Query 011880
Match_columns 475
No_of_seqs 310 out of 1394
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 1.1E-27 2.5E-32 263.1 20.3 116 100-215 216-331 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 1.3E-27 2.9E-32 211.8 12.9 108 105-214 4-112 (119)
3 cd05497 Bromo_Brdt_I_like Brom 99.9 1.7E-27 3.6E-32 207.4 12.4 103 106-208 5-107 (107)
4 cd05495 Bromo_cbp_like Bromodo 99.9 2.5E-27 5.4E-32 206.6 13.0 105 105-209 2-107 (108)
5 cd05505 Bromo_WSTF_like Bromod 99.9 1.4E-26 3.1E-31 198.3 10.9 95 108-204 2-96 (97)
6 cd05507 Bromo_brd8_like Bromod 99.9 4.1E-26 8.8E-31 197.5 12.2 102 105-208 2-103 (104)
7 cd05500 Bromo_BDF1_2_I Bromodo 99.9 6.2E-26 1.3E-30 195.7 12.2 102 103-204 1-102 (103)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 4.5E-26 9.8E-31 194.7 10.9 96 108-205 2-97 (97)
9 cd05506 Bromo_plant1 Bromodoma 99.9 5.8E-26 1.3E-30 193.9 11.0 98 108-205 2-99 (99)
10 cd05502 Bromo_tif1_like Bromod 99.9 1.1E-25 2.4E-30 196.0 12.7 105 103-210 1-108 (109)
11 cd05498 Bromo_Brdt_II_like Bro 99.9 7.8E-26 1.7E-30 194.2 10.9 98 108-205 2-102 (102)
12 cd05504 Bromo_Acf1_like Bromod 99.9 1.5E-25 3.3E-30 197.4 12.2 101 106-208 12-112 (115)
13 cd05508 Bromo_RACK7 Bromodomai 99.9 1.8E-25 3.9E-30 192.3 11.4 96 106-204 3-98 (99)
14 cd05510 Bromo_SPT7_like Bromod 99.9 2.1E-25 4.6E-30 195.9 11.7 104 104-209 5-110 (112)
15 cd05499 Bromo_BDF1_2_II Bromod 99.9 2.1E-25 4.5E-30 191.9 11.2 98 108-205 2-102 (102)
16 cd05509 Bromo_gcn5_like Bromod 99.9 3E-25 6.4E-30 190.3 11.8 100 107-208 2-101 (101)
17 cd05501 Bromo_SP100C_like Brom 99.9 1.2E-24 2.7E-29 188.1 12.6 97 108-209 4-100 (102)
18 cd05511 Bromo_TFIID Bromodomai 99.9 2E-24 4.3E-29 189.4 11.9 103 109-213 3-105 (112)
19 cd05528 Bromo_AAA Bromodomain; 99.9 2.1E-24 4.6E-29 189.5 11.6 104 105-210 2-109 (112)
20 cd05513 Bromo_brd7_like Bromod 99.9 2.2E-24 4.8E-29 185.3 10.9 94 107-202 2-95 (98)
21 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2E-24 4.4E-29 187.9 10.8 100 107-208 2-107 (107)
22 cd05512 Bromo_brd1_like Bromod 99.9 3.8E-24 8.2E-29 183.7 11.0 93 107-201 2-94 (98)
23 cd05515 Bromo_polybromo_V Brom 99.9 2.4E-23 5.1E-28 180.6 10.2 97 108-206 2-104 (105)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 3.1E-23 6.7E-28 179.0 10.2 96 108-205 2-103 (103)
25 cd05529 Bromo_WDR9_I_like Brom 99.9 9.7E-23 2.1E-27 182.8 13.2 105 102-207 20-127 (128)
26 cd05524 Bromo_polybromo_I Brom 99.9 6.6E-23 1.4E-27 180.2 11.0 102 107-210 3-110 (113)
27 smart00297 BROMO bromo domain. 99.9 1.1E-22 2.5E-27 173.9 12.0 103 104-208 5-107 (107)
28 cd05520 Bromo_polybromo_III Br 99.9 9.3E-23 2E-27 176.5 10.2 92 111-204 5-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 1.3E-22 2.7E-27 175.7 9.9 94 108-203 2-101 (103)
30 cd05518 Bromo_polybromo_IV Bro 99.9 2E-22 4.3E-27 174.5 10.0 94 109-204 3-102 (103)
31 cd05525 Bromo_ASH1 Bromodomain 99.9 3.1E-22 6.7E-27 174.2 11.1 96 107-204 3-104 (106)
32 PF00439 Bromodomain: Bromodom 99.9 1.6E-21 3.5E-26 159.9 9.3 84 111-196 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.9 2.9E-21 6.2E-26 159.8 9.9 96 108-205 2-99 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 3.9E-21 8.5E-26 166.5 10.6 94 109-204 4-103 (104)
35 cd05492 Bromo_ZMYND11 Bromodom 99.8 8.4E-21 1.8E-25 166.1 11.9 99 111-209 5-107 (109)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1E-20 2.2E-25 164.7 11.0 96 107-206 2-103 (106)
37 cd05526 Bromo_polybromo_VI Bro 99.7 1.1E-17 2.4E-22 146.6 10.6 100 106-209 3-108 (110)
38 COG5076 Transcription factor i 99.7 1.4E-17 3E-22 172.8 11.9 105 109-215 145-255 (371)
39 KOG1245 Chromatin remodeling c 99.7 1.3E-17 2.8E-22 195.2 7.6 96 111-209 1306-1401(1404)
40 KOG1472 Histone acetyltransfer 99.5 2.1E-14 4.6E-19 157.9 6.8 103 106-210 606-708 (720)
41 KOG0008 Transcription initiati 99.3 3.9E-13 8.5E-18 153.3 1.5 180 30-211 1301-1485(1563)
42 cd05494 Bromodomain_1 Bromodom 99.3 1E-12 2.2E-17 116.1 3.7 80 107-186 4-90 (114)
43 KOG0008 Transcription initiati 99.2 1.6E-11 3.4E-16 140.5 7.5 145 108-254 1263-1412(1563)
44 KOG0955 PHD finger protein BR1 99.1 2.2E-10 4.8E-15 131.2 7.7 105 107-213 566-670 (1051)
45 KOG1827 Chromatin remodeling c 99.0 1.7E-09 3.7E-14 118.1 9.8 103 102-206 48-156 (629)
46 cd05491 Bromo_TBP7_like Bromod 99.0 1.1E-09 2.3E-14 97.4 6.7 41 147-187 63-103 (119)
47 KOG0386 Chromatin remodeling c 98.9 2.2E-09 4.8E-14 121.0 7.7 100 109-210 1027-1132(1157)
48 KOG1474 Transcription initiati 98.6 7.5E-09 1.6E-13 115.0 0.3 94 116-209 2-95 (640)
49 KOG1472 Histone acetyltransfer 98.5 7.6E-08 1.6E-12 106.9 5.9 104 103-215 290-412 (720)
50 KOG1828 IRF-2-binding protein 98.2 1.7E-07 3.7E-12 97.1 -0.6 96 111-208 24-119 (418)
51 KOG1828 IRF-2-binding protein 98.1 1.9E-06 4.1E-11 89.5 3.8 84 113-199 215-298 (418)
52 COG5076 Transcription factor i 97.5 8.8E-06 1.9E-10 85.0 -2.5 155 49-208 209-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.8 0.0024 5.2E-08 58.2 5.6 70 148-217 59-128 (131)
