Query 011880
Match_columns 475
No_of_seqs 310 out of 1394
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 17:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011880.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011880hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d7ca1 a.29.2.1 (A:731-832) G 99.9 2.2E-27 1.6E-31 201.1 12.6 100 106-207 2-101 (102)
2 d3dwya1 a.29.2.1 (A:1084-1197) 99.9 2.9E-27 2.1E-31 204.0 12.1 108 105-212 5-113 (114)
3 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 99.9 3.2E-27 2.3E-31 202.8 12.2 102 107-210 4-105 (111)
4 d1eqfa1 a.29.2.1 (A:1359-1497) 99.9 1.1E-26 8.2E-31 207.0 15.4 106 106-213 26-131 (139)
5 d1wuma1 a.29.2.1 (A:715-832) P 99.9 1.3E-26 9.4E-31 201.1 11.2 104 103-208 10-113 (118)
6 d1eqfa2 a.29.2.1 (A:1498-1625) 99.9 5.6E-26 4.1E-30 199.9 12.6 106 106-213 5-115 (128)
7 d2dlqa2 g.37.1.1 (A:35-62) GLI 17.3 18 0.0013 21.9 0.6 8 316-323 3-10 (28)
8 d2jb0b1 d.4.1.1 (B:449-572) DN 12.3 72 0.0052 25.9 3.3 30 152-181 30-59 (124)
9 d2gykb1 d.4.1.1 (B:4-133) DNas 11.5 78 0.0057 25.8 3.3 43 139-182 21-63 (130)
10 d1zhxa1 d.338.1.1 (A:2-434) Ox 11.1 42 0.0031 32.4 1.7 20 455-474 326-345 (433)
No 1
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=2.2e-27 Score=201.06 Aligned_cols=100 Identities=32% Similarity=0.608 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
++...|..||..|.+|+.+++|+.||++. ++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 79 (102)
T d3d7ca1 2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 79 (102)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhCCCCCccCCCCChh--hCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence 57789999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 011880 186 PENNVHKMAQELNNLFDIKWKS 207 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~ke 207 (475)
++|.+|.+|..|++.|+++|++
T Consensus 80 ~~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 80 PDSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998875
No 2
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=2.9e-27 Score=203.99 Aligned_cols=108 Identities=35% Similarity=0.607 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 011880 105 RGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (475)
Q Consensus 105 ~~~~~~c~~IL~~L~~~-~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~Y 183 (475)
.++.+.|..+|+.|+.+ +.+++|+.||+|...++||||++|++||||.+|++||+++.|.++++|.+||+|||.||+.|
T Consensus 5 ~el~~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 84 (114)
T d3dwya1 5 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 84 (114)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHH
Confidence 46788999999999977 69999999999987789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 011880 184 NPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (475)
Q Consensus 184 N~p~S~I~k~A~~Lek~Fek~~kel~~k~ 212 (475)
|+++|.+|.+|..|++.|++.+..+.+.+
T Consensus 85 N~~~s~~~~~A~~L~~~f~~~~~~i~~~~ 113 (114)
T d3dwya1 85 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113 (114)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987753
No 3
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.94 E-value=3.2e-27 Score=202.84 Aligned_cols=102 Identities=35% Similarity=0.651 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 011880 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (475)
Q Consensus 107 ~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~p 186 (475)
+...|..||..|++|+.+|||+.||++. .+|+||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||++
T Consensus 4 ~~~~l~~il~~l~~~~~a~pF~~pvd~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 81 (111)
T d1e6ia_ 4 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 81 (111)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCch--hCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHH
Q 011880 187 ENNVHKMAQELNNLFDIKWKSLEE 210 (475)
Q Consensus 187 ~S~I~k~A~~Lek~Fek~~kel~~ 210 (475)
+|.++.+|..|++.|++.|+++.+
T Consensus 82 ~s~i~~~A~~l~~~f~~~~~~ipe 105 (111)
T d1e6ia_ 82 NTSYYKYANRLEKFFNNKVKEIPE 105 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998743
No 4
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=1.1e-26 Score=206.97 Aligned_cols=106 Identities=28% Similarity=0.548 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 011880 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (475)
Q Consensus 106 ~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~YN~ 185 (475)
.+...|..||+.|..++.+++|+.||++. ++||||++|++||||.+|++||+++.|.++++|.+||+|||.||+.||+
T Consensus 26 ~l~~~l~~il~~l~~~~~s~pF~~Pvd~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 103 (139)
T d1eqfa1 26 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 103 (139)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChh--hccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 36688999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 186 PENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 186 p~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
+++.++.+|..|+..|++.|+++.+++.
