Citrus Sinensis ID: 011879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MPFNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSSAGPSLLPKIPTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMVHPSPSQWSNEGSSSNSGGKSRGGGGKSSGQFPHWFKREDRKLLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQV
cccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHcccccEEEEEEEccEEEEEEEEccccccEEEEEEccccEEEEEccccccccccccEEEEEEEEccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEccEEEEccEEEEEccEEEEEccccccccEEEEccccccccccEEEEEccEEEccccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccccc
MPFNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMssagpsllpkiptgrhngsgdlsSDLRTWLSAALINqetcidgfdgtnSIVKGVVSGSLNQISSSVQELLTmvhpspsqwsnegsssnsggksrggggkssgqfphwfkredrklLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIIsgnrnfmdgwTTFRSATfavsgrgfiarditfentagpekhQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFREckisgtvdfifGDATAMFQNCQILAKKgldnqkntitahgrkdpneptgfsiqfcnitadsdllpfvnstetylgrpwklySRTVFMQSYmsnvirpkgwlewnndfaldtlyygeyknygpggglatritwpgyhilnnavqannFTVAQFLEgnlwlpstgvkytaglqv
MPFNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSSAGPSLLPKIPTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMVHPSPSQWSNEGSSSNSGGKSRGGGGKSSGQFPHWFKREDRKLLLVNGVQADVvvaadgtgnfTKIMDAVLAAEDYSMKRFVIYikrgvykenveikkkkwnlmmvGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITahgrkdpnepTGFSIQFCNITADSDLLPFVNSTetylgrpwkLYSRTVFMQSYMSNvirpkgwleWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQV
MPFNRWfllfltlliclvifvSQMLYQTVlislisllmssAGPSLLPKIPTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMVHPSPSQWsnegsssnsggksrggggkssgQFPHWFKREDRKLLLVNGVQadvvvaadGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQV
**FNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSS**********************DLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQ********************************************HWFKREDRKLLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLD*****************TGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTA****
***NRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSSAGPS*****************SDLRTWLSAALINQETCIDGFDG*****************SSVQELLTMVHP******************************HWFKREDRKLLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQV
MPFNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSSAGPSLLPKIPTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMV****************************GQFPHWFKREDRKLLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQV
MPFNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSSAGPSLLPKIPTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMVHPSPSQ************************FPHWFKREDRKLLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAG***
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPFNRWFLLFLTLLICLVIFVSQMLYQTVLISLISLLMSSAGPSLLPKIPTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMVHPSPSQWSNEGSSSNSGGKSRGGGGKSSGQFPHWFKREDRKLLLVNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
Q43062522 Pectinesterase/pectineste N/A no 0.854 0.777 0.738 0.0
Q9SMY7525 Probable pectinesterase/p yes no 0.896 0.811 0.685 0.0
Q9LXK7527 Probable pectinesterase/p no no 0.884 0.796 0.689 1e-179
Q9M9W7543 Putative pectinesterase/p no no 0.812 0.710 0.508 1e-121
Q9FK05587 Probable pectinesterase/p no no 0.869 0.703 0.509 1e-120
Q9M3B0598 Probable pectinesterase/p no no 0.865 0.687 0.510 1e-120
Q96575550 Pectinesterase 2.2 OS=Sol N/A no 0.833 0.72 0.496 1e-116
P14280546 Pectinesterase 1 OS=Solan N/A no 0.833 0.725 0.493 1e-115
P09607550 Pectinesterase 2.1 OS=Sol N/A no 0.833 0.72 0.491 1e-115
P83947545 Pectinesterase/pectineste N/A no 0.833 0.726 0.483 1e-115
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/425 (73%), Positives = 358/425 (84%), Gaps = 19/425 (4%)

Query: 52  GRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMV 111
           G++N +G LSSDLRTWLSAAL+NQ+TC +GF+GTNSIV+G++S  L Q++S VQELLT V
Sbjct: 116 GKNNSTGKLSSDLRTWLSAALVNQDTCSNGFEGTNSIVQGLISAGLGQVTSLVQELLTQV 175

Query: 112 HPSPSQWSNEGSSSNSGGKSRGGGGKSSGQFPHWFKREDRKLLLVNGVQADVVVAADGTG 171
           HP+          SN  G +        GQ P W K +DRKLL  +GV  D +VA DGTG
Sbjct: 176 HPN----------SNQQGPN--------GQIPSWVKTKDRKLLQADGVSVDAIVAQDGTG 217