54 KOG0644 Uncharacterized conser 89.6 0.25 5.3E-06 56.7 3.0 60 145-204 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 88.0 0.26 5.5E-06 58.2 1.8 64 124-187 533-601 (1080)
56 KOG1827 Chromatin remodeling c 61.0 1.1 2.4E-05 50.3 -3.0 75 125-201 214-288 (629)
57 KOG0644 Uncharacterized conser 51.6 6.5 0.00014 45.7 1.0 71 128-201 87-187 (1113)
58 PF14372 DUF4413: Domain of un 50.2 58 0.0013 28.0 6.4 51 160-210 3-53 (101)
59 PF09802 Sec66: Preprotein tra 35.1 84 0.0018 30.7 5.6 39 420-458 67-112 (190)
60 TIGR02606 antidote_CC2985 puta 33.2 71 0.0015 25.9 4.1 27 152-178 12-38 (69)
61 PRK11546 zraP zinc resistance 28.6 2.4E+02 0.0053 26.4 7.2 60 408-469 32-100 (143)
62 PF03693 RHH_2: Uncharacterise 21.0 1.2E+02 0.0027 25.3 3.5 27 152-178 15-41 (80)
63 PF10872 DUF2740: Protein of u 20.3 2.9E+02 0.0063 20.7 4.8 42 418-473 2-44 (48)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.95 E-value=1.1e-27 Score=263.10 Aligned_cols=116 Identities=46% Similarity=0.831 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 011880 100 RPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 100 r~kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (475)
..++...++++|..||..|+.|.++|||..|||+.++++||||+||++||||+||++||..+.|.++.||.+||||||.|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhcc
Q 011880 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSE 215 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~~ 215 (475)
|++||+++++||.||..|+++|+.+|..++..+...
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~ 331 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEES 331 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999987665543
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=211.84 Aligned_cols=108 Identities=36% Similarity=0.564 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
..|...|..||+.|++|+.+++|++||++. .+||||++|++||||+||++||..+.|.++.+|.+||+|||.||+.||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 579999999999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 011880 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (475)
Q Consensus 185 ~p-~S~I~k~A~~Lek~Fek~~kel~~k~~~ 214 (475)
++ ++.||.+|..|+..|+++++.+...|..
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~ 112 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWKS 112 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 8999999999999999999999998853
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.7e-27 Score=207.40 Aligned_cols=103 Identities=43% Similarity=0.727 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
++.-.+..||..|++++.+++|++|||+.+.++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44455678899999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 011880 186 PENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel 208 (475)
++|.++.+|..|++.|++++++|
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998864
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.5e-27 Score=206.56 Aligned_cols=105 Identities=35% Similarity=0.606 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 011880 105 RGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~-~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (475)
+++++.|..+|+.|+++ +.+|+|+.||++...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999 99999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 184 NPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 184 N~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
|+++|.+|.+|..|++.|++.+..++
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=198.31 Aligned_cols=95 Identities=29% Similarity=0.473 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 011880 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (475)
Q Consensus 108 ~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~ 187 (475)
.+.|..||+.|++++.+++|+.||++. .+||||++|++||||+||++||+.+.|.++++|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 468999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 011880 188 NNVHKMAQELNNLFDIK 204 (475)
Q Consensus 188 S~I~k~A~~Lek~Fek~ 204 (475)
+.|+.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.1e-26 Score=197.52 Aligned_cols=102 Identities=30% Similarity=0.484 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
+.|.+.|..|++.|+.|+.+++|.+||++. .+|+||++|++||||+||++||+++.|.++.||.+||+|||.||+.||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 185 PPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
++++.+|.+|..|++.|.+.+..+
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999887653
No 7
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.2e-26 Score=195.75 Aligned_cols=102 Identities=38% Similarity=0.625 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 103 l~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
|++.+.+.|..||+.|++++.+++|..||+|.+.++||||++|++||||++|++||.++.|.++.+|..||+|||.||+.
