835|ref|ZP_05898098.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185]
gi|330839361|ref|YP_004413941.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185]
gi|260863434|gb|EEX77934.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185]
gi|329747125|gb|AEC00482.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185]
Length = 586
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 211/430 (49%), Gaps = 38/430 (8%)
Query: 37 DKPQVSTSSKQQAEPVKISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNI-NKGKAVII 94
DK V+T+ E DC+ C C + + EK L + + K VI+
Sbjct: 178 DKITVTTAYDSPLEAT-----DCILCGQCSLVCPTGAITEKDDTQRVLDALQDPKKHVIV 232
Query: 95 SLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 153
++P R SL + F + P + ++ LK LG +FDT+ DLT++E +EFI R
Sbjct: 233 QVAPAVRVSLGDEFHLPPGAIVTGQMVAALKRLGFDRVFDTNFGADLTIMEEGHEFIHRL 292
Query: 154 KQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHIC 213
+ + +LPM++S PGW+ Y EK S +LP++S+ KSP Q GA K +
Sbjct: 293 E---------NGGTLPMMTSCSPGWVNYVEKHY-SDLLPHLSTAKSPMQIFGAVAKTYYP 342
Query: 214 QKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEV 273
++ G ++I V+VMPC KK EAAR + + ++D VD V+TT E+
Sbjct: 343 KQSGIPVEDIVTVSVMPCTAKKFEAARPEM------GRDGHQD-------VDIVITTREL 389
Query: 274 LDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 333
LI + F L E D L G ++G ++GG E R + GK +
Sbjct: 390 AKLIHYVGITFHDLPEEDFDSPLGTCSGAGAIFG---TTGGVMEAALRTVYEKATGKTLP 446
Query: 334 GHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392
++F +R D +E +++ G+ ++ A+ + +N ++I+ ++K K Y F+EVMAC
Sbjct: 447 S-IDFLAVRGMDGIKEATVDL-GERKVRVAVAHTLKNAKHIMDELKAGKSPYDFIEVMAC 504
Query: 393 PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEK 452
P GC GGGQ E +K L I +N+ + +NP V +Y E+L P K
Sbjct: 505 PGGCQGGGGQPLNTTNARRVERMKALYEID-KNLPVRKSHENPEVVHIYKEFLGAPLEGK 563
Query: 453 AKKHVHTEYH 462
A + +HT +H
Sbjct: 564 AHELLHTHFH 573
>gi|380694637|ref|ZP_09859496.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides faecis MAJ27]
Length = 588
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG+ P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGLPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLDGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECDRDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFTLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R + G+ ++ ++ F+ +R S R + +
Sbjct: 420 PMGESTGAGVIFG---TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLSGVRRATIHL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L K + +G N ++++ ++ + +Y +E+MACP GC+ GGGQ P +
Sbjct: 476 NGFEL-KVGIAHGLGNARHLLEDIRNGQNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDV 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP ++ LY+E+L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIQKLYEEYLGKPLGEKSEMLLHTHY 582
>gi|291533663|emb|CBL06776.1| Iron only hydrogenase large subunit, C-terminal domain [Megamonas
hypermegale ART12/1]
Length = 324
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 174/339 (51%), Gaps = 34/339 (10%)
Query: 126 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 185
+G +FDT+ DLT+ E NE I R K S +PM +S CPGW+ Y EK
Sbjct: 2 IGFDKVFDTNYGADLTITEEANELIERIK---------SGKKMPMATSCCPGWVNYMEKH 52
Query: 186 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 245
+L ++S+ KSP Q A K H ++ P I+ V +MPC KK E R +
Sbjct: 53 YPD-LLDHLSTTKSPMQIFSAITKTHYAKQENLDPKNIFTVAIMPCIAKKYEITRPEMAH 111
Query: 246 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 305
D + P+ D+VLTT E++ LI+ ++FE L ES D + +
Sbjct: 112 --DGR-----------PDTDAVLTTRELIKLIKYIGIDFENLPESEFDNPMGTATGAAAI 158
Query: 306 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 364
+G ++GG E R + L G+ ++ ++E+ +R D +E + + KT+ A+
Sbjct: 159 FG---ATGGVMEAALRTTYEWLTGEEMK-NVEYTPVRGFDGIKEAQINIGDKTI-NIAVA 213
Query: 365 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL- 423
+ N + ++ K++ +C Y F+EVMACP GCL GGGQ G + + K +E+IY
Sbjct: 214 HTLNNAKILMDKLRAGECKYDFIEVMACPGGCLGGGGQ---PIGTTMEVNKKRMESIYQI 270
Query: 424 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+N +NP ++ LY ++LE+PGSE A K +HT Y
Sbjct: 271 DKNTKYRKSHENPYLKQLYKDFLEKPGSEIAHKLLHTHY 309
>gi|392413421|ref|YP_006450028.1| hydrogenase, Fe-only [Desulfomonile tiedjei DSM 6799]
gi|390626557|gb|AFM27764.1| hydrogenase, Fe-only [Desulfomonile tiedjei DSM 6799]
Length = 416
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 183/386 (47%), Gaps = 32/386 (8%)
Query: 42 STSSKQQAEPVKISLKDCLACSGCITSA--ETVMLEKQSLDEFLSNINKGKAVIISL-SP 98
K A + C+ C C+ + + +DE ++ + K V++++ +P
Sbjct: 49 GAGGKDDAPHTVVHPAACMNCGQCLYHCPYQAIYEGVSFVDEVIAALKDPKRVVVAMPAP 108
Query: 99 QSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 157
R +AE FG P K+ L+ LG + I+D + DLT+ E EF+ R
Sbjct: 109 AIRYGIAECFGAKPGTYAGGKMFAALRQLGFRYIWDNEFTADLTIFEEGTEFVGRLTGLI 168
Query: 158 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 217
+ LP +S CP WI + E + P++S+ KSP +G K + +K
Sbjct: 169 KQ-------PLPQFTSCCPAWIKFMETYYPD-LFPHLSTAKSPIGMLGPLAKTYGAEKTH 220
Query: 218 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 277
P IY V++MPC KK E R + +YRD +D+ +TT E+ +I
Sbjct: 221 TSPANIYTVSIMPCVAKKYEGLRPELA------ASSYRD-------IDATITTRELAYMI 267
Query: 278 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 337
+ ++F +L + D +L G ++ +SGG E R+A + + K ++ ++
Sbjct: 268 KKAGIDFNSLPDQEADAVLGTSTGAGTIFA---ASGGVMEAALRYAYEVVTKKKLD-KVD 323
Query: 338 FKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 396
F +R +F+E ++V G T +K A+ +G N + + ++ +K Y F+EVM CP GC
Sbjct: 324 FTAVRGEKNFKEATIKV-GDTDVKVAVIWGLANAKPVCDAIRAKKSPYHFIEVMTCPGGC 382
Query: 397 LNGGGQIKPKPGQSPKELIKTLETIY 422
+NGGGQ P PG ++K L ++
Sbjct: 383 VNGGGQPLP-PGTLQSSIMKHLRMVF 407
>gi|164688084|ref|ZP_02212112.1| hypothetical protein CLOBAR_01729 [Clostridium bartlettii DSM
16795]
gi|164602497|gb|EDQ95962.1| hydrogenase, Fe-only [Clostridium bartlettii DSM 16795]
Length = 598
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 200/416 (48%), Gaps = 40/416 (9%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV 115
+C C CI T +LEK + DE + K K V++ ++P R ++E FG+ P +
Sbjct: 193 ECTFCGQCINVCPTGALLEKDNTDEAWGLLAQKEKPVMVQIAPAVRVGISEEFGLKPGTI 252
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
K+ LK+LG +FDT+ + DLT++E NEF+ R + + LP+++S
Sbjct: 253 STGKVVAALKALGFDYVFDTNFAADLTIMEEANEFVNRLTKGGD---------LPIMTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMPCYD 233
CP W+ + E Q + Y+S+ +SPQ +++ K L +PDE+ V++MPC
Sbjct: 304 CPAWVNFCESQYPD-LTKYLSTCRSPQSMFSPIARYYFADKVLDKKPDEVSVVSIMPCVA 362
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E RE+ Q+ I + D LT E+ +I+ ++ E LEE D
Sbjct: 363 KKYEVKREEL-----GQDG--------IIDTDLSLTVRELARMIKSAGIDLENLEEENFD 409
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSD-FREVAL 351
L ++GV +GG E R A + + + + +EFK +R + +E +
Sbjct: 410 SPLGYSTGAADIFGV---TGGVLEAALRTAYTDVTKEELPDDGIEFKAVRGFEGIKEATI 466
Query: 352 EVEG---KTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKP 407
+ G + +L + + + + K Y +E+MACP GC+NGGGQ P
Sbjct: 467 NIAGIDVNVVAASSLGCARKLMDELRADIAAGKTPKYHIIEIMACPGGCVNGGGQ--PFT 524
Query: 408 GQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+++ +Y+ +N + +N ++ LYDE+L + G A K++HT Y
Sbjct: 525 NGDYEKVKARGAGLYIIDKNKLQRKSHENEDIKKLYDEFLGERGGHNAHKYLHTHY 580
>gi|295087525|emb|CBK69048.1| hydrogenases, Fe-only [Bacteroides xylanisolvens XB1A]
Length = 599
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 208 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 267
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 268 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 324
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 325 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 383
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 384 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 430
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 431 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINL 486
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 487 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 543
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 544 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 593
>gi|402574701|ref|YP_006624044.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
gi|402255898|gb|AFQ46173.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
Length = 580
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 200/411 (48%), Gaps = 39/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T ++E +D+ +N + VI+ +P R +L E FG+ P +
Sbjct: 195 CTFCGQCVAVCPTGALMELDQVDKVWKALNDPTRYVIVETAPAVRVALGEGFGLEPGTIV 254
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ L+ LG +FDT D+T++E E I R + LP+L+S C
Sbjct: 255 TGRMVAALRRLGFDRVFDTEFGADVTIMEEATELIHRIEH---------GGRLPILTSCC 305
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP Q +G K + + G P +I V++MPC KK
Sbjct: 306 PAWVKFFEHQFPD-LLDIPSTCKSPHQMLGVLSKSYYAETYGIDPQKITVVSIMPCIAKK 364
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + Q+ P+VD V+TT E+ +I+ ++F+ L+E D
Sbjct: 365 YEAARPEL-----GQDPV-------TPDVDIVITTRELSRMIREAGIHFDHLKEEDFDHP 412
Query: 296 LTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
L G G A G++GG E R A + L GK +E ++EF+ +R D + A+
Sbjct: 413 L------GESTGAAVVFGTTGGVIEAALRTAYEWLTGKPLE-NVEFEPLRGMDGIKEAII 465
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G+ + A+ +G N + I+ K++ + Y +E+MACP GC+ GGGQ P +
Sbjct: 466 PIGERDFRIAVTHGLGNARTILEKIQSGESHYDAIEIMACPGGCIGGGGQ--PYHHGNLA 523
Query: 413 ELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L IY E+ L +NP V LY +++ +P EKA + +HT +
Sbjct: 524 ILEARANAIYQEDRSKPLRKSHENPAVLKLYRDYIGEPYGEKAHRLLHTSF 574
>gi|299146441|ref|ZP_07039509.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
3_1_23]
gi|298516932|gb|EFI40813.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
3_1_23]
Length = 588
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 644
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 210/429 (48%), Gaps = 47/429 (10%)
Query: 53 KISLKDCLACSGC--------ITSAETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRAS 103
+I C C C I++ + ML FL ++ K VI ++P R +
Sbjct: 246 EIDYNRCTHCGACVSACPVDAISAGDNTML-------FLRDLATPNKVVITQMAPAVRVA 298
Query: 104 LAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 162
+ E FG P + V KK+ L+ LGV +FDTS DLT++E E R ++ D+
Sbjct: 299 IGEAFGFEPGENVEKKIAAGLRKLGVDYVFDTSWGADLTIMEEAAELQERLERHLAGDE- 357
Query: 163 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222
+ LP+L+S CP WI + E+ G +L SS KSP + K ++ G DE
Sbjct: 358 --SVKLPILTSCCPSWIKFIEQNYGD-MLDVPSSAKSPMEMFAIVAKEIWAKEKGLSRDE 414
Query: 223 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282
+ V +MPC KK EA+R +F ++ +VD V+TT E++ + + +
Sbjct: 415 VTSVAIMPCIAKKYEASRAEFSVDMNY-------------DVDYVITTRELIKIFENSGI 461
Query: 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
N + +E+ +D ++ G ++G +GG E R A + + G+ + ++EF+ +R
Sbjct: 462 NLKEIEDEEIDTVMGEYTGAGIIFG---RTGGVIEAATRTALEKMTGERFD-NIEFEGLR 517
Query: 343 NSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
D FR LE G L+ + +G + ++ K++ + + +E+MAC GC+ GGG
Sbjct: 518 GWDGFRVCELEA-GDIKLRIGVAHGLREAAKMLDKIRSGEEFFHAIEIMACVGGCIGGGG 576
Query: 402 QIKPKPGQSPKELIKTLETIYLENV----MLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 457
Q K K G L K E L N+ L +NP V ++Y+++L+ P S KA + +
Sbjct: 577 QPKTK-GNKQAALQKRAEG--LNNIDRSKTLRRSNENPEVLAIYEKYLDHPLSNKAHELL 633
Query: 458 HTEYHPVVK 466
HT Y P VK
Sbjct: 634 HTVYFPRVK 642
>gi|159472741|ref|XP_001694503.1| iron hydrogenase [Chlamydomonas reinhardtii]
gi|18026272|gb|AAL23573.1| iron-hydrogenase HydA2 [Chlamydomonas reinhardtii]
gi|29165649|gb|AAM01186.2| Fe-only hydrogenase precursor [Chlamydomonas reinhardtii]
gi|158276727|gb|EDP02498.1| iron hydrogenase [Chlamydomonas reinhardtii]
Length = 505
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 212/449 (47%), Gaps = 66/449 (14%)
Query: 67 TSAETVMLEKQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQVF-KKLTTFLK 124
T+ + V K +L+E + G+ V+I+ ++P R ++AE FG++P V KL T L+
Sbjct: 64 TATDAVPHWKLALEELDKPKDGGRKVLIAQVAPAVRVAIAESFGLAPGAVSPGKLATGLR 123
Query: 125 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 184
+LG +FDT + DLT++E E + R K+ E+ S+ LPM +S CPGW+ EK
Sbjct: 124 ALGFDQVFDTLFAADLTIMEEGTELLHRLKEHLEAH-PHSDEPLPMFTSCCPGWVAMMEK 182
Query: 185 QLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE- 241
SY ++P++SS KSPQ +GA +K ++ +K G +I V+VMPC K+ EA RE
Sbjct: 183 ---SYPELIPFVSSCKSPQMMMGAMVKTYLSEKQGIPAKDIVMVSVMPCVRKQGEADREW 239
Query: 242 -----------DFVFQLDSQEETYRDEGLEIPEV-----DSVL-----------TTGEVL 274
D V +++ G+ +PE+ D L TTG V+
Sbjct: 240 FCVSEPGVRDVDHVITTAELGNIFKERGINLPELPDSDWDQPLGLGSGAGVLFGTTGGVM 299
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
+ A +E + + PL ++ N+ + L G+ +S A + F +++
Sbjct: 300 EAALRTA--YEIVTKEPLPRL--NLSEVRGLDGIKEAS-----VTLVPAPGSKFAELVAE 350
