Query 011880
Match_columns 475
No_of_seqs 310 out of 1394
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 2E-28 6.8E-33 213.9 14.4 107 102-210 9-115 (117)
2 2oss_A HUNK1 protein, bromodom 100.0 2.3E-28 8E-33 217.0 13.7 111 99-209 14-124 (127)
3 4alg_A Bromodomain-containing 100.0 1.8E-28 6.1E-33 224.6 12.4 115 97-211 23-137 (154)
4 2ouo_A HUNK1 protein, bromodom 99.9 3E-28 1E-32 217.1 10.5 106 105-210 21-129 (130)
5 2d9e_A Peregrin; four-helix bu 99.9 2.7E-27 9.2E-32 208.5 14.4 109 105-215 6-114 (121)
6 3d7c_A General control of amin 99.9 1.6E-27 5.6E-32 206.7 12.5 104 104-209 5-108 (112)
7 3p1f_A CREB-binding protein; s 99.9 1.7E-27 5.9E-32 208.5 12.4 109 104-212 9-118 (119)
8 3q2e_A Bromodomain and WD repe 99.9 1.9E-27 6.6E-32 209.6 12.6 109 104-214 8-117 (123)
9 3mb4_A Protein polybromo-1; PB 99.9 1.7E-27 5.7E-32 210.3 11.4 112 97-210 6-123 (124)
10 2yyn_A Transcription intermedi 99.9 2.4E-27 8.2E-32 212.5 12.5 110 102-214 16-127 (135)
11 3mb3_A PH-interacting protein; 99.9 3.1E-27 1.1E-31 211.3 12.7 109 105-215 20-129 (135)
12 3fkm_X Signaling protein; brom 99.9 3.4E-27 1.2E-31 218.5 13.2 108 102-209 17-124 (166)
13 1e6i_A Transcriptional activat 99.9 4.6E-27 1.6E-31 206.9 12.0 104 107-213 14-117 (121)
14 3jvl_A Bromodomain-containing 99.9 1.6E-27 5.6E-32 208.9 8.5 107 104-210 7-116 (120)
15 2dat_A Possible global transcr 99.9 8.3E-27 2.9E-31 205.7 12.3 104 104-209 11-120 (123)
16 3rcw_A Bromodomain-containing 99.9 1.1E-26 3.6E-31 207.8 13.0 106 106-213 13-118 (135)
17 3nxb_A CAT eye syndrome critic 99.9 8.7E-27 3E-31 203.2 12.1 100 106-207 16-115 (116)
18 2i7k_A Bromodomain-containing 99.9 1.5E-26 5.1E-31 202.9 12.7 103 105-209 7-109 (117)
19 3iu5_A Protein polybromo-1; PB 99.9 9.9E-27 3.4E-31 203.0 10.1 106 103-210 2-113 (116)
20 2grc_A Probable global transcr 99.9 2.9E-26 9.8E-31 203.9 13.2 107 104-212 9-122 (129)
21 3hme_A Bromodomain-containing 99.9 3E-26 1E-30 202.2 12.6 102 105-208 12-113 (123)
22 3ljw_A Protein polybromo-1; al 99.9 4.8E-26 1.7E-30 199.9 12.5 105 105-211 7-117 (120)
23 3mqm_A Probable histone-lysine 99.9 5.7E-26 2E-30 200.8 12.2 107 105-213 8-120 (126)
24 3k2j_A Protein polybromo-1; PB 99.9 9.5E-26 3.2E-30 201.2 12.8 106 104-211 15-126 (130)
25 3uv4_A Second bromodomain of h 99.9 1.9E-25 6.5E-30 205.4 12.6 105 108-214 27-136 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 1.3E-25 4.3E-30 207.7 10.9 105 102-208 68-172 (174)
27 3o36_A Transcription intermedi 99.9 8.6E-25 3E-29 204.4 12.3 105 102-209 77-183 (184)
28 3dai_A ATPase family AAA domai 99.9 1.6E-24 5.3E-29 192.9 12.5 106 106-213 10-120 (130)
29 3tlp_A Protein polybromo-1; PB 99.9 3.6E-25 1.2E-29 201.2 8.0 104 107-212 25-135 (150)
30 3uv5_A Transcription initiatio 99.9 6.3E-24 2.2E-28 209.3 13.9 106 106-213 14-119 (265)
31 3u5n_A E3 ubiquitin-protein li 99.9 6.1E-24 2.1E-28 202.3 12.3 110 99-211 74-203 (207)
32 2ro1_A Transcription intermedi 99.9 5.4E-24 1.8E-28 200.7 9.7 105 101-212 71-180 (189)
33 2dkw_A Hypothetical protein KI 99.9 3.9E-23 1.3E-27 184.7 11.5 96 104-206 10-109 (131)
34 3uv5_A Transcription initiatio 99.9 5.8E-23 2E-27 202.4 13.2 105 108-214 138-243 (265)
35 3aad_A Transcription initiatio 99.9 9.3E-23 3.2E-27 203.9 9.1 105 106-212 47-151 (292)
36 3aad_A Transcription initiatio 99.9 4.7E-22 1.6E-26 198.7 13.0 95 117-213 181-275 (292)
37 2r0y_A Chromatin structure-rem 99.8 1.5E-21 5.2E-26 196.9 10.1 92 120-213 177-269 (311)
38 2r10_A Chromatin structure-rem 99.8 2.1E-21 7E-26 199.4 10.8 91 121-213 228-319 (361)
39 2r10_A Chromatin structure-rem 99.8 6.4E-20 2.2E-24 188.3 7.8 98 107-208 79-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1E-19 3.6E-24 183.5 7.4 99 106-208 28-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 2.2E-17 7.5E-22 150.1 13.6 101 105-211 6-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.5 1.1E-14 3.6E-19 137.0 7.0 101 103-216 72-172 (183)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=2e-28 Score=213.85 Aligned_cols=107 Identities=29% Similarity=0.584 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
+.....+..|..||..|+.++.+++|++||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCE 86 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 182 LYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
.||+++|.+|.+|..|++.|++.|++++.
T Consensus 87 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 87 TFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999874
No 2