T Consensus 1 ~t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLT 80 (103)
T ss_pred CCHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 011880 183 YNPPENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~ 204 (475)
||+++|.++.+|..|++.|++.
T Consensus 81 yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 81 FNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.5e-26 Score=194.72 Aligned_cols=96 Identities=32% Similarity=0.704 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 011880 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (475)
Q Consensus 108 ~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~ 187 (475)
+..|..||..|+.++.+++|+.||++. .+|+||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 468999999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011880 188 NNVHKMAQELNNLFDIKW 205 (475)
Q Consensus 188 S~I~k~A~~Lek~Fek~~ 205 (475)
+.++.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
No 9
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.8e-26 Score=193.85 Aligned_cols=98 Identities=60% Similarity=1.090 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 011880 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (475)
Q Consensus 108 ~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~ 187 (475)
++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011880 188 NNVHKMAQELNNLFDIKW 205 (475)
Q Consensus 188 S~I~k~A~~Lek~Fek~~ 205 (475)
|.++.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999886
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=196.04 Aligned_cols=105 Identities=33% Similarity=0.635 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHH
Q 011880 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 103 l~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~---~~Y~S~~EF~~DvrLIf~N 179 (475)
|+...++.|..||..|++++.+++|+.||++ .+|+||++|++||||+||++||+. +.|.++++|.+||+|||.|
T Consensus 1 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~N 77 (109)
T cd05502 1 LSPIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKN 77 (109)
T ss_pred CCHHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999997 689999999999999999999998 5999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
|+.||++++.++.+|..|++.|++.+.++++
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999998754
No 11
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.8e-26 Score=194.21 Aligned_cols=98 Identities=48% Similarity=0.878 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 108 THQCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 108 ~~~c~~IL~~L~~~---~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
++.|..||+.|+.+ +.+++|+.||++...++||||++|++||||++|++||..+.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 889999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 011880 185 PPENNVHKMAQELNNLFDIKW 205 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~ 205 (475)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 12
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.5e-25 Score=197.42 Aligned_cols=101 Identities=38% Similarity=0.734 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.....|..||..|+.++.+++|+.||++. .+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||+.||+
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~ 89 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNP 89 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45688999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Q 011880 186 PENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel 208 (475)
+++.+|.+|..|+++|+++++.+
T Consensus 90 ~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 90 EHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886
No 13
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.8e-25 Score=192.35 Aligned_cols=96 Identities=26% Similarity=0.521 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
++...+..++..|+ |+.+|+|.+||++. .+||||.+|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45677888889999 99999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011880 186 PENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~ 204 (475)
++|.++.+|..|.+.|+..
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998864
No 14
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.1e-25 Score=195.86 Aligned_cols=104 Identities=28% Similarity=0.431 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 104 DRGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~-~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
..++...|..||..|+.+ +.+++|+.||++. ++||||++|++||||+||++||+++.|.++++|.+||+|||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 457889999999999999 9999999999976 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCC-HHHHHHHHHHHHHHHHHHHhH
Q 011880 183 YNPPEN-NVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 183 YN~p~S-~I~k~A~~Lek~Fek~~kel~ 209 (475)
||++++ .++.+|..|++.|+..+..+.
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999865 688999999999999998874
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.1e-25 Score=191.87 Aligned_cols=98 Identities=46% Similarity=0.851 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 108 THQCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 108 ~~~c~~IL~~L~~~---~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
.+.|..||..|+++ +.+++|+.||++.+..+||||++|++||||++|++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999984 679999999999877999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 011880 185 PPENNVHKMAQELNNLFDIKW 205 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~ 205 (475)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3e-25 Score=190.31 Aligned_cols=100 Identities=41% Similarity=0.712 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
++.+|..||+.|++|+.+++|+.||++. .+|+||++|++||||+||++||..+.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 011880 187 ENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fek~~kel 208 (475)
++.++.+|..|+..|++.++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999998864
No 17
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.2e-24 Score=188.10 Aligned_cols=97 Identities=28% Similarity=0.463 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 011880 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (475)
Q Consensus 108 ~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~ 187 (475)
+..|+.||..|+.++.+++|..+ |. .+||||++|++||||+||++||.++.|.++++|.+||+|||.||+.||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46799999999999999999763 43 789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhH
Q 011880 188 NNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 188 S~I~k~A~~Lek~Fek~~kel~ 209 (475)
.++.+|..|++.|+++|++++
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 18
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2e-24 Score=189.45 Aligned_cols=103 Identities=33% Similarity=0.631 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 011880 109 HQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEN 188 (475)
Q Consensus 109 ~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S 188 (475)
-.+..|+..|+.++.+++|+.||++. .+|+||++|++||||++|++||.++.|.++++|.+||+|||.||+.||++++
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35788999999999999999999987 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 189 NVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 189 ~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
.++.+|..|...|+..+.++.+++.