Query: 335 HLEFKTIRNSDFREVAL--------------------EVEGKTLLKFALCYGFQNLQNIV 374
L K + A + +G L+ A+ G N + ++
Sbjct: 351 RLAHKVEEAAAAEAAAAVEGAVKPPIAYDGGQGFSTDDGKGGLKLRVAVANGLGNAKKLI 410
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKN 434
K+ + Y FVE+MACP+GC+ GGGQ + Q ++ L + N L +N
Sbjct: 411 GKMVSGEAKYDFVEIMACPAGCVGGGGQPRSTDKQITQKRQAALYDLDERNT-LRRSHEN 469
Query: 435 PLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
V LY E+L +P S +A + +HT Y P
Sbjct: 470 EAVNQLYKEFLGEPLSHRAHELLHTHYVP 498
>gi|210610147|ref|ZP_03288284.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787]
gi|210152607|gb|EEA83613.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787]
Length = 590
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 203/414 (49%), Gaps = 39/414 (9%)
Query: 59 CLACSGCITSAETVMLEKQS----LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ 114
C C C+T L +++ + E LS+ NK V+ ++P R + E FG+ P +
Sbjct: 188 CSLCGQCVTHCPVGALRERNDTEKVWEALSDPNK--IVVTQVAPAVRTAWGEEFGLQPNE 245
Query: 115 V-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 173
+ LK +G +FDT S DLT++E EFI R+ + D PM +S
Sbjct: 246 ATVGMILDALKKMGADYVFDTCFSADLTIMEEATEFIQRFTSGELKDR-------PMFTS 298
Query: 174 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
CPGW+ +A+ Q +++ Y+SS KSPQQ G +K + QKLG P++I+ V++MPC
Sbjct: 299 CCPGWVRFAKSQF-PHMVKYVSSAKSPQQMFGTVMKTYFAQKLGVSPEQIFTVSIMPCLA 357
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E E F + + ++D VLTT E + +I+ ++ E L+ D
Sbjct: 358 KKGEQEMELFHGEYAGK------------DIDVVLTTREFVKMIRAAHISPETLKNRESD 405
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR------NSDFR 347
+ + G ++ G++GG E R A L G+ F+ +R N +
Sbjct: 406 RPMQEGTGAGVIF---GTTGGVMEAALRSAYFFLKGENAAADA-FQAVRAEGFNANHGVQ 461
Query: 348 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP 407
E +++ T ++ A+ G N + +++K++ + Y FVEVMACP GC+ GGGQ
Sbjct: 462 EAEFQIDDIT-VRTAVVSGLGNTRALMKKIERGEVHYDFVEVMACPGGCVGGGGQPIHDG 520
Query: 408 GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ E K L + + + NP ++ LY+E+ +P KA +HT++
Sbjct: 521 EERAFERGKRLYQLDA-DAKIRYSHDNPDIKRLYEEYFGEPNEHKAHMLLHTDH 573
>gi|293371347|ref|ZP_06617784.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f]
gi|336404793|ref|ZP_08585483.1| hypothetical protein HMPREF0127_02796 [Bacteroides sp. 1_1_30]
gi|336415948|ref|ZP_08596286.1| hypothetical protein HMPREF1017_03394 [Bacteroides ovatus
3_8_47FAA]
gi|292633707|gb|EFF52262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f]
gi|335939851|gb|EGN01723.1| hypothetical protein HMPREF1017_03394 [Bacteroides ovatus
3_8_47FAA]
gi|335941065|gb|EGN02926.1| hypothetical protein HMPREF0127_02796 [Bacteroides sp. 1_1_30]
Length = 588
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|160887580|ref|ZP_02068583.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483]
gi|156107991|gb|EDO09736.1| hydrogenase, Fe-only [Bacteroides ovatus ATCC 8483]
Length = 588
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNHLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|323702078|ref|ZP_08113746.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333923416|ref|YP_004496996.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532960|gb|EGB22831.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333748977|gb|AEF94084.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 593
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 207/413 (50%), Gaps = 44/413 (10%)
Query: 59 CLACS-GCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-F 116
C CS C T A T + + + L + NK V++ +P R ++AE FG+ P +
Sbjct: 197 CGQCSLVCPTGAITEVDDTGKVWRALDDPNK--HVVVQTAPAVRVAIAEEFGLEPGTIGT 254
Query: 117 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 176
KL L+ LG S+ DT + DLT++E EFI R + LPM++S P
Sbjct: 255 GKLVAALRRLGFDSVMDTDFTADLTIMEEGTEFIKRVTEG---------GVLPMITSCSP 305
Query: 177 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 236
GWI Y E +L ++S+ KSPQQ GA +K +K G P IY V++MPC KK
Sbjct: 306 GWIKYIEMYYPD-LLAHLSTCKSPQQMFGALVKTFYAEKKGIDPASIYSVSIMPCTAKKF 364
Query: 237 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 296
EA R++ +D G + +VD VLTT E+ +++ ++++ L E D
Sbjct: 365 EAQRDEL-----------KDSGFQ--DVDVVLTTRELGRMLREIGIDWDNLPEEQYD--- 408
Query: 297 TNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE 352
D G G A G++GG E R + + + + + +R +E L+
Sbjct: 409 ---DPMGISTGAAVIFGATGGVMEAAVRTVYEVITKETMP-DINLTPVRGMKGIKEATLK 464
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
V G +K A+ + N + ++ K++ +CDY F+E+M CP GC+ GGGQ P P
Sbjct: 465 V-GDLEVKVAVAHTLGNARKLLDKIRANECDYHFIEIMCCPGGCIGGGGQ--PIPTNLEV 521
Query: 413 ELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
L K + IY E + + +NP ++++Y+E+L QP EK+ K +HT Y P
Sbjct: 522 RL-KRIAGIYKADEELPIRKSHENPAIKAIYEEFLGQPLGEKSHKLLHTHYIP 573
>gi|383114977|ref|ZP_09935736.1| hydrogenase, Fe-only [Bacteroides sp. D2]
gi|313693311|gb|EFS30146.1| hydrogenase, Fe-only [Bacteroides sp. D2]
Length = 588
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V+ MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSTMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIFG---TTGGVMEAALRSVYEIYTGETLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L K + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFEL-KVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|262407421|ref|ZP_06083969.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
gi|294646920|ref|ZP_06724541.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a]
gi|294810789|ref|ZP_06769435.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC
1b]
gi|345512101|ref|ZP_08791640.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|229443453|gb|EEO49244.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|262354229|gb|EEZ03321.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
gi|292637865|gb|EFF56262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a]
gi|294441977|gb|EFG10798.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC
1b]
Length = 588
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLNIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|383790940|ref|YP_005475514.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
gi|383107474|gb|AFG37807.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
Length = 594
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 206/422 (48%), Gaps = 43/422 (10%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGI-SPLQV 115
C+ C C+ ++E +D ++ + V++ +P RA+L E FG+ + +V
Sbjct: 189 CVQCGQCVAVCPVGAIMETSHIDRVWDALDDPQLHVVVQTAPAIRAALGECFGLPAGTRV 248
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS-QESDDERSNSSLPMLSSA 174
K+ L+ L ++FDT + DLT++E E + R ++ DE LP+++S
Sbjct: 249 TGKMVRALRRLHFDAVFDTDFAADLTIMEEGTELLQRLTAVLRDGRDE----PLPVITSC 304
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
PGWI +AE+ +LP +SS KSPQQ GA K + + G P ++ +VMPC K
Sbjct: 305 SPGWINFAEQYF-PQLLPMVSSCKSPQQMFGALAKTYYAESRGIDPARVFVASVMPCTAK 363
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA R + Q Y P+VD+VLTT E+ +I + FE LE+ +D+
Sbjct: 364 KYEAMRPEM------QSSGY-------PDVDAVLTTRELAHMIHQAGITFEQLEDDHMDE 410
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE---GHLEFKTIRN-SDFREVA 350
L ++ G++GG E R + + GK + G LE +R ++
Sbjct: 411 PLGISTGAADIF---GATGGVMEAALRTVHELVTGKPLPGPGGRLELVPVRGLEGVKQAK 467
Query: 351 LEVEGKTL---------LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
L ++G L A+ +G N ++++++ FVE+M CP GC+ GGG
Sbjct: 468 LPIQGTVAEWGFLEGEELSVAVAHGLSNAARLLQEIQHGSISPHFVEIMCCPGGCIGGGG 527
Query: 402 QIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
Q P+P L + + +Y E+ L +NP V++LY E+L +PGS A + +HT
Sbjct: 528 Q--PRPTTDAVRLAR-MRALYDEDAAKPLRGSHQNPAVQALYREFLGEPGSAAAHRLLHT 584
Query: 460 EY 461
Y
Sbjct: 585 SY 586
>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 1198
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 212/431 (49%), Gaps = 45/431 (10%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV 115
+C+ C CI T + EK + L IN K V+ ++P R ++AE FG P +
Sbjct: 209 ECIQCGQCINRCPTGAITEKSEIRPVLDAINDPTKTVVFQMAPSIRVAVAEEFGFKPGEK 268
Query: 116 FKK--LTTFLKSLGVKS-IFDTSCSRDLTLIEACNEFIARYKQSQES----DDERSNSSL 168
K + T L+ LG + DT+ S DLT+IE +E I R ++ D+ L
Sbjct: 269 ILKNEIATALRKLGSNVFVLDTNFSADLTIIEEGHELIERLYRNVTGKKLLGDDHMPIEL 328
Query: 169 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG-FRPDEIYHVT 227
PML+S CPGWI + EK +L ++S+ KSPQ +GA IK + + + P +I V+
Sbjct: 329 PMLTSCCPGWIMFMEKNYPD-MLNHLSTCKSPQGMLGALIKGYWAKNIKKMDPKDIVSVS 387
Query: 228 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287
+MPC KK E R +E Y+D VD +LTT E+ +++ ++ +
Sbjct: 388 IMPCTAKKAEKERPQL-----RGDEGYKD-------VDYILTTRELAKMLKQSNIDLGKM 435
Query: 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSD- 345
E +P DK+++ ++GV +GG E R A + + G+ + +L + +R D
Sbjct: 436 EPTPFDKVMSEGTGAAVIFGV---TGGVMEAALRTAYEVITGREVPFKNLNIEAVRGMDG 492
Query: 346 FREVALEVEG---------KTLLKFALCYGFQNLQNIVRKVKMRK-----CDYQFVEVMA 391
RE +++E +K A+ +G N + ++ +K K + FVEVMA
Sbjct: 493 IREAGIKLENVLDKYKAFEGVTVKVAIAHGPNNARKVMDIIKRAKDSGKPAPWHFVEVMA 552
Query: 392 CPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPGS 450
CP GC+ GGGQ PKP +T T + ++ L NP ++++Y+ +L++P
Sbjct: 553 CPGGCIGGGGQ--PKPTNLEIRQARTKLTFKEDMDLPLRKSHDNPEIKAIYETYLKEPLG 610
Query: 451 EKAKKHVHTEY 461
+ ++HT Y
Sbjct: 611 HNSHHYLHTTY 621
>gi|326791478|ref|YP_004309299.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
gi|326542242|gb|ADZ84101.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
Length = 584
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 206/424 (48%), Gaps = 37/424 (8%)
Query: 49 AEPVKISLKD--CLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A ++ L D C C C+ T L EK+ + + + + GK V++ +P RA+L
Sbjct: 185 ATAFEVDLADSVCTHCGQCVAVCPTGALSEKEHIWNVVRQLADPGKVVVVQTAPAVRAAL 244
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E FG++P V K+ L+ LG +FDT + D T++E E + R + Q D
Sbjct: 245 GEEFGMAPGTLVTGKMVAALRKLGFNYVFDTDFAADATIMEEGAELVDRLTRFQNGD--- 301
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
LP+L+S CP W+ + E Q +L SS KSPQQ GA K + QK+ P +
Sbjct: 302 PTVKLPILTSCCPAWVNFFESQFPD-LLDIPSSAKSPQQMFGAIAKSYFAQKMNIDPKNM 360
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK EA+R +F EVD ++T E+ LI+ ++
Sbjct: 361 VVVSVMPCLAKKYEASRPEFN-----------------REVDISISTRELAHLIKKANID 403
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F L E D L ++ G++GG E R A + + G+ + G ++F+ +R
Sbjct: 404 FNNLPEEDFDHPLGESTGASVIF---GTTGGVIEAAVRTAYEVITGETL-GKVDFEELRG 459
Query: 344 SD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-MRKCDYQFVEVMACPSGCLNGGG 401
+ R +++V G L + +G N + ++ +++ +Y +E+MACP GC+ GGG
Sbjct: 460 FEGIRSASVKV-GDLDLNIGIAHGLGNARLLLEEIRGGNPNNYHAIEIMACPGGCIGGGG 518
Query: 402 QIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
Q P + + L + IY E N + +NP ++ +Y + +P S KA + +HT
Sbjct: 519 Q--PYHHGNSEILKQRQAAIYEEDRNKAIRKSHENPYIKEMYANYFGKPMSHKAHELLHT 576
Query: 460 EYHP 463
Y P
Sbjct: 577 HYEP 580
>gi|333997422|ref|YP_004530034.1| iron hydrogenase 1 [Treponema primitia ZAS-2]
gi|299483517|gb|ADJ19598.1| putative iron only hydrogenase large subunit C-terminal domain
[Treponema primitia ZAS-2]
gi|333741284|gb|AEF86774.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI)
[Treponema primitia ZAS-2]
gi|342308753|gb|AEL20849.1| HydA1 [Treponema primitia ZAS-2]
Length = 454
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 183/381 (48%), Gaps = 47/381 (12%)
Query: 93 IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
I+ +P R +AE FG+ PL K+ L+ LG K ++DT+ S DLT++E E +
Sbjct: 106 IVQAAPAVRVGIAEDFGL-PLGSLASGKMAAGLRRLGFKKVYDTNFSADLTIMEEGTELV 164
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R + LPM +S CPGW+ Y E + ++SS KSPQQ GA K
Sbjct: 165 KRVTE---------KGVLPMFTSCCPGWVRYMENNH-PELTKHLSSCKSPQQMAGAVFKT 214
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ + G + ++Y+V+VMPC K EAAR + ++D +D V+TT
Sbjct: 215 YGAKLDGVKGAKVYNVSVMPCTCKTFEAARAEM------NSSGWQD-------IDVVITT 261
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
E+ L++ K ++ L + D L G ++GV +GG E R + GK
Sbjct: 262 RELGYLLKYKGIDLATLPDEEFDMPLGEYTGAGAIFGV---TGGVMEAAIRTGYTLITGK 318
Query: 331 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 389
++ ++ +R SD FR ++ G LK + +N+ ++ +++ D FVEV
Sbjct: 319 ELK-DVDINAVRGSDGFRRAEIKA-GDLTLKVGVVTNLKNIDPVIEQLQAGTLDAHFVEV 376
Query: 390 MACPSGCLNGGGQIK-------PKPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSL 440
M CP GC++GGGQ K P+ QS + Y + L ++ ++ +
Sbjct: 377 MTCPEGCISGGGQPKLLSDTDVPEAYQSRR------NATYDHDKALPKRKSHESGAIKKI 430
Query: 441 YDEWLEQPGSEKAKKHVHTEY 461
Y E+LE+P K+ + +HT Y
Sbjct: 431 YAEFLEKPNGHKSHELLHTSY 451
>gi|270297046|ref|ZP_06203245.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
gi|270273033|gb|EFA18896.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
Length = 588
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG+ P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDHTNRLLEDLANPDKVVIVQTAPAVRAALGEEFGLPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E E + R + + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGAEILNRLTRYLQGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKTFWAKKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+F + D P+VD ++T E+ LI+ + F L + D
Sbjct: 373 KYECDREEF--KTDGN-----------PDVDYSISTRELARLIRRANIGFTLLTDKEFDL 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E V R + G+ ++ ++ F+ +R + R +++
Sbjct: 420 PMGASTGAGVIFG---TTGGVMEAVLRSVYEIYTGRTLD-NVNFEQVRGLAGVRRATIDL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G L K + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P +
Sbjct: 476 DGFEL-KVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDV 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P SE A+ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEEYLGKPLSETAEHLLHTHY 582
>gi|293401255|ref|ZP_06645399.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305381|gb|EFE46626.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 553
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 212/412 (51%), Gaps = 31/412 (7%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISL-SPQSRASLAEHFG-ISPLQV 115
C+ C C+ T ++E+ + I GK I+++ SP R +L E FG ++ V
Sbjct: 73 CIHCGQCVNVCPTNALVERHDWMDVSDMIKSGKKKIVAITSPSVRVALGEEFGMVAGSYV 132
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K++ L++LGV +FDT+ + DLT++E +E I R + + LP +S C
Sbjct: 133 EKQMVAALRALGVDYVFDTTFAADLTIMEEASELIDRIQHKK---------PLPQFTSCC 183
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E ++LP IS+ KSP TIK QK G ++Y V + PC KK
Sbjct: 184 PAWVKFVETYY-PHLLPNISTSKSPISMFAPTIKTWFAQKEGIAAQDLYVVAITPCTAKK 242
Query: 236 LEAAREDFVFQLD-SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
E RE+F D QE+ Y+D D V+TT E+ + ++ + + + ES D
Sbjct: 243 FEITREEFHDAADYHQEKPYQD-------CDKVVTTKELANWLRAENKDLTTVGESDYDT 295
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV-IEGHLEFKTIRNSD-FREVALE 352
++ G ++G ++GG E R A + + E L+ + +R D RE ++
Sbjct: 296 LMPRGSGAGVIFG---NTGGVMEAAIRSAYYFITKQQPDENLLKLEAVRGLDGVREASVT 352
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
++ +L + A+ +G N + + ++ K Y FVEVM CP GC+ GGGQ K G+ +
Sbjct: 353 IDNLSL-RVAIVHGTDNARKFLAHMEETKQHYDFVEVMTCPGGCIGGGGQPK-HIGEDMQ 410
Query: 413 ELI-KTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
E+ K + ++Y ++ + L + NP ++++Y+E+ P SE+A+K +HT Y
Sbjct: 411 EIRKKRIASLYDKDAAMTLRNSHDNPHIKAVYEEFYGTPLSERAEKLLHTSY 462
>gi|239908986|ref|YP_002955728.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239798853|dbj|BAH77842.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 475
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 174/387 (44%), Gaps = 36/387 (9%)
Query: 90 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 148
+ ++ +P R +LAE FG++P + KL L+ LG ++DT+ + D+T++E E
Sbjct: 113 RVAMVQCAPAVRVTLAEEFGLAPGSLTPGKLAAGLRRLGFAVVYDTTFAADVTVMEESAE 172
Query: 149 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208
+AR + LP+ +S CP W+ + E + P++SS KSPQQ GA
Sbjct: 173 LLARIAE---------GGRLPLFTSCCPAWVRHVETAW-PELTPHLSSCKSPQQMAGALF 222
Query: 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 268
K + GF P + V+VMPC KK EAAR + R + +VD+V+
Sbjct: 223 KSYAASLDGFDPAAVASVSVMPCTAKKHEAARPEL-----------RSGPAALADVDAVV 271
Query: 269 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 328
T E+ ++ ++F AL P D L G ++ G++GG E R A
Sbjct: 272 TVTELAAWLKEAGIDFAALPGEPFDAPLGRYSGAGVIF---GATGGVMEAALRTAVALCG 328
Query: 329 -GKVIEG---HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
G+ G + F T E+ G L + G N+ ++ V D+
Sbjct: 329 EGRETAGPESGIVF-TPAGPGVARAEFELAGNKLAAVTV-SGLANVGPLLEAVAAGTADF 386
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSL 440
QF+EVM CP GC+ GGG K PG L N A P + NP V L
Sbjct: 387 QFMEVMCCPGGCVAGGGTPKLLPGVD-VAAAVAARRQALGNHDRALPVRAAHANPAVTEL 445
Query: 441 YDEWLEQPGSEKAKKHVHTEYHPVVKS 467
Y +LE+P S ++ + +HT Y K
Sbjct: 446 YAAFLERPLSHRSHELLHTVYGGAAKG 472
>gi|366986543|ref|XP_003673038.1| hypothetical protein NCAS_0A00870 [Naumovozyma castellii CBS 4309]
gi|342298901|emb|CCC66647.1| hypothetical protein NCAS_0A00870 [Naumovozyma castellii CBS 4309]
Length = 511
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 213/478 (44%), Gaps = 99/478 (20%)
Query: 13 DLSDFIAPSQNCV---VSLKKATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSA 69
DL+DFI+P+ C V K+ N + T + E V I+L DCLACSGCITS+
Sbjct: 43 DLNDFISPALACTKPTVVNKEPVNVNENGEYEVTKEPTELEKVSITLSDCLACSGCITSS 102
Query: 70 ETVMLEKQSLDEFLSNINKGKA---VIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKS 125
E +ML +QS FL + +A + +S++PQ R S+A HF +S L++ L F +
Sbjct: 103 EEIMLSRQSYSVFLRDWEDSRATKTLCVSVAPQCRVSMAAHFQMSILELDLALVRLFREH 162
Query: 126 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 185
G + + T R+LT+ + + Q + ++ PMLS+ CPG++ Y EK
Sbjct: 163 FGARYVVGTQMGRNLTISRTNAKLMELKAQGKLNEK-------PMLSAICPGFVIYTEKT 215
Query: 186 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 245
+ P + +VKSPQQ GA + + E+YH+TVMPC+DKKLEA+R D
Sbjct: 216 KPG-LAPLLLNVKSPQQITGALFLDAMAEG-----QEMYHLTVMPCFDKKLEASRADGEH 269
Query: 246 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 305
EV V+T E++ + LEE LD DE L
Sbjct: 270 -----------------EVHCVITPKELVSM----------LEELELDLASFKSQDEKLL 302
Query: 306 YGVAGSSGGYAETVFRHAAKTL------FGKVIEG---HLEFKTI----RNSDFREVA-L 351
+ S G+ V + + + V+E H K I +NS+ E L
Sbjct: 303 W--EASPAGWDPRVHWSSNEGSSSGGYAYQYVLETQSLHPGSKMITLPGKNSNVVEYRLL 360
Query: 352 EVEGKTLLKFALCYGFQNLQNIVRKV--------------------KMRKCDY------- 384
+ EG TL A GF+N+QN+VR++ MR +
Sbjct: 361 DTEGHTLASAAELSGFRNIQNMVRQLDKKAVGQKRKVQVLRKRATSSMRNMNLDSKGTGN 420
Query: 385 --------QFVEVMACPSGCLNGGGQIKPKPGQSPKE-LIKTLETIYLENVMLADPFK 433
++EV A P GC+NGGG + + K L + L +Y + L DP K
Sbjct: 421 GIADPYKTDYIEVNASPGGCINGGGLLNDEQSTVRKRALAQELSELYSHSFTLVDPVK 478
>gi|345858375|ref|ZP_08810769.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344328569|gb|EGW39953.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 580
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 202/409 (49%), Gaps = 35/409 (8%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T ++E +D+ + + + V++ +P R +L E FG+ P +
Sbjct: 195 CTFCGQCVAVCPTGALMELDQVDKVWKALSDPTRFVVVQTAPAVRVALGEGFGLEPGTIV 254
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT + D+T++E +E + R K LP+L+S C
Sbjct: 255 TGKMVAALRRLGFDRVFDTDFAADVTIMEEASELVHRLKH---------GGRLPILTSCC 305
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP Q +G K + + G P +I V++MPC KK
Sbjct: 306 PAWVKFFEHQFPD-LLDIPSTCKSPHQMLGVLTKSYYAKTYGIDPQKITVVSIMPCIAKK 364
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + Q+ P+VD V+TT E+ +I+ ++F L++ D
Sbjct: 365 YEAARPEL-----GQDSV-------TPDVDIVITTRELARMIREAGIHFTNLKDEEFDHP 412
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L ++G ++GG E R A + L G+ +E +EF+ +R D +E + +
Sbjct: 413 LGESTGAAVIFG---TTGGVLEAALRTAYEVLTGETLE-KVEFEALRGMDGIKEAVIPIA 468
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G+ + A+ +G + + I+ K++ + Y +E+MACP GC+ GGGQ P + + L
Sbjct: 469 GRDF-RVAVTHGLGHARYILEKIQTGEAHYDAIEIMACPGGCIGGGGQ--PYHHGNVEIL 525
Query: 415 IKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
IY E+ L +NP V +LY +++ +P EKA + +HT Y
Sbjct: 526 KARANAIYQEDRSKPLRKSHENPAVLALYKDFIGEPYGEKAHELLHTSY 574
>gi|423222762|ref|ZP_17209232.1| hydrogenase, Fe-only [Bacteroides cellulosilyticus CL02T12C19]
gi|392641126|gb|EIY34912.1| hydrogenase, Fe-only [Bacteroides cellulosilyticus CL02T12C19]
Length = 587
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 207/414 (50%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI- 110
+S +C C C+ + E+ + L ++ N K VI+ +P RA+L E FG+
Sbjct: 193 MSDSECTYCGQCVAVCPVGALTERDHTNRLLLDLENPDKVVIVQTAPAVRAALGEEFGLP 252
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V K+ L+ LG +FDT + DLT++E E + R + D + LP+
Sbjct: 253 AGTLVTGKMVYALRELGFDYVFDTDFAADLTIMEEGAEILNRLTRYMNGD---KSVRLPI 309
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E +L S+ +SPQQ G+ K +K+G +++ V++MP
Sbjct: 310 LTSCCPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKTFWAEKMGIPREKLVVVSIMP 368
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R +F + D P+VD ++T E+ LI+ V F L +
Sbjct: 369 CLAKKYECDRNEF--KTDGS-----------PDVDYSISTRELARLIRRANVGFTLLTDK 415
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREV 349
D+ + G ++G ++GG E R + G+ +E ++ F+ +R + R
Sbjct: 416 EFDQPMGASTGAGVIFG---TTGGVMEAALRSVYEIYTGRTLE-NVNFEQVRGLAGVRRA 471
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++G L K + +G N ++++ ++ + +Y +E+MACP GC+ GGGQ P
Sbjct: 472 TIDLDGFEL-KVGIAHGLGNARHLLEDIRHGRNEYHVIEIMACPGGCIGGGGQ--PLHHG 528
Query: 410 SPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L +Y E+ L +NP +++LY+E+L +P SE A++ +HT Y
Sbjct: 529 NSEVLYARANALYREDAQKPLRKSHENPYIKTLYEEYLGRPLSETAERLLHTHY 582
>gi|410724499|ref|ZP_11363690.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410602199|gb|EKQ56687.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 646
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 209/420 (49%), Gaps = 31/420 (7%)
Query: 54 ISLKDCLACSGCITS--AETVMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
I C C C+++ + + +L FL ++ K VI ++P R ++ E FG
Sbjct: 247 IDYNRCTHCGACVSACPVDAITAGDNTL-LFLRDLATPNKIVITQMAPAIRVAIGEAFGF 305
Query: 111 SPL-QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
P V KKL LK LGV +FDT+ DLT++E E R ++ D+ N LP
Sbjct: 306 EPGDNVEKKLAAGLKKLGVNYVFDTTWGADLTIMEEAAELQDRLERHLAGDE---NVKLP 362
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
+L+S CP WI + E+ +L SS KSP + K ++ G DE+ V +M
Sbjct: 363 ILTSCCPSWIKFIEQNYAD-MLDVPSSAKSPMEMFAIVAKEIWAKEKGLSRDEVTSVAIM 421
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK EA+R +F ++ +VD V+TT E++ + + ++ + LE+
Sbjct: 422 PCIAKKYEASRPEFSVDMNY-------------DVDYVITTRELIKIFENSGIDLKTLED 468
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FRE 348
+D ++ G ++ G +GG E R A + + G IE ++EF+ +R D FR
Sbjct: 469 EEIDSVMGEYTGAGIIF---GRTGGVIEAAVRTALENITGNRIE-NIEFEQLRGWDGFRI 524
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPK 406
LEV+ L+ + +G + ++ K++ + + +E+MAC GC+ GGGQ IK
Sbjct: 525 CELEVD-DIKLRIGVAHGLREAAKMLDKIRSGEEFFHAIEIMACIGGCIGGGGQPKIKKN 583
Query: 407 PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
Q ++ + L I V L +NP V ++YD++L+ P S KA + +HT Y P +K
Sbjct: 584 KQQVLEQRAEGLNNIDRSKV-LRRSNENPEVLAIYDKYLDHPLSNKAHELLHTTYFPRMK 642
>gi|298481911|ref|ZP_07000100.1| hydrogenase large subunit HymC [Bacteroides sp. D22]
gi|298271775|gb|EFI13347.1| hydrogenase large subunit HymC [Bacteroides sp. D22]
Length = 588
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 204/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
+ E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 RYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIFG---TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L K + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFEL-KVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|169831496|ref|YP_001717478.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
gi|169638340|gb|ACA59846.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
Length = 590
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 211/458 (46%), Gaps = 54/458 (11%)
Query: 22 QNCVVSLKKATFKNPDKPQVSTSSKQQAEPVKISLKD--CLACSGC-ITSAETVMLEKQS 78
+ CV + + PQ+ + A P + L D C+ C C + + E+
Sbjct: 153 RRCVTVCAEVQTVHAIGPQLRGFATVIAPPYNLPLGDSVCVHCGQCALVCPVGAIYERDD 212
Query: 79 LDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSC 136
+ + + K V++ +P +R +L E FG+ P V K+ L+ LG +FDT
Sbjct: 213 TGAVWAALADPAKHVVVQTAPATRVTLGEAFGLPPGTPVTGKMVAALRRLGFDRVFDTDF 272
Query: 137 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 196
+ DLT++E NE I R + LPM++S PGWI + E + LP++S+
Sbjct: 273 TADLTIVEEGNELIHRLTK---------GGPLPMITSCSPGWIKFIEHFYPEF-LPHLST 322
Query: 197 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 256
KSPQQ GA K + ++ G P ++ V++MPC KK EA R + YRD
Sbjct: 323 AKSPQQMFGALAKTYYAEQAGIDPKDMVVVSIMPCTAKKFEAGRPEM------NASGYRD 376
Query: 257 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA 316
VD VLTT E++ ++ ++ + + D+ + G ++ G++GG
Sbjct: 377 -------VDMVLTTRELVRMLHEACIDLNNMPDEEYDRPMGLSTGAGAIF---GATGGVM 426
Query: 317 ETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVR 375
E R A + L GK + G ++ + +R D R+ A+++EG ++ + +G + + ++
Sbjct: 427 EAALRTAYELLTGKPLPG-IDIEVVRGLDGVRQAAIDLEGNP-VRVMVAHGLGHARMLME 484
Query: 376 KVKMRKC-DYQFVEVMA---------CPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 425
K+K + D F+EVMA C N P Q I L+ +
Sbjct: 485 KLKAGELKDCHFIEVMACPGGCIGGGGQPICAN------PDVRQRRAAGIYRLD----KG 534
Query: 426 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L +NP + LY+ +L +P EK+ K +HT Y P
Sbjct: 535 MKLRKSHENPAIIELYERFLGEPLGEKSHKLLHTSYTP 572
>gi|302337009|ref|YP_003802215.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
gi|301634194|gb|ADK79621.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
Length = 596
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 187/385 (48%), Gaps = 34/385 (8%)
Query: 92 VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 150
V++ +P RA+L E FG+ P V K+ T L+ LG ++FDT + DLT++E E +
Sbjct: 227 VVVQTAPAIRAALGECFGLPPGTLVTGKMVTALRKLGFDAVFDTDFAADLTIMEEGTELL 286
Query: 151 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 210
R + + + LPM +S PGW+ YAE + LP ISS KSPQQ GA K
Sbjct: 287 TRLQAALTGGPDEKAPPLPMFTSCSPGWVKYAEHYFPDF-LPNISSCKSPQQMFGAVAKT 345
Query: 211 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 270
+ +K G P +I V+VMPC KK EA R + + D VD VLTT
Sbjct: 346 YYAKKKGIDPAKIVVVSVMPCTAKKFEAGRPEM------NASGFSD-------VDYVLTT 392
Query: 271 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 330
E+ LI+ ++F +LEES +D L ++ ++GG E R + + G
Sbjct: 393 RELGRLIKQAGIDFVSLEESSMDAPLGISTGAADIF---ANTGGVMEAALRTVWEIVTGT 449
Query: 331 VIEG-HLEFKTIRN-SDFREVALEVEGKTL---------LKFALCYGFQNLQNIVRKVKM 379
+ +L K + +E +L VE LK A+ +G ++ +++
Sbjct: 450 PLPTENLHIKEVAGLKGIKEASLTVETTVKEWEFLKGVELKVAVAHGLSRAGTLLSEIRE 509
Query: 380 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLV 437
+ +Y FVE+M CP GC+ GGGQ P+ + + IY E+ L NP +
Sbjct: 510 GRKNYHFVEIMTCPGGCIGGGGQ--PRFTDDAVRQAR-IAAIYREDEGKKLRASHLNPAI 566
Query: 438 RSLYDEWLEQPGSEKAKKHVHTEYH 462
LY+E+L +P EK+ +HT YH
Sbjct: 567 IQLYEEYLGKPLGEKSHHLLHTIYH 591
>gi|423343770|ref|ZP_17321483.1| hydrogenase, Fe-only [Parabacteroides johnsonii CL02T12C29]
gi|409214792|gb|EKN07801.1| hydrogenase, Fe-only [Parabacteroides johnsonii CL02T12C29]
Length = 584
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 202/414 (48%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I+ C C C++ L ++ + + + + K VI +P R +L FG
Sbjct: 178 IAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPDKIVIAQTAPAVRTALGRDFGYE 237
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ + L+ LG +FDT + DLT++E E + R + + D E +P+
Sbjct: 238 PGTLVTGKMVSALRGLGFDYVFDTDFAADLTIMEEGTELLQRIGKYLKGDQE---VKMPL 294
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CPGW+ + E+ +L +S+ KSPQQ GA K + +KLG +I V++MP
Sbjct: 295 MTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKQIVVVSIMP 353
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA+R +F + P+VD + T E+ LI+ +NF L +S
Sbjct: 354 CLAKKYEASRPEFAVDGN-------------PDVDISIYTRELARLIRYANINFSELPDS 400
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ L G ++ G++GG E R A + L+ K ++F+ +R + R
Sbjct: 401 DFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LYTKKALPKIDFEELRGLEGIRSA 456
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++ +G T +K + +G N + ++ VK Y +EVMACP GC+ GGGQ P
Sbjct: 457 TIDFDG-TPIKIGIAHGLGNARKLIEDVKNGTSPYHAIEVMACPGGCIGGGGQ--PFHRG 513
Query: 410 SPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L K +Y E+ L +NP +++LY +L +P +A + +HT Y
Sbjct: 514 RMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYANYLGEPCGPRAHELLHTHY 567
>gi|302335612|ref|YP_003800819.1| hydrogenase, Fe-only [Olsenella uli DSM 7084]
gi|301319452|gb|ADK67939.1| hydrogenase, Fe-only [Olsenella uli DSM 7084]
Length = 587
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 202/409 (49%), Gaps = 26/409 (6%)
Query: 58 DCLACSGCITSAETVMLEKQSLDE--FLSNINKGKAVIISLSPQSRASLAEHFGISPLQ- 114
DC C CIT T L ++ E F + + I+ ++P R S + FG+ +
Sbjct: 187 DCTYCGQCITHCPTGALRERDDTERVFRALADPNVTTIVQVAPSVRTSWGDEFGLGADEG 246
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
+L + L+ +G I +T S DLT++E E +A + + D + LPM +S
Sbjct: 247 SLGRLVSALRPMGFDYIVNTDFSADLTIMEEGTELLAHMAREGDKD---AAERLPMFTSC 303
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + + ++ ++S+ KSPQQ GA +K + LG P I+ V++MPC K
Sbjct: 304 CPGWVRFVKAHY-PQLVDHVSTSKSPQQMFGAVVKSYYADLLGLDPHGIFSVSIMPCVAK 362
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K EA ++ + D P+VD+VLT EV +I+ + V +ALE S D+
Sbjct: 363 KAEA-------DIECMNDACGD-----PDVDAVLTVREVTRMIRAEHVCVDALEPSAFDE 410
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
L G ++ G++GG E R A + G+ E + F+ +R ++E ++
Sbjct: 411 PLGMGTGAGIIF---GATGGVMEAALRTAHHIVTGRSPEEDM-FERVRGLEGWKEATFDL 466
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G T ++ A+ G N + + V + Y FVEVMACP GC+ GGGQ + + E
Sbjct: 467 AG-TSVRVAVASGLANAKRLCDAVLAGRASYDFVEVMACPGGCVGGGGQPIREGEERAGE 525
Query: 414 LIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ L + + + ++NP + Y+E+ P S++A++ +HT+ H
Sbjct: 526 RGQVLYGLD-KIAQYRNSYENPSIVRCYEEYFGAPMSKRAEELLHTDQH 573
>gi|218260394|ref|ZP_03475733.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii
DSM 18315]
gi|218224548|gb|EEC97198.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii
DSM 18315]
Length = 596
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 202/414 (48%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGIS 111
I+ C C C++ L ++ + + + + K VI +P R +L FG
Sbjct: 190 IAGSTCSYCGQCVSVCPVNALSGRNTQQPVLDALADPDKIVIAQTAPAVRTALGRDFGYE 249
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V K+ + L+ LG +FDT + DLT++E E + R + + D E +P+
Sbjct: 250 PGTLVTGKMVSALRGLGFDYVFDTDFAADLTIMEEGTELLQRIGKYLKGDQE---VKMPL 306
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
++S CPGW+ + E+ +L +S+ KSPQQ GA K + +KLG +I V++MP
Sbjct: 307 MTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIAKSYFAEKLGVDRKQIVVVSIMP 365
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA+R +F + P+VD + T E+ LI+ +NF L +S
Sbjct: 366 CLAKKYEASRPEFAVDGN-------------PDVDISIYTRELARLIRYANINFAELPDS 412
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D+ L G ++ G++GG E R A + L+ K ++F+ +R + R
Sbjct: 413 NFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LYTKKALPKIDFEELRGLEGIRSA 468
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++ +G T +K + +G N + ++ VK Y +EVMACP GC+ GGGQ P
Sbjct: 469 TIDFDG-TPIKIGIAHGLGNARKLIEDVKNGTSPYHAIEVMACPGGCIGGGGQ--PFHRG 525
Query: 410 SPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ L K +Y E+ L +NP +++LY +L +P +A + +HT Y
Sbjct: 526 RMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYANYLGEPCGPRAHELLHTHY 579
>gi|427387949|ref|ZP_18883934.1| hydrogenase, Fe-only [Bacteroides oleiciplenus YIT 12058]
gi|425725348|gb|EKU88221.1| hydrogenase, Fe-only [Bacteroides oleiciplenus YIT 12058]
Length = 588
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 207/414 (50%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI- 110
+S +C C C+ + E+ + L ++ N K VI+ +P RA+L E FG+
Sbjct: 193 MSDSECTYCGQCVAVCPVGALTERDHTNRLLLDLENPDKVVIVQTAPAVRAALGEEFGLP 252
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V K+ L+ LG +FDT + DLT++E E + R + D + LP+
Sbjct: 253 AGTLVTGKMVYALRELGFDYVFDTDFAADLTIMEEGAEILNRLTRYMNGD---KSVRLPI 309
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E +L S+ +SPQQ G+ K +K+G +++ V++MP
Sbjct: 310 LTSCCPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKTFWAEKMGIPREKLVVVSIMP 368
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R +F + D P+VD ++T E+ LI+ + F L +
Sbjct: 369 CLAKKYECDRNEF--KTDGS-----------PDVDYSISTRELARLIRRANIGFTLLTDK 415
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREV 349
D+ + G ++G ++GG E R + G+ +E ++ F+ +R + R
Sbjct: 416 EFDQPMGASTGAGVIFG---TTGGVMEAALRSVYEIYTGRTLE-NVNFEQVRGLAGVRRA 471
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++G L K + +G N ++++ ++ + +Y +E+MACP GC+ GGGQ P
Sbjct: 472 TIDLDGFEL-KVGIAHGLGNARHLLEDIRHGRNEYHVIEIMACPGGCIGGGGQ--PLHHG 528
Query: 410 SPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L +Y E+ L +NP +++LY+E+L +P SE A++ +HT Y
Sbjct: 529 NSEVLYARANALYREDAQKPLRKSHENPYIKTLYEEYLGRPLSETAERLLHTHY 582
>gi|381168353|ref|ZP_09877549.1| Hydrogenase, Fe-only [Phaeospirillum molischianum DSM 120]
gi|380682503|emb|CCG42367.1| Hydrogenase, Fe-only [Phaeospirillum molischianum DSM 120]
Length = 641
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 192/419 (45%), Gaps = 56/419 (13%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI-SPLQV 115
C+ C CI T + E+ DE + ++ K V+I +P RA++ E FG+ + QV
Sbjct: 222 CINCGQCINRCPTGALTEQDQTDEVWAMLDDPTKHVVIQTAPSPRAAIGECFGLEAGTQV 281
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+L T LK +G +FDT+ + DLT+IE E I R Q+ D ++ +LP +S
Sbjct: 282 TYQLNTALKRMGFDGVFDTNHTADLTIIEEGTELIIRLYQALVQGD--TDIALPQFTSCS 339
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
PGW+ Y E +P +SS KSP Q GA +K + K G P +I V +MPC KK
Sbjct: 340 PGWVKYLE-HFYPNAVPNLSSAKSPMQMFGALLKTYYADKKGIDPKDIVVVALMPCTAKK 398
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E R + ++D VD LTT E+ +I ++ L +SP D+
Sbjct: 399 FECNRPELC------SSGFKD-------VDYALTTRELAKMIAESGIDLPHLPKSPFDEP 445
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH------LEFKTIRNSDFREV 349
+ G+++ G++GG E R + + G+ +E L + I + E+
Sbjct: 446 FGDGTGSGNIF---GATGGVMEAALRTVIEVVTGQKVENFFDHANILPVRGIEGARMAEI 502
Query: 350 ALEVEGK-----------------TLLKFALCYGFQNLQNIVRKVK----MRKCDYQFVE 388
+ G+ L+ + +G N + ++ +K KC F+E
Sbjct: 503 PITEVGQVPDLFKSLVPDWDWLKGVTLRVGIVHGSANAKRVMEDIKAGGPFSKC--HFIE 560
Query: 389 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWL 445
MACPSGCL GGGQ P P + K + IY + + +NP+V LY E+L
Sbjct: 561 FMACPSGCLGGGGQ--PIPTDATIRA-KRSQAIYQIDSDFSIRKSHENPVVLQLYREFL 616
>gi|423212935|ref|ZP_17199464.1| hydrogenase, Fe-only [Bacteroides xylanisolvens CL03T12C04]
gi|392694191|gb|EIY87419.1| hydrogenase, Fe-only [Bacteroides xylanisolvens CL03T12C04]
Length = 588
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P E ++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEEYLGKPLGEISETLLHTHY 582
>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 646
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 214/422 (50%), Gaps = 35/422 (8%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I C C CI++ + ++ +FL ++ K VI ++P R ++ E FG
Sbjct: 249 IDYNKCTHCGACISACPVDAITAGNNIIKFLRDLATPNKVVITQMAPAIRVAIGEAFGFE 308
Query: 112 PLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + V KK+ L+ LGV +FDT+ DLT++E E R ++ D+ N LP+
Sbjct: 309 PGENVEKKIAAGLRKLGVDYVFDTTWGADLTIMEEAAELQERLEKYLAGDE---NVKLPI 365
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP WI + E +L SS KSP Q K ++ G +E+ V +MP
Sbjct: 366 LTSCCPSWIKFIENNYAD-MLEVPSSAKSPMQMFATIAKEIWAKEKGLSREEVTSVAIMP 424
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C K EA+R +F ++ +VD V+TT E++ + + ++ + +E+
Sbjct: 425 CVAKIYEASRVEFSVDMNY-------------DVDYVITTKELIKIFEKSGIDLKEIEDE 471
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
+D ++ G ++G +GG E R A + + GK I+ ++EF+ +R D FR
Sbjct: 472 EIDAVMGEYTGAGIIFG---RTGGVIEAATRTAIENMTGKRID-NIEFEGLRGWDGFRIC 527
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
LEV G+ L+ + +G + ++ K++ + + +E+MAC GC+ GGGQ PK +
Sbjct: 528 ELEV-GELKLRIGVAHGLKEAAKMLDKIRSGEEFFHAIEIMACVGGCIGGGGQ--PKIRK 584
Query: 410 SPKELI-KTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 464
+ ++++ K E L ++ A + NP V +LY ++L+ P S KA + +HT+Y P
Sbjct: 585 NKQQVLEKRAEG--LNDIDRAKTLRRSNENPEVLALYKKYLDHPLSHKAHELLHTKYFPK 642
Query: 465 VK 466
VK
Sbjct: 643 VK 644
>gi|423287866|ref|ZP_17266717.1| hydrogenase, Fe-only [Bacteroides ovatus CL02T12C04]
gi|392671881|gb|EIY65352.1| hydrogenase, Fe-only [Bacteroides ovatus CL02T12C04]
Length = 588
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P E ++ +HT Y
Sbjct: 533 LYARANALYREDTNKPLRKSHENPYIKTLYEEYLGKPLGEISETLLHTHY 582
>gi|237722431|ref|ZP_04552912.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
gi|229448241|gb|EEO54032.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
Length = 588
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E AR++F IP+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECARDEFKVN-------------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++ G++GG E R + G+ ++ ++ F+ +R + R + +
Sbjct: 420 PMGESTGAGVIF---GTTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLNGVRRATINL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G LK + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P + +
Sbjct: 476 NGFE-LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEI 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P E ++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEEYLGKPLGEISETLLHTHY 582
>gi|256086412|ref|XP_002579393.1| hypothetical protein [Schistosoma mansoni]
gi|353229755|emb|CCD75926.1| let1/narf-related [Schistosoma mansoni]
Length = 436
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 204/443 (46%), Gaps = 128/443 (28%)
Query: 123 LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYA 182
L S+GV + D + +RD+ L EA EFI +K+ D++ +LP+ SS CPGWICYA
Sbjct: 12 LFSIGVHLVTDVTWARDICLYEAGLEFIEHFKKR----DDKCTDTLPLFSSICPGWICYA 67
Query: 183 EKQ-LGSYIL-----------PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
EK L S IL P+IS+V+SPQQ G IK LG ++ +HV++MP
Sbjct: 68 EKSPLTSSILSSSGYREFSIIPHISNVRSPQQIAGRVIK-----LLG--EEKCFHVSIMP 120
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL------KAVNF 284
C+DKKLEA+R +F S + Y +P+VD VL T E+L ++ V+F
Sbjct: 121 CFDKKLEASRVEFSVPSKSISDFY------VPDVDLVLATNELLCFLESLIDESNDTVSF 174
Query: 285 EALEES-----------------------------PLDKMLTNVDDEGHLYGVAGS-SGG 314
E + D V+ +Y +GS SGG
Sbjct: 175 SFAEHTSEVGESQRLILERLYEIFCVKMSQEKTGVAFDHFPLRVNKMLPMYRHSGSGSGG 234
Query: 315 YAETVFRHAAKTLFGKVI------EGHLEFKTIRNSDFREVAL----------------- 351
YA + + AA+ LF + + + + ++N D +E+ L
Sbjct: 235 YAACILKMAAEELFSVKLKPDILKDERVLTRYLQNRDIQELILFNSKEDRSLAESLLSSL 294
Query: 352 ---------EVEGKTLLKFALCYGFQNLQNIVRKVK----MRKCD--------------- 383
E + K +L F + GF+N+Q IV+ ++ +KCD
Sbjct: 295 SNRTPYRHFETQPKAMLVFGIANGFRNIQTIVQYLRKTYQFKKCDDPDLIKSRQIKVHYP 354
Query: 384 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 443
+ +VEVMACP+GCLNGGGQ+K Q+ EL +L +P N LV++LY E
Sbjct: 355 FDYVEVMACPNGCLNGGGQVKEIMAQT-SELYASLPVF--------EPMSNDLVKNLY-E 404
Query: 444 WLEQPGSEKAKKHVHTEYHPVVK 466
+++ + K++HT Y V K
Sbjct: 405 YIK--SKDPDLKYLHTTYKTVPK 425
>gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3]
gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3]
Length = 410
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 185/358 (51%), Gaps = 26/358 (7%)
Query: 59 CLACSGCITSAETVMLEK--QSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
CL+C C+ + +E+ +L+ + + +K V+ ++P R ++ E FG+ +
Sbjct: 52 CLSCGQCLINCPFSAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGEL 111
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL + G K IFD + + DLT++E +EFI R + + E + +LP +S
Sbjct: 112 VTGKLYGAMNQAGFK-IFDCNFAADLTIMEEGSEFIHRLHANVKG--EENAGALPQFTSC 168
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ Y E + + +LP +S+ KSPQQ G K + + +P+ I+ V+VMPC K
Sbjct: 169 CPGWVRYLETRYPA-LLPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSK 227
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIP---EVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KLEA+R +F +S + ++++G P ++D+VLTT E+ L+++ ++ E
Sbjct: 228 KLEASRPEF----NSAWQYHQEQGANTPSYQDIDAVLTTREMAQLLKMLDIDLANTPEYQ 283
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA- 350
D M + G ++ G++GG E R A K L G + LEF+ +R + A
Sbjct: 284 GDSMFSEYTGAGTIF---GTTGGVMEAALRTAHKVLTGTEM-AKLEFEPVRGLKGVKSAS 339
Query: 351 -----LEVEGKTLLKFALCYGF-QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
++ + A+ + N++ ++R V Y F+EVM C GC+NGGGQ
Sbjct: 340 VSLFDTQLNQNVTVNVAVVHDMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQ 397
>gi|227498965|ref|ZP_03929102.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904414|gb|EEH90332.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 580
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 201/409 (49%), Gaps = 34/409 (8%)
Query: 58 DCLACSGCITSAETVML-EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQV 115
DC C CIT T L E+ D+ S + + + I+ ++P R +L E +G+ P +
Sbjct: 190 DCTLCGQCITHCPTAGLRERDDTDKVYSALANPELIPIVQIAPAVRTALCEAYGVPPQEA 249
Query: 116 -FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
KL L+ +G + ++DT DLT++E NEF+ ++K + P+ +S
Sbjct: 250 PMGKLAAALRRMGFRYVYDTCFGADLTIMEEANEFLEKFKNGK-------TKKFPLFTSC 302
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ + + + + +S+ KSPQQ GA K + +KLG P++++ V++MPC K
Sbjct: 303 CPGWVRFLKGKFPE-LTDRLSTSKSPQQMFGAIAKTWLAKKLGTEPEKLFLVSIMPCLAK 361
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E L + + + + VD VLTT E + ++ + L+E PLD
Sbjct: 362 KAEC-------DLPTMQTQHGKD------VDCVLTTREFIRMLNADRIYPHLLKEEPLDD 408
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEV 353
+ G ++GV +GG E R A + GK + L F IR RE +
Sbjct: 409 PMGTHTGAGTIFGV---TGGVMEAALRTAYYEVTGKDPDPDL-FADIRTGPALRERTYTL 464
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G + A+ G N ++++ +K K Y FVEVMACP GC GGGQ P +
Sbjct: 465 GGADV-HCAVVSGLGNARHLLEAIKAGKVHYDFVEVMACPGGCSGGGGQ--PISIDDEER 521
Query: 414 LIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+++Y + + L +NP + +LY E+L P SEKA++ +HT+
Sbjct: 522 AEARGQSLYALDQKMALRLSHRNPQIEALYAEFLGSPLSEKAEELLHTD 570
>gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
Length = 410
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 184/358 (51%), Gaps = 26/358 (7%)
Query: 59 CLACSGCITSAETVMLEK--QSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ- 114
CL+C C+ + +E+ +L+ + + +K V+ ++P R ++ E FG+ +
Sbjct: 52 CLSCGQCLINCPFSAIEETHSALETVIKKLADKNTTVVGIIAPAVRVAIGEEFGLGTGEL 111
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V KL + G K IFD + + DLT++E +EFI R + + E + +LP +S
Sbjct: 112 VTGKLYGAMNQAGFK-IFDCNFAADLTIMEEGSEFIHRLHAN--AKGEENAGALPQFTSC 168
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CPGW+ Y E + + +LP +S+ KSPQQ G K + + +P+ I+ V+VMPC K
Sbjct: 169 CPGWVRYLETRYPA-LLPNLSTAKSPQQMAGTVAKTYGAKVYQMQPENIFTVSVMPCTSK 227
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIP---EVDSVLTTGEVLDLIQLKAVNFEALEESP 291
KLEA+R +F +S + +++ G P ++D+VLTT E+ L+++ ++ E
Sbjct: 228 KLEASRPEF----NSAWQYHQEHGANTPSYQDIDAVLTTREMAQLLKMLDIDLANTPEYQ 283
Query: 292 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA- 350
D + + G ++ G++GG E R A K L G + LEF+ +R + A
Sbjct: 284 GDSLFSEYTGAGTIF---GTTGGVMEAALRTAHKVLTGTEM-AKLEFEPVRGLKGVKSAS 339
Query: 351 -----LEVEGKTLLKFALCYGF-QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ 402
E+ + A+ + N++ ++R V Y F+EVM C GC+NGGGQ
Sbjct: 340 VSLFDTELNQNVTVNVAVVHDMGNNIEPVLRDVMAGTSPYHFIEVMNCAGGCVNGGGQ 397
>gi|404494164|ref|YP_006718270.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
gi|77546179|gb|ABA89741.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
Length = 598
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/419 (28%), Positives = 209/419 (49%), Gaps = 42/419 (10%)
Query: 54 ISLKDCLACSGC-ITSAETVMLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGIS 111
++ DC++C C + + E+ +E + +N + ++ +P +R +L E F +
Sbjct: 189 LNTSDCVSCGQCTLVCPVGALAERDDTEEVIDYLNDPEMFTVVQFAPATRVALGEEFNMK 248
Query: 112 P-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P V ++ T + +G + DT+ + D+ ++E +E + R K+ +LP+
Sbjct: 249 PGSNVEGQMITAFRKMGADVVLDTNFTADVVIMEEGSELLHRVKEG---------GTLPL 299
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S PGWI Y EK I +S+ KSPQQ +GA K ++ +K+ P ++ +++MP
Sbjct: 300 LTSCSPGWINYVEKFYPDMIC-NLSTTKSPQQCLGAIAKTYLAEKMAIDPAKMRVISIMP 358
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK EA R +F + PEVD VLTT E+ L++ + + LEE
Sbjct: 359 CTAKKEEAKRPEFTIG-------------DRPEVDVVLTTRELGSLLKREGIWLPDLEEG 405
Query: 291 PLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-F 346
D V G A GS+GG E R + G+ I G ++ K +R +
Sbjct: 406 NFDNPWMGV-----ATGAAEIFGSTGGVMEAAVRTVHYIVTGEEIPG-VDLKAVRGLEGI 459
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
RE ++++ + A+ ++ + ++ +V+ + +Y F+EVMACP GC+ GGGQ PK
Sbjct: 460 REASVDLGELGTVNVAIANSLKSARELLERVRSGEKEYHFIEVMACPGGCMGGGGQ--PK 517
Query: 407 PGQSPKELIKTLETIYLE---NVMLADPFKNPLVRSLYDEWLEQP-GSEKAKKHVHTEY 461
++ +E + + + L +NPLV+ +YD + +P SE++ K++HT Y
Sbjct: 518 HKRNYREFLTARQKAIYDIDAGSELRQSHRNPLVKEMYDSYFGEPYSSERSHKYLHTTY 576
>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
Alaska E43]
gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
Alaska E43]
Length = 646
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 209/419 (49%), Gaps = 29/419 (6%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS 111
I C C CI++ + ++ +FL ++ K VI ++P R ++ E FG
Sbjct: 249 IDYNKCTHCGACISACPVDAITAGNNIIKFLRDLATPNKVVITQMAPAIRVAIGEAFGFE 308
Query: 112 PLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
P + V KK+ L+ LGV +FDT+ DLT++E E R ++ D+ N LP+
Sbjct: 309 PGENVEKKIAAGLRKLGVDYVFDTTWGADLTIMEEAAELQERLEKYLAGDE---NVKLPI 365
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP WI + E +L SS KSP Q K ++ G +E+ V +MP
Sbjct: 366 LTSCCPSWIKFIENNYAD-MLEVPSSAKSPMQMFATIAKEIWAKEKGLSREEVTSVAIMP 424
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C K EA+R +F ++ +VD V+TT E++ + + ++ + +E+
Sbjct: 425 CVAKIYEASRVEFSVDMNY-------------DVDYVITTKELIKIFEKSGIDLKEIEDE 471
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
+D ++ G ++G +GG E R A + + GK I+ ++EF+ +R D FR
Sbjct: 472 EIDAVMGEYTGAGIIFG---RTGGVIEAATRTAIENMTGKRID-NIEFEGLRGWDGFRIC 527
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKP 407
LEV G+ L+ + +G + ++ K++ + + +E+MAC GC+ GGGQ I+
Sbjct: 528 ELEV-GELKLRIGVAHGLKEAAKMLDKIRSGEEFFHAIEIMACVGGCIGGGGQPKIRKNK 586
Query: 408 GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 466
Q ++ L I + L +NP V +LY ++L+ P S KA + +HT+Y P VK
Sbjct: 587 QQVLEKRADGLNDIDRAKI-LRRSNENPEVLALYKKYLDHPLSHKAHELLHTKYFPKVK 644
>gi|302391065|ref|YP_003826885.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
gi|302203142|gb|ADL11820.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
Length = 583
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 193/385 (50%), Gaps = 34/385 (8%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 145
++ + V++ ++P +AS+ E FG+ P + KL T L+ LG IF T + DLT++E
Sbjct: 229 DEDQHVVVQVAPAIQASIGEEFGMEPGTIVTGKLVTALQELGFDKIFSTEFTADLTIMEE 288
Query: 146 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 205
NE + R K ++ LP +S CPGW+ + E Y L +S+ KSPQQ
Sbjct: 289 GNELLKRIKGQKK---------LPQFTSCCPGWVKFCEHNYPEY-LDNLSTAKSPQQMFS 338
Query: 206 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 265
K + ++ P++I+ V+VMPC KK E RE+ D G + + D
Sbjct: 339 TLAKTYYAEQEDIDPEDIFTVSVMPCTAKKFEKNREEMA-----------DSGHQ--DTD 385
Query: 266 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 325
+VLTT E +I+ + F L +S DKM+ G ++G ++GG E R A +
Sbjct: 386 AVLTTREAARMIKEMGIQFHKLTDSKYDKMMGAHTGAGTIFG---TTGGVMEAALRTAYE 442
Query: 326 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 384
L + L+ +R D R+ +++ G + K A+ +G +N +++ K++ + +Y
Sbjct: 443 VLTDDELP-RLDLTEVRGMDGIRDANVQLNGDNV-KVAVVHGLKNAADLLDKIEAGEIEY 500
Query: 385 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYD 442
FVEVMACP GC+ GGGQ P + K E +Y + + +NP + LY+
Sbjct: 501 DFVEVMACPGGCIGGGGQ--PFASTTMDVKAKRAEALYQTDKANTIRKSHENPQIIKLYE 558
Query: 443 EWLEQPGSEKAKKHVHTEYHPVVKS 467
++L +P S + +HT Y K+
Sbjct: 559 DYLGEPLSSDSHHLLHTSYQERSKN 583
>gi|182413362|ref|YP_001818428.1| hydrogenase, Fe-only [Opitutus terrae PB90-1]
gi|177840576|gb|ACB74828.1| hydrogenase, Fe-only [Opitutus terrae PB90-1]
Length = 581
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 215/414 (51%), Gaps = 40/414 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQV 115
C+ C C T ++EK S + ++ K ++ ++P R ++ E FG+ P +
Sbjct: 189 CVKCGQCSAHCPTGAIVEKDETATVWSALRDEDKICVVQIAPSVRVTVGEAFGLPPGTNL 248
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
KKL + L+ LG K++FDT+ + D+T++E +EF+ R+ + LP+++S C
Sbjct: 249 TKKLYSALRRLGFKAVFDTNFAADVTIVEEASEFVERFAHKR--------GPLPLITSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W + EK+ +I + S+ KSPQQ +G K + QK G P +++ V++MPC KK
Sbjct: 301 PSWTDHMEKRHYDFIDNF-STAKSPQQMLGVLAKTYYAQKAGVDPSKLFMVSIMPCTAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
++L EE + +VD VLTT E+ +++ + F AL ++ D +
Sbjct: 360 ---------YELSRTEEMHAS---GFADVDVVLTTRELARMLKQSGIEFLALPDAEPDSI 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE 354
L + G ++ G++GG E R A GK ++ ++E +R + +E +++
Sbjct: 408 LGSYSGAGTIF---GATGGVMEAAVRTAYHYATGKKLK-NVELTAVRGLAGVKEGEIDIN 463
Query: 355 GKTLLKFALCYGFQNLQNIVRKVK-MRKCD----YQFVEVMACPSGCLNGGGQIKPKPGQ 409
G ++ A+ +G N++ ++ +V+ RK Y F+EVMACP GC+ GGGQ G
Sbjct: 464 GAK-VRVAVAHGLANVEQVLERVREARKAGKETPYHFIEVMACPGGCIGGGGQ---PYGV 519
Query: 410 SPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ +K + +Y + + + +NP V +Y ++L +P S KA + +HT Y
Sbjct: 520 DNERRMKRIAGLYQDDRDRTVRYSHENPEVVQVYRDFLGKPLSGKAHELLHTRY 573
>gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO]
gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO]
Length = 653
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 197/412 (47%), Gaps = 49/412 (11%)
Query: 58 DCLACSGCITSAETVMLE-KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQV 115
+C+ C C+ T L + L++ ++ K VI ++P R ++ E + S L +
Sbjct: 186 ECVYCGQCVAHCPTAALTFRNDLEKLYQALSSDKIVIGMVAPAVRVAIQEELSLESDLAM 245
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+++ TFL+ G +FD + DL E +EF R + ++ LP +S C
Sbjct: 246 AERIATFLRMSGFNKVFDVAFGADLVAYEEAHEFYKRLSRQEK---------LPQFTSCC 296
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ Y E+ ++ +S+VKSPQQ +G+ IK +K+G P +I+ V+ MPC KK
Sbjct: 297 PAWVKYVEQYYPKFV-ENLSTVKSPQQALGSLIKKIYAKKMGLNPQDIFLVSFMPCTAKK 355
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EA RE+ G+ VD VLTT E+ +I+ +N + + P D+
Sbjct: 356 FEAEREEHA-------------GV----VDLVLTTKELSQMIKASGINIKQISPEPFDRP 398
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRH---AAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
G +G G G +V R ++ + ++EG ++ L+
Sbjct: 399 FGISSQGGLSFGKTGGVFGSVVSVLRDEIGISREEYDNLLEG---------VKIAKITLK 449
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
+GK+ ++ A+ +G N + I++K+ + + VEVMAC GC+ GGGQ P + +
Sbjct: 450 -DGKS-IRAAVIFGLANARKIMKKISSGEFNVDIVEVMACNYGCIGGGGQPYPNDSRMRQ 507
Query: 413 ELIKTL-ETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+ L ET+ ++ ++ P +N V+ LY E L E A+ +HT Y P
Sbjct: 508 KRAHILRETVGIKTLL--SPVENFYVQKLYQEDL---SDEHARHIIHTNYKP 554
>gi|291549870|emb|CBL26132.1| hydrogenases, Fe-only [Ruminococcus torques L2-14]
Length = 578
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 213/418 (50%), Gaps = 37/418 (8%)
Query: 53 KISLKDCLACSGCITSAETVML-EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI 110
KI+ C C CIT L E+ ++ S I +K K V+ ++P RA+ E G+
Sbjct: 182 KINEVSCSLCGQCITHCPVGALRERDDTEDVWSAIADKKKVVVAQVAPAVRAAWGEALGL 241
Query: 111 SPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
S + K+ LK +GV +FDTS S DLT++E NEF+ R+ + + P
Sbjct: 242 SREEATSGKIMDALKKIGVDYVFDTSFSADLTIMEEGNEFLQRFTKGELK-------LRP 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGWI + + Q +++P +S+ KSPQQ GA +K + Q +G P++IY V+VM
Sbjct: 295 MFTSCCPGWIRFIKSQY-PHLVPQLSTAKSPQQMFGAIMKTYFAQSIGVAPEDIYTVSVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E E F + ++D+VLTT E+ +I+ ++ + L++
Sbjct: 354 PCVAKKGERNMELFYGEYAGH------------DIDTVLTTRELTRMIRAAHIDPKILKD 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
D ++ G ++ G++GG E R A + G+ + FK +R+ F
Sbjct: 402 RECDPLMKEWSGAGVIF---GATGGVMEAALRSAHYLVTGRNPDPD-AFKIVRSPSFETD 457
Query: 350 ALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+E E G ++ A+ G N++ ++ ++ + Y FVEVMACP GC+ GGGQ
Sbjct: 458 VVEAEVQIGDATIRAAVVSGLGNVRKLLEAIEHGEVHYDFVEVMACPGGCVGGGGQ---- 513
Query: 407 PGQSPKELIKTL-ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P +EL T +Y +N + +N V LY+++LE+P S K+ +HT++
Sbjct: 514 PIHDGEELAHTRGANLYFLDKNAKIRFSHENQDVMKLYNDFLEKPLSHKSHMLLHTDH 571
>gi|336436392|ref|ZP_08616104.1| hypothetical protein HMPREF0988_01689 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336007257|gb|EGN37282.1| hypothetical protein HMPREF0988_01689 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 580
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 207/419 (49%), Gaps = 37/419 (8%)
Query: 53 KISLKDCLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGI 110
KI DC C CIT T L + + + + + K ++ ++P R + E G+
Sbjct: 182 KIEEADCSLCGQCITHCPTGALRARDDTAKVWKAIDDPNKITVVQVAPAVRTAWGEALGL 241
Query: 111 SPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169
S + K+T L+ LG +FDT+ S DLT++E +EF+ R + D P
Sbjct: 242 SREEATMGKITDSLRRLGFDYVFDTTFSADLTIMEEGSEFVKRLTSGELKDR-------P 294
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
M +S CPGW+ + + Q +++ +S+ KSPQQ GA +K + + +G P+ I V+VM
Sbjct: 295 MFTSCCPGWVRFIKSQY-PHLVKQLSTAKSPQQMFGAAMKTYFAKSIGVDPENICTVSVM 353
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 289
PC KK E E F E Y +VD VLTT E+ +I+ + L++
Sbjct: 354 PCTAKKGECNMELFY-------EEYAGH-----DVDLVLTTRELTRMIRSAHIAPSTLKD 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 349
D+++ + G ++G ++GG E R A + GK + FK +R + E
Sbjct: 402 EVCDELMQDGSGAGVIFG---ATGGVMEAALRSAYFLVTGKNPDAD-AFKNVRRTREDEF 457
Query: 350 ALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK 406
+ E G ++ A+ G N + ++ +++ + + FVEVMACP GC+ GGGQ
Sbjct: 458 TMTAEIPIGDITVRTAVVSGLANTRRLIERIEREEVHFDFVEVMACPGGCVGGGGQ---- 513
Query: 407 PGQSPKELIKTL-ETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
P +EL T + +Y + L +NP ++ LYD+++E P S KA +HT+++
Sbjct: 514 PIHDSEELALTRSKNLYFLDASNELRFSHENPDIQKLYDDFMEAPLSHKAHMLLHTDHN 572
>gi|307108270|gb|EFN56510.1| hypothetical protein CHLNCDRAFT_34957 [Chlorella variabilis]
Length = 677
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 205/422 (48%), Gaps = 42/422 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV- 115
C+ C C + ++E + L + NK K +++ +P R S+ E G++P V
Sbjct: 232 CIECGQCSSVCPVGAIVEHSEWRQVLDALENKQKVMVVQTAPSVRVSIGEELGLAPGTVE 291
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ ++LG +FD+ S DLT++E E + LPM +S C
Sbjct: 292 TGQMVAAQRALGFDYVFDSDFSADLTIMEEGEPGWGGGGWWVECAHGHAPGPLPMFTSCC 351
Query: 176 PGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 233
P WI EK SY ++P++SS KSPQ +GA +KH+ +K G +P+++ V +MPC
Sbjct: 352 PAWINLVEK---SYPELIPHLSSCKSPQMMMGAVVKHYWAKKKGLKPEDVCLVGIMPCTA 408
Query: 234 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 293
KK E R++F R+E + D V+TT E +++ K + +L+ D
Sbjct: 409 KKHETERKEF-----------RNENGAY-DCDYVITTREFGHMLRHKKIPMPSLKPEEFD 456
Query: 294 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE 352
L L+ G++GG E R A + G+ + LE + +R +E L
Sbjct: 457 NPLGEATGAAALF---GATGGVMEAAIRTAYEIAAGEPLP-KLEVEAVRGVKGVKEATLT 512
Query: 353 -----------VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
V GK ++ A+ G N ++++++++ + Y FVEVMACP GC+ GGG
Sbjct: 513 LPANDTTLKAGVAGKE-IRVAVASGIGNARHLLQRIQAGEAHYDFVEVMACPGGCIGGGG 571
Query: 402 QIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
Q K P ++K + IY +++ L +NP + +Y E+L QPG E + K +HT
Sbjct: 572 QPKT---HDPDAVLKRMGAIYQVDKSLALRKSHENPSIHKIYAEFLGQPGGELSHKLLHT 628
Query: 460 EY 461
Y
Sbjct: 629 HY 630
>gi|269119252|ref|YP_003307429.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
gi|268613130|gb|ACZ07498.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
Length = 587
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 210/420 (50%), Gaps = 30/420 (7%)
Query: 49 AEPVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASL 104
A +++ L D C C C+ T ++E+ + + LS + + K VI+ +P R +L
Sbjct: 185 APAMEMDLNDSVCTYCGQCVAVCPTGALVERDATWDVLSALADPTKTVIVQTAPAVRVAL 244
Query: 105 AEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 163
E FG +P V K+ + L+ LG +FDT + DLT++E +E + R + D
Sbjct: 245 GEEFGYAPGTSVTGKMVSSLRKLGFDRVFDTDFAADLTIMEEASELLDRLTRHLNGD--- 301
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
++ LP+L+S CP W+ + E +L S+ KSP Q A K+ ++L ++
Sbjct: 302 TSVKLPILTSCCPAWVKFFEHNFND-LLDVPSTAKSPMQMFSAVAKNVFAKELNVDRKDL 360
Query: 224 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 283
V+VMPC KK EA RE+F S++ + + D VL+T E+ LI+ +N
Sbjct: 361 IVVSVMPCLAKKYEAGREEF-----SKDGDF--------DTDIVLSTRELARLIKQANIN 407
Query: 284 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 343
F L++ D L G ++G +GG E R AA GK +E +++++ +R
Sbjct: 408 FNILKDEEFDNPLGESTGAGVIFG---RTGGVIEAALRTAADWYTGKSLE-NIDYEAVRG 463
Query: 344 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403
+ A G LK + +G + ++ +V+ K Y +E+MAC GC+ GGGQ
Sbjct: 464 FEGVRSADVKVGDLDLKIGIAHGLGEARKLLEEVREGKSMYHAIEIMACKGGCIGGGGQ- 522
Query: 404 KPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
P + L K E I +E+ + +NP ++ LY+E+ ++P S +A + +HT+Y
Sbjct: 523 -PYHHGNTSILRKRTEAIKIEDESKAIRKSHENPYIKKLYNEYFKEPMSHQAHELLHTKY 581
>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
Length = 1206
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 213/434 (49%), Gaps = 44/434 (10%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
+ + +C+ C CI T + EK + L IN + ++ ++P R ++AE FGI P
Sbjct: 205 LDVSECIQCGQCINRCPTGAITEKSEIRPVLDAINIQQRLVFQMAPSIRVAVAEEFGIKP 264
Query: 113 LQVFKK--LTTFLKSLGVKS-IFDTSCSRDLTLIEACNEFIARYKQSQES----DDERSN 165
+ K + T L+ LG + DT+ S DLT+IE +E I R ++ +
Sbjct: 265 GEKILKNEIATALRKLGSNVFVLDTNFSADLTIIEEGHELIERLYRNVTGKKLLGGDHMP 324
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG-FRPDEIY 224
LPML+S CPGWI + EK +L +S+ KSPQ +GA IK + + + P +I
Sbjct: 325 IDLPMLTSCCPGWIMFIEKNYPD-LLNNLSTCKSPQGMLGALIKGYWAKNIKKMDPKDIV 383
Query: 225 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 284
V++MPC KK E R +E Y+D VD +LTT E+ +++ ++
Sbjct: 384 SVSIMPCTAKKAEKERPQL-----RGDEGYKD-------VDYILTTRELAKMLKQSNIDL 431
Query: 285 EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRN 343
+E +P DK+++ ++GV +GG E R A + + G+ + +L + +R
Sbjct: 432 AKMEPTPFDKVMSEGTGAAVIFGV---TGGVMEAALRTANEVITGREVPFKNLNIEAVRG 488
Query: 344 SD-FREVALEVEG---------KTLLKFALCYGFQNLQNIVRKVKMRK-----CDYQFVE 388
+ RE +++E +K A+ +G N + ++ +K K + FVE
Sbjct: 489 MEGIREAGIKLENVLDKYKAFEGVTVKVAIAHGPNNARKVMDIIKQAKESGKPAPWHFVE 548
Query: 389 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQ 447
VMACP GC+ GGGQ PKP +T T + ++ L NP ++++Y+ +L++
Sbjct: 549 VMACPGGCIGGGGQ--PKPTNLEIRQARTQLTFKEDMDLPLRKSHDNPEIKAIYENYLKE 606
Query: 448 PGSEKAKKHVHTEY 461
P + ++HT Y
Sbjct: 607 PLGHNSHHYLHTTY 620
>gi|357055534|ref|ZP_09116602.1| hypothetical protein HMPREF9467_03574 [Clostridium clostridioforme
2_1_49FAA]
gi|355382653|gb|EHG29750.1| hypothetical protein HMPREF9467_03574 [Clostridium clostridioforme
2_1_49FAA]
Length = 451
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 197/420 (46%), Gaps = 45/420 (10%)
Query: 59 CLACSGCIT-SAETVMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ-V 115
C+ C C E + K E + IN K V+ S +P R L E FG P V
Sbjct: 55 CIHCGQCAAVCPERAIRGKSHWREVVRAINDPQKIVVFSTAPSVRVGLGECFGGRPGDFV 114
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
++ + L+ LG + D + S DLT++E EF+ R+ + LP +S C
Sbjct: 115 EGRMVSALRELGADYVLDVAFSADLTIMEEGTEFLRRFLTG--------SHPLPQFTSCC 166
Query: 176 PGWICYAE----KQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 231
P W+ Y E +++G +SS KSP GA IK + ++ G P I +V V PC
Sbjct: 167 PAWVKYVETFHPERIGC-----LSSAKSPISMQGALIKTYFAREQGIDPGRIVNVAVAPC 221
Query: 232 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV---DSVLTTGEVLDLIQLKAVNFEALE 288
KK E +RE+ Y+ IP + D VLTT E+ + I + F L+
Sbjct: 222 TAKKFEISREELC-----SSGIYQG----IPGLMDNDYVLTTRELAEWITESGIEFYGLD 272
Query: 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRNSD-F 346
S D ++ G ++ G++GG E R A + GK ++ L+++ +R D
Sbjct: 273 PSSFDSLMGEGSGAGVIF---GNTGGVMEAALRMAYSVVSGKEPMDLLLKYRPVRGLDQV 329
Query: 347 REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ---- 402
+E + + G+ ++ A+ YG + + ++ + Y FVEVM CP GC++GGGQ
Sbjct: 330 KETVVSLGGRD-VRAAVIYGTRAAEQLIGTGNIDS--YDFVEVMTCPGGCISGGGQPDNG 386
Query: 403 IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
+ P P + E IK+L E M+ N ++ LY+ +L +P E A+ +HT YH
Sbjct: 387 VLPVPDRLRMERIKSLYRAD-EQRMVRSSLDNREIKRLYERFLGEPMGELAQTLLHTCYH 445
>gi|333980350|ref|YP_004518295.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823831|gb|AEG16494.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 676
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 209/432 (48%), Gaps = 42/432 (9%)
Query: 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE-KQSLDEFLSNI-NKGKAVIIS 95
K QV+T+ + + V C++C C+ T L K +D+ I + K V++
Sbjct: 176 KTQVTTAFGKPLQEVA-----CVSCGQCVAVCPTGALTVKSEVDKVWDAIHDPDKVVVVQ 230
Query: 96 LSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154
++P R ++ E FG+ P + ++ L+ +G +FDT + D+T IE E + R +
Sbjct: 231 VAPAVRVAIGEEFGLLPGEKATGQMVAALRKIGFDRVFDTLFTADMTTIEEGMELLGRLE 290
Query: 155 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 214
+ LP+ +S CP W+ YAE Q + +L +S+ +SPQQ G+ +K H +
Sbjct: 291 KG---------GRLPLFTSCCPAWVKYAE-QFHADLLENLSTCRSPQQMFGSLVKKHYAR 340
Query: 215 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 274
++G P+++ V+VMPC KK EA R +F +P+VD VLTT E+
Sbjct: 341 EIGRSPEQVVCVSVMPCTAKKFEARRPEFTTG-------------GVPDVDFVLTTMELA 387
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH-AAKTLFGKVIE 333
+I+ + F LE D L +Y G+SGG E+V R AA+ G V
Sbjct: 388 QMIKEAGIVFNELEPEVFDNPLGMGSGAAVIY---GASGGVMESVVRFVAAQQSPGDV-- 442
Query: 334 GHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392
G ++F +R +E LE+ G+ LK A+ G N + ++ ++K + Y VEVMAC
Sbjct: 443 GRVDFYPVRGIQGIKEAELEIGGQN-LKLAVVNGLANAEKLINRIKSGEAFYHAVEVMAC 501
Query: 393 PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV-MLADPFKNPLVRSLYDEWLEQPGSE 451
P GCL GGGQ P P + L + L+ L P N V + W P +
Sbjct: 502 PGGCLGGGGQ--PYPNNTASRLGRMKGLYALDRAEQLHRPQDNIFVTRALERWFGGPANA 559
Query: 452 KAKKHVHTEYHP 463
+ +HT Y+P
Sbjct: 560 NTHQALHTRYYP 571
>gi|189467141|ref|ZP_03015926.1| hypothetical protein BACINT_03525 [Bacteroides intestinalis DSM
17393]
gi|224535655|ref|ZP_03676194.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus
DSM 14838]
gi|189435405|gb|EDV04390.1| hydrogenase, Fe-only [Bacteroides intestinalis DSM 17393]
gi|224522728|gb|EEF91833.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus
DSM 14838]
Length = 588
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/414 (28%), Positives = 205/414 (49%), Gaps = 30/414 (7%)
Query: 54 ISLKDCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI- 110
+S +C C C+ + E+ + L ++ N K VI+ +P RA+L E FG+
Sbjct: 193 MSDSECTYCGQCVAVCPVGALTERDHTNRLLLDLENPDKVVIVQTAPAVRAALGEEFGLP 252
Query: 111 SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ V K+ L+ LG +FDT + DLT++E E + R + D + LP+
Sbjct: 253 AGTLVTGKMVYALRELGFDYVFDTDFAADLTIMEEGAEILNRLTRYMNGD---KSVRLPI 309
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
L+S CP W+ + E +L S+ +SPQQ G+ K +K+G +++ V++MP
Sbjct: 310 LTSCCPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKTFWAEKMGIPREKLVVVSIMP 368
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R +F + D P+VD ++T E+ LI+ V F L +
Sbjct: 369 CLAKKYECDRNEF--KTDGS-----------PDVDYSISTRELARLIRRANVGFTLLTDK 415
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREV 349
D + G ++G ++GG E R + G+ +E ++ F+ +R + R
Sbjct: 416 EFDHPMGASTGAGVIFG---TTGGVMEAALRSVYEIYTGRTLE-NVNFEQVRGLAGVRRA 471
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
++++G L K + +G N + ++ ++ + +Y +E+MACP GC+ GGGQ P
Sbjct: 472 TIDLDGFEL-KVGIAHGLGNARQLLEDIRHGRNEYHVIEIMACPGGCIGGGGQ--PLHHG 528
Query: 410 SPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
+ + L +Y E+ L +NP +++LY+E+L +P SE A++ +HT Y
Sbjct: 529 NSEVLYARANALYREDAQKPLRKSHENPYIKTLYEEYLGKPLSETAERLLHTHY 582
>gi|158258982|dbj|BAF82035.1| Fe-hydrogenase [Pseudotrichonympha grassii]
Length = 550
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 198/415 (47%), Gaps = 54/415 (13%)
Query: 54 ISLKDCLACSGCIT-SAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP 112
++++DC++C C+T T M EK+ + + L + GK V I +P R SLAE FG P
Sbjct: 176 VNVEDCISCGACVTFCPTTAMREKREIPKLLHAFSVGKIVAIQFAPAVRVSLAELFG-KP 234
Query: 113 LQVF--KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ K+ + + +G + +FDT+ DLT+ E NEF+ R K+ PM
Sbjct: 235 VGTICTGKMISAARKMGFRYVFDTTFGADLTVYEEANEFLTREKR-------------PM 281
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPG++ + E+ ++PY+++ KSP GA IK+H K+ + I+ V V P
Sbjct: 282 FTSCCPGFVNFIERYHPD-LIPYLTTTKSPMAITGAVIKNHFAMKMCLK--NIFVVFVGP 338
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E R + +VD LTT E ++I+ +++++L +
Sbjct: 339 CTAKKDEICRHQI-----------------MNDVDCALTTREFGEMIENYEIDWDSLNDK 381
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH--AAKTLFGKVIEGHLEFKTIRNSDFRE 348
+ V EG G+SGG A V ++ A + +V+ ++ T +E
Sbjct: 382 ---EEFDTVAGEGWTVEF-GASGGVATGVMKYLCAKYNVPYEVVFENVPLMT----GLKE 433
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
+ ++GK L KFA+C G N++ Y F+EVM+CP GC+NGGGQ K
Sbjct: 434 TTITIDGKEL-KFAICSGISTAANLIDTELYLT--YDFIEVMSCPLGCVNGGGQPKISKY 490
Query: 409 QSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
K + I+ N + D N + +Y ++L PG A K +HT +
Sbjct: 491 AQIHNRSKAIRNIFKNANKTVLD---NSAMEYVYTDYLGDPGVGLAHKLLHTSFQ 542
>gi|410729200|ref|ZP_11367281.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410596042|gb|EKQ50729.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 586
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 205/415 (49%), Gaps = 36/415 (8%)
Query: 54 ISLKDCLACSGCITSAETVMLEKQ--SLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
I DC C CIT L ++ + F + + K ++ ++P RA+ E FG++
Sbjct: 183 IENSDCALCGQCITHCPVGALRERDDTQKAFDALADSDKITVVQIAPAVRAAWGESFGLT 242
Query: 112 PLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
+ ++L L+ +G IFDT+ S DLT++E +EF+ E + + N+ PM
Sbjct: 243 REEATVERLVAALRKIGFNYIFDTNFSADLTIMEEGSEFL-------EKINNKENNVFPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CPGW+ + + Q ++ +S+ KSPQQ GA K + + L P I+ V++MP
Sbjct: 296 FTSCCPGWVRFLKSQYPD-MVNQLSTAKSPQQMFGAVAKTYYAKILNVNPSNIFCVSIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
C KK E S+ D G +VD VLTT E+ +I+ + + + L+E
Sbjct: 355 CIAKKHE-----------SEISVMNDAGAG-QDVDLVLTTREIDRMIRAEHIIPQNLKEE 402
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREV 349
D L G ++G ++GG E R A G + FK IR + +RE
Sbjct: 403 AFDMPLGVGSGAGVIFG---ATGGVMEAALRSAYFLTTGTNPDPD-AFKEIRGMNGWREA 458
Query: 350 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 409
E++G ++ K A+ G N + ++++++ K Y FVEVMACP GC GGGQ P +
Sbjct: 459 TFEIKGISI-KVAIVSGLGNTRRLIKEIRKGKVSYDFVEVMACPGGCSGGGGQ----PIK 513
Query: 410 SPKELIKTLETIYLE---NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
EL + E L +NP V LY++++E+P S KA K +HT++
Sbjct: 514 DGAELAEVRAYNLYELDKKSTLRFSHENPSVLKLYEDFMERPLSHKAHKLLHTDH 568
>gi|167745819|ref|ZP_02417946.1| hypothetical protein ANACAC_00513 [Anaerostipes caccae DSM 14662]
gi|167654850|gb|EDR98979.1| rubredoxin [Anaerostipes caccae DSM 14662]
Length = 650
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 210/418 (50%), Gaps = 41/418 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
+C C+ C + T E Q + E + + K VI+S SP RA+L E FG + V
Sbjct: 60 NCGQCANVCPVESITETYEYQQVREAVKDPEK--IVIVSTSPSVRAALGEEFGTEEGMFV 117
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L++LG + DT+ S DLT++E +E I R + LP +S C
Sbjct: 118 QGKMVALLRALGADYVLDTNFSADLTIMEEASELIERIT--------KGTKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE +L +IS+ KSP G TIK + + +G P++I +V + PC KK
Sbjct: 170 PAWVKFAEIYYPE-LLDHISTAKSPIGMQGPTIKTYFAKLMGIDPEKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGL-----EIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
E RE+ +D G+ ++ ++D V+TT E + ++F LE+S
Sbjct: 229 FEIRREEM-----------KDAGISYGKEDMRDMDYVITTREAALWANEEKIDFMGLEDS 277
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSD-FRE 348
DK + G ++G +SGG E R A + + K + + K +R + +E
Sbjct: 278 DFDKFMGEGSGAGVIFG---NSGGVMEAALRTAYEFITKEKAPDILYDLKPVRGMEGVKE 334
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-- 406
+L++ G + A+ YG N + ++ KVK Y F+EVM CP GC+ GGGQ K K
Sbjct: 335 ASLDI-GDLTVNVAVVYGTGNARKMIDKVKSSDKQYHFIEVMTCPGGCIGGGGQPKDKEF 393
Query: 407 PGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
GQ +E K +E++Y + + + +N ++ LY+E+ +P SE A++ +HT YH
Sbjct: 394 KGQIIQE--KRIESLYRRDSGMQIRASHENKQIKKLYEEFYGEPLSELAEQMLHTMYH 449
>gi|37911261|gb|AAR04931.1| iron-hydrogenase HydA2 [Chlamydomonas reinhardtii]
Length = 505
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 212/452 (46%), Gaps = 72/452 (15%)
Query: 67 TSAETVMLEKQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQVFK-KLTTFLK 124
T+ + V K +L+E + G+ V+I+ ++P R ++AE FG++P V KL L+
Sbjct: 64 TATDAVPHWKLALEELDKPKDGGRKVLIAQVAPAVRVAIAESFGLAPGAVSPGKLAAGLR 123
Query: 125 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 184
+LG +FDT + DLT++E E + R K+ E+ S+ LPM +S CPGW+ EK
Sbjct: 124 ALGFDQVFDTLFAADLTIMEEGTELLHRLKEHLEAH-PHSDEPLPMFTSCCPGWVAMMEK 182
Query: 185 QLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE- 241
SY ++P++SS KSPQ +GA +K ++ +K G +I V+VMPC K+ EA RE
Sbjct: 183 ---SYPELIPFVSSCKSPQMMMGAMVKTYLSEKQGIPAKDIVMVSVMPCVRKQGEADREW 239
Query: 242 -----------DFVFQLDSQEETYRDEGLEIPEV-----DSVL-----------TTGEVL 274
D V +++ G+ +PE+ D L TTG V+
Sbjct: 240 FCVSEPGVRDVDHVITTAELGNIFKERGIILPELPDSDWDQPLGLGSGAGVLFGTTGGVM 299
Query: 275 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 334
+ A +E + + PL ++ N+ + L G+ +S A + F +++
Sbjct: 300 EAAVRTA--YEIVTKEPLPRL--NLSEVRGLDGIKEAS-----VTLVPAPGSKFAELVAA 350
Query: 335 HLEFKTIRNSDFREVAL--------------------EVEGKTLLKFALCYGFQNLQNIV 374
L K + A + +G L+ A+ G N + ++
Sbjct: 351 RLAHKVEEAAAAEAAAAVEGAVKPPIAYDGGQGFSTDDGKGGLKLRVAVANGLGNAKKLI 410
Query: 375 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL---ENVMLADP 431
K+ + Y FVE+MACP+GC+ GGGQ P + K++ + + E L
Sbjct: 411 GKMVSGEAKYDFVEIMACPAGCVGGGGQ----PRSTDKQITQKRQAALYDLDERNTLRRS 466
Query: 432 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 463
+N V LY E+L +P S +A + +HT Y P
Sbjct: 467 HENEAVNQLYKEFLGEPLSHRAHELLHTHYVP 498
>gi|429859924|gb|ELA34680.1| nuclear prelamin a recognition factor [Colletotrichum
gloeosporioides Nara gc5]
Length = 441
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 49/279 (17%)
Query: 164 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 223
S + P+L+S+CPGW+CYAEK Y+LP++S VKSPQ +G +K + +KLG P I
Sbjct: 59 SAPTKPILTSSCPGWVCYAEKTH-PYVLPHLSRVKSPQALMGTLLKTTLSKKLGIPPSRI 117
Query: 224 YHVTVMPCYDKKLEAARE---DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 280
+H+ VMPC+DKKLEA+RE D V+ D + G + +VD V+T+ EVL L + +
Sbjct: 118 WHLAVMPCFDKKLEASREELTDTVWAGDGK------PGRGVRDVDCVITSKEVLMLAESR 171
Query: 281 AVNFEALEES------------PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 328
NF L S LDK L AGSSGG +T+
Sbjct: 172 GFNFFDLPRSNPNLQRATFPDARLDKFLFPRRAAHRSSQAAGSSGGN----LYFTLQTVA 227
Query: 329 GKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK------ 381
K ++ RN+D E + G + K A YGF+N+QN+VRK+K +
Sbjct: 228 SKHPNSQIQTIRGRNADVTEYIVASSTGDPIFKAARYYGFRNIQNLVRKLKPARPSRLPG 287
Query: 382 ----------------CDYQFVEVMACPSGCLNGGGQIK 404
+Y +VEVMACP GC NGGGQIK
Sbjct: 288 GKAFGAARRPNGKPAGLEYAYVEVMACPGGCTNGGGQIK 326
>gi|123420195|ref|XP_001305709.1| 64kDa iron hydrogenase [Trichomonas vaginalis G3]
gi|121887244|gb|EAX92779.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
Length = 590
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 45/410 (10%)
Query: 64 GCITSAETVMLEKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQVFK-KLTT 121
G IT V KQ+LD LSN KGK + +I ++P R +L+E FG V K+ +
Sbjct: 214 GAITEKSQV---KQALD-ILSN--KGKKISVIQVAPAVRVALSEAFGYKEGSVTTGKMVS 267
Query: 122 FLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICY 181
LK+LG ++DT+ S DLT++E E + R K N+ PM +S CP W+ Y
Sbjct: 268 ALKALGFDYVYDTNYSADLTIVEEAGELVQRLKNP--------NAVFPMFTSCCPAWVNY 319
Query: 182 AEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE 241
E+ +I P +SS +SPQ + + +K+++ + L +++ + ++MPC KK E R
Sbjct: 320 VEQSAPDFI-PNLSSCRSPQGMLSSLVKNYLPKVLNIPVEDVLNFSIMPCTAKKDEIERP 378
Query: 242 DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD 301
+ + D +ET D VLT E++++I+L ++F L ++P D +
Sbjct: 379 ELRTK-DGHKET-----------DMVLTVRELVEMIKLSGIDFNNLPDTPFDSIFGFGSG 426
Query: 302 EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLK 360
G ++ ++GG E R A + + GK + ++ +R D +A L+++G T LK
Sbjct: 427 AGQIFA---ATGGVMEAASRTAFEAVTGKKLT-NVNIYPVRGMDGTRIAELDLDG-TKLK 481
Query: 361 FALCYGFQNLQNIVRKVKMRK---CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT 417
A+C+G N + +++ + D +FVEVMACP GC+ GGG +PK S L
Sbjct: 482 IAVCHGIANTAKFLDRLRAKDPQLADLKFVEVMACPGGCVCGGGTPQPKNMMS---LDNR 538
Query: 418 LETIYLENVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HP 463
L IY + + +NPL++ +Y E+L +P A + +HT Y HP
Sbjct: 539 LAAIYNIDAKMECRKSHENPLIKGIYKEFLGEPNGHLAHELLHTHYKHHP 588
>gi|260655145|ref|ZP_05860633.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi
E3_33 E1]
gi|424844979|ref|ZP_18269590.1| hydrogenase, Fe-only [Jonquetella anthropi DSM 22815]
gi|260630067|gb|EEX48261.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi
E3_33 E1]
gi|363986417|gb|EHM13247.1| hydrogenase, Fe-only [Jonquetella anthropi DSM 22815]
Length = 577
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 194/410 (47%), Gaps = 38/410 (9%)
Query: 59 CLACSGCITSAETVML-EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQV- 115
C+ C CIT L E+ + + I+ K V++ ++P R + E FG+ P +
Sbjct: 188 CVLCGQCITHCPVGALHERDDTQKLMDAIDDPDKIVLVQIAPAIRTAWCEEFGMKPEEAT 247
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
+L + L+ +G +FDT+ S DLT++E +EF+ R + + PM +S C
Sbjct: 248 VNRLASALRIIGFDYVFDTNFSADLTIMEESSEFVERLTHADQF-------KFPMFTSCC 300
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + + YI P +S+ KSPQQ GA K Q LG P I+ V+VMPC KK
Sbjct: 301 PAWVRFVKANWPKYI-PQLSTAKSPQQMFGAIAKSWYPQLLGVDPKRIFSVSVMPCLAKK 359
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
E A Q+ VD +T E+ LI+ ++ LE+ LD
Sbjct: 360 AECALPTMNSAGAGQD------------VDLAITNREITRLIRAHQIDPTDLEDEQLDMP 407
Query: 296 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE 354
L G ++GV +GG E R A + GK FK +R ++E E+
Sbjct: 408 LGIGSGAGAIFGV---TGGVMEAALRSAHYFVTGKNASPET-FKAVRGQQGWKEAEFEI- 462
Query: 355 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 414
G T LK A+ G N ++ +++ + Y FVEVMACP GC+ GGGQ P + KE+
Sbjct: 463 GGTKLKVAVVNGLSNANQLITELEKGRVHYDFVEVMACPGGCVGGGGQ----PIHAQKEM 518
Query: 415 IKTLETIYLENVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTE 460
+ L N+ P++ NP + Y +L +P SE+A +HT+
Sbjct: 519 APDRAPV-LYNIDKKLPWRYSHANPSIIECYKSYLGKPLSERAHHLLHTD 567
>gi|332652330|ref|ZP_08418075.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae
bacterium D16]
gi|332517476|gb|EGJ47079.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae
bacterium D16]
Length = 564
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 192/414 (46%), Gaps = 40/414 (9%)
Query: 54 ISLKDCLACSGCITSAET--VMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS 111
+S C++C C T + + Q + + + K V++ ++P R ++ E FG+
Sbjct: 185 LSETHCISCGQCAAVCPTGAITIYNQIGKAWRAIHDPQKRVVVQIAPAVRVAVGEAFGLP 244
Query: 112 PLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 170
Q V +L T LK +GV ++DT+ D T IE EF+AR ++ PM
Sbjct: 245 AGQNVLDQLVTALKFMGVDEVYDTTFGADFTTIEESQEFLARLEK---------GGPFPM 295
Query: 171 LSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMP 230
+S CP W+ Y E + Y L IS+ KSP + A I+ H +K +H+ +MP
Sbjct: 296 FTSCCPAWVKYLENENPKY-LKNISTCKSPMEMFAAIIREHYQKKDAEDGRSTFHIAIMP 354
Query: 231 CYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE-E 289
C KK+EAAR F P+VD VLTT E++++I+ + +E E
Sbjct: 355 CTAKKMEAARPQFYHNGK-------------PDVDVVLTTQEIINMIKESGIQLPQMELE 401
Query: 290 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFRE 348
SP D +YG SSGG AE+V R+ + L++ +R N RE
Sbjct: 402 SP-DLPFGLGSGAAVIYG---SSGGVAESVVRYCLPDKSKNTLR-ELQYSPLRGNEAIRE 456