Query: 172 NFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNF 231
           NFT + DAVLAA DYSM+R+VIYIKRG YKENVEIKKKKWNLMM+GDG+DATIISGNR+F
Sbjct: 218 NFTNVTDAVLAAPDYSMRRYVIYIKRGTYKENVEIKKKKWNLMMIGDGMDATIISGNRSF 277

Query: 232 MDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDS 291
           +DGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSV++RC I+GYQD+
Sbjct: 278 VDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDT 337

Query: 292 LYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPT 351
           LYTHTMRQF+R+CKISGTVDFIFGDAT +FQNCQILAKKGL NQKN+ITA GRKDPNEPT
Sbjct: 338 LYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGRKDPNEPT 397

Query: 352 GFSIQFCNITADSDL-LPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDF 410
           G SIQFCNITADSDL    VNST TYLGRPWKLYSRTV MQS++SNVIRP+GWLEWN DF
Sbjct: 398 GISIQFCNITADSDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDF 457

Query: 411 ALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYT 470
           AL++L+YGEY NYGPG GL +R+ WPGY + N + QA N+TVAQF+EGNLWLPSTGVKYT
Sbjct: 458 ALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKYT 517

Query: 471 AGLQV 475
           A   V
Sbjct: 518 AEFGV 522
May have roles in the deposition of pectin in developing tissues and in the wall loosening and cell separation that occurs in cell expansion, fruit ripening and abscission.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SMY7|PME44_ARATH Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9W7|PME22_ARATH Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|Q96575|PME22_SOLLC Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1 Back     alignment and function description
>sp|P14280|PME1_SOLLC Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5 Back     alignment and function description
>sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
354718776525 PME4 [Gossypium barbadense] 0.894 0.809 0.758 0.0
354718778514 PME3 [Gossypium barbadense] 0.871 0.805 0.757 0.0
118481033528 unknown [Populus trichocarpa] 0.882 0.793 0.748 0.0
224069288520 predicted protein [Populus trichocarpa] 0.882 0.805 0.748 0.0
357450219527 Pectinesterase [Medicago truncatula] gi| 0.865 0.779 0.727 0.0
6093744522 RecName: Full=Pectinesterase/pectinester 0.854 0.777 0.738 0.0
356556436528 PREDICTED: pectinesterase/pectinesterase 0.865 0.778 0.729 0.0
119507467509 pectin methylesterase 4 [Pyrus communis] 0.854 0.797 0.726 0.0
449456903507 PREDICTED: pectinesterase/pectinesterase 0.848 0.794 0.716 0.0
356532851528 PREDICTED: pectinesterase/pectinesterase 0.861 0.774 0.720 0.0
>gi|354718776|gb|AER38245.1| PME4 [Gossypium barbadense] Back     alignment and taxonomy information
 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/426 (75%), Positives = 371/426 (87%), Gaps = 1/426 (0%)

Query: 50  PTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLT 109
           P  + N +GDLSSDLRTWLSAA++NQ+TCIDGF+GTNS+VK VVSGSLNQI+S V+ LL 
Sbjct: 101 PNAKDNSTGDLSSDLRTWLSAAMVNQQTCIDGFEGTNSMVKTVVSGSLNQITSLVRNLLI 160

Query: 110 MVHPSPSQWSNEGSSSNSGGKSRGGGGKSSGQFPHWFKREDRKLLLVNGVQADVVVAADG 169
           MVHP P+  SN G+ + S     GGG     +FP WFKREDR+LL +NGV A+VVVAADG
Sbjct: 161 MVHPGPNSKSN-GTRNGSQKGGGGGGHPGQSRFPVWFKREDRRLLQINGVTANVVVAADG 219

Query: 170 TGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNR 229
           +GNFT+IMDAV  A D SM R+VIYIK+G+YKENVEIKKKKWNL+M+GDG+D T+ISGNR
Sbjct: 220 SGNFTRIMDAVETAPDKSMNRYVIYIKKGLYKENVEIKKKKWNLVMIGDGMDVTVISGNR 279

Query: 230 NFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQ 289
           +F+DGWTT RSATFAVSGRGFIARDITFENTAGP+KHQAVALRSDSDLSV+FRCAIKGYQ
Sbjct: 280 SFIDGWTTLRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCAIKGYQ 339

Query: 290 DSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNE 349
           DSLYTHTMRQF+RECKI+GTVDFIFGD   +FQNCQILAK+GL +QKNTITA GRKDPN+
Sbjct: 340 DSLYTHTMRQFYRECKITGTVDFIFGDGAVLFQNCQILAKQGLPSQKNTITAQGRKDPNQ 399

