Query 011877
Match_columns 475
No_of_seqs 190 out of 1371
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2439 Nuclear architecture r 100.0 1E-119 3E-124 902.1 25.5 446 6-475 1-459 (459)
2 COG4624 Iron only hydrogenase 100.0 3E-91 6.6E-96 699.5 20.0 374 47-462 24-403 (411)
3 TIGR02512 Fe_only_hydrog hydro 100.0 5.8E-84 1.3E-88 669.7 33.5 325 52-404 45-373 (374)
4 PF02906 Fe_hyd_lg_C: Iron onl 100.0 1.9E-81 4.2E-86 628.9 24.9 284 90-403 1-285 (285)
5 PF02256 Fe_hyd_SSU: Iron hydr 99.3 2.7E-13 5.9E-18 104.9 2.0 54 411-464 4-59 (60)
6 PF12837 Fer4_6: 4Fe-4S bindin 97.3 6.3E-05 1.4E-09 47.5 0.3 24 51-74 1-24 (24)
7 PRK12809 putative oxidoreducta 97.3 0.00013 2.7E-09 81.7 2.6 79 56-134 109-197 (639)
8 PF00037 Fer4: 4Fe-4S binding 97.1 0.00021 4.6E-09 45.0 1.0 24 52-75 1-24 (24)
9 PF12797 Fer4_2: 4Fe-4S bindin 96.1 0.0021 4.6E-08 39.6 0.7 20 52-71 3-22 (22)
10 COG1034 NuoG NADH dehydrogenas 96.0 0.0027 5.9E-08 71.0 1.3 83 60-145 187-271 (693)
11 COG1142 HycB Fe-S-cluster-cont 95.7 0.0043 9.4E-08 57.6 1.2 48 31-79 57-104 (165)
12 PF14697 Fer4_21: 4Fe-4S diclu 95.6 0.0051 1.1E-07 47.4 1.3 34 42-75 24-58 (59)
13 PF14697 Fer4_21: 4Fe-4S diclu 95.0 0.01 2.2E-07 45.7 1.1 22 52-73 1-22 (59)
14 PF12800 Fer4_4: 4Fe-4S bindin 95.0 0.012 2.7E-07 33.9 1.1 15 57-71 2-16 (17)
15 COG2768 Uncharacterized Fe-S c 94.8 0.017 3.7E-07 58.2 2.2 47 39-87 205-254 (354)
16 PF13247 Fer4_11: 4Fe-4S diclu 94.7 0.011 2.4E-07 50.3 0.6 39 39-77 21-60 (98)
17 TIGR02494 PFLE_PFLC glycyl-rad 94.7 0.035 7.6E-07 55.9 4.3 83 50-136 75-163 (295)
18 PF13187 Fer4_9: 4Fe-4S diclus 94.4 0.018 3.8E-07 43.0 1.1 20 55-74 36-55 (55)
19 PF12798 Fer4_3: 4Fe-4S bindin 94.3 0.014 3.1E-07 32.6 0.3 15 59-73 1-15 (15)
20 PRK15449 ferredoxin-like prote 93.8 0.032 6.9E-07 47.2 1.6 36 38-73 42-77 (95)
21 PF13237 Fer4_10: 4Fe-4S diclu 93.7 0.026 5.5E-07 41.8 0.8 21 51-71 1-21 (52)
22 COG0437 HybA Fe-S-cluster-cont 93.3 0.05 1.1E-06 52.2 2.3 42 34-75 76-118 (203)
23 PF13746 Fer4_18: 4Fe-4S diclu 93.2 0.036 7.8E-07 44.1 0.9 21 53-73 46-66 (69)
24 PF12838 Fer4_7: 4Fe-4S diclus 93.1 0.04 8.8E-07 40.8 1.0 24 50-73 29-52 (52)
25 COG3383 Uncharacterized anaero 93.0 0.037 8.1E-07 61.7 1.0 29 48-76 183-211 (978)
26 PRK09626 oorD 2-oxoglutarate-a 92.9 0.054 1.2E-06 46.2 1.7 28 48-75 7-34 (103)
27 COG1143 NuoI Formate hydrogenl 92.8 0.048 1E-06 51.1 1.3 29 48-76 86-114 (172)
28 PRK13409 putative ATPase RIL; 92.7 0.043 9.2E-07 61.0 0.9 35 47-81 39-73 (590)
29 PF13237 Fer4_10: 4Fe-4S diclu 92.5 0.061 1.3E-06 39.7 1.3 25 46-70 28-52 (52)
30 PRK09625 porD pyruvate flavodo 92.5 0.073 1.6E-06 47.8 2.0 23 51-73 53-75 (133)
31 PRK09624 porD pyuvate ferredox 92.1 0.071 1.5E-06 45.9 1.3 37 39-75 63-99 (105)
32 COG1245 Predicted ATPase, RNas 91.6 0.064 1.4E-06 57.2 0.7 34 48-81 41-74 (591)
33 COG1145 NapF Ferredoxin [Energ 91.3 0.089 1.9E-06 43.5 1.0 26 51-76 23-48 (99)
34 COG1143 NuoI Formate hydrogenl 91.2 0.076 1.6E-06 49.8 0.6 32 47-78 45-76 (172)
35 PRK08348 NADH-plastoquinone ox 90.9 0.1 2.2E-06 45.7 1.1 28 48-75 33-60 (120)
36 TIGR02936 fdxN_nitrog ferredox 90.8 0.086 1.9E-06 43.6 0.5 24 52-75 65-88 (91)
37 PRK08764 ferredoxin; Provision 90.8 0.13 2.9E-06 46.1 1.8 20 55-74 83-102 (135)
38 PRK05113 electron transport co 90.7 0.11 2.3E-06 49.6 1.1 24 51-74 138-161 (191)
39 PRK08222 hydrogenase 4 subunit 90.4 0.14 3.1E-06 48.3 1.7 25 52-76 68-92 (181)
40 TIGR02936 fdxN_nitrog ferredox 90.3 0.1 2.3E-06 43.0 0.6 29 48-76 12-40 (91)
41 PRK06991 ferredoxin; Provision 90.2 0.11 2.4E-06 52.1 0.9 25 50-74 78-102 (270)
42 PF13459 Fer4_15: 4Fe-4S singl 90.2 0.13 2.7E-06 40.1 0.9 22 52-73 1-22 (65)
43 TIGR03478 DMSO_red_II_bet DMSO 90.2 0.11 2.4E-06 53.0 0.8 36 39-74 143-179 (321)
44 TIGR01660 narH nitrate reducta 90.0 0.13 2.8E-06 54.9 1.1 40 37-76 193-233 (492)
45 COG1141 Fer Ferredoxin [Energy 90.0 0.12 2.7E-06 41.0 0.7 23 51-73 2-24 (68)
46 TIGR02179 PorD_KorD 2-oxoacid: 89.8 0.21 4.5E-06 40.1 1.9 22 52-73 50-71 (78)
47 TIGR01944 rnfB electron transp 89.7 0.16 3.5E-06 47.2 1.4 26 49-74 105-130 (165)
48 CHL00065 psaC photosystem I su 89.0 0.18 3.9E-06 40.9 1.0 27 50-76 2-28 (81)
49 TIGR00403 ndhI NADH-plastoquin 88.9 0.17 3.7E-06 47.9 1.0 22 52-73 97-118 (183)
50 PF13187 Fer4_9: 4Fe-4S diclus 88.9 0.13 2.9E-06 38.2 0.2 19 58-76 1-19 (55)
51 PRK09623 vorD 2-ketoisovalerat 88.9 0.19 4.2E-06 43.1 1.2 22 52-73 76-97 (105)
52 TIGR02060 aprB adenosine phosp 88.7 0.14 2.9E-06 46.1 0.1 45 37-81 23-69 (132)
53 TIGR00403 ndhI NADH-plastoquin 88.5 0.22 4.7E-06 47.2 1.4 26 49-74 54-79 (183)
54 COG1146 Ferredoxin [Energy pro 88.4 0.2 4.4E-06 39.3 0.9 28 49-76 33-60 (68)
55 PRK07569 bidirectional hydroge 88.3 0.19 4.2E-06 49.2 0.9 42 55-98 188-229 (234)
56 PRK08348 NADH-plastoquinone ox 88.2 0.24 5.2E-06 43.4 1.4 38 39-76 54-92 (120)
57 TIGR00402 napF ferredoxin-type 88.0 0.33 7.1E-06 41.3 2.1 26 51-76 60-85 (101)
58 COG2221 DsrA Dissimilatory sul 88.0 0.24 5.2E-06 50.5 1.3 35 37-72 182-216 (317)
59 PLN00071 photosystem I subunit 87.9 0.22 4.8E-06 40.3 0.9 26 51-76 3-28 (81)
60 TIGR02066 dsrB sulfite reducta 87.9 0.24 5.3E-06 51.4 1.4 28 48-75 205-232 (341)
61 PRK14993 tetrathionate reducta 87.6 0.22 4.7E-06 49.3 0.8 39 37-75 110-148 (244)
62 PF13370 Fer4_13: 4Fe-4S singl 87.2 0.24 5.1E-06 37.9 0.7 20 54-73 1-20 (58)
63 TIGR02912 sulfite_red_C sulfit 87.2 0.28 6E-06 50.2 1.3 27 49-75 193-219 (314)
64 PRK08222 hydrogenase 4 subunit 87.0 0.23 5E-06 46.9 0.6 28 49-76 30-57 (181)
65 CHL00014 ndhI NADH dehydrogena 86.6 0.34 7.3E-06 45.1 1.5 26 49-74 51-76 (167)
66 TIGR01582 FDH-beta formate deh 86.4 0.29 6.3E-06 49.5 1.0 41 35-75 101-142 (283)
67 PF12838 Fer4_7: 4Fe-4S diclus 86.3 0.22 4.7E-06 36.8 0.0 20 58-77 1-20 (52)
68 TIGR02179 PorD_KorD 2-oxoacid: 86.0 0.3 6.5E-06 39.1 0.7 25 51-75 19-43 (78)
69 PRK12387 formate hydrogenlyase 85.9 0.48 1E-05 44.6 2.1 24 50-73 31-54 (180)
70 TIGR02064 dsrA sulfite reducta 85.7 0.45 9.8E-06 50.5 2.0 35 39-73 254-288 (402)
71 TIGR03149 cyt_nit_nrfC cytochr 85.7 0.38 8.3E-06 47.0 1.4 37 38-74 105-142 (225)
72 CHL00065 psaC photosystem I su 85.5 0.31 6.7E-06 39.5 0.5 24 53-76 42-65 (81)
73 TIGR02163 napH_ ferredoxin-typ 85.4 0.36 7.8E-06 48.0 1.1 27 49-75 226-252 (255)
74 KOG3256 NADH:ubiquinone oxidor 85.4 0.33 7.1E-06 44.9 0.7 28 48-75 141-168 (212)
75 CHL00014 ndhI NADH dehydrogena 85.4 0.29 6.2E-06 45.6 0.3 26 51-76 93-118 (167)
76 TIGR03048 PS_I_psaC photosyste 85.3 0.38 8.2E-06 38.9 0.9 24 52-75 3-26 (80)
77 PRK05888 NADH dehydrogenase su 84.9 0.44 9.5E-06 44.1 1.3 26 50-75 46-76 (164)
78 PRK06273 ferredoxin; Provision 84.8 0.42 9.1E-06 44.5 1.1 24 51-74 85-108 (165)
79 PRK02651 photosystem I subunit 84.8 0.4 8.7E-06 38.7 0.9 24 52-75 4-27 (81)
80 COG1144 Pyruvate:ferredoxin ox 84.7 0.47 1E-05 39.6 1.2 37 39-75 47-84 (91)
81 PRK09477 napH quinol dehydroge 84.6 0.55 1.2E-05 47.1 1.9 24 53-76 238-261 (271)
82 PRK09625 porD pyruvate flavodo 84.4 0.35 7.7E-06 43.3 0.4 22 53-74 85-106 (133)
83 TIGR02494 PFLE_PFLC glycyl-rad 84.4 0.49 1.1E-05 47.6 1.5 28 48-75 39-66 (295)
84 PRK05888 NADH dehydrogenase su 84.3 0.45 9.7E-06 44.0 1.1 25 52-76 92-116 (164)
85 PRK06273 ferredoxin; Provision 84.1 0.38 8.3E-06 44.8 0.5 27 50-76 42-68 (165)
86 TIGR01971 NuoI NADH-quinone ox 84.1 0.51 1.1E-05 41.2 1.3 25 52-76 77-101 (122)
87 TIGR01971 NuoI NADH-quinone ox 84.0 0.45 9.7E-06 41.5 0.9 26 50-75 31-61 (122)
88 COG1145 NapF Ferredoxin [Energ 84.0 0.51 1.1E-05 38.9 1.2 39 38-76 40-82 (99)
89 PRK10882 hydrogenase 2 protein 83.3 0.46 9.9E-06 49.1 0.8 36 39-74 124-160 (328)
90 TIGR02951 DMSO_dmsB DMSO reduc 83.0 0.59 1.3E-05 43.0 1.3 38 38-75 75-113 (161)
91 PRK12387 formate hydrogenlyase 82.5 0.88 1.9E-05 42.8 2.3 26 52-77 68-93 (180)
92 PLN00071 photosystem I subunit 82.5 0.5 1.1E-05 38.2 0.5 23 54-76 43-65 (81)
93 PRK08493 NADH dehydrogenase su 82.4 0.53 1.2E-05 54.3 0.9 22 56-77 203-224 (819)
94 TIGR03048 PS_I_psaC photosyste 82.4 0.48 1E-05 38.3 0.4 24 53-76 41-64 (80)
95 TIGR02512 Fe_only_hydrog hydro 82.4 0.5 1.1E-05 49.6 0.7 24 52-75 2-25 (374)
96 PRK06259 succinate dehydrogena 82.0 15 0.00033 39.8 11.9 105 115-235 278-388 (486)
97 TIGR02910 sulfite_red_A sulfit 81.2 0.85 1.8E-05 47.2 1.8 31 53-87 297-327 (334)
98 PRK10194 ferredoxin-type prote 81.1 0.66 1.4E-05 42.8 0.9 25 52-76 133-157 (163)
99 PRK02651 photosystem I subunit 81.1 0.6 1.3E-05 37.6 0.6 23 53-75 42-64 (81)
100 PRK06991 ferredoxin; Provision 80.9 0.69 1.5E-05 46.5 1.0 23 54-76 112-134 (270)
101 PRK12771 putative glutamate sy 80.8 0.71 1.5E-05 51.0 1.2 25 51-75 535-559 (564)
102 COG1150 HdrC Heterodisulfide r 80.7 0.99 2.2E-05 43.0 1.9 76 55-130 37-119 (195)
103 PF13484 Fer4_16: 4Fe-4S doubl 80.4 0.52 1.1E-05 36.5 -0.0 20 58-77 1-20 (67)
104 PRK09626 oorD 2-oxoglutarate-a 80.1 0.84 1.8E-05 38.8 1.2 25 52-76 48-72 (103)
105 PF13183 Fer4_8: 4Fe-4S diclus 79.9 0.44 9.6E-06 35.5 -0.6 17 56-72 2-18 (57)
106 PRK10330 formate dehydrogenase 79.1 0.99 2.1E-05 42.3 1.4 37 39-76 70-106 (181)
107 PRK05113 electron transport co 78.7 1.1 2.3E-05 42.8 1.5 26 49-74 106-131 (191)
108 TIGR02176 pyruv_ox_red pyruvat 78.4 1.1 2.4E-05 53.7 1.9 32 52-83 734-767 (1165)
109 TIGR01944 rnfB electron transp 78.3 1 2.2E-05 41.8 1.2 25 51-75 137-161 (165)
110 PRK09624 porD pyuvate ferredox 78.0 0.84 1.8E-05 39.2 0.5 23 52-74 46-68 (105)
111 COG1453 Predicted oxidoreducta 77.8 1.2 2.6E-05 46.4 1.6 18 56-73 350-367 (391)
112 PRK09898 hypothetical protein; 77.1 1.4 2.9E-05 42.5 1.7 37 39-75 135-172 (208)
113 PF13534 Fer4_17: 4Fe-4S diclu 76.8 1.5 3.3E-05 33.2 1.6 18 58-75 1-18 (61)
114 PRK09623 vorD 2-ketoisovalerat 76.6 1.1 2.5E-05 38.3 0.9 25 50-74 44-68 (105)
115 COG4231 Indolepyruvate ferredo 76.0 1.3 2.7E-05 49.2 1.3 27 49-75 600-626 (640)
116 COG0247 GlpC Fe-S oxidoreducta 76.0 6.3 0.00014 40.9 6.5 112 114-236 164-287 (388)
117 PRK09326 F420H2 dehydrogenase 75.6 2.7 5.9E-05 43.5 3.6 71 54-138 50-120 (341)
118 PRK07118 ferredoxin; Validated 75.2 1.3 2.8E-05 44.8 1.1 37 39-76 151-187 (280)
119 PRK14028 pyruvate ferredoxin o 74.8 1.4 3E-05 45.0 1.2 25 50-74 240-264 (312)
120 TIGR00402 napF ferredoxin-type 74.3 1.5 3.3E-05 37.2 1.1 26 51-76 28-53 (101)
121 TIGR02700 flavo_MJ0208 archaeo 73.7 1.4 3.1E-05 43.2 0.9 27 49-75 140-166 (234)
122 cd01916 ACS_1 Acetyl-CoA synth 73.6 8.4 0.00018 44.0 7.0 17 56-72 402-418 (731)
123 TIGR02060 aprB adenosine phosp 73.6 1.6 3.5E-05 39.2 1.2 24 52-75 3-31 (132)
124 PRK09326 F420H2 dehydrogenase 73.5 1.3 2.8E-05 46.0 0.6 25 52-76 7-31 (341)
125 PRK10194 ferredoxin-type prote 73.4 2 4.2E-05 39.7 1.7 24 52-75 61-84 (163)
126 COG2440 FixX Ferredoxin-like p 73.2 1.6 3.4E-05 37.1 0.9 37 38-74 46-83 (99)
127 TIGR03287 methan_mark_16 putat 73.0 1.1 2.4E-05 47.2 -0.0 23 53-75 326-348 (391)
128 TIGR00397 mauM_napG MauM/NapG 72.7 1.3 2.9E-05 42.9 0.4 21 56-76 52-72 (213)
129 TIGR00397 mauM_napG MauM/NapG 72.6 1.8 3.9E-05 41.9 1.3 22 51-72 169-190 (213)
130 PRK08318 dihydropyrimidine deh 72.6 1.7 3.6E-05 46.3 1.1 26 51-76 371-397 (420)
131 PRK07118 ferredoxin; Validated 72.3 1.6 3.5E-05 44.1 0.9 36 39-75 225-260 (280)
132 PRK09853 putative selenate red 72.0 2 4.4E-05 50.6 1.8 38 35-73 898-942 (1019)
133 PRK07570 succinate dehydrogena 71.3 1.7 3.7E-05 43.2 0.8 20 53-72 153-172 (250)
134 PRK14028 pyruvate ferredoxin o 71.1 1.7 3.6E-05 44.5 0.7 24 52-75 284-307 (312)
135 PF13534 Fer4_17: 4Fe-4S diclu 70.9 1.6 3.4E-05 33.1 0.4 20 54-73 41-60 (61)
136 TIGR03224 benzo_boxA benzoyl-C 70.6 2 4.4E-05 45.7 1.3 26 50-75 3-28 (411)
137 PF13183 Fer4_8: 4Fe-4S diclus 70.3 1.5 3.2E-05 32.7 0.1 16 57-72 41-56 (57)
138 TIGR03290 CoB_CoM_SS_C CoB--Co 70.3 2.8 6.2E-05 37.8 2.0 16 57-72 2-17 (144)
139 COG2878 Predicted NADH:ubiquin 70.2 1.8 3.9E-05 40.8 0.7 44 46-89 104-149 (198)
140 PRK15055 anaerobic sulfite red 69.9 2.5 5.5E-05 44.0 1.7 19 55-73 305-323 (344)
141 TIGR02700 flavo_MJ0208 archaeo 69.9 2.2 4.7E-05 41.9 1.2 37 39-76 160-196 (234)
142 cd07030 RNAP_D D subunit of Ar 69.9 2.1 4.5E-05 42.6 1.1 19 57-75 169-187 (259)
143 TIGR02176 pyruv_ox_red pyruvat 69.8 2 4.4E-05 51.6 1.1 27 50-76 676-702 (1165)
144 COG1149 MinD superfamily P-loo 69.6 1.7 3.6E-05 43.7 0.3 25 50-74 62-86 (284)
145 TIGR03224 benzo_boxA benzoyl-C 68.5 2.3 4.9E-05 45.3 1.1 38 37-75 20-57 (411)
146 PRK15055 anaerobic sulfite red 68.2 2 4.3E-05 44.7 0.6 16 56-71 225-240 (344)
147 PRK08764 ferredoxin; Provision 67.9 2.5 5.3E-05 37.9 1.0 22 54-75 112-133 (135)
148 COG1148 HdrA Heterodisulfide r 67.6 3.4 7.3E-05 44.8 2.1 26 50-76 554-579 (622)
149 TIGR01945 rnfC electron transp 67.4 3.2 6.9E-05 44.6 1.9 22 53-74 359-380 (435)
150 PTZ00305 NADH:ubiquinone oxido 67.4 2 4.2E-05 43.6 0.3 22 51-72 206-227 (297)
151 PRK08493 NADH dehydrogenase su 67.1 2.6 5.7E-05 48.7 1.3 23 50-72 134-156 (819)
152 PRK09476 napG quinol dehydroge 67.0 2.2 4.7E-05 42.6 0.5 21 52-72 179-199 (254)
153 COG1149 MinD superfamily P-loo 66.4 2.5 5.4E-05 42.5 0.8 43 34-76 76-118 (284)
154 PRK12809 putative oxidoreducta 66.0 2.7 5.8E-05 47.3 1.1 39 37-76 66-104 (639)
155 PRK09477 napH quinol dehydroge 65.8 2.5 5.4E-05 42.4 0.7 23 51-73 201-224 (271)
156 PRK00783 DNA-directed RNA poly 65.7 2.9 6.2E-05 41.7 1.1 27 48-75 161-187 (263)
157 TIGR00384 dhsB succinate dehyd 65.4 3.9 8.5E-05 39.6 2.0 19 55-73 192-210 (220)
158 TIGR03336 IOR_alpha indolepyru 65.4 2.6 5.7E-05 47.0 0.9 27 49-75 542-570 (595)
159 PRK09476 napG quinol dehydroge 65.3 2.2 4.8E-05 42.5 0.2 21 56-76 58-78 (254)
160 PRK13795 hypothetical protein; 65.2 2.9 6.3E-05 47.1 1.2 27 49-75 573-599 (636)
161 PRK11168 glpC sn-glycerol-3-ph 64.7 2.6 5.6E-05 44.2 0.6 21 54-74 4-24 (396)
162 PRK07860 NADH dehydrogenase su 64.5 2.8 6.1E-05 48.5 0.9 20 58-77 191-210 (797)
163 TIGR01973 NuoG NADH-quinone ox 64.4 2.8 6.1E-05 46.8 0.8 20 58-77 183-202 (603)
164 PRK05035 electron transport co 64.1 6.3 0.00014 44.9 3.5 21 55-75 368-388 (695)
165 TIGR02910 sulfite_red_A sulfit 63.9 2.7 5.9E-05 43.6 0.6 17 56-72 219-235 (334)
166 PRK12814 putative NADPH-depend 63.9 2.9 6.4E-05 47.1 0.9 24 49-72 608-631 (652)
167 TIGR01936 nqrA NADH:ubiquinone 63.7 3.3 7.2E-05 44.6 1.2 22 55-76 371-392 (447)
168 COG0479 FrdB Succinate dehydro 63.7 2.6 5.7E-05 41.5 0.4 19 55-73 140-158 (234)
169 COG1146 Ferredoxin [Energy pro 63.5 3.2 7E-05 32.4 0.8 23 52-74 3-25 (68)
170 KOG0063 RNAse L inhibitor, ABC 63.2 2.3 4.9E-05 45.5 -0.2 25 52-76 45-69 (592)
171 TIGR00384 dhsB succinate dehyd 62.8 2.9 6.2E-05 40.6 0.5 18 55-72 136-153 (220)
172 PRK09898 hypothetical protein; 62.6 2.6 5.7E-05 40.5 0.2 26 55-80 179-204 (208)
173 PRK12769 putative oxidoreducta 62.5 4 8.7E-05 46.0 1.6 24 50-73 78-101 (654)
174 TIGR03294 FrhG coenzyme F420 h 62.3 2.6 5.7E-05 41.3 0.1 27 50-76 167-193 (228)
175 PRK08640 sdhB succinate dehydr 61.8 3.1 6.8E-05 41.3 0.6 19 55-73 150-168 (249)
176 PRK00941 acetyl-CoA decarbonyl 61.1 6 0.00013 45.4 2.6 18 55-72 440-457 (781)
177 PRK07569 bidirectional hydroge 61.1 3.6 7.7E-05 40.3 0.8 23 49-71 138-160 (234)
178 COG2768 Uncharacterized Fe-S c 60.6 3.9 8.5E-05 41.7 1.0 29 48-76 184-212 (354)
179 PRK08318 dihydropyrimidine deh 60.2 3.5 7.6E-05 43.9 0.6 24 49-72 334-357 (420)
180 PRK09129 NADH dehydrogenase su 60.2 3.2 6.9E-05 47.8 0.3 21 50-70 137-157 (776)
181 TIGR02163 napH_ ferredoxin-typ 59.9 4 8.7E-05 40.5 1.0 23 51-73 194-217 (255)
182 TIGR03315 Se_ygfK putative sel 59.9 4.7 0.0001 47.8 1.6 27 50-76 913-940 (1012)
183 TIGR02745 ccoG_rdxA_fixG cytoc 59.8 5 0.00011 43.2 1.7 17 56-72 230-246 (434)
184 PRK05035 electron transport co 59.2 3.8 8.2E-05 46.6 0.7 17 57-73 409-425 (695)
185 PRK09130 NADH dehydrogenase su 58.6 3.9 8.5E-05 46.5 0.7 20 58-77 186-205 (687)
186 TIGR01973 NuoG NADH-quinone ox 57.9 4.6 9.9E-05 45.1 1.1 23 49-71 134-156 (603)
187 PRK12576 succinate dehydrogena 57.9 4.1 9E-05 41.1 0.6 18 55-72 150-167 (279)
188 TIGR03290 CoB_CoM_SS_C CoB--Co 57.8 6.9 0.00015 35.3 2.0 18 56-73 45-62 (144)
189 PRK13984 putative oxidoreducta 57.7 5.8 0.00013 44.1 1.8 17 56-72 184-200 (604)
190 COG2878 Predicted NADH:ubiquin 57.4 2.2 4.8E-05 40.3 -1.3 39 39-77 127-165 (198)
191 PRK13552 frdB fumarate reducta 57.1 4.1 8.9E-05 40.2 0.5 18 55-72 147-164 (239)
192 COG4656 RnfC Predicted NADH:ub 56.9 3.6 7.9E-05 44.7 0.1 19 58-76 366-384 (529)
193 PRK12575 succinate dehydrogena 56.3 6.1 0.00013 38.9 1.5 18 56-73 200-217 (235)
194 PRK12386 fumarate reductase ir 56.1 4.4 9.6E-05 40.3 0.5 18 55-72 140-157 (251)
195 TIGR00273 iron-sulfur cluster- 56.0 4.3 9.4E-05 43.6 0.5 18 55-72 291-308 (432)
196 PRK05352 Na(+)-translocating N 55.7 6 0.00013 42.7 1.5 23 54-76 371-393 (448)
197 COG2221 DsrA Dissimilatory sul 55.6 3.4 7.3E-05 42.3 -0.4 26 52-77 167-192 (317)
198 PRK13984 putative oxidoreducta 55.0 4.7 0.0001 44.9 0.5 26 50-75 38-63 (604)
199 TIGR02912 sulfite_red_C sulfit 54.5 5.1 0.00011 41.0 0.6 22 51-72 163-184 (314)
200 PRK08166 NADH dehydrogenase su 53.2 5.1 0.00011 46.6 0.5 21 50-70 142-162 (847)
201 PRK09130 NADH dehydrogenase su 53.1 5.2 0.00011 45.5 0.5 20 52-71 140-159 (687)
202 PRK09129 NADH dehydrogenase su 53.1 5.6 0.00012 45.8 0.8 20 58-77 185-204 (776)
203 PRK08166 NADH dehydrogenase su 53.0 5.5 0.00012 46.4 0.7 20 58-77 190-209 (847)
204 TIGR03294 FrhG coenzyme F420 h 52.9 6 0.00013 38.7 0.8 36 39-75 186-221 (228)
205 PRK12385 fumarate reductase ir 52.8 4.9 0.00011 39.8 0.2 18 55-72 145-162 (244)
206 TIGR00276 iron-sulfur cluster 52.6 4.9 0.00011 40.7 0.2 21 55-75 157-177 (282)
207 PRK13795 hypothetical protein; 52.1 5.6 0.00012 44.8 0.6 23 53-75 608-630 (636)
208 TIGR01945 rnfC electron transp 51.0 6.7 0.00014 42.1 0.9 31 57-87 402-432 (435)
209 COG3383 Uncharacterized anaero 51.0 4.3 9.3E-05 46.0 -0.5 21 52-72 144-164 (978)
210 TIGR03379 glycerol3P_GlpC glyc 50.3 6.5 0.00014 41.3 0.7 18 55-72 3-20 (397)
211 PRK12386 fumarate reductase ir 49.9 9.2 0.0002 38.1 1.6 30 55-84 198-228 (251)
212 PRK05950 sdhB succinate dehydr 49.7 10 0.00022 37.1 1.8 18 56-73 197-214 (232)
213 PRK12385 fumarate reductase ir 49.6 9.1 0.0002 37.9 1.6 18 56-73 202-219 (244)
214 PRK07860 NADH dehydrogenase su 49.4 6.4 0.00014 45.6 0.5 21 51-71 144-164 (797)
215 TIGR03149 cyt_nit_nrfC cytochr 49.4 5.9 0.00013 38.6 0.2 24 55-78 150-183 (225)
216 PRK12577 succinate dehydrogena 49.3 6.3 0.00014 40.7 0.4 17 56-72 151-167 (329)
217 KOG3256 NADH:ubiquinone oxidor 49.3 5.1 0.00011 37.3 -0.3 25 51-75 105-129 (212)
218 PRK14993 tetrathionate reducta 49.3 10 0.00022 37.6 1.8 37 39-78 142-187 (244)
219 TIGR02951 DMSO_dmsB DMSO reduc 49.2 9 0.00019 35.1 1.3 30 55-84 120-158 (161)
220 TIGR02745 ccoG_rdxA_fixG cytoc 49.1 5.8 0.00013 42.7 0.1 16 57-72 255-270 (434)
221 COG1144 Pyruvate:ferredoxin ox 48.9 7.3 0.00016 32.7 0.6 26 49-74 27-52 (91)
222 PLN00129 succinate dehydrogena 48.7 6.8 0.00015 39.6 0.5 17 56-72 186-202 (276)