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=2.3e-28 Score=216.99 Aligned_cols=111 Identities=39% Similarity=0.696 Sum_probs=104.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 99 KRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 99 kr~kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
+..++...+...|..||+.|+.++.+|+|++||++.+..+||||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 14 ~~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 93 (127)
T 2oss_A 14 KPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFT 93 (127)
T ss_dssp SCCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33446778888899999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 179 NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
||++||+++|.||.+|..|++.|++.|+++.
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 94 NCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999998875
No 3
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=1.8e-28 Score=224.57 Aligned_cols=115 Identities=37% Similarity=0.661 Sum_probs=106.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011880 97 KDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (475)
Q Consensus 97 ~~kr~kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLI 176 (475)
++++.+++..+...|..||+.|+.++.+|+|++||++.++++||||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 23 p~~~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li 102 (154)
T 4alg_A 23 PKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTM 102 (154)
T ss_dssp ---CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34445678888899999999999999999999999998878999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 011880 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (475)
Q Consensus 177 f~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k 211 (475)
|.||++||++++.||.+|..|+++|++.|+++...
T Consensus 103 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 103 FTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999999999999999998654
No 4
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=3e-28 Score=217.08 Aligned_cols=106 Identities=39% Similarity=0.732 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHcCCC---CCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 105 RGVTHQCSVILKSLMMHPA---GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~---s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
...++.|..||+.|+.++. +|+|++||++...++||||++|++||||+||++||.++.|.++++|.+||+|||.||+
T Consensus 21 ~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 21 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3566889999999998864 8999999999877899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 182 LYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
+||++++.||.+|..|++.|++.|++|..
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998753
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=208.54 Aligned_cols=109 Identities=27% Similarity=0.364 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
..+...|..||+.|+.++.+++|++||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357789999999999999999999999986 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhHHhhhcc
Q 011880 185 PPENNVHKMAQELNNLFDIKWKSLEEKWSSE 215 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~kel~~k~~~~ 215 (475)
+++|.+|.+|..|++.|+..|.++.......
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~ 114 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQAEKM 114 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998766543
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=1.6e-27 Score=206.74 Aligned_cols=104 Identities=31% Similarity=0.565 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 011880 104 DRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (475)
...|...|..||+.|+.++.+++|++||++. .+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 184 NPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 184 N~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
|+++|.+|.+|..|++.|++.|+++.
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999863
No 7
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=1.7e-27 Score=208.48 Aligned_cols=109 Identities=35% Similarity=0.597 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHHc-CCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 104 DRGVTHQCSVILKSLMM-HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~-~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
..++...|..+|..|+. ++.+|+|.+||++...++||||++|++||||+||++||+++.|.++++|.+||+|||.||+.
