Query 011877
Match_columns 475
No_of_seqs 190 out of 1371
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lx4_A Fe-hydrogenase; HYDA, H 100.0 4E-104 1E-108 823.4 34.6 381 68-467 17-451 (457)
2 3c8y_A Iron hydrogenase 1; dit 100.0 1E-93 3.5E-98 778.4 28.7 385 51-463 182-574 (574)
3 1hfe_L Protein (Fe-only hydrog 100.0 1.9E-82 6.4E-87 666.5 31.2 368 39-435 45-418 (421)
4 1q16_B Respiratory nitrate red 99.9 8.8E-31 3E-35 277.9 -11.8 198 39-283 196-450 (512)
5 1hfe_S Protein (Fe-only hydrog 99.8 2E-20 7E-25 162.8 2.5 78 393-470 13-101 (123)
6 1ti6_B Pyrogallol hydroxytrans 97.7 9E-07 3.1E-11 87.4 -5.5 107 39-146 80-213 (274)
7 1kqf_B FDH-N beta S, formate d 96.8 0.00014 4.7E-09 72.3 -1.4 48 91-142 223-276 (294)
8 2ivf_B Ethylbenzene dehydrogen 95.7 0.0028 9.6E-08 64.5 1.4 37 91-127 271-321 (352)
9 1bc6_A 7-Fe ferredoxin; electr 95.3 0.011 3.8E-07 45.8 3.5 50 37-87 18-69 (77)
10 7fd1_A FD1, protein (7-Fe ferr 94.1 0.021 7E-07 47.3 2.3 36 39-75 20-55 (106)
11 1h98_A Ferredoxin; electron tr 94.1 0.02 6.9E-07 44.5 2.1 26 50-75 30-55 (78)
12 2fdn_A Ferredoxin; electron tr 93.5 0.031 1.1E-06 40.2 2.0 36 39-75 18-53 (55)
13 1f2g_A Ferredoxin II; electron 92.9 0.027 9.3E-07 40.8 0.9 21 51-72 1-21 (58)
14 2v2k_A Ferredoxin; iron, trans 92.9 0.045 1.5E-06 45.0 2.3 36 39-75 20-55 (105)
15 1dax_A Ferredoxin I; electron 92.8 0.03 1E-06 41.5 1.1 23 51-74 3-25 (64)
16 1xer_A Ferredoxin; electron tr 92.7 0.037 1.3E-06 45.1 1.5 27 49-75 35-61 (103)
17 1rof_A Ferredoxin; electron tr 92.6 0.043 1.5E-06 39.7 1.7 22 51-72 2-23 (60)
18 3eun_A Ferredoxin; electron tr 92.5 0.042 1.4E-06 43.1 1.6 24 53-76 2-25 (82)
19 3mm5_B Sulfite reductase, diss 92.5 0.036 1.2E-06 56.5 1.5 37 39-75 220-257 (366)
20 3or1_B Sulfite reductase beta; 92.4 0.035 1.2E-06 57.1 1.2 26 50-75 249-274 (386)
21 2zvs_A Uncharacterized ferredo 92.3 0.042 1.4E-06 43.5 1.4 24 53-76 2-25 (85)
22 2fdn_A Ferredoxin; electron tr 92.2 0.055 1.9E-06 38.9 1.8 24 52-76 2-25 (55)
23 3j16_B RLI1P; ribosome recycli 92.2 0.039 1.3E-06 60.0 1.4 34 47-80 43-76 (608)
24 1rgv_A Ferredoxin; electron tr 92.2 0.041 1.4E-06 42.9 1.2 22 54-75 3-24 (80)
25 3eun_A Ferredoxin; electron tr 92.2 0.067 2.3E-06 42.0 2.4 47 39-86 18-75 (82)
26 1rgv_A Ferredoxin; electron tr 92.2 0.09 3.1E-06 40.9 3.1 49 37-86 16-75 (80)
27 1jb0_C Photosystem I iron-sulf 92.1 0.043 1.5E-06 42.4 1.2 25 51-75 2-26 (80)
28 2vpz_B NRFC protein; oxidoredu 92.0 0.072 2.4E-06 49.4 2.8 42 35-76 66-107 (195)
29 2fgo_A Ferredoxin; allochromat 91.9 0.049 1.7E-06 42.6 1.3 24 53-76 2-25 (82)
30 3mm5_A Sulfite reductase, diss 91.8 0.055 1.9E-06 56.2 1.8 37 38-75 266-302 (418)
31 1iqz_A Ferredoxin; iron-sulfer 91.7 0.049 1.7E-06 42.6 1.1 22 51-72 3-24 (81)
32 2fgo_A Ferredoxin; allochromat 91.7 0.1 3.5E-06 40.8 2.9 48 38-86 17-75 (82)
33 1dwl_A Ferredoxin I; electron 91.6 0.078 2.7E-06 38.1 2.0 22 51-72 1-22 (59)
34 1kqf_B FDH-N beta S, formate d 90.9 0.072 2.5E-06 52.6 1.6 38 39-76 112-150 (294)
35 1jnr_B Adenylylsulfate reducta 90.9 0.042 1.4E-06 48.8 -0.1 40 39-78 25-66 (150)
36 1sj1_A Ferredoxin; thermostabi 90.5 0.077 2.6E-06 39.1 1.1 21 51-71 3-23 (66)
37 1dwl_A Ferredoxin I; electron 90.5 0.12 4.1E-06 37.1 2.1 27 49-75 29-57 (59)
38 3gyx_B Adenylylsulfate reducta 90.4 0.072 2.5E-06 48.1 1.0 39 39-77 24-64 (166)
39 3i9v_9 NADH-quinone oxidoreduc 90.4 0.074 2.5E-06 47.8 1.1 26 51-76 90-115 (182)
40 1xer_A Ferredoxin; electron tr 90.4 0.059 2E-06 43.9 0.4 24 52-75 76-99 (103)
41 3or1_A Sulfite reductase alpha 90.0 0.083 2.8E-06 55.1 1.2 36 38-74 283-318 (437)
42 1rof_A Ferredoxin; electron tr 89.9 0.1 3.5E-06 37.6 1.4 28 49-76 29-58 (60)
43 2ivf_B Ethylbenzene dehydrogen 89.8 0.11 3.8E-06 52.7 1.9 26 49-74 174-199 (352)
44 2zvs_A Uncharacterized ferredo 89.7 0.21 7.3E-06 39.3 3.2 38 37-75 16-60 (85)
45 1dax_A Ferredoxin I; electron 89.4 0.076 2.6E-06 39.2 0.3 21 56-76 41-61 (64)
46 1jb0_C Photosystem I iron-sulf 89.2 0.088 3E-06 40.5 0.5 22 54-75 42-63 (80)
47 1f2g_A Ferredoxin II; electron 89.2 0.12 4.2E-06 37.2 1.3 24 52-75 31-56 (58)
48 1bc6_A 7-Fe ferredoxin; electr 88.4 0.15 5.2E-06 39.2 1.4 25 52-76 1-27 (77)
49 3i9v_9 NADH-quinone oxidoreduc 86.7 0.16 5.6E-06 45.5 0.7 21 55-75 49-69 (182)
50 7fd1_A FD1, protein (7-Fe ferr 86.6 0.17 5.9E-06 41.6 0.8 24 53-76 2-27 (106)
51 1h98_A Ferredoxin; electron tr 85.8 0.21 7E-06 38.6 0.8 24 53-76 2-27 (78)
52 3gyx_B Adenylylsulfate reducta 85.6 0.23 7.9E-06 44.8 1.1 26 51-76 1-31 (166)
53 2gmh_A Electron transfer flavo 85.1 0.25 8.5E-06 53.1 1.3 37 39-75 528-569 (584)
54 1hfe_L Protein (Fe-only hydrog 84.7 0.28 9.4E-06 50.8 1.4 26 51-76 27-52 (421)
55 3bk7_A ABC transporter ATP-bin 84.2 0.31 1.1E-05 52.9 1.5 29 48-76 58-86 (607)
56 2v2k_A Ferredoxin; iron, trans 83.8 0.28 9.7E-06 40.1 0.8 25 52-76 1-27 (105)
57 1jnr_B Adenylylsulfate reducta 83.2 0.35 1.2E-05 42.8 1.2 25 51-75 2-31 (150)
58 2wdq_B Succinate dehydrogenase 81.9 0.49 1.7E-05 44.7 1.8 28 55-82 202-229 (238)
59 1h0h_B Formate dehydrogenase ( 81.5 0.33 1.1E-05 45.5 0.4 36 41-76 89-127 (214)
60 2c42_A Pyruvate-ferredoxin oxi 81.3 0.34 1.2E-05 56.8 0.5 25 51-75 736-762 (1231)
61 1iqz_A Ferredoxin; iron-sulfer 81.3 0.21 7.2E-06 38.9 -0.9 23 54-76 46-68 (81)
62 1kf6_B Fumarate reductase iron 80.0 0.61 2.1E-05 44.2 1.7 19 55-73 200-218 (243)
63 2c42_A Pyruvate-ferredoxin oxi 76.2 0.72 2.5E-05 54.1 1.1 26 51-76 680-705 (1231)
64 3i9v_3 NADH-quinone oxidoreduc 74.6 1 3.5E-05 50.2 1.8 21 58-78 219-239 (783)
65 2wdq_B Succinate dehydrogenase 74.3 0.84 2.9E-05 43.1 0.8 21 54-74 144-164 (238)
66 1kf6_B Fumarate reductase iron 74.0 0.68 2.3E-05 43.8 0.1 21 54-74 143-163 (243)
67 3c8y_A Iron hydrogenase 1; dit 70.8 1.1 3.6E-05 48.3 0.7 23 49-71 137-159 (574)
68 2bs2_B Quinol-fumarate reducta 70.5 0.76 2.6E-05 43.5 -0.5 21 54-74 146-166 (241)
69 2pa8_D DNA-directed RNA polyme 69.5 1 3.5E-05 43.6 0.2 25 51-76 195-219 (265)
70 1gte_A Dihydropyrimidine dehyd 68.4 1.7 5.8E-05 49.9 1.8 23 52-75 980-1003(1025)
71 2h88_B Succinate dehydrogenase 67.9 1.4 4.9E-05 42.0 0.9 21 54-74 153-173 (252)
72 1sj1_A Ferredoxin; thermostabi 67.8 1 3.5E-05 32.7 -0.1 19 58-76 45-63 (66)
73 2h88_B Succinate dehydrogenase 67.4 2 6.8E-05 41.0 1.8 31 55-85 211-241 (252)
74 2bs2_B Quinol-fumarate reducta 66.9 2 6.9E-05 40.5 1.7 31 54-84 203-233 (241)
75 3cf4_A Acetyl-COA decarboxylas 66.0 1.4 4.8E-05 49.3 0.4 37 53-89 449-485 (807)
76 2vpz_B NRFC protein; oxidoredu 64.6 1.6 5.5E-05 40.1 0.5 21 52-72 6-26 (195)
77 3i9v_3 NADH-quinone oxidoreduc 64.3 1.7 5.7E-05 48.5 0.6 21 51-71 173-193 (783)
78 1gte_A Dihydropyrimidine dehyd 63.6 1.6 5.6E-05 50.0 0.4 24 48-71 942-965 (1025)
79 1wi9_A Protein C20ORF116 homol 62.4 6.3 0.00021 30.6 3.4 49 79-134 9-57 (72)
80 1h0h_B Formate dehydrogenase ( 59.8 4 0.00014 38.0 2.2 29 55-83 133-170 (214)
81 3vr8_B Iron-sulfur subunit of 53.0 3.2 0.00011 40.6 0.4 18 56-73 179-196 (282)
82 1ti6_B Pyrogallol hydroxytrans 46.8 4.1 0.00014 39.6 -0.0 45 39-86 109-168 (274)
83 3vr8_B Iron-sulfur subunit of 45.0 7.6 0.00026 37.9 1.6 19 55-73 235-253 (282)
84 3cf4_A Acetyl-COA decarboxylas 40.8 7.9 0.00027 43.3 1.1 20 54-73 412-431 (807)
85 1q16_B Respiratory nitrate red 33.2 12 0.00041 39.6 0.9 27 50-76 175-203 (512)
86 2vdc_G Glutamate synthase [NAD 33.2 13 0.00045 38.3 1.2 23 50-72 13-37 (456)
87 2hm3_A Nematocyst outer WALL a 22.8 22 0.00074 22.2 0.4 9 391-399 7-15 (31)
88 4e5s_A MCCFLIKE protein (BA_56 20.2 1.1E+02 0.0036 30.3 5.1 62 86-154 9-75 (331)
89 5nul_A Flavodoxin; electron tr 20.2 2.2E+02 0.0074 23.2 6.4 81 62-153 46-135 (138)
No 1
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=3.8e-104 Score=823.37 Aligned_cols=381 Identities=31% Similarity=0.563 Sum_probs=334.1
Q ss_pred hcccchhhhccHHHHHHhhcCC------CeEEEEeCcchhhhhhhhcCCChHhH-HHHHHHHHHHcCCcEEEechhhhhh
Q 011877 68 SAETVMLEKQSLDEFLSNINKG------KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDL 140 (475)
Q Consensus 68 ~c~~~li~~~~~~~~~~~l~~~------k~vV~~iaP~~r~sl~~~fg~~~~~~-~~kl~~~Lk~lGf~~V~Dts~gadi 140 (475)
.+++.+.+.+++++|+++|++. |++||+||||+|++|+++||++++.. .++|+++||+|||++||||+||||+
T Consensus 17 ~~~~a~~~~~~~~~v~~aL~~~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADl 96 (457)
T 3lx4_A 17 AAPAAEAPLSHVQQALAELAKPKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADL 96 (457)
T ss_dssp --------CCHHHHHHHHHHSCTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHH
T ss_pred cccccccccchHHHHHHHHhCcCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 3456666778899999999875 68999999999999999999988765 6999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCC
Q 011877 141 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP 220 (475)
Q Consensus 141 ~~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P~Lip~LS~vkSPq~i~g~liK~~~~~~~~i~p 220 (475)
+++|+++||++|+++..... ...+.++|||||||||||+||||+| |+|+||||+++|||||+|+++|+||+++.|++|
T Consensus 97 ti~EEa~Ef~~r~~~~l~~~-~~~~~~lPmiTScCPgWV~yiEk~y-PeLlp~LSt~kSPqqm~G~liK~y~a~~~gi~p 174 (457)
T 3lx4_A 97 TIMEEGSELLHRLTEHLEAH-PHSDEPLPMFTSCCPGWIAMLEKSY-PDLIPYVSSCKSPQMMLAAMVKSYLAEKKGIAP 174 (457)
T ss_dssp HHHHHHHHHHHHHHHHHCC------CCSSEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHhhhccc-cccCCCCceEecCCHHHHHHHHHhC-cccccccCCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999985321100 0014578999999999999999999 999999999999999999999999999999999
Q ss_pred CCeEEEEEEecchhhHhhhchhhhhhccccccccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCCCCCcccccCCCCC
Q 011877 221 DEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 300 (475)
Q Consensus 221 ~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~ll~~~~i~~~~l~~~~~d~~~~~~s 300 (475)
++|+|||||||+|||+||.|++|..+ ...+.++||+||||+||.+||++.+||+.++++.++|.+++..|
T Consensus 175 ~~i~vV~ImPC~AKK~EA~R~e~~~~----------~~~g~~dVD~VLTtrEL~~mik~~gId~~~l~~~~~D~p~g~~s 244 (457)
T 3lx4_A 175 KDMVMVSIMPCTRKQSEADRDWFCVD----------ADPTLRQLDHVITTVELGNIFKERGINLAELPEGEWDNPMGVGS 244 (457)
T ss_dssp GGEEEEEEESCSSHHHHHTCTTCBCC-------------CCBSSCEEEEHHHHHHHHHHTTCCGGGSCCCCCCCTTSSSS
T ss_pred ccEEEEEEEcccchHHHhcCcccccc----------cccCCccccEEeeHHHHHHHHHHcCCChhhCCcccccccccccC
Confidence 99999999999999999999988531 00135799999999999999999999999999999999999999
Q ss_pred CCCccccccCCcccHHHHHHHHHHHHHhccccccccceeeecCCC-cEEEEEEeC-------------------------
Q 011877 301 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVE------------------------- 354 (475)
Q Consensus 301 ~~g~~~~~~~~SGG~~e~v~r~~~~~l~~~~~~~~~~~~~~rn~d-~~e~~l~~~------------------------- 354 (475)
+.|++||. ||||+||++|++++.++|.++. .++|+.+||.| ++|+++.+.
T Consensus 245 gaG~iFg~---sGGV~EAv~r~a~~~~~g~~~~-~~~~~~vrg~~g~kea~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 3lx4_A 245 GAGVLFGT---TGGVMEAALRTAYELFTGTPLP-RLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHG 320 (457)
T ss_dssp SCSCCSSB---CCCHHHHHHHHHHHHHHSSCCC-CCCCEECTTCTTEEEEEEEECCCTTSHHHHHHHHCCC---------
T ss_pred CCceecCC---cccHHHHHHHHHHHHhhCCCCc-cccceeecCCCCceEEEEEeccccccchhhhhhhhhhhhhcccccc
Confidence 99999988 9999999999999999999884 78999999985 999998881
Q ss_pred -------------------CeeEEEEEEEechHHHHHHHHHHHcCCCCCcEEEecCCcccccCCCCCcCCCCCCChHHHH
Q 011877 355 -------------------GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 415 (475)
Q Consensus 355 -------------------g~~~~~~a~~~G~~ni~~ll~~lk~g~~~~dfIEvMACpgGCinGgGq~~~~~~~~~~~~~ 415 (475)
|...+|+|+||||+|++++|+++|+|+.+|||||||||||||||||||+++.. ...+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~l~vav~~G~~n~~~ll~~~k~G~~~y~fVEvMACPgGCi~GgGQp~~~~---~~~~~ 397 (457)
T 3lx4_A 321 TPGPLAWDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTD---KAITQ 397 (457)
T ss_dssp --CCSCCCSCEEECCTTCCCEEEEEEEEEESHHHHHHHHHHHHHTSSCCSEEEEESSTTCGGGCTTSCCCSC---TTHHH
T ss_pred cccccccccccccccccCCCCeEEEEEEEcCHHHHHHHHHHHHcCCCCccEEEECCCCccccCCcccccccc---HHHHH
Confidence 33458999999999999999999999999999999999999999999999753 23455
Q ss_pred HHHHHHHhhc--ccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeeeccccc
Q 011877 416 KTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 467 (475)
Q Consensus 416 ~~~~~~y~~~--~~~~~~~~n~~v~~ly~~~l~~p~~~~~~~llhT~y~~~~~~ 467 (475)
+|++.+|..+ ..+|.|++||.+++||++||++|+++++|+||||+|+++.+.
T Consensus 398 ~r~~~ly~~d~~~~~r~s~eNp~v~~lY~~~l~~p~s~~ah~lLHT~y~~~~~~ 451 (457)
T 3lx4_A 398 KRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGVE 451 (457)
T ss_dssp HHHHTSSCHHHHTSBCCGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCCCTTCC-
T ss_pred HHHHHHHHHhhcCCccCCCcCHHHHHHHHHHhCCCCcHHHHHhcCccccccCcc
Confidence 6888999854 367899999999999999999999999999999999998664
No 2
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=100.00 E-value=1e-93 Score=778.45 Aligned_cols=385 Identities=30% Similarity=0.557 Sum_probs=352.7
Q ss_pred ceeeccccccccccchhhcccchhh-hccHHHHHHhhcC-CCeEEEEeCcchhhhhhhhcCCChH-hHHHHHHHHHHHcC
Q 011877 51 PVKISLKDCLACSGCITSAETVMLE-KQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-QVFKKLTTFLKSLG 127 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~-~~~~~~~~~~l~~-~k~vV~~iaP~~r~sl~~~fg~~~~-~~~~kl~~~Lk~lG 127 (475)
...|+.++|+.||+|+.+||+++|. ..+..++++.+.+ ++.+++++||++++|+++.|+.+++ .+.++|..+||++|
T Consensus 182 ~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~~~~v~~~l~~~~~~~v~~~ap~v~~s~ge~f~~~~g~~~~~~l~~alk~lG 261 (574)
T 3c8y_A 182 EKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLG 261 (574)
T ss_dssp GCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHT
T ss_pred cceechhhCCcchhHHHhhccCCccccccHHHHHHhhccccceeEEeeCCceeeechhhhccccCchHHHHHHHHHHHcC
Confidence 3568899999999999999998775 4558889999874 7889999999999999999998765 45689999999999
Q ss_pred CcEEEechhhhhhhHHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHH
Q 011877 128 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 207 (475)
Q Consensus 128 f~~V~Dts~gadi~~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P~Lip~LS~vkSPq~i~g~l 207 (475)
|++|+||++++|++++|++.||++++++ ++.+|||||||||||+|+||+| |+|+||||+++|||+++|++
T Consensus 262 f~~v~dt~~~adl~~~ee~~e~ld~~~~---------~~~~p~itScCP~wv~~~e~~~-p~l~~~ls~~~SP~~~~g~~ 331 (574)
T 3c8y_A 262 FDKIFDINFGADMTIMEEATELVQRIEN---------NGPFPMFTSCCPGWVRQAENYY-PELLNNLSSAKSPQQIFGTA 331 (574)
T ss_dssp CSEEEEHHHHHHHHHHHHHHHHHHHHHH---------TCSCCEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHH
T ss_pred CCEEeecccchhHHHHHHHHHHHHHHhh---------cCCceEEEecCHHHHHHHHHhc-hhhcCcCccCCCHHHHHHHH
Confidence 9999999999999999999999999874 4678999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhCCCCCCeEEEEEEecchhhHhhhchhhhhhccccccccccCCCCCCCceEEECHHHHHHHHHhcCCCCCCC
Q 011877 208 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL 287 (475)
Q Consensus 208 iK~~~~~~~~i~p~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El~~ll~~~~i~~~~l 287 (475)
+|+|+++++|++|++|+|||||||+|||+||.|+++..+ +.++||+||||+||.+||++.+||+.++
T Consensus 332 ~K~~~~~~~~~~~~~i~~v~i~PC~aKK~Ea~r~~~~~~-------------~~~~vD~vlT~~El~~~~~~~~i~~~~l 398 (574)
T 3c8y_A 332 SKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEKD-------------GLRDIDAVITTRELAKMIKDAKIPFAKL 398 (574)
T ss_dssp HTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEET-------------TEESCSEEEEHHHHHHHHHHTTCCGGGC
T ss_pred HHhhhHhhcCCCcCcEEEEEEeCCCcccccccccccccC-------------CCCccCEEEcHHHHHHHHHHcCCCcccC
Confidence 999999999999999999999999999999999987532 2479999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCccccccCCcccHHHHHHHHHHHHHhccccccccceeeecCC-CcEEEEEEeCCeeEEEEEEEec
Q 011877 288 EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYG 366 (475)
Q Consensus 288 ~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~v~r~~~~~l~~~~~~~~~~~~~~rn~-d~~e~~l~~~g~~~~~~a~~~G 366 (475)
+++++|.+++..|+.|++||. ||||++|++|++++.++|.++. .++|+.+||. |++|+++.++|.+ +++|+|||
T Consensus 399 ~~~~~d~~~~~~s~~g~~f~~---sGGv~ea~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~e~~~~~~~~~-~~~~~~~G 473 (574)
T 3c8y_A 399 EDSEADPAMGEYSGAGAIFGA---TGGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNK-YNVAVING 473 (574)
T ss_dssp CCCCCCGGGTCCCHHHHTTTS---TTHHHHHHHHHHHHHHHTCCCS-CCCCGGGCSSCSEEEEEEEETTEE-EEEEEEES
T ss_pred CcccccccccccCcCcccccC---cccHHHHHHHHHHHHhcCCCCc-ccceeeecCCCCcEEEEEEeCCeE-EEEEEEeC
Confidence 999999999999999999987 9999999999999999999875 5899999986 7999999999986 79999999
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEecCCcccccCCCCCcCCCCCC--ChHHHHHHHHHHHhhc--ccCCCCCCChHHHHHHH
Q 011877 367 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ--SPKELIKTLETIYLEN--VMLADPFKNPLVRSLYD 442 (475)
Q Consensus 367 ~~ni~~ll~~lk~g~~~~dfIEvMACpgGCinGgGq~~~~~~~--~~~~~~~~~~~~y~~~--~~~~~~~~n~~v~~ly~ 442 (475)
|+|++++|+++|+|+.+|||||+|||||||||||||+++.... ..+.+.+|++.+|..+ ...|.|++||.+++||+
T Consensus 474 ~~n~~~~l~~~~~g~~~~~fiEvmaCpgGCi~G~gq~~~~~~~~~~~~~~~~r~~~ly~~d~~~~~~~~~~n~~~~~ly~ 553 (574)
T 3c8y_A 474 ASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQ 553 (574)