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~~ 105 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKLT 105 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999987764
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=2.1e-24 Score=189.45 Aligned_cols=104 Identities=31% Similarity=0.501 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
+++...|..|++.|+.++.+++|.+||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 356778999999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHHHhHH
Q 011880 185 PPE----NNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 185 ~p~----S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
+++ +.|+.+|..|++.|.+++..+.+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 995 69999999999999999987653
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.2e-24 Score=185.28 Aligned_cols=94 Identities=31% Similarity=0.425 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
+...|..||+.|+.++.+++|+.||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4578899999999999999999999975 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 011880 187 ENNVHKMAQELNNLFD 202 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fe 202 (475)
++.+|++|..|...-.
T Consensus 80 ~s~~~~~A~~L~~~~~ 95 (98)
T cd05513 80 DTIYYKAAKKLLHSGM 95 (98)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999976543
No 21
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2e-24 Score=187.90 Aligned_cols=100 Identities=21% Similarity=0.376 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011880 107 VTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~------s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (475)
+.+.|..||+.|+.+.. +++|.+||+.. .+||||++|++||||++|++||..+.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999998865 89999998865 89999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 181 MLYNPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 181 ~~YN~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
+.||+++|.||.+|..|++.|++.++.+
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988753
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.8e-24 Score=183.65 Aligned_cols=93 Identities=27% Similarity=0.478 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
+...|..+|+.|+.++.+++|.+||++. .+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 011880 187 ENNVHKMAQELNNLF 201 (475)
Q Consensus 187 ~S~I~k~A~~Lek~F 201 (475)
++.+|++|..|++.-
T Consensus 80 ~s~~~~~A~~l~~~~ 94 (98)
T cd05512 80 DTIFYRAAVRLRDQG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998754
No 23
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.4e-23 Score=180.57 Aligned_cols=97 Identities=25% Similarity=0.466 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 108 ~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
+++|..|++.|..+ +.+++|+.||+.. ++||||++|++||||++|++||.++.|.++++|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888888755 5689999998865 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 011880 182 LYNPPENNVHKMAQELNNLFDIKWK 206 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~k 206 (475)
.||+++|.+|.+|..|++.|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988754
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.1e-23 Score=178.96 Aligned_cols=96 Identities=27% Similarity=0.431 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 108 ~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
++.|..|++.|+++ +.+++|++||+.. .+||||++|++||||++|++||+.+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKK--LYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCC--CCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999844 5689999998855 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 011880 182 LYNPPENNVHKMAQELNNLFDIKW 205 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~ 205 (475)
.||++++.+|.+|..|++.|+.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 25
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=9.7e-23 Score=182.76 Aligned_cols=105 Identities=29% Similarity=0.414 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHHH---cCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 102 KMDRGVTHQCSVILKSLM---MHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~---~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
.+...+...|..+|..|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++++|..||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 467788899999999999 8999999999999764 789999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 011880 179 NAMLYNPPENNVHKMAQELNNLFDIKWKS 207 (475)
Q Consensus 179 NA~~YN~p~S~I~k~A~~Lek~Fek~~ke 207 (475)
||+.||++++.++.+|..|++.|...+..
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988764
No 26
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=6.6e-23 Score=180.19 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011880 107 VTHQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (475)
..+.|..|++.|+++ +.+.+|..+++ +..+||||++|++||||+||++||..+.|.++.+|.+||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999965 44568999766 4589999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 181 MLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 181 ~~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
+.||++++.+|.+|..|++.|++.++++..
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999888753
No 27
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=1.1e-22 Score=173.88 Aligned_cols=103 Identities=43% Similarity=0.738 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 011880 104 DRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (475)
...+...|..|+..+.+++.+++|..||++. .+|+||.+|++||||++|++||+++.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999976 68999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 184 NPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 184 N~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
|++++.++.+|..|++.|++.|+++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998763
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=9.3e-23 Score=176.53 Aligned_cols=92 Identities=27% Similarity=0.426 Sum_probs=83.2
Q ss_pred HHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 111 CSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 111 c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
+..|++.|+.+ +.+++|++||+.. .+||||++|++||||++|++||+.+.|.++.+|..||+|||.||+.||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~--~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKR--KYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcc--cCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44556666544 5688999998854 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 011880 185 PPENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~ 204 (475)
++++.+|.+|..|+++|+++
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.3e-22 Score=175.69 Aligned_cols=94 Identities=24% Similarity=0.471 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 108 ~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
++.|..|++.|+.+ +.+++|+++++. .++||||++|++||||++|++||..+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~--~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSK--VLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCC--CCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 46788889888866 447999998775 4899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 011880 182 LYNPPENNVHKMAQELNNLFDI 203 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek 203 (475)
.||+++|.+|.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=2e-22 Score=174.53 Aligned_cols=94 Identities=26% Similarity=0.421 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 109 HQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 109 ~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