223 PRK12575 succinate dehydrogena 48.6 6.4 0.00014 38.8 0.3 18 55-72 142-159 (235)
224 COG1148 HdrA Heterodisulfide r 48.2 6.2 0.00014 42.9 0.1 34 54-87 584-619 (622)
225 PF13484 Fer4_16: 4Fe-4S doubl 48.1 7.5 0.00016 29.9 0.6 23 49-71 38-66 (67)
226 PF06574 FAD_syn: FAD syntheta 47.1 17 0.00036 33.5 2.8 60 90-153 38-100 (157)
227 PRK08640 sdhB succinate dehydr 46.4 12 0.00025 37.3 1.7 18 56-73 208-225 (249)
228 TIGR00273 iron-sulfur cluster- 46.3 9.5 0.00021 41.0 1.2 18 56-73 342-359 (432)
229 PRK05950 sdhB succinate dehydr 46.0 7.3 0.00016 38.1 0.2 18 55-72 139-156 (232)
230 TIGR02486 RDH reductive dehalo 46.0 7.8 0.00017 39.9 0.4 22 56-77 204-225 (314)
231 COG1034 NuoG NADH dehydrogenas 46.0 6.4 0.00014 44.7 -0.2 22 51-72 138-159 (693)
232 COG1139 Uncharacterized conser 45.7 6.9 0.00015 41.7 0.0 15 58-72 309-323 (459)
233 PRK10330 formate dehydrogenase 44.7 12 0.00026 35.0 1.5 31 53-83 125-161 (181)
234 PRK13552 frdB fumarate reducta 44.7 13 0.00028 36.7 1.7 18 56-73 205-222 (239)
235 PRK00783 DNA-directed RNA poly 44.7 8.8 0.00019 38.2 0.6 24 53-76 195-218 (263)
236 PRK11168 glpC sn-glycerol-3-ph 43.8 13 0.00029 38.9 1.8 23 51-73 48-70 (396)
237 PRK07570 succinate dehydrogena 43.3 10 0.00022 37.8 0.8 19 55-73 210-228 (250)
238 PRK11274 glcF glycolate oxidas 42.6 14 0.00031 38.8 1.8 18 56-73 72-89 (407)
239 TIGR03287 methan_mark_16 putat 42.0 11 0.00024 39.9 0.8 27 49-75 294-322 (391)
240 cd07030 RNAP_D D subunit of Ar 41.9 8.9 0.00019 38.1 0.1 22 55-76 197-218 (259)
241 PRK12576 succinate dehydrogena 40.4 16 0.00035 36.9 1.7 19 55-73 204-222 (279)
242 PRK11274 glcF glycolate oxidas 40.0 10 0.00022 40.0 0.2 18 55-72 21-38 (407)
243 PLN00129 succinate dehydrogena 39.8 16 0.00036 36.8 1.7 19 55-73 242-260 (276)
244 PF14691 Fer4_20: Dihydroprymi 39.1 14 0.00031 32.1 0.9 35 52-90 17-53 (111)
245 PRK10882 hydrogenase 2 protein 38.0 15 0.00032 38.1 1.0 33 54-86 169-214 (328)
246 COG0437 HybA Fe-S-cluster-cont 37.6 11 0.00025 36.3 0.1 22 50-71 11-32 (203)
247 PRK06259 succinate dehydrogena 37.5 17 0.00038 39.3 1.5 19 55-73 131-149 (486)
248 TIGR03379 glycerol3P_GlpC glyc 37.4 19 0.00042 37.8 1.8 19 55-73 50-68 (397)
249 cd01916 ACS_1 Acetyl-CoA synth 37.4 13 0.00029 42.4 0.6 23 51-73 359-381 (731)
250 TIGR03336 IOR_alpha indolepyru 36.3 18 0.00039 40.4 1.5 24 50-74 572-595 (595)
251 PF09756 DDRGK: DDRGK domain; 36.2 36 0.00079 32.5 3.3 56 78-141 100-155 (188)
252 PRK00941 acetyl-CoA decarbonyl 35.0 16 0.00034 42.1 0.7 23 51-73 398-420 (781)
253 PRK12577 succinate dehydrogena 34.9 21 0.00045 36.9 1.6 18 56-73 208-225 (329)
254 COG1600 Uncharacterized Fe-S p 34.7 16 0.00034 38.0 0.6 20 57-76 185-204 (337)
255 TIGR01582 FDH-beta formate deh 34.3 14 0.0003 37.6 0.1 21 51-71 23-43 (283)
256 TIGR00314 cdhA CO dehydrogenas 33.6 19 0.00041 41.4 1.1 22 51-72 393-414 (784)
257 TIGR01318 gltD_gamma_fam gluta 33.2 24 0.00053 38.0 1.8 36 50-89 33-70 (467)
258 PRK15033 tricarballylate utili 32.8 16 0.00035 38.6 0.4 16 56-71 66-81 (389)
259 TIGR00314 cdhA CO dehydrogenas 31.7 20 0.00043 41.2 0.9 16 58-73 438-453 (784)
260 PF02236 Viral_DNA_bi: Viral D 30.1 47 0.001 27.7 2.6 41 181-222 44-84 (86)
261 TIGR01660 narH nitrate reducta 29.1 31 0.00066 37.4 1.6 28 49-76 173-202 (492)
262 TIGR00083 ribF riboflavin kina 28.8 1E+02 0.0022 31.3 5.3 61 90-154 31-93 (288)
263 COG0247 GlpC Fe-S oxidoreducta 27.8 21 0.00046 37.0 0.2 20 54-73 6-25 (388)
264 PF13592 HTH_33: Winged helix- 27.7 37 0.00081 25.8 1.5 36 99-136 9-44 (60)
265 PRK12769 putative oxidoreducta 27.6 36 0.00077 38.4 2.0 31 52-82 114-150 (654)
266 PF12225 MTHFR_C: Methylene-te 27.1 27 0.00059 29.7 0.7 18 50-67 14-31 (97)
267 TIGR03315 Se_ygfK putative sel 26.9 29 0.00063 41.3 1.1 18 57-74 881-902 (1012)
268 PF04914 DltD_C: DltD C-termin 26.3 1.4E+02 0.0029 26.8 5.0 57 77-135 36-96 (130)
269 COG0348 NapH Polyferredoxin [E 25.9 23 0.00051 37.4 0.1 16 58-73 246-261 (386)
270 TIGR03478 DMSO_red_II_bet DMSO 25.3 39 0.00085 34.9 1.6 26 51-76 123-150 (321)
271 PTZ00305 NADH:ubiquinone oxido 24.6 24 0.00052 35.9 -0.1 18 61-78 257-274 (297)
272 PRK12810 gltD glutamate syntha 24.5 44 0.00095 36.0 1.9 23 50-72 37-61 (471)
273 COG1150 HdrC Heterodisulfide r 24.2 82 0.0018 30.2 3.4 88 58-150 84-176 (195)
274 KOG3196 NADH:ubiquinone oxidor 23.9 1.1E+02 0.0023 29.5 4.0 57 366-423 132-194 (233)
275 cd01966 Nitrogenase_NifN_1 Nit 23.9 3.7E+02 0.0081 28.6 8.8 27 270-296 173-201 (417)
276 PF01726 LexA_DNA_bind: LexA D 23.5 89 0.0019 24.4 3.0 32 96-128 24-55 (65)
277 KOG0024 Sorbitol dehydrogenase 23.3 1.4E+02 0.003 31.2 5.0 83 54-142 151-256 (354)
278 PRK09853 putative selenate red 23.0 34 0.00074 40.7 0.7 20 54-73 883-906 (1019)
279 TIGR02540 gpx7 putative glutat 21.9 1.2E+02 0.0027 26.9 4.1 67 49-129 21-88 (153)
280 PRK13030 2-oxoacid ferredoxin 21.7 41 0.00089 40.6 1.0 23 49-71 654-677 (1159)
281 TIGR01316 gltA glutamate synth 21.7 56 0.0012 35.0 2.0 31 55-89 24-58 (449)
282 PRK12831 putative oxidoreducta 21.6 54 0.0012 35.4 1.9 22 51-72 34-57 (464)
283 COG4656 RnfC Predicted NADH:ub 21.6 41 0.0009 36.8 1.0 65 9-73 334-420 (529)
284 PF00403 HMA: Heavy-metal-asso 21.4 19 0.00041 27.0 -1.2 13 117-129 50-62 (62)
285 PRK12778 putative bifunctional 20.8 51 0.0011 37.9 1.5 35 51-89 323-359 (752)
286 TIGR02486 RDH reductive dehalo 20.5 55 0.0012 33.7 1.6 26 61-86 268-293 (314)
287 COG0602 NrdG Organic radical a 20.3 1.6E+02 0.0034 28.5 4.6 76 51-136 24-108 (212)
No 1
>KOG2439 consensus Nuclear architecture related protein [Nuclear structure]
Probab=100.00 E-value=1.3e-119 Score=902.07 Aligned_cols=446 Identities=48% Similarity=0.823 Sum_probs=401.4
Q ss_pred CccccCCCCCcccCCCcccccccccCCC----CCCCCCCc---ccccc---CCCCceeeccccccccccchhhcccchhh
Q 011877 6 SPTLRIGDLSDFIAPSQNCVVSLKKATF----KNPDKPQV---STSSK---QQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 6 s~~~~~~~lnD~i~p~~~Ci~p~~~~~~----~~~~~~~~---~~~~~---~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|++|+|+||||||+|+++||+|+..... ++..+.+. ...++ .++++|+|+++|||||+||||++|+++++
T Consensus 1 s~~l~l~dlnDFi~p~~~CikP~~~~k~~~~~~~~v~~d~~~~v~~e~g~t~~l~~~kISLsDCLACSGCITSaEtVlls 80 (459)
T KOG2439|consen 1 SALLRLSDLNDFIAPSLACIKPLQVSKTKKKKNIRVDADGPYEVIKEKGETHQLEKVKISLSDCLACSGCITSAETVLLS 80 (459)
T ss_pred CCcccccchhhhhchHHHhccchhhcccccCCcccccCCCcceeecCCCccccccceeeeHHhhhhccCccchhhhhhhh
Confidence 7999999999999999999999976332 22222222 22223 57889999999999999999999999999
Q ss_pred hccHHHHHHhhcCCC---eEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEechhhhhhhHHHHHHHHHHH
Q 011877 76 KQSLDEFLSNINKGK---AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 152 (475)
Q Consensus 76 ~~~~~~~~~~l~~~k---~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~Dts~gadi~~~e~~~E~~~r 152 (475)
+|++.+|++.|++.| .+||++|||+|+|||++||++..++..+|..|+|+|||+||+||++++++++.|.++||++|
T Consensus 81 ~Qs~~~~~k~l~~~k~~~~lvvsvSPQ~~~slAa~~gls~~e~~~~L~~F~kklgvhyv~DT~~sR~~sl~es~~Efv~~ 160 (459)
T KOG2439|consen 81 EQSHKEFLKVLQKSKQQKVLVVSVSPQSRASLAAKYGLSLREAALRLTSFFKKLGVHYVVDTSFSRDFSLSESYEEFVAR 160 (459)
T ss_pred hhhHHHHHHhhhhccccceEEEecChhHHHHHHHHhCCCHHHHHHHHHHHHHhcCeeEEeehHHHHHHHHHHHHHHHHHH
Confidence 999999999998765 77999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCeEEEEEEecc
Q 011877 153 YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 232 (475)
Q Consensus 153 ~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P~Lip~LS~vkSPq~i~g~liK~~~~~~~~i~p~~i~~V~I~PC~ 232 (475)
++++.. ....||++|+|||||||+||+| |.||||||++||||||+|++||.+++++.++.|++||||++|||+
T Consensus 161 ~r~~~~------~~~~PlLsSaCPG~v~YaEkt~-~~Lip~ls~vkSPQQi~Gslikd~~~~q~~l~p~~v~hvsvMPCf 233 (459)
T KOG2439|consen 161 YRQHSE------EERTPLLSSACPGWVCYAEKTH-GRLIPHLSRVKSPQQIMGSLIKDFFASQQSLSPEKVFHVSVMPCF 233 (459)
T ss_pred hhcccc------cccccchhhcCCceeEEeeccc-cccchhhhccCCHHHhhhHHHHHHHHHhcCCCccceeeEeecccc
Confidence 886433 3456999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred hhhHhhhchhhhhhccccccccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccccCCc
Q 011877 233 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 312 (475)
Q Consensus 233 aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~ll~~~~i~~~~l~~~~~d~~~~~~s~~g~~~~~~~~S 312 (475)
|||+||+|++|... +.++||||||++|+.+++++.++|+.....+ .|..++..+........||+|
T Consensus 234 DKKLEAsR~~f~~~-------------~~r~~DcVlT~~Ei~k~l~e~~~~l~~~~~~-~d~l~~~~~~~~~~~~~GgsS 299 (459)
T KOG2439|consen 234 DKKLEASREEFKEH-------------GVRDVDCVLTTGEIFKLLEELDFDLPVRDAE-VDTLPSGLSRETVTSNDGGSS 299 (459)
T ss_pred cHhhhccchhhhcc-------------CCcccceEeehHHHHHHHHhcCcccccccch-hhcccccccccceeeccCCCC
Confidence 99999999999622 4789999999999999999999999876544 555555555444455668999
Q ss_pred ccHHHHHHHHHHHHHhccccccccceeeecCCCcEEEEEEeCCeeEEEEEEEechHHHHHHHHHHHcCCCCCcEEEecCC
Q 011877 313 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 392 (475)
Q Consensus 313 GG~~e~v~r~~~~~l~~~~~~~~~~~~~~rn~d~~e~~l~~~g~~~~~~a~~~G~~ni~~ll~~lk~g~~~~dfIEvMAC 392 (475)
|||+++|+|++++++||..+. ++.++..||.||+|+|++-+|+.++++|.+||||||||+++++|+|+.+|||||||||
T Consensus 300 GGYa~~i~r~aak~lfg~~v~-~~t~k~~rN~Df~e~tl~~~geill~~a~~yGFRNiQNlvrklkk~k~pyhyvEVmAC 378 (459)
T KOG2439|consen 300 GGYAEHIFRHAAKELFGEIVE-PVTYKELRNSDFREVTLEKNGEILLRFAAAYGFRNIQNLVRKLKKGKFPYHYVEVMAC 378 (459)
T ss_pred cchHHHHHHHHHHHhcCCccc-chhhhhhccccceeeeeecCchHHHHHHHhhhhhHHHHHHHHHhccCCCcceeEEecc
Confidence 999999999999999999875 8889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcCCCCCCChHHHHHHHHHHHhhcccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeeecccccccccc
Q 011877 393 PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 472 (475)
Q Consensus 393 pgGCinGgGq~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~n~~v~~ly~~~l~~p~~~~~~~llhT~y~~~~~~~~~~~ 472 (475)
||||+|||||++.++...++++++++|++|.+.+. +.+...|.+.+||++|+.+ ++..++++|||+||+|++.++++.
T Consensus 379 pgGC~NGgGQl~~~~~~~~~~llq~ve~ly~e~~~-~~~e~~~~~~~L~E~w~k~-~~~~~r~~Lht~y~avek~~~sl~ 456 (459)
T KOG2439|consen 379 PGGCINGGGQLQTPDGHARKELLQQVEALYGEIPR-RRDESSPTVPKLEEEWLKG-DSKKARKVLHTDYQAVEKDVTSLG 456 (459)
T ss_pred CccccCCCccccCCccchHHHHHHHHHHhhccCcc-ccCccccchhHHHHHHHhc-Cchhhhhhhcccchhhhcchhhhc
Confidence 99999999999998878889999999999998776 4555668999999999987 778899999999999999999999
Q ss_pred CCC
Q 011877 473 HNW 475 (475)
Q Consensus 473 ~~w 475 (475)
+||
T Consensus 457 ~kW 459 (459)
T KOG2439|consen 457 NKW 459 (459)
T ss_pred cCC
Confidence 999
No 2
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=100.00 E-value=3e-91 Score=699.49 Aligned_cols=374 Identities=36% Similarity=0.654 Sum_probs=333.6
Q ss_pred CCCCceeeccccccccccchhhcccchhhhccHHHHHHhhcC---CCeEEEEeCcchhhhhhhhcCCChHhHH-HHHHHH
Q 011877 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINK---GKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTF 122 (475)
Q Consensus 47 ~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~---~k~vV~~iaP~~r~sl~~~fg~~~~~~~-~kl~~~ 122 (475)
...+++.+.++||++|++|+++||++++..+++..+++.|++ .+.+++++||++|++++..||++.+++. .++..|
T Consensus 24 ~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~~~~~~~le~~~~~k~v~v~~apsvR~al~~~~gl~~~~~~a~~~~~f 103 (411)
T COG4624 24 SMLEKISISLSDCLACSGCITSCEVKAISLQSGKKVLEELEDLFCDKIVLVSNAPSVRAALAEEFGLSEGEAVAVLMSFF 103 (411)
T ss_pred ecccccccchhhhhhhhccccCChHHhhhhcchHHHHHHhhccccceEEEecCCHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 678899999999999999999999999999999999999988 5889999999999999999999999887 888999
Q ss_pred HHHcCCcEEEechhhhhhhHHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHH
Q 011877 123 LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 202 (475)
Q Consensus 123 Lk~lGf~~V~Dts~gadi~~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P~Lip~LS~vkSPq~ 202 (475)
||++||++||||+||||++++|+++||.+|+++ +..+|||||||||||+|+||+| |+|+||||+||||||
T Consensus 104 ~k~~gf~~vvdt~fgad~vi~eea~Ef~~r~~~---------n~~lP~~tscCPgwV~~~Ekt~-P~Ll~~LS~vkSPQq 173 (411)
T COG4624 104 LKKLGFDKVVDTNFGADMVIMEEAAEFLERVKK---------NDDLPLFTSCCPGWVNYAEKTY-PNLLPNLSSVKSPQQ 173 (411)
T ss_pred HHHcChHhhhhhhhccchHHHHHHHHHHHHHhc---------CCCCceeeccChHHHHHHHHhh-HHHHhhccccCCHHH
Confidence 999999999999999999999999999999885 5789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEEecchhhHhhhchhhhhhccccccccccCCCCCCCceEEECHHHHHHHHHhcCC
Q 011877 203 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 282 (475)
Q Consensus 203 i~g~liK~~~~~~~~i~p~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~ll~~~~i 282 (475)
|+|+++|++|++++++.|+++||||||||+|||+||.|++- + + ++||+||||+||.+||+..+|
T Consensus 174 ~~g~~iK~~~~~~~~~~~e~~~~VsiMPC~aKK~Ea~r~~~--n-------------g-~~iD~vLTtrEL~~ml~~l~i 237 (411)
T COG4624 174 ALGSLIKTYYAEKLGIAPEDVYHVSIMPCIAKKLEADRDED--N-------------G-RAIDFVLTTRELVKMLKELRI 237 (411)
T ss_pred HHHHHHHHHhhhhcCCCccceeEEEEecchhhhhhhcCccc--c-------------C-cceeEEecHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999821 1 2 789999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccCCcccHHHHHHHHHHHHHhccccccccceeeecCCCcEEEEEEeCCeeEEEEE
Q 011877 283 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFA 362 (475)
Q Consensus 283 ~~~~l~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~v~r~~~~~l~~~~~~~~~~~~~~rn~d~~e~~l~~~g~~~~~~a 362 (475)
|+..+++.++|++.+..++++.+||. +|||++++.|. +.+.++.+ ..+.++.+| .+|++..+.+.|.. ++.+
T Consensus 238 d~~~lp~~~~~s~~g~~sga~~lfG~---tGgv~e~v~~~--~l~~~~~~-e~v~~~~~~-~gI~~~e~~l~g~~-~k~~ 309 (411)
T COG4624 238 DFARLPDGHYDSPAGFSSGAGLLFGS---TGGVMEAVLRT--RLLHDKHI-EAVDSEEVR-RGIQEAERKLGGSS-RKIA 309 (411)
T ss_pred CHhHCCCCCccccccccccccccCCC---cccEEEEeecc--ccccccch-hhhhhhhhh-ccchhhhhhccCcc-eeee
Confidence 99999999999999999999999887 99999999874 33334333 235566666 57888877777766 6999
Q ss_pred EEechHHHHHHHHHHHcCCCCCcEEEecCCcccccCCCCCcCCCCCCChHHHHHHHHHHHhhc--ccCCCCCCChHHHHH
Q 011877 363 LCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSL 440 (475)
Q Consensus 363 ~~~G~~ni~~ll~~lk~g~~~~dfIEvMACpgGCinGgGq~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~n~~v~~l 440 (475)
+++|.+|+++++++.+.+..+|||||||||||||||||||++... ....|....|..+ .+.+.++||+.+..+
T Consensus 310 vv~G~~n~~~~~~~~~~~~~~~~fiEvmACpGGCinGgGq~~~~~-----~~~~R~~~~~~~~~~~~~~~svd~~~~~k~ 384 (411)
T COG4624 310 VVEGVKNVRNFFKSTTADEYRYDFIEVMACPGGCINGGGQPYVER-----NDKERASVLQTKNGREPKLKSVDNLALKKM 384 (411)
T ss_pred eeehHHHHHHHHHhcccCCCcceEEEEeccCccccCCCCCcChhh-----hHHHHHHHHHhhhccCCceeecCcHHHHHH
Confidence 999999999999999999899999999999999999999999832 2223333444422 245788999999999
Q ss_pred HHHHhcCCCChhhhcceeeeee
Q 011877 441 YDEWLEQPGSEKAKKHVHTEYH 462 (475)
Q Consensus 441 y~~~l~~p~~~~~~~llhT~y~ 462 (475)
|++|+..| .+|++|||.|+
T Consensus 385 le~~~~~p---l~~e~lh~~y~ 403 (411)
T COG4624 385 LEEYVKDP---LSHELLHTKYK 403 (411)
T ss_pred HHHHhcCc---ccHHHhcchhh
Confidence 99999988 78999999999
No 3
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=100.00 E-value=5.8e-84 Score=669.74 Aligned_cols=325 Identities=36% Similarity=0.678 Sum_probs=299.3
Q ss_pred eeeccccccccccchhhcccchhhh-ccHHHHHHhhcCCCeE-EEEeCcchhhhhhhhcCCChHh-HHHHHHHHHHHcCC
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK-QSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGV 128 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~-~~~~~~~~~l~~~k~v-V~~iaP~~r~sl~~~fg~~~~~-~~~kl~~~Lk~lGf 128 (475)
..|+.++|+.||+|+++||+.++.. .++.++++.|++++.+ ++++||++++|+++.|+.+++. ..++|..+||+|||
T Consensus 45 ~~id~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~v~~~l~~~~~~~v~~~ap~~~~s~ge~~~~~~~~~~~~~l~~~lk~lGf 124 (374)
T TIGR02512 45 RLLDESNCIGCGQCSLVCPVGAITEKDHVDRVLKALADPKKVVVVQIAPAVRVALGEEFGMPIGTDVTGKMVAALRKLGF 124 (374)
T ss_pred cccCcccCcCccCHHHhCCCChhhhhccHHHHHHHhccccceEEEEeChHHHHHHHHHhCCCccchHHHHHHHHHHHcCC
Confidence 4688999999999999999988764 4578999999887555 9999999999999999988644 45899999999999
Q ss_pred cEEEechhhhhhhHHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHH
Q 011877 129 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 208 (475)
Q Consensus 129 ~~V~Dts~gadi~~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P~Lip~LS~vkSPq~i~g~li 208 (475)
++|+||++|+|+++.|++.||++|+++ +.++|||||||||||+||||+| |+|+||||+++|||+++|+++
T Consensus 125 ~~v~et~~~ad~~~~e~~~e~i~~~~~---------~~~~p~itS~CP~~v~~iek~~-P~li~~ls~v~SP~~~~g~~i 194 (374)
T TIGR02512 125 DYVFDTNFAADLTIMEEGTELLERLKN---------GGKLPMFTSCCPGWVNYAEKYY-PELLPNLSSCKSPQQMLGAVI 194 (374)
T ss_pred CEEEECcHHHHHHHHHHHHHHHHHhhc---------CCCCCeEecCCHHHHHHHHHHC-hhhhccccCCCChHHHHHHHH
Confidence 999999999999999999999999863 4557999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhCCCCCCeEEEEEEecchhhHhhhchhhhhhccccccccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCC
Q 011877 209 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 288 (475)
Q Consensus 209 K~~~~~~~~i~p~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~ll~~~~i~~~~l~ 288 (475)
|+++++..+++|++++|||||||+|||+||.|+++..+ +.++||+||||+||.+||++++|++.+++
T Consensus 195 K~~~~~~~~~~~~~i~~v~i~PC~aKK~Ea~r~~~~~~-------------~~~~vD~vlT~~El~~~~~~~~i~~~~~~ 261 (374)
T TIGR02512 195 KTYWAKKMGIDPEDVYVVSIMPCTAKKDEAQRPELKSD-------------GYRDVDAVLTTRELARMIKEAGIDFAKLP 261 (374)
T ss_pred HHHhHHHcCCCcccEEEEEEECcccchhhhcCchhccc-------------CCCcccEEeeHHHHHHHHHHcCCChhhCC
Confidence 99999999999999999999999999999999987432 24799999999999999999999999999
Q ss_pred CCcccccCCCCCCCCccccccCCcccHHHHHHHHHHHHHhccccccccceeeecCC-CcEEEEEEeCCeeEEEEEEEech
Q 011877 289 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGF 367 (475)
Q Consensus 289 ~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~v~r~~~~~l~~~~~~~~~~~~~~rn~-d~~e~~l~~~g~~~~~~a~~~G~ 367 (475)
+.++|.++...++.+++|+. ||||+++++|++++.++|.++ ..++|+.+||. |++|+++.++|. .+++++||||
T Consensus 262 ~~~~d~~~~~~~~~~~~f~~---sGG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~G~ 336 (374)
T TIGR02512 262 DSQFDSPFGEYSGAGAIFGA---TGGVMEAALRTAYEIVTGKEL-ELIEFKAVRGLDGVKEATVDIGGT-KVKVAVAHGL 336 (374)
T ss_pred CcccccccccCCccccccCC---cccHHHHHHHHHHHHhcCCCC-cccceeeecCCCCeEEEEEEECCE-EEEEEEEeCH
Confidence 99999988888889999998 999999999999999999776 56789999986 899999999994 4899999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEecCCcccccCCCCCcC
Q 011877 368 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 404 (475)
Q Consensus 368 ~ni~~ll~~lk~g~~~~dfIEvMACpgGCinGgGq~~ 404 (475)
+|+|++|+++++|+.+|+|||+|||||||+|||||++
T Consensus 337 ~~~~~~l~~~~~g~~~~~fiE~maC~gGCi~G~g~~~ 373 (374)
T TIGR02512 337 GNARKLLDDVKAGEADYHFIEVMACPGGCVNGGGQPK 373 (374)
T ss_pred HHHHHHHHHHHcCCCCccEEEECCCCccccCCCCccC
Confidence 9999999999999999999999999999999999986
No 4
>PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters. They can use molecular hydrogen for the reduction of a variety of substances.; PDB: 3LX4_A 1HFE_L 1GX7_A 1E08_A 1C4C_A 1FEH_A 3C8Y_A 1C4A_A.