T ss_dssp HHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHHHHHHSCHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEECCCCCCccCCCCcccCcccccchHHHHHHHHHHHHHhhccCCccCcccCHHHHHHHH
Confidence 9999999999999999999999999999999999999875310 1346788999999743 46789999999999999
Q ss_pred HHhcCCCChhhhcceeeeeec
Q 011877 443 EWLEQPGSEKAKKHVHTEYHP 463 (475)
Q Consensus 443 ~~l~~p~~~~~~~llhT~y~~ 463 (475)
+||++|.++++|+||||+||+
T Consensus 554 ~~l~~p~~~~~~~llht~y~~ 574 (574)
T 3c8y_A 554 NYFGKPGEGRAHEILHFKYKK 574 (574)
T ss_dssp HTTCSTTSHHHHHHSBCCCCC
T ss_pred HHhcCCCCHHHHHHhcccCcC
Confidence 999999999999999999985
No 3
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=100.00 E-value=1.9e-82 Score=666.49 Aligned_cols=368 Identities=28% Similarity=0.517 Sum_probs=313.7
Q ss_pred CCccccccCCCCceee-ccccccccccchhhcccchhhh-c-cHHHHHHhhcCC-CeEEEEeCcchhhhhhhhcCCChHh
Q 011877 39 PQVSTSSKQQAEPVKI-SLKDCLACSGCITSAETVMLEK-Q-SLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQ 114 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I-~~~dCi~Cg~Cit~c~~~li~~-~-~~~~~~~~l~~~-k~vV~~iaP~~r~sl~~~fg~~~~~ 114 (475)
|+..++.........| +.++|+.||+|+.+||+.++.. + ...++.+.+++. +.+|+++||++++|+++.|++++++
T Consensus 45 CP~~ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~~v~~~l~d~~~~vv~~~ap~v~~slge~fg~~~g~ 124 (421)
T 1hfe_L 45 CPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAMPAPAVRYALGDAFGMPVGS 124 (421)
T ss_dssp CTTCCCBCCTTSCCBCCCGGGCCCCCTTGGGCTTCCEEESCCCHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCTTC
T ss_pred cCcCceecccccceeecChhhCCchhhHHHhhCcCCcccccccchhhhhhhcccccceeeecccceeehhHHHhCCCccc
Confidence 6666665444444566 8999999999999999998765 4 467788888775 4789999999999999999998777
Q ss_pred H-HHHHHHHHHHcCCcEEEechhhhhhhHHHHHHHHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCC
Q 011877 115 V-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 193 (475)
Q Consensus 115 ~-~~kl~~~Lk~lGf~~V~Dts~gadi~~~e~~~E~~~r~~~~~~~~~~~~~~~~P~itS~CPgwV~yiEk~~~P~Lip~ 193 (475)
. .++|.++||++||++||||++++|++++|++.||+++++.. ..+.+|+|||||||||+|+|++| |+++||
T Consensus 125 ~~~~kl~~aLk~lGf~~v~dT~~~ad~~~~ee~~e~~~~~k~~-------~~~~~p~~Ts~CP~wv~~~e~~~-p~ll~~ 196 (421)
T 1hfe_L 125 VTTGKMLAALQKLGFAHCWDTEFTADVTIWEEGSEFVERLTKK-------SDMPLPQFTSCCPGWQKYAETYY-PELLPH 196 (421)
T ss_dssp CCHHHHHHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHTTS-------SCSCSSEECCCCHHHHHHHHHHC-GGGGGG
T ss_pred ccHHHHHHHHHhhcCCccccccccchHHHHHHHHHHHHHHhhc-------CcccCcccccCCHHHHHHHHHhh-HHHHhh
Confidence 6 79999999999999999999999999999999999998531 12468999999999999999999 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCCCCCeEEEEEEecchhhHhhhchhhhhhccccccccccCCCCCCCceEEECHHHH
Q 011877 194 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEV 273 (475)
Q Consensus 194 LS~vkSPq~i~g~liK~~~~~~~~i~p~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLT~~El 273 (475)
||+++|||+|+|.++|.|+.+..+++|++|++|+||||+|||.|+.|+++... +.++||+||||+||
T Consensus 197 ls~~~sP~~i~~~lik~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~~~~~~-------------~~~~vD~vlT~~El 263 (421)
T 1hfe_L 197 FSTCKSPIGMNGALAKTYGAERMKYDPKQVYTVSIMPCIAKKYEGLRPELKSS-------------GMRDIDATLTTREL 263 (421)
T ss_dssp BCSBCCHHHHHHHHHTTHHHHHHTCCGGGEEEEEEESCSHHHHHHTCTTCCTT-------------SSCSCCEEEEHHHH
T ss_pred ccCCCCCceeehhhhchhhhhhcCCChhhEEEEEEeCCcchHHHhcCcccccc-------------CCCCCCeeeeHHHH
Confidence 99999999999999999999999999999999999999999999999987432 25799999999999
Q ss_pred HHHHHhcCCCCCCCCCCcccccCCCCCCCCccccccCCcccHHHHHHHHHHHHHhccccccccceeeecCC-CcEEEEEE
Q 011877 274 LDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE 352 (475)
Q Consensus 274 ~~ll~~~~i~~~~l~~~~~d~~~~~~s~~g~~~~~~~~SGG~~e~v~r~~~~~l~~~~~~~~~~~~~~rn~-d~~e~~l~ 352 (475)
.+||++.+|++.+++++++|.+++..|+.|++||. ||||++|++|++++.++|.++. .++|+.+||. |++|+++.
T Consensus 264 ~~~~~~~gi~~~~l~~~~~d~~~~~~s~~g~~fg~---sGGv~ea~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~e~~~~ 339 (421)
T 1hfe_L 264 AYMIKKAGIDFAKLPDGKRDSLMGESTGGATIFGV---TGGVMEAALRFAYEAVTGKKPD-SWDFKAVRGLDGIKEATVN 339 (421)
T ss_dssp HHHHHHTTCCGGGCCCCCCCTTTCCCCHHHHGGGS---TTHHHHHHHHHHHHHHHSSCCS-CSCCGGGCSSCSEEEEEEE
T ss_pred HHHHHHcCCCcccCCcccccccccccCCCccccCC---CcCHHHHHHHHHHHHhcCCCCc-cccceeeccCCCceEEEEe
Confidence 99999999999999999999999999999999987 9999999999999999999885 5899999984 89999999
Q ss_pred eCCeeEEEEEEEechHHHHHHHHHHHcCCCCCcEEEecCCcccccCCCCCcCCCCCCChHHHHHHHHHHHhhcccCCCCC
Q 011877 353 VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 432 (475)
Q Consensus 353 ~~g~~~~~~a~~~G~~ni~~ll~~lk~g~~~~dfIEvMACpgGCinGgGq~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 432 (475)
++|.. +++|+||||+|++++|+++|+|+.+|||||+|||||||||||||++.+. ..+.+.+|++.+|..+.. +.|+
T Consensus 340 ~~~~~-~~~~~~~G~~n~~~~l~~~k~g~~~~~fiEvmaCpgGCi~G~gq~~~~~--~~~~~~~r~~~~y~~~~~-~~~~ 415 (421)
T 1hfe_L 340 VGGTD-VKVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPGGCVCGGGQPVMPG--VLEAMDRTTTRLYAGLKK-RLAM 415 (421)
T ss_dssp ETTEE-EEEEEEESGGGHHHHHHHHHTTCCCCSEEEEESSTTSGGGCTTSCCCTT--SSCCC------------------
T ss_pred cCCeE-EEEEEEcCHHHHHHHHHHHHcCCCCCcEEEECCCCCCCcCCCCccCCCC--CHHHHHHHHHHHHHHhhh-hcCh
Confidence 99864 8999999999999999999999999999999999999999999998754 346678899999976643 5565
Q ss_pred CCh
Q 011877 433 KNP 435 (475)
Q Consensus 433 ~n~ 435 (475)
+|.
T Consensus 416 ~~~ 418 (421)
T 1hfe_L 416 ASA 418 (421)
T ss_dssp ---
T ss_pred hhc
Confidence 553
No 4
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=99.94 E-value=8.8e-31 Score=277.87 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=154.8
Q ss_pred CCccccccC-CCCceeeccccccccccchhhcccchhhhc----------------------------------------
Q 011877 39 PQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLEKQ---------------------------------------- 77 (475)
Q Consensus 39 ~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~---------------------------------------- 77 (475)
|+..++... ..+.+.|+.++|+.||.|+.+||+.+|...
T Consensus 196 CP~gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~~AI~~~~~~~~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~~~~ 275 (512)
T 1q16_B 196 CPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLY 275 (512)
T ss_dssp CTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEETTTTEEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEEEEE
T ss_pred CCcCcEEeecCCCeEEECHHHCCCchHHHhhCCccceecccCCCCcccCcCCCchhhcCCCCceEeeCchhhhhcccccc
Confidence 455555432 467788888899999999998888665321
Q ss_pred cHHHHHHhhcC--CCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCc-EEEechhhhhhhHHHHHHHHHHHHh
Q 011877 78 SLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVK-SIFDTSCSRDLTLIEACNEFIARYK 154 (475)
Q Consensus 78 ~~~~~~~~l~~--~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~-~V~Dts~gadi~~~e~~~E~~~r~~ 154 (475)
+.++++++++. ++.++++++| +|..+|+ .+|+++||++||+ +|+||++++ +++++++||++++.
T Consensus 276 d~~~v~e~l~~~~~k~v~~~~~p----~~~~~f~-------~kvi~ALk~lGf~~~v~eta~~A--~i~ee~~E~~~~l~ 342 (512)
T 1q16_B 276 DADAIERAASTENEKDLYQRQLD----VFLDPND-------PKVIEQAIKDGIPLSVIEAAQQS--PVYKMAMEWKLALP 342 (512)
T ss_dssp EGGGHHHHHTCSSGGGHHHHHHT----TEECTTC-------HHHHHHHHHTTCCHHHHHHHTTC--HHHHHHTTSCCCEE
T ss_pred CHHHHHHHHhcccccceEEEecc----cccCccc-------HHHHHHHHHcCCCceEeeccccc--HHHHHHHHHHHHhh
Confidence 12345555532 3566666666 6888887 4999999999999 999999999 67888988887654
Q ss_pred hcccCcccccCCCCCceecC---ChHH---HHHHH-Hh--cCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCeEE
Q 011877 155 QSQESDDERSNSSLPMLSSA---CPGW---ICYAE-KQ--LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 225 (475)
Q Consensus 155 ~~~~~~~~~~~~~~P~itS~---CPgw---V~yiE-k~--~~P~Lip~LS~vkSPq~i~g~liK~~~~~~~~i~p~~i~~ 225 (475)
..+.|++||| ||+| |+|+| ++ | |+|+||||+++|||+++|+++|++.+ ++|++
T Consensus 343 ----------~~p~~~ttscv~ycP~~~~~v~~ie~~~~~~-P~l~~~ls~~~SPm~~~a~l~K~~~~-------~~v~~ 404 (512)
T 1q16_B 343 ----------LHPEYRTLPMVWYVPPLSPIQSAADAGELGS-NGILPDVESLRIPVQYLANLLTAGDT-------KPVLR 404 (512)
T ss_dssp ----------SCGGGSSCCSEEEECCCCCBCCCSSSCCCBT-TBTSCCGGGBSSCHHHHHHHHSTTCH-------HHHHH
T ss_pred ----------cCCcCCcccCccccCCcHHHHHHHHhcccCC-ccccccccccchHHHHHHHHhhhcCC-------ccEEE
Confidence 2346899999 9999 99999 98 9 99999999999999999999999744 55654
Q ss_pred EEEEecchhhHhhhchhhhhhccccccccccCCCCCCCc----eEEECHHHHHHHHHhcCCC
Q 011877 226 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV----DSVLTTGEVLDLIQLKAVN 283 (475)
Q Consensus 226 V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~V----D~VLT~~El~~ll~~~~i~ 283 (475)
| +||+||.|+++.+.. ..+..|+ |+|||++||.+|++..+|.