+++..|++.|... +.+.+|+.+|+.. .+||||++|++||||+||++||..+.|.++.+|.+||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKK--DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcc--cCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455666666543 6688999988855 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 011880 183 YNPPENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~ 204 (475)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 31
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.1e-22 Score=174.22 Aligned_cols=96 Identities=20% Similarity=0.319 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011880 107 VTHQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (475)
+...|..|++.|..+ ..+++|+++++ +..+||||++|++||||++|++||..+.|.++++|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 456678888888765 45799999866 4589999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 011880 181 MLYNPPENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 181 ~~YN~p~S~I~k~A~~Lek~Fek~ 204 (475)
+.||+++|.+|.+|..|++.|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=1.6e-21 Score=159.94 Aligned_cols=84 Identities=48% Similarity=0.882 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 011880 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (475)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I 190 (475)
|..||+.|++++.+++|..||++. .+|+|+++|++||||.+|++||++|.|.++.+|.+||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 889999999999999999999766 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 011880 191 HKMAQE 196 (475)
Q Consensus 191 ~k~A~~ 196 (475)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.85 E-value=2.9e-21 Score=159.84 Aligned_cols=96 Identities=40% Similarity=0.628 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 108 THQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 108 ~~~c~~IL~~L~~~--~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
...|..+++.|..+ +.+++|..||++. .+|+||.+|++||||.+|+.||..+.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999999 9999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 011880 186 PENNVHKMAQELNNLFDIKW 205 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~ 205 (475)
+++.++.+|..|+..|++.+
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.9e-21 Score=166.53 Aligned_cols=94 Identities=30% Similarity=0.436 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 109 HQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 109 ~~c~~IL~~L~~------~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
.++..|++.|+. ++.+++|..+|+.. .+||||++|++||||++|++||..+.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 345556666654 46799999998865 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 011880 183 YNPPENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~ 204 (475)
||++++.+|.+|..|++.|+.+
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=8.4e-21 Score=166.14 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=89.1
Q ss_pred HHHHHHHHHc-CCCCCCCCCcCC---CCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 111 CSVILKSLMM-HPAGWVFNRPVD---PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 111 c~~IL~~L~~-~~~s~pF~~PVd---p~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
+..++..+.. .+.+.+|+.||. +.+..+|+||++|++||||+||++||+++.|.+++||.+||.|||+||..||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4556667766 577899999997 444459999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhH
Q 011880 187 ENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
+|.++.+|..|.......+.+|.
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888763
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1e-20 Score=164.74 Aligned_cols=96 Identities=29% Similarity=0.391 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011880 107 VTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (475)
+.++|..|++.|+... .+.+|..+++ +..+||||++|++||||++|++||.. |.++.+|.+||+|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 3567888898888663 3568997555 45899999999999999999999998 999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 011880 181 MLYNPPENNVHKMAQELNNLFDIKWK 206 (475)
Q Consensus 181 ~~YN~p~S~I~k~A~~Lek~Fek~~k 206 (475)
+.||++++.+|.+|..|++.|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998764
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.74 E-value=1.1e-17 Score=146.63 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 011880 106 GVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (475)
.++..+..|+..+++|. .+.+|++... ..|+||.+|+.||||++|++||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 35677889999999884 4778888433 3588999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
|+.||.++|.||.+|.+|+.+|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998887764
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.73 E-value=1.4e-17 Score=172.80 Aligned_cols=105 Identities=31% Similarity=0.433 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 109 HQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 109 ~~c~~IL~~L~~------~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
+.+..++..+.. ...+++|+.+|+ +..+|+||.+|+.||||++|+++|+.+.|.++++|..||+|||.||..
T Consensus 145 ~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~ 222 (371)
T COG5076 145 ADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL 222 (371)
T ss_pred HHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 444444444432 256788888766 669999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhcc
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWSSE 215 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~~ 215 (475)
||++++.||.+|..|++.|...+..++......
T Consensus 223 yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~ 255 (371)
T COG5076 223 YNGPDSSVYVDAKELEKYFLKLIEEIPEEMLEL 255 (371)
T ss_pred ccCCCcchhhhhHHHHHHHHHHHHhccccchhh
Confidence 999999999999999999999999887655443
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.3e-17 Score=195.25 Aligned_cols=96 Identities=36% Similarity=0.817 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 011880 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (475)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I 190 (475)
|..||..|+.|..+|||++||++. .+||||+||++||||.||+.|+..+.|.++++|..||.|||.||.+||.+ |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999987 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 011880 191 HKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 191 ~k~A~~Lek~Fek~~kel~ 209 (475)
++....|.++|+..|..+.
T Consensus 1383 ~~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hhhcchHHHHHHHHHHhhc
Confidence 9999999999999887654
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.50 E-value=2.1e-14 Score=157.94 Aligned_cols=103 Identities=35% Similarity=0.589 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.+....+.+|..|..|..+|||.+||+.. ++||||.+|++||||.||+.+|..+.|..+..|++|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 35567889999999999999999999976 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 186 PENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
.++.+|+.|..|...|...+.....
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccchheecccchhhhhcchhhhhhh
Confidence 9999999999999999998887754
No 41
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.31 E-value=3.9e-13 Score=153.32 Aligned_cols=180 Identities=23% Similarity=0.335 Sum_probs=146.0
Q ss_pred CCccccccccccccccccch--hhhhhcccCCCCCCCCCCcccccccccccCCCCCCCCCCCccccCCCCCCCCCCCHHH
Q 011880 30 PCEYGQQQSHVENWRHSSSV--AESNQLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGV 107 (475)
Q Consensus 30 ~~~~~~Q~~k~~~~~~sss~--a~~n~l~~~~p~~~~g~~~~its~~~~~~~~~~~~rkR~~~~~~~~~~~kr~kl~~~~ 107 (475)
|.++..|..+|.++.-.+.- -..-.+|.++...|+|....++..+..+........+.+...++...+...+.++++.
