Query 011878
Match_columns 475
No_of_seqs 139 out of 1485
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jey_B KU80; double-strand DNA 100.0 2.7E-79 9.1E-84 650.1 48.8 454 1-474 1-500 (565)
2 1jey_A KU70; double-strand DNA 100.0 3.6E-78 1.2E-82 645.2 42.2 433 3-474 33-496 (609)
3 4b4t_W RPN10, 26S proteasome r 99.5 1.3E-13 4.5E-18 130.7 16.6 155 5-193 3-163 (268)
4 2x5n_A SPRPN10, 26S proteasome 99.5 8.6E-13 3E-17 120.0 15.9 153 5-192 2-160 (192)
5 3ibs_A Conserved hypothetical 99.3 3E-11 1E-15 111.9 16.1 164 5-200 11-197 (218)
6 1ijb_A VON willebrand factor; 99.3 7E-11 2.4E-15 108.3 15.0 162 6-200 14-180 (202)
7 2b2x_A Integrin alpha-1; compu 99.2 7.5E-11 2.6E-15 109.8 14.4 170 6-201 23-197 (223)
8 1pt6_A Integrin alpha-1; cell 99.2 1.1E-10 3.8E-15 107.8 14.5 170 5-201 7-182 (213)
9 1q0p_A Complement factor B; VO 99.2 3.5E-10 1.2E-14 104.8 17.9 171 5-206 15-210 (223)
10 3n2n_F Anthrax toxin receptor 99.2 2.7E-10 9.2E-15 102.5 15.4 159 6-200 8-168 (185)
11 1shu_X Anthrax toxin receptor 99.2 4.9E-10 1.7E-14 100.5 15.7 156 4-197 5-163 (182)
12 1n3y_A Integrin alpha-X; alpha 99.2 7.2E-11 2.4E-15 107.6 9.7 165 6-201 10-179 (198)
13 4hqo_A Sporozoite surface prot 99.2 3.6E-10 1.2E-14 108.2 15.0 160 7-201 20-192 (266)
14 1atz_A VON willebrand factor; 99.2 6.1E-10 2.1E-14 100.8 15.3 153 5-193 5-161 (189)
15 2xgg_A Microneme protein 2; A/ 99.1 7.5E-10 2.6E-14 99.3 14.8 139 5-166 17-161 (178)
16 4hqf_A Thrombospondin-related 99.1 5.9E-10 2E-14 107.6 14.1 150 6-190 22-180 (281)
17 1v7p_C Integrin alpha-2; snake 99.1 2E-09 6.9E-14 98.3 16.1 164 5-195 6-174 (200)
18 2odp_A Complement C2; C3/C5 co 99.1 1.7E-09 5.6E-14 113.3 17.7 167 5-201 9-199 (509)
19 1mf7_A Integrin alpha M; cell 99.1 5.1E-10 1.8E-14 101.6 10.5 166 5-201 5-175 (194)
20 2x31_A Magnesium-chelatase 60 99.0 2.2E-11 7.5E-16 110.3 -2.5 166 5-201 5-174 (189)
21 4fx5_A VON willebrand factor t 99.0 1.1E-08 3.8E-13 105.4 17.1 156 6-202 78-244 (464)
22 3hrz_D Complement factor B; se 99.0 6E-09 2.1E-13 114.1 15.6 165 7-201 245-433 (741)
23 1rrk_A Complement factor B; BB 99.0 8E-09 2.8E-13 107.7 15.5 164 7-201 3-191 (497)
24 3zqk_A VON willebrand factor; 98.9 6.7E-09 2.3E-13 94.8 10.4 142 7-189 23-169 (199)
25 1mjn_A Integrin alpha-L; rossm 98.6 1.2E-07 4.1E-12 84.8 10.6 157 6-200 3-164 (179)
26 3k6s_A Integrin alpha-X; cell 98.6 7.5E-08 2.6E-12 108.9 9.6 160 7-197 132-296 (1095)
27 3rag_A Uncharacterized protein 98.3 4E-06 1.4E-10 77.5 11.0 96 5-113 134-229 (242)
28 2nvo_A RO sixty-related protei 98.1 2.4E-05 8.3E-10 81.9 13.1 157 5-195 362-534 (535)
29 1yvr_A RO autoantigen, 60-kDa 98.1 3E-05 1E-09 81.4 13.7 151 6-194 369-537 (538)
30 2ww8_A RRGA, cell WALL surface 98.0 3.8E-05 1.3E-09 84.7 13.1 123 7-133 226-392 (893)
31 2iue_A Pactolus I-domain; memb 97.4 0.0017 6E-08 58.9 12.2 108 8-131 6-116 (212)
32 3rag_A Uncharacterized protein 96.6 0.0048 1.6E-07 56.9 8.0 67 118-198 8-74 (242)
33 3fcs_B Integrin beta-3; beta p 96.6 0.017 5.7E-07 61.8 13.0 152 8-163 114-310 (690)
34 2nut_A Protein transport prote 96.4 0.17 5.9E-06 55.0 19.8 212 5-236 132-423 (769)
35 1pcx_A Protein transport prote 96.2 0.044 1.5E-06 59.9 13.6 173 6-196 188-408 (810)
36 3vi3_B Integrin beta-1; beta p 96.0 0.087 3E-06 52.9 13.5 149 8-164 125-317 (454)
37 1m2v_B SEC24, protein transpor 95.7 0.089 3.1E-06 58.1 13.3 174 6-196 304-524 (926)
38 3k6s_B Integrin beta-2; cell r 95.5 0.035 1.2E-06 59.3 9.1 119 8-131 107-245 (687)
39 1m2o_A SEC23, protein transpor 95.3 1.5 5E-05 47.6 21.2 211 6-236 122-417 (768)
40 3t3p_B Integrin beta-3; integr 95.0 0.082 2.8E-06 53.5 9.4 120 8-131 114-254 (472)
41 3v4v_B Integrin beta-7; cell a 94.8 0.14 4.7E-06 52.1 10.6 119 8-131 135-273 (503)
42 3eh1_A Protein transport prote 94.1 1.3 4.5E-05 47.8 16.8 169 6-196 161-372 (751)
43 3efo_B SEC24 related gene fami 93.5 2.1 7.1E-05 46.4 17.1 172 6-197 178-398 (770)
44 3eh2_A Protein transport prote 93.1 1.8 6.2E-05 46.9 15.9 171 6-196 174-393 (766)
45 3q4o_A Uncharacterized protein 56.7 15 0.0005 32.3 5.2 43 427-471 66-108 (196)
46 2e6c_A 5'-nucleotidase SURE; S 27.6 1E+02 0.0036 27.9 6.2 34 124-166 3-36 (244)
47 1j9j_A Stationary phase surviV 26.4 1.1E+02 0.0038 27.8 6.2 33 124-165 3-35 (247)
48 1l5x_A SurviVal protein E; str 25.0 1.3E+02 0.0043 28.0 6.3 33 124-165 3-35 (280)
49 2phj_A 5'-nucleotidase SURE; S 24.2 1.3E+02 0.0043 27.5 6.0 33 124-165 4-36 (251)
50 2v4n_A Multifunctional protein 22.9 1.4E+02 0.0047 27.3 6.1 33 124-165 4-36 (254)
51 2wqk_A 5'-nucleotidase SURE; S 21.5 1.6E+02 0.0053 26.9 6.1 34 123-165 3-36 (251)
No 1
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=100.00 E-value=2.7e-79 Score=650.10 Aligned_cols=454 Identities=23% Similarity=0.401 Sum_probs=386.8
Q ss_pred CCC--CceEEEEEEecCCCcCC-------CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEE
Q 011878 1 MAR--TREALLLLLDVSPSMHS-------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKV 71 (475)
Q Consensus 1 m~~--~ke~~vflID~s~sM~~-------~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~ 71 (475)
||. +||++|||||+|+||++ +|+.|++++..++++||+.+++|+||||+|||+.+.|+++.+ ++|+||++
T Consensus 1 ~~~~~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d-~~y~~i~v 79 (565)
T 1jey_B 1 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGG-DQYQNITV 79 (565)
T ss_dssp -----CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTT-TCSTTEEE
T ss_pred CCCCCCceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccc-cCCCceEE
Confidence 666 57999999999999986 478899999999999999999999999999999999998765 68999999
Q ss_pred EeecCCCCHHHHHHhhc-CCCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHH
Q 011878 72 LQDIKVVDGHLVQSLKH-LPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIAR 150 (475)
Q Consensus 72 ~~~l~~~~~~~i~~L~~-l~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~ 150 (475)
+++|+.++++.++.|++ +..+.+.+++.+||++|+++|.+.+.+++...||||||||+++|++. .++..+++
T Consensus 80 l~~l~~~~~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~-------~~~~~~a~ 152 (565)
T 1jey_B 80 HRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK-------SQLDIIIH 152 (565)
T ss_dssp EEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC-------TTHHHHHH
T ss_pred eecCCCCCHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCH-------HHHHHHHH
Confidence 99999999999999998 76655678999999999999987544444468999999999999753 47889999
Q ss_pred HHhhcCcEEE-EEEeccC-----CCC------------CCCcc----ccccchHHHHHHhhcCCC-----eEeehhhHHH
Q 011878 151 QMVAFGLRMK-NIVVRAS-----LSG------------EPHMR----VIIENDNLLNIFSKKSSA-----KTLFVDSTTS 203 (475)
Q Consensus 151 ~l~~~~I~l~-~i~i~~~-----~~~------------~~~~~----~~~~n~~~l~~~~~~~~g-----~~~~~~~~~~ 203 (475)
++++.||.|+ +++++.. ++. .++.. ....|+.+|+.+++.++| .+++++++++
T Consensus 153 ~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~ 232 (565)
T 1jey_B 153 SLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLR 232 (565)
T ss_dssp HHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTT
T ss_pred HHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHHH
Confidence 9999999999 8887532 110 11111 124678899999999989 8999999999
Q ss_pred hhccCccccCCCceeeeeeEeecCCeEEEEEEEeeccccCC-CcceE-ecccCCCCccccccceeEEEEEeccCCCCCCC
Q 011878 204 LRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKF-PTLKK-YSDKAPSTDKFATHEVKVDYEYKSVEDPSKVV 281 (475)
Q Consensus 204 ll~~~~~r~~~~r~~~~~~l~ig~~~~I~V~~y~~~~~~~~-p~~~~-~~~~~~~~~~~~~~~v~~~~~y~~~~d~~~~v 281 (475)
++..++.+.++++ +|+|.|+||++++|+|++|++++++++ +..++ +..+. ....|+.++.|+.+++++++|
T Consensus 233 ~l~~~k~~~~r~~-~~~g~l~lg~~v~I~V~~Y~~~~~~~~~~~~~~l~~~~~------~~~~V~~~~~y~v~~~~~~~V 305 (565)
T 1jey_B 233 KLCVFKKIERHSI-HWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTL------KKEDIQKETVYCLNDDDETEV 305 (565)
T ss_dssp SSTTTGGGCCCCC-CEEEEEEETTTEEEEEEEEEEECCCCCCCCCEEEETTTC------CSTTEEEEEEEEESSSSCCEE
T ss_pred HhccCcceeeccc-ccccceEECCCcEEEEEEEeeehhcccCCceEEecCccC------CCcceEEEEEEEecCCCCccc
Confidence 9988888887765 799999999999999999999999884 44333 33331 135799999994467889999
Q ss_pred CcccccccceeCCceEeCChhhHHhhccCCC-ccEEEEeEeeCCCcccccccCce-EEEEcCCCChhhHHHHHHHHHHHH
Q 011878 282 PPEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDV-NLFIAEPGNSRATVAVSALARAMK 359 (475)
Q Consensus 282 ~~~~~~k~y~yG~~~V~~~~~e~~~~k~~~~-~~l~llGF~~~~~i~~~~~~~~~-~~i~p~~~~~~s~~~f~aL~~am~ 359 (475)
+++|++|||+||+++|+|+++|++.++..+. |+|+|+||+++++|+++|+++++ ||++|+.++.+|..+|+||++||.
T Consensus 306 ~~~di~kgy~yg~~~V~~~~ee~~~~~~~~~~~~l~ilgFv~~~~i~~~~~~~~s~y~l~p~~~~~~s~~af~aL~~al~ 385 (565)
T 1jey_B 306 LKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALD 385 (565)
T ss_dssp CGGGEEEEEEETTEEEECCHHHHHHHSCCCCCSEEEEEEEEEGGGSCGGGCEEEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ChHHeeeeEecCCeeeccCHHHHHHhcccCCCCcEEEEeeccHHHCCHhhccCCceEEEeCCCCChhhHHHHHHHHHHHH
Confidence 9999999999999999999999999998764 99999999999999999999986 899998878899999999999999
Q ss_pred hcCeEEEEEEEecCCCCceEEEEecccccCCCCCCCeEEEecCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 011878 360 EMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKM 439 (475)
Q Consensus 360 ~~~~vai~r~v~r~~~~~~~v~~L~P~~~~~~~~~~gl~~~~LPf~dDiR~~~f~~l~~~~~~~~~~~~q~~~~~~lI~~ 439 (475)
++++|||||||+|.++. +.+++|+|+.+.. ++||++++|||+||||.++||++... ....|+++|+++|++||++
T Consensus 386 ~~~kvaIar~v~r~~~~-p~l~aL~P~~~~~---~~gl~l~~Lpf~ddvR~~~f~~l~~~-~~~~~~~~~l~~a~~lId~ 460 (565)
T 1jey_B 386 DLDMVAIVRYAYDKRAN-PQVGVAFPHIKHN---YECLVYVQLPFMEDLRQYMFSSLKNS-KKYAPTEAQLNAVDALIDS 460 (565)
T ss_dssp HTTEEEEEEEESSSSSC-CEEEEEEEEECSS---CEEEEEEECCCGGGBCCCCCCCSTTC-SSSCCCHHHHHHHHHHHHH
T ss_pred HCCCEEEEEEEEcCCCC-cEEEEEeccccCC---CCeEEEEccCCHHHcccccCCCCCcc-ccCCCCHHHHHHHHHHHHh
Confidence 99999999999999986 4577899997653 58999999999999999999987521 2457999999999999999
Q ss_pred cCCCCCCC-----CcCCCCCCCCChhhHHHHHHhhhcccc
Q 011878 440 LDLAPSGK-----GEILQPELTPNPALEVLNICGYFGFLD 474 (475)
Q Consensus 440 l~l~~~~~-----~~~~~p~~~~NP~lq~~y~~l~~~a~~ 474 (475)
|+++..++ ++.|+|+.++||++|+||++|+++||+
T Consensus 461 m~~~~~~~~~~~~~~~~~p~~~~np~lq~~~~~i~~kal~ 500 (565)
T 1jey_B 461 MSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALH 500 (565)
T ss_dssp TBCEECCTTSSCCEESCCGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ccCCcccccCcchhcccCcccCCCHHHHHHHHHHHHHhcC
Confidence 99963221 236999999999999999999999986
No 2
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=100.00 E-value=3.6e-78 Score=645.15 Aligned_cols=433 Identities=18% Similarity=0.246 Sum_probs=364.3
Q ss_pred CCceEEEEEEecCCCcCC--------CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEee
Q 011878 3 RTREALLLLLDVSPSMHS--------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQD 74 (475)
Q Consensus 3 ~~ke~~vflID~s~sM~~--------~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~ 74 (475)
++||++|||||+|+||++ +|+.|++++..++++||+++++|+||||+|||+.+.|++ .|+||+++++
T Consensus 33 ~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l-----~~d~i~v~~~ 107 (609)
T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSV-----NFKNIYVLQE 107 (609)
T ss_dssp -CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTT-----CCTTEEEEEE
T ss_pred cCceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcC-----CCCCeEEEec
Confidence 589999999999999987 377899999999999999999999999999999999987 7899999999
Q ss_pred cCCCCHHHHHHhhcCCC-----------C-CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCch
Q 011878 75 IKVVDGHLVQSLKHLPQ-----------G-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKE 142 (475)
Q Consensus 75 l~~~~~~~i~~L~~l~~-----------~-~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~ 142 (475)
|+.++++.++.|.++.. + .+.+++.+|||+|+++|.+ .+++...|+||||||+++|++. ++...