T Consensus 405 v------~kk~ea~R~~~~~~~----------~~~~~d~~~~~d~~lT~~e~~~m~r~~~i~ 450 (512)
T 1q16_B 405 A------LKRMLAMRHYKRAET----------VDGKVDTRALEEVGLTEAQAQEMYRYLAIA 450 (512)
T ss_dssp H------HHHHHHHHHHHHHHH----------TTCCCCCHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred E------echhhhccHhhhhcc----------CCCcccchhHhhcCCCHHHHHHHHHHhCcc
Confidence 4 999999999885310 0124667 9999999999999998775
No 5
>1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D*
Probab=99.79 E-value=2e-20 Score=162.83 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=53.4
Q ss_pred cccccCCCCCcCCCCCCC---------hHHHHHHHHHHHhhc--ccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeee
Q 011877 393 PSGCLNGGGQIKPKPGQS---------PKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 461 (475)
Q Consensus 393 pgGCinGgGq~~~~~~~~---------~~~~~~~~~~~y~~~--~~~~~~~~n~~v~~ly~~~l~~p~~~~~~~llhT~y 461 (475)
||||||||||+.+..... .+.+.+|++.+|..+ ..+|.|++||.|++||++||++|+++++|+||||+|
T Consensus 13 PgGCInGGGQp~~~~~~~~~~~~~~~~~~~~~~R~e~LY~~D~~~~iR~sheNp~V~~LY~e~Lg~P~s~kAheLLHT~Y 92 (123)
T 1hfe_S 13 KVACVTTGAALIGIRMTGKAVAAVKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSYLEKPLGHKSHDLLHTHW 92 (123)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCC
T ss_pred cceeeccCCccCCCcccchhhhcccccHHHHHHHHHHHHHHhhcCcccCCCcCHHHHHHHHHHHcCCCcHHHHHHhCccc
Confidence 999999999998865433 678899999999743 477899999999999999999999999999999999
Q ss_pred ecccccccc
Q 011877 462 HPVVKSITA 470 (475)
Q Consensus 462 ~~~~~~~~~ 470 (475)
+++++..++
T Consensus 93 ~~r~k~~~~ 101 (123)
T 1hfe_S 93 FDKSKGVKE 101 (123)
T ss_dssp CCCTHHHHH
T ss_pred ccccccccc
Confidence 999776543
No 6
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=97.70 E-value=9e-07 Score=87.37 Aligned_cols=107 Identities=7% Similarity=-0.040 Sum_probs=67.7
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhhhccHHH-------HHHhhcC----C------------CeEEEE
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEKQSLDE-------FLSNINK----G------------KAVIIS 95 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~~-------~~~~l~~----~------------k~vV~~ 95 (475)
|+. ++.....+.+.|+.+.|+.||.|+.+||+.++....... -...++. + -..+.-
T Consensus 80 CP~-Ai~~~~~g~v~id~~~CigC~~C~~~CP~~Ai~~~~~~~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~ 158 (274)
T 1ti6_B 80 GNG-AVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLK 158 (274)
T ss_dssp TTT-SEEECTTSCEEECTTTTTTCGGGGGGCSSCCCEEETTTTEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEE
T ss_pred ChH-HhhhccCCcEEechhhccchHHHHhhCccCCeEEEcccCccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcC
Confidence 555 555445678999999999999999999998765322100 0111111 1 111222
Q ss_pred eC-cchhhhhhhh--cCCChHhHHHHHHHHHHHcCCcEEE-echhhhhhhHHHHH
Q 011877 96 LS-PQSRASLAEH--FGISPLQVFKKLTTFLKSLGVKSIF-DTSCSRDLTLIEAC 146 (475)
Q Consensus 96 ia-P~~r~sl~~~--fg~~~~~~~~kl~~~Lk~lGf~~V~-Dts~gadi~~~e~~ 146 (475)
+. |+++..+.+. |++.++...+..+.+++.+||++|| |++|++|++++|++
T Consensus 159 ~~dp~v~~~~~~~~~~~l~~~~~t~p~v~y~~~~~f~~~~l~~~~~a~~~~~~~~ 213 (274)
T 1ti6_B 159 TTPEAMAKKVEEEGLEVIKPELGTKPRVYYKNLYRFEKNYVTAGILVQGDCFEGA 213 (274)
T ss_dssp ECHHHHHHHHHHHTCBCSSGGGCCCCSEEEESTHHHHCEEEEEEEEETTEECTTC
T ss_pred CCcHHHHHHHhhccccccCcccCCCCeEEEEcCCCceeEeeccccccccccccCC
Confidence 22 3344444444 7776654344445678899999999 99999999988765
No 7
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=96.77 E-value=0.00014 Score=72.34 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=34.5
Q ss_pred eEEEEe----CcchhhhhhhhcCCCh--HhHHHHHHHHHHHcCCcEEEechhhhhhhH
Q 011877 91 AVIISL----SPQSRASLAEHFGISP--LQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 142 (475)
Q Consensus 91 ~vV~~i----aP~~r~sl~~~fg~~~--~~~~~kl~~~Lk~lGf~~V~Dts~gadi~~ 142 (475)
.++.++ +| ++..+|+..+ .....++..+||.|||..|+++++|+++..
T Consensus 223 ~v~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 276 (294)
T 1kqf_B 223 HVMYVLHHADQP----ELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY 276 (294)
T ss_dssp SEEEEETTTTCG----GGTTTCCSSCCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCCc----hhhccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665 66 4666665311 223578899999999999999999988763
No 8
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=95.69 E-value=0.0028 Score=64.48 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=27.4
Q ss_pred eEEEEeCcch--------------hhhhhhhcCCChHhHHHHHHHHHHHcC
Q 011877 91 AVIISLSPQS--------------RASLAEHFGISPLQVFKKLTTFLKSLG 127 (475)
Q Consensus 91 ~vV~~iaP~~--------------r~sl~~~fg~~~~~~~~kl~~~Lk~lG 127 (475)
..|+.++|.+ |+.|++.||-....+.++|+++++.|-
T Consensus 271 ~yv~~~ap~~~~~~~~~~~~~~~p~~~l~~~fg~~~~~~~~~~~~~~~~~~ 321 (352)
T 2ivf_B 271 YYVPPMGARGFGEDGEITDKTRIPLDVLEGLFGPEVKRVLAVLHTERENMR 321 (352)
T ss_dssp EEECCCCCEEECTTSSEEEEESSCHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccccccccccccccHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 3456778887 899999999333344499999998753
No 9
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=95.35 E-value=0.011 Score=45.85 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.8
Q ss_pred CCCCccccccCCCCceeeccccccccccchhhcccchhhh--ccHHHHHHhhc
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK--QSLDEFLSNIN 87 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~--~~~~~~~~~l~ 87 (475)
..++..++... .+...|+.+.|+.||.|+.+||+.+|.. ....++++.+.
T Consensus 18 ~~Cp~~ai~~~-~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~ 69 (77)
T 1bc6_A 18 EVCPVDCIHEG-EDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQ 69 (77)
T ss_dssp TTCTTCCEEEC-SSSEEECTTTCCSCCSHHHHSGGGSSEETTTSCHHHHHHHH
T ss_pred HhcccccEEeC-CCcEEECcccCcCccCCHhhcCccceEecCCCHHHHHHHHH
Confidence 34555555432 3567889999999999999999987653 33556666554
No 10
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=94.15 E-value=0.021 Score=47.31 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=26.7
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|+...+.. ..+.+.|+.+.|+.||.|+.+||+.+|.
T Consensus 20 CP~~ai~~-~~~~~~i~~~~C~~Cg~C~~~CP~~ai~ 55 (106)
T 7fd1_A 20 CPVDCFYE-GPNFLVIHPDECIDCALCEPECPAQAIF 55 (106)
T ss_dssp CTTCCEEE-CSSCEEECTTTCCCCCTTGGGCTTCCEE
T ss_pred cCccceEc-CCCcEEECcccCCChhhhHHhCCChhhh
Confidence 44444442 2356788999999999999999998664
No 11
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=94.08 E-value=0.02 Score=44.52 Aligned_cols=26 Identities=15% Similarity=0.581 Sum_probs=22.7
Q ss_pred Cceeeccccccccccchhhcccchhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+...++.+.|+.||.|+.+||+.+|.
T Consensus 30 ~~~~~~~~~C~~C~~C~~~CP~~Ai~ 55 (78)
T 1h98_A 30 DQFYIHPEECIDCGACVPACPVNAIY 55 (78)
T ss_dssp SSEEECTTTCCCCCTHHHHCTTCCEE
T ss_pred CEEEECcccCCcHhHHHHhCCccceE
Confidence 56788899999999999999998764
No 12
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=93.46 E-value=0.031 Score=40.19 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++...+... .++..++.+.|+.||.|+.+||+.+|.
T Consensus 18 CP~~ai~~~-~~~~~~~~~~C~~C~~C~~~CP~~ai~ 53 (55)
T 2fdn_A 18 CPVNAISSG-DDRYVIDADTCIDCGACAGVCPVDAPV 53 (55)
T ss_dssp CTTCCEECC-SSSCEECTTTCCCCCHHHHTCTTCCEE
T ss_pred CCccccCcC-CCEEEeccccCcChhChHHHcccccee
Confidence 444444322 234668888899999999999987653
No 13
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=92.88 E-value=0.027 Score=40.81 Aligned_cols=21 Identities=33% Similarity=1.048 Sum_probs=18.5
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
++.|+ +.|++||.|+.+||++
T Consensus 1 ~v~id-~~C~~C~~C~~~CP~~ 21 (58)
T 1f2g_A 1 PIEVN-DDCMACEACVEICPDV 21 (58)
T ss_dssp CCBCT-TTCCCCCHHHHHCTTT
T ss_pred CcEEC-CcCccchHHHHhCCcc
Confidence 35788 9999999999999984
No 14
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=92.86 E-value=0.045 Score=44.98 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++..++... .+.+.|+.+.|+.||.|+.+||+.+|.
T Consensus 20 CP~~ai~~~-~~~~~~~~~~C~~Cg~C~~~CP~~Ai~ 55 (105)
T 2v2k_A 20 CPVDCIYEG-ARMLYIHPDECVDCGACEPVCPVEAIY 55 (105)
T ss_dssp CTTCCEEEC-SSCEEECTTTCCCCCCSGGGCTTCCEE
T ss_pred cCccccCcC-CCcEEEeCCcCcchhhHHHhCCccCEE
Confidence 344444322 345788899999999999999998764
No 15
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=92.84 E-value=0.03 Score=41.48 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=19.7
Q ss_pred ceeeccccccccccchhhcccchh
Q 011877 51 PVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
++.|+.+.|++||.|+.+|| .++
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP-~~~ 25 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAP-GAF 25 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCT-TTE
T ss_pred EEEEccccCCCchHHHHhCC-ccE
Confidence 46788899999999999999 544
No 16
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=92.67 E-value=0.037 Score=45.14 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.3
Q ss_pred CCceeeccccccccccchhhcccchhh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..++.|+.+.|+.||.|+.+||..++.
T Consensus 35 ~~~~~id~~~C~~Cg~C~~~CP~~ai~ 61 (103)
T 1xer_A 35 GTIVGVDFDLCIADGSCINACPVNVFQ 61 (103)
T ss_dssp CSSEEEETTTCCCCCHHHHHCTTCCCE
T ss_pred CceEEEehhhCCChhhHHHHcCccCee
Confidence 456889999999999999999987654
No 17
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=92.60 E-value=0.043 Score=39.70 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=19.2
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
++.|+.+.|++||.|+.+||.+
T Consensus 2 ~~~i~~~~C~~C~~C~~~Cp~~ 23 (60)
T 1rof_A 2 KVRVDADACIGCGVCENLCPDV 23 (60)
T ss_dssp CSEECTTTCCSCCSSTTTCTTT
T ss_pred EEEEchhhCCCChHHHHhCcHH
Confidence 4578889999999999999974
No 18
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=92.49 E-value=0.042 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.463 Sum_probs=19.4
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.++.+.|++||.|+.+||+.++..
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~ 25 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQ 25 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEE
T ss_pred eEeCCCCcCccchHHHCChhheEc
Confidence 467788999999999999876643
No 19
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=92.47 E-value=0.036 Score=56.46 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCccccccC-CCCceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSKQ-QAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~~-~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|+..++... .++.+.|+.++|+.||.|+.+||+.+|.
T Consensus 220 CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~ 257 (366)
T 3mm5_B 220 CPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLF 257 (366)
T ss_dssp CTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCC
T ss_pred CCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcc
Confidence 555555533 4789999999999999999999998663
No 20
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=92.36 E-value=0.035 Score=57.07 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=23.2
Q ss_pred Cceeeccccccccccchhhcccchhh
Q 011877 50 EPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.+.|+.++|+.||.|+++||+.++.
T Consensus 249 ~~v~id~~~Ci~Cg~C~~~CP~~Ai~ 274 (386)
T 3or1_B 249 KSVAINNDRCMYCGNCYTMCPALPLS 274 (386)
T ss_dssp EEEEECTTTCCCCCHHHHHCTTCCCC
T ss_pred cccccCCCcCCccccHHHhCcHhhCc
Confidence 35999999999999999999997664
No 21
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=92.30 E-value=0.042 Score=43.47 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=20.0
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.++.+.|+.||.|+.+||+.++..
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~ 25 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEAISM 25 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCCEEC
T ss_pred EEeCCcCcChhHHHHHCchhccCc
Confidence 467789999999999999887653
No 22
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=92.23 E-value=0.055 Score=38.86 Aligned_cols=24 Identities=17% Similarity=0.504 Sum_probs=20.0
Q ss_pred eeeccccccccccchhhcccchhhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
+.| .+.|+.||.|+.+||..++..
T Consensus 2 ~~i-~~~C~~C~~C~~~CP~~ai~~ 25 (55)
T 2fdn_A 2 YVI-NEACISCGACEPECPVNAISS 25 (55)
T ss_dssp EEE-CTTCCCCCTTGGGCTTCCEEC
T ss_pred eEe-cccCcChhhHHHHCCccccCc
Confidence 345 889999999999999987643
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.23 E-value=0.039 Score=59.99 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCCCceeeccccccccccchhhcccchhhhccHH
Q 011877 47 QQAEPVKISLKDCLACSGCITSAETVMLEKQSLD 80 (475)
Q Consensus 47 ~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~~~~~ 80 (475)
...+++.|+++.||+||-||..||+.+|+-.++.
T Consensus 43 ~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~nl~ 76 (608)
T 3j16_B 43 PTSKIAFISEILCIGCGICVKKCPFDAIQIINLP 76 (608)
T ss_dssp TTTTEEEECTTTCCCCCHHHHHCSSCCEEEEEES
T ss_pred CCCCceEEehhhccccccccccCCccceEEecCC
Confidence 5678999999999999999999999877655543
No 24
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=92.22 E-value=0.041 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=14.9
Q ss_pred eccccccccccchhhcccchhh
Q 011877 54 ISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++.+.|+.||.|+.+||+.+|.
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~ 24 (80)
T 1rgv_A 3 YINDDCTACDACVEECPNEAIT 24 (80)
T ss_dssp CCCSCCCCCCTTTTTCTTCCEE
T ss_pred EeCCCCcChhhHHHHcChhccC
Confidence 4556777777777777766554
No 25
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=92.19 E-value=0.067 Score=41.95 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCccccccCCCCceeeccccccccc------cchhhcccchhhhc-----cHHHHHHhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLACS------GCITSAETVMLEKQ-----SLDEFLSNI 86 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~Cg------~Cit~c~~~li~~~-----~~~~~~~~l 86 (475)
++..++.. ..+...|+.++|+.|| .|+.+||+.+|... +.+++++.+
T Consensus 18 CP~~ai~~-~~~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~ 75 (82)
T 3eun_A 18 CPNGAISQ-GDETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPSHEETEDELRAKY 75 (82)
T ss_dssp CTTCCEEE-CSSSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGGGCCCHHHHHHHH
T ss_pred CChhheEc-CCCceEEchhhcCCCCCCCCccHHHHhCCccceEEcCCCcCCHHHHHHHH
Confidence 55555543 3456788999999999 89999999866432 245555544
No 26
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=92.18 E-value=0.09 Score=40.88 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=33.3
Q ss_pred CCCCccccccCCCCceeeccccccccc------cchhhcccchhhh-----ccHHHHHHhh
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACS------GCITSAETVMLEK-----QSLDEFLSNI 86 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg------~Cit~c~~~li~~-----~~~~~~~~~l 86 (475)
..++..++... .+...++.+.|+.|| .|+.+||+.+|.. .+.+++++.+
T Consensus 16 ~~CP~~ai~~~-~~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~ 75 (80)
T 1rgv_A 16 EECPNEAITPG-DPIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRETREELQEKY 75 (80)
T ss_dssp TTCTTCCEECC-SSSCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGGGCCCHHHHHHHH
T ss_pred HHcChhccCcC-CCeeEEcchhCcCCCCcCCccHHHHhcCcccEEecCCcccCHHHHHHHH
Confidence 34565555532 345778899999999 9999999986643 2345555543
No 27
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=92.09 E-value=0.043 Score=42.36 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=20.6
Q ss_pred ceeeccccccccccchhhcccchhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+..++.+.|+.||.|+.+||+.++.
T Consensus 2 ~~~~~~~~C~~Cg~C~~~CP~~a~~ 26 (80)
T 1jb0_C 2 HTVKIYDTCIGCTQCVRACPTDVLE 26 (80)
T ss_dssp CEEEEETTCCCCCHHHHHCTTCCCE
T ss_pred CCcccCCcCcChhHHHHHCCccccc
Confidence 3567788999999999999987654
No 28
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=92.03 E-value=0.072 Score=49.38 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCCCCCccccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 35 NPDKPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 35 ~~~~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
....++..++.....+.+.|+.+.|+.||.|+.+||+.++..
T Consensus 66 C~~~CP~gAi~~~~~g~~~id~~~CigC~~C~~~CP~~Ai~~ 107 (195)
T 2vpz_B 66 CVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYL 107 (195)
T ss_dssp TTTTCSSSCEEECTTSCEEECTTTCCCCCHHHHHCTTCCCEE
T ss_pred HHHhcCCCceecccccceeecCCCCCCcChhHhhCCCCCeEE
Confidence 344567667665566788899999999999999999877643
No 29
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=91.92 E-value=0.049 Score=42.64 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=19.5
Q ss_pred eeccccccccccchhhcccchhhh
Q 011877 53 KISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.++.+.|+.||.|+.+||+.+|..
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~ 25 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQ 25 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEE
T ss_pred ceeCCCCCChhhHHHHCChhccCC
Confidence 356788999999999999877653
No 30
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=91.75 E-value=0.055 Score=56.20 Aligned_cols=37 Identities=14% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCCccccccCCCCceeeccccccccccchhhcccchhh
Q 011877 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 38 ~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.|+...+... ++++.|+.+.|+.||.|+.+||+.++.
T Consensus 266 ~CPt~Ai~~~-~~~~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 266 LCPTGAIKWD-GKELTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp GCTTCCEEEC-SSCEEECTTTCCCCCHHHHHCTTTEEC
T ss_pred cCCccccccC-CceeEEChhhcCccChhHHhCcHhhcc
Confidence 3566666643 679999999999999999999997653
No 31
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=91.75 E-value=0.049 Score=42.60 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=19.4
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
++.|+.+.|++||.|+.+||.+
T Consensus 3 ~v~vd~~~CigCg~C~~~CP~~ 24 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAPDI 24 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCTTT
T ss_pred EEEEecccCcccChhhHhCchh
Confidence 4678899999999999999943
No 32
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=91.68 E-value=0.1 Score=40.76 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCccccccCCCCceeeccccccccc------cchhhcccchhhh-----ccHHHHHHhh
Q 011877 38 KPQVSTSSKQQAEPVKISLKDCLACS------GCITSAETVMLEK-----QSLDEFLSNI 86 (475)
Q Consensus 38 ~~~~~~~~~~~~~~a~I~~~dCi~Cg------~Cit~c~~~li~~-----~~~~~~~~~l 86 (475)
.++..++... .+...|+.+.|+.|| .|+.+||+.+|.. .+.+++++.+
T Consensus 17 ~CP~~ai~~~-~~~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~ 75 (82)
T 2fgo_A 17 ECPNGAISQG-EEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANVESKDQLMEKY 75 (82)
T ss_dssp GCTTCCEEEC-SSSEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTTSCCCHHHHHHHH
T ss_pred HCChhccCCC-CCeEEEEchhCccCCCcCCCCHhHhhCCcccEEccCCCccCHHHHHHHH
Confidence 3555555432 345788899999999 9999999976542 2355555543
No 33
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=91.62 E-value=0.078 Score=38.14 Aligned_cols=22 Identities=23% Similarity=0.767 Sum_probs=19.0
Q ss_pred ceeeccccccccccchhhcccc
Q 011877 51 PVKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
++.|+.+.|++||.|+.+||.+
T Consensus 1 ~i~i~~~~C~~C~~C~~~Cp~~ 22 (59)
T 1dwl_A 1 TIVIDHEECIGCESCVELCPEV 22 (59)
T ss_dssp CEEESSCCCSSCCGGGGTSTTT
T ss_pred CeEEChhhCcChhHHHHHCCHH
Confidence 3578889999999999999963
No 34
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=90.92 E-value=0.072 Score=52.60 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=29.3
Q ss_pred CCc-cccccCCCCceeeccccccccccchhhcccchhhh
Q 011877 39 PQV-STSSKQQAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 39 ~~~-~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
|+. .++.....+.+.|+.+.|+.||.|+.+||+.++..
T Consensus 112 CP~~gAi~~~~~g~v~id~~~CigCg~C~~~CP~~ai~~ 150 (294)
T 1kqf_B 112 CPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRL 150 (294)
T ss_dssp CCSTTSEEEETTSCEEECGGGCCCCCHHHHHCTTCCCEE
T ss_pred CCccCccccccccceEeCcccCCCcchhhhcCCCCCcEe
Confidence 444 55554567788999999999999999999876653
No 35
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=90.87 E-value=0.042 Score=48.83 Aligned_cols=40 Identities=8% Similarity=0.195 Sum_probs=28.0
Q ss_pred CCccccccCCCC-c-eeeccccccccccchhhcccchhhhcc
Q 011877 39 PQVSTSSKQQAE-P-VKISLKDCLACSGCITSAETVMLEKQS 78 (475)
Q Consensus 39 ~~~~~~~~~~~~-~-a~I~~~dCi~Cg~Cit~c~~~li~~~~ 78 (475)
|+..++.....+ + ..|+.+.|+.||.|+.+||+.+|....
T Consensus 25 CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (150)
T 1jnr_B 25 CPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRG 66 (150)
T ss_dssp CTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECC
T ss_pred cCccCeEEecCCceeeeeCcccCcCHhHHHHhCCccceEecC
Confidence 454454433222 3 467889999999999999998776544
No 36
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=90.53 E-value=0.077 Score=39.10 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=18.7
Q ss_pred ceeeccccccccccchhhccc
Q 011877 51 PVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
++.|+.+.|++||.|+.+||.