Probab=100.00 E-value=1.9e-81 Score=628.88 Aligned_cols=284 Identities=44% Similarity=0.822 Sum_probs=245.2
Q ss_pred CeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEechhhhhhhHHHHHHHHHHHHhhcccCcccccCCCCC
Q 011877 90 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 169 (475)
Q Consensus 90 k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~Dts~gadi~~~e~~~E~~~r~~~~~~~~~~~~~~~~P 169 (475)
|++||+||||++++|+..|+++++++.++|.++||+|||++||||++|||+++.++++||++|+.+ ++++|
T Consensus 1 K~vva~iaPs~~~~f~~~~~~~~~~~~~~l~~~Lk~lGf~~V~d~a~gadl~~~~~~~e~~~~~~~---------~~~~p 71 (285)
T PF02906_consen 1 KKVVASIAPSFRAQFAEKFGLSPGEAPGQLVSALKKLGFDYVFDTAFGADLVILEEAEEFIERKEE---------GKPLP 71 (285)
T ss_dssp -EEEEEE-HHHHHTGGGGGT--TTSSHHHHHHHHHHTT-SEEEEHHHHHHHHHHHHHHHHHHHHCC---------TSSSS
T ss_pred CEEEEEECchhHHHHHhHhCcChhhHHHHHHHHHHHcCCCEEEECHHHHHHHHHHHHHHHHHhhcc---------cCCCc
Confidence 679999999999999999999999999999999999999999999999999999999999999863 45689
Q ss_pred ceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCeEEEEEEecchhhHhhhchhhhhhccc
Q 011877 170 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 249 (475)
Q Consensus 170 ~itS~CPgwV~yiEk~~~P~Lip~LS~vkSPq~i~g~liK~~~~~~~~i~p~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~ 249 (475)
||||||||||+||||+| |+|+||||+++|||+++|+++|+|++++.++.+.+++|||||||+|||+||.|+++..
T Consensus 72 ~itS~CP~~V~~iek~~-P~li~~ls~v~SP~~~~g~~~K~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~---- 146 (285)
T PF02906_consen 72 MITSCCPGWVCYIEKYY-PELIPNLSPVKSPMQIMGRLIKKYFAEESGIKPPDIYVVFIMPCIAKKLEASRPEFSG---- 146 (285)
T ss_dssp EE-TTSHHHHHHHHHH--GGGGGGB-SB-THHHHHHHHHTTHHHHHCT--GGGEEEEEEES-SHHHHHHTSTTCEC----
T ss_pred eEecccHHHHHHHHHhC-cccccccCCCccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEcCccccccccCccccC----
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999998732
Q ss_pred cccccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccccCCcccHHHHHHHHHHHHHhc
Q 011877 250 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 329 (475)
Q Consensus 250 ~~~~~~~~~~~~~~VD~VLT~~El~~ll~~~~i~~~~l~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~v~r~~~~~l~~ 329 (475)
+.++||+||||+||.+||++.+||+.++++.++|.++...++.+++|+. ||||+++++|++++.++|
T Consensus 147 ----------~~~~vD~VLT~~El~~~l~~~~i~~~~~~~~~~d~~~~~~s~~~~~f~~---sGG~~~~v~~~~~~~~~~ 213 (285)
T PF02906_consen 147 ----------GSPDVDYVLTFEELAELLKEKGIDLAELEPEPFDNPFGESSGAGRIFGS---SGGVAEAVLRYAAEKLFG 213 (285)
T ss_dssp ----------TCESSSEEEEHHHHHHHHHHTT--GGGSS--B--CTTSSSCHHHCCCCS---TTHHHHHHHHHHHHHHHS
T ss_pred ----------CCcccCEechHHHHHHHHHHcCCChhHCCCccccchHHHhhhhhhcccc---CchHHHHHHHHHHHHhcC
Confidence 2469999999999999999999999999999999988878888899887 999999999999999999
Q ss_pred cccccccceeeecCC-CcEEEEEEeCCeeEEEEEEEechHHHHHHHHHHHcCCCCCcEEEecCCcccccCCCCCc
Q 011877 330 KVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 403 (475)
Q Consensus 330 ~~~~~~~~~~~~rn~-d~~e~~l~~~g~~~~~~a~~~G~~ni~~ll~~lk~g~~~~dfIEvMACpgGCinGgGq~ 403 (475)
.++. .++++.+||. |++|+++.++. + ++++++|||+|+||+|+++|+|+.+|||||||||||||+|||||+
T Consensus 214 ~~~~-~~~~~~~r~~~~~~e~~~~~g~-~-~~~~~~~G~~n~~~~l~~ik~g~~~~~~iEvmaCpgGCinGgGq~ 285 (285)
T PF02906_consen 214 EDLP-NVEIEKVRGKEDIKEATVEIGK-E-LRFAVVYGFRNIQNLLRKIKKGKSEYDFIEVMACPGGCINGGGQP 285 (285)
T ss_dssp STTS--S--GGGTSSTSEEEEEEEETT-E-EEEEEEESHHHHHHHHHHHHTTSS--SEEEEESSTTSGGGCTTS-
T ss_pred CCCC-cceeEeccCCCCeEEEEEeccc-c-eEEEEecCHHHHHHHHHHhhccCCCCeEEEECCCCCcccCCCCCC
Confidence 8875 5889999996 89999999955 4 699999999999999999999999999999999999999999996
No 5
>PF02256 Fe_hyd_SSU: Iron hydrogenase small subunit; InterPro: IPR003149 Many microorganisms, such as methanogenic, acetogenic, nitrogen-fixing, photosynthetic, or sulphate-reducing bacteria, metabolise hydrogen. Hydrogen activation is mediated by a family of enzymes, termed hydrogenases, which either provide these organisms with reducing power from hydrogen oxidation, or act as electron sinks. There are two hydrogenases families that differ functionally from each other: NiFe hydrogenases tend to be more involved in hydrogen oxidation, while Iron-only FeFe (Fe only) hydrogenases in hydrogen production. Fe only hydrogenases (1.12.7.2 from EC) show a common core structure, which contains a moiety, deeply buried inside the protein, with an Fe-Fe dinuclear centre, nonproteic bridging, terminal CO and CN- ligands attached to each of the iron atoms, and a dithio moiety, which also bridges the two iron atoms and has been tentatively assigned as a di(thiomethyl)amine. This common core also harbours three [4Fe-4S] iron-sulphur clusters []. In FeFe hydrogenases, as in NiFe hydrogenases, the set of iron-sulphur clusters is dispersed regularly between the dinuclear Fe-Fe centre and the molecular surface. These clusters are distant by about 1.2 nm from each other but the [4Fe-4S] cluster closest to the dinuclear centre is covalently bound to one of the iron atoms though a thiolate bridging ligand. The moiety including the dinuclear centre, the thiolate bridging ligand, and the proximal [4Fe-4S] cluster is known as the H-cluster. A channel, lined with hydrophobic amino acid side chains, nearly connects the dinuclear centre and the molecular surface. Furthermore hydrogen-bonded water molecule sites have been identified at the interior and at the surface of the protein. The small subunit is comprised of alternating random coil and alpha helical structures that encompass the large subunit in a novel protein fold [].; PDB: 3LX4_A 1C4C_A 1FEH_A 3C8Y_A 1C4A_A 1HFE_S 1GX7_D 1E08_D.
Probab=99.35 E-value=2.7e-13 Score=104.87 Aligned_cols=54 Identities=39% Similarity=0.580 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhcc--cCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeeecc
Q 011877 411 PKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 464 (475)
Q Consensus 411 ~~~~~~~~~~~y~~~~--~~~~~~~n~~v~~ly~~~l~~p~~~~~~~llhT~y~~~ 464 (475)
.+.+.+|++++|..+. .++.|++||.|+.||++|||+|++++||+||||+|+++
T Consensus 4 ~~~~~~R~~~LY~~d~~~~~r~s~eNp~v~~lY~~~lg~p~s~~ah~lLHT~Y~~r 59 (60)
T PF02256_consen 4 KEIRLKRAEGLYNIDKSSPLRKSHENPEVQELYKEFLGGPGSEKAHELLHTHYHDR 59 (60)
T ss_dssp CCHHHHHHHHHHHHHHHTSB-SGGG-HHHHHHHHHTTSSTTSHHHHHHHB----T-
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHhCCCCchHHHHHhCcCccCC
Confidence 3578899999998664 67999999999999999999999999999999999987
No 6
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.31 E-value=6.3e-05 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=21.2
Q ss_pred ceeeccccccccccchhhcccchh
Q 011877 51 PVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
+++|+.+.|+.||.|+.+||..+|
T Consensus 1 ~~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 1 KVVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred CcEEChhhCcChhHHHHhcchhcC
Confidence 478999999999999999998654
No 7
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.28 E-value=0.00013 Score=81.68 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=58.3
Q ss_pred cccccccc-------cchhhcccchhhhccHHHHHHhh--cCCCeEEEEeCcchhhhhhhhcCCChHhHH-HHHHHHHHH
Q 011877 56 LKDCLACS-------GCITSAETVMLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKS 125 (475)
Q Consensus 56 ~~dCi~Cg-------~Cit~c~~~li~~~~~~~~~~~l--~~~k~vV~~iaP~~r~sl~~~fg~~~~~~~-~kl~~~Lk~ 125 (475)
..+|..|+ .|+.+||+.+|...+..++.... +..+.++++.||++|+++++.||+.++... .++...+|.
T Consensus 109 ~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~r~~~~~~~~~~R~ 188 (639)
T PRK12809 109 AQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASSDAQPSRSAALLPVNSRKGADKISASERK 188 (639)
T ss_pred cccccCCcccCCCCChhhhhCccceEEEechHHHHHHHHHhhhhhcccccCcccccchHHHhCCCccccCcccCCHHHHh
Confidence 34677776 47778887766544433333222 334678999999999999999998876554 889999999
Q ss_pred cCCcEEEec
Q 011877 126 LGVKSIFDT 134 (475)
Q Consensus 126 lGf~~V~Dt 134 (475)
++|++|++.
T Consensus 189 ~~f~Ev~~~ 197 (639)
T PRK12809 189 THFGEIYCG 197 (639)
T ss_pred cCHHHhhcc
Confidence 999999874
No 8
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.07 E-value=0.00021 Score=45.01 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=20.2
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.|+.+.|++||.|+..||+.+|+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 468899999999999999998763
No 9
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.11 E-value=0.0021 Score=39.57 Aligned_cols=20 Identities=25% Similarity=0.773 Sum_probs=17.9
Q ss_pred eeeccccccccccchhhccc
Q 011877 52 VKISLKDCLACSGCITSAET 71 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~ 71 (475)
..|+.++|++|+.|+.+||.
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 46899999999999999984
No 10
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=95.96 E-value=0.0027 Score=70.99 Aligned_cols=83 Identities=7% Similarity=-0.007 Sum_probs=48.6
Q ss_pred cccccchhhcccchhhhccHHHHHHhhcCCC-eEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHH-HcCCcEEEechhh
Q 011877 60 LACSGCITSAETVMLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKSIFDTSCS 137 (475)
Q Consensus 60 i~Cg~Cit~c~~~li~~~~~~~~~~~l~~~k-~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk-~lGf~~V~Dts~g 137 (475)
..||+||..||++++..+.+.-..+.+..++ +.|...+|..+.-....++........++...+. .+++ ...-||
T Consensus 187 e~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~~i~~d~r~~ev~ri~~r~n~~vNe~~~~---d~~RF~ 263 (693)
T COG1034 187 ELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGCNIRVDERYGEVRRILPRYNEVVNEEWLC---DKGRFA 263 (693)
T ss_pred ccccceeeeccccccccChHHhhhccchhccCceeeccCccccceeecccccchhhhcccchhHHHHHHhc---cccccc
Confidence 3455555578998887777744444554444 4455555554444444555444444444445554 4555 677788
Q ss_pred hhhhHHHH
Q 011877 138 RDLTLIEA 145 (475)
Q Consensus 138 adi~~~e~ 145 (475)
.|.+..++
T Consensus 264 ~d~~~~~~ 271 (693)
T COG1034 264 YDGLNLQR 271 (693)
T ss_pred ccccccch
Confidence 88887665
No 11
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.69 E-value=0.0043 Score=57.58 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=40.3
Q ss_pred CCCCCCCCCCccccccCCCCceeeccccccccccchhhcccchhhhccH
Q 011877 31 ATFKNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSL 79 (475)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~ 79 (475)
.+++....+++++|... ++.+.++.++||+||-|+.+||+++|...+.
T Consensus 57 edaPC~~vCP~~AI~~~-~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 57 EDAPCAEVCPVGAITRD-DGAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CCcchhhhCchhheeec-CCceEEchhhccCcchhhhcCCcceEEEEee
Confidence 34555566899999855 8999999999999999999999998876654
No 12
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=95.64 E-value=0.0051 Score=47.38 Aligned_cols=34 Identities=12% Similarity=0.414 Sum_probs=21.5
Q ss_pred cccccCCCCceeeccccccccccchhhccc-chhh
Q 011877 42 STSSKQQAEPVKISLKDCLACSGCITSAET-VMLE 75 (475)
Q Consensus 42 ~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~-~li~ 75 (475)
.++..++.+++.++.++|++||.|+.+||+ .+|+
T Consensus 24 ~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv~~AI~ 58 (59)
T PF14697_consen 24 DAIEVDEGKKVPVNPDKCIGCGLCVKVCPVKDAIT 58 (59)
T ss_dssp S-ECCTTTTSSECE-TT--S-SCCCCCSSSTTSEE
T ss_pred eeEEecCCeeEEeccccCcCcCcccccCCCccCCC
Confidence 344445566777888899999999999996 7764
No 13
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=95.02 E-value=0.01 Score=45.73 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=15.0
Q ss_pred eeeccccccccccchhhcccch
Q 011877 52 VKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
|.|+.++||+||.|+.+||..+
T Consensus 1 A~Id~~~Ci~Cg~C~~~Cp~~~ 22 (59)
T PF14697_consen 1 AVIDEDKCIGCGKCVRACPDGA 22 (59)
T ss_dssp EEE-TTT----SCCCHHCCCCS
T ss_pred CEECcccccChhhHHhHcCccc
Confidence 6899999999999999999753
No 14
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=94.96 E-value=0.012 Score=33.94 Aligned_cols=15 Identities=27% Similarity=0.979 Sum_probs=13.9
Q ss_pred ccccccccchhhccc
Q 011877 57 KDCLACSGCITSAET 71 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~ 71 (475)
+.|++|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 689999999999996
No 15
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=94.76 E-value=0.017 Score=58.16 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=36.0
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhhhc---cHHHHHHhhc
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ---SLDEFLSNIN 87 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~---~~~~~~~~l~ 87 (475)
|++.++... .-++|+.+.|++||+|.++||++++++. +.++|++.+.
T Consensus 205 cp~~Ai~~~--~~~~I~~~~ci~c~~c~~ac~~gav~~~W~~~~~~f~e~m~ 254 (354)
T COG2768 205 CPVGAITLT--KVVKIDYEKCIGCGQCMEACPYGAVDQNWEEDSPEFLERMA 254 (354)
T ss_pred CCCcceecc--cceeechhhccchhhhhhhccCcccccchhhccHHHHHHHH
Confidence 777777754 7789999999999999999999877654 3445655443
No 16
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=94.68 E-value=0.011 Score=50.29 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCccccccCC-CCceeeccccccccccchhhcccchhhhc
Q 011877 39 PQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 39 ~~~~~~~~~~-~~~a~I~~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
++..++.+++ +|.+.|+.+.|++||.|+.+||++++..+
T Consensus 21 CP~~Ai~~~~~~G~V~id~~~CigC~~C~~aCP~~ai~~~ 60 (98)
T PF13247_consen 21 CPTGAIYKDPEDGIVVIDEDKCIGCGYCVEACPYGAIRFD 60 (98)
T ss_dssp CTTTSEEEETTTS-EEE-TTTCCTHHHHHHH-TTS-EEEE
T ss_pred CCccceEEEcCCCeEEechhhccCchhhhhhhccCcceee
Confidence 6777777665 89999999999999999999999876543
No 17
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=94.66 E-value=0.035 Score=55.92 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=48.7
Q ss_pred Cceeeccccccccccchhhcccchhhh----ccHHHHHHhhcCCCeEEEEeCcchhhhhhhhcCCCh--HhHHHHHHHHH
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLEK----QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP--LQVFKKLTTFL 123 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~~----~~~~~~~~~l~~~k~vV~~iaP~~r~sl~~~fg~~~--~~~~~kl~~~L 123 (475)
..+.++...|..||.|+.+||+.++.. .+.+++++.+.......-.-.+. +.|.+ |-+. .+....|...+
T Consensus 75 ~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~~~t~eel~~~i~~~~~~~~~~~~~--V~~sG--GEPll~~~~l~~l~~~~ 150 (295)
T TIGR02494 75 NRIIIRREKCTHCGKCTEACPSGALSIVGEEMTVEEVMRVVLRDSIFYRNSGGG--VTLSG--GEPLLQPEFALALLQAC 150 (295)
T ss_pred cceeechhhcCchhHhhccCcHhHHhhhccCCcHHHHHHHHHHHHHhcccCCCc--EEeeC--cchhchHHHHHHHHHHH
Confidence 457788888999999999999876643 24667777665422111000010 11222 3221 12224677788
Q ss_pred HHcCCcEEEechh
Q 011877 124 KSLGVKSIFDTSC 136 (475)
Q Consensus 124 k~lGf~~V~Dts~ 136 (475)
|+.|+...++|+-
T Consensus 151 k~~g~~~~i~TnG 163 (295)
T TIGR02494 151 HERGIHTAVETSG 163 (295)
T ss_pred HHcCCcEeeeCCC
Confidence 8889888888873
No 18
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=94.39 E-value=0.018 Score=43.02 Aligned_cols=20 Identities=20% Similarity=0.762 Sum_probs=14.9
Q ss_pred ccccccccccchhhcccchh
Q 011877 55 SLKDCLACSGCITSAETVML 74 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li 74 (475)
..++|+.||.|+.+||+.+|
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 56789999999999999865
No 19
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.30 E-value=0.014 Score=32.64 Aligned_cols=15 Identities=27% Similarity=0.780 Sum_probs=13.4
Q ss_pred ccccccchhhcccch
Q 011877 59 CLACSGCITSAETVM 73 (475)
Q Consensus 59 Ci~Cg~Cit~c~~~l 73 (475)
|..||.|+.+||+.+
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999863
No 20
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=93.81 E-value=0.032 Score=47.24 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCccccccCCCCceeeccccccccccchhhcccch
Q 011877 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 38 ~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
.|+..++...+.+.+.|+.+.||.||.|+.+|+...
T Consensus 42 aCPagA~~~~e~G~V~vd~e~CigCg~C~~~C~~~~ 77 (95)
T PRK15449 42 ACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSA 77 (95)
T ss_pred HCCHhhcEeCCCCCEEEcCCCCCcchhhhhhcCCCC
Confidence 378888877789999999999999999999998753
No 21
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=93.71 E-value=0.026 Score=41.77 Aligned_cols=21 Identities=19% Similarity=0.691 Sum_probs=8.7
Q ss_pred ceeeccccccccccchhhccc
Q 011877 51 PVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
|+.|+.+.|+.||.|+.+||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 567899999999999999998
No 22
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=93.32 E-value=0.05 Score=52.24 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=35.4
Q ss_pred CCCCCCCccccccCC-CCceeeccccccccccchhhcccchhh
Q 011877 34 KNPDKPQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..-..|+..+.-+.+ +|-|.++.+.||+||-|+.+||.++..
T Consensus 76 pCv~vCPtgA~~k~~~dGiV~vd~d~CIGC~yCi~ACPyga~~ 118 (203)
T COG0437 76 PCVKVCPTGALFKREEDGIVLVDKDLCIGCGYCIAACPYGAPQ 118 (203)
T ss_pred cccccCCCcceEEecCCCEEEecCCcccCchHHHhhCCCCCce
Confidence 444568888777774 999999999999999999999998754
No 23
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.17 E-value=0.036 Score=44.06 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=18.3
Q ss_pred eeccccccccccchhhcccch
Q 011877 53 KISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~l 73 (475)
.-...+|++||.|+++||+.+
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred hcCCccCCCcChHhhhcCCCC
Confidence 347889999999999999874
No 24
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=93.07 E-value=0.04 Score=40.78 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=17.2
Q ss_pred Cceeeccccccccccchhhcccch
Q 011877 50 EPVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
..+.++.++|+.||.|+.+||+++
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp TTSEETGGG----SHHHHHTTTS-
T ss_pred eEEEEechhCcCcChhhhhCcCcC
Confidence 677899999999999999999863
No 25
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=93.02 E-value=0.037 Score=61.69 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCCceeeccccccccccchhhcccchhhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
-+...-|+++.|++||+||++||.+++-.
T Consensus 183 wd~~~~i~~SSCVsCG~CvtVCP~nALme 211 (978)
T COG3383 183 WDNDVPINESSCVSCGACVTVCPVNALME 211 (978)
T ss_pred cCCCCccccccccccCccceecchhhhhh
Confidence 45567789999999999999999975433
No 26
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=92.94 E-value=0.054 Score=46.23 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=24.8
Q ss_pred CCCceeeccccccccccchhhcccchhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.+..+.|+.+.|++||.|+.+||+.++.
T Consensus 7 ~~~~v~id~~~Ci~C~~Cv~aCP~~ai~ 34 (103)
T PRK09626 7 DNTPVWVDESRCKACDICVSVCPAGVLA 34 (103)
T ss_pred CCCCeEECcccccCCcchhhhcChhhhc
Confidence 5688999999999999999999987654
No 27
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=92.79 E-value=0.048 Score=51.12 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCCceeeccccccccccchhhcccchhhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
+...-.|+..+||.||-|+.+||+.+|..
T Consensus 86 ~~~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 86 KPKRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred ccccceeccccccccCchhhhCchhhhcC
Confidence 34578899999999999999999987643
No 28
>PRK13409 putative ATPase RIL; Provisional
Probab=92.70 E-value=0.043 Score=61.05 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCCCceeeccccccccccchhhcccchhhhccHHH
Q 011877 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLDE 81 (475)
Q Consensus 47 ~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~~ 81 (475)
...+++.|+++-|++||-||..||+.+|+--++.+
T Consensus 39 ~~~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 39 EDDGKPVISEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred CCCCCceeeHhhccccccccccCCcceEEEeeCch
Confidence 46789999999999999999999998877655443
No 29
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=92.53 E-value=0.061 Score=39.71 Aligned_cols=25 Identities=20% Similarity=0.659 Sum_probs=17.5
Q ss_pred cCCCCceeeccccccccccchhhcc
Q 011877 46 KQQAEPVKISLKDCLACSGCITSAE 70 (475)
Q Consensus 46 ~~~~~~a~I~~~dCi~Cg~Cit~c~ 70 (475)
....+...++..+|+.||.|+.+||
T Consensus 28 ~~~~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 28 DDGEKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp EE-SSSEEE-TTT--TTSHHHHH-T
T ss_pred hccCCCeEeCcccccccChhhhhCc
Confidence 3466788899999999999999998
No 30
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=92.49 E-value=0.073 Score=47.76 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=12.3
Q ss_pred ceeeccccccccccchhhcccch
Q 011877 51 PVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
+..++.+.|++||.|+.+||..+
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~a 75 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAA 75 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhh
Confidence 44455555555555555555443
No 31
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=92.11 E-value=0.071 Score=45.88 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=24.3
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++...+.....+.+.|+..+|+.||.|+.+||+.+|.