Query: 350 PTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNND 409
           PTGFSIQFCNI+AD+DLLP VNST TYLGRPWKLYSRT+ MQSY+S+ IRP+GWLEWN D
Sbjct: 400 PTGFSIQFCNISADTDLLPSVNSTPTYLGRPWKLYSRTIIMQSYISDAIRPQGWLEWNQD 459

Query: 410 FALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKY 469
           FALDTLYY EY N GPG  L+ R+ WPGYH+LNN+ QA NFTVAQF+EG+LWLPSTGVKY
Sbjct: 460 FALDTLYYAEYMNNGPGASLSERVKWPGYHVLNNSAQAVNFTVAQFIEGDLWLPSTGVKY 519

Query: 470 TAGLQV 475
           T+G  V
Sbjct: 520 TSGFGV 525

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|354718778|gb|AER38246.1| PME3 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|118481033|gb|ABK92470.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224069288|ref|XP_002326321.1| predicted protein [Populus trichocarpa] gi|222833514|gb|EEE71991.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357450219|ref|XP_003595386.1| Pectinesterase [Medicago truncatula] gi|355484434|gb|AES65637.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|6093744|sp|Q43062.1|PME_PRUPE RecName: Full=Pectinesterase/pectinesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase inhibitor PPE8B; AltName: Full=Pectin methylesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase PPE8B; Short=PE PPE8B; AltName: Full=Pectin methylesterase PPE8B; Flags: Precursor gi|1213629|emb|CAA65237.1| pectinesterase [Prunus persica] Back     alignment and taxonomy information
>gi|356556436|ref|XP_003546532.1| PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] Back     alignment and taxonomy information
>gi|119507467|dbj|BAF42041.1| pectin methylesterase 4 [Pyrus communis] Back     alignment and taxonomy information
>gi|449456903|ref|XP_004146188.1| PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532851|ref|XP_003534983.1| PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2125949525 PME44 "pectin methylesterase 4 0.896 0.811 0.658 2.8e-160
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.884 0.796 0.665 4.1e-159
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.84 0.734 0.489 1.7e-107
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.865 0.687 0.498 4.4e-107
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.869 0.703 0.492 2.5e-106
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.682 0.584 0.554 1.5e-102
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.64 0.530 0.568 5.9e-101
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.673 0.552 0.534 1.1e-99
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.698 0.560 0.530 2.9e-99
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 0.637 0.485 0.566 5.3e-98
TAIR|locus:2125949 PME44 "pectin methylesterase 44" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
 Identities = 285/433 (65%), Positives = 347/433 (80%)

Query:    50 PTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLT 109
             P G+ NG+GD+ SD RTWLSAAL NQ TC++GFDGT+ +VK +V+GSL+Q+ S ++ELL 
Sbjct:    93 PKGKGNGTGDVGSDTRTWLSAALSNQATCMEGFDGTSGLVKSLVAGSLDQLYSMLRELLP 152

Query:   110 MVHPSPSQWXXXXXXXXXXXXXX-------XXXXXXXXQFPHWFKREDRKLLLVNGVQXX 162
             +V P                                  QFP W + +DRKLL  NG    
Sbjct:   153 LVQPEQKPKAVSKPGPIAKGPKAPPGRKLRDTDEDESLQFPDWVRPDDRKLLESNGRTYD 212

Query:   163 XXXXXXGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDA 222
                   GTGNFTKIMDA+  A DYS  RFVIYIK+G+Y ENVEIKKKKWN++M+GDGID 
Sbjct:   213 VSVALDGTGNFTKIMDAIKKAPDYSSTRFVIYIKKGLYLENVEIKKKKWNIVMLGDGIDV 272

Query:   223 TIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFR 282
             T+ISGNR+F+DGWTTFRSATFAVSGRGF+ARDITF+NTAGPEKHQAVALRSDSDLSV+FR
Sbjct:   273 TVISGNRSFIDGWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALRSDSDLSVFFR 332

Query:   283 CAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAH 342
             CA++GYQD+LYTHTMRQF+REC I+GTVDFIFGD T +FQNCQILAK+GL NQKNTITA 
Sbjct:   333 CAMRGYQDTLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCQILAKRGLPNQKNTITAQ 392

Query:   343 GRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKG 402
             GRKD N+P+GFSIQF NI+AD+DL+P++N+T TYLGRPWKLYSRTVF+++ MS+V+RP+G
Sbjct:   393 GRKDVNQPSGFSIQFSNISADADLVPYLNTTRTYLGRPWKLYSRTVFIRNNMSDVVRPEG 452