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~ 23 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPD 23 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTT
T ss_pred EEEECcccCcCchHHHHhCCc
Confidence 467888999999999999996
No 37
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=90.53 E-value=0.12 Score=37.10 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=21.6
Q ss_pred CCcee--eccccccccccchhhcccchhh
Q 011877 49 AEPVK--ISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 49 ~~~a~--I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
.+++. ++.+.|..||.|+.+||+.+|.
T Consensus 29 ~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~ 57 (59)
T 1dwl_A 29 EEKAMVTAPDSTAECAQDAIDACPVEAIS 57 (59)
T ss_dssp SSCEEESCTTCCCGGGGTGGGGSTTCCEE
T ss_pred CCcEEEecChhhhhHHHHHHHhCCHhhEE
Confidence 34444 4788999999999999998764
No 38
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=90.42 E-value=0.072 Score=48.14 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCccccccCCCC--ceeeccccccccccchhhcccchhhhc
Q 011877 39 PQVSTSSKQQAE--PVKISLKDCLACSGCITSAETVMLEKQ 77 (475)
Q Consensus 39 ~~~~~~~~~~~~--~a~I~~~dCi~Cg~Cit~c~~~li~~~ 77 (475)
|+..++.....+ .+.++.++|+.||.|+.+||+.+|...
T Consensus 24 CP~~ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 64 (166)
T 3gyx_B 24 CPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAITAR 64 (166)
T ss_dssp CTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCSSCCEEEC
T ss_pred CCccccEEecCCceeEecCcccCcccChHhHhCCccceEEe
Confidence 455555433322 345778899999999999999877654
No 39
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=90.37 E-value=0.074 Score=47.81 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.1
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...++..+|+.||.|+.+||+.+|..
T Consensus 90 ~~~~~~~~C~~C~~C~~~CP~~Ai~~ 115 (182)
T 3i9v_9 90 VYEINMLRCIFCGLCEEACPTGAIVL 115 (182)
T ss_dssp EEEEETTTCCCCCHHHHHCSSSCEEE
T ss_pred eeecCCCcCcChhChhhhCCccceEe
Confidence 45778899999999999999987653
No 40
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=90.35 E-value=0.059 Score=43.91 Aligned_cols=24 Identities=13% Similarity=0.563 Sum_probs=20.9
Q ss_pred eeeccccccccccchhhcccchhh
Q 011877 52 VKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
..++.+.|+.||.|+.+||+.+|.
T Consensus 76 ~~~~~~~C~~Cg~C~~~CP~~Ai~ 99 (103)
T 1xer_A 76 DPVNEQACIFCMACVNVCPVAAID 99 (103)
T ss_dssp ECTTGGGCCCCCHHHHHCTTCCEE
T ss_pred eecCcccccChhhHHHhccccceE
Confidence 457788999999999999998764
No 41
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=90.04 E-value=0.083 Score=55.08 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCccccccCCCCceeeccccccccccchhhcccchh
Q 011877 38 KPQVSTSSKQQAEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 38 ~~~~~~~~~~~~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
.|+...+.. .++++.|+.++|+.||.|+++||+.+.
T Consensus 283 ~CPt~ai~~-~~~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 283 LCPTGCMTY-ESGTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp TCTTCCEEE-ETTEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred cCcHHheee-cCCEEEEccccCCchhhhHhhCcHhhc
Confidence 366666664 357899999999999999999998764
No 42
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=89.94 E-value=0.1 Score=37.59 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=21.5
Q ss_pred CCceeec--cccccccccchhhcccchhhh
Q 011877 49 AEPVKIS--LKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 49 ~~~a~I~--~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+++.+. .+.|+.||.|+.+||+.+|..
T Consensus 29 ~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~ 58 (60)
T 1rof_A 29 DGKAKVLQPETDLPCAKDAADSCPTGAISV 58 (60)
T ss_dssp SSCCCBSCSSCCSTTHHHHHHHCTTCCEEC
T ss_pred CCCEeecCchhhHHHHHHHHHhCCHhHEEE
Confidence 3444444 688999999999999987653
No 43
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=89.81 E-value=0.11 Score=52.69 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=15.3
Q ss_pred CCceeeccccccccccchhhcccchh
Q 011877 49 AEPVKISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~~li 74 (475)
.+.+.|+.++|+.||.|+.+||+.++
T Consensus 174 ~g~v~id~~kCigCg~Cv~aCP~~Ai 199 (352)
T 2ivf_B 174 NGIVLVDQERCKGHRHCVEACPYKAI 199 (352)
T ss_dssp TCCEEECTTTCCCCCHHHHHCTTCCE
T ss_pred CCeEEechhhcCCchHHHhhcCccce
Confidence 44555566666666666666665544
No 44
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=89.67 E-value=0.21 Score=39.25 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred CCCCccccccCCCCceeeccccccccc------cchhhccc-chhh
Q 011877 37 DKPQVSTSSKQQAEPVKISLKDCLACS------GCITSAET-VMLE 75 (475)
Q Consensus 37 ~~~~~~~~~~~~~~~a~I~~~dCi~Cg------~Cit~c~~-~li~ 75 (475)
..++..++... .+...++.+.|+.|| .|+.+||+ .+|.
T Consensus 16 ~~CP~~ai~~~-~~~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~ 60 (85)
T 2zvs_A 16 PECPNEAISMG-DHIYEINSDKCTECVGHYETPTCQKVCPIPNTIV 60 (85)
T ss_dssp TTCTTCCEECC-SSSCEECGGGCCTTTTTCSSCHHHHHCSSCCEEE
T ss_pred HHCchhccCcC-CCceEEeChhccCCCCcCCccHhhHhCcCCCCEE
Confidence 34665555532 345778999999999 99999999 7654
No 45
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=89.43 E-value=0.076 Score=39.25 Aligned_cols=21 Identities=0% Similarity=-0.129 Sum_probs=18.4
Q ss_pred cccccccccchhhcccchhhh
Q 011877 56 LKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+.|+.||.|+.+||+.+|..
T Consensus 41 ~~~C~~C~~C~~~CP~~Ai~~ 61 (64)
T 1dax_A 41 GASQEEVEEAMDTCPVQCIHW 61 (64)
T ss_dssp GSCHHHHHHHHHHSSSCCEEC
T ss_pred CcchhHHHHHHHhCCHhhEee
Confidence 688999999999999987653
No 46
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=89.23 E-value=0.088 Score=40.52 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.0
Q ss_pred eccccccccccchhhcccchhh
Q 011877 54 ISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
++.+.|+.||.|+.+||+.+|.
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ai~ 63 (80)
T 1jb0_C 42 PRTEDCVGCKRCETACPTDFLS 63 (80)
T ss_dssp TTGGGCCCCCHHHHHCCSSSCS
T ss_pred CCCCcCcCcCChhhhCCCCccE
Confidence 4568899999999999998764
No 47
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=89.23 E-value=0.12 Score=37.20 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=20.4
Q ss_pred eeec--cccccccccchhhcccchhh
Q 011877 52 VKIS--LKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 52 a~I~--~~dCi~Cg~Cit~c~~~li~ 75 (475)
..++ .+.|+.||.|+.+||+.+|.
T Consensus 31 ~~~~~~~~~C~~C~~C~~~CP~~Ai~ 56 (58)
T 1f2g_A 31 AVVINPDSDLDCVEEAIDSCPAEAIV 56 (58)
T ss_dssp EEESCTTCCSTHHHHHHHTCSSCCCB
T ss_pred EEeCCCccchHHHHHHHhhCChhhEE
Confidence 5566 78999999999999998764
No 48
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=88.39 E-value=0.15 Score=39.24 Aligned_cols=25 Identities=8% Similarity=0.344 Sum_probs=21.0
Q ss_pred eeeccccccc--cccchhhcccchhhh
Q 011877 52 VKISLKDCLA--CSGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~--Cg~Cit~c~~~li~~ 76 (475)
+.|+.+.|++ ||.|+.+||+.+|..
T Consensus 1 a~i~~~~C~~c~C~~C~~~Cp~~ai~~ 27 (77)
T 1bc6_A 1 AYVITEPCIGTKDASCVEVCPVDCIHE 27 (77)
T ss_dssp CEECCSTTTTCCCCSSTTTCTTCCEEE
T ss_pred CEEeCccCCCCCcchhHHhcccccEEe
Confidence 3577899999 999999999987653
No 49
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=86.67 E-value=0.16 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=17.9
Q ss_pred ccccccccccchhhcccchhh
Q 011877 55 SLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~ 75 (475)
+.++|+.||.|+.+||+.++.
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~ 69 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIY 69 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEE
T ss_pred CCccCcccccchhhCCcccEE
Confidence 457899999999999997653
No 50
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=86.57 E-value=0.17 Score=41.56 Aligned_cols=24 Identities=13% Similarity=0.501 Sum_probs=20.5
Q ss_pred eeccccccccc--cchhhcccchhhh
Q 011877 53 KISLKDCLACS--GCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~Cg--~Cit~c~~~li~~ 76 (475)
.|+.+.|+.|| .|+.+||+.++..
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~ 27 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYE 27 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEE
T ss_pred eECccccCCccCcHHHHHcCccceEc
Confidence 46789999999 9999999987643
No 51
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=85.84 E-value=0.21 Score=38.62 Aligned_cols=24 Identities=8% Similarity=0.340 Sum_probs=20.4
Q ss_pred eeccccccc--cccchhhcccchhhh
Q 011877 53 KISLKDCLA--CSGCITSAETVMLEK 76 (475)
Q Consensus 53 ~I~~~dCi~--Cg~Cit~c~~~li~~ 76 (475)
.|+.+.|++ ||.|+.+||+.+|..
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~ 27 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYD 27 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEE
T ss_pred EEEchhCCCCCcChhhhhcCccceEc
Confidence 467889999 999999999987654
No 52
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=85.59 E-value=0.23 Score=44.76 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=22.2
Q ss_pred ceeeccccccccc-----cchhhcccchhhh
Q 011877 51 PVKISLKDCLACS-----GCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg-----~Cit~c~~~li~~ 76 (475)
++.|+.+.|++|| .|+.+||..++..
T Consensus 1 pv~id~~~C~gC~~c~~~~C~~~CP~~ai~~ 31 (166)
T 3gyx_B 1 PTYVDPSKCDGCKGGEKTACMYICPNDLMIL 31 (166)
T ss_dssp CEEECTTTCCCCCSSSCCHHHHHCTTSCEEE
T ss_pred CCEEcchhcCCCCCCCcchhHHhCCccccEE
Confidence 3678999999999 9999999987643
No 53
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=85.13 E-value=0.25 Score=53.14 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCcccccc-C-CCC---ceeeccccccccccchhhcccchhh
Q 011877 39 PQVSTSSK-Q-QAE---PVKISLKDCLACSGCITSAETVMLE 75 (475)
Q Consensus 39 ~~~~~~~~-~-~~~---~a~I~~~dCi~Cg~Cit~c~~~li~ 75 (475)
|+...++. . .++ ++.|+.+.||.||.|...||+..|+
T Consensus 528 CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~ 569 (584)
T 2gmh_A 528 CPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNIN 569 (584)
T ss_dssp CTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEE
T ss_pred CChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCce
Confidence 56555543 2 345 7999999999999999999998763
No 54
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=84.72 E-value=0.28 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.1
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+.++.+.|+.||.|+.+||..+|..
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~ 52 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFG 52 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBC
T ss_pred eEEECcccCCCccHHHHhcCcCceec
Confidence 68899999999999999999987653
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.21 E-value=0.31 Score=52.90 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCCceeeccccccccccchhhcccchhhh
Q 011877 48 QAEPVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
..+++.|+++-|++||-|+..||+.+|+-
T Consensus 58 ~~~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 58 ENYKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp TTTEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred CCCcceeeecccCccccccCCCCcceEEE
Confidence 45899999999999999999999876554
No 56
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=83.81 E-value=0.28 Score=40.05 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=20.9
Q ss_pred eeecccccccc--ccchhhcccchhhh
Q 011877 52 VKISLKDCLAC--SGCITSAETVMLEK 76 (475)
Q Consensus 52 a~I~~~dCi~C--g~Cit~c~~~li~~ 76 (475)
+.|+.+.|++| |.|+.+||+.+|..
T Consensus 1 ~~i~~~~C~~C~c~~C~~~CP~~ai~~ 27 (105)
T 2v2k_A 1 TYVIAEPCVDVKDKACIEECPVDCIYE 27 (105)
T ss_dssp CEEECGGGTTTCCCHHHHHCTTCCEEE
T ss_pred CEEecccCCCCCcChhhhhcCccccCc
Confidence 45788999988 99999999987653
No 57
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=83.23 E-value=0.35 Score=42.79 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=21.7
Q ss_pred ceeeccccccccc-----cchhhcccchhh
Q 011877 51 PVKISLKDCLACS-----GCITSAETVMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg-----~Cit~c~~~li~ 75 (475)
++.|+.+.|+.|| .|+.+||+.+|.
T Consensus 2 ~~~vd~~~C~~C~~~~~~~C~~~CP~~ai~ 31 (150)
T 1jnr_B 2 PSFVNPEKCDGCKALERTACEYICPNDLMT 31 (150)
T ss_dssp CEEECTTTCCSCCSSSSCHHHHHCTTSCEE
T ss_pred ceEECcccCCCCCCcccccchhhcCccCeE
Confidence 3568899999999 999999998764
No 58
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=81.94 E-value=0.49 Score=44.69 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=20.5
Q ss_pred ccccccccccchhhcccchhhhccHHHH
Q 011877 55 SLKDCLACSGCITSAETVMLEKQSLDEF 82 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~~~~~~~ 82 (475)
....|+.||.|+.+||+++...+.+.++
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~~~~~i~~l 229 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLNPTRAIGHI 229 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCCHHHHHHHH
T ss_pred CCCcCcccchhhhhcCCCCCHHHHHHHH
Confidence 5678999999999999985433333333
No 59
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=81.49 E-value=0.33 Score=45.48 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=28.4
Q ss_pred ccccccCC-CCceeecccccc--ccccchhhcccchhhh
Q 011877 41 VSTSSKQQ-AEPVKISLKDCL--ACSGCITSAETVMLEK 76 (475)
Q Consensus 41 ~~~~~~~~-~~~a~I~~~dCi--~Cg~Cit~c~~~li~~ 76 (475)
..++.... .+.+.|+.+.|+ .||.|+.+||+.++..
T Consensus 89 ~gAi~~~~~~g~v~id~~~C~~~~C~~C~~~CP~~Ai~~ 127 (214)
T 1h0h_B 89 ESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRK 127 (214)
T ss_dssp TTSEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEE
T ss_pred cccEEecCCCCeEEEeHHHCccccccHHHHhcCCCCeEe
Confidence 44544333 678999999999 9999999999987754
No 60
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=81.33 E-value=0.34 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=21.6
Q ss_pred ceeeccccccccccchhhccc--chhh
Q 011877 51 PVKISLKDCLACSGCITSAET--VMLE 75 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~--~li~ 75 (475)
...|+.++|+.||.|+.+||+ .+|.
T Consensus 736 ~~~v~~~~C~gCG~Cv~vCP~~~~AI~ 762 (1231)
T 2c42_A 736 RIQINTLDCMGCGNCADICPPKEKALV 762 (1231)
T ss_dssp EEEECTTTCCCCCHHHHHCSSSSCSEE
T ss_pred ceeechhhCCChhHHHhhCCCCccCeE
Confidence 357889999999999999999 6654
No 61
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=81.26 E-value=0.21 Score=38.85 Aligned_cols=23 Identities=4% Similarity=-0.169 Sum_probs=19.1
Q ss_pred eccccccccccchhhcccchhhh
Q 011877 54 ISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
+..+.|..||.|+.+||+.+|..
T Consensus 46 ~~~~~c~~C~~C~~~CP~~AI~~ 68 (81)
T 1iqz_A 46 VPDILIDDMMDAFEGCPTDSIKV 68 (81)
T ss_dssp CCGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHHhCCHhHEEE
Confidence 34578999999999999987753
No 62
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=80.01 E-value=0.61 Score=44.18 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.8
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
...+|+.||.|+.+||+++
T Consensus 200 ~~~~C~~Cg~C~~vCP~gi 218 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKHV 218 (243)
T ss_dssp TGGGCCCCCHHHHHCTTCC
T ss_pred CcccCcccCCcchhCCCCC
Confidence 4678999999999999974
No 63
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=76.20 E-value=0.72 Score=54.08 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=21.9
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
...++.+.|+.||.|+.+||+.+|..
T Consensus 680 ~p~~d~~kCi~Cg~Cv~vCP~~AI~~ 705 (1231)
T 2c42_A 680 VPQWVPENCIQCNQCAFVCPHSAILP 705 (1231)
T ss_dssp EEEECTTTCCCCCHHHHHCSSCCEEE
T ss_pred ceEEeCccCCchhhHHHhCCcccccc
Confidence 35678899999999999999987653
No 64
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=74.60 E-value=1 Score=50.22 Aligned_cols=21 Identities=5% Similarity=-0.192 Sum_probs=17.5
Q ss_pred cccccccchhhcccchhhhcc
Q 011877 58 DCLACSGCITSAETVMLEKQS 78 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~~~ 78 (475)
+|+.||.|+.+||+++|+...
T Consensus 219 ~C~~CG~Cv~vCP~gAl~~~~ 239 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALLDLT 239 (783)
T ss_dssp CSTTTTTHHHHCSSSSEEEGG
T ss_pred CCccchhHHhhcccCceeccc
Confidence 699999999999998876543
No 65
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=74.32 E-value=0.84 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=18.0
Q ss_pred eccccccccccchhhcccchh
Q 011877 54 ISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li 74 (475)
...+.|+.||.|+.+||...+
T Consensus 144 ~~~~~Ci~Cg~C~~~CP~~~~ 164 (238)
T 2wdq_B 144 DGLYECILCACCSTSCPSFWW 164 (238)
T ss_dssp TTTTTCCCCCTTGGGCHHHHH
T ss_pred hccccccccCCchhhCcCCcc
Confidence 457889999999999998754
No 66
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=73.97 E-value=0.68 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=18.6
Q ss_pred eccccccccccchhhcccchh
Q 011877 54 ISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li 74 (475)
.+.+.|+.||.|+.+||...+
T Consensus 143 ~~~~~Ci~Cg~C~~~CP~~~~ 163 (243)
T 1kf6_B 143 HQFSGCINCGLCYAACPQFGL 163 (243)
T ss_dssp GGGGCCCCCCHHHHHCHHHHH
T ss_pred hhhhhccccCccccccCCCcc
Confidence 678899999999999998754
No 67
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=70.78 E-value=1.1 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.693 Sum_probs=20.7
Q ss_pred CCceeeccccccccccchhhccc
Q 011877 49 AEPVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 49 ~~~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
...+.++.++|+.||.|+.+||.
T Consensus 137 ~~~i~~d~~kCi~Cg~Cv~~CP~ 159 (574)
T 3c8y_A 137 SKSLTVDRTKCLLCGRCVNACGK 159 (574)
T ss_dssp SSSEEEEGGGCCCCCHHHHHHHH
T ss_pred CCcceeCcccCcCCCCccchhCc
Confidence 44688999999999999999997
No 68
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=70.49 E-value=0.76 Score=43.52 Aligned_cols=21 Identities=29% Similarity=0.835 Sum_probs=17.9
Q ss_pred eccccccccccchhhcccchh
Q 011877 54 ISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li 74 (475)
...+.|+.||.|+.+||+..+
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~ 166 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIM 166 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHH
T ss_pred hhhhhhhccCcCcccCCCCcc
Confidence 356789999999999998754
No 69
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=69.50 E-value=1 Score=43.60 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=18.5
Q ss_pred ceeeccccccccccchhhcccchhhh
Q 011877 51 PVKISLKDCLACSGCITSAETVMLEK 76 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~~li~~ 76 (475)
.+.++..+|+.||.|+.+|| .++..
T Consensus 195 ~v~~d~~~C~~C~~C~~vCp-~aI~~ 219 (265)
T 2pa8_D 195 LSVKNELSCTLCEECLRYCN-GSIRI 219 (265)
T ss_dssp EEESCGGGCCCCCHHHHHHT-TSEEE
T ss_pred eEEeccccCCCchHHHHhCC-CceEE
Confidence 34455678999999999999 65543
No 70
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=68.40 E-value=1.7 Score=49.86 Aligned_cols=23 Identities=13% Similarity=0.527 Sum_probs=12.6
Q ss_pred eeeccccccccccchhhccc-chhh
Q 011877 52 VKISLKDCLACSGCITSAET-VMLE 75 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~-~li~ 75 (475)
..++ ++|+.||.|+.+||+ .+|.
T Consensus 980 ~~~~-~~C~~Cg~C~~~CP~~~Ai~ 1003 (1025)
T 1gte_A 980 PTVT-DTCTGCTLCLSVCPIIDCIR 1003 (1025)
T ss_dssp EEEC-TTCCCCCHHHHHCSSTTTEE
T ss_pred EEeC-ccCCChhHHHhhCCCCCCEE
Confidence 3444 556666666666665 4443
No 71
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=67.85 E-value=1.4 Score=41.99 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=17.8
Q ss_pred eccccccccccchhhcccchh
Q 011877 54 ISLKDCLACSGCITSAETVML 74 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li 74 (475)
...+.|+.||.|+.+||...+
T Consensus 153 ~~~~~Ci~CG~C~~~CP~~~~ 173 (252)
T 2h88_B 153 DGLYECILCACCSTSCPSYWW 173 (252)
T ss_dssp TTTTTCCCCCTTGGGCHHHHH
T ss_pred HhHHhchhhCcchhhCCCCcc
Confidence 456789999999999998753
No 72
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=67.77 E-value=1 Score=32.73 Aligned_cols=19 Identities=0% Similarity=-0.073 Sum_probs=16.1
Q ss_pred cccccccchhhcccchhhh
Q 011877 58 DCLACSGCITSAETVMLEK 76 (475)
Q Consensus 58 dCi~Cg~Cit~c~~~li~~ 76 (475)
.|..||.|+.+||+.+|..
T Consensus 45 ~c~~c~~C~~~CP~~Ai~~ 63 (66)
T 1sj1_A 45 LYNCAKEAMEACPVSAITI 63 (66)
T ss_dssp HHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhhCCHhhEEE
Confidence 4789999999999987653
No 73
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=67.40 E-value=2 Score=40.98 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=21.1
Q ss_pred ccccccccccchhhcccchhhhccHHHHHHh
Q 011877 55 SLKDCLACSGCITSAETVMLEKQSLDEFLSN 85 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~ 85 (475)
....|+.||.|+.+||..+--...+..+.+.
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i~~~~~i~~lr~~ 241 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 241 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CCCcCccccchhhhcCCCCCHHHHHHHHHHH
Confidence 3578999999999999974323333444433
No 74
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=66.85 E-value=2 Score=40.49 Aligned_cols=31 Identities=6% Similarity=0.132 Sum_probs=21.4
Q ss_pred eccccccccccchhhcccchhhhccHHHHHH
Q 011877 54 ISLKDCLACSGCITSAETVMLEKQSLDEFLS 84 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~ 84 (475)
.....|+.||.|..+||..+--.+.+.++.+
T Consensus 203 ~~~~~C~~Cg~C~~vCP~~i~~~~~i~~lr~ 233 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPKNLPLQSKIAYLRR 233 (241)
T ss_dssp TTGGGCCCCCHHHHHCTTCCCHHHHHHHHHH
T ss_pred cCcccCcccChhhHhcCCCCChHHHHHHHHH
Confidence 3567899999999999997432323444443
No 75
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=65.96 E-value=1.4 Score=49.34 Aligned_cols=37 Identities=8% Similarity=0.225 Sum_probs=26.0
Q ss_pred eeccccccccccchhhcccchhhhccHHHHHHhhcCC
Q 011877 53 KISLKDCLACSGCITSAETVMLEKQSLDEFLSNINKG 89 (475)
Q Consensus 53 ~I~~~dCi~Cg~Cit~c~~~li~~~~~~~~~~~l~~~ 89 (475)
....+.|+.||+|+.+||+.+...+.+.++.+.+...
T Consensus 449 ~~~~~~Ci~Cg~C~~vCP~ga~~~~~i~~~r~~l~~~ 485 (807)
T 3cf4_A 449 EEIHDTCIGCRRCEQVCKKEIPILNVIEKIAQKQIAE 485 (807)
T ss_dssp HHHHHHCCCCCHHHHHCTTCCCHHHHHHHHTHHHHHT
T ss_pred hhchhhccchhhHHHhCCCCCChHHHHHHHHHHHHhc
Confidence 3456789999999999998765555566666666443
No 76
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=64.57 E-value=1.6 Score=40.12 Aligned_cols=21 Identities=24% Similarity=0.694 Sum_probs=19.2
Q ss_pred eeeccccccccccchhhcccc
Q 011877 52 VKISLKDCLACSGCITSAETV 72 (475)
Q Consensus 52 a~I~~~dCi~Cg~Cit~c~~~ 72 (475)
..|+.+.|++|+.|+.+|+..
T Consensus 6 ~~iD~~~CigC~~C~~aC~~~ 26 (195)
T 2vpz_B 6 MAIDLSLCVGCAACAVACKME 26 (195)
T ss_dssp EEEETTTCCCCCHHHHHHHHH
T ss_pred EEeeHHHCcChhHHHHHhhHh
Confidence 678999999999999999975
No 77
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=64.29 E-value=1.7 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.592 Sum_probs=18.2
Q ss_pred ceeeccccccccccchhhccc
Q 011877 51 PVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 51 ~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
.+.++.++||.||.|+.+||.
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~ 193 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEE 193 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHH
T ss_pred cEEEchhhCCCccHHHHHhhh
Confidence 467788999999999999954
No 78
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=63.59 E-value=1.6 Score=50.04 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCCceeeccccccccccchhhccc
Q 011877 48 QAEPVKISLKDCLACSGCITSAET 71 (475)
Q Consensus 48 ~~~~a~I~~~dCi~Cg~Cit~c~~ 71 (475)
....+.|+.+.|+.||.|+.+||.
T Consensus 942 ~~~~~~id~~~C~~Cg~C~~~CP~ 965 (1025)
T 1gte_A 942 EQVVAVIDEEMCINCGKCYMTCND 965 (1025)
T ss_dssp SCEEEEECTTTCCCCCHHHHHHHH
T ss_pred ccceEEEEcccCcccCHHHHhcCc
Confidence 445678999999999999999996
No 79
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=62.45 E-value=6.3 Score=30.58 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEec
Q 011877 79 LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 134 (475)
Q Consensus 79 ~~~~~~~l~~~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~Dt 134 (475)
+.+|++.|+..|. +.+- -||++||++..++..+|..+...=...-|+|-
T Consensus 9 l~~Fi~yIk~~Kv--v~Le-----dLA~~F~l~t~~~i~RI~~Le~~g~ltGViDD 57 (72)
T 1wi9_A 9 LTEFINYIKKSKV--VLLE-----DLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD 57 (72)
T ss_dssp HHHHHHHHHHCSE--ECHH-----HHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred HHHHHHHHHHcCe--eeHH-----HHHHHhCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 5689999998764 4343 49999999999988888888877777777774
No 80
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=59.81 E-value=4 Score=38.00 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=22.5
Q ss_pred cccccccc------c---cchhhcccchhhhccHHHHH
Q 011877 55 SLKDCLAC------S---GCITSAETVMLEKQSLDEFL 83 (475)
Q Consensus 55 ~~~dCi~C------g---~Cit~c~~~li~~~~~~~~~ 83 (475)
..+.|..| | .|+.+||+.+|...+.+++.
T Consensus 133 ~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~ 170 (214)
T 1h0h_B 133 QMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEME 170 (214)
T ss_dssp CEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHH
T ss_pred ccCcCCCCcchhhcCCChhHHHhcCcccEEEccHHHHH
Confidence 46789999 5 89999999887665555543
No 81
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=52.97 E-value=3.2 Score=40.56 Aligned_cols=18 Identities=28% Similarity=0.744 Sum_probs=15.7
Q ss_pred cccccccccchhhcccch
Q 011877 56 LKDCLACSGCITSAETVM 73 (475)
Q Consensus 56 ~~dCi~Cg~Cit~c~~~l 73 (475)
...||.||-|..+||...
T Consensus 179 ~~~CI~CG~C~~aCP~~~ 196 (282)
T 3vr8_B 179 LYECILCACCSASCPSYW 196 (282)
T ss_pred hhhCcccCcCcccCCcee
Confidence 467999999999999874
No 82
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=46.84 E-value=4.1 Score=39.56 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCccccccCCCCceeecccccccc----------c---cchhhcccchhhhccHH--HHHHhh
Q 011877 39 PQVSTSSKQQAEPVKISLKDCLAC----------S---GCITSAETVMLEKQSLD--EFLSNI 86 (475)
Q Consensus 39 ~~~~~~~~~~~~~a~I~~~dCi~C----------g---~Cit~c~~~li~~~~~~--~~~~~l 86 (475)
|+..++..... ....++|..| | .|+.+||+.+|.-.+.. ++.+.+
T Consensus 109 CP~~Ai~~~~~---~~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~dp~v~~~~ 168 (274)
T 1ti6_B 109 CPYGVMYWNEE---ENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPEAMAKKV 168 (274)
T ss_dssp CSSCCCEEETT---TTEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEECHHHHHHHH
T ss_pred CccCCeEEEcc---cCccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCCcHHHHHHH
Confidence 55555543222 2356889999 9 99999999877644433 555544
No 83
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=44.97 E-value=7.6 Score=37.92 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.8
Q ss_pred ccccccccccchhhcccch
Q 011877 55 SLKDCLACSGCITSAETVM 73 (475)
Q Consensus 55 ~~~dCi~Cg~Cit~c~~~l 73 (475)
....|..||.|..+||.++
T Consensus 235 ~l~~C~~Cg~C~~vCP~gI 253 (282)
T 3vr8_B 235 SAFKCHTIMNCTKTCPKHL 253 (282)
T ss_pred CcccChhhCCccccCcCCC
Confidence 4678999999999999874
No 84
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=40.76 E-value=7.9 Score=43.31 Aligned_cols=20 Identities=15% Similarity=0.579 Sum_probs=17.3
Q ss_pred eccccccccccchhhcccch
Q 011877 54 ISLKDCLACSGCITSAETVM 73 (475)
Q Consensus 54 I~~~dCi~Cg~Cit~c~~~l 73 (475)
...+.|+.||.|+.+||+.+
T Consensus 412 ~~~~~Ci~CG~C~~~CP~~~ 431 (807)
T 3cf4_A 412 NMVAKCADCGACLLACPEEI 431 (807)
T ss_dssp HHHHHCCCCCHHHHHCTTCC
T ss_pred HhHHhCCCCCchhhhCCCCC
Confidence 35678999999999999974
No 85
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=33.21 E-value=12 Score=39.61 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=22.5
Q ss_pred Cceeeccccccccc--cchhhcccchhhh
Q 011877 50 EPVKISLKDCLACS--GCITSAETVMLEK 76 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg--~Cit~c~~~li~~ 76 (475)
....+..+.|+.|+ .|+.+||+.+|..
T Consensus 175 ~~i~~~~~~C~~C~~~~Cv~aCP~gAI~~ 203 (512)
T 1q16_B 175 TFMMYLPRLCEHCLNPACVATCPSGAIYK 203 (512)
T ss_dssp CCCEEEEECCCCCSSCHHHHTCTTCCEEE
T ss_pred ceEEecCccCcCCCCchhhhhCCcCcEEe
Confidence 45678889999999 5999999987654
No 86
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=33.19 E-value=13 Score=38.34 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.2
Q ss_pred Cceeecccccccccc--chhhcccc
Q 011877 50 EPVKISLKDCLACSG--CITSAETV 72 (475)
Q Consensus 50 ~~a~I~~~dCi~Cg~--Cit~c~~~ 72 (475)
..+.-.-++|+.|+- |...||..
T Consensus 13 ~~~~~~a~rc~~c~~~~C~~~CP~~ 37 (456)
T 2vdc_G 13 ERANEQANRCSQCGVPFCQVHCPVS 37 (456)
T ss_dssp TTHHHHHHHSCCCSSCHHHHTSTTC
T ss_pred HHHHHHHHhhhcCCCchhhcCCCCC
Confidence 456667889999997 99999985
No 87
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=22.84 E-value=22 Score=22.15 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=6.8
Q ss_pred CCcccccCC
Q 011877 391 ACPSGCLNG 399 (475)
Q Consensus 391 ACpgGCinG 399 (475)
.||.||-+-
T Consensus 7 tcpsgcsgd 15 (31)
T 2hm3_A 7 TCPSGCSGD 15 (31)
T ss_dssp CCCTTCCGG
T ss_pred cCCCCcCcc
Confidence 499999753
No 88
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.22 E-value=1.1e+02 Score=30.25 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=39.0
Q ss_pred hcCCCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEechhhhh-----hhHHHHHHHHHHHHh
Q 011877 86 INKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRD-----LTLIEACNEFIARYK 154 (475)
Q Consensus 86 l~~~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~Dts~gad-----i~~~e~~~E~~~r~~ 154 (475)
|+.+.+ |++|||++.+. .+ .. ....+-+..|+++||+-++.-...+. =+-.+-++++.+-+.
T Consensus 9 L~~GD~-I~ivaPS~~~~---~~--~~-~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~ 75 (331)
T 4e5s_A 9 LKKGDE-IRVISPSCSLS---IV--ST-ENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFR 75 (331)
T ss_dssp CCTTCE-EEEECSSSCGG---GS--CH-HHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHH
T ss_pred CCCcCE-EEEEeCCCCcc---cc--CH-HHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhh
Confidence 555554 89999985333 11 12 23456677899999998876544322 134566778887775
No 89
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.15 E-value=2.2e+02 Score=23.16 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=43.6
Q ss_pred cccchhhcccchh--hhc-cHHHHHHhhc---CCCeEEEEeCcchhhhhhhhcCCChHhHHHHHHHHHHHcCCcEEEe--
Q 011877 62 CSGCITSAETVML--EKQ-SLDEFLSNIN---KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFD-- 133 (475)
Q Consensus 62 Cg~Cit~c~~~li--~~~-~~~~~~~~l~---~~k~vV~~iaP~~r~sl~~~fg~~~~~~~~kl~~~Lk~lGf~~V~D-- 133 (475)
....+-.+|+-.- ... ....+++.|. ++|++ +.++- +|...+.....|...|+++|+..|-+
T Consensus 46 ~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~-~~f~t---------~g~~~~~a~~~l~~~l~~~G~~~v~~~~ 115 (138)
T 5nul_A 46 EDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKV-ALFGS---------YGWGDGKWMRDFEERMNGYGCVVVETPL 115 (138)
T ss_dssp CSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEE-EEEEE---------ESSSCSHHHHHHHHHHHHTTCEECSCCE
T ss_pred CCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEE-EEEEe---------cCCCCChHHHHHHHHHHHCCCEEECCce
Confidence 3344555666321 122 4677777765 34543 33332 33333455689999999999987632
Q ss_pred -chhhhhhhHHHHHHHHHHHH
Q 011877 134 -TSCSRDLTLIEACNEFIARY 153 (475)
Q Consensus 134 -ts~gadi~~~e~~~E~~~r~ 153 (475)
+...-|-.- +.++||-+++
T Consensus 116 ~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 116 IVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp EEESSCGGGH-HHHHHHHHHH
T ss_pred EEecCCCHHH-HHHHHHHHHH
Confidence 222223233 5556666544
Done!