T Consensus 1301 P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d 1380 (1563)
T KOG0008|consen 1301 PMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDD 1380 (1563)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccc
Confidence 55566666666666433321 2233578999999999999999888887777766666677788888888888888876
Q ss_pred HHHH---HHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 108 THQC---SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 108 ~~~c---~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
+-.+ ..++.++.+.+.+|+|++||+++ -+|+||.+|++||||.+|.+++..+.|.++.||.+||++|+.|+..||
T Consensus 1381 ~v~~~~~d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~n 1458 (1563)
T KOG0008|consen 1381 QVAFFILDNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYN 1458 (1563)
T ss_pred hhhHhhhhhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeec
Confidence 5443 44555566779999999999987 689999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 011880 185 PPENNVHKMAQELNNLFDIKWKSLEEK 211 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~kel~~k 211 (475)
+.++.+...|+++-++....+.+....
T Consensus 1459 g~e~~y~~k~~k~~ev~~~~~~e~~~~ 1485 (1563)
T KOG0008|consen 1459 GAESAYTKKARKIGEVGLANLLEYIEH 1485 (1563)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888877777665443
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.31 E-value=1e-12 Score=116.08 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHH
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNL-------YSVSDEFVADVRLTFSN 179 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~-------Y~S~~EF~~DvrLIf~N 179 (475)
....|..+|..++.++.+|||..||++.+.++||||++|++||||+||+++|.++. |..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 34667788888888889999999999977799999999999999999999999874 44444556666666666
Q ss_pred HhhhCCC
Q 011880 180 AMLYNPP 186 (475)
Q Consensus 180 A~~YN~p 186 (475)
+..||..
T Consensus 84 ~~~~~~~ 90 (114)
T cd05494 84 RSPSNIY 90 (114)
T ss_pred cCccccc
Confidence 6666653
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.21 E-value=1.6e-11 Score=140.50 Aligned_cols=145 Identities=23% Similarity=0.368 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 011880 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (475)
Q Consensus 108 ~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~ 187 (475)
...+..|++++...+...+|..||+.. .++|||.||+.||||+++++.+....|.+.++|+.|+.||++|..+||++.
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 456788999999999999999999976 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHhhhccCCCCC-----ccccccCcccccccccCCCCCCCCCCCCCCcccc
Q 011880 188 NNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAG-----LGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKS 254 (475)
Q Consensus 188 S~I~k~A~~Lek~Fek~~kel~~k~~~~~~~~~-----~~~~~~~~~~ei~~~~~~~P~spp~~~~~~~K~~ 254 (475)
+.+...+..+...+...|.+-+.++......+. ...+--...-.+......+|++|+||.++.+|+-
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~~~~d~~vs~~~~ipes~~f~~~v~~k~~ 1412 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAFFILDNIVSQMKEIPESWPFHEPVNKKRV 1412 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhHhhhhhHHHHHHhcchhcccccccchhhc
Confidence 999999999999988888877655543211110 0000001112233346789999999999988775
No 44
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.06 E-value=2.2e-10 Score=131.20 Aligned_cols=105 Identities=30% Similarity=0.465 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
....+..++..|...+...+|..||++. ++|||+++|++||||.+|+.++..+.|.++++|.+|+.||..||+.||..
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~ 643 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAK 643 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhcc
Confidence 3456668888888999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 187 ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
+..+|..|..+++.....+.....+..
T Consensus 644 dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 644 DTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred CeehHhhhHHHHhhhhhHHHhcccchh
Confidence 999999999999999888887654443
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.97 E-value=1.7e-09 Score=118.14 Aligned_cols=103 Identities=26% Similarity=0.390 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011880 102 KMDRGVTHQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRL 175 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrL 175 (475)
.++...+.++..||..+..+ .....|.+- |.+...|+||.+|..||.|..|++|+..+.|.+.+.|..||.|
T Consensus 48 ~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~fekl--p~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~l 125 (629)
T KOG1827|consen 48 VIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKL--PSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLL 125 (629)
T ss_pred ccChHHHHHHHHHHHHHHhhccccCcccchhHhhc--cccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHH
Confidence 34666778888888888866 346678884 4566899999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 011880 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWK 206 (475)
Q Consensus 176 If~NA~~YN~p~S~I~k~A~~Lek~Fek~~k 206 (475)
|+.||+.||.+++.+|+++..|+..|.....
T Consensus 126 m~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 126 MTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999999988654
No 46
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.97 E-value=1.1e-09 Score=97.35 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 011880 147 KPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (475)
Q Consensus 147 ~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~ 187 (475)
.||||+||++||.+|.|.++++|++||+|||.||+.||+++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 68999999999999999999999999999999999999874
No 47
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.90 E-value=2.2e-09 Score=121.01 Aligned_cols=100 Identities=27% Similarity=0.433 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 109 HQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 109 ~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
..|..|+.....+ ..+..|... |.+..+||||++|+.||++..|+++|..+.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 6778888777754 457789884 44669999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
||..+|.||.+|..|+.+|.....++..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999998875
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.61 E-value=7.5e-09 Score=114.99 Aligned_cols=94 Identities=39% Similarity=0.745 Sum_probs=88.2
Q ss_pred HHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 011880 116 KSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQ 195 (475)
Q Consensus 116 ~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~ 195 (475)
+.++.|.++|+|..||+...+.+|+||.+|++|||+++|++++.++.|.+..+..+|+..+|.||..||.+...|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhH
Q 011880 196 ELNNLFDIKWKSLE 209 (475)
Q Consensus 196 ~Lek~Fek~~kel~ 209 (475)
.++..|.+....++
T Consensus 82 ~~~~~~~~~~~~~~ 95 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMP 95 (640)
T ss_pred cchhhccccccccc
Confidence 99999987777665
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.55 E-value=7.6e-08 Score=106.94 Aligned_cols=104 Identities=26% Similarity=0.366 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 103 l~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
........+. .+.++++|..||+.. ..|+||.||+.||||.++.+++..+.|.+.++|..|+.+||.||..