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999987 68999999999987667999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel~~k~ 212 (475)
||+++|.+|.+|..|++.|++.|.++.+.+
T Consensus 89 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988753
No 8
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=209.61 Aligned_cols=109 Identities=35% Similarity=0.600 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 011880 104 DRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (475)
...|.+.|..||+.|+.++.+++|++||++. .+||||++|++||||+||++||.++.|.++++|.+||+|||.||+.|
T Consensus 8 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp --CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 011880 184 NPP-ENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (475)
Q Consensus 184 N~p-~S~I~k~A~~Lek~Fek~~kel~~k~~~ 214 (475)
|++ ++.||.+|..|++.|++.|+++..+|..
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 8999999999999999999999998864
No 9
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.7e-27 Score=210.30 Aligned_cols=112 Identities=26% Similarity=0.405 Sum_probs=101.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHc------CCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHH
Q 011880 97 KDKRPKMDRGVTHQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFV 170 (475)
Q Consensus 97 ~~kr~kl~~~~~~~c~~IL~~L~~------~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~ 170 (475)
..++.+....+...|..||+.|+. ++.+++|.+||+.. ++||||++|++||||+||++||+++.|.++++|.
T Consensus 6 ~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~ 83 (124)
T 3mb4_A 6 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMV 83 (124)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHH
T ss_pred CCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 345566778899999999999998 56679999999965 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 171 ADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 171 ~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
+||+|||.||+.||+++|.||.+|..|+++|++.|+++..
T Consensus 84 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 84 EDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999864
No 10
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.4e-27 Score=212.53 Aligned_cols=110 Identities=35% Similarity=0.602 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q 011880 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR--NLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~--~~Y~S~~EF~~DvrLIf~N 179 (475)
.|++.+.+.|..||..|+.|+.+++|+.||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N 92 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 92 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999986 589999999999999999999998 5999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 011880 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~ 214 (475)
|++||++++.||.+|..|++.|++.|+++..++..
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 93 CAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999876543
No 11
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=211.28 Aligned_cols=109 Identities=31% Similarity=0.544 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
..|.+.|..||+.|+.++.+++|++||++. .+||||++|++||||+||++||.++.|.++++|.+||+|||.||+.||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999985 899999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHHhhhcc
Q 011880 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWSSE 215 (475)
Q Consensus 185 ~p-~S~I~k~A~~Lek~Fek~~kel~~k~~~~ 215 (475)
++ ++.||.+|..|+++|++.|..+..+|...
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 129 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKSA 129 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 89999999999999999999999988654
No 12
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.4e-27 Score=218.54 Aligned_cols=108 Identities=28% Similarity=0.510 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
.+...|...|..||..|+.++.+++|..||++.+..+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 182 LYNPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
+||++++.||.+|..|+++|++.|.++.
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999874
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=4.6e-27 Score=206.95 Aligned_cols=104 Identities=35% Similarity=0.651 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
+...|..||+.|+.|+.+++|++||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999999976 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 187 ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
++.+|.+|..|++.|++.|+++. .|.
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p-~~~ 117 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP-EYS 117 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG-GGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc-ccc
Confidence 99999999999999999999884 443
No 14
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=1.6e-27 Score=208.91 Aligned_cols=107 Identities=38% Similarity=0.714 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHHcCCC---CCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011880 104 DRGVTHQCSVILKSLMMHPA---GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~~---s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (475)
...+++.|..||..|+.++. +|+|.+||++...++||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999877 999999999886669999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 181 MLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 181 ~~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
++||++++.||.+|..|++.|++.|.++..
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999998853
No 15
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=8.3e-27 Score=205.70 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHcCC------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011880 104 DRGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf 177 (475)
...+.+.|..||+.|+.+. .+++|++||+.. .+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 5678899999999999885 689999999965 89999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 178 ~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
.||++||++++.||.+|..|+++|++.+++++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998864
No 16
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=207.80 Aligned_cols=106 Identities=25% Similarity=0.410 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 48899999999999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 186 PENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
+++.+|.+|..|++.|++.|+++.....
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~~~~~~ 118 (135)
T 3rcw_A 91 RDTVFYRAAVRLRDQGGVVLRQARREVD 118 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877654
No 17
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=8.7e-27 Score=203.20 Aligned_cols=100 Identities=29% Similarity=0.539 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 36789999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 011880 186 PENNVHKMAQELNNLFDIKWKS 207 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~ke 207 (475)
++|.+|.+|..|++.|++.|.+
T Consensus 94 ~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999864
No 18
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=202.91 Aligned_cols=103 Identities=26% Similarity=0.360 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
..+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||
T Consensus 7 ~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN 84 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYN 84 (117)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357789999999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 185 PPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
+++|.+|.+|..|++.|++.+....