T Consensus 104 ~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 131 (139)
T d1eqfa1 104 PKHSLTQISQSMLDLCDEKLKEKEDKLA 131 (139)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653
No 5
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=1.3e-26 Score=201.14 Aligned_cols=104 Identities=33% Similarity=0.542 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 103 l~~~~~~~c~~IL~~L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
....+...|..||..|+.|+.+++|+.||++. .+||||++|++||||++|++||+++.|.++++|.+||+|||.||+.
T Consensus 10 ~~~~l~~~l~~il~~l~~~~~a~~F~~pv~~~--~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 87 (118)
T d1wuma1 10 DPDQLYSTLKSILQQVKSHQSAWPFMEPVKRT--EAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKE 87 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSCHHHHSCCCSS--SSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCcCcccCCCChh--hCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHh
Q 011880 183 YNPPENNVHKMAQELNNLFDIKWKSL 208 (475)
Q Consensus 183 YN~p~S~I~k~A~~Lek~Fek~~kel 208 (475)
||+++|.+|.+|..|+++|++.|+++
T Consensus 88 yn~~~s~~~~~A~~l~~~f~~~~~e~ 113 (118)
T d1wuma1 88 YNPPESEYYKCANILEKFFFSKIKEA 113 (118)
T ss_dssp HSCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999875
No 6
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=5.6e-26 Score=199.92 Aligned_cols=106 Identities=32% Similarity=0.607 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHH-----HHcCCCCCCCCCcCCCCCCCCCcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011880 106 GVTHQCSVILKS-----LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (475)
Q Consensus 106 ~~~~~c~~IL~~-----L~~~~~s~pF~~PVdp~k~~~PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA 180 (475)
+....+..||+. |+.++.+|||++||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||
T Consensus 5 ~~~~~~~~il~~l~~~~~~~~p~a~pF~~pVd~~--~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 82 (128)
T d1eqfa2 5 DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANS 82 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCChhcCCCCcc--cCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 333444455544 45668899999999976 89999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 011880 181 MLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (475)
Q Consensus 181 ~~YN~p~S~I~k~A~~Lek~Fek~~kel~~k~~ 213 (475)
+.||+++|.++.+|..|++.|++.+.++.+.+.
T Consensus 83 ~~yN~~~s~i~~~A~~L~~~~~~~l~~~~~~~~ 115 (128)
T d1eqfa2 83 VKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLT 115 (128)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999876654
No 7
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.31 E-value=18 Score=21.93 Aligned_cols=8 Identities=63% Similarity=1.821 Sum_probs=5.0
Q ss_pred cccccCcc
Q 011880 316 ACKSCGKC 323 (475)
Q Consensus 316 ~~~~~~~~ 323 (475)
+|.|||+|
T Consensus 3 ~c~kcgkc 10 (28)
T d2dlqa2 3 ECPKCGKC 10 (28)
T ss_dssp BCTTTCCB
T ss_pred ccccchhh
Confidence 45667665
No 8
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=12.35 E-value=72 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 011880 152 GTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (475)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~ 181 (475)
..|..||+...|.++++|...|++-..|--
T Consensus 30 ~qIadkLrGr~F~sFd~FR~afW~~Va~Dp 59 (124)
T d2jb0b1 30 DRIANKLRDKEFKSFDDFRKKFWEEVSKDP 59 (124)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcCH
Confidence 679999999999999999999999887744
No 9
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=11.50 E-value=78 Score=25.82 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=33.2
Q ss_pred CcchhccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 011880 139 PDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (475)
Q Consensus 139 PDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DvrLIf~NA~~ 182 (475)
..|-.-.--|| -..|..+|+...|.++++|...|++-+.|--.
T Consensus 21 ~~a~~~~GapI-P~qIadkLrGr~F~sFd~FR~afW~~Va~Dpe 63 (130)
T d2gykb1 21 DDAGKDSGAPI-PDRIADKLRDKEFKSFDDFRKAVWEEVSKDPE 63 (130)
T ss_dssp GGGGSTTCEEC-BHHHHHHHTTCEESSHHHHHHHHHHHHHHCTT
T ss_pred hhcCCCCCCcC-CHHHHHHhcCCccCCHHHHHHHHHHHHhcCHH
Confidence 34444444455 37899999999999999999999998887443
No 10
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.09 E-value=42 Score=32.39 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=16.7
Q ss_pred CChhhhHHHHHHHHHHhhhC
Q 011880 455 ADPVKLQQEKERLEQRQREG 474 (475)
Q Consensus 455 ~d~~k~~~e~e~le~~q~ee 474 (475)
+|-.+-+.||.+||.+||++
T Consensus 326 Gd~d~A~~eK~~LEe~QR~~ 345 (433)
T d1zhxa1 326 GDFNLIAKTKTELEETQREL 345 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999864
Done!