T Consensus 290 ~~~~~~~~~~-------~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~ 360 (720)
T KOG1472|consen 290 GQEELYEAAE-------RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEK 360 (720)
T ss_pred cCHHHHHHhc-------ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchh
Confidence 3444445554 489999999999966 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHH-------------------HHHHHHHHHHHHHHHHhHHhhhcc
Q 011880 183 YNPPENNVH-------------------KMAQELNNLFDIKWKSLEEKWSSE 215 (475)
Q Consensus 183 YN~p~S~I~-------------------k~A~~Lek~Fek~~kel~~k~~~~ 215 (475)
||...+... ..-..+...|...+.+|++++...
T Consensus 361 ~n~ee~~~~~~~~vv~~~~s~~~~~~~~~~li~~~~~f~~qL~empkEyi~r 412 (720)
T KOG1472|consen 361 YNSEESHGLIEFAVIMNSKSLALIKEIPIELIGLRNEFSKQLPEMPKEYISR 412 (720)
T ss_pred hccccchhhhhhhhhhccCcHhHhccchhhhccchhHHHhhcccchHHHHHh
Confidence 998653211 122235566777777777666554
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.24 E-value=1.7e-07 Score=97.11 Aligned_cols=96 Identities=26% Similarity=0.247 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 011880 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (475)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I 190 (475)
.+.++..+.....-..|..||.+. ..|+|.+||+.|||+.|++.+++.++|.++.+|..|.++|..||..||-.++.+
T Consensus 24 ~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~ 101 (418)
T KOG1828|consen 24 AEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVP 101 (418)
T ss_pred HHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccc
Confidence 456777777787788899999987 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011880 191 HKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 191 ~k~A~~Lek~Fek~~kel 208 (475)
+..|..|..+....+.+-
T Consensus 102 ~~aaKrL~~v~~~~~qe~ 119 (418)
T KOG1828|consen 102 IVAAKRLCPVRLGMTQER 119 (418)
T ss_pred cccccccchhhcchhhHH
Confidence 999999988776666543
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.11 E-value=1.9e-06 Score=89.51 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=74.7
Q ss_pred HHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 011880 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192 (475)
Q Consensus 113 ~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k 192 (475)
....+|........|..|+... .+|.|..+|++|+|++|++.+..++.|.| .+|..|+.||+.||++||.+...+|.
T Consensus 215 ~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yye 291 (418)
T KOG1828|consen 215 LQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYE 291 (418)
T ss_pred HHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHH
Confidence 3344555556778888888865 89999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHH
Q 011880 193 MAQELNN 199 (475)
Q Consensus 193 ~A~~Lek 199 (475)
.|..+..
T Consensus 292 lank~lh 298 (418)
T KOG1828|consen 292 LANKQLH 298 (418)
T ss_pred HHHhhhh
Confidence 9988776
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.53 E-value=8.8e-06 Score=85.00 Aligned_cols=155 Identities=25% Similarity=0.390 Sum_probs=110.0
Q ss_pred hhhhhhcccCCCCCCCCCCcccccccccccCCCCCCCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCC
Q 011880 49 VAESNQLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFN 128 (475)
Q Consensus 49 ~a~~n~l~~~~p~~~~g~~~~its~~~~~~~~~~~~rkR~~~~~~~~~~~kr~kl~~~~~~~c~~IL~~L~~~~~s~pF~ 128 (475)
....-.+|.+++..++++.+.+...+.............-+...........+. . ...+-..++.....+...|+|+
T Consensus 209 f~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~~~~~~~~~~~~~ 285 (371)
T COG5076 209 FVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPGRE-E--REERESVLITNSQAHVGAWPFL 285 (371)
T ss_pred HHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhhccCcccc-c--cccchhhccccccccccccccc
Confidence 355668899999999988876555543322111111110111111100000000 0 0013344555567788999999
Q ss_pred CcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 129 RPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 129 ~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
.++... ..|+|+++|..+|++++.+.++..+.|....+|..|..++|+||..||+....++..+..+...+...+...
T Consensus 286 ~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 286 RPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred ccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 999866 899999999999999999999999999999999999999999999999999999999999998887766543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.79 E-value=0.0024 Score=58.17 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhccCC
Q 011880 148 PMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVP 217 (475)
Q Consensus 148 PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~~~~ 217 (475)
|.||.-|++||+.|.|.++.+|.+||-.|+.-++.-.+....+-+.-..+.-+|.+.+..++..+..+.+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~d~ 128 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSEDP 128 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccccccCC
Confidence 8999999999999999999999999999999888665544445555566777889999988887766543
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.60 E-value=0.25 Score=56.71 Aligned_cols=60 Identities=27% Similarity=0.411 Sum_probs=51.5
Q ss_pred cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 011880 145 ISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIK 204 (475)
Q Consensus 145 Ik~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~Fek~ 204 (475)
..-|..|..|+.+|++++|++.+.|.+|+-.|..||.+|.+-+..+-..+..|...|...