Query:   403 WLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWL 462
             WLEWN DFALDTL+YGE+ NYGPG GL++R+ WPGYH+ NN+ QANNFTV+QF++GNLWL
Sbjct:   453 WLEWNADFALDTLFYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWL 512

Query:   463 PSTGVKYTAGLQV 475
             PSTGV ++ GL +
Sbjct:   513 PSTGVTFSDGLYI 525
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43062PME_PRUPE3, ., 1, ., 1, ., 1, 10.73880.85470.7777N/Ano
Q9SMY7PME44_ARATH3, ., 1, ., 1, ., 1, 10.68590.89680.8114yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.946
3rd Layer3.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.931
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.929
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.928
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.926
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.925
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.922
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.920
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.919
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.919
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.919

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 0.0
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-177
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-172
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-164
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-153
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-153
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-151
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-151
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-151
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-147
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-146
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-142
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-138
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-129
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-129
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-127
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-125
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-118
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-110
PLN02197588 PLN02197, PLN02197, pectinesterase 2e-83
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 3e-64
PLN02432293 PLN02432, PLN02432, putative pectinesterase 9e-63
PLN02773317 PLN02773, PLN02773, pectinesterase 5e-62
PLN02304379 PLN02304, PLN02304, probable pectinesterase 6e-61
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 2e-57
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-50
PLN02497331 PLN02497, PLN02497, probable pectinesterase 2e-50
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-48
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-43
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-39
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-38
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 8e-20
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 3e-08
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 4e-07
cd03013155 cd03013, PRX5_like, Peroxiredoxin (PRX) family, PR 0.002
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 0.003
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  792 bits (2048), Expect = 0.0
 Identities = 326/426 (76%), Positives = 375/426 (88%), Gaps = 4/426 (0%)

Query: 50  PTGRHNGSGDLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLT 109
           P G+ N +GD+ SDLRTWLSAAL NQ+TCI+GFDGTN IVK +V+GSL+Q+ S+V+ELLT
Sbjct: 99  PNGKDNSTGDVGSDLRTWLSAALSNQDTCIEGFDGTNGIVKKLVAGSLSQVGSTVRELLT 158

Query: 110 MVHPSPSQWSNEGSSSNSGGKSRGGGGKSSGQFPHWFKREDRKLLLVNGVQADVVVAADG 169
           MVHP PS+    G S   GG +       S +FP W K EDRKLL  NGV  DVVVAADG
Sbjct: 159 MVHPPPSK----GKSKPIGGGTMTKKHSGSSKFPSWVKPEDRKLLQTNGVTPDVVVAADG 214

Query: 170 TGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNR 229
           TGNFT IMDAVLAA DYS KR+VIYIK+GVY ENVEIKKKKWN+MMVGDGIDAT+I+GNR
Sbjct: 215 TGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYLENVEIKKKKWNIMMVGDGIDATVITGNR 274

Query: 230 NFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQ 289
           +F+DGWTTFRSATFAVSGRGFIARDITF+NTAGPEKHQAVALRSDSDLSV++RCA++GYQ
Sbjct: 275 SFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ 334

Query: 290 DSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNE 349
           D+LYTHTMRQF+REC+I+GTVDFIFGDATA+FQNCQILAKKGL NQKNTITA GRKDPN+
Sbjct: 335 DTLYTHTMRQFYRECRITGTVDFIFGDATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQ 394

Query: 350 PTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNND 409
           PTGFSIQF NI+AD+DLLP++N+T TYLGRPWKLYSRTVFMQ+YMS+ IRP+GWLEWN +
Sbjct: 395 PTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDAIRPEGWLEWNGN 454

Query: 410 FALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKY 469
           FALDTLYYGEY NYGPG GL  R+ WPGYH+LNN+ QANNFTV+QF++GNLWLPSTGV +
Sbjct: 455 FALDTLYYGEYMNYGPGAGLGRRVKWPGYHVLNNSAQANNFTVSQFIQGNLWLPSTGVTF 514