T Consensus 85 ~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 85 KPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 19
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=9.9e-27 Score=202.98 Aligned_cols=106 Identities=24% Similarity=0.361 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHHHcC------CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011880 103 MDRGVTHQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (475)
Q Consensus 103 l~~~~~~~c~~IL~~L~~~------~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLI 176 (475)
|+..+...|..||+.|+.+ +.+++|.+||+.. .+||||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 79 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLL 79 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGG--GCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcc--cCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5566789999999999987 4599999999965 8999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 177 f~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
|.||+.||+++|.+|.+|..|++.|++.++++.+
T Consensus 80 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 80 FNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999875
No 20
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=2.9e-26 Score=203.95 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHHHcCC-------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011880 104 DRGVTHQCSVILKSLMMHP-------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~-------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLI 176 (475)
...+...|..||+.|+++. .+++|+.||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5678999999999999875 589999999965 8999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 011880 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (475)
Q Consensus 177 f~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~ 212 (475)
|.||++||+++|.||.+|..|++.|++.|+++...-
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 122 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKED 122 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999998653
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=202.23 Aligned_cols=102 Identities=29% Similarity=0.372 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 011880 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN 184 (475)
..+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357789999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 185 PPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 185 ~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
++++.+|.+|..|++.|++.|.+.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=4.8e-26 Score=199.88 Aligned_cols=105 Identities=26% Similarity=0.464 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~~------s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
..|...|..|++.|+.+.. +++|++||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 4678899999999998766 99999999865 899999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 011880 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (475)
Q Consensus 179 NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k 211 (475)
||+.||++++.||.+|..|++.|++.|++++..
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998764
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=5.7e-26 Score=200.83 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 105 RGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
..+...|..|++.|+.+. .+|+|.+||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356788999999999864 499999999976 899999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 179 NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
||+.||+++|.+|.+|..|++.|++.|.++.+++.
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987764
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=9.5e-26 Score=201.16 Aligned_cols=106 Identities=24% Similarity=0.381 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHHHcCC------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011880 104 DRGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf 177 (475)
...+..+|..|++.|..+. .+++|++||+.. .+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3467889999999999764 499999999965 89999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 011880 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (475)
Q Consensus 178 ~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k 211 (475)
.||+.||+++|.||.+|..|++.|++.|+++.++
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999764
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=1.9e-25 Score=205.41 Aligned_cols=105 Identities=32% Similarity=0.622 Sum_probs=95.0
Q ss_pred HHHHHHHHHH-----HHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 108 THQCSVILKS-----LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 108 ~~~c~~IL~~-----L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
...|..||.. |+.++.+|+|+.||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444444 55679999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~ 214 (475)
||++++.||.+|..|+..|++.|.++.+.+..
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~ 136 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQ 136 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877764
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=1.3e-25 Score=207.72 Aligned_cols=105 Identities=36% Similarity=0.641 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
.|+......|..||..|+.++.+++|++||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 68 ~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR 145 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999986 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 182 LYNPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 182 ~YN~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
+||++++.+|.+|..|+++|++.|+++
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998876
No 27
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=8.6e-25 Score=204.36 Aligned_cols=105 Identities=37% Similarity=0.649 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q 011880 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR--NLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 102 kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~--~~Y~S~~EF~~DvrLIf~N 179 (475)
.|...+++.|..||..|+.++.+++|+.||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999985 589999999999999999999998 7899999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 011880 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~ 209 (475)
|++||++++.||.+|..|+++|++.|++++
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999875
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=1.6e-24 Score=192.87 Aligned_cols=106 Identities=29% Similarity=0.496 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.+...|..+++.|+.++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56678999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHHHH-HhHHhhh
Q 011880 186 PENNV----HKMAQELNNLFDIKWK-SLEEKWS 213 (475)
Q Consensus 186 p~S~I----~k~A~~Lek~Fek~~k-el~~k~~ 213 (475)
+++++ +.+|..|++.+...++ ++.+.+.
T Consensus 88 ~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~~ 120 (130)
T 3dai_A 88 DRDPGDRLIRHRACALRDTAYAIIKEELDEDFE 120 (130)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99866 7889999999998886 5554443
No 29
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=3.6e-25 Score=201.17 Aligned_cols=104 Identities=25% Similarity=0.386 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 011880 107 VTHQCSVILKSLMMHPA-------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~-------s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~N 179 (475)
...+|..||+.|+++.. +++|+.||+.. .+||||++|++||||+||++||+++.|.++++|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35778888888886643 89999999865 8999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 011880 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (475)
Q Consensus 180 A~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~ 212 (475)
|+.||++++.||.+|..|+++|++.|+++....
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999987543
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.3e-24 Score=209.32 Aligned_cols=106 Identities=28% Similarity=0.548 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.|...|..||..|+.++.+++|+.||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||+
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 78899999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 186 PENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
+++.||.+|..|++.|++.|+++..++.
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 119 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKEDKLA 119 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999876554
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=6.1e-24 Score=202.34 Aligned_cols=110 Identities=33% Similarity=0.580 Sum_probs=103.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 011880 99 KRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVSDEFVADVRL 175 (475)
Q Consensus 99 kr~kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~---~~Y~S~~EF~~DvrL 175 (475)
....|+..++..|..||..|+.++.+++|++||+. .+||||++|++||||+||++||++ +.|.++.+|.+||+|
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 34568899999999999999999999999999985 699999999999999999999997 799999999999999
Q ss_pred HHHHHhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHhHHh
Q 011880 176 TFSNAMLYNP-----------------PENNVHKMAQELNNLFDIKWKSLEEK 211 (475)
Q Consensus 176 If~NA~~YN~-----------------p~S~I~k~A~~Lek~Fek~~kel~~k 211 (475)
||.||++||+ +++.|+.+|..|+.+|+.+|+++.+.
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999999999999764
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=200.74 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHH
Q 011880 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIIS--KPMDLGTVKTRLDRN---LYSVSDEFVADVRL 175 (475)
Q Consensus 101 ~kl~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk--~PMDL~TIkkKL~~~---~Y~S~~EF~~DvrL 175 (475)
..|+...+..|..||..|+.|+.+|+|++||+ |+||.+|+ +||||+||++||+++ .|.++++|++||+|
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~L 144 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGR 144 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHH
Confidence 46788888999999999999999999999998 67999998 899999999999999 99999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 011880 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (475)
Q Consensus 176 If~NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~ 212 (475)
||.||++|| +++.+|.+|..|+++|+++|+++....
T Consensus 145 if~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 145 MFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999 588899999999999999999997653
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=184.66 Aligned_cols=96 Identities=29% Similarity=0.472 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 011880 104 DRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 104 ~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (475)
..++...|..||+.|+.++.+++|.+| +||||++|++||||+||++||.++.|.++.+|.+||+|||.||++|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999998 6999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q 011880 184 NPPENN----VHKMAQELNNLFDIKWK 206 (475)
Q Consensus 184 N~p~S~----I~k~A~~Lek~Fek~~k 206 (475)
|+++|+ |+.+|..|++.|...++
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999985 67999999999998885
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=5.8e-23 Score=202.45 Aligned_cols=105 Identities=30% Similarity=0.602 Sum_probs=95.3
Q ss_pred HHHHHHHHHH-HHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 108 THQCSVILKS-LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 108 ~~~c~~IL~~-L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
...|..++.. |+.++.+|+|+.||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||++
T Consensus 138 ~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~ 215 (265)
T 3uv5_A 138 SFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 215 (265)
T ss_dssp HHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3444555543 67889999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 011880 187 ENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fek~~kel~~k~~~ 214 (475)
+|.||.+|..|+..|++.|+++.+.+..
T Consensus 216 ~s~~~~~A~~l~~~~~~~~~~~~~~~~~ 243 (265)
T 3uv5_A 216 ESQYTKTAQEIVNVCYQTLTEYDEHLTQ 243 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877653
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=9.3e-23 Score=203.86 Aligned_cols=105 Identities=29% Similarity=0.549 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.+...|..||+.|+.++.+++|++||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 47 ~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 124 (292)
T 3aad_A 47 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 124 (292)
T ss_dssp HHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcC
Confidence 35688999999999999999999999986 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 011880 186 PENNVHKMAQELNNLFDIKWKSLEEKW 212 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel~~k~ 212 (475)
+++.+|.+|..|++.|++.|+++..++
T Consensus 125 ~~s~i~~~A~~L~~~~~~~~~~~~~~~ 151 (292)
T 3aad_A 125 PKHSLTQISQSMLDLCDEKLKEKEDKL 151 (292)
T ss_dssp SSSHHHHHHTHHHHTTTTTGGGSHHHH
T ss_pred CchHHHHHHHHHHHHHHhhhhcchhhh
Confidence 999999999999999999998876554
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=198.75 Aligned_cols=95 Identities=33% Similarity=0.656 Sum_probs=90.2
Q ss_pred HHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 011880 117 SLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196 (475)
Q Consensus 117 ~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~ 196 (475)
.|+.++.+|+|+.||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|.||.+|..
T Consensus 181 ~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~ 258 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQE 258 (292)
T ss_dssp TGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred hhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 377889999999999975 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhh
Q 011880 197 LNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 197 Lek~Fek~~kel~~k~~ 213 (475)
|++.|++.|.++.+.+.
T Consensus 259 L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 259 IVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877654
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=1.5e-21 Score=196.90 Aligned_cols=92 Identities=29% Similarity=0.438 Sum_probs=85.8
Q ss_pred cCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 011880 120 MHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNN 199 (475)
Q Consensus 120 ~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek 199 (475)
.|+.+|+|++||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 357899999999976 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-HHhhh
Q 011880 200 LFDIKWKSL-EEKWS 213 (475)
Q Consensus 200 ~Fek~~kel-~~k~~ 213 (475)
.|++.|++. .+.|.
T Consensus 255 ~f~~~~~~~~~p~~~ 269 (311)
T 2r0y_A 255 YFNYLIQKEFFPELQ 269 (311)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhcCCcch
Confidence 999999984 44443
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.85 E-value=2.1e-21 Score=199.39 Aligned_cols=91 Identities=30% Similarity=0.448 Sum_probs=85.3
Q ss_pred CCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 011880 121 HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNL 200 (475)
Q Consensus 121 ~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p~S~I~k~A~~Lek~ 200 (475)
|+.+|+|++||++. .+||||+||++||||+||++||+++.|.++++|.+||+|||.||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999976 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-HHhhh
Q 011880 201 FDIKWKSL-EEKWS 213 (475)
Q Consensus 201 Fek~~kel-~~k~~ 213 (475)
|+..|++. .+.|.
T Consensus 306 f~~~~~~~~~p~~~ 319 (361)
T 2r10_A 306 FNYLIQKEFFPELQ 319 (361)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCCcch
Confidence 99999984 44443
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=6.4e-20 Score=188.34 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhh
Q 011880 107 VTHQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYS-VSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~--~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~-S~~EF~~DvrLIf~NA~~Y 183 (475)
+...|..+|+.|... ..+++|++||+.. .+||||+||++||||+||++|| +.|. ++++|.+||+|||.||+.|
T Consensus 79 ~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~--~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 79 FNRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccHHhcCCCCcc--cCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 456788888888654 4589999999965 8999999999999999999998 4555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 184 NPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 184 N~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
|+++|.||.+|..|+++|++.|.+.
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988865
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1e-19 Score=183.49 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhh
Q 011880 106 GVTHQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYS-VSDEFVADVRLTFSNAML 182 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~--~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~-S~~EF~~DvrLIf~NA~~ 182 (475)
.|...+..+|..+... ..+++|++||+.. .+||||++|++||||+||++|| +.|. ++++|.+||+|||.||++
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~--~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~ 103 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 103 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHH
Confidence 4566666677766643 4689999999855 8999999999999999999999 5555 899999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
||+++|.||.+|..|+++|++.|.+.
T Consensus 104 yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 104 YNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=150.07 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 011880 105 RGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~~------~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~ 178 (475)
..+...+..|++.++++. .+.+|++. |.+. |+||. ++||+|.+|++||..+.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~L--Psk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEI--PAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTC--CSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHC--CCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 356788899999999884 36789984 4443 89998 999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 011880 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (475)
Q Consensus 179 NA~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k 211 (475)
||++||.++|+||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998764
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.52 E-value=1.1e-14 Score=137.02 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 103 l~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
+..++...+..||..|..++.+++|+.. . ++.||||.+|++||+.+.|.++.+|..||.|||.||..
T Consensus 72 ~~~el~~~l~~vl~~L~~~~~s~~~~~y-----------~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~ 138 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNSRTTSHLLRY-----------R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAIN 138 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHTC-----------C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccHhhhhh-----------h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Confidence 3455667789999999999999999862 1 59999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhccC
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEV 216 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~~~~ 216 (475)
||.+++.+..++..|+.+|++.++++++.+....
T Consensus 139 ~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~ 172 (183)
T 3lqh_A 139 SDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKK 172 (183)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGG
T ss_pred ccCCChhhhhhhhHHHHHHHHHHHHHCCCCCccc
Confidence 9999999999999999999999999998776553
Done!