T Consensus 108 L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~--~~~k~~~k~IiL~TDg~~p~~~--~~~~~ 183 (609)
T 1jey_A 108 LDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSD--VQFKMSHKRIMLFTNEDNPHGN--DSAKA 183 (609)
T ss_dssp EECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHT--CSSCEEEEEEEEEESCSCTTTT--CHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHh--hchhhcCCEEEEEcCCCCCCCC--chHHH
Confidence 99999999999999753 3 3467999999999999875 2334579999999999999864 11123
Q ss_pred hhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHH----HHhhcCCCeEeehhhHHHhhccCccccCCCcee
Q 011878 143 DQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLN----IFSKKSSAKTLFVDSTTSLRGARKTRDISPVTI 218 (475)
Q Consensus 143 ~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~----~~~~~~~g~~~~~~~~~~ll~~~~~r~~~~r~~ 218 (475)
.++..+|++|++.||+|++|+++.+ +.+....|.. .++. .......+... .+.+++..++.|.+++|++
T Consensus 184 ~~~~~~a~~l~~~gI~i~~igig~~--~~fd~~~fy~--~~~~~~~~~~~~~~~~~~~---~l~~ll~~i~~k~~~~R~~ 256 (609)
T 1jey_A 184 SRARTKAGDLRDTGIFLDLMHLKKP--GGFDISLFYR--DIISIAEDEDLRVHFEESS---KLEDLLRKVRAKETRKRAL 256 (609)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEBCCT--TCCCTTTTGG--GTCC--------CCCCCBC---SHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCC--Cccchhhhhh--hhhccccccchhcccCchh---hHHHHHHHHHhhhccceee
Confidence 4789999999999999999999752 2122111110 0000 00001111122 3457778889999999999
Q ss_pred eeeeEeecCCeEEEEEEEeeccccCCCcce-EecccCCCCccccccceeEEEEEeccCCCCCCCCcccccccceeCCceE
Q 011878 219 FRGDLELSEKMKIKVWVYKKTGEEKFPTLK-KYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVV 297 (475)
Q Consensus 219 ~~~~l~ig~~~~I~V~~y~~~~~~~~p~~~-~~~~~~~~~~~~~~~~v~~~~~y~~~~d~~~~v~~~~~~k~y~yG~~~V 297 (475)
|+|+|+||++++|+|++|+++++++++..+ .+..+ ...|+.+++|+ +++++++|+++|++|||+||+++|
T Consensus 257 ~~g~l~lg~~v~I~V~~Y~~t~~~~~~~~~~l~~~~--------~~~V~~~~~~~-~~~~g~~V~~~di~kgy~yg~~~V 327 (609)
T 1jey_A 257 SRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRET--------NEPVKTKTRTF-NTSTGGLLLPSDTKRSQIYGSRQI 327 (609)
T ss_dssp EEEEEESSSSCEEEEEEECSBCCCCCCCCEEEETTT--------TEEEEEEEEEE-ETTTCCBCCGGGEEEEEEETTEEE
T ss_pred eeeeeEECCCCEEEEEEEeecccccCCCcEEEcccC--------CccceEEEEEE-eCCCCCccChhhceeeeeeCCeee
Confidence 999999999999999999999999876544 44433 35788889999 478899999999999999999999
Q ss_pred eCChhhHHhhccCCCccEEEEeEeeCCCcccccccCceEEEEcCCC-ChhhHHHHHHHHHHHHhcCeEEEEEEEecCCCC
Q 011878 298 PISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG-NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQ 376 (475)
Q Consensus 298 ~~~~~e~~~~k~~~~~~l~llGF~~~~~i~~~~~~~~~~~i~p~~~-~~~s~~~f~aL~~am~~~~~vai~r~v~r~~~~ 376 (475)
+|+++|++.++..++|+|+|+||+++++|+++|+++++|||+|++. ..+|.++|+||++||.++++|||||||+|.++.
T Consensus 328 ~~~~ee~~~~k~~~~~~i~ilgFv~~~~i~~~~~~~~~~~l~P~~~~~~~s~~afsaL~~al~~~~kvaIar~v~r~~~~ 407 (609)
T 1jey_A 328 ILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIP 407 (609)
T ss_dssp EECHHHHHHTTCCSCSEEEEEEEEEGGGSCGGGCCSCCEEEEECTTTEETHHHHHHHHHHHHHHTTEEEEEEEECSSSCC
T ss_pred ccCHHHHHHHhccCCCceEEEeecchHhCchhhccCCceEEecCCCCccchHHHHHHHHHHHHhcCcEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999975 457999999999999999999999999999976
Q ss_pred ceEEEEecccccC-C----CCCCCeEEEecCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCcCC
Q 011878 377 SVVVGVLTPNVSE-K----INIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEIL 451 (475)
Q Consensus 377 ~~~v~~L~P~~~~-~----~~~~~gl~~~~LPf~dDiR~~~f~~l~~~~~~~~~~~~q~~~~~~lI~~l~l~~~~~~~~~ 451 (475)
| .+++|+|+.+. + +..++||++++|||+||||+++||+ ...++++|+++|++||++|+++ |
T Consensus 408 p-~l~aL~P~~~~~d~~~~q~~~~gl~l~~Lpf~ddvR~~~f~~------~~~~~~~~l~~a~~lI~~m~~~-------~ 473 (609)
T 1jey_A 408 P-YFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE------KIMATPEQVGKMKAIVEKLRFT-------Y 473 (609)
T ss_dssp C-EEEEEEEECCEECTTCCEEECSEEEEEECCCGGGBCCCCCCC------CCCCCHHHHHHHHHHHHHTBCC-------C
T ss_pred C-EEEEEeCccccccccCCcCCCCeeEEEecCccccccCCCCcc------cCCCCHHHHHHHHHHHHhcccC-------C
Confidence 5 46689998752 1 1246899999999999999999864 4579999999999999999997 9
Q ss_pred CCCCCCChhhHHHHHHhhhcccc
Q 011878 452 QPELTPNPALEVLNICGYFGFLD 474 (475)
Q Consensus 452 ~p~~~~NP~lq~~y~~l~~~a~~ 474 (475)
+|+.|+||++|+||++|+++||+
T Consensus 474 ~p~~~~np~lq~~~~~i~a~al~ 496 (609)
T 1jey_A 474 RSDSFENPVLQQHFRNLEALALD 496 (609)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHTT
T ss_pred CcccCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 3
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=130.66 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=121.7
Q ss_pred ceEEEEEEecCCCcCC------CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC
Q 011878 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (475)
Q Consensus 5 ke~~vflID~s~sM~~------~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~ 78 (475)
-|+||||||+|.||.. +++.+++++..|++.+.-.+|.|.||||.|.+.. ..++.+++.-
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~--------------~~vl~plT~D 68 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGAN--------------PRVLSTFTAE 68 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS--------------CEEEEEEESC
T ss_pred ceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCc--------------ceeccCCcch
Confidence 5899999999999975 4778889999999988778999999999998762 1235566655
Q ss_pred CHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcE
Q 011878 79 DGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (475)
Q Consensus 79 ~~~~i~~L~~l~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~ 158 (475)
-...+..|+.+..+. ..++..||.+|+..|+.+ ..+...+||+||||++... ...++..+++.+++.||.
T Consensus 69 ~~~il~aL~~l~~~G-~T~l~~gL~~A~~aLk~~--~~k~~~~rIIlf~ds~~~~-------~~~~l~~lak~lkk~gI~ 138 (268)
T 4b4t_W 69 FGKILAGLHDTQIEG-KLHMATALQIAQLTLKHR--QNKVQHQRIVAFVCSPISD-------SRDELIRLAKTLKKNNVA 138 (268)
T ss_dssp HHHHHHHHTTCCCCS-CCCHHHHHHHHHHHHHTC--SCTTSEEEEEEEECSCCSS-------CHHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHhhhcCcCC-CCChHHHHHHHHHHHHhc--ccCCCceEEEEEECCCCCC-------CHHHHHHHHHHHHHcCCE
Confidence 566778888887654 468999999999998763 2346788999999987653 246899999999999999
Q ss_pred EEEEEeccCCCCCCCccccccchHHHHHHhhcCCC
Q 011878 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA 193 (475)
Q Consensus 159 l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g 193 (475)
+.+|+++. ++ .|...|+.|+...+|
T Consensus 139 v~vIgFG~---~~-------~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 139 VDIINFGE---IE-------QNTELLDEFIAAVNN 163 (268)
T ss_dssp EEEEEESS---CC-------SSCCHHHHHHHHHCS
T ss_pred EEEEEeCC---Cc-------cchHHHHHHHHHhcC
Confidence 99999974 11 245677777776654
No 4
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.47 E-value=8.6e-13 Score=119.98 Aligned_cols=153 Identities=16% Similarity=0.255 Sum_probs=113.1
Q ss_pred ceEEEEEEecCCCcCC------CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC
Q 011878 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (475)
Q Consensus 5 ke~~vflID~s~sM~~------~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~ 78 (475)
+|+++|+||+|+||.. +++.+++++..|+..++-.++.|+||||.|+++.+ +++.|++.-
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a--------------~~~~plT~d 67 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSP--------------QVLSTLTRD 67 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC--------------CEEEEEESC
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCc--------------EEecCCCCC
Confidence 6899999999999985 47888999999999888889999999999998621 124566655
Q ss_pred CHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcE
Q 011878 79 DGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (475)
Q Consensus 79 ~~~~i~~L~~l~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~ 158 (475)
.......|+++..+. ..++.+||..|.++|.+. ..+...+||++|++++.. . ...++..+++.+++.||.
T Consensus 68 ~~~i~~~L~~l~~~g-~t~l~~aL~~A~~~l~~~--~~~~~~~riiil~~~~~~-~------~~~~~~~~a~~lk~~gi~ 137 (192)
T 2x5n_A 68 YGKFLSAMHDLPVRG-NAKFGDGIQIAQLALKHR--ENKIQRQRIVAFVGSPIV-E------DEKNLIRLAKRMKKNNVA 137 (192)
T ss_dssp HHHHHHHHTTCCCCS-CCCHHHHHHHHHHHHHTC--SCTTSEEEEEEEECSCCS-S------CHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHcCCCCC-CchHHHHHHHHHHHHHhc--cccCCCceEEEEEECCCC-C------CchhHHHHHHHHHHCCCE
Confidence 556677788876543 478999999999998652 222345667666654432 1 236788899999999999
Q ss_pred EEEEEeccCCCCCCCccccccchHHHHHHhhcCC
Q 011878 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSS 192 (475)
Q Consensus 159 l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~ 192 (475)
+.+++++.. + .|+. ++.++...+
T Consensus 138 v~~Ig~G~~---~-------~~~~-l~~la~~~n 160 (192)
T 2x5n_A 138 IDIIHIGEL---Q-------NESA-LQHFIDAAN 160 (192)
T ss_dssp EEEEEESCC-------------CH-HHHHHHHHC
T ss_pred EEEEEeCCC---C-------ccHH-HHHHHHhcc
Confidence 999999741 1 2346 888887743
No 5
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=3e-11 Score=111.86 Aligned_cols=164 Identities=19% Similarity=0.190 Sum_probs=116.4
Q ss_pred ceEEEEEEecCCCcCC------CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC
Q 011878 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (475)
Q Consensus 5 ke~~vflID~s~sM~~------~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~ 78 (475)
.-.++|+||+|.||.. ++..+++.+..++. ..++|+||||.|+++. .+..|++.-
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~----~~~~~~v~lv~F~~~~---------------~~~~~~~~~ 71 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVD----ELDNDKVGMIVFAGDA---------------FTQLPITSD 71 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHH----TCSSCEEEEEEESSSE---------------EEEEEEESC
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHH----hCCCCeEEEEEECCCc---------------eEeCCCCCC
Confidence 4468999999999985 47778888888887 4579999999998761 234566543
Q ss_pred CHHHHHHhhcCCCC---CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhc
Q 011878 79 DGHLVQSLKHLPQG---TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAF 155 (475)
Q Consensus 79 ~~~~i~~L~~l~~~---~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~ 155 (475)
.......|+.+..+ .+.+++.+||..|.+++.. .....+.||||||+....+ .+...++.+++.
T Consensus 72 ~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~----~~~~~~~ivllTDG~~~~~---------~~~~~~~~~~~~ 138 (218)
T 3ibs_A 72 YISAKMFLESISPSLISKQGTAIGEAINLATRSFTP----QEGVGRAIIVITDGENHEG---------GAVEAAKAAAEK 138 (218)
T ss_dssp HHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCS----CSSCCEEEEEEECCTTCCS---------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhh----CCCCCcEEEEEcCCCCCCC---------cHHHHHHHHHhc
Confidence 33444556677542 3346899999999887543 2246789999999977532 366778889999
Q ss_pred CcEEEEEEeccC----CC--CC--------CCccccccchHHHHHHhhcCCCeEeehhh
Q 011878 156 GLRMKNIVVRAS----LS--GE--------PHMRVIIENDNLLNIFSKKSSAKTLFVDS 200 (475)
Q Consensus 156 ~I~l~~i~i~~~----~~--~~--------~~~~~~~~n~~~l~~~~~~~~g~~~~~~~ 200 (475)
||.+.+|+++.. ++ +. ........++..|+.+|..++|.++.+.+
T Consensus 139 ~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 139 GIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp TEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred CCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 999999999741 00 00 00011135678999999999999876654
No 6
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.27 E-value=7e-11 Score=108.34 Aligned_cols=162 Identities=10% Similarity=0.123 Sum_probs=112.7
Q ss_pred eEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC-C-HHH
Q 011878 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHL 82 (475)
Q Consensus 6 e~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~-~-~~~ 82 (475)
--++|+||.|.||.. .++.+++.+..++.+.-+...+++||||.|+++. .+..++... + ...
T Consensus 14 ~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 78 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGS---------------HAYIGLKDRKRPSEL 78 (202)
T ss_dssp EEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSE---------------EEEECTTCCCCHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCc---------------eEEEecCCCCCHHHH
Confidence 458999999999985 6888888999888865444578999999999772 123455432 2 334
Q ss_pred HHHhhcCCCCCC-CCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 011878 83 VQSLKHLPQGTC-AGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (475)
Q Consensus 83 i~~L~~l~~~~~-~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~ 161 (475)
.+.|+++....+ .+.+.+||..|.+.+... +.+....|.|+|||||..... ..+.+...++.+++.||.+..