Query: 470 TAGLQV 475
           +AGL V
Sbjct: 515 SAGLVV 520

Length = 520
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|239311 cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.45
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.83
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 98.78
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.76
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.53
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 98.47
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 98.37
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.33
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.71
KOG1777 625 consensus Putative Zn-finger protein [General func 97.13
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.08
PLN02793443 Probable polygalacturonase 96.52
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.39
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.33
PRK10531422 acyl-CoA thioesterase; Provisional 96.0
PLN02682369 pectinesterase family protein 95.97
PLN02218431 polygalacturonase ADPG 95.97
PLN03003456 Probable polygalacturonase At3g15720 95.49
PLN02773317 pectinesterase 95.41
PLN02671359 pectinesterase 95.31
PLN02480343 Probable pectinesterase 95.24
PLN03010409 polygalacturonase 95.24
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.98
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.73
PLN02155394 polygalacturonase 94.69
PLN02497331 probable pectinesterase 94.59
PLN02176340 putative pectinesterase 94.57
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.21
PLN02304379 probable pectinesterase 94.21
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.19
smart00656190 Amb_all Amb_all domain. 94.18
PLN02634359 probable pectinesterase 94.13
PLN02432293 putative pectinesterase 94.02
PLN02665366 pectinesterase family protein 93.97
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.66
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.64
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.32
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.08
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.92
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.91
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.81
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.78
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.7
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 92.63
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.59
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 92.59
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.42
PLN02916502 pectinesterase family protein 92.41
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.3
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.79
PLN02197588 pectinesterase 91.76
PLN02301548 pectinesterase/pectinesterase inhibitor 91.62
PLN02416541 probable pectinesterase/pectinesterase inhibitor 91.36
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.09
PLN02506537 putative pectinesterase/pectinesterase inhibitor 91.05
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 90.32
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 89.83
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 88.56
smart00722146 CASH Domain present in carbohydrate binding protei 87.73
PLN02314586 pectinesterase 87.64
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 87.45
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 86.7
PLN02188404 polygalacturonase/glycoside hydrolase family prote 86.05
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=5.8e-126  Score=998.39  Aligned_cols=400  Identities=45%  Similarity=0.790  Sum_probs=373.9

Q ss_pred             CChhhHHHHHHHHhhchhhhhhcccCCCCchhhhhhchhhhhHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 011879           59 DLSSDLRTWLSAALINQETCIDGFDGTNSIVKGVVSGSLNQISSSVQELLTMVHPSPSQWSNEGSSSNSGGKSRGGGGKS  138 (475)
Q Consensus        59 ~~~~Dv~TWLSAaLT~q~TClDGf~~~~~~~~~~~~~~l~~~~~l~SNaLAiv~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (475)
                      ...+|+|||||||||||+||+|||++  +.+++.|...|.++++|+||+|||+..+....           .|++  ...
T Consensus       106 ~~~~d~~twLSa~lt~q~TC~dg~~~--~~~~~~~~~~l~~~~~~~sn~La~~~~~~~~~-----------~~~~--~~~  170 (509)
T PLN02488        106 GSYENVHTWLSGVLTSYITCIDEIGE--GAYKRRVEPELEDLISRARVALAIFISISPRD-----------DTEL--KSV  170 (509)
T ss_pred             CcHHHHHHHHHHhHhchhhHhccccC--cchHHHHHHHHHHHHHHHHHHHHhhccccccc-----------cchh--hcc
Confidence            34689999999999999999999953  47888999999999999999999999754321           1221  112


Q ss_pred             CCCCCccccccccchhhccC--c--cceEEEcCCCCCCcchHHHHHHHcccCCCceEEEEEecCeeeeeEEEeeccccEE
Q 011879          139 SGQFPHWFKREDRKLLLVNG--V--QADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLM  214 (475)
Q Consensus       139 ~~~~p~w~~~~~~~ll~~~~--~--~~~~vVa~dGsg~f~TIq~AI~aap~~~~~r~vI~Ik~G~Y~E~V~I~k~k~nIt  214 (475)
                      .++||+|+++.|||||+...  +  +++++|++||+|+|+||||||+++|+++++|++||||||+|+|+|.|+++|+||+
T Consensus       171 ~~~~P~W~~~~dR~lL~~~~~~~~~~~~vvVa~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~nIt  250 (509)
T PLN02488        171 VPNGPSWLSNVDKKYLYLNPEVLKKIADVVVAKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEIVRIGSTKPNLT  250 (509)
T ss_pred             cCCCCCCCCccchhhhhcCcccccccccEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeEEEEEecCCCccEE
Confidence            35799999999999998642  4  5899999999999999999999999998899999999999999999999999999