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 456899999999999999999999999999999999999998876666666666666544
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=0.26 Score=58.20 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=56.2
Q ss_pred CCCCCCcCCCCCCC---CCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q 011880 124 GWVFNRPVDPVKLD---IPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA--DVRLTFSNAMLYNPPE 187 (475)
Q Consensus 124 s~pF~~PVdp~k~~---~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~--DvrLIf~NA~~YN~p~ 187 (475)
+..|-.|+.+.... +++|..+|+.+||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 56788887753222 4599999999999999999999999999999999 9999999999999965
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=61.03 E-value=1.1 Score=50.31 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=66.0
Q ss_pred CCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 011880 125 WVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201 (475)
Q Consensus 125 ~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~F 201 (475)
..|+.-++ ...+|.||.+++-||-+..+.+++..++|.....|..|+.++|.|+..|+.+...++.++..|.+.+
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 34555444 3478999999999999999999999999999999999999999999999999999999988877654
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=51.65 E-value=6.5 Score=45.75 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=54.7
Q ss_pred CCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHH
Q 011880 128 NRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLY--------------S----------VSDE------FVADVRLTF 177 (475)
Q Consensus 128 ~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y--------------~----------S~~E------F~~DvrLIf 177 (475)
..++|-. .+|-|..+..-|.+|+|++..|.+..| . ++.+ ..+-..+|-
T Consensus 87 v~~~d~~--~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~ 164 (1113)
T KOG0644|consen 87 VPMLDKP--IPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIG 164 (1113)
T ss_pred ccCcCCC--CCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccc
Confidence 3455633 788999999999999999999988776 2 3333 677888999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHH
Q 011880 178 SNAMLYNPPENNVHKMAQELNNLF 201 (475)
Q Consensus 178 ~NA~~YN~p~S~I~k~A~~Lek~F 201 (475)
.||+.++.|++ +|+.++.+.++.
T Consensus 165 ~at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 165 CATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred cceeeecCcHH-HHHHHHHHHHHH
Confidence 99999999999 666665554443
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=50.16 E-value=58 Score=28.02 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=43.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 160 RNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 160 ~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
...|-|..-|+..|..|-..-..++..+..+..+|..|...|++.|++...
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356889999999999888888888877888999999999999999986643
No 59
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=35.13 E-value=84 Score=30.70 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=32.1
Q ss_pred cCChHHHHHHHHHHhHHHH--HHHHHhh-----hhcccCCCCCChh
Q 011880 420 QMSPKKALRAAMLKSRFAD--TILKAQQ-----RTLLDHGDKADPV 458 (475)
Q Consensus 420 ~~~~~k~~r~a~~~~~~~~--~i~ka~~-----~~~~~~~~k~d~~ 458 (475)
|-.|++.|+||+||+--+| .|+|-|+ -.|+++|--||=.
T Consensus 67 ~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGDd~ 112 (190)
T PF09802_consen 67 PKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGDDL 112 (190)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccHHH
Confidence 5679999999999987666 4777777 6789999999853
No 60
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.16 E-value=71 Score=25.89 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 152 GTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
..|+..+..|.|.+..|+++|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999887665
No 61
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.59 E-value=2.4e+02 Score=26.36 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=41.9
Q ss_pred cccccCCCCccccCChHHHHHHHHHHhHHHHHHHHHhhh---------hcccCCCCCChhhhHHHHHHHHH
Q 011880 408 SAEEWTTPLLDVQMSPKKALRAAMLKSRFADTILKAQQR---------TLLDHGDKADPVKLQQEKERLEQ 469 (475)
Q Consensus 408 ~~~~~~~~~~~~~~~~~k~~r~a~~~~~~~~~i~ka~~~---------~~~~~~~k~d~~k~~~e~e~le~ 469 (475)
.+++|+. -.--+|+|++.=-+=-|...|.+.....|++ +|+ .+++.|+.|++.-..|+..
T Consensus 32 ~~~G~~~-~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl-~~~~pD~~kI~aL~kEI~~ 100 (143)
T PRK11546 32 GGHGMWQ-QNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALL-TANPPDSSKINAVAKEMEN 100 (143)
T ss_pred CCCCCCc-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH
Confidence 3455554 2235899999877777888999888877765 454 4899999977655554443
No 62
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=20.96 E-value=1.2e+02 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 152 GTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
.-|+..+..|.|.|..|++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999998655553
No 63
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=20.32 E-value=2.9e+02 Score=20.74 Aligned_cols=42 Identities=24% Similarity=0.488 Sum_probs=30.3
Q ss_pred cccCChHH-HHHHHHHHhHHHHHHHHHhhhhcccCCCCCChhhhHHHHHHHHHHhhh
Q 011880 418 DVQMSPKK-ALRAAMLKSRFADTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQRE 473 (475)
Q Consensus 418 ~~~~~~~k-~~r~a~~~~~~~~~i~ka~~~~~~~~~~k~d~~k~~~e~e~le~~q~e 473 (475)
+.||||.. -|-.-+|+.||.... ..|-+.+.|.|.....|++
T Consensus 2 ~kqlsp~qdk~hk~ilrdrflssf--------------kqpgrfraelekvkl~~k~ 44 (48)
T PF10872_consen 2 PKQLSPYQDKIHKHILRDRFLSSF--------------KQPGRFRAELEKVKLMQKR 44 (48)
T ss_pred CcccCccHHHHHHHHHHHHHHHHh--------------cCcchHHHHHHHHHHHHHh
Confidence 46888853 577788999997643 2477888888887776665
Done!