T Consensus 79 ~~~i~~l~~~gg~~T~~~~aL~~a~~~~~~~-~~r~~~~~~iillTDG~~~~~------~~~~~~~~a~~l~~~gi~i~~ 151 (202)
T 1ijb_A 79 RRIASQVKYAGSQVASTSEVLKYTLFQIFSK-IDRPEASRIALLLMASQEPQR------MSRNFVRYVQGLKKKKVIVIP 151 (202)
T ss_dssp HHHHHTCCCCCBSCCCHHHHHHHHHHHTSSS-CSCTTSEEEEEEEECCCCCGG------GCTTHHHHHHHHHHTTEEEEE
T ss_pred HHHHHhCcCCCCCcCcHHHHHHHHHHHHhcc-CCCCCCCeEEEEEccCCCCcc------chHHHHHHHHHHHHCCCEEEE
Confidence 566777764332 368899999998654321 222345788999999987422 123577788999999999999
Q ss_pred EEeccCCCCCCCccccccchHHHHHHhhcC-CCeEeehhh
Q 011878 162 IVVRASLSGEPHMRVIIENDNLLNIFSKKS-SAKTLFVDS 200 (475)
Q Consensus 162 i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~-~g~~~~~~~ 200 (475)
||++.. .+...|+.+++.. ++.++...+
T Consensus 152 igvG~~-----------~~~~~L~~iA~~~~~~~~~~~~~ 180 (202)
T 1ijb_A 152 VGIGPH-----------ANLKQIRLIEKQAPENKAFVLSS 180 (202)
T ss_dssp EEESTT-----------SCHHHHHHHHHHCTTCCCEEESS
T ss_pred EecCCc-----------CCHHHHHHHhCCCCcccEEEeCC
Confidence 999631 2357788888753 556555443
No 7
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.25 E-value=7.5e-11 Score=109.84 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=113.9
Q ss_pred eEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCC--HHHH
Q 011878 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD--GHLV 83 (475)
Q Consensus 6 e~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~--~~~i 83 (475)
--++|+||.|.||. .++.+++.+..++.+.-+..++++||||.|+++. .+..++.... .+.+
T Consensus 23 ~div~vlD~SgSM~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~---------------~~~~~l~~~~~~~~~~ 86 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY-PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENV---------------THEFNLNKYSSTEEVL 86 (223)
T ss_dssp EEEEEEEECSTTCC-CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSE---------------EEEECTTTCCSHHHHH
T ss_pred ceEEEEEECCCChh-hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCc---------------cEEEecCCCCCHHHHH
Confidence 34899999999999 5788888888888754334689999999998762 1234553322 3456
Q ss_pred HHhhcCCCCCC-CCChhHHHHHHHHHHHH-HhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 011878 84 QSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (475)
Q Consensus 84 ~~L~~l~~~~~-~gd~~daL~va~~~l~~-~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~ 161 (475)
+.|+.+....+ ..++.+||..|.+++.. ..+.+....|.|||||||....+ ..+...++.+++.||.+.+
T Consensus 87 ~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~--------~~~~~~~~~~~~~gi~v~~ 158 (223)
T 2b2x_A 87 VAANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN--------YRLKQVIQDCEDENIQRFS 158 (223)
T ss_dssp HHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG--------GGHHHHHHHHHTTTEEEEE
T ss_pred HHHHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC--------ccHHHHHHHHHHCCCEEEE
Confidence 67777754332 36889999999887432 11223345788999999976421 2477788899999999999
Q ss_pred EEeccCCCCCCCccccccchHHHHHHhhc-CCCeEeehhhH
Q 011878 162 IVVRASLSGEPHMRVIIENDNLLNIFSKK-SSAKTLFVDST 201 (475)
Q Consensus 162 i~i~~~~~~~~~~~~~~~n~~~l~~~~~~-~~g~~~~~~~~ 201 (475)
|+++..... .... .......|+.++.. ++|.++...+.
T Consensus 159 igvG~~~~~-~~~~-~~~~~~~L~~iA~~p~~g~~~~~~~~ 197 (223)
T 2b2x_A 159 IAILGHYNR-GNLS-TEKFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp EEECGGGC----CC-CHHHHHHHHTTSCSSGGGTEEEESST
T ss_pred EEecCcccc-cccc-chhHHHHHHHHhCCCchhcEEEeCCH
Confidence 999642210 0000 00113678888887 67777765544
No 8
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.23 E-value=1.1e-10 Score=107.85 Aligned_cols=170 Identities=13% Similarity=0.123 Sum_probs=113.9
Q ss_pred ceEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCC--HHH
Q 011878 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD--GHL 82 (475)
Q Consensus 5 ke~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~--~~~ 82 (475)
.--++|+||.|.||. .+..+++.+..++...-+..++++||||.|+++. .+..++.... ...
T Consensus 7 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~---------------~~~~~l~~~~~~~~~ 70 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY-PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENV---------------THEFNLNKYSSTEEV 70 (213)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSE---------------EEEECTTTCSSHHHH
T ss_pred CccEEEEEECCCChh-hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCc---------------cEEEeccccCCHHHH
Confidence 446899999999999 5788888888888754344689999999998762 1234553322 245
Q ss_pred HHHhhcCCCCCC-CCChhHHHHHHHHHHHH-HhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 011878 83 VQSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (475)
Q Consensus 83 i~~L~~l~~~~~-~gd~~daL~va~~~l~~-~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~ 160 (475)
++.|..+....+ ..++..||..|.+.+.. ..+.+....|.|+|||||....+ ..+...++.+++.||.+.
T Consensus 71 ~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~--------~~~~~~~~~~~~~gi~i~ 142 (213)
T 1pt6_A 71 LVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN--------HRLKKVIQDCEDENIQRF 142 (213)
T ss_dssp HHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS--------HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC--------ccHHHHHHHHHHCCCEEE
Confidence 667777754333 35889999999886432 11223346788999999976421 246778889999999999
Q ss_pred EEEeccCCC-CCCCccccccchHHHHHHhhc-CCCeEeehhhH
Q 011878 161 NIVVRASLS-GEPHMRVIIENDNLLNIFSKK-SSAKTLFVDST 201 (475)
Q Consensus 161 ~i~i~~~~~-~~~~~~~~~~n~~~l~~~~~~-~~g~~~~~~~~ 201 (475)
+|+++.... +.... ......|+.++.. .+|.++...+.
T Consensus 143 ~igig~~~~~~~~~~---~~~~~~L~~iA~~~~~g~~~~~~~~ 182 (213)
T 1pt6_A 143 SIAILGSYNRGNLST---EKFVEEIKSIASEPTEKHFFNVSDE 182 (213)
T ss_dssp EEEECHHHHHTTCCC---HHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred EEEeccccccccccc---hhhHHHHHHHhCCCchhcEEEeCCH
Confidence 999964110 00000 0113678888887 56777765544
No 9
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.23 E-value=3.5e-10 Score=104.83 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=114.2
Q ss_pred ceEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCC----
Q 011878 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD---- 79 (475)
Q Consensus 5 ke~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~---- 79 (475)
.--++|+||.|.||.. .+..+++.+..++.+.-...++++||||.|++.. .+..++..+.
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~ 79 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNA 79 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCH
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCcc---------------ceeeccccCCCCCH
Confidence 3468999999999986 6788888999888765445678999999999873 1234444332
Q ss_pred HHHHHHhhcCCCC----CCCCChhHHHHHHHHHHHHHhccC----cceeeEEEEEeCCCCCCCCCCCCCchhhHHHHH--
Q 011878 80 GHLVQSLKHLPQG----TCAGDFLDAIVVGVDMLIKKYGET----YKGKKHLCLITDALCPLKDPDVGTKEDQVSTIA-- 149 (475)
Q Consensus 80 ~~~i~~L~~l~~~----~~~gd~~daL~va~~~l~~~~~~~----~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~-- 149 (475)
....+.|+.+... .+..++.+||..|.++|...-... ....+.|||||||....+. +...+...+
T Consensus 80 ~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~-----~~~~~~~~~~~ 154 (223)
T 1q0p_A 80 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-----DPITVIDEIRD 154 (223)
T ss_dssp HHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS-----CTHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCC-----ChHHHHHHHHH
Confidence 3456677877642 345689999999999876421111 2456779999999876432 112232323
Q ss_pred --------HHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCC--eEeehhhHHHhhc
Q 011878 150 --------RQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA--KTLFVDSTTSLRG 206 (475)
Q Consensus 150 --------~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g--~~~~~~~~~~ll~ 206 (475)
+.+++.||.+.+|+++.. .+...|+.++...+| .++...+..+|..
T Consensus 155 ~~~~~~~~~~~~~~~i~i~~igvG~~-----------~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~ 210 (223)
T 1q0p_A 155 LLYIGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVFKVKDMENLED 210 (223)
T ss_dssp HTTCSCBTTBCCGGGEEEEEEECSSC-----------CCHHHHHHHSCCCTTCCCEEETTC------
T ss_pred HHhhhhhhhhcccCCcEEEEEEecCc-----------CCHHHHHHHhcCCCCCceEEEcCCHHHHHH
Confidence 234678999999999641 235789999998888 7887776654433
No 10
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.21 E-value=2.7e-10 Score=102.48 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=108.6
Q ss_pred eEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCCHHHHHH
Q 011878 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQS 85 (475)
Q Consensus 6 e~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~~~~i~~ 85 (475)
--++|+||.|.||...+...++.+..++..- .+++++||||.|+++. .+..++..-.....+.
T Consensus 8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~---------------~~~~~l~~~~~~~~~~ 70 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRG---------------TTLMKLTEDREQIRQG 70 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSE---------------EEEEEEECCHHHHHHH
T ss_pred eeEEEEEeCCCChhhhHHHHHHHHHHHHHHh--CCCCcEEEEEEEecCc---------------eEEeccCCCHHHHHHH
Confidence 3489999999999887777778888887765 4579999999998762 2244665433334344
Q ss_pred hhcCCC--CCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEE
Q 011878 86 LKHLPQ--GTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIV 163 (475)
Q Consensus 86 L~~l~~--~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~ 163 (475)
|+.+.. ..+.+++.+||..|.+.+...........+.|+|||||....+ ........++.+++.||.+..|+
T Consensus 71 i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~------~~~~~~~~~~~~~~~gi~i~~ig 144 (185)
T 3n2n_F 71 LEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED------LFFYSEREANRSRDLGAIVYAVG 144 (185)
T ss_dssp HHHHHTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH------HHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC------cccchHHHHHHHHHCCCEEEEEE
Confidence 554432 1234689999999999775432222246788999999977421 11234678889999999999999
Q ss_pred eccCCCCCCCccccccchHHHHHHhhcCCCeEeehhh
Q 011878 164 VRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDS 200 (475)
Q Consensus 164 i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~~~~~ 200 (475)
++. .+...|+.++.. .+.++...+
T Consensus 145 vg~------------~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 145 VKD------------FNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp CSS------------CCHHHHTTTSSS-GGGEEEHHH
T ss_pred ecc------------CCHHHHHHHhCC-CCCeEEecc
Confidence 952 134667777754 355666655
No 11
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.18 E-value=4.9e-10 Score=100.51 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=105.5
Q ss_pred CceEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCCHHHH
Q 011878 4 TREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLV 83 (475)
Q Consensus 4 ~ke~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~~~~i 83 (475)
..--++|+||.|.||.......++.+..++..- -+++|+||||.|++.. .+..++........
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~ 67 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERF--VSPEMRLSFIVFSSQA---------------TIILPLTGDRGKIS 67 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSE---------------EEEEEEECCHHHHH
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHh--cCCCceEEEEEeCCCc---------------eEEECCCCCHHHHH
Confidence 345689999999999876544556666666543 2489999999998762 12344443222233
Q ss_pred HHhhcC---CCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 011878 84 QSLKHL---PQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (475)
Q Consensus 84 ~~L~~l---~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~ 160 (475)
+.|+.+ ..+ +.+++.+||..|.+++.... .....+.|+||||+..... ....+...++.+++.||.+.
T Consensus 68 ~~l~~l~~~~~~-g~T~~~~al~~a~~~l~~~~--~~~~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~~~i~i~ 138 (182)
T 1shu_X 68 KGLEDLKRVSPV-GETYIHEGLKLANEQIQKAG--GLKTSSIIIALTDGKLDGL------VPSYAEKEAKISRSLGASVY 138 (182)
T ss_dssp HHHHHHHTCCCC-SCCCHHHHHHHHHHHHHHHT--GGGSCEEEEEEECCCCCTT------HHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhcccCCCC-CCchHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCcCCC------CchhHHHHHHHHHhCCCEEE
Confidence 334433 333 24689999999999987642 2245789999999986421 22345667888999999999
Q ss_pred EEEeccCCCCCCCccccccchHHHHHHhhcCCCeEee
Q 011878 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLF 197 (475)
Q Consensus 161 ~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~~ 197 (475)
+|+++. .+...|+.++...+|.++.
T Consensus 139 ~igvg~------------~~~~~L~~ia~~~~~~~~~ 163 (182)
T 1shu_X 139 CVGVLD------------FEQAQLERIADSKEQVFPV 163 (182)
T ss_dssp EEECSS------------CCHHHHHHHSSSGGGEEES
T ss_pred EEeCCc------------CCHHHHHHHhCCCCceEEc
Confidence 999952 1246788888877665543
No 12
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.17 E-value=7.2e-11 Score=107.58 Aligned_cols=165 Identities=18% Similarity=0.124 Sum_probs=109.9
Q ss_pred eEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCC--HHH
Q 011878 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD--GHL 82 (475)
Q Consensus 6 e~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~--~~~ 82 (475)
--++|+||.|.||.. .+..+++.+..++.... .++++||||.|++... +..++.... ...
T Consensus 10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~~---------------~~~~~~~~~~~~~~ 72 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQ---------------THFTFEEFRRSSNP 72 (198)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSEE---------------EEECHHHHHHCSSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCcc---------------EEEecCccCCHHHH
Confidence 468999999999987 46777788887777543 7999999999998721 123332110 123
Q ss_pred HHHhhcCCCCCCCCChhHHHHHHHHHHHHH-hccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 011878 83 VQSLKHLPQGTCAGDFLDAIVVGVDMLIKK-YGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (475)
Q Consensus 83 i~~L~~l~~~~~~gd~~daL~va~~~l~~~-~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~ 161 (475)
.+.|+.+....+..++.+||..|.+.+... .+.+....+.|+||||+....+. ..+...++.+++.||.+.+
T Consensus 73 ~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~-------~~~~~~~~~~~~~gi~i~~ 145 (198)
T 1n3y_A 73 LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS-------LDYKDVIPMADAAGIIRYA 145 (198)
T ss_dssp GGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS-------SCHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc-------ccHHHHHHHHHHCCCEEEE
Confidence 445555543233568999999998554321 12223457889999999765221 2356667888999999999
Q ss_pred EEeccCCCCCCCccccccchHHHHHHhhcCCCeE-eehhhH
Q 011878 162 IVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKT-LFVDST 201 (475)
Q Consensus 162 i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~-~~~~~~ 201 (475)
|+++....+ ..+...|+.++...+|.+ +...+.
T Consensus 146 igvG~~~~~-------~~~~~~L~~iA~~~~g~~~~~~~~~ 179 (198)
T 1n3y_A 146 IGVGLAFQN-------RNSWKELNDIASKPSQEHIFKVEDF 179 (198)
T ss_dssp EEESGGGGS-------STTHHHHHHHSCSSSGGGEEEESSG
T ss_pred EEccccccc-------cccHHHHHHHHcCCCcccEEEeCCH
Confidence 999642100 124678999999888875 554443
No 13
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.17 E-value=3.6e-10 Score=108.21 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=113.5
Q ss_pred EEEEEEecCCCcCC-Cc-hHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCC----H
Q 011878 7 ALLLLLDVSPSMHS-VL-PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD----G 80 (475)
Q Consensus 7 ~~vflID~s~sM~~-~~-~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~----~ 80 (475)
-++|+||.|.||.. .+ ..+++.+..++.+..+..+.++||||.|++.. .+..++.... .
T Consensus 20 DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~---------------~~~~~l~~~~~~~~~ 84 (266)
T 4hqo_A 20 DLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYT---------------TELIRLGSGQSIDKR 84 (266)
T ss_dssp EEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSE---------------EEEECTTSHHHHCHH
T ss_pred eEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCc---------------ceEEecCCCCccCHH
Confidence 48999999999984 46 47888899998877666789999999999872 2345565542 2
Q ss_pred HHHHHhhcCC---CCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCc
Q 011878 81 HLVQSLKHLP---QGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL 157 (475)
Q Consensus 81 ~~i~~L~~l~---~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I 157 (475)
..++.|+++. ...+.+++.+||..|.++|... +.+....+.|||||||... +...+...++.+++.||
T Consensus 85 ~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~-~~r~~~~~~iIllTDG~~~--------d~~~~~~~a~~l~~~gi 155 (266)
T 4hqo_A 85 QALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDR-VNREKAIQLVILMTDGVPN--------SKYRALEVANKLKQRNV 155 (266)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTT-CSCTTSEEEEEEEECSCCS--------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhc-cccCCCCeEEEEEccCCCC--------CchHHHHHHHHHHHCCC
Confidence 3455566663 2233468999999998887652 2333457889999999764 12467788999999999
Q ss_pred EEEEEEeccCCCCCCCccccccchHHHHHHhhcC--CC--eEeehhhH
Q 011878 158 RMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKS--SA--KTLFVDST 201 (475)
Q Consensus 158 ~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~--~g--~~~~~~~~ 201 (475)
.+.+|+++.. .+..+|+.++... +| .++...+.