Q ss_pred             EEeeCCCceeeeCCccccCCccccCceEEEEEcCcEEEEEeEEEeCCCCCCCceEEEEEcCCceEEEeeeEeeccceeee
Q 011879          215 MVGDGIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYT  294 (475)
Q Consensus       215 L~G~g~~~tiI~g~~~~~dg~~t~~sat~~v~~~~f~~~~lt~~Ntag~~~~QAvAL~v~~d~~~f~nC~~~g~QDTLy~  294 (475)
                      |+|+|+++|||+++++..+|.+|++||||.|.|++|+++||||+|++|+.++||||||+++|+++||+|+|+|||||||+
T Consensus       251 liGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~  330 (509)
T PLN02488        251 LIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYP  330 (509)
T ss_pred             EEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceee
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeecEEeceeeeEeccceeeeeeeEEEEccCCCCCceEEEecCCCCCCCCceEEEEeeEEeecCCCCcccCCcc
Q 011879          295 HTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTE  374 (475)
Q Consensus       295 ~~grqyy~~C~I~G~vDFIfG~a~avf~~C~I~~~~~~~~~~~~ItA~gr~~~~~~~Gfvf~nC~it~~~~~~~~~~~~~  374 (475)
                      |++||||++|+|+|+||||||+|+++||+|+|+++++.+++.++||||+|+++++++||||+||+|++++++.+...+.+
T Consensus       331 ~~~RqyyrdC~I~GtVDFIFG~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~  410 (509)
T PLN02488        331 HRDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVK  410 (509)
T ss_pred             CCCCEEEEeeEEeeccceEecceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccc
Confidence            99999999999999999999999999999999999988889999999999999999999999999999998776666678


Q ss_pred             eEEeccccCcCcEEEEeccCCCcccCCCCcCCCCCCCCcceEEEEeeeecCCCCCCCcccCCCcccCCCHHHHhcchhhc
Q 011879          375 TYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQ  454 (475)
Q Consensus       375 ~yLGRPW~~~srvvf~~s~i~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~s~Rv~w~g~~~~~~~~eA~~ft~~~  454 (475)
                      +||||||++|||||||+|+|+++|+|+||.+|+++++++|++|+||+|+||||++++||+|+|+|++++++||.+||+++
T Consensus       411 ~YLGRPW~~ySrvVf~~s~i~~~I~P~GW~~W~~~~~~~t~~yaEY~n~GPGA~~s~RV~W~g~~~l~~~~eA~~ft~~~  490 (509)
T PLN02488        411 TYLGRPWRKYSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLYYGEYQNRGPGAVTSKRVKWTGFRVMTDPKEATKFTVAK  490 (509)
T ss_pred             eeecCCCCCCccEEEEeccCCCeecccccCccCCCCCCCceEEEEecccCCCCCcCCCcccccccccCCHHHHHhhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             cccCCCCCCCCCCcccCCC
Q 011879          455 FLEGNLWLPSTGVKYTAGL  473 (475)
Q Consensus       455 fi~g~~W~p~~~vp~~~g~  473 (475)
                      ||+|+.|+|.+||||++||
T Consensus       491 fi~G~~Wl~~tgvp~~~gl  509 (509)
T PLN02488        491 LLDGESWLKASGVPYEKGL  509 (509)
T ss_pred             eeCCCCcCCCCCCCcCCCC
Confidence            9999999999999999997

>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-105
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 8e-96
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-23
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 4e-23
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-22
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-19
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/305 (57%), Positives = 221/305 (72%)
Query: 169 GTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGN 228
           GTG++  + +AV AA D S  R+VIY+KRG YKENVE+   K NLM+VGDG+ AT I+G+
Sbjct: 11  GTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGS 70
Query: 229 RNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGY 288
            N +DG TTFRSAT A  G+GFI +DI  +NTAGP K QAVALR  +D+SV  RC I  Y
Sbjct: 71  LNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAY 130
Query: 289 QDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNTITAHGRKDPN 348
           QD+LY H+ RQF+R+  ++GTVDFIFG+A  +FQ CQ++A+K    Q+N +TA GR DPN
Sbjct: 131 QDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPN 190
Query: 349 EPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIRPKGWLEWNN 408
           + TG SIQFCNI A SDL P +    TYLGRPWK YSRTV M+SY+  +I P GW EW+ 
Sbjct: 191 QATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDG 250
Query: 409 DFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVK 468
           DFAL TLYYGE+ N GPG G + R+ WPGYH++ +  +A  FTVA+ ++G  WL STGV 
Sbjct: 251 DFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVA 310
Query: 469 YTAGL 473
           Y  GL
Sbjct: 311 YVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-179
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-177
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-132
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-130
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-108
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 3e-06
1x91_A153 Invertase/pectin methylesterase inhibitor family p 8e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  503 bits (1296), Expect = e-179
 Identities = 180/315 (57%), Positives = 228/315 (72%)

Query: 159 VQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGD 218
           + A+ VVA DGTG++  + +AV AA D S  R+VIY+KRG YKENVE+   K NLM+VGD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 219 GIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLS 278
           G+ AT I+G+ N +DG TTFRSAT A  G+GFI +DI  +NTAGP K QAVALR  +D+S
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 279 VYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNT 338
           V  RC I  YQD+LY H+ RQF+R+  ++GTVDFIFG+A  +FQ CQ++A+K    Q+N 
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180