T Consensus 63 CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~ 99 (105)
T PRK09624 63 CPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIE 99 (105)
T ss_pred CCHhhEEecCCCcEEECchhCCCcCchhhhcCcCcEE
Confidence 4444444334445667778888888888888876654
No 32
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=91.64 E-value=0.064 Score=57.17 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=28.4
Q ss_pred CCCceeeccccccccccchhhcccchhhhccHHH
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLEKQSLDE 81 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~~ 81 (475)
..++..|+++-|++||-||..||+.+|+--++.+
T Consensus 41 ~~gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 41 DTGKPVISEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred CCCCceeEhhhhccchhhhccCCcceEEEecCch
Confidence 3567799999999999999999999887655443
No 33
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=91.25 E-value=0.089 Score=43.49 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=21.8
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...+..+.|+.||.|+.+||+.+|..
T Consensus 23 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 23 KLVIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred eEEeCccccCCCCCchhhCCHHHhhc
Confidence 44678888999999999999987654
No 34
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=91.19 E-value=0.076 Score=49.81 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=26.1
Q ss_pred CCCCceeeccccccccccchhhcccchhhhcc
Q 011877 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQS 78 (475)
Q Consensus 47 ~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~ 78 (475)
.--|...++-++||+|+.|.++||+.+|....
T Consensus 45 rfRG~~~l~~~~CIgC~lCa~iCP~~aI~m~~ 76 (172)
T COG1143 45 RFRGRHVLDRDKCIGCGLCANICPANAITMET 76 (172)
T ss_pred CccceeeccccCCcchhHHHhhCCcCceEEEE
Confidence 34567778888899999999999998876543
No 35
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=90.86 E-value=0.1 Score=45.71 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCCceeeccccccccccchhhcccchhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
-.+.+.++.++|++||.|+.+||..++.
T Consensus 33 ~~g~i~i~~~~Ci~C~~C~~~CP~~ai~ 60 (120)
T PRK08348 33 FRGKILYDVDKCVGCRMCVTVCPAGVFV 60 (120)
T ss_pred ccceEEECcccCcCcccHHHHCCccceE
Confidence 3467899999999999999999987654
No 36
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=90.81 E-value=0.086 Score=43.55 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=21.1
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..++..+|+.||.|+.+||+.+|.
T Consensus 65 ~~i~~~~C~~Cg~C~~~CP~~AI~ 88 (91)
T TIGR02936 65 VVANPGNCIGCGACARVCPKKCQT 88 (91)
T ss_pred eecCCccCcChhhhhhhCCHhHEe
Confidence 357899999999999999998764
No 37
>PRK08764 ferredoxin; Provisional
Probab=90.81 E-value=0.13 Score=46.12 Aligned_cols=20 Identities=25% Similarity=0.717 Sum_probs=11.9
Q ss_pred ccccccccccchhhcccchh
Q 011877 55 SLKDCLACSGCITSAETVML 74 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li 74 (475)
..+.|+.|+.|+.+||+.+|
T Consensus 83 ~~~~Ci~C~~Cv~aCp~~ai 102 (135)
T PRK08764 83 VEADCIGCTKCIQACPVDAI 102 (135)
T ss_pred CcccCcCcchHHHhCChhhc
Confidence 44566666666666665443
No 38
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=90.67 E-value=0.11 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=12.7
Q ss_pred ceeeccccccccccchhhcccchh
Q 011877 51 PVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
...++.++|+.||.|+.+||+.+|
T Consensus 138 ~~~v~~~~C~~Cg~Cv~vCP~~AI 161 (191)
T PRK05113 138 MHTVISDLCTGCDLCVAPCPTDCI 161 (191)
T ss_pred ceeecCCcCCchHHHHHHcCcCce
Confidence 334455555555555555555444
No 39
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=90.42 E-value=0.14 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=19.1
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..+...+|+.||.|+.+||+.+|..
T Consensus 68 ~~~~~~~C~~Cg~C~~~CPt~AI~~ 92 (181)
T PRK08222 68 WQLYLGRCIYCGRCEEVCPTRAIQL 92 (181)
T ss_pred eeeccCcCcCCCCcccccCcCeEEe
Confidence 4566788888888888888876653
No 40
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=90.31 E-value=0.1 Score=43.04 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCceeeccccccccccchhhcccchhhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..-.+.|+.+.|++||.|+.+||..++..
T Consensus 12 ~~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~ 40 (91)
T TIGR02936 12 PQFVTSIDQEKCIGCGRCYKVCGRDVLTL 40 (91)
T ss_pred cceeEEECHhHCCCcchHHHHcChhhcee
Confidence 34467899999999999999999876543
No 41
>PRK06991 ferredoxin; Provisional
Probab=90.24 E-value=0.11 Score=52.15 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=18.2
Q ss_pred Cceeeccccccccccchhhcccchh
Q 011877 50 EPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
..+.|+.+.|+.||.|+.+||+.+|
T Consensus 78 ~~~~id~~~CigCg~Cv~aCP~~AI 102 (270)
T PRK06991 78 AVAVIDEQLCIGCTLCMQACPVDAI 102 (270)
T ss_pred ceeEEccccCCCCcHHHHhCCHhhe
Confidence 3456777778888888888887655
No 42
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=90.19 E-value=0.13 Score=40.14 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=19.4
Q ss_pred eeeccccccccccchhhcccch
Q 011877 52 VKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
+.|+.++|++||.|+..||.+.
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF 22 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVF 22 (65)
T ss_pred CEEecccCcCccHHHhhCCccE
Confidence 4789999999999999999763
No 43
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=90.19 E-value=0.11 Score=53.01 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=22.9
Q ss_pred CCccccccC-CCCceeeccccccccccchhhcccchh
Q 011877 39 PQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 39 ~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
|+..++.+. .++.+.|+.++|+.|+.|+.+||+.++
T Consensus 143 CPtgAI~k~eedGiV~ID~ekCiGCg~Cv~ACPygAi 179 (321)
T TIGR03478 143 CPTGAIYKREEDGIVLVDQERCKGYRYCVEACPYKKV 179 (321)
T ss_pred CCcCcEEEecCCCeEEECHHHCcchHHHHHhCCCCCc
Confidence 455555322 346667777777777777777777654
No 44
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=90.03 E-value=0.13 Score=54.94 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCCCcccccc-CCCCceeeccccccccccchhhcccchhhh
Q 011877 37 DKPQVSTSSK-QQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 37 ~~~~~~~~~~-~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..|+..++.+ ..++.+.|+.+.|++|+.|+.+||+.++..
T Consensus 193 ~ACPtGAI~k~eedGiV~ID~dkCiGCg~CV~ACPygAI~~ 233 (492)
T TIGR01660 193 ASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYF 233 (492)
T ss_pred hhCccCCeEEecCCCeEEEehhhccChHHHHHhCCCCCcEe
Confidence 3467777764 356788999999999999999999987643
No 45
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=89.96 E-value=0.12 Score=41.00 Aligned_cols=23 Identities=26% Similarity=0.729 Sum_probs=20.3
Q ss_pred ceeeccccccccccchhhcccch
Q 011877 51 PVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
++.|+.+.||+||.|.+.||.+.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVF 24 (68)
T ss_pred EEEechhhccccchhhhcCCcce
Confidence 57788899999999999999764
No 46
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=89.77 E-value=0.21 Score=40.05 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=11.2
Q ss_pred eeeccccccccccchhhcccch
Q 011877 52 VKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
..++...|+.|+.|+.+||+.+
T Consensus 50 ~~i~~~~C~~C~~C~~~CP~~A 71 (78)
T TIGR02179 50 VGIDYDYCKGCGICANVCPVKA 71 (78)
T ss_pred EEecCccCcCccchhhhCCccc
Confidence 4444455555555555555543
No 47
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=89.73 E-value=0.16 Score=47.17 Aligned_cols=26 Identities=19% Similarity=0.532 Sum_probs=17.6
Q ss_pred CCceeeccccccccccchhhcccchh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
...+.++.+.|+.||.|+.+||+.++
T Consensus 105 ~~~~~id~~~Ci~Cg~C~~aCp~~ai 130 (165)
T TIGR01944 105 PMVALIDEDNCIGCTKCIQACPVDAI 130 (165)
T ss_pred CceEEEECCcCCChhHHHHhCCccce
Confidence 34466777777777777777776544
No 48
>CHL00065 psaC photosystem I subunit VII
Probab=88.99 E-value=0.18 Score=40.94 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=20.4
Q ss_pred Cceeeccccccccccchhhcccchhhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
+++.+..+.|++||.|+.+||+.++..
T Consensus 2 ~~~~~~~~~Ci~Cg~C~~~CP~~~i~~ 28 (81)
T CHL00065 2 SHSVKIYDTCIGCTQCVRACPTDVLEM 28 (81)
T ss_pred CCccCccccCCChhHHHHHCCccchhh
Confidence 345667788999999999999765543
No 49
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=88.93 E-value=0.17 Score=47.89 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=11.1
Q ss_pred eeeccccccccccchhhcccch
Q 011877 52 VKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
..|+...|+.||.|+.+||+.+
T Consensus 97 ~~id~~~Ci~Cg~Cv~aCP~~A 118 (183)
T TIGR00403 97 YSIDFGVCIFCGNCVEYCPTNC 118 (183)
T ss_pred eecCcccccCcCchhhhcCCCC
Confidence 3444455555555555555543
No 50
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=88.87 E-value=0.13 Score=38.18 Aligned_cols=19 Identities=21% Similarity=0.758 Sum_probs=13.8
Q ss_pred cccccccchhhcccchhhh
Q 011877 58 DCLACSGCITSAETVMLEK 76 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~ 76 (475)
+|++||.|+.+||..++..
T Consensus 1 kCi~Cg~C~~~CP~~~~~~ 19 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEF 19 (55)
T ss_dssp C--TTTHHHHHSTTT-EEE
T ss_pred CCCCcchHHHHCCccCeEc
Confidence 6999999999999986544
No 51
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=88.87 E-value=0.19 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=11.0
Q ss_pred eeeccccccccccchhhcccch
Q 011877 52 VKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
+.|+..+|..||.|+.+||+.+
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09623 76 VAIDYDYCKGCGICANECPTKA 97 (105)
T ss_pred EEeCchhCcCcchhhhhcCcCc
Confidence 4444455555555555555443
No 52
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=88.67 E-value=0.14 Score=46.08 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCCccccccCCC--CceeeccccccccccchhhcccchhhhccHHH
Q 011877 37 DKPQVSTSSKQQA--EPVKISLKDCLACSGCITSAETVMLEKQSLDE 81 (475)
Q Consensus 37 ~~~~~~~~~~~~~--~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~~ 81 (475)
..|+...+..... ....|+...|+.||.|+.+||+.+|......+
T Consensus 23 ~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~~ 69 (132)
T TIGR02060 23 YICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQGAIDVRGYAD 69 (132)
T ss_pred hhcCccceEecCCCceeeecCchhCccHHHHHHhCCcCceEEECccc
Confidence 3455555442222 22358889999999999999998776544333
No 53
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=88.46 E-value=0.22 Score=47.16 Aligned_cols=26 Identities=15% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCceeeccccccccccchhhcccchh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
-+.+.+..++|++||.|+.+||..++
T Consensus 54 rG~i~~~~~kCi~Cg~C~~aCP~~ai 79 (183)
T TIGR00403 54 RGRIHFEFDKCIACEVCVRVCPINLP 79 (183)
T ss_pred cceEEeCcccCcCcCChhhhCCCCcc
Confidence 46788999999999999999999764
No 54
>COG1146 Ferredoxin [Energy production and conversion]
Probab=88.39 E-value=0.2 Score=39.28 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCceeeccccccccccchhhcccchhhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...+.+..++|+.||.|+..||..+|..
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~aI~~ 60 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVGAIKV 60 (68)
T ss_pred cceeEeccccCccchhhhhhCCcceEEE
Confidence 5568888999999999999999987643
No 55
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=88.29 E-value=0.19 Score=49.23 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=27.5
Q ss_pred ccccccccccchhhcccchhhhccHHHHHHhhcCCCeEEEEeCc
Q 011877 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSP 98 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~~k~vV~~iaP 98 (475)
+...|+.||.|+.+||+++|...+. .+.+.+....++ +++.|
T Consensus 188 ~~~~C~~Cg~Cv~vCP~gAL~~~~~-~~~~~~~~~~~~-~~~~~ 229 (234)
T PRK07569 188 TSETCTSCGKCVQACPTGAIFRKGS-TVGEMEKDRDKL-EFLVT 229 (234)
T ss_pred ccccccchHHHHHhCCCCcEEecCC-cHHHhhcCcccc-ccccc
Confidence 3468999999999999998876554 344444443343 33444
No 56
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=88.24 E-value=0.24 Score=43.35 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=27.1
Q ss_pred CCccccccC-CCCceeeccccccccccchhhcccchhhh
Q 011877 39 PQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 39 ~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
|+...+... ......++..+|+.||.|+.+||+.++..
T Consensus 54 CP~~ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~ 92 (120)
T PRK08348 54 CPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQM 92 (120)
T ss_pred CCccceEccccccceEecCCcCcChhhhHHhCCcCcEEe
Confidence 444444322 23456788899999999999999987654
No 57
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=88.00 E-value=0.33 Score=41.30 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=21.2
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...++..+|+.||.|+.+||+.+|..
T Consensus 60 ~~~i~~~~C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 60 TVEFDNAECDFCGKCAEACPTNAFHP 85 (101)
T ss_pred eeEecCccCcCccChhhHCCccccCc
Confidence 35678889999999999999887643
No 58
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=87.95 E-value=0.24 Score=50.47 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCCCccccccCCCCceeeccccccccccchhhcccc
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
..|+..++.-.. .++.|+.+.|+.||.|+.+||-.
T Consensus 182 ~~C~~gAI~~~~-~~l~id~~~Ci~Cg~Ci~~Cp~~ 216 (317)
T COG2221 182 KVCPTGAITWDG-KKLKIDGSKCIGCGKCIRACPKA 216 (317)
T ss_pred HhCCCCceeecc-ceEEEehhhccCccHHhhhCChh
Confidence 347777777433 88999999999999999999943
No 59
>PLN00071 photosystem I subunit VII; Provisional
Probab=87.93 E-value=0.22 Score=40.29 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=21.1
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...+..+.|++||.|+.+||+.+++.
T Consensus 3 ~~~~~~~~C~~C~~C~~~CP~~~i~~ 28 (81)
T PLN00071 3 HPVKIYDTCIGCTQCVRACPTDVLEM 28 (81)
T ss_pred CCeEcCCcCcChhHHHHHCCccceee
Confidence 35677889999999999999876543
No 60
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=87.91 E-value=0.24 Score=51.39 Aligned_cols=28 Identities=14% Similarity=0.571 Sum_probs=24.5
Q ss_pred CCCceeeccccccccccchhhcccchhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..+++.|+.+.|+.||.|+.+||+.++.
T Consensus 205 ~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 205 KNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred CCCceeeccccCCcCCchHHhCchhhcc
Confidence 3578999999999999999999987653
No 61
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=87.57 E-value=0.22 Score=49.32 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCCCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..|+..++.+...+.+.|+.+.|++|+.|+.+||+.++.
T Consensus 110 ~~CP~~Ai~~~~~G~v~id~~~CigC~~Cv~aCP~~Ai~ 148 (244)
T PRK14993 110 PVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARF 148 (244)
T ss_pred cccCCCCEEECCCCCEEEcHHHCCCHHHHHHhcCCCCCE
Confidence 345555554455677788888888888888888887654
No 62
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=87.25 E-value=0.24 Score=37.90 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=12.9
Q ss_pred eccccccccccchhhcccch
Q 011877 54 ISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~l 73 (475)
|+.+.|++||.|+..||.+.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF 20 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVF 20 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTE
T ss_pred CChhhCcCCChHHHhCcHhe
Confidence 56789999999999999764
No 63
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=87.21 E-value=0.28 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCceeeccccccccccchhhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++++.|+.+.|+.||.|+.+||+.++.
T Consensus 193 ~~~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 193 NYKVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred CCeEEeCCCcCcCcchhhhhCCHhhcc
Confidence 457888889999999999999987654
No 64
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=87.05 E-value=0.23 Score=46.88 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCceeeccccccccccchhhcccchhhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
-++..++.+.|++||.|+.+||+.++..
T Consensus 30 rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~ 57 (181)
T PRK08222 30 RGKPDLMPSQCIACGACTCACPANALTI 57 (181)
T ss_pred cCceEeChhhCcchhHHHHhCCccceEc
Confidence 4778899999999999999999987653
No 65
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=86.63 E-value=0.34 Score=45.11 Aligned_cols=26 Identities=15% Similarity=0.528 Sum_probs=22.3
Q ss_pred CCceeeccccccccccchhhcccchh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
.+.+.+..++|++||.|+.+||..++
T Consensus 51 rg~i~~~~~~Ci~Cg~C~~aCP~~~~ 76 (167)
T CHL00014 51 RGRIHFEFDKCIACEVCVRVCPIDLP 76 (167)
T ss_pred CCeEEeccccCCCcCcHHHhCCCCCc
Confidence 45677889999999999999998753
No 66
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=86.44 E-value=0.29 Score=49.52 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCCCCCc-cccccCCCCceeeccccccccccchhhcccchhh
Q 011877 35 NPDKPQV-STSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 35 ~~~~~~~-~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+...|+. .++....++.+.++.+.|+.|+.|+.+||+.++.
T Consensus 101 Cv~aCP~~gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~a~~ 142 (283)
T TIGR01582 101 CLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFNIPR 142 (283)
T ss_pred ccCCCCcCCeEEEcCCCcEEEeHHHCCcchHHHhhCCCCCcE
Confidence 3344664 4454456778888899999999999999987654
No 67
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=86.34 E-value=0.22 Score=36.79 Aligned_cols=20 Identities=20% Similarity=0.730 Sum_probs=13.1
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
+|++||.|+.+||+.+|...
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~ 20 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLD 20 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEE
T ss_pred CCCCcCchHHhcCccccCcc
Confidence 59999999999999876543
No 68
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=86.03 E-value=0.3 Score=39.11 Aligned_cols=25 Identities=12% Similarity=0.426 Sum_probs=21.5
Q ss_pred ceeeccccccccccchhhcccchhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+..|+.++|++|+.|+.+||..++.
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~ 43 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQ 43 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceE
Confidence 4678889999999999999987554
No 69
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=85.90 E-value=0.48 Score=44.58 Aligned_cols=24 Identities=13% Similarity=0.570 Sum_probs=11.8
Q ss_pred Cceeeccccccccccchhhcccch
Q 011877 50 EPVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
++..++.+.|++||.|+.+||+.+
T Consensus 31 g~p~~d~~~C~~C~~Cv~~CP~~a 54 (180)
T PRK12387 31 GKPEYNPQQCIGCAACVNACPSNA 54 (180)
T ss_pred CceEEChhhCcChhHHHHhcCccC
Confidence 344445555555555555555443
No 70
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=85.72 E-value=0.45 Score=50.50 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=27.2
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccch
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
|+...+.-+...+..|+.++|+.|+.||.+||..+
T Consensus 254 Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a~ 288 (402)
T TIGR02064 254 CPTKAISWDGSKELSIDNRECVRCMHCINKMPKAL 288 (402)
T ss_pred CCccccccCCCceEEEcchhcCcCccccccCcccc
Confidence 55555554333389999999999999999999854
No 71
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=85.67 E-value=0.38 Score=46.95 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCccccccC-CCCceeeccccccccccchhhcccchh
Q 011877 38 KPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 38 ~~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
.|+..++... ..+.+.|+.+.|+.||.|+.+||+.++
T Consensus 105 ~CP~gAi~~~~~~g~v~id~~~C~~C~~C~~aCP~~A~ 142 (225)
T TIGR03149 105 VCPTGASFKDEETGIVDVHKDLCVGCQYCIAACPYRVR 142 (225)
T ss_pred hCCCCcEEEeCCCCeEEechhhCCcchHHHHhCCCCCc
Confidence 3555555433 345677777788888888888887754
No 72
>CHL00065 psaC photosystem I subunit VII
Probab=85.45 E-value=0.31 Score=39.54 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=20.0
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.++...|+.||.|+.+||+.+|+.
T Consensus 42 ~~~~~~C~~C~~C~~~CP~~Ai~~ 65 (81)
T CHL00065 42 APRTEDCVGCKRCESACPTDFLSV 65 (81)
T ss_pred cCCCCcCCChhhhhhhcCccccEE
Confidence 455688999999999999987653
No 73
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=85.43 E-value=0.36 Score=47.99 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCceeeccccccccccchhhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.+...++..+|+.||.|+.+||+.+++
T Consensus 226 ~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~ 252 (255)
T TIGR02163 226 GGSTLVLSGDCTLCGRCIDVCHEDVLG 252 (255)
T ss_pred CCceEeccccccchhHHHHhCCccccc
Confidence 355678889999999999999998664
No 74
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=85.38 E-value=0.33 Score=44.89 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=23.7
Q ss_pred CCCceeeccccccccccchhhcccchhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
....-.|+...||.||-|+..||+.+|.
T Consensus 141 RttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 141 RTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred cceeecccceeeeeecchhhhCCcccee
Confidence 4556789999999999999999997653
No 75
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=85.36 E-value=0.29 Score=45.58 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=21.9
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...|+..+|+.||.|+.+||+.++..
T Consensus 93 ~~~id~~~C~~Cg~C~~~CP~~AI~~ 118 (167)
T CHL00014 93 NYSIDFGVCIFCGNCVEYCPTNCLSM 118 (167)
T ss_pred cccCCCCcCcCccchHhhcCcCceec
Confidence 56678889999999999999986643
No 76
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=85.26 E-value=0.38 Score=38.92 Aligned_cols=24 Identities=25% Similarity=0.625 Sum_probs=19.6
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+....+.|++||.|+.+||..++.
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~~~i~ 26 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPTDVLE 26 (80)
T ss_pred ceecCCcCcCcchHHHHCCcccee
Confidence 455678999999999999987554
No 77
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=84.88 E-value=0.44 Score=44.10 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=20.6
Q ss_pred Cceeeccc-----cccccccchhhcccchhh
Q 011877 50 EPVKISLK-----DCLACSGCITSAETVMLE 75 (475)
Q Consensus 50 ~~a~I~~~-----dCi~Cg~Cit~c~~~li~ 75 (475)
+.+.++.+ .|++||.|+.+||..++.
T Consensus 46 g~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~ 76 (164)
T PRK05888 46 GRHALRRDPNGEERCIACKLCAAICPADAIT 76 (164)
T ss_pred CEEeecCCCCCCccCCcccChHHHcCccccc
Confidence 44555555 999999999999987654
No 78
>PRK06273 ferredoxin; Provisional
Probab=84.80 E-value=0.42 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred ceeeccccccccccchhhcccchh
Q 011877 51 PVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
...|+..+|+.||.|+.+||+.++
T Consensus 85 ~~~Id~~kCi~Cg~C~~aCP~~AI 108 (165)
T PRK06273 85 IPKIDYEKCVYCLYCHDFCPVFAL 108 (165)
T ss_pred ceecccccCcCCCCcchhCCHhhe
Confidence 457889999999999999999865
No 79
>PRK02651 photosystem I subunit VII; Provisional
Probab=84.75 E-value=0.4 Score=38.68 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=18.7
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+....++|+.||.|+.+||+..+.
T Consensus 4 ~~~~~~~Ci~C~~C~~~CP~~~i~ 27 (81)
T PRK02651 4 AVKIYDTCIGCTQCVRACPLDVLE 27 (81)
T ss_pred cccccccCCCcchHHHHCCcccee
Confidence 334468999999999999976554
No 80
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=84.68 E-value=0.47 Score=39.62 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCccccccCCCCcee-eccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVK-ISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~-I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|+...+...+++... |+.+.|-+||-|+.+||+.+|+
T Consensus 47 CPe~~i~~~~~~~~~~idYdyCKGCGICa~vCP~kaI~ 84 (91)
T COG1144 47 CPEPAILEEEGGYKVRIDYDYCKGCGICANVCPVKAIE 84 (91)
T ss_pred CCchheeeccCCccceeEcccccCceechhhCChhheE
Confidence 454555544444333 8889999999999999987654
No 81
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=84.59 E-value=0.55 Score=47.12 Aligned_cols=24 Identities=21% Similarity=0.650 Sum_probs=20.2
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.++..+|+.||.|+.+||+.+++-
T Consensus 238 ~i~~~~C~~Cg~Cv~~CP~~Ai~~ 261 (271)
T PRK09477 238 QVTSGDCITCGRCIDVCSEDVFNF 261 (271)
T ss_pred eeCcccCcChhHHHhhcCccceee
Confidence 478889999999999999877653
No 82
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=84.42 E-value=0.35 Score=43.35 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=18.9
Q ss_pred eeccccccccccchhhcccchh
Q 011877 53 KISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li 74 (475)
.|+..+|+.||.|+.+||+.++
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~a~ 106 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTNPK 106 (133)
T ss_pred EeCcCcCcChhHHHHHCCcCce
Confidence 4677899999999999999753
No 83
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=84.41 E-value=0.49 Score=47.62 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=24.7
Q ss_pred CCCceeeccccccccccchhhcccchhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..+.+.++.+.|++||.|+.+||..++.
T Consensus 39 ~~~~~~~~~~~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 39 KSPELLFKENRCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred CCceEEEccccCCCCchhhhhCcccccc
Confidence 4678899999999999999999988654
No 84
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=84.30 E-value=0.45 Score=44.03 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.4
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..++...|+.||.|+.+||+.+|..
T Consensus 92 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~ 116 (164)
T PRK05888 92 YDINFGRCIFCGFCEEACPTDAIVE 116 (164)
T ss_pred eecCCCcCcccCcchhhcCcCccee
Confidence 5588899999999999999986643
No 85
>PRK06273 ferredoxin; Provisional
Probab=84.14 E-value=0.38 Score=44.83 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=22.6
Q ss_pred Cceeeccccccccccchhhcccchhhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
....++.+.|++||.|+.+||..+|..
T Consensus 42 ~~~~id~~~CigCg~C~~aCP~~AI~~ 68 (165)
T PRK06273 42 LPKKVFEELCIGCGGCANVCPTKAIEM 68 (165)
T ss_pred CCCeECchhCcChhHHHHhcCccceee
Confidence 455788999999999999999986643
No 86
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=84.10 E-value=0.51 Score=41.16 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.1
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..+...+|+.||.|+.+||+.++..
T Consensus 77 ~~~~~~~C~~Cg~Cv~~CP~~al~~ 101 (122)
T TIGR01971 77 YQINFGRCIFCGLCEEACPTDAIVL 101 (122)
T ss_pred ceECcccCCCCCchhhhCCCccccc
Confidence 5678899999999999999976543
No 87
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=84.04 E-value=0.45 Score=41.53 Aligned_cols=26 Identities=12% Similarity=0.480 Sum_probs=20.0
Q ss_pred Cceeecc-----ccccccccchhhcccchhh
Q 011877 50 EPVKISL-----KDCLACSGCITSAETVMLE 75 (475)
Q Consensus 50 ~~a~I~~-----~dCi~Cg~Cit~c~~~li~ 75 (475)
+...+.. +.|++||.|+.+||+.++.