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 408
++V G+ +K A+ +G N Q +++++ Y VEVM CPSGC+ G GQ P
Sbjct: 457 ATVQV-GEREIKLAVVHGLINAQKLLKEIDAGTAYYDLVEVMTCPSGCVGGAGQ----PY 511
Query: 409 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
++ +Y + A PFK + ++L E+ + +HT Y
Sbjct: 512 GLKQKKQDRAAGLYAAD--RAAPFKRAEKNPVVLDFLNNYTPEQRHELLHTSYQ 563
>gi|423306449|ref|ZP_17284448.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T00C23]
gi|423308962|ref|ZP_17286952.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T12C37]
gi|392678629|gb|EIY72034.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T00C23]
gi|392686179|gb|EIY79486.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T12C37]
Length = 588
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ N K VI+ +P RA+L E FG+ P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDHTNRLLEDLANPDKVVIVQTAPAVRAALGEEFGLPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E E + R + + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGAEILNRLTRYLQGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKTFWAKKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E RE+F + D P+VD ++T E+ LI+ + F L + D
Sbjct: 373 KYECDREEF--KTDGN-----------PDVDYSISTRELARLIRRANIGFTLLTDKEFDL 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R + G+ ++ ++ F+ +R + R +++
Sbjct: 420 PMGASTGAGVIFG---TTGGVMEAALRSVYEIYTGRTLD-NVNFEQVRGLAGVRRATIDL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
+G L K + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P +
Sbjct: 476 DGFEL-KVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDV 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L +NP +++LY+E+L +P SE A+ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHENPYIKTLYEEYLGKPLSETAEHLLHTHY 582
>gi|374997756|ref|YP_004973255.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
gi|357216122|gb|AET70740.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
Length = 580
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 201/411 (48%), Gaps = 39/411 (9%)
Query: 59 CLACSGCITSAET-VMLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVF 116
C C C+ T ++E +D+ +N + VI+ +P R +L E FG+ P +
Sbjct: 195 CTFCGQCVAVCPTGALMELDQVDKVWKALNDPNRFVIVETAPAVRVALGEGFGLEPGTIV 254
Query: 117 K-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L+ LG +FDT D+T++E E I R + LP+L+S C
Sbjct: 255 TGKMVAALRRLGFDRVFDTEFGADVTIMEEATELIHRLEHG---------GRLPILTSCC 305
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ + E Q +L S+ KSP + +G K + + G P +I V+VMPC KK
Sbjct: 306 PAWVKFFEHQFPD-LLDIPSTCKSPHEMLGVLSKSYYAEAYGIDPKKITVVSVMPCIAKK 364
Query: 236 LEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM 295
EAAR + Q+ P+VD V+TT E+ +I+ ++FE L++ D
Sbjct: 365 YEAARPEL-----GQDPV-------TPDVDIVITTRELSRMIREAGIHFEHLKDEEFDHP 412
Query: 296 LTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 352
L G G A G++GG E R A + L G +E ++EF+ +R + + A+
Sbjct: 413 L------GESTGAAVVFGTTGGVIEAALRTAYEWLTGHPLE-NVEFEPLRGMEGIKEAVI 465
Query: 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPK 412
G+ K A+ +G N + I+ K++ + Y +E+MACP GC+ GGGQ P + +
Sbjct: 466 PIGERDFKIAVTHGLGNARTILEKIQAGESHYDAIEIMACPGGCIGGGGQ--PYHHGNLE 523
Query: 413 ELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L IY E+ L +NP V LY+E++ +P +KA + +HT +
Sbjct: 524 ILQARANAIYQEDRSKPLRKSHENPAVIKLYNEYIGKPYGDKAHELLHTSF 574
>gi|225175926|ref|ZP_03729918.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1]
gi|225168514|gb|EEG77316.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1]
Length = 574
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 206/424 (48%), Gaps = 45/424 (10%)
Query: 51 PVKISLKD--CLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAE 106
P +L D C+ C C T+ + EK +D+ I + K V++ +P + S+AE
Sbjct: 181 PPGYNLNDSVCVQCGQCATTCPVGAIYEKSVVDDVWQAIADPNKHVVVQAAPAVQVSIAE 240
Query: 107 HFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN 165
G+ P + K+ L+ LG +F T + DLT++E E + R K +N
Sbjct: 241 ALGLEPGTPMAGKMAAALRRLGFDRVFTTEFTADLTILEEGTELLGRLK---------NN 291
Query: 166 SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225
+LP+++S PGWI + E +L +S+ KSPQQ GA K + +K G P +IY
Sbjct: 292 GALPLITSCSPGWIKFIEHNFPE-LLENLSTCKSPQQMFGALAKTYYAEKNGIDPSKIYS 350
Query: 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE 285
V++MPC KK EAAR + YRD VD+V+TT E+ +I +++
Sbjct: 351 VSLMPCTAKKYEAARPEM------NSSGYRD-------VDAVITTRELARMIHEASLDIN 397
Query: 286 ALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR 342
L + D G L G A G++GG AE R + + G+ + +E++ +R
Sbjct: 398 KLADEQFDAPF------GMLTGAATIFGTTGGVAEAALRTLYELVNGQEMP-TMEYEPVR 450
Query: 343 NSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 401
D +E ++ + G T +K A+ G N + ++ +VK + +Y F+E+MA G GGG
Sbjct: 451 GLDGIKESSVNL-GGTDVKIAVTSGLANAREVLNRVKNGEAEYHFIEIMA-CPGGCIGGG 508
Query: 402 QIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 459
K G + + +IY + + +N V+ LY E+L +P S KA +HT
Sbjct: 509 GQPIKNGSDNR--VARAASIYKVDAANRVRKSHENSAVKQLYKEYLGEPNSHKAHDLLHT 566
Query: 460 EYHP 463
Y P
Sbjct: 567 HYTP 570
>gi|29345534|ref|NP_809037.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|383123880|ref|ZP_09944550.1| hydrogenase, Fe-only [Bacteroides sp. 1_1_6]
gi|29337426|gb|AAO75231.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|251838889|gb|EES66974.1| hydrogenase, Fe-only [Bacteroides sp. 1_1_6]
Length = 588
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 203/410 (49%), Gaps = 30/410 (7%)
Query: 58 DCLACSGCITSAET-VMLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQ 114
+C C C+ + E+ + L ++ + K VI+ +P RA+L E FG+ P
Sbjct: 197 ECTYCGQCVAVCPVGALTERDYTNRLLDDLADPDKIVIVQTAPAVRAALGEEFGLPPGTL 256
Query: 115 VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSA 174
V K+ L+ LG +FDT + DLT++E +E + R + + D + LP+L+S
Sbjct: 257 VTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLDGD---KSVRLPILTSC 313
Query: 175 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 234
CP W+ + E +L S+ +SPQQ G+ K + +K+G +++ V++MPC K
Sbjct: 314 CPAWVNFFEHHFPD-MLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAK 372
Query: 235 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 294
K E R++F +P+VD ++T E+ LI+ + F + +SP D
Sbjct: 373 KYECDRDEFKVN-------------GVPDVDYSISTRELARLIKRANIGFTLVLDSPFDN 419
Query: 295 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEV 353
+ G ++G ++GG E R + G+ ++ ++ F+ +R S R +++
Sbjct: 420 PMGESTGAGVIFG---TTGGVMEAALRSVYEIYTGQPLK-NVNFEQVRGLSGVRRATIDL 475
Query: 354 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE 413
G L K + +G N ++++ ++ +Y +E+MACP GC+ GGGQ P +
Sbjct: 476 NGFEL-KVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDV 532
Query: 414 LIKTLETIYLE--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461
L +Y E N L NP ++ LY+E+L +P EK++ +HT Y
Sbjct: 533 LYARANALYREDANKPLRKSHDNPYIQKLYEEYLGKPLGEKSEMLLHTHY 582
>gi|323141449|ref|ZP_08076338.1| rubredoxin [Phascolarctobacterium succinatutens YIT 12067]
gi|322414029|gb|EFY04859.1| rubredoxin [Phascolarctobacterium succinatutens YIT 12067]
Length = 641
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 30/383 (7%)
Query: 87 NKGKAVIISLSPQSRASLAEHFGISPLQVF--KKLTTFLKSLGVKSIFDTSCSRDLTLIE 144
+K K VI+S SP R +L E FG+ P F K+ L++LGV + DT+ + DLT++E
Sbjct: 46 DKDKIVIVSTSPSVRVALGEEFGM-PKGAFVQGKMVALLRALGVDYVLDTNFAADLTIVE 104
Query: 145 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 204
+E +AR K ++ LP +S CP W+ +AE +LP++S+ KSP
Sbjct: 105 EASELLARIKGE-------TDKPLPQFTSCCPAWVKFAETYYPE-LLPHVSTAKSPIGMQ 156
Query: 205 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-EIPE 263
G TIK + QK+G P +I +V + PC KK E RE+ + G+ E+ +
Sbjct: 157 GPTIKTYFAQKMGIDPRKIVNVALTPCTAKKFEIRREEM-------NAAGQKLGIAELRD 209
Query: 264 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 323
+D+V+TT E+ + ++F +LE+S DK + G ++ G++GG E R A
Sbjct: 210 MDNVITTRELALWAKEAGIDFTSLEDSDFDKFMGEASGAGVIF---GNTGGVMEAALRTA 266
Query: 324 AKTLFGKVIEGH-LEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 381
L G+ L+ + +R D RE ++E+ G+ ++ A+ +G +N++ ++ +
Sbjct: 267 YAYLTGEQPPKEILKLEPVRGYDGLREASVEIAGR-VINVAVVHGTENVRKLIAGGIEK- 324
Query: 382 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRS 439
Y F+EVM CP GC+ GGGQ K + +E +Y + + L +N ++
Sbjct: 325 --YHFIEVMTCPGGCIGGGGQPKDFAYDADAARKARIEGLYERDAEMELHLSHENKEIQQ 382
Query: 440 LYDEWLEQPGSEKAKKHVHTEYH 462
LY E+ + P S+ A+ +HT Y
Sbjct: 383 LYQEFYDTPLSDMAEAMLHTAYQ 405
>gi|146076763|ref|XP_001462996.1| putative hydrogenase [Leishmania infantum JPCM5]
gi|398010024|ref|XP_003858210.1| hydrogenase, putative [Leishmania donovani]
gi|134067078|emb|CAM65342.1| putative hydrogenase [Leishmania infantum JPCM5]
gi|322496416|emb|CBZ31486.1| hydrogenase, putative [Leishmania donovani]
Length = 633
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 143/530 (26%), Positives = 215/530 (40%), Gaps = 159/530 (30%)
Query: 16 DFIAPSQNC-------------------------VVSLKKATFKNPDKPQVSTSSKQQAE 50
D+IAPS C VV +K+ P P ++ ++ Q A+
Sbjct: 2 DYIAPSSACIKPTLISSGGIHAVGPADPTASASGVVGMKRGGNAPPLGPGIAAAA-QHAD 60
Query: 51 PVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNI---------------NKGKAVIIS 95
VKI+L+DCLACSGC+T+AETV++ QS E +S + + + ++S
Sbjct: 61 VVKITLQDCLACSGCVTTAETVLVNAQSRHEIVSALLTSPASTSSSTTGTGSVSRPRLVS 120
Query: 96 LSPQSRASLAEHFGISPLQVFKKLTTF----LKSLGVKSIFDTSCS------RDLTLIEA 145
+S QS ASLA H +S V++ + F L + G++ + RD E
Sbjct: 121 ISSQSCASLAAHLHMSMAAVYELVAGFMRATLTTAGLQEAARNAEIAAAESPRDAMKNEE 180
Query: 146 CN------------------------------EFIARYKQSQESDDERSNSS------LP 169
+ E ++ +QE D R LP
Sbjct: 181 VSGASTTATTDAAAAVLSESEPPIYVVDLEWAEQLSAELTAQEYDRRRRGGGTAEVGPLP 240
Query: 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 229
++ S+CPGW+CY EKQ GS +LP++ V S Q G+ K + L YHV++
Sbjct: 241 LIVSSCPGWVCYCEKQ-GSALLPHLCPVMSAQGIAGSYAKRAVAANL-------YHVSIQ 292
Query: 230 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP--EVDSVLTTGEVLDLI---------- 277
PC+D+KLEAAR+ + S +G ++P D VL+T E+L+ +
Sbjct: 293 PCFDRKLEAARDS----MTSSTTAPPADGADMPVFYTDCVLSTAELLEWMKEADPTLPWR 348
Query: 278 -------------------------QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 312
Q +N E S + + H S
Sbjct: 349 GRLDTNVTAAAVALVGGNCPGHTAQQPTQLNEEEAPTSTSSPAASAIFAPAHDAARFAGS 408
Query: 313 GGYAETVFRHAAKTLFGKVIEG---HLEFKTIRNSDFREVALEVEGKTLLKFALC----- 364
GGY +V H + +EG + +A EV+ + A C
Sbjct: 409 GGYHRSVIAHRLR------VEGAAALPSSSSPSPDTPASIAYEVKRNRNHQLATCAALPE 462
Query: 365 ------YGFQNLQNIVRKVKMR---KCDYQFVEVMACPSGCLNGGGQIKP 405
YGFQ +QN+VR +K R Y F+E+MACP GCLNGGGQ++P
Sbjct: 463 EVFCIGYGFQQIQNVVRGLKKRIPAMRGYTFIELMACPDGCLNGGGQVRP 512
>gi|317470545|ref|ZP_07929933.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
gi|316902060|gb|EFV23986.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
Length = 650
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 213/418 (50%), Gaps = 41/418 (9%)
Query: 58 DCLACSG-CITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQV 115
+C C+ C + T E Q + E + + K VI+S SP RA+L E FG + V
Sbjct: 60 NCGQCANVCPVESITETYEYQQVREAVKDPEK--IVIVSTSPSVRAALGEEFGTEEGMFV 117
Query: 116 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSAC 175
K+ L++LGV + DT+ S DLT++E +E I R + LP +S C
Sbjct: 118 QGKMVALLRALGVDYVLDTNFSADLTIMEEASELIERIT--------KGTKPLPQFTSCC 169
Query: 176 PGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235
P W+ +AE +L +IS+ KSP G TIK + + +G P++I +V + PC KK
Sbjct: 170 PAWVKFAEIYYPE-LLDHISTAKSPIGMQGPTIKTYFAKLMGIDPEKIVNVALTPCTAKK 228
Query: 236 LEAAREDFVFQLDSQEETYRDEGL-----EIPEVDSVLTTGEVLDLIQLKAVNFEALEES 290
E RE+ +D G+ ++ ++D V+TT E + + ++F +LE+S
Sbjct: 229 FEIRREEM-----------KDAGISYGKEDMRDMDHVITTREAALWAKEEEIDFLSLEDS 277
Query: 291 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSD-FRE 348
D+ + G ++G +SGG E R A + + K + + K +R + +E
Sbjct: 278 DFDQFMGEGSGAGVIFG---NSGGVMEAALRTAYEFITKEKAPDILYDLKPVRGMEGVKE 334
Query: 349 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-- 406
+L++ G + A+ YG N + ++ KVK Y F+EVM CP GC+ GGGQ K K
Sbjct: 335 ASLDI-GDLTVNVAVVYGTGNARKMIDKVKSSDKQYHFIEVMTCPGGCIGGGGQPKDKEF 393
Query: 407 PGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 462
GQ +E K +E++Y + + + +N ++ LY+++ +P SE A++ +HT YH
Sbjct: 394 KGQIIQE--KRIESLYRRDSGMQIRASHENEQIKKLYEKFYGEPLSELAEQMLHTMYH 449
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,045,608,148
Number of Sequences: 23463169
Number of extensions: 282618111
Number of successful extensions: 749844
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 918
Number of HSP's that attempted gapping in prelim test: 737096
Number of HSP's gapped (non-prelim): 3885
length of query: 475
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 329
effective length of database: 8,933,572,693
effective search space: 2939145415997
effective search space used: 2939145415997
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)