Query: 339 ITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVI 398
           +TA GR DPN+ TG SIQFCNI A SDL P +    TYLGRPWK YSRTV M+SY+  +I
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240

Query: 399 RPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEG 458
            P GW EW+ DFAL TLYYGE+ N GPG G + R+ WPGYH++ +  +A  FTVA+ ++G
Sbjct: 241 NPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQG 300

Query: 459 NLWLPSTGVKYTAGL 473
             WL STGV Y  GL
Sbjct: 301 GSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.66
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.46
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.03
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 98.96
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.76
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 98.66
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.31
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.88
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.45
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.35
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.33
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.31
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.28
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.26
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.11
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.09
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.05
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.88
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.75
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.73
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.68
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.66
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.62
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.62
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.56
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.51
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.21
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.16
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.08
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.78
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.75
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.63
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.37
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.28
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.68
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 93.49
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.76
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 91.99
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 88.1
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 85.34
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 85.19
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 84.91
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 83.67
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 82.22
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 81.27
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 80.64
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 80.33
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.1e-97  Score=754.91  Aligned_cols=315  Identities=57%  Similarity=1.003  Sum_probs=303.0

Q ss_pred             cceEEEcCCCCCCcchHHHHHHHcccCCCceEEEEEecCeeeeeEEEeeccccEEEEeeCCCceeeeCCccccCCccccC
Q 011879          160 QADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGWTTFR  239 (475)
Q Consensus       160 ~~~~vVa~dGsg~f~TIq~AI~aap~~~~~r~vI~Ik~G~Y~E~V~I~k~k~nItL~G~g~~~tiI~g~~~~~dg~~t~~  239 (475)
                      +++++|++||+|+|+|||+||++||+++++|++|+|+||+|+|+|.|++.|++|||+|+++++|+|+++.+..+|.+|++
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            57899999999999999999999999999999999999999999999998999999999999999999998888999999


Q ss_pred             ceEEEEEcCcEEEEEeEEEeCCCCCCCceEEEEEcCCceEEEeeeEeeccceeeecccceeeeecEEeceeeeEecccee
Q 011879          240 SATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATA  319 (475)
Q Consensus       240 sat~~v~~~~f~~~~lt~~Ntag~~~~QAvAL~v~~d~~~f~nC~~~g~QDTLy~~~grqyy~~C~I~G~vDFIfG~a~a  319 (475)
                      ++||.|.+++|+++||||+|++++.++|||||++++|+++|+||+|+|||||||++++||||++|+|+|+||||||+|++
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEEEEccCCCCCceEEEecCCCCCCCCceEEEEeeEEeecCCCCcccCCcceEEeccccCcCcEEEEeccCCCccc
Q 011879          320 MFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVIR  399 (475)
Q Consensus       320 vf~~C~I~~~~~~~~~~~~ItA~gr~~~~~~~Gfvf~nC~it~~~~~~~~~~~~~~yLGRPW~~~srvvf~~s~i~~~I~  399 (475)
                      +||+|+|+++++.+++.++||||+|+++++++||||+||+|++++++.+.....++||||||++|+|||||+|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            99999999998877788999999999999999999999999999876554455689999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCcceEEEEeeeecCCCCCCCcccCCCcccCCCHHHHhcchhhccccCCCCCCCCCCcccCCCC
Q 011879          400 PKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGLQ  474 (475)
Q Consensus       400 p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~s~Rv~w~g~~~~~~~~eA~~ft~~~fi~g~~W~p~~~vp~~~g~~  474 (475)
                      |+||.+|++.+++++++|+||+|+||||++++||+|+++|++++++||++||+++||+|++|+|.+||||.+||.
T Consensus       242 p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             ccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            999999999989999999999999999999999999999888888999999999999999999999999999984
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 475
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-148
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-94
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 4e-05
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 7e-04
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 8e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  423 bits (1088), Expect = e-148
 Identities = 172/315 (54%), Positives = 220/315 (69%)

Query: 159 VQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGD 218
           V  +VVVAADG+G++  + +AV AA + S  R+VI IK GVY+ENV++ KKK N+M +GD
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGD 64

Query: 219 GIDATIISGNRNFMDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLS 278
           G  +TII+ ++N  DG TTF SAT A  G GF+ARDITF+NTAG  KHQAVALR  SDLS
Sbjct: 65  GRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS 124