T Consensus 31 g~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~ 61 (122)
T TIGR01971 31 GRIVLTRDPNGEEKCIGCTLCAAVCPADAIR 61 (122)
T ss_pred CeEeeccCCCCcCcCcCcchhhhhcCHhHee
Confidence 4445544 9999999999999976543
No 88
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=83.99 E-value=0.51 Score=38.85 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCCccccccCC----CCceeeccccccccccchhhcccchhhh
Q 011877 38 KPQVSTSSKQQ----AEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 38 ~~~~~~~~~~~----~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.++..++.... ...+.|+.+.|+.||.|+.+||+.+++.
T Consensus 40 ~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~ 82 (99)
T COG1145 40 VCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSI 82 (99)
T ss_pred hCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeeh
Confidence 45655554322 4788999999999999999999987543
No 89
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=83.28 E-value=0.46 Score=49.11 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=19.6
Q ss_pred CCccccccCC-CCceeeccccccccccchhhcccchh
Q 011877 39 PQVSTSSKQQ-AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 39 ~~~~~~~~~~-~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
|+...+.+.. .+.+.++.+.|+.|+.|+.+||+.++
T Consensus 124 CP~gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~gai 160 (328)
T PRK10882 124 CPVSALTKDPKTGIVHYDKDVCTGCRYCMVACPFNVP 160 (328)
T ss_pred CCCCCEEecccCCcccCCHHHcCcccHHHHhCCccce
Confidence 4444444332 35555666666666666666665544
No 90
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=83.04 E-value=0.59 Score=43.00 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCCccccccC-CCCceeeccccccccccchhhcccchhh
Q 011877 38 KPQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 38 ~~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.++...+... ..+.+.++.++|+.|+.|+.+||+.++.
T Consensus 75 ~CP~~ai~~~~~~~~~~i~~~~C~~C~~C~~aCP~~ai~ 113 (161)
T TIGR02951 75 NCPTGAMYKREEDGLVLVDQDKCIGCRYCVWACPYGAPQ 113 (161)
T ss_pred hCCCCCEEeecCCCcEEECHHhCCCchHHHhhCCCCCcE
Confidence 3555555433 4567889999999999999999987654
No 91
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=82.52 E-value=0.88 Score=42.75 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=22.1
Q ss_pred eeeccccccccccchhhcccchhhhc
Q 011877 52 VKISLKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
..++..+|+.||.|+.+||+.+|...
T Consensus 68 ~~i~~~~C~~Cg~C~~vCP~~AI~~~ 93 (180)
T PRK12387 68 WEFNLGRCIFCGRCEEVCPTAAIKLS 93 (180)
T ss_pred ceeccccCcCccchhhhcCcCceEcc
Confidence 46888999999999999999877543
No 92
>PLN00071 photosystem I subunit VII; Provisional
Probab=82.46 E-value=0.5 Score=38.21 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=19.2
Q ss_pred eccccccccccchhhcccchhhh
Q 011877 54 ISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
++..+|+.||.|+.+||+.+|..
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~Ai~~ 65 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTDFLSV 65 (81)
T ss_pred CCCCcCcChhhHHhhcCCccceE
Confidence 35678999999999999987643
No 93
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=82.44 E-value=0.53 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.1
Q ss_pred cccccccccchhhcccchhhhc
Q 011877 56 LKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
..+|+.||+|+.+||++++...
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k 224 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSS 224 (819)
T ss_pred cccccccCcHHHhCCCCccccC
Confidence 5799999999999999987644
No 94
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=82.43 E-value=0.48 Score=38.33 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=19.7
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+...+|+.||.|+..||+.++..
T Consensus 41 ~~~~~~C~~Cg~C~~~CP~~ai~~ 64 (80)
T TIGR03048 41 APRTEDCVGCKRCESACPTDFLSV 64 (80)
T ss_pred cCCCCcCcChhHHHHhcCcccCEE
Confidence 345689999999999999987643
No 95
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=82.40 E-value=0.5 Score=49.58 Aligned_cols=24 Identities=17% Similarity=0.671 Sum_probs=20.9
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.|+.++|+.||.|+.+||+.++.
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~ 25 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIV 25 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhcc
Confidence 468889999999999999988654
No 96
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=81.98 E-value=15 Score=39.77 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCcEEEec---hhhh---hhhHHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCC
Q 011877 115 VFKKLTTFLKSLGVKSIFDT---SCSR---DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 188 (475)
Q Consensus 115 ~~~kl~~~Lk~lGf~~V~Dt---s~ga---di~~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P 188 (475)
+...++..|+++|++.++-. --|. ..--.+.++++.++.-+... ....+.|-+.||+=..-..+.| |
T Consensus 278 ~~~a~~~vL~~~G~~~~~~~~~~CCG~p~~~~G~~~~~~~~~~~ni~~~~------~~~~~~IVt~c~~C~~~l~~~y-~ 350 (486)
T PRK06259 278 VGKDAIRVLNAHGISVIIPKNQVCCGSPLIRTGQTDVAEELKKKNLEIFN------KLDVDTVVTICAGCGSTLKNDY-K 350 (486)
T ss_pred HHHHHHHHHHHCCCeEecCCCCCcccHHHHhcCCHHHHHHHHHHHHHHHH------hCCCCEEEECCchHHHHHHHhc-c
Confidence 44677889999999986521 1111 11112233333333211100 1234555557998766666677 6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCeEEEEEEecchhh
Q 011877 189 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKK 235 (475)
Q Consensus 189 ~Lip~LS~vkSPq~i~g~liK~~~~~~~~i~p~~i~~V~I~PC~aKK 235 (475)
++ + ..|.+--+ ++.+ .. ...+.+.+..+.+=-||...+
T Consensus 351 ~~-~--~~v~~i~e----~L~~-~~-~~~~~~~~~~v~~HdpC~~~r 388 (486)
T PRK06259 351 EK-E--FNVMDITE----VLVE-VG-LEKYKPLDITVTYHDPCHLRR 388 (486)
T ss_pred cc-c--cceeeHHH----HHHH-cC-CccCCCCCceEEEECchhccc
Confidence 52 1 12333322 2222 11 111233344566778998885
No 97
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=81.25 E-value=0.85 Score=47.23 Aligned_cols=31 Identities=13% Similarity=0.457 Sum_probs=22.9
Q ss_pred eeccccccccccchhhcccchhhhccHHHHHHhhc
Q 011877 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNIN 87 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~ 87 (475)
+....-|++||.|+++||..+ ++.++++.|+
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~i----di~~~i~~i~ 327 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEYI----SFSNCINKLT 327 (334)
T ss_pred ccCccccCCcCchhhhCCCCC----CHHHHHHHHH
Confidence 445788999999999999873 4445555543
No 98
>PRK10194 ferredoxin-type protein; Provisional
Probab=81.14 E-value=0.66 Score=42.83 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=21.7
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..|+.+.|++||.|+.+||+.+|.-
T Consensus 133 ~~i~~~~C~gCg~C~~~CP~~AI~~ 157 (163)
T PRK10194 133 PQLNSQLCNGCGACAASCPVSAITA 157 (163)
T ss_pred ceeCcccCcCcchhhhhCCccceEe
Confidence 5788899999999999999987653
No 99
>PRK02651 photosystem I subunit VII; Provisional
Probab=81.08 E-value=0.6 Score=37.64 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=19.2
Q ss_pred eeccccccccccchhhcccchhh
Q 011877 53 KISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.++..+|+.||.|+.+||+.+|.
T Consensus 42 ~~~~~~C~~Cg~C~~~CP~~ai~ 64 (81)
T PRK02651 42 SPRTEDCVGCKRCETACPTDFLS 64 (81)
T ss_pred cCCCCcCCChhhhhhhcCCCceE
Confidence 34668999999999999987654
No 100
>PRK06991 ferredoxin; Provisional
Probab=80.91 E-value=0.69 Score=46.52 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=19.2
Q ss_pred eccccccccccchhhcccchhhh
Q 011877 54 ISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
|+..+|+.||.|+.+||+.+|..
T Consensus 112 v~~~~CigCg~Cv~vCP~~AI~~ 134 (270)
T PRK06991 112 VLADLCTGCDLCVPPCPVDCIDM 134 (270)
T ss_pred eCHhhCCCchHHHhhCCcCCeEe
Confidence 45678999999999999986543
No 101
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=80.79 E-value=0.71 Score=50.98 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=19.9
Q ss_pred ceeeccccccccccchhhcccchhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.+.|+.++|+.||.|+.+||+.+|.
T Consensus 535 ~~~i~~~~C~~Cg~C~~~CP~~Ai~ 559 (564)
T PRK12771 535 RYHFDYDKCTGCHICADVCPCGAIE 559 (564)
T ss_pred eEEEecccCcChhHHHhhcCcCceE
Confidence 4678888888888888888887654
No 102
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=80.72 E-value=0.99 Score=42.98 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=44.0
Q ss_pred ccccccccccchhhcccchhhhccHHHHHHhhcCCCeEEEEeCcchhhhhhh-------hcCCChHhHHHHHHHHHHHcC
Q 011877 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAE-------HFGISPLQVFKKLTTFLKSLG 127 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~~k~vV~~iaP~~r~sl~~-------~fg~~~~~~~~kl~~~Lk~lG 127 (475)
++..|+.||-|..+||.+..+.-+.-++++....+..=-+..++...+-..- =+|..+.++..-|...+-+-|
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v~i~~vv~~lR~~a~k~G 116 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGVKIVEVVKALRNIAVKEG 116 (195)
T ss_pred hHhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCCCHHHHHHHHHHHHHHhc
Confidence 5777999999999999986666666677665544421023334422111111 146666655544444444567
Q ss_pred CcE
Q 011877 128 VKS 130 (475)
Q Consensus 128 f~~ 130 (475)
+..
T Consensus 117 ~~~ 119 (195)
T COG1150 117 LIE 119 (195)
T ss_pred ccc
Confidence 743
No 103
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=80.44 E-value=0.52 Score=36.50 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=17.6
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
.|..|+.|+.+||+.+|+..
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGE 20 (67)
T ss_pred CCcchhHHHHhCcHhhccCC
Confidence 49999999999999988664
No 104
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=80.08 E-value=0.84 Score=38.85 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=20.9
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..|..++|+.||.|+.+||+.+|..
T Consensus 48 ~~i~~~~C~~C~~C~~~CP~~AI~~ 72 (103)
T PRK09626 48 KVVHPESCIGCRECELHCPDFAIYV 72 (103)
T ss_pred eEeCCccCCCcCcchhhCChhhEEE
Confidence 4577889999999999999876643
No 105
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=79.88 E-value=0.44 Score=35.53 Aligned_cols=17 Identities=24% Similarity=0.804 Sum_probs=12.0
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
.++|+.||.|+.+||..
T Consensus 2 ~~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVY 18 (57)
T ss_dssp HHC--S-SHHHHCSHHH
T ss_pred HHHccCccChHHHChhh
Confidence 57899999999999954
No 106
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=79.08 E-value=0.99 Score=42.32 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
++...+.. .++.+.++.+.|++||.|+.+||+.++..
T Consensus 70 Cp~~ai~~-~~~~v~i~~~~C~~C~~C~~~CP~~ai~~ 106 (181)
T PRK10330 70 CPNGAISR-DKGFVHVMQERCIGCKTCVVACPYGAMEV 106 (181)
T ss_pred cCcccEEc-cCCeEEeChhhCCCcchhhhhCCccCeEe
Confidence 55555543 45678899999999999999999987644
No 107
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=78.69 E-value=1.1 Score=42.79 Aligned_cols=26 Identities=19% Similarity=0.546 Sum_probs=22.4
Q ss_pred CCceeeccccccccccchhhcccchh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
...+.++.+.|+.||.|+.+||+.++
T Consensus 106 ~~~~~id~~~Ci~Cg~Cv~aCp~~ai 131 (191)
T PRK05113 106 RKVAFIDEDNCIGCTKCIQACPVDAI 131 (191)
T ss_pred CceeEEeCCcCCCCChhhhhCCHhhh
Confidence 45788899999999999999997654
No 108
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=78.40 E-value=1.1 Score=53.73 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=24.2
Q ss_pred eeeccccccccccchhhcccc--hhhhccHHHHH
Q 011877 52 VKISLKDCLACSGCITSAETV--MLEKQSLDEFL 83 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~--li~~~~~~~~~ 83 (475)
+.++..+|+.||.|+.+||+. +|......+.+
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~~~Al~m~~~~~~~ 767 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAKEKALVMQPLAEQR 767 (1165)
T ss_pred EEeccccCcCccchhhhcCCCCccccccchhhHH
Confidence 678999999999999999984 55544433333
No 109
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=78.28 E-value=1 Score=41.84 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.8
Q ss_pred ceeeccccccccccchhhcccchhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
...++.++|+.||.|+.+||+.+|.
T Consensus 137 ~~~i~~~~C~~Cg~Cv~~CP~~AI~ 161 (165)
T TIGR01944 137 MHTVIADECTGCDLCVEPCPTDCIE 161 (165)
T ss_pred ceEeecccccChhHHHHhcCcCceE
Confidence 4578889999999999999998764
No 110
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=78.02 E-value=0.84 Score=39.21 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.1
Q ss_pred eeeccccccccccchhhcccchh
Q 011877 52 VKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
..++.+.|+.|+.|+.+||..++
T Consensus 46 p~~d~~~Ci~C~~C~~~CP~~ai 68 (105)
T PRK09624 46 PEFNRDKCVRCYLCYIYCPEPAI 68 (105)
T ss_pred EEEChhHCcChhhHHhhCCHhhE
Confidence 46889999999999999998754
No 111
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=77.82 E-value=1.2 Score=46.41 Aligned_cols=18 Identities=22% Similarity=0.813 Sum_probs=16.3
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
-++|+.||+|...||..+
T Consensus 350 as~CieCgqCl~~CPq~l 367 (391)
T COG1453 350 ASDCIECGQCLEKCPQHL 367 (391)
T ss_pred ccccchhhhhhhcCCCcC
Confidence 579999999999999873
No 112
>PRK09898 hypothetical protein; Provisional
Probab=77.09 E-value=1.4 Score=42.50 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCccccccC-CCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|+..++... ..+.+.++.++|+.|+.|+.+||+.++.
T Consensus 135 CP~gAi~~~~~~g~v~vd~~~CigC~~C~~aCP~~ai~ 172 (208)
T PRK09898 135 CPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMAT 172 (208)
T ss_pred CCcceEEeeccCCeEEeccccCCCcCcccccCCCCCCE
Confidence 444443322 3356778888888888888888887653
No 113
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=76.77 E-value=1.5 Score=33.20 Aligned_cols=18 Identities=17% Similarity=0.648 Sum_probs=11.5
Q ss_pred cccccccchhhcccchhh
Q 011877 58 DCLACSGCITSAETVMLE 75 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~ 75 (475)
.|+.||.|+.+||..+..
T Consensus 1 ~C~~Cg~C~~~CP~~~~~ 18 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIAT 18 (61)
T ss_dssp T----STTGGGSHHHHHC
T ss_pred CCCCCCcCcccCCCcccc
Confidence 499999999999987543
No 114
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=76.61 E-value=1.1 Score=38.31 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.4
Q ss_pred Cceeeccccccccccchhhcccchh
Q 011877 50 EPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
....++.++|++|+.|+.+||..++
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai 68 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAI 68 (105)
T ss_pred eeEEECcccCccccchhhhCCHhhe
Confidence 4567888999999999999998754
No 115
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=76.04 E-value=1.3 Score=49.16 Aligned_cols=27 Identities=15% Similarity=0.539 Sum_probs=23.1
Q ss_pred CCceeeccccccccccchhhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.+|+.|+..-|+.||.|+..||+.++.
T Consensus 600 ~~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 600 FKKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred CCceeecccccccchhhhhcCchhhee
Confidence 589999988899999999999987654
No 116
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=76.00 E-value=6.3 Score=40.88 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHcCCcEEEec---hhhhhhh-------HHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHH
Q 011877 114 QVFKKLTTFLKSLGVKSIFDT---SCSRDLT-------LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAE 183 (475)
Q Consensus 114 ~~~~kl~~~Lk~lGf~~V~Dt---s~gadi~-------~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiE 183 (475)
.+...++..|.++|++.++-- -.|.-+- ..+.++.-++.+.+.. ....-+-..||+-...+.
T Consensus 164 ~~~~~~~~ll~~~g~~v~~~~~~~ccG~~~~~~G~~~~~~~~a~~n~~~~~~~~--------~~~~~iv~~~~~c~~~~~ 235 (388)
T COG0247 164 EVGKAAVRLLEKLGVEVVLPGEEGCCGAPAYRSGFLERAKKLAKKNIEAFKKLI--------EGGDPIVTVCPACYGALK 235 (388)
T ss_pred HHHHHHHHHHHHcCCeEecCCCCCcCCChhhhcCCHHHHHHHHHHHHHHHHHHh--------hccCCEEEeCcHHHhHHH
Confidence 344677888899998876543 2222221 1222222222222100 112245567888888888
Q ss_pred HhcCCCCCCC-CCCCCCHHHHHHHHHHHH-HHHhhCCCCCCeEEEEEEecchhhH
Q 011877 184 KQLGSYILPY-ISSVKSPQQTIGATIKHH-ICQKLGFRPDEIYHVTVMPCYDKKL 236 (475)
Q Consensus 184 k~~~P~Lip~-LS~vkSPq~i~g~liK~~-~~~~~~i~p~~i~~V~I~PC~aKK~ 236 (475)
+-| |+++.. -..+.+.......++++. +.....+.+.. +.+=-||...+.
T Consensus 236 ~~y-~~~~~~~~~~v~~~~~~l~~~l~~~~l~~~~~~~~~~--v~yHdpC~~~r~ 287 (388)
T COG0247 236 KEY-PELLGERALKVVDLVELLAELLREGKLKLLPKLKGKI--VTYHDPCHLRRG 287 (388)
T ss_pred HHH-HHHHHhhHHHHHHHHHHHHHHHHHhccccccccCCCc--eEEEChhHHhhc
Confidence 888 777654 556777777777777664 21111111111 678889988753
No 117
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=75.61 E-value=2.7 Score=43.52 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=40.3
Q ss_pred eccccccccccchhhcccchhhhccHHHHHHhhcCCCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEe
Q 011877 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFD 133 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~D 133 (475)
++...|+.||.|+.+||.......+ .+..-+...+.-+ ...++ +-+.+..-+..+|++=|.|.|+-
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~~~~~~------~i~~~~~~yaa~~-----~~~s~---sGG~~t~l~~~~L~~g~Vd~V~~ 115 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVDGYIED------ELANVRKFFGARS-----NIGGQ---DGGVTSAILKSLLKQGEIDCAVG 115 (341)
T ss_pred CCcCcCcCcCchhhhCCCCcccccc------cccchhheeeecc-----ccccc---cccHHHHHHHHHHHcCCccEEEE
Confidence 5678999999999999985321111 1111111222211 11122 22334456677888888899987
Q ss_pred chhhh
Q 011877 134 TSCSR 138 (475)
Q Consensus 134 ts~ga 138 (475)
+....
T Consensus 116 ~~~~~ 120 (341)
T PRK09326 116 ITRNE 120 (341)
T ss_pred eccCC
Confidence 76543
No 118
>PRK07118 ferredoxin; Validated
Probab=75.15 E-value=1.3 Score=44.76 Aligned_cols=37 Identities=11% Similarity=0.297 Sum_probs=27.6
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
++...+... .+.+.|+.++|++||.|+.+||+.++..
T Consensus 151 Cp~~AI~~~-~g~~~id~~~C~~Cg~Cv~aCP~~ai~~ 187 (280)
T PRK07118 151 CPFDAIHIE-NGLPVVDEDKCTGCGACVKACPRNVIEL 187 (280)
T ss_pred CCccCeEcc-CCeEEEChhhCcChhHHHHhcCccceee
Confidence 555555533 3778899999999999999999866543
No 119
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=74.76 E-value=1.4 Score=45.01 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=21.8
Q ss_pred Cceeeccccccccccchhhcccchh
Q 011877 50 EPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
.+..++.++|+.|+.|+.+||...+
T Consensus 240 ~~p~id~~~Ci~C~~C~~~CP~~ai 264 (312)
T PRK14028 240 DKPVIDHSKCIMCRKCWLYCPDDAI 264 (312)
T ss_pred cceEECcccCcCcccccccCChhhh
Confidence 4678899999999999999998754
No 120
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=74.27 E-value=1.5 Score=37.19 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.0
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...+..+.|+.|+.|+.+||..++..
T Consensus 28 ~~~~~~~~C~~C~~C~~~CP~~~i~~ 53 (101)
T TIGR00402 28 RESLFSAVCTRCGECASACENNILQL 53 (101)
T ss_pred ccccCcCcCcChhHHHHHcCccccee
Confidence 45567789999999999999876543
No 121
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=73.68 E-value=1.4 Score=43.18 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=22.3
Q ss_pred CCceeeccccccccccchhhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..+..++.++|+.|+.|+.+||..++.
T Consensus 140 ~~p~~id~~~C~~C~~C~~~CP~~ai~ 166 (234)
T TIGR02700 140 ITPYMIDRKRCKGCGICVDACPRSAID 166 (234)
T ss_pred cCceEEChhHCcCcchHHHhCCcccEE
Confidence 345678889999999999999987654
No 122
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=73.61 E-value=8.4 Score=44.00 Aligned_cols=17 Identities=18% Similarity=0.692 Sum_probs=11.0
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
...|..||.|..+||+.
T Consensus 402 ~~~Ct~CG~C~evCP~g 418 (731)
T cd01916 402 FDQCVGCGRCEQECPKE 418 (731)
T ss_pred HhhhhhhhHHhhhCCCC
Confidence 45666666666666664
No 123
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=73.61 E-value=1.6 Score=39.15 Aligned_cols=24 Identities=13% Similarity=0.429 Sum_probs=21.0
Q ss_pred eeeccccccccc-----cchhhcccchhh
Q 011877 52 VKISLKDCLACS-----GCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg-----~Cit~c~~~li~ 75 (475)
..|+.+.|++|| .|+.+||..++.
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~ 31 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMH 31 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceE
Confidence 468899999999 999999987764
No 124
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=73.52 E-value=1.3 Score=45.95 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.0
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..|+.+.|++||.|+.+||+.+|..
T Consensus 7 ~vi~~~~C~gCg~C~~~CP~~aI~~ 31 (341)
T PRK09326 7 EVIEYDVCTACGACEAVCPIGAITV 31 (341)
T ss_pred cEECcccCcChHHHHHhCCHhhhec
Confidence 3678889999999999999876543
No 125
>PRK10194 ferredoxin-type protein; Provisional
Probab=73.43 E-value=2 Score=39.69 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=17.8
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.++.+.|+.|+.|+.+||+.++.
T Consensus 61 ~~~~~~~C~~C~~C~~~CP~~ai~ 84 (163)
T PRK10194 61 VNFKNNECSFCYACAQACPESLFS 84 (163)
T ss_pred eeecCCCCCCchhhHhhCcchhee
Confidence 456667788888888888887653
No 126
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=73.16 E-value=1.6 Score=37.08 Aligned_cols=37 Identities=11% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCccccccCCCCceeeccccccccccchhhccc-chh
Q 011877 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAET-VML 74 (475)
Q Consensus 38 ~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~-~li 74 (475)
.|+....+....+++.++.+.|+-||-|--.||. +++
T Consensus 46 aCPA~~Y~~~~~g~l~~~yegClECGTCRvlc~~~~~i 83 (99)
T COG2440 46 ACPAGCYKLIDDGKLRFDYEGCLECGTCRVLCPHSGLI 83 (99)
T ss_pred cCCHHHeeECCCCcEEEeecCeeeccceeEecCCCcce
Confidence 3666666666779999999999999999999997 543
No 127
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=73.04 E-value=1.1 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.574 Sum_probs=17.5
Q ss_pred eeccccccccccchhhcccchhh
Q 011877 53 KISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.|+.++|+.||.|+.+||+.+++
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~AI~ 348 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGGAFE 348 (391)
T ss_pred eeChHhCcChHHHHhhCCccceE
Confidence 57777888888888888876553
No 128
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=72.73 E-value=1.3 Score=42.89 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=18.3
Q ss_pred cccccccccchhhcccchhhh
Q 011877 56 LKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~li~~ 76 (475)
++.|+.||.|+.+||+.+++.
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai~~ 72 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDILSL 72 (213)
T ss_pred cccccchhHHHHhCCcccccc
Confidence 489999999999999987654
No 129
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=72.64 E-value=1.8 Score=41.92 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=19.8
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
...|+.++|+.||.|+.+||+.
T Consensus 169 ~p~Vd~~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 169 IPTVDSAKCTGCGTCEKHCVLS 190 (213)
T ss_pred ceEEecccCCCcchhhHhCCCC
Confidence 4678999999999999999975
No 130
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=72.60 E-value=1.7 Score=46.34 Aligned_cols=26 Identities=12% Similarity=0.388 Sum_probs=21.4
Q ss_pred ceeeccccccccccchhhccc-chhhh
Q 011877 51 PVKISLKDCLACSGCITSAET-VMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~-~li~~ 76 (475)
...|+.++|+.||.|+.+||+ .+|..
T Consensus 371 ~~~i~~~~C~~Cg~C~~~CP~~~Ai~~ 397 (420)
T PRK08318 371 TPEVIEEECVGCNLCAHVCPVEGCITM 397 (420)
T ss_pred eEEechhhCcccchHHhhCCCCCCEEE
Confidence 467888999999999999998 76643
No 131
>PRK07118 ferredoxin; Validated
Probab=72.29 E-value=1.6 Score=44.09 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++..++.. .++.+.|+.++|+.||.|+.+||+.+|.
T Consensus 225 CP~~AI~~-~~~~~vId~~~C~~Cg~C~~~CP~~AI~ 260 (280)
T PRK07118 225 CPAGAITM-ENNLAVIDQEKCTSCGKCVEKCPTKAIR 260 (280)
T ss_pred CCcCcEEE-eCCcEEEcCCcCCCHHHHHHhCCccccE
Confidence 44444443 3456667777777777777777766543
No 132
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=72.02 E-value=2 Score=50.62 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=26.6
Q ss_pred CCCCCCccc---cccC----CCCceeeccccccccccchhhcccch
Q 011877 35 NPDKPQVST---SSKQ----QAEPVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 35 ~~~~~~~~~---~~~~----~~~~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
+.+.|++.+ ++.. ..+.+.| .+.|+.||.|+..||...
T Consensus 898 C~~vCP~~A~~~i~~~g~~~~~~~~~~-~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 898 CVDVCPNRANVSIAVPGFQNRFQIVHL-DAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred hhhhCCcccccccccCCcccCCceEEc-CccCccccchhhhCCCCC
Confidence 345678777 3321 2355666 589999999999999853
No 133
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=71.31 E-value=1.7 Score=43.24 Aligned_cols=20 Identities=15% Similarity=0.665 Sum_probs=17.8
Q ss_pred eeccccccccccchhhcccc
Q 011877 53 KISLKDCLACSGCITSAETV 72 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~ 72 (475)
....+.||.||.|+.+||..
T Consensus 153 ~~~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNG 172 (250)
T ss_pred hhCccccCCCcccccccCCc
Confidence 45688999999999999986
No 134
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=71.06 E-value=1.7 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=19.7
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.++..+|..||.|+.+||+.+|.
T Consensus 284 ~~~d~~~C~gCg~C~~~CP~~AI~ 307 (312)
T PRK14028 284 IDFDYQYCKGCGVCAEVCPTGAIQ 307 (312)
T ss_pred ecCCcccCcCcCchhhhCCHhheE
Confidence 345667899999999999997664
No 135
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=70.91 E-value=1.6 Score=33.10 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=11.5
Q ss_pred eccccccccccchhhcccch
Q 011877 54 ISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~l 73 (475)
...+.|+.||.|...||.++
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTTTT--S--HHHHH-TT--
T ss_pred cccccCcCcCcCcccccCCC
Confidence 56789999999999999864
No 136
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=70.61 E-value=2 Score=45.68 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=18.4
Q ss_pred Cceeeccccccccccchhhcccchhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.++.|+.+.|+.|+.|+.+||+.++.
T Consensus 3 ~~~~id~~~Ci~C~~C~~~CP~~ai~ 28 (411)
T TIGR03224 3 KQHLIDPEICIRCNTCEETCPIDAIT 28 (411)
T ss_pred ceeeeCcccCcCccchhhhCCcccEe
Confidence 35567777788888888888876543
No 137
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=70.31 E-value=1.5 Score=32.67 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=8.4
Q ss_pred ccccccccchhhcccc
Q 011877 57 KDCLACSGCITSAETV 72 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~ 72 (475)
..|+.||.|..+||.+
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 7899999999999975
No 138
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=70.26 E-value=2.8 Score=37.80 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=14.6
Q ss_pred ccccccccchhhcccc
Q 011877 57 KDCLACSGCITSAETV 72 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~ 72 (475)
+.|+.||.|..+||+.
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 5799999999999975
No 139
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=70.18 E-value=1.8 Score=40.84 Aligned_cols=44 Identities=16% Similarity=0.464 Sum_probs=34.9
Q ss_pred cCCCCceeeccccccccccchhhcccchhh--hccHHHHHHhhcCC
Q 011877 46 KQQAEPVKISLKDCLACSGCITSAETVMLE--KQSLDEFLSNINKG 89 (475)
Q Consensus 46 ~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~--~~~~~~~~~~l~~~ 89 (475)
++...-+.|+.+.|++|..||..||..+|. .+.+-.+++.|-.+
T Consensus 104 ~~~~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCTG 149 (198)
T COG2878 104 EQARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCTG 149 (198)
T ss_pred cccceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHHHhcC
Confidence 456677999999999999999999997653 44466777777665
No 140
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=69.89 E-value=2.5 Score=43.98 Aligned_cols=19 Identities=16% Similarity=0.553 Sum_probs=16.4
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
....|+.||.|+.+||..+
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 4567999999999999863
No 141
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=69.87 E-value=2.2 Score=41.86 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
|+...+.. ..++..++..+|..||.|+..||+.++..
T Consensus 160 CP~~ai~~-~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~ 196 (234)
T TIGR02700 160 CPRSAIDM-VDGKAFIRLLKCVGCGKCKEACPYNAIHG 196 (234)
T ss_pred CCcccEEe-cCCceEEchhhCCccchHHhhCCCCceec
Confidence 44434332 23556889999999999999999876643
No 142
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=69.85 E-value=2.1 Score=42.60 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=12.6
Q ss_pred ccccccccchhhcccchhh
Q 011877 57 KDCLACSGCITSAETVMLE 75 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~li~ 75 (475)
++|.+|+.|+.+||...+.
T Consensus 169 ~~C~~C~~C~~~CP~~vi~ 187 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLE 187 (259)
T ss_pred hhCCChHHHHHhCCccceE
Confidence 5677777777777765543
No 143
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=69.82 E-value=2 Score=51.64 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=22.4
Q ss_pred Cceeeccccccccccchhhcccchhhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
....++.++|+.||.|+.+||+.+|..
T Consensus 676 ~~p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 676 NVPVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred ccceeccccCCCccchHHhcChhhccc
Confidence 345678899999999999999987653
No 144
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=69.60 E-value=1.7 Score=43.69 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.0
Q ss_pred Cceeeccccccccccchhhcccchh
Q 011877 50 EPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
..+.|+.++|+.||-|..+|++.+|
T Consensus 62 ~~p~i~~e~C~~CG~C~~vC~f~Ai 86 (284)
T COG1149 62 EIPEIDPEKCIRCGKCAEVCRFGAI 86 (284)
T ss_pred hccccChhhccccCcHHHhCCCCeE
Confidence 5788888889999999999988765
No 145
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=68.54 E-value=2.3 Score=45.30 Aligned_cols=38 Identities=11% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCCCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..|+...+... ...+.++..+|..|+.|+.+||+.+|.
T Consensus 20 ~~CP~~ai~~~-~~~~~i~~~~C~~C~~C~~~CP~~AI~ 57 (411)
T TIGR03224 20 ETCPIDAITHD-DRNYVVKADVCNGCMACVSPCPTGAID 57 (411)
T ss_pred hhCCcccEecc-CCceEeCcccCcCHHHHHhhcCcccce
Confidence 34555555432 345678899999999999999998765
No 146
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=68.24 E-value=2 Score=44.71 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=14.6
Q ss_pred cccccccccchhhccc
Q 011877 56 LKDCLACSGCITSAET 71 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~ 71 (475)
.++||.||+|..+||+
T Consensus 225 ~~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 225 DSRCIACGRCNFVCPT 240 (344)
T ss_pred HhhCccCccccccCCc
Confidence 3489999999999998
No 147
>PRK08764 ferredoxin; Provisional
Probab=67.92 E-value=2.5 Score=37.95 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=18.6
Q ss_pred eccccccccccchhhcccchhh
Q 011877 54 ISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++.++|+.||.|+.+||+.+|.
T Consensus 112 v~~~~C~~Cg~Cv~~CP~~Ai~ 133 (135)
T PRK08764 112 VIAPLCTGCELCVPACPVDCIE 133 (135)
T ss_pred ecCCcCcCccchhhhcCccceE
Confidence 4567899999999999998764
No 148
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=67.61 E-value=3.4 Score=44.80 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=15.2
Q ss_pred Cceeeccccccccccchhhcccchhhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
-.+.++.+.|..||-|+. ||+++|+-
T Consensus 554 ~~a~vde~~C~gC~~C~~-Cpf~ais~ 579 (622)
T COG1148 554 FVATVDEDKCTGCGICAE-CPFGAISV 579 (622)
T ss_pred cccccchhhhcCCcceee-CCCCceec
Confidence 345555566666666666 66665543
No 149
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=67.38 E-value=3.2 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=17.2
Q ss_pred eeccccccccccchhhcccchh
Q 011877 53 KISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li 74 (475)
+...+.|+.||.|+.+||..++
T Consensus 359 ~~~~~~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 359 ESPEKPCIRCGKCVQVCPMNLL 380 (435)
T ss_pred cccCCcCcCccchhhhCccchh
Confidence 3677889999999999987643
No 150
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=67.37 E-value=2 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.664 Sum_probs=18.7
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
...++.++||.||.||++|..+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EV 227 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEH 227 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHh
Confidence 3557789999999999999764
No 151
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=67.14 E-value=2.6 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.541 Sum_probs=20.3
Q ss_pred Cceeeccccccccccchhhcccc
Q 011877 50 EPVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
+.+..+.++||.||.||++|+.+
T Consensus 134 ~~I~~D~~rCI~C~RCVr~C~ev 156 (819)
T PRK08493 134 GKINYDPSLCIVCERCVTVCKDK 156 (819)
T ss_pred CcEEechhhcccccHHHhhCccc
Confidence 56788999999999999999863
No 152
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=67.05 E-value=2.2 Score=42.56 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=19.2
Q ss_pred eeeccccccccccchhhcccc
Q 011877 52 VKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
..|+.+.|+.||.|+.+||+.
T Consensus 179 p~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 179 PTVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred eEEeHHHCcCcChhhHhcCCC
Confidence 568889999999999999986
No 153
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=66.35 E-value=2.5 Score=42.49 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=35.3
Q ss_pred CCCCCCCccccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 34 KNPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
++.+.|.-+++...++++-.++.+.|=+||.|.-+||..+|+.
T Consensus 76 ~C~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~ 118 (284)
T COG1149 76 KCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEE 118 (284)
T ss_pred cHHHhCCCCeEEEcCCCceecCcccccCcccceeeCCCccccc
Confidence 3445577777766678899999999999999999999988764
No 154
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.97 E-value=2.7 Score=47.26 Aligned_cols=39 Identities=18% Similarity=0.414 Sum_probs=30.1
Q ss_pred CCCCccccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..|+...+.. ..+.+.++.+.|+.|+.|+.+||+.++..
T Consensus 66 ~~CP~~ai~~-~~~~v~~d~~~C~gC~~C~~~CP~~ai~~ 104 (639)
T PRK12809 66 TACPVNALTF-QSDSVQLDEQKCIGCKRCAIACPFGVVEM 104 (639)
T ss_pred hhCCcCceec-cccceecChhhCcchhhHhhhcCCCCEEc
Confidence 3466666654 34678889999999999999999987654
No 155
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=65.83 E-value=2.5 Score=42.41 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.4
Q ss_pred cee-eccccccccccchhhcccch
Q 011877 51 PVK-ISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~-I~~~dCi~Cg~Cit~c~~~l 73 (475)
+.. ++.++|++|+.|+.+||...
T Consensus 201 ~i~~~d~~~C~~C~~C~~~CP~~~ 224 (271)
T PRK09477 201 RVKAHDRQKCTRCMDCFHVCPEPQ 224 (271)
T ss_pred ccccCCcccCcccCCcCCcCCCcc
Confidence 444 77899999999999999864
No 156
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=65.67 E-value=2.9 Score=41.70 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=18.8
Q ss_pred CCCceeeccccccccccchhhcccchhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
....+.+ .+.|..|+.|+.+||...+.
T Consensus 161 ~~p~I~i-~~~C~~C~~C~~~CP~~vi~ 187 (263)
T PRK00783 161 YYPRIEV-SEDCDECEKCVEACPRGVLE 187 (263)
T ss_pred ccccccc-cccCCchHHHHHhCCccccE
Confidence 3445555 67888888888888876543
No 157
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=65.37 E-value=3.9 Score=39.62 Aligned_cols=19 Identities=16% Similarity=0.470 Sum_probs=16.5
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
....|+.||.|..+||.++
T Consensus 192 ~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 192 GVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CCccCccccccccccCCCC
Confidence 4578999999999999863
No 158
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=65.35 E-value=2.6 Score=46.98 Aligned_cols=27 Identities=30% Similarity=0.724 Sum_probs=18.9
Q ss_pred CCceeeccccccccccchh--hcccchhh
Q 011877 49 AEPVKISLKDCLACSGCIT--SAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit--~c~~~li~ 75 (475)
..++.++.++|++||.|+. .||.....
T Consensus 542 ~~~~~id~~~C~~C~~C~~~~~CP~~~~~ 570 (595)
T TIGR03336 542 AGPYKVDQDKCIGCKKCIKELGCPAIEPE 570 (595)
T ss_pred cceEEEcCCcCCCccccccccCCCCcccc
Confidence 3467777778888888888 78754333
No 159
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=65.28 E-value=2.2 Score=42.47 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=18.1
Q ss_pred cccccccccchhhcccchhhh
Q 011877 56 LKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+.|+.||.|+.+||+.+|..
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~aI~~ 78 (254)
T PRK09476 58 LSACIRCGLCVQACPYDTLKL 78 (254)
T ss_pred hhhCcCchHHHHhCCccccCc
Confidence 489999999999999876653
No 160
>PRK13795 hypothetical protein; Provisional
Probab=65.25 E-value=2.9 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=17.1
Q ss_pred CCceeeccccccccccchhhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..++.+..+.|+.||.|+.+||+.++.
T Consensus 573 ~~~~v~~~~~C~~Cg~C~~~CP~~ai~ 599 (636)
T PRK13795 573 AARLLRRAAECVGCGVCVGACPTGAIR 599 (636)
T ss_pred cCeEEEccccCCCHhHHHHhCCcccEE
Confidence 345556666777777777777765443
No 161
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=64.66 E-value=2.6 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.681 Sum_probs=18.1
Q ss_pred eccccccccccchhhcccchh
Q 011877 54 ISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li 74 (475)
.+++.|+.||.|..+||+..+
T Consensus 4 ~~~~~Ci~Cg~C~~~CP~~~~ 24 (396)
T PRK11168 4 TSFDSCIKCTVCTTACPVARV 24 (396)
T ss_pred cchhhcCCCCCCCccCCCccc
Confidence 467889999999999998754
No 162
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=64.48 E-value=2.8 Score=48.46 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=16.4
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
+|..||+||.+||++++...
T Consensus 191 ~~~~cG~cv~vCP~GAl~~k 210 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTGA 210 (797)
T ss_pred CccccCCchhhCCccccccc
Confidence 57789999999999977543
No 163
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=64.35 E-value=2.8 Score=46.77 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=16.4
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
+|..||+||.+||++++..+
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k 202 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSK 202 (603)
T ss_pred CCcccCChHhhCCccccccc
Confidence 57789999999999877544
No 164
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=64.12 E-value=6.3 Score=44.90 Aligned_cols=21 Identities=19% Similarity=0.670 Sum_probs=16.7
Q ss_pred ccccccccccchhhcccchhh
Q 011877 55 SLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~ 75 (475)
....||.||.|+.+||..++.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP 388 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLP 388 (695)
T ss_pred chhhcCCcccHHHHCCccchh
Confidence 457799999999999987653
No 165
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=63.90 E-value=2.7 Score=43.57 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=15.2
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
.++||+||.|..+||+=
T Consensus 219 ~~rCi~C~~C~~~CPtC 235 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTC 235 (334)
T ss_pred HhhCCcCccccccCCce
Confidence 46999999999999983
No 166
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=63.89 E-value=2.9 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=20.4
Q ss_pred CCceeeccccccccccchhhcccc
Q 011877 49 AEPVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
......+.++||.||.||++|..+
T Consensus 608 ~~~i~~D~~kCI~CgrCv~~C~ev 631 (652)
T PRK12814 608 NGDIRFEREKCVDCGICVRTLEEY 631 (652)
T ss_pred CCCeEeccccccCchHHHHHHHHh
Confidence 345778899999999999999865
No 167
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=63.72 E-value=3.3 Score=44.63 Aligned_cols=22 Identities=0% Similarity=-0.194 Sum_probs=17.9
Q ss_pred ccccccccccchhhcccchhhh
Q 011877 55 SLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...-||.||.|+.+||..+...
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~ 392 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPT 392 (447)
T ss_pred CccceeECChHhhcCCCCCCHH
Confidence 4566999999999999876544
No 168
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=63.72 E-value=2.6 Score=41.45 Aligned_cols=19 Identities=21% Similarity=0.810 Sum_probs=16.7
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
.+..||.||-|.++||...
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~ 158 (234)
T COG0479 140 ELSECILCGCCTAACPSIW 158 (234)
T ss_pred hhhhccccchhhhhCCccc
Confidence 5778999999999999763
No 169
>COG1146 Ferredoxin [Energy production and conversion]
Probab=63.54 E-value=3.2 Score=32.38 Aligned_cols=23 Identities=17% Similarity=0.631 Sum_probs=19.9
Q ss_pred eeeccccccccccchhhcccchh
Q 011877 52 VKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
..|+.+.|.+||.|+.+||...+
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~ 25 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVF 25 (68)
T ss_pred eEECchhcCCCChheeccChhhE
Confidence 56888999999999999998643
No 170
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=63.21 E-value=2.3 Score=45.52 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.7
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
+.|+...||.||-||..||+.+|.-
T Consensus 45 ~~ise~lCigcgicvkkcpf~ai~i 69 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPFEAIQI 69 (592)
T ss_pred chhhHhhhccccceeeccCcceEEe
Confidence 9999999999999999999987653
No 171
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=62.81 E-value=2.9 Score=40.57 Aligned_cols=18 Identities=28% Similarity=0.789 Sum_probs=16.2
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
..+.||.||.|+.+||..
T Consensus 136 ~~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhhccccccccccCCCC
Confidence 458899999999999986
No 172
>PRK09898 hypothetical protein; Provisional
Probab=62.62 E-value=2.6 Score=40.48 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=20.4
Q ss_pred ccccccccccchhhcccchhhhccHH
Q 011877 55 SLKDCLACSGCITSAETVMLEKQSLD 80 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~~~~~ 80 (475)
...+|..||.|+.+||+.+|.-...+
T Consensus 179 ~~~kC~~Cg~Cv~~CP~~Ai~~~~~~ 204 (208)
T PRK09898 179 KSSKCVLCGECANACPTGALKIIEWK 204 (208)
T ss_pred cCCcCcChHHHHHhCCcccEEEecHH
Confidence 45799999999999999876544433
No 173
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.49 E-value=4 Score=45.99 Aligned_cols=24 Identities=13% Similarity=0.674 Sum_probs=12.8
Q ss_pred Cceeeccccccccccchhhcccch
Q 011877 50 EPVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
+.+.|+.+.|++|+.|+.+||+.+
T Consensus 78 ~~~~id~~~C~~C~~C~~~CP~~a 101 (654)
T PRK12769 78 DSIQVNQQKCIGCKSCVVACPFGT 101 (654)
T ss_pred CeEEEecccccCcChhcccCCccC
Confidence 344555555555555555555543
No 174
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=62.34 E-value=2.6 Score=41.27 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=22.8
Q ss_pred Cceeeccccccccccchhhcccchhhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
-.+.|+.+.|+.|+.|+.+||+.++..
T Consensus 167 ~~~~id~~~C~~C~~C~~aCP~~ai~~ 193 (228)
T TIGR03294 167 MTKVVNQGLCMGCGTCAAACPTRAIEM 193 (228)
T ss_pred eeEEEChhhCcChhHHHHhCCHhhEEE
Confidence 457899999999999999999876543
No 175
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=61.84 E-value=3.1 Score=41.30 Aligned_cols=19 Identities=26% Similarity=0.817 Sum_probs=16.6
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
...+||.||.|+.+||...
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 4678999999999999763
No 176
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=61.14 E-value=6 Score=45.36 Aligned_cols=18 Identities=17% Similarity=0.562 Sum_probs=10.9
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
....|+.||.|..+||+.
T Consensus 440 l~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 440 LYDKCIGCGRCEQVCPKN 457 (781)
T ss_pred hhhhccchhHHhhhCCCC
Confidence 345666666666666654
No 177
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=61.10 E-value=3.6 Score=40.34 Aligned_cols=23 Identities=17% Similarity=0.588 Sum_probs=19.7
Q ss_pred CCceeeccccccccccchhhccc
Q 011877 49 AEPVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
...+.++.++|+.||.|+.+|+.
T Consensus 138 ~~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 138 HPRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred CCcEEeehhhCcCccHHHHHHHH
Confidence 35667788999999999999985
No 178
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=60.62 E-value=3.9 Score=41.67 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCceeeccccccccccchhhcccchhhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...+-.+++.+|..||-|+.-||..+++.
T Consensus 184 ~~~~p~v~e~kc~~c~~cv~~cp~~Ai~~ 212 (354)
T COG2768 184 LDEKPVVVEEKCYDCGLCVKICPVGAITL 212 (354)
T ss_pred cccCceeeeecccccchhhhhCCCcceec
Confidence 34566789999999999999999998765
No 179
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=60.19 E-value=3.5 Score=43.87 Aligned_cols=24 Identities=21% Similarity=0.584 Sum_probs=20.7
Q ss_pred CCceeeccccccccccchhhcccc
Q 011877 49 AEPVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
..++.++.++|+.||.|+.+||..
T Consensus 334 ~~~~~~~~~~C~~C~~C~~~Cp~~ 357 (420)
T PRK08318 334 IVYARIDQDKCIGCGRCYIACEDT 357 (420)
T ss_pred ceEEEECHHHCCCCCcccccCCCc
Confidence 456788899999999999999963
No 180
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=60.17 E-value=3.2 Score=47.76 Aligned_cols=21 Identities=14% Similarity=0.665 Sum_probs=17.0
Q ss_pred Cceeeccccccccccchhhcc
Q 011877 50 EPVKISLKDCLACSGCITSAE 70 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~ 70 (475)
..+..+.++||.||.||+.|.
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQ 157 (776)
T ss_pred cceeecccccccCcHHHHHHH
Confidence 346778999999999998765
No 181
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=59.89 E-value=4 Score=40.55 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=18.3
Q ss_pred ceeec-cccccccccchhhcccch
Q 011877 51 PVKIS-LKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~I~-~~dCi~Cg~Cit~c~~~l 73 (475)
+...+ .++|++|+.|+.+||...
T Consensus 194 ~i~~~~~~~C~~C~~C~~vCP~~~ 217 (255)
T TIGR02163 194 KIAASDREKCTNCMDCFNVCPEPQ 217 (255)
T ss_pred EEEeeccccCeEcCCccCcCCCCc
Confidence 33444 789999999999999863
No 182
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=59.85 E-value=4.7 Score=47.79 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=19.5
Q ss_pred Cceeecccc-ccccccchhhcccchhhh
Q 011877 50 EPVKISLKD-CLACSGCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~d-Ci~Cg~Cit~c~~~li~~ 76 (475)
.+..|..+. |+.||.|+.+||+.++..
T Consensus 913 ~~~~i~~d~~C~~CG~C~~vCP~~a~~~ 940 (1012)
T TIGR03315 913 QFQIVHLDGMCNECGNCATFCPYDGAPY 940 (1012)
T ss_pred CceeeecCccccccchHHHhCCCCcccc
Confidence 343455555 999999999999976543
No 183
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=59.76 E-value=5 Score=43.15 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=15.7
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
.++|++|+.|+.+||++
T Consensus 230 ~~~Ci~C~~Cv~vCP~g 246 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG 246 (434)
T ss_pred CCCCCChhhhHHhCCCC
Confidence 67899999999999987
No 184
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=59.22 E-value=3.8 Score=46.64 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=15.4
Q ss_pred ccccccccchhhcccch
Q 011877 57 KDCLACSGCITSAETVM 73 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~l 73 (475)
.+|+.||.|.-+||..+
T Consensus 409 ~~CieCG~C~~vCPs~I 425 (695)
T PRK05035 409 FDCIECGACAYVCPSNI 425 (695)
T ss_pred hhccccCcccccCCCCC
Confidence 47999999999999985
No 185
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=58.64 E-value=3.9 Score=46.48 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=16.0
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
+|..||+||.+||++++...
T Consensus 186 ~~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 186 TSELSGNVIDLCPVGALTSK 205 (687)
T ss_pred cccccccHHhhCCCcccccc
Confidence 36789999999999877543
No 186
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=57.93 E-value=4.6 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.674 Sum_probs=19.5
Q ss_pred CCceeeccccccccccchhhccc
Q 011877 49 AEPVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
...+..+.++||.||.||+.|..
T Consensus 134 ~p~i~~d~~rCI~C~rCvr~c~e 156 (603)
T TIGR01973 134 GPLIKTEMTRCIHCTRCVRFANE 156 (603)
T ss_pred CCCeEecCCcCccccHHHHHHHH
Confidence 34577899999999999999964
No 187
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=57.86 E-value=4.1 Score=41.13 Aligned_cols=18 Identities=22% Similarity=0.767 Sum_probs=16.2
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
..+.||.||.|+.+||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 568999999999999986
No 188
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=57.79 E-value=6.9 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.8
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|..||.|..+||.++
T Consensus 45 ~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 45 LWMCTTCYTCQERCPRDV 62 (144)
T ss_pred CCcCcCcCchhhhcCCCC
Confidence 457999999999999874
No 189
>PRK13984 putative oxidoreductase; Provisional
Probab=57.73 E-value=5.8 Score=44.14 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=15.1
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
..+|+.||.|..+||..
T Consensus 184 ~~~C~~Cg~C~~~CP~~ 200 (604)
T PRK13984 184 AARCVECGICTDTCPAH 200 (604)
T ss_pred hhhhcCCCcccccCCCC
Confidence 35799999999999985
No 190
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=57.44 E-value=2.2 Score=40.30 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=34.2
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhhhc
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
|++.++-..++.-.++..+.|-+|+-||..||+..|+.+
T Consensus 127 CpvdAivg~~~~mhtv~~dlCTGC~lCva~CPtdci~m~ 165 (198)
T COG2878 127 CPVDAIVGATKAMHTVIADLCTGCDLCVAPCPTDCIEMQ 165 (198)
T ss_pred CChhhhhccchhHHHHHHHHhcCCCcccCCCCCCceeee
Confidence 788888888888899999999999999999999876544
No 191
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=57.12 E-value=4.1 Score=40.20 Aligned_cols=18 Identities=28% Similarity=0.840 Sum_probs=16.2
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
...+||.||-|..+||+.
T Consensus 147 ~~~~CI~Cg~C~saCP~~ 164 (239)
T PRK13552 147 ELDRCIECGCCVAACGTK 164 (239)
T ss_pred chhhccccchhHhhCCCC
Confidence 567899999999999976
No 192
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=56.91 E-value=3.6 Score=44.71 Aligned_cols=19 Identities=26% Similarity=0.717 Sum_probs=16.7
Q ss_pred cccccccchhhcccchhhh
Q 011877 58 DCLACSGCITSAETVMLEK 76 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~ 76 (475)
-|+.||.|+.+||..|+.+
T Consensus 366 sCi~C~~C~d~CP~~Llp~ 384 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQ 384 (529)
T ss_pred ccccHHHHHHhCccccCHH
Confidence 8999999999999887644
No 193
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=56.33 E-value=6.1 Score=38.92 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=16.1
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|+.||.|..+||.++
T Consensus 200 l~~C~~C~~C~~vCPkgI 217 (235)
T PRK12575 200 LFRCRTIMNCVDVCPKGL 217 (235)
T ss_pred cccccCcchhccccCCCC
Confidence 569999999999999875
No 194
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=56.14 E-value=4.4 Score=40.33 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=16.1
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
...+||.||-|..+||..
T Consensus 140 ~~~~CI~CG~C~s~CPv~ 157 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVV 157 (251)
T ss_pred chhhcccCCcccCcCCcc
Confidence 567899999999999976
No 195
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=56.02 E-value=4.3 Score=43.57 Aligned_cols=18 Identities=17% Similarity=0.647 Sum_probs=15.9
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
...+||.||.|..+||+-
T Consensus 291 e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 291 EVLACIRCGACQNECPVY 308 (432)
T ss_pred hHhhCCCCCCccccCcch
Confidence 467899999999999975
No 196
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=55.65 E-value=6 Score=42.70 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=18.4
Q ss_pred eccccccccccchhhcccchhhh
Q 011877 54 ISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
....-||.||.|+.+||..+...
T Consensus 371 ~~~~~CI~Cg~C~~vCP~~L~P~ 393 (448)
T PRK05352 371 GSERAMVPIGNYERVMPLDILPT 393 (448)
T ss_pred CCCcceeecCcHhhcCCCCCCHH
Confidence 45678999999999999875433
No 197
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=55.60 E-value=3.4 Score=42.31 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.9
Q ss_pred eeeccccccccccchhhcccchhhhc
Q 011877 52 VKISLKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
-.++.+.|..||.|+.+||+++|.-.
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~ 192 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWD 192 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeec
Confidence 57889999999999999999987653
No 198
>PRK13984 putative oxidoreductase; Provisional
Probab=54.98 E-value=4.7 Score=44.88 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.4
Q ss_pred Cceeeccccccccccchhhcccchhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.+.++.+.|+.||.|+.+||+.++.
T Consensus 38 ~~~~~d~~~Ci~C~~C~~~Cp~~ai~ 63 (604)
T PRK13984 38 GFHINDWEKCIGCGTCSKICPTDAIT 63 (604)
T ss_pred CccccChhhCcCccchhhhCCccceE
Confidence 34567889999999999999987543
No 199
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=54.49 E-value=5.1 Score=41.00 Aligned_cols=22 Identities=14% Similarity=0.591 Sum_probs=19.1
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
+..++.+.|+.||.|+.+||..
T Consensus 163 ~~~~d~~~C~~Cg~C~~~Cp~~ 184 (314)
T TIGR02912 163 EPQYDADRCIGCGACVKVCKKK 184 (314)
T ss_pred CCceeCccCCcchHHHHhcChh
Confidence 4568899999999999999964
No 200
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=53.18 E-value=5.1 Score=46.64 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=16.3
Q ss_pred Cceeeccccccccccchhhcc
Q 011877 50 EPVKISLKDCLACSGCITSAE 70 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~ 70 (475)
.-...+.++||.||.||+.|.
T Consensus 142 ~~i~~d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 142 PFISHEMNRCIACYRCVRYYK 162 (847)
T ss_pred CceEecCCcCccccHHHHHHH
Confidence 346788889999888887664
No 201
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=53.10 E-value=5.2 Score=45.52 Aligned_cols=20 Identities=30% Similarity=0.782 Sum_probs=17.7
Q ss_pred eeeccccccccccchhhccc
Q 011877 52 VKISLKDCLACSGCITSAET 71 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~ 71 (475)
+..+.++||.|+.||+.|..
T Consensus 140 i~~~~~rCI~C~rCvr~c~e 159 (687)
T PRK09130 140 VKTVMTRCIHCTRCVRFATE 159 (687)
T ss_pred EEEecccCCcccHHHHHHHh
Confidence 67788999999999999964
No 202
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=53.07 E-value=5.6 Score=45.77 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=16.6
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
+|..||+||.+||++++...
T Consensus 185 ~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 185 DSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred cCcccCCchhhCCccccccc
Confidence 47779999999999977544
No 203
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=52.99 E-value=5.5 Score=46.38 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=17.0
Q ss_pred cccccccchhhcccchhhhc
Q 011877 58 DCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~ 77 (475)
+|-.||+||.+||++++...
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k 209 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDK 209 (847)
T ss_pred cChhhCChHhhCCchhcccc
Confidence 68899999999999977543
No 204
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=52.90 E-value=6 Score=38.75 Aligned_cols=36 Identities=8% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|+...+... .++..++...|+.|+.|+.+||+..+.
T Consensus 186 CP~~ai~~~-~~~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 186 CPTRAIEME-DGRPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred CCHhhEEEe-CCcEEEChhhccCHHHHHHHcCCCCcc
Confidence 443444332 345778999999999999999987543
No 205
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=52.77 E-value=4.9 Score=39.76 Aligned_cols=18 Identities=17% Similarity=0.676 Sum_probs=15.8
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
..++||.||-|+.+||..
T Consensus 145 ~~~~CI~Cg~C~saCP~~ 162 (244)
T PRK12385 145 QFSGCINCGLCYAACPQF 162 (244)
T ss_pred HHHhcCcCccccCcCcCc
Confidence 356999999999999975
No 206
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=52.59 E-value=4.9 Score=40.71 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.4
Q ss_pred ccccccccccchhhcccchhh
Q 011877 55 SLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..+.|..|+.|+.+||+.+|.
T Consensus 157 ~~~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 157 IEEYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCCCccHHHHHHhcCccccc
Confidence 357899999999999998875
No 207
>PRK13795 hypothetical protein; Provisional
Probab=52.12 E-value=5.6 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.579 Sum_probs=18.6
Q ss_pred eeccccccccccchhhcccchhh
Q 011877 53 KISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.|+..+|+.||.|+.+||+..+.
T Consensus 608 ~id~~~C~~Cg~C~~aCP~~a~~ 630 (636)
T PRK13795 608 SVDEEKCIHCGKCTEVCPVVKYK 630 (636)
T ss_pred EechhhcCChhHHHhhcCCCeeE
Confidence 34557899999999999987543
No 208
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=51.01 E-value=6.7 Score=42.12 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=20.7
Q ss_pred ccccccccchhhcccchhhhccHHHHHHhhc
Q 011877 57 KDCLACSGCITSAETVMLEKQSLDEFLSNIN 87 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~ 87 (475)
.+|+.||.|..+||..+--.+.+....+.|.
T Consensus 402 ~~C~~Cg~C~~vCP~~i~l~~~ir~~k~~l~ 432 (435)
T TIGR01945 402 MDCIECGCCSYVCPSNIPLVQYIRQAKAKLR 432 (435)
T ss_pred CcCCcCCCcccccCCCCCHHHHHHHHHHHHH
Confidence 3699999999999987543444444444443
No 209
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=50.97 E-value=4.3 Score=46.03 Aligned_cols=21 Identities=19% Similarity=0.653 Sum_probs=17.1
Q ss_pred eeeccccccccccchhhcccc
Q 011877 52 VKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
..-+.+.||.||.||.+|..+
T Consensus 144 y~ydp~qCIlCgRCVeaCqev 164 (978)
T COG3383 144 YIYDPNQCILCGRCVEACQEV 164 (978)
T ss_pred EEecchheeehhHHHHHHHhh
Confidence 344677899999999999854
No 210
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=50.32 E-value=6.5 Score=41.33 Aligned_cols=18 Identities=22% Similarity=0.715 Sum_probs=15.9
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
+.+.|+.||.|..+||+-
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~ 20 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVA 20 (397)
T ss_pred chhhCCCCCCCcccCcCc
Confidence 357899999999999975
No 211
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=49.89 E-value=9.2 Score=38.11 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.6
Q ss_pred ccccccccccchhhcccchh-hhccHHHHHH
Q 011877 55 SLKDCLACSGCITSAETVML-EKQSLDEFLS 84 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li-~~~~~~~~~~ 84 (475)
.+..|..|+.|..+||.++- ....+..+.+
T Consensus 198 gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~ 228 (251)
T PRK12386 198 GLGYCNITKCCTEVCPEHIKITDNALIPMKE 228 (251)
T ss_pred CcccCcCCCCcCCcCCCCcChhHHHHHHHHH
Confidence 46679999999999998752 2233444433
No 212
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=49.68 E-value=10 Score=37.14 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=15.9
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|+.||.|..+||.++
T Consensus 197 i~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 197 VFRCHTIMNCVEVCPKGL 214 (232)
T ss_pred cccCcCcCCcCccccCCC
Confidence 468999999999999864
No 213
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=49.64 E-value=9.1 Score=37.87 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=15.8
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|..||.|..+||.++
T Consensus 202 l~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 202 VWSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhhCcCcccccccCCCCC
Confidence 358999999999999874
No 214
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=49.41 E-value=6.4 Score=45.57 Aligned_cols=21 Identities=19% Similarity=0.612 Sum_probs=18.1
Q ss_pred ceeeccccccccccchhhccc
Q 011877 51 PVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
.+..+.++||.|+.||+.|..
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~e 164 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQ 164 (797)
T ss_pred ceeecccccccCcHHHHHHHh
Confidence 456789999999999999964
No 215
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=49.39 E-value=5.9 Score=38.63 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=19.3
Q ss_pred ccccccccc----------cchhhcccchhhhcc
Q 011877 55 SLKDCLACS----------GCITSAETVMLEKQS 78 (475)
Q Consensus 55 ~~~dCi~Cg----------~Cit~c~~~li~~~~ 78 (475)
...+|+.|+ .|+.+||+.+|.-.+
T Consensus 150 ~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~ 183 (225)
T TIGR03149 150 SADKCNFCRDTNLAEGKLPACVESCPTKALTFGD 183 (225)
T ss_pred ccccCCCCCcchhhCCCCCcccccCccCCEEEec
Confidence 467999999 799999998765433
No 216
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=49.33 E-value=6.3 Score=40.71 Aligned_cols=17 Identities=18% Similarity=0.741 Sum_probs=15.6
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
..+||.||.|..+||..
T Consensus 151 ~~~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 151 TGNCILCGACYSECNAR 167 (329)
T ss_pred hhhCcccCcccccCCCC
Confidence 67899999999999976
No 217
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=49.32 E-value=5.1 Score=37.26 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=20.5
Q ss_pred ceeeccccccccccchhhcccchhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.--..++||+|--|..+||.-+|.
T Consensus 105 Ryp~geerCIACklCeavCPaqait 129 (212)
T KOG3256|consen 105 RYPSGEERCIACKLCEAVCPAQAIT 129 (212)
T ss_pred cCCCcchhhhhHHHHHHhCCcccce
Confidence 4455688999999999999987654
No 218
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=49.31 E-value=10 Score=37.60 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=24.5
Q ss_pred CCccccccCCCCceeeccccccccc---------cchhhcccchhhhcc
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACS---------GCITSAETVMLEKQS 78 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg---------~Cit~c~~~li~~~~ 78 (475)
|+-.++..... .+..++|..|+ .||.+||+.++.-.+
T Consensus 142 CP~~Ai~~~~~---~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~ 187 (244)
T PRK14993 142 CPYDARFINHE---TQTADKCTFCVHRLEAGLLPACVESCVGGARIIGD 187 (244)
T ss_pred cCCCCCEEeCC---CCCcccCcCCcchhhCCCCcccchhcccCCEEEcc
Confidence 55444443222 24568999998 799999998765333
No 219
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=49.22 E-value=9 Score=35.12 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=23.9
Q ss_pred ccccccccc---------cchhhcccchhhhccHHHHHH
Q 011877 55 SLKDCLACS---------GCITSAETVMLEKQSLDEFLS 84 (475)
Q Consensus 55 ~~~dCi~Cg---------~Cit~c~~~li~~~~~~~~~~ 84 (475)
...+|..|+ .|+.+||+.+|.-.+.+++..
T Consensus 120 ~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~~~ 158 (161)
T TIGR02951 120 VMGKCDGCYDRVEKGLRPACVDACPMRALDFGPIDELRA 158 (161)
T ss_pred ccccCCCCHHHHHCCCCCcchhhccccceEEecHHHHHh
Confidence 356999998 899999999887666666554
No 220
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=49.06 E-value=5.8 Score=42.66 Aligned_cols=16 Identities=31% Similarity=0.943 Sum_probs=14.6
Q ss_pred ccccccccchhhcccc
Q 011877 57 KDCLACSGCITSAETV 72 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~ 72 (475)
.+|+.||.|+.+||.+
T Consensus 255 ~~Ci~Cg~CidaCp~a 270 (434)
T TIGR02745 255 LECINCGLCIDACDDV 270 (434)
T ss_pred hhChhhhHHHHhCCCh
Confidence 6899999999999973
No 221
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=48.92 E-value=7.3 Score=32.67 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCceeeccccccccccchhhcccchh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
-.+..++.+.|+.|..|..-||...|
T Consensus 27 v~rPv~d~~kCi~C~~C~~yCPe~~i 52 (91)
T COG1144 27 VFRPVVDEDKCINCKLCWLYCPEPAI 52 (91)
T ss_pred EEeeEEcccccccCceeEEECCchhe
Confidence 34678899999999999999998754
No 222
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=48.74 E-value=6.8 Score=39.58 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=15.0
Q ss_pred cccccccccchhhcccc
Q 011877 56 LKDCLACSGCITSAETV 72 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~ 72 (475)
..+||.||-|..+||+.
T Consensus 186 ~~~CI~CG~C~saCPv~ 202 (276)
T PLN00129 186 MYECILCACCSTSCPSY 202 (276)
T ss_pred hhhCccccccccccCCC
Confidence 35799999999999976
No 223
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=48.56 E-value=6.4 Score=38.79 Aligned_cols=18 Identities=28% Similarity=0.785 Sum_probs=16.1
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
...+||.||-|..+||+.
T Consensus 142 ~~~~CI~CG~C~s~CP~~ 159 (235)
T PRK12575 142 GLYECILCACCSTACPSY 159 (235)
T ss_pred hhhhCcccccccccccCc
Confidence 567899999999999976
No 224
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=48.16 E-value=6.2 Score=42.85 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=26.3
Q ss_pred eccccccccccchhhcccchhhhcc--HHHHHHhhc
Q 011877 54 ISLKDCLACSGCITSAETVMLEKQS--LDEFLSNIN 87 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~~~--~~~~~~~l~ 87 (475)
++...|-.||-|..+||.++++... .++++..++
T Consensus 584 v~~~~C~gCG~C~~aCp~gai~~~~f~~eqi~a~i~ 619 (622)
T COG1148 584 VNPLRCKGCGICSAACPSGAIDLAGFSDEQILAQIE 619 (622)
T ss_pred cChhhhCcccchhhhCCcccchhcccCHHHHHHHHh
Confidence 3556799999999999999887654 556666554
No 225
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=48.07 E-value=7.5 Score=29.86 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=16.7
Q ss_pred CCceeecccccc------ccccchhhccc
Q 011877 49 AEPVKISLKDCL------ACSGCITSAET 71 (475)
Q Consensus 49 ~~~a~I~~~dCi------~Cg~Cit~c~~ 71 (475)
.....++...|. .||.|+.+||+
T Consensus 38 ~~~~~~~~~~c~~~~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 38 VKKWRIDWEKCVSYWDCYGCGICQKVCPF 66 (67)
T ss_pred ccCccchHHhhhcCCCccccchhhccCCC
Confidence 344455555555 99999999996
No 226
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=47.07 E-value=17 Score=33.47 Aligned_cols=60 Identities=18% Similarity=0.427 Sum_probs=39.7
Q ss_pred CeEEEEeCcchhhhhh-hhc--CCChHhHHHHHHHHHHHcCCcEEEechhhhhhhHHHHHHHHHHHH
Q 011877 90 KAVIISLSPQSRASLA-EHF--GISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 153 (475)
Q Consensus 90 k~vV~~iaP~~r~sl~-~~f--g~~~~~~~~kl~~~Lk~lGf~~V~Dts~gadi~~~e~~~E~~~r~ 153 (475)
+.+|++..|..+.-+. ... .+.. ..+=...|+++|+++|+-..|..++.-+ ++++|++.+
T Consensus 38 ~~~v~tF~~~P~~~~~~~~~~~~l~s---~~ek~~~l~~~Gvd~~~~~~F~~~~~~l-s~~~Fi~~i 100 (157)
T PF06574_consen 38 KSVVLTFDPHPKEVLNPDKPPKLLTS---LEEKLELLESLGVDYVIVIPFTEEFANL-SPEDFIEKI 100 (157)
T ss_dssp EEEEEEESS-CHHHHSCTCCGGBSS----HHHHHHHHHHTTESEEEEE-CCCHHCCS--HHHHHHHH
T ss_pred ceEEEEcccCHHHHhcCCCcccCCCC---HHHHHHHHHHcCCCEEEEecchHHHHcC-CHHHHHHHH
Confidence 5678899997766665 211 1222 2445678999999999999888776643 578899874
No 227
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=46.35 E-value=12 Score=37.29 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=15.9
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
.-+|..||.|..+||.++
T Consensus 208 ~~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 208 IADCGNAQNCVRVCPKGI 225 (249)
T ss_pred eeCCcCcCcccccCCCCC
Confidence 378999999999999864
No 228
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=46.34 E-value=9.5 Score=41.00 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=16.1
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|+.||.|..+||.++
T Consensus 342 ~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 342 PYLSSLCGACREVCPVKI 359 (432)
T ss_pred CccchhhhhhhccCCCCC
Confidence 478999999999999974
No 229
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=46.04 E-value=7.3 Score=38.09 Aligned_cols=18 Identities=33% Similarity=0.827 Sum_probs=16.1
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
....|+.||.|..+||..
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~ 156 (232)
T PRK05950 139 GLYECILCACCSTSCPSF 156 (232)
T ss_pred hHHhccccccccccCCcc
Confidence 567999999999999976
No 230
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=46.00 E-value=7.8 Score=39.88 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.8
Q ss_pred cccccccccchhhcccchhhhc
Q 011877 56 LKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
...|-.|+.|+.+||+.+|...
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~~~ 225 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAISKG 225 (314)
T ss_pred cccCcchhHHHhhCCccccCCC
Confidence 3689999999999999987643
No 231
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=46.00 E-value=6.4 Score=44.66 Aligned_cols=22 Identities=23% Similarity=0.739 Sum_probs=18.9
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
.+..+.++||.|..||+.|..+
T Consensus 138 ~v~~dm~RCI~C~RCVR~c~ei 159 (693)
T COG1034 138 LVKYDMNRCILCTRCVRFCKEI 159 (693)
T ss_pred hhhcccccceechhhHHhhhhh
Confidence 3448999999999999999864
No 232
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=45.66 E-value=6.9 Score=41.71 Aligned_cols=15 Identities=20% Similarity=0.873 Sum_probs=13.5
Q ss_pred cccccccchhhcccc
Q 011877 58 DCLACSGCITSAETV 72 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~ 72 (475)
.||-||.|+.+||.-
T Consensus 309 ~CIRCGaC~n~CPvY 323 (459)
T COG1139 309 RCIRCGACLNHCPVY 323 (459)
T ss_pred HhhcchHhhhcChhh
Confidence 599999999999963
No 233
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=44.75 E-value=12 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=23.1
Q ss_pred eeccccccccc------cchhhcccchhhhccHHHHH
Q 011877 53 KISLKDCLACS------GCITSAETVMLEKQSLDEFL 83 (475)
Q Consensus 53 ~I~~~dCi~Cg------~Cit~c~~~li~~~~~~~~~ 83 (475)
.+....|..|| .|+.+||+.++.--+.+++.
T Consensus 125 ~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~~ 161 (181)
T PRK10330 125 KAEANKCDLCNHREDGPACMAACPTHALICVDRNKLE 161 (181)
T ss_pred CceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHHH
Confidence 45567999999 89999999887654444443
No 234
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=44.67 E-value=13 Score=36.75 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=15.9
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
.-.|..||.|..+||..+
T Consensus 205 i~~C~~C~~C~~vCPk~I 222 (239)
T PRK13552 205 VFGCMSLLGCEDNCPKDL 222 (239)
T ss_pred cCCCcCcCccchhCCCCC
Confidence 468999999999999864
No 235
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=44.66 E-value=8.8 Score=38.25 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=19.5
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+....|..|+.|+..||..++..
T Consensus 195 v~~~~~C~~C~~Ci~~CP~~AI~i 218 (263)
T PRK00783 195 VTDLLNCSLCKLCERACPGKAIRV 218 (263)
T ss_pred EeChhhCCCchHHHHhCCCCceEE
Confidence 346677999999999999876654
No 236
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=43.83 E-value=13 Score=38.87 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.9
Q ss_pred ceeeccccccccccchhhcccch
Q 011877 51 PVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
...-..+.|+.||.|.++||..+
T Consensus 48 ~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 48 LYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred hcCCCCCcCcCcCccCcccCCCC
Confidence 34456789999999999999874
No 237
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=43.35 E-value=10 Score=37.76 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=16.5
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
...+|+.||.|..+||..+
T Consensus 210 gv~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 210 GFGNCTNTGECEAVCPKGI 228 (250)
T ss_pred CcccCcccCccccccCCCC
Confidence 3568999999999999875
No 238
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=42.56 E-value=14 Score=38.82 Aligned_cols=18 Identities=33% Similarity=0.826 Sum_probs=16.0
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|+.||.|.++||..+
T Consensus 72 ~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 72 LDRCLTCRNCETTCPSGV 89 (407)
T ss_pred cccCccccchhhhCCCCC
Confidence 578999999999999863
No 239
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=42.02 E-value=11 Score=39.91 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=22.3
Q ss_pred CCceeeccccccccccch--hhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCI--TSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Ci--t~c~~~li~ 75 (475)
..+..++.++|+.|+.|+ .+||+.++.
T Consensus 294 ~~~p~id~dkCi~Cg~C~~~~aCPt~AI~ 322 (391)
T TIGR03287 294 DVRPKYNPERCENCDPCLVEEACPVPAIK 322 (391)
T ss_pred ceeEEEchhhCcCCCCCcCCcCCCHhhEe
Confidence 356678889999999995 899998765
No 240
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=41.93 E-value=8.9 Score=38.09 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=18.4
Q ss_pred ccccccccccchhhcccchhhh
Q 011877 55 SLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
+..+|..|+.|+..||+.++..
T Consensus 197 ~~~~C~~C~~C~~~Cp~~AI~~ 218 (259)
T cd07030 197 DLEDCSLCKLCERACDAGAIRV 218 (259)
T ss_pred ChhhCcCchHHHHhCCCCcEEE
Confidence 4678999999999999876654
No 241
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=40.40 E-value=16 Score=36.85 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.3
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
....|..||.|..+||..+
T Consensus 204 ~i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred cCCcccCcccchhhCCCCC
Confidence 3468999999999999864
No 242
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=40.01 E-value=10 Score=39.98 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=15.7
Q ss_pred ccccccccccchhhcccc
Q 011877 55 SLKDCLACSGCITSAETV 72 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~ 72 (475)
..+.|+.||.|..+||+-
T Consensus 21 ~~~~C~~Cg~C~~~CP~~ 38 (407)
T PRK11274 21 ILRKCVHCGFCTATCPTY 38 (407)
T ss_pred HHHhCccCCCccccCCcc
Confidence 456899999999999974
No 243
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=39.82 E-value=16 Score=36.85 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=16.6
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
....|..||.|..+||.++
T Consensus 242 gl~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKGL 260 (276)
T ss_pred CCCcCcChhhccccCCCCC
Confidence 4588999999999999864
No 244
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=39.08 E-value=14 Score=32.08 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=21.8
Q ss_pred eeecccccccc--ccchhhcccchhhhccHHHHHHhhcCCC
Q 011877 52 VKISLKDCLAC--SGCITSAETVMLEKQSLDEFLSNINKGK 90 (475)
Q Consensus 52 a~I~~~dCi~C--g~Cit~c~~~li~~~~~~~~~~~l~~~k 90 (475)
+.-..++|+.| .-|..+||.. .++.+++..+..++
T Consensus 17 ~~~ea~rC~~c~~~pC~~aCP~~----~dip~~i~~i~~g~ 53 (111)
T PF14691_consen 17 AIEEASRCLQCEDPPCQAACPAH----IDIPEYIRLIREGN 53 (111)
T ss_dssp HHHHHHHS---TT-HHHHTSTT-------HHHHHHHHHCT-
T ss_pred HHHHHhhccCCCCCCcccCCCCC----CcHHHHHHHHHCCC
Confidence 33456789999 7999999987 66778888888775
No 245
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=38.00 E-value=15 Score=38.09 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=24.6
Q ss_pred ecccccccccc-------------chhhcccchhhhccHHHHHHhh
Q 011877 54 ISLKDCLACSG-------------CITSAETVMLEKQSLDEFLSNI 86 (475)
Q Consensus 54 I~~~dCi~Cg~-------------Cit~c~~~li~~~~~~~~~~~l 86 (475)
....+|..|+. |+.+||+.+|.-...+++++..
T Consensus 169 ~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~~~a 214 (328)
T PRK10882 169 GAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELLAEA 214 (328)
T ss_pred cceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHHHHH
Confidence 34578999999 9999999877655555555443
No 246
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=37.63 E-value=11 Score=36.27 Aligned_cols=22 Identities=18% Similarity=0.643 Sum_probs=18.3
Q ss_pred Cceeeccccccccccchhhccc
Q 011877 50 EPVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
-..-|+.++||+|..|+.+|..
T Consensus 11 ~~~~~D~~rCiGC~aC~~AC~~ 32 (203)
T COG0437 11 YAFVIDSSRCIGCKACVVACKE 32 (203)
T ss_pred eEEEEecccccCcHHHHHHHHH
Confidence 3456889999999999999953
No 247
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=37.46 E-value=17 Score=39.31 Aligned_cols=19 Identities=21% Similarity=0.803 Sum_probs=16.4
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
..+.|+.||.|..+||+..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~ 149 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARK 149 (486)
T ss_pred CchhcccCccccccCCCCc
Confidence 4578999999999999763
No 248
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=37.43 E-value=19 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=17.1
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
..+.|+.|+.|.++||..+
T Consensus 50 ~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred ccccCcCcCccchhcCCCC
Confidence 4789999999999999974
No 249
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=37.37 E-value=13 Score=42.44 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=18.6
Q ss_pred ceeeccccccccccchhhcccch
Q 011877 51 PVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
...-..+.|+.||.|+.+||+.+
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~l 381 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNSL 381 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCCC
Confidence 33446688999999999999863
No 250
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=36.34 E-value=18 Score=40.40 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=19.8
Q ss_pred Cceeeccccccccccchhhcccchh
Q 011877 50 EPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
+++.|+. .|+.||.|+.+||+.+|
T Consensus 572 ~~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 572 KEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred CcceeCC-CCcCHHHHHhhCccccC
Confidence 4567777 89999999999998653
No 251
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=36.19 E-value=36 Score=32.46 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=37.4
Q ss_pred cHHHHHHhhcCCCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEechhhhhhh
Q 011877 78 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLT 141 (475)
Q Consensus 78 ~~~~~~~~l~~~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~Dts~gadi~ 141 (475)
.+.+|++.|+..|. |.|. -||++||++..++..+|..++..=-..-|+|- -|-=|-
T Consensus 100 lL~~Fi~yIK~~Kv--v~le-----dla~~f~l~t~~~i~ri~~L~~~g~ltGv~Dd-rGkfIy 155 (188)
T PF09756_consen 100 LLQEFINYIKEHKV--VNLE-----DLAAEFGLRTQDVINRIQELEAEGRLTGVIDD-RGKFIY 155 (188)
T ss_dssp HHHHHHHHHHH-SE--E-HH-----HHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-T-T--EEE
T ss_pred HHHHHHHHHHHcce--eeHH-----HHHHHcCCCHHHHHHHHHHHHHCCCceeeEcC-CCCeEE
Confidence 47789999988764 4444 49999999999999999888888777888887 344443
No 252
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=34.98 E-value=16 Score=42.10 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=18.5
Q ss_pred ceeeccccccccccchhhcccch
Q 011877 51 PVKISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~l 73 (475)
.+.-..++|+.||.|+.+||..+
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l 420 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNEL 420 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCc
Confidence 34445688999999999999863
No 253
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=34.87 E-value=21 Score=36.91 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.8
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...|+.|+.|..+||..+
T Consensus 208 iw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 208 VWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred cccCcChhhhhhhCCCCC
Confidence 468999999999999864
No 254
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=34.69 E-value=16 Score=38.04 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=17.8
Q ss_pred ccccccccchhhcccchhhh
Q 011877 57 KDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 57 ~dCi~Cg~Cit~c~~~li~~ 76 (475)
+.|=.|..|+.+||+.++..
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~ 204 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVA 204 (337)
T ss_pred ccChhhHHHHhhCCcccccC
Confidence 89999999999999987643
No 255
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=34.30 E-value=14 Score=37.55 Aligned_cols=21 Identities=19% Similarity=0.694 Sum_probs=18.4
Q ss_pred ceeeccccccccccchhhccc
Q 011877 51 PVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
-.-|+.++|++|.+|..+|..
T Consensus 23 ~~liD~~kCiGC~aC~~ACk~ 43 (283)
T TIGR01582 23 AKLIDVSSCIGCKACQAACQE 43 (283)
T ss_pred EEEEEcCcCcChHHHHHHHHH
Confidence 457799999999999999964
No 256
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=33.59 E-value=19 Score=41.41 Aligned_cols=22 Identities=14% Similarity=0.499 Sum_probs=10.9
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
...-..+.|+.||.|+.+||..
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~ 414 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNS 414 (784)
T ss_pred HHhhhcccCCCcccchhhCCCC
Confidence 3333445555555555555543
No 257
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=33.20 E-value=24 Score=38.04 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=24.4
Q ss_pred Cceeeccccccccc--cchhhcccchhhhccHHHHHHhhcCC
Q 011877 50 EPVKISLKDCLACS--GCITSAETVMLEKQSLDEFLSNINKG 89 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg--~Cit~c~~~li~~~~~~~~~~~l~~~ 89 (475)
+.+.-..++|+.|+ -|..+||.. .++.++++.+..+
T Consensus 33 ~~~~~~~~~c~~c~~~~C~~~CP~~----~~~~~~~~~~~~g 70 (467)
T TIGR01318 33 GQAQYQADRCLYCGNPYCEWKCPVH----NAIPQWLQLVQEG 70 (467)
T ss_pred HHHHHHHHhcccCCCccccccCCCC----CcHHHHHHHHHCC
Confidence 35566678999998 699999986 3344444444443
No 258
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=32.84 E-value=16 Score=38.57 Aligned_cols=16 Identities=19% Similarity=0.681 Sum_probs=14.4
Q ss_pred cccccccccchhhccc
Q 011877 56 LKDCLACSGCITSAET 71 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~ 71 (475)
.+.|.+||.|...||.
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 3489999999999998
No 259
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=31.66 E-value=20 Score=41.22 Aligned_cols=16 Identities=25% Similarity=0.750 Sum_probs=14.5
Q ss_pred cccccccchhhcccch
Q 011877 58 DCLACSGCITSAETVM 73 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~l 73 (475)
.|+.||.|+.+||..+
T Consensus 438 ~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 438 QCYACGRCEQACPKNI 453 (784)
T ss_pred hhhhhhHHhccCCCCC
Confidence 7999999999999874
No 260
>PF02236 Viral_DNA_bi: Viral DNA-binding protein, all alpha domain; InterPro: IPR003176 This domain represents the N-terminal domain of the viral DNA-binding protein, a multi functional protein involved in DNA replication and transcription control.; GO: 0003677 DNA binding, 0006260 DNA replication, 0006351 transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ADU_A 1ADV_B 2WB0_X 2WAZ_X 1ANV_A.
Probab=30.09 E-value=47 Score=27.67 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCC
Q 011877 181 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 222 (475)
Q Consensus 181 yiEk~~~P~Lip~LS~vkSPq~i~g~liK~~~~~~~~i~p~~ 222 (475)
|+.+.+ +.+-...|+-||=..++||++-.+.-+.-||.|.+
T Consensus 44 ~l~~~k-~~~~LTFSS~KSf~~~mGRfL~~~v~~~agl~~~~ 84 (86)
T PF02236_consen 44 WLNEEK-RGLQLTFSSQKSFTHMMGRFLAAFVYKYAGLAPKN 84 (86)
T ss_dssp HHHHHH-TT---SS--HHHHHHHHHHHHHHHHHHHHT---TT
T ss_pred HHHhcC-cCCCcceechHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 566777 88888999999999999999999998888887753
No 261
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=29.09 E-value=31 Score=37.41 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCceeeccccccccc--cchhhcccchhhh
Q 011877 49 AEPVKISLKDCLACS--GCITSAETVMLEK 76 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg--~Cit~c~~~li~~ 76 (475)
+.........|..|+ .|+.+||+++|.+
T Consensus 173 ~~~m~y~p~~C~HC~nP~CV~ACPtGAI~k 202 (492)
T TIGR01660 173 NTFMMYLPRLCEHCLNPACVASCPSGAIYK 202 (492)
T ss_pred CceEEECCCcCcCCCcccchhhCccCCeEE
Confidence 334556778999998 9999999998753
No 262
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=28.80 E-value=1e+02 Score=31.31 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=42.3
Q ss_pred CeEEEEeCcchhhhhhhhcC--CChHhHHHHHHHHHHHcCCcEEEechhhhhhhHHHHHHHHHHHHh
Q 011877 90 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 154 (475)
Q Consensus 90 k~vV~~iaP~~r~sl~~~fg--~~~~~~~~kl~~~Lk~lGf~~V~Dts~gadi~~~e~~~E~~~r~~ 154 (475)
+.+|++..|..+.-|..... +.. ...=...|.++|+++|+-..|-.++.-+ ++++|++.+-
T Consensus 31 ~~~V~tF~phP~~~~~~~~~~~l~~---~~~k~~~l~~~Gvd~~~~~~F~~~~a~l-s~e~Fi~~~l 93 (288)
T TIGR00083 31 PPAVLLFEPHPSEQFNWLTAPALTP---LEDKARQLQIKGVEQLLVVVFDEEFANL-SALQFIDQLI 93 (288)
T ss_pred CEEEEEeCCChHHHhCccCCCCCCC---HHHHHHHHHHcCCCEEEEeCCCHHHHcC-CHHHHHHHHH
Confidence 57899999987766643221 221 2233467889999999999998777644 5778987653
No 263
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=27.81 E-value=21 Score=36.96 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=16.8
Q ss_pred eccccccccccchhhcccch
Q 011877 54 ISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~l 73 (475)
-....|+.||-|..+||+-.
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~ 25 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYR 25 (388)
T ss_pred HHHHhcCCCCcccCcCCCcc
Confidence 35678999999999999853
No 264
>PF13592 HTH_33: Winged helix-turn helix
Probab=27.68 E-value=37 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=25.2
Q ss_pred chhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEechh
Q 011877 99 QSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSC 136 (475)
Q Consensus 99 ~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~Dts~ 136 (475)
..+.-|...||+.. ....+..+|+.|||.+.-=...
T Consensus 9 ~i~~~I~~~fgv~y--s~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 9 EIAAYIEEEFGVKY--SPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred HHHHHHHHHHCCEE--cHHHHHHHHHHcCCccccCCCC
Confidence 34456778898655 2457788999999998655443
No 265
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=27.58 E-value=36 Score=38.43 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=23.1
Q ss_pred eeeccccccccc------cchhhcccchhhhccHHHH
Q 011877 52 VKISLKDCLACS------GCITSAETVMLEKQSLDEF 82 (475)
Q Consensus 52 a~I~~~dCi~Cg------~Cit~c~~~li~~~~~~~~ 82 (475)
..+....|..|+ .|+.+||+.+|.-.+.+++
T Consensus 114 ~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~ 150 (654)
T PRK12769 114 VKATAHKCDLCAGRENGPACVENCPADALQLVTEQAL 150 (654)
T ss_pred eeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHH
Confidence 456678999999 8999999987754443333
No 266
>PF12225 MTHFR_C: Methylene-tetrahydrofolate reductase C terminal; InterPro: IPR022026 This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C-terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C-terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=27.09 E-value=27 Score=29.74 Aligned_cols=18 Identities=39% Similarity=0.901 Sum_probs=15.0
Q ss_pred Cceeeccccccccccchh
Q 011877 50 EPVKISLKDCLACSGCIT 67 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit 67 (475)
....+-+++|-+||+|+-
T Consensus 14 ~~~~~~~~~C~~CG~C~L 31 (97)
T PF12225_consen 14 REVKVFLERCRACGDCVL 31 (97)
T ss_pred eeccchhccCCCCCCccc
Confidence 456677899999999986
No 267
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=26.92 E-value=29 Score=41.34 Aligned_cols=18 Identities=22% Similarity=0.661 Sum_probs=16.0
Q ss_pred ccccc----cccchhhcccchh
Q 011877 57 KDCLA----CSGCITSAETVML 74 (475)
Q Consensus 57 ~dCi~----Cg~Cit~c~~~li 74 (475)
++|+. ||.|+.+||..++
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Ai 902 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRAN 902 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhh
Confidence 79996 9999999999853
No 268
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.28 E-value=1.4e+02 Score=26.81 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=32.5
Q ss_pred ccHHHHHHhhcCCC-eEEEEeCcchhhhhhhhcCCChHhH---HHHHHHHHHHcCCcEEEech
Q 011877 77 QSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGISPLQV---FKKLTTFLKSLGVKSIFDTS 135 (475)
Q Consensus 77 ~~~~~~~~~l~~~k-~vV~~iaP~~r~sl~~~fg~~~~~~---~~kl~~~Lk~lGf~~V~Dts 135 (475)
.+.+-+++.+++.. .+.++|-| +---.+.+-|++...- ..+|...+++-|| .|.|.+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~~~~r~~~y~kI~~~~~~~gf-~v~D~s 96 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF-NVADFS 96 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--HHHHHHHHHHHHHHHHTTT---EEE-T
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEecc
Confidence 45666778776643 44455555 3334455668776443 3899999999999 899886
No 269
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=25.85 E-value=23 Score=37.38 Aligned_cols=16 Identities=31% Similarity=1.032 Sum_probs=14.2
Q ss_pred cccccccchhhcccch
Q 011877 58 DCLACSGCITSAETVM 73 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~l 73 (475)
+||.|+.|+.+|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 6999999999998753
No 270
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=25.27 E-value=39 Score=34.86 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.6
Q ss_pred ceeeccccccccc--cchhhcccchhhh
Q 011877 51 PVKISLKDCLACS--GCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg--~Cit~c~~~li~~ 76 (475)
........|..|+ .|+.+||+++|.+
T Consensus 123 ~~~y~p~~C~hC~nP~Cv~aCPtgAI~k 150 (321)
T TIGR03478 123 YYFYLPRICNHCTNPACLAACPTGAIYK 150 (321)
T ss_pred eEEEecccCCCCCCccchhhCCcCcEEE
Confidence 4446788999999 8999999998754
No 271
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=24.61 E-value=24 Score=35.95 Aligned_cols=18 Identities=6% Similarity=-0.274 Sum_probs=14.4
Q ss_pred ccccchhhcccchhhhcc
Q 011877 61 ACSGCITSAETVMLEKQS 78 (475)
Q Consensus 61 ~Cg~Cit~c~~~li~~~~ 78 (475)
.||+|+.+||++++...+
T Consensus 257 ~~g~cvdvCPvGAL~~~d 274 (297)
T PTZ00305 257 NNMPVSQLCPVGKLYLGD 274 (297)
T ss_pred CCCceeeECCCcccccCC
Confidence 478899999999875544
No 272
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=24.55 E-value=44 Score=36.03 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.7
Q ss_pred Cceeecccccccccc--chhhcccc
Q 011877 50 EPVKISLKDCLACSG--CITSAETV 72 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~--Cit~c~~~ 72 (475)
..+.-..++|+.|+. |+..||..
T Consensus 37 ~~~~~~a~rc~~c~~~~C~~~CP~~ 61 (471)
T PRK12810 37 EQAKIQAARCMDCGIPFCHWGCPVH 61 (471)
T ss_pred HHHHHHHHhccCCCCCcccccCCCC
Confidence 456666789999977 89999975
No 273
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=24.16 E-value=82 Score=30.22 Aligned_cols=88 Identities=18% Similarity=0.309 Sum_probs=45.5
Q ss_pred cccccccchhhcccchhhhccHHHHHHhhcC---CCeEEEEeCcchhhhhhh--hcCCChHhHHHHHHHHHHHcCCcEEE
Q 011877 58 DCLACSGCITSAETVMLEKQSLDEFLSNINK---GKAVIISLSPQSRASLAE--HFGISPLQVFKKLTTFLKSLGVKSIF 132 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~---~k~vV~~iaP~~r~sl~~--~fg~~~~~~~~kl~~~Lk~lGf~~V~ 132 (475)
.|..|.-|..-||.+ ..+.+++..|.+ +.-.++=+++..+.-+.- .+|--.-.....+...-+.+||+.+=
T Consensus 84 ~C~tCytC~eRCPr~----v~i~~vv~~lR~~a~k~G~~~~~~~~~~~vl~~V~~tG~~av~i~~~~~~~R~~~~l~~~~ 159 (195)
T COG1150 84 ACVTCYTCTERCPRG----VKIVEVVKALRNIAVKEGLIEPMLKAHREVLETVITTGNHAVPINKELRAKRKALGLDELP 159 (195)
T ss_pred eeeechhhhhhCCCC----CCHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHhCccccccchhHHHHhccCCCCCCc
Confidence 599999999999986 233444444433 222222223322221111 12311111225666666789999888
Q ss_pred echhhhhhhHHHHHHHHH
Q 011877 133 DTSCSRDLTLIEACNEFI 150 (475)
Q Consensus 133 Dts~gadi~~~e~~~E~~ 150 (475)
+|.- ...+++|+..-|+
T Consensus 160 ~t~~-~~~~ale~~~~i~ 176 (195)
T COG1150 160 ETTK-KIQEALESVQLII 176 (195)
T ss_pred hhhh-hhHHHHHHHHHHH
Confidence 8776 2333344444344
No 274
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=23.89 E-value=1.1e+02 Score=29.53 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHcCCC--CCcE-EEecCCcccccCCCCCcCCCC---CCChHHHHHHHHHHHh
Q 011877 366 GFQNLQNIVRKVKMRKC--DYQF-VEVMACPSGCLNGGGQIKPKP---GQSPKELIKTLETIYL 423 (475)
Q Consensus 366 G~~ni~~ll~~lk~g~~--~~df-IEvMACpgGCinGgGq~~~~~---~~~~~~~~~~~~~~y~ 423 (475)
++.++++-+. ++.|+. ++-| +|=+.|-|-|+|+|-.-...+ ..+.+.+.+-++++-.
T Consensus 132 i~ea~~k~lg-i~~Gett~d~~Ftl~e~eClGaCvnaPmi~IND~yyedlt~k~l~eIle~L~~ 194 (233)
T KOG3196|consen 132 ILEACKKQLG-IKVGETTKDGLFTLEEVECLGACVNAPMIAINDDYYEDLTPKKLVEILEDLKA 194 (233)
T ss_pred HHHHHHHHhC-ccccccccccceeeecchhhhhhccCceeeecchhhccCCHHHHHHHHHHHhc
Confidence 3444444432 445653 3333 677889999999998665543 2455666655555543
No 275
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.85 E-value=3.7e+02 Score=28.60 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCCCCCCC--CcccccC
Q 011877 270 TGEVLDLIQLKAVNFEALEE--SPLDKML 296 (475)
Q Consensus 270 ~~El~~ll~~~~i~~~~l~~--~~~d~~~ 296 (475)
.+||.++|++.|++...+++ +.+|.++
T Consensus 173 ~~eik~lL~~~Gl~v~~l~d~s~~~d~~~ 201 (417)
T cd01966 173 VEELKDIIEAFGLEPIILPDLSGSLDGHL 201 (417)
T ss_pred HHHHHHHHHHcCCceEEecCcccccCCCC
Confidence 48999999999999766654 2345443
No 276
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.51 E-value=89 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=21.9
Q ss_pred eCcchhhhhhhhcCCChHhHHHHHHHHHHHcCC
Q 011877 96 LSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 128 (475)
Q Consensus 96 iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf 128 (475)
.+|.+| =|+..||++...++.+...+|.+.|+
T Consensus 24 ~~Pt~r-EIa~~~g~~S~~tv~~~L~~Le~kG~ 55 (65)
T PF01726_consen 24 YPPTVR-EIAEALGLKSTSTVQRHLKALERKGY 55 (65)
T ss_dssp S---HH-HHHHHHTSSSHHHHHHHHHHHHHTTS
T ss_pred CCCCHH-HHHHHhCCCChHHHHHHHHHHHHCcC
Confidence 356444 48999999855566777888888887
No 277
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.31 E-value=1.4e+02 Score=31.16 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=52.0
Q ss_pred eccccccccccchh-------------hcccchhhhccHHHHHHhhcCCCeEEEEeCcchhhhhhhhcCCC------hHh
Q 011877 54 ISLKDCLACSGCIT-------------SAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS------PLQ 114 (475)
Q Consensus 54 I~~~dCi~Cg~Cit-------------~c~~~li~~~~~~~~~~~l~~~k~vV~~iaP~~r~sl~~~fg~~------~~~ 114 (475)
+.+..|++|=.|-. ++|.++.+- -+.+++...+.+++-+++ .|..+|.+||-. ...
T Consensus 151 l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~----l~Aka~GA~~VVi~d~~~-~Rle~Ak~~Ga~~~~~~~~~~ 225 (354)
T KOG0024|consen 151 LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTG----LVAKAMGASDVVITDLVA-NRLELAKKFGATVTDPSSHKS 225 (354)
T ss_pred cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHH----HHHHHcCCCcEEEeecCH-HHHHHHHHhCCeEEeeccccc
Confidence 34446666666654 346655443 567778777888888887 688999999842 111
Q ss_pred HHHHHHHHHHH-cC---CcEEEechhhhhhhH
Q 011877 115 VFKKLTTFLKS-LG---VKSIFDTSCSRDLTL 142 (475)
Q Consensus 115 ~~~kl~~~Lk~-lG---f~~V~Dts~gadi~~ 142 (475)
....+.+..++ +| ||++||.+ |++.++
T Consensus 226 ~~~~~~~~v~~~~g~~~~d~~~dCs-G~~~~~ 256 (354)
T KOG0024|consen 226 SPQELAELVEKALGKKQPDVTFDCS-GAEVTI 256 (354)
T ss_pred cHHHHHHHHHhhccccCCCeEEEcc-CchHHH
Confidence 12334444432 56 99999998 445553
No 278
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=23.03 E-value=34 Score=40.74 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=17.6
Q ss_pred ecccccccc----ccchhhcccch
Q 011877 54 ISLKDCLAC----SGCITSAETVM 73 (475)
Q Consensus 54 I~~~dCi~C----g~Cit~c~~~l 73 (475)
-..++|++| |.|+.+||..+
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A 906 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRA 906 (1019)
T ss_pred ccccccCCcccccchhhhhCCccc
Confidence 456799999 99999999987
No 279
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=21.90 E-value=1.2e+02 Score=26.93 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCceeeccccccccccchhhcccchhhhccHHHHHHhhcCCCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHH-cC
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LG 127 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~-lG 127 (475)
.|++.+...-+-.|+-|...- ..+.++.+.+++....|+.|++. +|+.++.+....+..+.++ .|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~-------~~l~~l~~~~~~~~~~v~~i~~~-------~~~~~~~d~~~~~~~f~~~~~~ 86 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNY-------RALQELHRELGPSHFNVLAFPCN-------QFGESEPDSSKEIESFARRNYG 86 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhH-------HHHHHHHHHHhhCCeEEEEEecc-------ccccCCCCCHHHHHHHHHHhcC
Confidence 355554444455555554332 33446677776655666777652 3444322223456666654 55
Q ss_pred Cc
Q 011877 128 VK 129 (475)
Q Consensus 128 f~ 129 (475)
+.
T Consensus 87 ~~ 88 (153)
T TIGR02540 87 VT 88 (153)
T ss_pred CC
Confidence 54
No 280
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=21.70 E-value=41 Score=40.65 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCceeeccccccccccchh-hccc
Q 011877 49 AEPVKISLKDCLACSGCIT-SAET 71 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit-~c~~ 71 (475)
+.|+.|+.+.|..|+-|+. .||+
T Consensus 654 grK~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 654 GRKRRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred CccEEECHHHCCCccccccCCCCC
Confidence 4589999999999999999 9996
No 281
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=21.70 E-value=56 Score=34.99 Aligned_cols=31 Identities=29% Similarity=0.733 Sum_probs=21.2
Q ss_pred ccccccccc----cchhhcccchhhhccHHHHHHhhcCC
Q 011877 55 SLKDCLACS----GCITSAETVMLEKQSLDEFLSNINKG 89 (475)
Q Consensus 55 ~~~dCi~Cg----~Cit~c~~~li~~~~~~~~~~~l~~~ 89 (475)
.-++|+.|. -|...||.. .++.+++..+..+
T Consensus 24 ea~rc~~c~~~~~~C~~~CP~~----~~i~~~~~~~~~g 58 (449)
T TIGR01316 24 EAQRCLNCKDATKPCIKGCPVH----VPIPEFIAKIQEG 58 (449)
T ss_pred HHhhCcCccCCCCChhhhCCCC----CCHHHHHHHHHCC
Confidence 348899998 799999986 3444444444443
No 282
>PRK12831 putative oxidoreductase; Provisional
Probab=21.59 E-value=54 Score=35.36 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=17.5
Q ss_pred ceeeccccccccc--cchhhcccc
Q 011877 51 PVKISLKDCLACS--GCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg--~Cit~c~~~ 72 (475)
.+.---++|+.|+ -|...||..
T Consensus 34 ~~~~ea~rc~~c~~~~C~~~CP~~ 57 (464)
T PRK12831 34 EAVKEASRCLQCKKPKCVKGCPVS 57 (464)
T ss_pred HHHHHHHhhcCCCCCchhhhCCCC
Confidence 3444578999998 599999986
No 283
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=21.59 E-value=41 Score=36.82 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=39.3
Q ss_pred ccCCCCCcccCCCcccccccccCC-------------CCCCCCCCccccc---------cCCCCceeeccccccccccch
Q 011877 9 LRIGDLSDFIAPSQNCVVSLKKAT-------------FKNPDKPQVSTSS---------KQQAEPVKISLKDCLACSGCI 66 (475)
Q Consensus 9 ~~~~~lnD~i~p~~~Ci~p~~~~~-------------~~~~~~~~~~~~~---------~~~~~~a~I~~~dCi~Cg~Ci 66 (475)
++|.+||==++=.-.|+.-+.+.. +.+.+.|+++..- ....+...-.+-|||-||-|-
T Consensus 334 ~~l~~ld~PVtK~t~~Ll~~~~~e~~~~~~~~sCi~C~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca 413 (529)
T COG4656 334 FKLPTLDAPVTKTTNGLLALTKKELLEPIKEQSCIRCSLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACA 413 (529)
T ss_pred ccccccCCceecccceEEecCccccccchhhhccccHHHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcch
Confidence 456666655555566665543311 1223446655443 223344455788999999999
Q ss_pred hhcccch
Q 011877 67 TSAETVM 73 (475)
Q Consensus 67 t~c~~~l 73 (475)
-+||..+
T Consensus 414 ~vCPs~i 420 (529)
T COG4656 414 YVCPSNI 420 (529)
T ss_pred hcCCCCC
Confidence 9999874
No 284
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=21.43 E-value=19 Score=26.99 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCc
Q 011877 117 KKLTTFLKSLGVK 129 (475)
Q Consensus 117 ~kl~~~Lk~lGf~ 129 (475)
.+|..+++++||+
T Consensus 50 ~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 50 EKIIEAIEKAGYE 62 (62)
T ss_dssp HHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCcC
Confidence 6899999999985
No 285
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=20.82 E-value=51 Score=37.87 Aligned_cols=35 Identities=29% Similarity=0.703 Sum_probs=23.7
Q ss_pred ceeeccccccccc--cchhhcccchhhhccHHHHHHhhcCC
Q 011877 51 PVKISLKDCLACS--GCITSAETVMLEKQSLDEFLSNINKG 89 (475)
Q Consensus 51 ~a~I~~~dCi~Cg--~Cit~c~~~li~~~~~~~~~~~l~~~ 89 (475)
.|.---++|+.|+ .|+..||.. .++.++++.+..+
T Consensus 323 ~a~~ea~rC~~c~~~~C~~~Cp~~----~~i~~~~~~~~~g 359 (752)
T PRK12778 323 QAMTEAKRCLDCKNPGCVEGCPVG----IDIPRFIKNIERG 359 (752)
T ss_pred HHHHHHHHhhcCCCCcccccCcCC----CCHHHHHHHHHCC
Confidence 4555578899998 589999976 3444555555443
No 286
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=20.49 E-value=55 Score=33.68 Aligned_cols=26 Identities=8% Similarity=0.200 Sum_probs=18.2
Q ss_pred ccccchhhcccchhhhccHHHHHHhh
Q 011877 61 ACSGCITSAETVMLEKQSLDEFLSNI 86 (475)
Q Consensus 61 ~Cg~Cit~c~~~li~~~~~~~~~~~l 86 (475)
.||.|+.+||+..-....+-++.+..
T Consensus 268 ~C~~C~~~CPf~~~~~s~iH~vvk~t 293 (314)
T TIGR02486 268 GCGVCQAVCPFNKKPNSWIHDVVRST 293 (314)
T ss_pred CCCCCeeECCCCCCCcchHHHHHHHH
Confidence 59999999999833334456666544
No 287
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.31 E-value=1.6e+02 Score=28.49 Aligned_cols=76 Identities=33% Similarity=0.419 Sum_probs=47.5
Q ss_pred ceeeccccc-cccccchhhccc-----chhhhccHHHHHHhhcCC--CeEEEEeCcchhhhhhhhcCCChHh-HHHHHHH
Q 011877 51 PVKISLKDC-LACSGCITSAET-----VMLEKQSLDEFLSNINKG--KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTT 121 (475)
Q Consensus 51 ~a~I~~~dC-i~Cg~Cit~c~~-----~li~~~~~~~~~~~l~~~--k~vV~~iaP~~r~sl~~~fg~~~~~-~~~kl~~ 121 (475)
.+-|...-| +.|..|-|..-. .-....+.+++++.+++. +..-|+++= |-|... ...-|..
T Consensus 24 ~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~V~lTG----------GEP~~~~~l~~Ll~ 93 (212)
T COG0602 24 SVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARGVSLTG----------GEPLLQPNLLELLE 93 (212)
T ss_pred eEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcceEEEeC----------CcCCCcccHHHHHH
Confidence 345556688 789999874211 122455678888888762 222344442 333111 2457888
Q ss_pred HHHHcCCcEEEechh
Q 011877 122 FLKSLGVKSIFDTSC 136 (475)
Q Consensus 122 ~Lk~lGf~~V~Dts~ 136 (475)
.|+..||+..++|+-
T Consensus 94 ~l~~~g~~~~lETng 108 (212)
T COG0602 94 LLKRLGFRIALETNG 108 (212)
T ss_pred HHHhCCceEEecCCC
Confidence 999999999999964
Done!