T Consensus 156 ~i~~iGiG~~-----------~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 156 RLAVIGIGQG-----------INHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp EEEEEECSSS-----------CCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred EEEEEecCcc-----------cCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 9999999641 2357788888653 22 45544443
No 14
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.16 E-value=6.1e-10 Score=100.76 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=105.9
Q ss_pred ceEEEEEEecCCCcC-CCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecC-CCCH-H
Q 011878 5 REALLLLLDVSPSMH-SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK-VVDG-H 81 (475)
Q Consensus 5 ke~~vflID~s~sM~-~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~-~~~~-~ 81 (475)
.--++|+||.|.||. ..++.+++.+..++.+.-+....++||||.|+++. .+..++. ..+. .
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSIT---------------TIDVPWNVVPEKAH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE---------------EEEECTTCCCCHHH
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcc---------------eEEEecCCCCCHHH
Confidence 346899999999998 46888899999888864333567999999998762 1234552 2233 4
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHh-ccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 011878 82 LVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKY-GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (475)
Q Consensus 82 ~i~~L~~l~~~~~~gd~~daL~va~~~l~~~~-~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~ 160 (475)
..+.|+.+....+..++.+||..|.+++.... +.+....+.+++|||+... . .+...++.+++.||.+.
T Consensus 70 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~-~---------~~~~~~~~~~~~gi~v~ 139 (189)
T 1atz_A 70 LLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSV-D---------SVDAAADAARSNRVTVF 139 (189)
T ss_dssp HHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCS-S---------CCHHHHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCC-c---------hHHHHHHHHHHCCCEEE
Confidence 45567777643334689999999999876421 1122234568899998542 1 24566788899999999
Q ss_pred EEEeccCCCCCCCccccccchHHHHHHhhcCCC
Q 011878 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA 193 (475)
Q Consensus 161 ~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g 193 (475)
+|+++.. .+...|+.++...++
T Consensus 140 ~igvG~~-----------~~~~~L~~iA~~~~~ 161 (189)
T 1atz_A 140 PIGIGDR-----------YDAAQLRILAGPAGD 161 (189)
T ss_dssp EEEESSS-----------SCHHHHHHHTGGGGG
T ss_pred EEEcCCc-----------CCHHHHHHHHCCCcc
Confidence 9999641 134678888877654
No 15
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.14 E-value=7.5e-10 Score=99.25 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=100.4
Q ss_pred ceEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC---C-
Q 011878 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D- 79 (475)
Q Consensus 5 ke~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~---~- 79 (475)
+--++|+||.|.||.. .+..+++.+..++.+.-+....++||||.|+++. .+..++... +
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~---------------~~~~~l~~~~~~~~ 81 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDV---------------HLQWDLQSPNAVDK 81 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE---------------EEEECTTSGGGSCH
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCce---------------EEEEeCCCCCccCH
Confidence 4568999999999974 6788888998888864333567999999999873 124455443 2
Q ss_pred HHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHh-ccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcE
Q 011878 80 GHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKY-GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (475)
Q Consensus 80 ~~~i~~L~~l~~~~~~gd~~daL~va~~~l~~~~-~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~ 158 (475)
....+.|.++....+..++..||..|.+.+.... +.+....+.||||||+.... ...+...++.+++.||.
T Consensus 82 ~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~--------~~~~~~~~~~l~~~gi~ 153 (178)
T 2xgg_A 82 QLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS--------DFRTVRAAKEIRELGGI 153 (178)
T ss_dssp HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH--------HHHHSHHHHHHHHTTCE
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC--------CccHHHHHHHHHHCCCE
Confidence 3455667777633335689999999999865421 12234578899999997641 13477788999999999
Q ss_pred EEEEEecc
Q 011878 159 MKNIVVRA 166 (475)
Q Consensus 159 l~~i~i~~ 166 (475)
+.+|+++.
T Consensus 154 v~~igvG~ 161 (178)
T 2xgg_A 154 VTVLAVGH 161 (178)
T ss_dssp EEEEECC-
T ss_pred EEEEEcCC
Confidence 99999975
No 16
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.12 E-value=5.9e-10 Score=107.60 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=106.3
Q ss_pred eEEEEEEecCCCcCC-Cc-hHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC---C-
Q 011878 6 EALLLLLDVSPSMHS-VL-PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D- 79 (475)
Q Consensus 6 e~~vflID~s~sM~~-~~-~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~---~- 79 (475)
--++|+||.|.||.. .+ +.+++.+..++.+.-....+++||||.|+++. .+..++... +
T Consensus 22 ~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~---------------~~~~~l~~~~~~~~ 86 (281)
T 4hqf_A 22 VDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNA---------------REIIRLHSDASKNK 86 (281)
T ss_dssp EEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTE---------------EEEEEECSSCSSCH
T ss_pred eeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCc---------------eEEEEccccCccCH
Confidence 358999999999985 45 67888888888765555569999999999872 123444443 2
Q ss_pred HHHHHHhhcCCC---CCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcC
Q 011878 80 GHLVQSLKHLPQ---GTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFG 156 (475)
Q Consensus 80 ~~~i~~L~~l~~---~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 156 (475)
...++.|+.+.. ..+.+++.+||..|.+.|... +.+....+.|||||||...- ...+...++.+++.|
T Consensus 87 ~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~-~~r~~~~~~iillTDG~~~d--------~~~~~~~~~~l~~~g 157 (281)
T 4hqf_A 87 EKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDR-INRENANQLVVILTDGIPDS--------IQDSLKESRKLSDRG 157 (281)
T ss_dssp HHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTS-CCCTTCEEEEEEEESSCCSC--------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhc-cCCCCCCEEEEEEecCCCCC--------cHHHHHHHHHHHHCC
Confidence 234445555431 122468999999998887652 22334578899999997641 246778889999999
Q ss_pred cEEEEEEeccCCCCCCCccccccchHHHHHHhhc
Q 011878 157 LRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKK 190 (475)
Q Consensus 157 I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~ 190 (475)
|.+.+|+++.. .+...|+.++..
T Consensus 158 v~i~~igiG~~-----------~~~~~L~~iA~~ 180 (281)
T 4hqf_A 158 VKIAVFGIGQG-----------INVAFNRFLVGC 180 (281)
T ss_dssp CEEEEEEESSS-----------CCHHHHHHHTTS
T ss_pred CEEEEEeCCCc-----------cCHHHHHhhhCC
Confidence 99999999641 235778888865
No 17
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.10 E-value=2e-09 Score=98.28 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=110.7
Q ss_pred ceEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC-C-HHH
Q 011878 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHL 82 (475)
Q Consensus 5 ke~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~-~-~~~ 82 (475)
.--++|+||.|.||. .++.+++.+..++++.-+..+.++||||.|+++. .+..++... + ...
T Consensus 6 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~---------------~~~~~l~~~~~~~~~ 69 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNP---------------RVVFNLNTYKTKEEM 69 (200)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSE---------------EEEECTTTCSSHHHH
T ss_pred cccEEEEEECCCCcc-cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCc---------------eEEEeCCCcCCHHHH
Confidence 346899999999999 5888888888888865444579999999999762 124556532 2 245
Q ss_pred HHHhhcCCCCCC-CCChhHHHHHHHHHHHH-HhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 011878 83 VQSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (475)
Q Consensus 83 i~~L~~l~~~~~-~gd~~daL~va~~~l~~-~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~ 160 (475)
++.|+++....+ ..++.+||..|.+.+.. ..+.+....|.|+||||+...- ...+...++.+++.||.+.
T Consensus 70 ~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~--------~~~~~~~~~~~~~~gi~i~ 141 (200)
T 1v7p_C 70 IVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHD--------GSMLKAVIDQCNHDNILRF 141 (200)
T ss_dssp HHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSC--------GGGHHHHHHHHHHTTEEEE
T ss_pred HHHHHhhhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCC--------cccHHHHHHHHHHCCCEEE
Confidence 667777764322 46899999999986432 1122234578899999997742 1346677888999999999
Q ss_pred EEEeccCCC-CCCCccccccchHHHHHHhhcCCCeE
Q 011878 161 NIVVRASLS-GEPHMRVIIENDNLLNIFSKKSSAKT 195 (475)
Q Consensus 161 ~i~i~~~~~-~~~~~~~~~~n~~~l~~~~~~~~g~~ 195 (475)
+|+++.... ++... ......|+.+|+..+|.+
T Consensus 142 ~igvg~~~~~~~~~~---~~~~~~L~~iA~~~~g~~ 174 (200)
T 1v7p_C 142 GIAVLGYLNRNALDT---KNLIKEIKAIASIPTERY 174 (200)
T ss_dssp EEEECHHHHHTTCCC---HHHHHHHHHHSCSSHHHH
T ss_pred EEEecccccccccch---hhHHHHHHHHhCCccHhc
Confidence 999942100 01110 011345888888776653
No 18
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.10 E-value=1.7e-09 Score=113.31 Aligned_cols=167 Identities=19% Similarity=0.172 Sum_probs=114.8
Q ss_pred ceEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC---C-
Q 011878 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D- 79 (475)
Q Consensus 5 ke~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~---~- 79 (475)
+--++|+||.|.||.. .++.+++.+..++++.-..+++|+||||.|+++. .+..++..+ +
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~ 73 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEP---------------KVLMSVLNDNSRDM 73 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSE---------------EEEECTTSGGGGCH
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCC---------------ceeEeccCCCCCCH
Confidence 4568999999999986 5888999999999876666899999999998762 124555432 2
Q ss_pred HHHHHHhhcCCCC----CCCCChhHHHHHHHHHHHHHhccC-------cceeeEEEEEeCCCCCCCCCCCCCchhhHHHH
Q 011878 80 GHLVQSLKHLPQG----TCAGDFLDAIVVGVDMLIKKYGET-------YKGKKHLCLITDALCPLKDPDVGTKEDQVSTI 148 (475)
Q Consensus 80 ~~~i~~L~~l~~~----~~~gd~~daL~va~~~l~~~~~~~-------~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~ 148 (475)
...++.|+++... .+..++.+||..|.+++....... ....+.|||||||....+. ....+...
T Consensus 74 ~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-----~~~~~~~~ 148 (509)
T 2odp_A 74 TEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-----SPKTAVDH 148 (509)
T ss_dssp HHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-----CTHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC-----ChhHHHHH
Confidence 3455667777654 234689999999999885532111 1245789999999876432 11222222
Q ss_pred HHH-Hh-----hcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCe--EeehhhH
Q 011878 149 ARQ-MV-----AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDST 201 (475)
Q Consensus 149 ~~~-l~-----~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~--~~~~~~~ 201 (475)
++. +. +.||.+.+|+++.. ..+...|+.+|+..+|. ++.+++.
T Consensus 149 ~~~~~~~~~~~~~~i~i~~iGvG~~----------~~~~~~L~~iA~~~~G~~~~~~~~~~ 199 (509)
T 2odp_A 149 IREILNINQKRNDYLDIYAIGVGKL----------DVDWRELNELGSKKDGERHAFILQDT 199 (509)
T ss_dssp HHHHTTCCSTTGGGEEEEEEEESSS----------CCCHHHHHHHSCCCTTCCCEEEESSH
T ss_pred HHHHhhccccccCceEEEEEEcCCC----------cccHHHHHhhccCCCCceeeEEecCH
Confidence 232 21 78999999999641 12367899999988887 6655544
No 19
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.07 E-value=5.1e-10 Score=101.65 Aligned_cols=166 Identities=16% Similarity=0.092 Sum_probs=109.4
Q ss_pred ceEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC--CHH
Q 011878 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV--DGH 81 (475)
Q Consensus 5 ke~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~--~~~ 81 (475)
+--++|+||.|.||.. .++.+++.+..++.+. ..+.++||||.|++... +..++... ...
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l--~~~~~~v~vv~f~~~~~---------------~~~~l~~~~~~~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQL--KKSKTLFSLMQYSEEFR---------------IHFTFKEFQNNPN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH--CCTTEEEEEEEESSSEE---------------EEECHHHHHHSCC
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEEecCCce---------------EEEecCCcCCHHH
Confidence 4568999999999987 6788888888888754 36789999999987621 23343321 123
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHH-hccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 011878 82 LVQSLKHLPQGTCAGDFLDAIVVGVDMLIKK-YGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (475)
Q Consensus 82 ~i~~L~~l~~~~~~gd~~daL~va~~~l~~~-~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~ 160 (475)
..+.|+++....+..++.+||..|.+.+... .+.+....|.|+|||||... +. . ..+...++.+++.||.+.
T Consensus 68 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~d---~---~~~~~~~~~~~~~gi~v~ 140 (194)
T 1mf7_A 68 PRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-GD---P---LGYEDVIPEADREGVIRY 140 (194)
T ss_dssp HHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-SC---S---SCGGGTHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-CC---c---hhhHHHHHHHHHCCCEEE
Confidence 4566777754233458999999998754321 12222356789999999764 11 1 123444677899999999
Q ss_pred EEEeccCCCCCCCccccccchHHHHHHhhcC-CCeEeehhhH
Q 011878 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKS-SAKTLFVDST 201 (475)
Q Consensus 161 ~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~-~g~~~~~~~~ 201 (475)
+|+++... . ...+...|+.++... +|.++...+.
T Consensus 141 ~igvG~~~----~---~~~~~~~L~~iA~~~~~~~~~~~~~~ 175 (194)
T 1mf7_A 141 VIGVGDAF----R---SEKSRQELNTIASKPPRDHVFQVNNF 175 (194)
T ss_dssp EEEESGGG----C---SHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred EEEecccc----c---ccccHHHHHHHhCCCCcccEEEeCCH
Confidence 99996411 0 012357788888764 3566655544
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.98 E-value=2.2e-11 Score=110.26 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=108.0
Q ss_pred ceEEEEEEecCCCcC-CCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCCHHHH
Q 011878 5 REALLLLLDVSPSMH-SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLV 83 (475)
Q Consensus 5 ke~~vflID~s~sM~-~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~~~~i 83 (475)
.-.++|+||+|+||. .++..+++++..++.+. ..+.|+||||.|+++.... +.|+..-.....
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~--------------~~~~~~~~~~~~ 68 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQV--------------LLQPSRSLTQTK 68 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCB--------------CTTTCSCHHHHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceE--------------ecCCCCCHHHHH
Confidence 456899999999994 57888999999888653 4799999999999753221 233433223345
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCC---CCchhhHHHHHHHHhhcCcEEE
Q 011878 84 QSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDV---GTKEDQVSTIARQMVAFGLRMK 160 (475)
Q Consensus 84 ~~L~~l~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~---~~~~~~~~~~~~~l~~~~I~l~ 160 (475)
..|..+..+. .+++.+||..|.+++.+. ......+.||||||+....+.... ......+..+++.+++.||.+.
T Consensus 69 ~~i~~l~~~g-~T~~~~al~~a~~~l~~~--~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~ 145 (189)
T 2x31_A 69 RQLQGLPGGG-GTPLASGMEMAMVTAKQA--RSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAV 145 (189)
T ss_dssp HHHHHCCCCB-CCCCHHHHHHHHHHHHTC--TTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCT
T ss_pred HHHhcCCCCC-CCCHHHHHHHHHHHHHhc--cCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEE
Confidence 5677776543 458999999999998652 122357899999999876532000 0001122334556778888888
Q ss_pred EEEeccCCCCCCCccccccchHHHHHHhhcCCCeEeehhhH
Q 011878 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDST 201 (475)
Q Consensus 161 ~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~~~~~~ 201 (475)
+|+++.. +...|+.++..++|.++.+++.
T Consensus 146 ~ig~g~~------------~~~~L~~iA~~~~G~~~~~~~~ 174 (189)
T 2x31_A 146 IIDTAMR------------PNPALVDLARTMDAHYIALPRA 174 (189)
T ss_dssp HHHHHHS------------SCSSSCSTTTEEEESSTTTHHH
T ss_pred EEecCCC------------CHHHHHHHHHhcCCeEEECCCc
Confidence 8887531 1345666777777877665543
No 21
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.97 E-value=1.1e-08 Score=105.40 Aligned_cols=156 Identities=10% Similarity=0.020 Sum_probs=108.4
Q ss_pred eEEEEEEecCCCcC---CCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecC----CC
Q 011878 6 EALLLLLDVSPSMH---SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK----VV 78 (475)
Q Consensus 6 e~~vflID~s~sM~---~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~----~~ 78 (475)
-.++|+||+|+||. .++..+++++..++.+ ..++|++|||.|++... ++.|++ ..
T Consensus 78 ~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~a~---------------~~~p~t~~l~~~ 139 (464)
T 4fx5_A 78 NVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEGAR---------------VVYPTGGQLLRA 139 (464)
T ss_dssp EEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSSEE---------------EEESSSSSCEEC
T ss_pred ceEEEEEEcCcccCCCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCceE---------------EEecCCcccccC
Confidence 45899999999997 3578888888888874 35899999999987731 233432 12
Q ss_pred CH----HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhh
Q 011878 79 DG----HLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVA 154 (475)
Q Consensus 79 ~~----~~i~~L~~l~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~ 154 (475)
+. ...+.|+.+..+. ..++.+||..|.++|.. .....+.|||||||...... ...+....+ ...
T Consensus 140 ~~~~~~~l~~~I~~L~~~G-gT~l~~aL~~A~~~l~~----~~~~~~~IILLTDG~~~~~~------~~~l~~~~~-a~~ 207 (464)
T 4fx5_A 140 DYQSRAAAKEAVGRLHANG-GTAMGRWLAQAGRIFDT----APSAIKHAILLTDGKDESET------PADLARAIQ-SSI 207 (464)
T ss_dssp SHHHHHHHHHHHHTCCCCS-CCCHHHHHHHHHHHHTT----CTTSEEEEEEEESSCCTTSC------HHHHHHHHH-HHT
T ss_pred CHHHHHHHHHHHHcCCCCC-CCcHHHHHHHHHHHHhc----CCCCCCEEEEEcCCCCCCCC------hHHHHHHHH-Hhc
Confidence 22 2345566676533 35899999999998754 22456899999999865331 123333222 336
Q ss_pred cCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEeehhhHH
Q 011878 155 FGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTT 202 (475)
Q Consensus 155 ~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~~~~~~~ 202 (475)
.+|.+.+||++.. .+...|+.++..++|.++.+.+..
T Consensus 208 ~~i~i~tiGiG~~-----------~d~~~L~~IA~~tgG~~~~v~d~~ 244 (464)
T 4fx5_A 208 GNFTADCRGIGED-----------WEPKELRKIADALLGTVGIIRDPA 244 (464)
T ss_dssp TTCEEEEEEESSS-----------SCHHHHHHHHHHTTCCEEEESSGG
T ss_pred CCCeEEEEEeCCc-----------cCHHHHHHHHHhCCCEEEEcCCHH
Confidence 7899999999641 235789999999999987665543
No 22
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.96 E-value=6e-09 Score=114.07 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=112.8
Q ss_pred EEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC---C-HH
Q 011878 7 ALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D-GH 81 (475)
Q Consensus 7 ~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~---~-~~ 81 (475)
-++|+||.|.||.. .+..+++.+..++.+.-....+|+||||.|+++. .+..++... + ..
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~~~ 309 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNADW 309 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCHHH
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCC---------------ceeEeecccCCcCHHH
Confidence 38999999999965 4888899999999887666788999999998762 234555542 2 23
Q ss_pred HHHHhhcCCC----CCCCCChhHHHHHHHHHHHHHh-cc---CcceeeEEEEEeCCCCCCCCCCCCCchhhHHHH-----
Q 011878 82 LVQSLKHLPQ----GTCAGDFLDAIVVGVDMLIKKY-GE---TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTI----- 148 (475)
Q Consensus 82 ~i~~L~~l~~----~~~~gd~~daL~va~~~l~~~~-~~---~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~----- 148 (475)
.++.|+++.. ..+.+.+.+||..|.++|.... .. .....|.||||||+....+. .....+..+
T Consensus 310 ~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~----~p~~~~~~i~~~~~ 385 (741)
T 3hrz_D 310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG----DPITVIDEIRDLLY 385 (741)
T ss_dssp HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS----CTHHHHHHHHHHTT
T ss_pred HHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC----CchHHHHHHHHHhh
Confidence 5667877762 2334689999999999873210 11 12356779999999876553 122222222
Q ss_pred ----HHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCe--EeehhhH
Q 011878 149 ----ARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDST 201 (475)
Q Consensus 149 ----~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~--~~~~~~~ 201 (475)
++.+++.||.+.+|+++.. .++..|+.+++..+|. ++..++.
T Consensus 386 ~~~~a~~~~~~gi~i~~igvG~~-----------~~~~~L~~ia~~~~g~~~~~~~~~~ 433 (741)
T 3hrz_D 386 IGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVFKVKDM 433 (741)
T ss_dssp CSSCTTCCCGGGEEEEEEECSSS-----------CCHHHHHHHSCCCTTCCCEECBSSH
T ss_pred cccccccccccCeeEEEEeCCCc-----------CCHHHHHHHhcCCCCcceEEEeCCH
Confidence 2356788999999999631 2356788899888774 6654443
No 23
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.95 E-value=8e-09 Score=107.67 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=109.4
Q ss_pred EEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC----CHH
Q 011878 7 ALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV----DGH 81 (475)
Q Consensus 7 ~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~----~~~ 81 (475)
-++|+||.|.||.. +++.+++.+..++.+.-....+++||||.|+++. .+..++..+ ...
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~~~ 67 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNADW 67 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCHHH
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCc---------------eEeeccccccccCHHH
Confidence 37999999999975 6888899999998876556678999999999662 122333222 234
Q ss_pred HHHHhhcCCCC----CCCCChhHHHHHHHHHHHHHhc----cCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHH-
Q 011878 82 LVQSLKHLPQG----TCAGDFLDAIVVGVDMLIKKYG----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQM- 152 (475)
Q Consensus 82 ~i~~L~~l~~~----~~~gd~~daL~va~~~l~~~~~----~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l- 152 (475)
..+.|+++... .+..++.+||..|.+++..... ......+.||||||+....+. ....+...++.+
T Consensus 68 ~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~-----~~~~~~~~~~~~~ 142 (497)
T 1rrk_A 68 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-----DPITVIDEIRDLL 142 (497)
T ss_dssp HHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS-----CTHHHHHHHHHHT
T ss_pred HHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC-----ChhHHHHHHHHHh
Confidence 55667777631 2346899999999998732100 112356789999999876432 112222222222
Q ss_pred ---------hhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCC--eEeehhhH
Q 011878 153 ---------VAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA--KTLFVDST 201 (475)
Q Consensus 153 ---------~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g--~~~~~~~~ 201 (475)
++.||.+.+|+++.. .+...|+.+|...+| .++..++.
T Consensus 143 ~~~~~~~~~~~~~i~v~~igvG~~-----------~~~~~L~~iA~~~~g~~~~~~~~~~ 191 (497)
T 1rrk_A 143 YIGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVCKVKDM 191 (497)
T ss_dssp TCSSCC-CCCGGGEEEEEEECSSS-----------CCHHHHHHHSCCCTTCCCEEETTCH
T ss_pred hhhcccccchhcCeeEEEecCCCc-----------cCHHHHHHHhcCCCCcceEEEeCCH
Confidence 344999999999641 235788999998888 77766654
No 24
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.88 E-value=6.7e-09 Score=94.77 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred EEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC-C-HHHH
Q 011878 7 ALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHLV 83 (475)
Q Consensus 7 ~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~-~-~~~i 83 (475)
-++|+||.|.||.. .++.+++.+..++++--+..++++||||.|+++. .+..++... + ....
T Consensus 23 DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~~ 87 (199)
T 3zqk_A 23 DVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMV---------------TVEYPFSEAQSKGDIL 87 (199)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSE---------------EEEECTTSCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcc---------------cEEEecCCcCCHHHHH
Confidence 48999999999985 5888899999999877666789999999999873 123455432 2 2456
Q ss_pred HHhhcCCCCCC-CCChhHHHHHHHHHHHH-HhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 011878 84 QSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (475)
Q Consensus 84 ~~L~~l~~~~~-~gd~~daL~va~~~l~~-~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~ 161 (475)
+.|+++....+ .+.+.+||..|.+.+.. ..+.+....|.||||||+.+.-.. . .+ ..||.+..
T Consensus 88 ~~i~~l~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v-----~--~~--------~~~v~v~~ 152 (199)
T 3zqk_A 88 QRLREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEI-----K--RL--------PGDIQVVP 152 (199)
T ss_dssp HHHHHCCCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCC-----C--CC--------CTTEEEEE
T ss_pred HHHHhCcCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHH-----H--HH--------hCCCEEEE
Confidence 67777764333 36899999999875432 112233456789999999753211 1 11 26899999
Q ss_pred EEeccCCCCCCCccccccchHHHHHHhh
Q 011878 162 IVVRASLSGEPHMRVIIENDNLLNIFSK 189 (475)
Q Consensus 162 i~i~~~~~~~~~~~~~~~n~~~l~~~~~ 189 (475)
||++.. .+...|+.++.
T Consensus 153 iGiG~~-----------~~~~~L~~iA~ 169 (199)
T 3zqk_A 153 IGVGPN-----------ANVQELERIGW 169 (199)
T ss_dssp EEESTT-----------CCHHHHHHHHT
T ss_pred EEcCCC-----------CCHHHHHHHhC
Confidence 999631 23577888887
No 25
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.65 E-value=1.2e-07 Score=84.83 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=97.6
Q ss_pred eEEEEEEecCCCcCC-CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCCH--HH
Q 011878 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDG--HL 82 (475)
Q Consensus 6 e~~vflID~s~sM~~-~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~~--~~ 82 (475)
--++|+||.|.||.. .++.+++.+..++++. ....++||||.|+++. .+..++....- +.
T Consensus 3 ~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l--~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 65 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKC--SNTSYQFAAVQFSTSY---------------KTEFDFSDYVKRKDP 65 (179)
T ss_dssp EEEEEEEECBTTCCHHHHHHHHHHHHHHHHHT--TTSSEEEEEEEESSSE---------------EEEECHHHHHHHCCH
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh--CCCCeEEEEEEECCce---------------eEEEcCcccCCHHHH
Confidence 358999999999986 5788888898888863 5566899999999762 12344432210 12
Q ss_pred HHHhhcCCCCCCCCChhHHHHHHHHH-HHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 011878 83 VQSLKHLPQGTCAGDFLDAIVVGVDM-LIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (475)
Q Consensus 83 i~~L~~l~~~~~~gd~~daL~va~~~-l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~ 161 (475)
...++.+..-.+.+.+..||..|.+. +....+.+....|.|+|||||.+..+. . . .+..||.+..
T Consensus 66 ~~~~~~i~~~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~-----~--~-------~~~~~i~i~~ 131 (179)
T 1mjn_A 66 DALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSG-----N--I-------DAAKDIIRYI 131 (179)
T ss_dssp HHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCS-----C--C-------GGGTTSEEEE
T ss_pred HHHHHhcccCCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCc-----c--h-------HHHCCCEEEE
Confidence 23444454322345889999999864 332222233456789999999865321 1 0 1467999999
Q ss_pred EEeccCCCCCCCccccccchHHHHHHhhcCCCe-Eeehhh
Q 011878 162 IVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK-TLFVDS 200 (475)
Q Consensus 162 i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~-~~~~~~ 200 (475)
|+++... .. ..+...|+.++...+|. ++..++
T Consensus 132 igvG~~~----~~---~~~~~~L~~iA~~~~~~~~~~~~~ 164 (179)
T 1mjn_A 132 IGIGKHF----QT---KESQETLHKFASKPASEFVKILDT 164 (179)
T ss_dssp EEESGGG----CS---HHHHHTTGGGSCSCHHHHEEEESS
T ss_pred EEccccc----cc---cccHHHHHHHhCCccHhcEEEeCC
Confidence 9996421 00 01235566777665543 444444
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.60 E-value=7.5e-08 Score=108.88 Aligned_cols=160 Identities=18% Similarity=0.114 Sum_probs=107.6
Q ss_pred EEEEEEecCCCcCCC-chHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCC--CCHHHH
Q 011878 7 ALLLLLDVSPSMHSV-LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKV--VDGHLV 83 (475)
Q Consensus 7 ~~vflID~s~sM~~~-~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~--~~~~~i 83 (475)
=++|+||.|.||... +..+++.+..++++- ...+++||||.|+++. .+..++.. -..+..
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~--~~~~~rVglV~Fs~~~---------------~~~~~lt~~~~~~~l~ 194 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQF--QRPSTQFSLMQFSNKF---------------QTHFTFEEFRRSSNPL 194 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSS--CSSSEEEEEEEESSSE---------------EEEECSHHHHSCSCGG
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhc--cccccEEEEEEECCeE---------------EEEecCcccCCHHHHH
Confidence 489999999999874 788889998888753 3567999999998862 12334432 111234
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHH-HhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEE
Q 011878 84 QSLKHLPQGTCAGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 162 (475)
Q Consensus 84 ~~L~~l~~~~~~gd~~daL~va~~~l~~-~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i 162 (475)
+.++.+....+...+.+||..|.+.+.. ..+.+....|.|+|||||....+ ...+...++.+++.||.+..|
T Consensus 195 ~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d-------~~~~~~~a~~~r~~GI~i~aI 267 (1095)
T 3k6s_A 195 SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD-------SLDYKDVIPMADAAGIIRYAI 267 (1095)
T ss_dssp GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSC-------SSCHHHHHHHHHHHCEEECCE
T ss_pred HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCC-------chhHHHHHHHHHHCCCEEEEE
Confidence 4555554333346789999999875542 12233356788999999987522 134677788899999999999
Q ss_pred EeccCCCCCCCccccccchHHHHHHhhcCCC-eEee
Q 011878 163 VVRASLSGEPHMRVIIENDNLLNIFSKKSSA-KTLF 197 (475)
Q Consensus 163 ~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g-~~~~ 197 (475)
+++..+.. ..+...|+.+|+..+| .++.
T Consensus 268 GVG~~~~~-------~~d~~eL~~IAs~p~g~~vf~ 296 (1095)
T 3k6s_A 268 GVGLAFQN-------RNSWKELNDIASKPSQEHIFK 296 (1095)
T ss_dssp EBSSGGGS-------TTSSHHHHTTSCSSTTTSCCC
T ss_pred eccccccc-------ccCHHHHHHHHcCCCCceEEE
Confidence 99642210 1235678888876654 3443
No 27
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.29 E-value=4e-06 Score=77.51 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=73.8
Q ss_pred ceEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCCHHHHH
Q 011878 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQ 84 (475)
Q Consensus 5 ke~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~~~~i~ 84 (475)
+--++||||+|+||..++..+++.+..++...-..+.+|+||||.|+++...- ..+++|++... ...+
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~-----------~~ll~pfT~~~-~~~~ 201 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEA-----------TRLVQPFSSEV-NVAA 201 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCS-----------CEEEEEEESSC-CHHH
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccc-----------eeecCCCCChH-HHHH
Confidence 34689999999999999999999999999876556679999999999874211 11234776655 5556
Q ss_pred HhhcCCCCCCCCChhHHHHHHHHHHHHHh
Q 011878 85 SLKHLPQGTCAGDFLDAIVVGVDMLIKKY 113 (475)
Q Consensus 85 ~L~~l~~~~~~gd~~daL~va~~~l~~~~ 113 (475)
.+..|..++ ..++.+||..|+++|.++.
T Consensus 202 ~l~~L~agG-~Tplg~AL~~A~~~~~~~~ 229 (242)
T 3rag_A 202 LEAELVARG-GTPTGPAIDHAADLLLSHA 229 (242)
T ss_dssp HHHHCCCCS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCC-CCcHHHHHHHHHHHHHHHh
Confidence 777887643 5689999999999987753
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.08 E-value=2.4e-05 Score=81.89 Aligned_cols=157 Identities=12% Similarity=0.068 Sum_probs=86.5
Q ss_pred ceEEEEEEecCCCcCC-Cc-----hHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC
Q 011878 5 REALLLLLDVSPSMHS-VL-----PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (475)
Q Consensus 5 ke~~vflID~s~sM~~-~~-----~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~ 78 (475)
..-++++||+|+||.. .. ..+.+++..+. -+..+.+|.+|||+|++.-.. .++..
T Consensus 362 ~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r~~d~v~lv~Fs~~~~~----------------~~~~~- 422 (535)
T 2nvo_A 362 NTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALRTEPDALTMGFAEQFRP----------------LGITP- 422 (535)
T ss_dssp CSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHHHSSEEEEEEEBSSEEE----------------CCCCT-
T ss_pred CceEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcCcCCceEEEEECCcceE----------------cCCCc-
Confidence 3467888999999976 32 12344333222 223567899999999873111 12221
Q ss_pred CHHHHHHhhcCCCC-CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh---h
Q 011878 79 DGHLVQSLKHLPQG-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV---A 154 (475)
Q Consensus 79 ~~~~i~~L~~l~~~-~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~---~ 154 (475)
.....+.|+.+... .+.+++..+|..+ .+. +....+||||||+++..+. . .....++..+ .
T Consensus 423 ~~~l~~~l~~l~~~~~ggTdi~~~l~~a----~~~----~~~~~~vIliTD~~~~~g~----~---~~~~al~~~r~~~~ 487 (535)
T 2nvo_A 423 RDTLESAMQKAQSVSFGGTDCAQPILWA----AQE----RLDVDTFVVYTDNETWAGQ----V---HPTVALDQYAQKMG 487 (535)
T ss_dssp TCCHHHHHHHTCCSSBCCCCTTHHHHHH----HHT----TCCCSEEEEEESSCCCCCS----S---CHHHHHHHHHHHHS
T ss_pred chhHHHHHHHHhhCCCCCccHHHHHHHH----HHh----cCCCCEEEEEeCCCccCCC----C---CHHHHHHHHHHhhC
Confidence 11223444444321 2345777776433 321 2335789999999887653 1 1223334444 3
Q ss_pred cCcEEEEEEeccC----C-CCCCC-ccccccchHHHHHHhhcCCCeE
Q 011878 155 FGLRMKNIVVRAS----L-SGEPH-MRVIIENDNLLNIFSKKSSAKT 195 (475)
Q Consensus 155 ~~I~l~~i~i~~~----~-~~~~~-~~~~~~n~~~l~~~~~~~~g~~ 195 (475)
.++++.+++++.. . +++.. ..+...++..++.++.-++|.+
T Consensus 488 ~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 488 RAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp CCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCc
Confidence 4889999998641 1 01100 1122345788888888777764
No 29
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.07 E-value=3e-05 Score=81.39 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=83.7
Q ss_pred eEEEEEEecCCCcCCC-----chHHHHH--HHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCC
Q 011878 6 EALLLLLDVSPSMHSV-----LPDVEKL--CSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (475)
Q Consensus 6 e~~vflID~s~sM~~~-----~~~a~~~--~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~ 78 (475)
--++|+||+|+||... +.. +++ +..++. .+++|+||||.|++.-. ..+++.-
T Consensus 369 ~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~~~----------------~~~~t~~ 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDEML----------------PCPITVN 427 (538)
T ss_dssp CCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSSEE----------------CCSCCTT
T ss_pred ceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHH----hccCCceEEEEECCCce----------------EcCCCCc
Confidence 4688999999999752 333 333 222222 46789999999986311 1122211
Q ss_pred -C-HHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh---
Q 011878 79 -D-GHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV--- 153 (475)
Q Consensus 79 -~-~~~i~~L~~l~~~~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~--- 153 (475)
+ ...++.|..+.. +.+++.++|..|.+. . ...+.||||||+.+..+. ......++.++
T Consensus 428 ~~l~~~l~~l~~~~~--GgT~i~~aL~~a~~~-----~---~~~~~iIliTDg~~~~g~-------~~~~~~l~~~~~~~ 490 (538)
T 1yvr_A 428 MLLHEVVEKMSDITM--GSTDCALPMLWAQKT-----N---TAADIFIVFTDCETNVED-------VHPATALKQYREKM 490 (538)
T ss_dssp SCHHHHHHHHTTCCC--SCCCTTHHHHHHHHT-----T---CCCSEEEEEECCCCCSSS-------CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCC--CCCcHHHHHHHHHhc-----c---CCCCEEEEEcCCCCCCCC-------CCHHHHHHHHHHHh
Confidence 1 233555554422 245788888877654 1 234789999999876532 11223333333
Q ss_pred hcCcEEEEEEeccC----C-CCCC-CccccccchHHHHHHhhcCCCe
Q 011878 154 AFGLRMKNIVVRAS----L-SGEP-HMRVIIENDNLLNIFSKKSSAK 194 (475)
Q Consensus 154 ~~~I~l~~i~i~~~----~-~~~~-~~~~~~~n~~~l~~~~~~~~g~ 194 (475)
...|.+.+|++++. . ++.. ...+...++..++.++..++|.
T Consensus 491 ~~~v~l~~igig~~~~~~~~~~~~~~~~i~g~~e~~l~~Ia~~~~G~ 537 (538)
T 1yvr_A 491 GIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRNFTLDL 537 (538)
T ss_dssp TCCCEEEEEECSSSSEESSCTTCTTEEEEETTCTTHHHHHHHHHTTC
T ss_pred CCCcEEEEEEecCCCCcccCCCCCCceeeccCCHHHHHHHHHHhCCC
Confidence 23566688888641 1 1111 0112223567777777666664
No 30
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.99 E-value=3.8e-05 Score=84.65 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=73.7
Q ss_pred EEEEEEecCCCcCCC-------chHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCcc-------ccccCC--------
Q 011878 7 ALLLLLDVSPSMHSV-------LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENE-------LTKEVG-------- 64 (475)
Q Consensus 7 ~~vflID~s~sM~~~-------~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~-------~~~~~~-------- 64 (475)
-++|+||+|.||... +..+++++..++. .+..+++|+||||.|+++..... ..+..|
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLID-KITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 489999999999864 4556778888884 44446899999999998643210 000000
Q ss_pred -Cccc-EEE-------EeecCCCCHHHHHHhhc-CC---C---C------CCCCChhHHHHHHHHHHHHHhccCcceeeE
Q 011878 65 -GYEH-VKV-------LQDIKVVDGHLVQSLKH-LP---Q---G------TCAGDFLDAIVVGVDMLIKKYGETYKGKKH 122 (475)
Q Consensus 65 -~y~~-i~~-------~~~l~~~~~~~i~~L~~-l~---~---~------~~~gd~~daL~va~~~l~~~~~~~~~~~kr 122 (475)
.|.. .+. ..||. .+...+..|++ +. . + .+...+.+||..|+++|.+.. +....|.
T Consensus 305 w~~~~t~~t~~~~~~~~lpLT-~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~--~~~~~kv 381 (893)
T 2ww8_A 305 WNYDQTSFTTNTKDYSYLKLT-NDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA--RQNSQKV 381 (893)
T ss_dssp SCTTCCEEEEECCBCCEEEEE-CCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS--CSSSEEE
T ss_pred ccccccccccccccccccccc-CCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhc--ccCCCeE
Confidence 0111 010 11332 23444444433 21 1 1 223578999999999987532 2245788
Q ss_pred EEEEeCCCCCC
Q 011878 123 LCLITDALCPL 133 (475)
Q Consensus 123 I~l~Td~~~p~ 133 (475)
|||+|||....
T Consensus 382 IILLTDG~pt~ 392 (893)
T 2ww8_A 382 IFHITDGVPTM 392 (893)
T ss_dssp EEEEESSCCSE
T ss_pred EEEEcCCCCCc
Confidence 99999997643
No 31
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.38 E-value=0.0017 Score=58.89 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=74.5
Q ss_pred EEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEeecCCCCHHHHHHhh
Q 011878 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLK 87 (475)
Q Consensus 8 ~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~~~~~~~i~~L~ 87 (475)
++||+|+|.||...++..++.+..++++---..++=++|++.|.-. .|+|+ .+++.-.....+.|.
T Consensus 6 l~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk-----------~~~~~---l~lT~d~~~F~~~v~ 71 (212)
T 2iue_A 6 LYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM-----------TFQHI---LKLTADSSQFQRELR 71 (212)
T ss_dssp EEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS-----------CEEEE---EEEESCHHHHHHHHH
T ss_pred EEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC-----------cceec---CCcCCCHHHHHHHHh
Confidence 7899999999999998888888877764432357889999999644 46543 667776677888888
Q ss_pred cCCCCC---CCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCC
Q 011878 88 HLPQGT---CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALC 131 (475)
Q Consensus 88 ~l~~~~---~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~ 131 (475)
++..++ ...+-.+||+.|+....+ .+=++ ..|-|||+||+..
T Consensus 72 ~~~vsg~~D~PE~g~dal~qa~~c~~~-i~Wr~-a~rllvl~TDa~~ 116 (212)
T 2iue_A 72 KQLVSGKLATPKGQLDAVVQVAICLGE-IGWRN-GTRFLVLVTDNDF 116 (212)
T ss_dssp TCCCCCCSSSSBCHHHHHHHHHHCHHH-HTCCS-SEEEEEEECSSCB
T ss_pred hccccCCCCCCchHHHHHHHHHHhhhh-cccCC-ccEEEEEECcCCc
Confidence 864432 233568888877643221 12233 5666778888743
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.63 E-value=0.0048 Score=56.93 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=49.7
Q ss_pred ceeeEEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEee
Q 011878 118 KGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLF 197 (475)
Q Consensus 118 ~~~krI~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~~ 197 (475)
...|.|+|+|||.+.++. +....|+.+++.||.+++||++.. +... ...+..|+.+|..++|.|+.
T Consensus 8 ~~~k~iillTDG~~~~g~--------~p~~aa~~a~~~gi~v~tIGig~~--~~~~----~~~~~~L~~IA~~tGG~yf~ 73 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGP--------DPVEAARRAHRHGIVVNVIGIVGR--GDAG----EQGYQEAHSIADAGGGMCRI 73 (242)
T ss_dssp CCEEEEEEEESSCCCSSS--------CHHHHHHHHHHTTCEEEEEEECCS--SSCT----TCCCHHHHHHHHHTTSCEEE
T ss_pred CCccEEEEEccCCCCCCC--------CHHHHHHHHHHCCCEEEEEEecCC--cccc----chhHHHHHHHHHhcCCeEEE
Confidence 347999999999987753 355677888999999999999531 1100 12357799999999999875
Q ss_pred h
Q 011878 198 V 198 (475)
Q Consensus 198 ~ 198 (475)
.
T Consensus 74 a 74 (242)
T 3rag_A 74 V 74 (242)
T ss_dssp E
T ss_pred e
Confidence 3
No 33
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.58 E-value=0.017 Score=61.83 Aligned_cols=152 Identities=19% Similarity=0.192 Sum_probs=90.6
Q ss_pred EEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCc------------CccccccC----C--CcccE
Q 011878 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET------------ENELTKEV----G--GYEHV 69 (475)
Q Consensus 8 ~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t------------~n~~~~~~----~--~y~~i 69 (475)
++||+|+|.||...++..++.+..|+++.--..++=++|+..|.-... +||-.... . .|+|+
T Consensus 114 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~ 193 (690)
T 3fcs_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHV 193 (690)
T ss_dssp EEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEE
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceee
Confidence 689999999999888777666666655432245788999999976332 22211000 1 45565
Q ss_pred EEEeecCCCCHHHHHHhhcCCCCC---CCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCC---------C
Q 011878 70 KVLQDIKVVDGHLVQSLKHLPQGT---CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDP---------D 137 (475)
Q Consensus 70 ~~~~~l~~~~~~~i~~L~~l~~~~---~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~---------~ 137 (475)
.+|+.-.....+.|.++..+. ..-.-+|||..|+--- ++.+=++...|-|||+||+..-.+.. .
T Consensus 194 ---l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~-~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pn 269 (690)
T 3fcs_B 194 ---LTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCD-EKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPN 269 (690)
T ss_dssp ---EEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCH-HHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCC
T ss_pred ---cccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcc-cccCCCCCceEEEEEECCCccccCCCccccceecCC
Confidence 577777777788888865431 1123577877775221 11222334567788889886422110 0
Q ss_pred CC---------------CchhhHHHHHHHHhhcCcEEEEEE
Q 011878 138 VG---------------TKEDQVSTIARQMVAFGLRMKNIV 163 (475)
Q Consensus 138 ~~---------------~~~~~~~~~~~~l~~~~I~l~~i~ 163 (475)
++ .+.-.+.++++.|.+.+|.+.+..
T Consensus 270 d~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifav 310 (690)
T 3fcs_B 270 DGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAV 310 (690)
T ss_dssp CCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEE
Confidence 00 000137888999999999654443
No 34
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=96.41 E-value=0.17 Score=54.96 Aligned_cols=212 Identities=15% Similarity=0.124 Sum_probs=113.5
Q ss_pred ceEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEe-----------
Q 011878 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQ----------- 73 (475)
Q Consensus 5 ke~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~----------- 73 (475)
.-..+|+||+|.+.- .++.+++.+...+.. -.++-+||+|.|++.-.-..+... .+...+|+.
T Consensus 132 pp~~vFvIDvS~~a~-~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~v~~y~l~~~--~~~~~~vf~G~k~~~~~q~~ 205 (769)
T 2nut_A 132 PLIFLYVVDTCMEDE-DLQALKESMQMSLSL---LPPTALVGLITFGRMVQVHELGCE--GISKSYVFRGTKDLSAKQLQ 205 (769)
T ss_dssp CCEEEEEEECCSCHH-HHHHHHHHHHHHHTT---SCTTCEEEEEEESSEEEEEESSCC--SSCEEEEEETTSCCCSHHHH
T ss_pred CCEEEEEEECCccHH-HHHHHHHHHHHHHHh---CCCCceEEEEEeCCEEEEEeCCCC--CCccceeecCCccccHHHHH
Confidence 356899999998743 355556666655542 235789999999976332222110 111111111
Q ss_pred -----------------------ecCCC-------CHHHHHHhhcCCCC--------CCCCChhHHHHHHHHHHHHHhcc
Q 011878 74 -----------------------DIKVV-------DGHLVQSLKHLPQG--------TCAGDFLDAIVVGVDMLIKKYGE 115 (475)
Q Consensus 74 -----------------------~l~~~-------~~~~i~~L~~l~~~--------~~~gd~~daL~va~~~l~~~~~~ 115 (475)
|++.. ......-|++|+.. .....+..||.+|..++...+.
T Consensus 206 ~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~- 284 (769)
T 2nut_A 206 EMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP- 284 (769)
T ss_dssp HHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSC-
T ss_pred HHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhccc-
Confidence 00000 00111224445431 1223689999999999875321
Q ss_pred CcceeeEEEEEeCCCCCCCCCCCCCc------------------------hhhHHHHHHHHhhcCcEEEEEEeccCCCCC
Q 011878 116 TYKGKKHLCLITDALCPLKDPDVGTK------------------------EDQVSTIARQMVAFGLRMKNIVVRASLSGE 171 (475)
Q Consensus 116 ~~~~~krI~l~Td~~~p~~~~~~~~~------------------------~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~ 171 (475)
...=||++|+.+-...+ ++--.. ..-+..++..+.+.||.+.+|.....
T Consensus 285 --~~GGrI~~F~sg~pt~G-pG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~---- 357 (769)
T 2nut_A 285 --NTGARIMMFIGGPATQG-PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALD---- 357 (769)
T ss_dssp --SSCCEEEEEESSCCCSS-SSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSS----
T ss_pred --CCCcEEEEEeCCCCCCC-CCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCC----
Confidence 23467999998744332 110000 01256688899999999999988431
Q ss_pred CCccccccchHHHHHHhhcCCCeEeehh---h--HHHhhccCccccCCC--ceeeeeeEeecCCeEEEEEEE
Q 011878 172 PHMRVIIENDNLLNIFSKKSSAKTLFVD---S--TTSLRGARKTRDISP--VTIFRGDLELSEKMKIKVWVY 236 (475)
Q Consensus 172 ~~~~~~~~n~~~l~~~~~~~~g~~~~~~---~--~~~ll~~~~~r~~~~--r~~~~~~l~ig~~~~I~V~~y 236 (475)
. -+-..+..++..++|.++..+ . ..+-+.+.-.|.... ...|.+.+++...=.|.|..|
T Consensus 358 -~-----vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~ 423 (769)
T 2nut_A 358 -Q-----TGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGA 423 (769)
T ss_dssp -C-----CCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEE
T ss_pred -c-----cChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEee
Confidence 1 124567778888999865322 1 112222222232211 246888888764333444443
No 35
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=96.17 E-value=0.044 Score=59.91 Aligned_cols=173 Identities=9% Similarity=0.051 Sum_probs=94.6
Q ss_pred eEEEEEEecCCCcCC--CchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCcccccc-CCC-----cccEEEEeecCC
Q 011878 6 EALLLLLDVSPSMHS--VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKE-VGG-----YEHVKVLQDIKV 77 (475)
Q Consensus 6 e~~vflID~s~sM~~--~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~-~~~-----y~~i~~~~~l~~ 77 (475)
-..+|+||+|.+.-+ .+..+++.+...+...--..++-+||+|.|++.=.-..+... .|+ -.+..++.+++.
T Consensus 188 p~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d 267 (810)
T 1pcx_A 188 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEE 267 (810)
T ss_dssp CEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTC
T ss_pred cEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhcccccccc
Confidence 468999999976532 133445555544431100113679999999886332211110 000 122222222221
Q ss_pred ---------------CCH---HHHHHhhcCCCC--CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCC
Q 011878 78 ---------------VDG---HLVQSLKHLPQG--TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD 137 (475)
Q Consensus 78 ---------------~~~---~~i~~L~~l~~~--~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~ 137 (475)
... ..++.|...... .....+..||.+|..++.. . .=||++||.+-...+. +
T Consensus 268 ~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-~------GGrI~~F~sg~pt~Gp-G 339 (810)
T 1pcx_A 268 PFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-V------GGKIIVVSGTLPNLGI-G 339 (810)
T ss_dssp C-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-T------CEEEEEEESSCCCSST-T
T ss_pred ccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-c------CCEEEEEecCCCCCCC-C
Confidence 111 234444442222 2234688999999988753 1 2489999987543321 1
Q ss_pred CC--------------------CchhhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEe
Q 011878 138 VG--------------------TKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (475)
Q Consensus 138 ~~--------------------~~~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~ 196 (475)
.- ...+-+..++.++.+.||.+.+|..... . -+-..+..++..++|.++
T Consensus 340 ~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~-----~-----~dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 340 KLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASED-----Y-----MDVASLSNLSRFTAGQTH 408 (810)
T ss_dssp CCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESS-----C-----CCHHHHHHHHHTTTCCEE
T ss_pred cccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCC-----c-----cChHHHHHHHhcCCcEEE
Confidence 00 0112356788899999999999988431 1 123567778888999754
No 36
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=95.97 E-value=0.087 Score=52.91 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=89.9
Q ss_pred EEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCC-----------cCccccc--cC-C--CcccEEE
Q 011878 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEE-----------TENELTK--EV-G--GYEHVKV 71 (475)
Q Consensus 8 ~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~-----------t~n~~~~--~~-~--~y~~i~~ 71 (475)
++||+|+|.||...++..+.....|++..--..++=++|+..|.-.. -.||-.. .+ + +|+|+
T Consensus 125 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~~-- 202 (454)
T 3vi3_B 125 LYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNV-- 202 (454)
T ss_dssp EEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEEE--
T ss_pred EEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcceeee--
Confidence 68999999999998888877777777644334578999999998531 1222110 00 1 45554
Q ss_pred EeecCCCCHHHHHHhhcCCCC-C--CCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCCCCCC---------
Q 011878 72 LQDIKVVDGHLVQSLKHLPQG-T--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVG--------- 139 (475)
Q Consensus 72 ~~~l~~~~~~~i~~L~~l~~~-~--~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~~~~~--------- 139 (475)
.+|+.-.....+.+.+...+ + ..-.-+|||..|.-- .++.+=++ ..|-||++||+..=... ++
T Consensus 203 -l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc-~~~igWR~-a~rllV~~TDa~fH~ag--DgkL~GIv~PN 277 (454)
T 3vi3_B 203 -LSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVC-GSLIGWRN-VTRLLVFSTDAGFHFAG--DGKLGGIVLPN 277 (454)
T ss_dssp -EEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHC-HHHHTCCS-SEEEEEEEESSCBCCTT--TTGGGTCCSCC
T ss_pred -eecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhcc-ccccCCcc-ceEEEEEECCCCcCcCC--CccccceecCC
Confidence 66776666777888886432 1 112357887766432 11123344 55666777876542221 11
Q ss_pred ----------------CchhhHHHHHHHHhhcCcEEEEEEe
Q 011878 140 ----------------TKEDQVSTIARQMVAFGLRMKNIVV 164 (475)
Q Consensus 140 ----------------~~~~~~~~~~~~l~~~~I~l~~i~i 164 (475)
.+.-.+.++++.|.+.+|.. +|.+
T Consensus 278 Dg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAV 317 (454)
T 3vi3_B 278 DGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAV 317 (454)
T ss_dssp CCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEE
T ss_pred CCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcE-EEEE
Confidence 01114778899999998853 3344
No 37
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=95.67 E-value=0.089 Score=58.13 Aligned_cols=174 Identities=9% Similarity=0.056 Sum_probs=95.2
Q ss_pred eEEEEEEecCCCcCC-C-chHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccC-C-----CcccEEEEeecCC
Q 011878 6 EALLLLLDVSPSMHS-V-LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEV-G-----GYEHVKVLQDIKV 77 (475)
Q Consensus 6 e~~vflID~s~sM~~-~-~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~-~-----~y~~i~~~~~l~~ 77 (475)
-..+|+||+|.+.-+ . +..+++.+...+...--..++-+||+|.|++.=.-..+.... | .-.+..++.+++.
T Consensus 304 pvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d 383 (926)
T 1m2v_B 304 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEE 383 (926)
T ss_dssp CBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSS
T ss_pred cEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhcccccccc
Confidence 468999999976422 1 334455555444311001125799999998863322221110 0 0133333333322
Q ss_pred C---------------CH---HHHHHhhcCCCC--CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCC--
Q 011878 78 V---------------DG---HLVQSLKHLPQG--TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKD-- 135 (475)
Q Consensus 78 ~---------------~~---~~i~~L~~l~~~--~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~-- 135 (475)
+ .. ..++.|...... .....+..||.+|..+|.. . .=||++|+.+-...+.
T Consensus 384 ~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-~------GGrI~~F~sg~Pt~GpG~ 456 (926)
T 1m2v_B 384 PFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-V------GGKIIVVSGTLPNLGIGK 456 (926)
T ss_dssp CCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-T------CEEEEEEESSCCCSSTTC
T ss_pred ccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-h------CCEEEEEecCCCCCCCCc
Confidence 1 11 234444442222 2234688999999988753 1 2489999987543321
Q ss_pred ---CCC----CC----------chhhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEe
Q 011878 136 ---PDV----GT----------KEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (475)
Q Consensus 136 ---~~~----~~----------~~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~ 196 (475)
.++ +. ..+-+..++.++.+.||.+.+|..... . -+-..+..++..++|.++
T Consensus 457 l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~-----~-----vdla~l~~l~~~TGG~v~ 524 (926)
T 1m2v_B 457 LQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASED-----Y-----MDVASLSNLSRFTAGQTH 524 (926)
T ss_dssp CCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESS-----C-----CCHHHHHHHHHTTTCCEE
T ss_pred ccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCC-----C-----cChHHHHHHHhcCCceEE
Confidence 000 00 112357789999999999999988431 1 123567778888999754
No 38
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.53 E-value=0.035 Score=59.28 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=74.0
Q ss_pred EEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCc-----------Ccccccc------CCCcccEE
Q 011878 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET-----------ENELTKE------VGGYEHVK 70 (475)
Q Consensus 8 ~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t-----------~n~~~~~------~~~y~~i~ 70 (475)
++||+|+|.||...++..++.+..|++..--..++=++|+..|.-... .||-... .=.|+|+
T Consensus 107 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~- 185 (687)
T 3k6s_B 107 LYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHV- 185 (687)
T ss_dssp EEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEE-
T ss_pred EEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceee-
Confidence 689999999999887777666666655432246789999999985322 1221000 0146665
Q ss_pred EEeecCCCCHHHHHHhhcCCCCC---CCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCC
Q 011878 71 VLQDIKVVDGHLVQSLKHLPQGT---CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALC 131 (475)
Q Consensus 71 ~~~~l~~~~~~~i~~L~~l~~~~---~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~ 131 (475)
.+|+.-.....+.|..+..+. ..-.-+|||..|.-- .++.+=++ ..|-|||+||+..
T Consensus 186 --l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc-~~~igWr~-a~rllV~~TDa~~ 245 (687)
T 3k6s_B 186 --LKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAAC-PEEIGWRN-VTRLLVFATDDGF 245 (687)
T ss_dssp --EEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTC-HHHHCCCS-SCCEEEEECSSCC
T ss_pred --cccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhc-ccccCCcc-ceEEEEEECCCcc
Confidence 578877778888888865431 112357787776511 11123233 5677788888764
No 39
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=95.31 E-value=1.5 Score=47.64 Aligned_cols=211 Identities=13% Similarity=0.137 Sum_probs=112.4
Q ss_pred eEEEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCcCccccccCCCcccEEEEe------------
Q 011878 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQ------------ 73 (475)
Q Consensus 6 e~~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~------------ 73 (475)
-..+|+||+|.+..+ ++.+++.+...+.. -.++-+||+|.|++.=.-..+... .....+|+.
T Consensus 122 p~~vFvIDvs~~~~~-l~~l~~sl~~~L~~---Lp~~~~VGlITf~~~V~~y~l~~~--~~~~~~V~~g~k~~~~~q~~~ 195 (768)
T 1m2o_A 122 PIFFFVVDLTSETEN-LDSLKESIITSLSL---LPPNALIGLITYGNVVQLHDLSSE--TIDRCNVFRGDREYQLEALTE 195 (768)
T ss_dssp CEEEEEEECCSCHHH-HHHHHHHHHHHHHT---SCTTCEEEEEEESSEEEECCCSSS--SSEEEEEEETTSCCCHHHHHH
T ss_pred CEEEEEEECCcCHHH-HHHHHHHHHHHHHh---CCCCCEEEEEEECCEEEEEECCCC--CCcceeeecCCccccHHHHHH
Confidence 568999999988643 55556666655542 235789999999976322222110 111122221
Q ss_pred -----------------------ec-CCCC----------HHHHHHhhcCCCC------C--CCCChhHHHHHHHHHHHH
Q 011878 74 -----------------------DI-KVVD----------GHLVQSLKHLPQG------T--CAGDFLDAIVVGVDMLIK 111 (475)
Q Consensus 74 -----------------------~l-~~~~----------~~~i~~L~~l~~~------~--~~gd~~daL~va~~~l~~ 111 (475)
++ .+++ .....-|++|+.. . ....+..||.+|..++..
T Consensus 196 ~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 275 (768)
T 1m2o_A 196 MLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQG 275 (768)
T ss_dssp HHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHH
T ss_pred HHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhh
Confidence 10 0000 0111234455431 1 123689999999999875
Q ss_pred HhccCcceeeEEEEEeCCCCCCCCCCCCCc------------------------hhhHHHHHHHHhhcCcEEEEEEeccC
Q 011878 112 KYGETYKGKKHLCLITDALCPLKDPDVGTK------------------------EDQVSTIARQMVAFGLRMKNIVVRAS 167 (475)
Q Consensus 112 ~~~~~~~~~krI~l~Td~~~p~~~~~~~~~------------------------~~~~~~~~~~l~~~~I~l~~i~i~~~ 167 (475)
.+. ...=||++|+.+-...+ ++--.. .+-+..++.++.+.||.+.+|.....
T Consensus 276 ~~~---~~GGrI~~F~sg~pt~G-pG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~ 351 (768)
T 1m2o_A 276 CYK---NIPARIILFASGPGTVA-PGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYD 351 (768)
T ss_dssp HCT---TSCCEEEEEESSCCCSS-SSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred ccC---CCCcEEEEEeCCCCCCC-CccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCC
Confidence 321 23467999998844332 110000 01235678888999999999988431
Q ss_pred CCCCCCccccccchHHHHHHhhcCCCeEee---hhh--HHHhhccCccccCCC--ceeeeeeEeecCCeEEEEEEE
Q 011878 168 LSGEPHMRVIIENDNLLNIFSKKSSAKTLF---VDS--TTSLRGARKTRDISP--VTIFRGDLELSEKMKIKVWVY 236 (475)
Q Consensus 168 ~~~~~~~~~~~~n~~~l~~~~~~~~g~~~~---~~~--~~~ll~~~~~r~~~~--r~~~~~~l~ig~~~~I~V~~y 236 (475)
. -+-..+..++..++|.++- +.. ..+-+.+.-.|.... -..|.+.+++...-.|.|..|
T Consensus 352 -----~-----~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~ 417 (768)
T 1m2o_A 352 -----Q-----IGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGL 417 (768)
T ss_dssp -----C-----CSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEE
T ss_pred -----c-----cChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhhccccccceEEEEEEEEEecCCceEEEe
Confidence 1 1235677788889997642 222 122222222222110 246888887764333444443
No 40
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=94.98 E-value=0.082 Score=53.47 Aligned_cols=120 Identities=23% Similarity=0.220 Sum_probs=73.4
Q ss_pred EEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCc------------Ccccccc---C---CCcccE
Q 011878 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET------------ENELTKE---V---GGYEHV 69 (475)
Q Consensus 8 ~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t------------~n~~~~~---~---~~y~~i 69 (475)
++||+|+|.||...++..++....|++..--..++=++|+..|.-... .||-... . =.|+|+
T Consensus 114 Ly~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~ 193 (472)
T 3t3p_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHV 193 (472)
T ss_dssp EEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEE
T ss_pred EEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEe
Confidence 689999999999988877777777766443335789999999975421 1221000 0 156665
Q ss_pred EEEeecCCCCHHHHHHhhcCCCC-C--CCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCC
Q 011878 70 KVLQDIKVVDGHLVQSLKHLPQG-T--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALC 131 (475)
Q Consensus 70 ~~~~~l~~~~~~~i~~L~~l~~~-~--~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~ 131 (475)
.+|+.-.....+.|.++..+ + ..-.-+|||..|.-- .++.+=++...|-||++||+..
T Consensus 194 ---l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC-~~~igWR~~a~rllV~~TDa~~ 254 (472)
T 3t3p_B 194 ---LTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVC-DEKIGWRNDASHLLVFTTDAKT 254 (472)
T ss_dssp ---EEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHC-HHHHTCCSSSEEEEEEEESSCB
T ss_pred ---eccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcc-hhhcCCCCCceEEEEEECCCCc
Confidence 56776666677778876443 1 122357887766521 1112323344666777788754
No 41
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=94.85 E-value=0.14 Score=52.11 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=74.2
Q ss_pred EEEEEecCCCcCCCchHHHHHHHHHHHHHHhcCCccEEEEEEEccCCc-----------Cccccc------cCCCcccEE
Q 011878 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET-----------ENELTK------EVGGYEHVK 70 (475)
Q Consensus 8 ~vflID~s~sM~~~~~~a~~~~~~l~~~ki~~~~~D~vglvlfgt~~t-----------~n~~~~------~~~~y~~i~ 70 (475)
++||+|+|.||...++..++....|.+.---..++=++|+..|.-... .||-.. ..=.|+|+
T Consensus 135 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~fr~~- 213 (503)
T 3v4v_B 135 LYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHV- 213 (503)
T ss_dssp EEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSEEEE-
T ss_pred EEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcceEEE-
Confidence 689999999999988888877777766543345789999999975421 122110 00156665
Q ss_pred EEeecCCCCHHHHHHhhcCCCC-C--CCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCC
Q 011878 71 VLQDIKVVDGHLVQSLKHLPQG-T--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALC 131 (475)
Q Consensus 71 ~~~~l~~~~~~~i~~L~~l~~~-~--~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~ 131 (475)
.+|+.-.....+.|.+...+ + ..-.-+|||..|.-- .++.+=++ ..|-||++||+..
T Consensus 214 --l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC-~~~IgWR~-a~rllV~~TDA~f 273 (503)
T 3v4v_B 214 --LSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALC-QEQIGWRN-VSRLLVFTSDDTF 273 (503)
T ss_dssp --EEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHC-HHHHTCCS-SEEEEEEEESSCB
T ss_pred --EEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhc-ccccCCCc-ceEEEEEECCCCc
Confidence 66777777778888876443 1 122357887766521 11122232 4566777788754
No 42
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=94.05 E-value=1.3 Score=47.85 Aligned_cols=169 Identities=13% Similarity=0.117 Sum_probs=90.3
Q ss_pred eEEEEEEecCCCcCC--CchHHHHHHHHHHHHHHhcCC---ccEEEEEEEccCCcCccccccCCCcccEEEEeecC----
Q 011878 6 EALLLLLDVSPSMHS--VLPDVEKLCSRLIQKKLIYGK---NHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK---- 76 (475)
Q Consensus 6 e~~vflID~s~sM~~--~~~~a~~~~~~l~~~ki~~~~---~D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l~---- 76 (475)
-+.+|+||+|..=-+ .+..+++.+...+. .-| +-+||+|.|++.=.-.++.... .-.+..++.+++
T Consensus 161 p~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~----~lp~~~~~~VG~ITfd~~vh~y~l~~~~-~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 161 AVYLFVLDVSHNAVEAGYLTILCQSLLENLD----KLPGDSRTRIGFMTFDSTIHFYNLQEGL-SQPQMLIVSDIDDVFL 235 (751)
T ss_dssp CEEEEEEECSHHHHHHTHHHHHHHHHHHHTT----TSSCCTTCEEEEEEESSSEEEEECCTTC-SSCEEEEESCTTCTTS
T ss_pred cEEEEEEEccHhhhhhhHHHHHHHHHHHHHH----hcCCCcCcEEEEEEeCCEEEEEECCCCc-ccceeeccccccccCC
Confidence 568999999853111 12333444443333 323 3389999999863322221100 111233332322
Q ss_pred -----------CCCH---HHHHHhhcCCCC--CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCC-----
Q 011878 77 -----------VVDG---HLVQSLKHLPQG--TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKD----- 135 (475)
Q Consensus 77 -----------~~~~---~~i~~L~~l~~~--~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~----- 135 (475)
.... ..++.|...... .....+..||.+|..++.. . .=||++|+.+-...+.
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~-~------GGrI~~F~sg~pt~GpG~l~~ 308 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP-T------GGRVSVFQTQLPSLGAGLLQS 308 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT-T------CEEEEEEECSCCCSSTTCCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc-C------CCEEEEEecCCCCCCCCcccc
Confidence 1111 123333332121 1234678899999888642 1 2478888876433321
Q ss_pred CCCC-------------CchhhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEe
Q 011878 136 PDVG-------------TKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (475)
Q Consensus 136 ~~~~-------------~~~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~ 196 (475)
.++. ...+-+..+|.++.+.||.+.+|..... . -+-..+..++..++|.++
T Consensus 309 r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~-----~-----~dlatl~~l~~~TGG~v~ 372 (751)
T 3eh1_A 309 REDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQ-----Y-----SDLASLACMSKYSAGCIY 372 (751)
T ss_dssp CCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSS-----C-----CCHHHHTHHHHTTTCCEE
T ss_pred ccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCc-----c-----cChHhHHHHHhhcCceEE
Confidence 0000 1123478899999999999999987431 1 113556677888888764
No 43
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=93.46 E-value=2.1 Score=46.44 Aligned_cols=172 Identities=14% Similarity=0.207 Sum_probs=90.2
Q ss_pred eEEEEEEecCCC-cCC-CchHHHHHHHHHHHHHHhcCCc--------cEEEEEEEccCCcCccccccCCCcccEEEEeec
Q 011878 6 EALLLLLDVSPS-MHS-VLPDVEKLCSRLIQKKLIYGKN--------HEVGVILFGTEETENELTKEVGGYEHVKVLQDI 75 (475)
Q Consensus 6 e~~vflID~s~s-M~~-~~~~a~~~~~~l~~~ki~~~~~--------D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l 75 (475)
-..+|+||+|.+ ... .+..+++.+...+. .-|. -+||+|.|++.=.--++.... .-.+..++-++
T Consensus 178 p~y~FvIDvs~~av~sg~l~~~~~sl~~~L~----~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~-~q~q~~vv~d~ 252 (770)
T 3efo_B 178 PAFIFMIDVSYSNIKNGLVKLICEELKTMLE----KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNL-AQPQMMVVTDV 252 (770)
T ss_dssp CEEEEEEECSHHHHHTTHHHHHHHHHHHHGG----GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTC-SSCEEEEECCT
T ss_pred cEEEEEEEcchhhccchHHHHHHHHHHHHHH----hCCccccccCccceEEEEEeCCEEEEEeCCCcc-cCceEEEeccc
Confidence 478999999854 222 23445555555554 3343 499999999863222221100 01122222222
Q ss_pred CCC--------------CHH----HHHHhhcC-CCC-CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCC
Q 011878 76 KVV--------------DGH----LVQSLKHL-PQG-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKD 135 (475)
Q Consensus 76 ~~~--------------~~~----~i~~L~~l-~~~-~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~ 135 (475)
+.+ +-. .++.|.+. ... .....+..||.+|+..+... ...=||++|+.+--...+
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~-----~~GGkI~~F~s~lP~t~G 327 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAA-----DCPGKLFIFHSSLPTAEA 327 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHH-----TCCEEEEEEECSCCCSSS
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccC-----CCCcEEEEEecCCCCcCC
Confidence 110 111 22333222 111 22345677888887776531 112478888776221111
Q ss_pred CC------C-------------CCchhhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEe
Q 011878 136 PD------V-------------GTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (475)
Q Consensus 136 ~~------~-------------~~~~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~ 196 (475)
++ + ....+-+..++.++.+.||.+.+|..... . -+-..+..++..++|.++
T Consensus 328 pG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~-----~-----vdlatl~~l~~~TGG~v~ 397 (770)
T 3efo_B 328 PGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQ-----Y-----VDVASLGLVPQLTGGTLY 397 (770)
T ss_dssp TTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSS-----C-----CCHHHHTHHHHHTTCCEE
T ss_pred CccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCC-----c-----cChHHHHHHHhhcCceEE
Confidence 00 0 01123567889999999999999987421 1 123556677888999764
Q ss_pred e
Q 011878 197 F 197 (475)
Q Consensus 197 ~ 197 (475)
-
T Consensus 398 ~ 398 (770)
T 3efo_B 398 K 398 (770)
T ss_dssp E
T ss_pred E
Confidence 3
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=93.10 E-value=1.8 Score=46.86 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=90.9
Q ss_pred eEEEEEEecCCCcC--CCchHHHHHHHHHHHHHHhcCCc--------cEEEEEEEccCCcCccccccCCCcccEEEEeec
Q 011878 6 EALLLLLDVSPSMH--SVLPDVEKLCSRLIQKKLIYGKN--------HEVGVILFGTEETENELTKEVGGYEHVKVLQDI 75 (475)
Q Consensus 6 e~~vflID~s~sM~--~~~~~a~~~~~~l~~~ki~~~~~--------D~vglvlfgt~~t~n~~~~~~~~y~~i~~~~~l 75 (475)
-..+|+||+|.+-- ..+..+++.+...+. .-|. -+||+|.|++.=.--++..+ ..-.+..++-++
T Consensus 174 p~y~FvIDvs~~av~sg~l~~~~~si~~~L~----~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~-~~~~q~~vv~dl 248 (766)
T 3eh2_A 174 PAFIFMIDVSYNAIRTGLVRLLCEELKSLLD----FLPREGGAEESAIRVGFVTYNKVLHFYNVKSS-LAQPQMMVVSDV 248 (766)
T ss_dssp CEEEEEEECSHHHHHTTHHHHHHHHHHHHGG----GCCCCSSCSSCCCEEEEEEESSSEEEEECCTT-CSSCEEEEECCT
T ss_pred CEEEEEEECchhhccchHHHHHHHHHHHHHH----hCCcccccCCccceEEEEEeCCEEEEEECCCC-CCCceEEEecCh
Confidence 46799999995321 123444555555554 3343 58999999986332222110 012234444333
Q ss_pred CCCC--------------HH----HHHHhhcCCCC--CCCCChhHHHHHHHHHHHHHhccCcceeeEEEEEeCCCCCCCC
Q 011878 76 KVVD--------------GH----LVQSLKHLPQG--TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKD 135 (475)
Q Consensus 76 ~~~~--------------~~----~i~~L~~l~~~--~~~gd~~daL~va~~~l~~~~~~~~~~~krI~l~Td~~~p~~~ 135 (475)
+.+- .. .++.|...... .....+..||.+|+..+.. . ...=||++|+.+--...+
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~--~---~~GGkI~~F~s~lP~t~G 323 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKA--A---ECAGKLFLFHTSLPIAEA 323 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHH--T---TCCEEEEEEECSCCCSSS
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhcc--C---CCCcEEEEEecCCCCcCC
Confidence 2110 11 12223222111 1233567788888777643 1 124678888766221111
Q ss_pred C------CC-------------CCchhhHHHHHHHHhhcCcEEEEEEeccCCCCCCCccccccchHHHHHHhhcCCCeEe
Q 011878 136 P------DV-------------GTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (475)
Q Consensus 136 ~------~~-------------~~~~~~~~~~~~~l~~~~I~l~~i~i~~~~~~~~~~~~~~~n~~~l~~~~~~~~g~~~ 196 (475)
+ ++ ....+-+..++.++.+.||.+.+|..... . -+-..+..++..++|.++
T Consensus 324 pG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~-----~-----vdlatl~~l~~~TGG~v~ 393 (766)
T 3eh2_A 324 PGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQ-----Y-----VDVATLSVVPQLTGGSVY 393 (766)
T ss_dssp TTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSS-----C-----CCHHHHTHHHHHTTCCEE
T ss_pred CcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCC-----C-----cChHHHHHHHhhcCceEE
Confidence 0 00 01123567889999999999999987421 1 123556677888899764
No 45
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=56.72 E-value=15 Score=32.33 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCCCCCCCChhhHHHHHHhhhc
Q 011878 427 EQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALEVLNICGYFG 471 (475)
Q Consensus 427 ~~q~~~~~~lI~~l~l~~~~~~~~~~p~~~~NP~lq~~y~~l~~~ 471 (475)
...++++..|+++..+.++- ....+..|.||.||.+|+-|...
T Consensus 66 q~H~dal~~Ll~rYgl~~P~--~~~~~G~f~~p~lq~LY~~L~e~ 108 (196)
T 3q4o_A 66 QTHMDAVKYLLEKYNIPDPV--KNDSIGVFSNPKFEELYKKLVEK 108 (196)
T ss_dssp HHHHHHHHHHHHHTTCCCSC--SCCSTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCC--CCCCCCeeccHhHHHHHHHHHHH
Confidence 45788999999999998642 12457999999999999877543
No 46
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=27.55 E-value=1e+02 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=27.4
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEecc
Q 011878 124 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRA 166 (475)
Q Consensus 124 ~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~~ 166 (475)
+|+||+|.... ..++.+++.|++.| ++.++..+.
T Consensus 3 ILlTNDDGi~a--------pGi~aL~~~l~~~g-~V~VVAP~~ 36 (244)
T 2e6c_A 3 ILVTNDDGIYS--------PGLWALAEAASQFG-EVFVAAPDT 36 (244)
T ss_dssp EEEECSSCTTC--------HHHHHHHHHHTTTS-EEEEEEECS
T ss_pred EEEEcCCCCCc--------HhHHHHHHHHHhCC-CEEEEecCC
Confidence 79999999753 46999999999988 787777643
No 47
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=26.40 E-value=1.1e+02 Score=27.77 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=27.0
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEec
Q 011878 124 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVR 165 (475)
Q Consensus 124 ~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~ 165 (475)
+|+||+|.... ..++.+++.|++.| ++.++..+
T Consensus 3 ILlTNDDGi~a--------pGi~aL~~~l~~~g-~V~VVAP~ 35 (247)
T 1j9j_A 3 ILVTNDDGIQS--------KGIIVLAELLSEEH-EVFVVAPD 35 (247)
T ss_dssp EEEECSSCTTC--------HHHHHHHHHHTTTS-EEEEEEES
T ss_pred EEEEcCCCCCc--------HhHHHHHHHHHhCC-CEEEEecC
Confidence 79999999753 46999999999988 77777764
No 48
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=25.03 E-value=1.3e+02 Score=27.99 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=27.0
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEec
Q 011878 124 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVR 165 (475)
Q Consensus 124 ~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~ 165 (475)
+|+||+|.... ..++.+++.|++.| ++.++..+
T Consensus 3 ILlTNDDGi~A--------pGi~aL~~aL~~~g-~V~VVAP~ 35 (280)
T 1l5x_A 3 ILVTNDDGVHS--------PGLRLLYQFALSLG-DVDVVAPE 35 (280)
T ss_dssp EEEECSSCTTC--------HHHHHHHHHHGGGS-EEEEEEES
T ss_pred EEEEcCCCCCc--------HhHHHHHHHHHhCC-CEEEEecC
Confidence 79999999753 46999999999988 77777764
No 49
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=24.22 E-value=1.3e+02 Score=27.52 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=27.1
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEec
Q 011878 124 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVR 165 (475)
Q Consensus 124 ~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~ 165 (475)
+|+||+|.... ..++.+++.|++.| ++.++..+
T Consensus 4 ILlTNDDGi~a--------pGi~aL~~~l~~~g-~V~VVAP~ 36 (251)
T 2phj_A 4 FLLVNDDGYFS--------PGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp EEEECSSCTTC--------HHHHHHHHHHTTTS-EEEEEEES
T ss_pred EEEECCCCCCC--------HHHHHHHHHHHhcC-CEEEEecC
Confidence 79999999643 46999999999999 88877764
No 50
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=22.91 E-value=1.4e+02 Score=27.30 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEec
Q 011878 124 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVR 165 (475)
Q Consensus 124 ~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~ 165 (475)
+|+||+|.... ..++.+++.|++.| ++.++..+
T Consensus 4 ILlTNDDGi~a--------pGi~aL~~~L~~~g-~V~VVAP~ 36 (254)
T 2v4n_A 4 ILLSNDDGVHA--------PGIQTLAKALREFA-DVQVVAPD 36 (254)
T ss_dssp EEEECSSCTTC--------HHHHHHHHHHTTTS-EEEEEEES
T ss_pred EEEEcCCCCCC--------HHHHHHHHHHHhCC-cEEEEeeC
Confidence 79999999753 46999999999887 77777664
No 51
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=21.51 E-value=1.6e+02 Score=26.86 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=26.5
Q ss_pred EEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEEec
Q 011878 123 LCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVR 165 (475)
Q Consensus 123 I~l~Td~~~p~~~~~~~~~~~~~~~~~~~l~~~~I~l~~i~i~ 165 (475)
-+|+||+|.-.. .-++.+++.|++.| ++.++..+
T Consensus 3 ~ILlTNDDGi~a--------pGi~~L~~~l~~~g-~V~VvAP~ 36 (251)
T 2wqk_A 3 TFLLVNDDGYFS--------PGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp EEEEECSSCTTC--------HHHHHHHHHHTTTS-EEEEEEES
T ss_pred EEEEEcCCCCCc--------HHHHHHHHHHHhCC-CEEEEeeC
Confidence 479999999543 46899999999998 67776654
Done!