Query: 279 VYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAMFQNCQILAKKGLDNQKNT 338
            ++RC I  YQDSLY H+ RQFF  C I+GTVDFIFG+A  + Q+C I A++    QKN 
Sbjct: 125 AFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNM 184

Query: 339 ITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMSNVI 398
           +TA GR DPN+ TG  IQ   I A SDL P  +S  TYLGRPWK YSRTV MQS ++NVI
Sbjct: 185 VTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVI 244

Query: 399 RPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEG 458
            P GW  W+ +FALDTLYYGEY+N G G   + R+TW G+ ++ ++ +A  FT   F+ G
Sbjct: 245 NPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAG 304

Query: 459 NLWLPSTGVKYTAGL 473
             WL +T   ++ GL
Sbjct: 305 GSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.03
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.74
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 98.43
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 98.26
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.8
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.32
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.05
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.83
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.35
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.13
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.99
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.81
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.76
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.42
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.41
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.93
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 94.81
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.59
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 93.35
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 89.36
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 87.59
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 81.24
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 81.04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5.8e-101  Score=775.51  Aligned_cols=318  Identities=54%  Similarity=0.924  Sum_probs=307.0

Q ss_pred             ccCccceEEEcCCCCCCcchHHHHHHHcccCCCceEEEEEecCeeeeeEEEeeccccEEEEeeCCCceeeeCCccccCCc
Q 011879          156 VNGVQADVVVAADGTGNFTKIMDAVLAAEDYSMKRFVIYIKRGVYKENVEIKKKKWNLMMVGDGIDATIISGNRNFMDGW  235 (475)
Q Consensus       156 ~~~~~~~~vVa~dGsg~f~TIq~AI~aap~~~~~r~vI~Ik~G~Y~E~V~I~k~k~nItL~G~g~~~tiI~g~~~~~dg~  235 (475)
                      +..+.||+||++||+|+|+|||+||+++|.++++|++|+|+||+|+|+|.|+++|++|+|+|+|++.|+|+++.+..++.
T Consensus         2 ~~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~   81 (319)
T d1gq8a_           2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGS   81 (319)
T ss_dssp             CCSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             CCcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCC
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             cccCceEEEEEcCcEEEEEeEEEeCCCCCCCceEEEEEcCCceEEEeeeEeeccceeeecccceeeeecEEeceeeeEec
Q 011879          236 TTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVYFRCAIKGYQDSLYTHTMRQFFRECKISGTVDFIFG  315 (475)
Q Consensus       236 ~t~~sat~~v~~~~f~~~~lt~~Ntag~~~~QAvAL~v~~d~~~f~nC~~~g~QDTLy~~~grqyy~~C~I~G~vDFIfG  315 (475)
                      +|+.++||.|.+++|+++||||+|++|+.++|||||++++||++||+|+|+|||||||++++||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence            99999999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeeeEEEEccCCCCCceEEEecCCCCCCCCceEEEEeeEEeecCCCCcccCCcceEEeccccCcCcEEEEeccCC
Q 011879          316 DATAMFQNCQILAKKGLDNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLPFVNSTETYLGRPWKLYSRTVFMQSYMS  395 (475)
Q Consensus       316 ~a~avf~~C~I~~~~~~~~~~~~ItA~gr~~~~~~~Gfvf~nC~it~~~~~~~~~~~~~~yLGRPW~~~srvvf~~s~i~  395 (475)
                      +++++||+|+|+++++..++.++||||+|+++.+++||||++|+|+++++..+.....++||||||++|+||||++|+|+
T Consensus       162 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~  241 (319)
T d1gq8a_         162 NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT  241 (319)
T ss_dssp             SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEEC
T ss_pred             CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccc
Confidence            99999999999999887788899999999999999999999999999998776666788999999999999999999999


Q ss_pred             CcccCCCCcCCCCCCCCcceEEEEeeeecCCCCCCCcccCCCcccCCCHHHHhcchhhccccCCCCCCCCCCcccCCC
Q 011879          396 NVIRPKGWLEWNNDFALDTLYYGEYKNYGPGGGLATRITWPGYHILNNAVQANNFTVAQFLEGNLWLPSTGVKYTAGL  473 (475)
Q Consensus       396 ~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~s~Rv~w~g~~~~~~~~eA~~ft~~~fi~g~~W~p~~~vp~~~g~  473 (475)
                      +||+|+||.+|++.++.++++|+||+|+||||++++||+|++++.+++++||++||.++||+|++|+|.+||||.+||
T Consensus       242 ~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         242 NVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            999999999999988999999999999999999999999999988889999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure