BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011881
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 22/159 (13%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + G +Y LGG+ + + V +YDP W T M+ R+ +LND +YV
Sbjct: 152 GAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYV 211
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY 291
VGG G L S E ++ TD+W+ V SM R G T
Sbjct: 212 VGGFD----GTAHLSSVEAYNIRTDSWTTVTSMTTPRCY---------------VGATVL 252
Query: 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMG 330
GRL + E YDP +SW E+ MG
Sbjct: 253 RGRLYAIAGYDGNSLLSSI--ECYDPIIDSW-EVVTSMG 288
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 161 WNDTLPQ-MPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAY 219
W + P G + ++ +YV+GGF T+ + V Y+ ++W TSM+ R Y
Sbjct: 187 WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246
Query: 220 CKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSR 268
+L +LY + G G + L S E +DP D+W V SM R
Sbjct: 247 VGATVLRGRLYAIAGYD----GNSLLSSIECYDPIIDSWEVVTSMGTQR 291
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 40/239 (16%)
Query: 182 LYVLGGF-SRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARG 240
L V+GGF S+ S + V +YDP W+ S++ R Y + L+D++YV+GG
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD---- 72
Query: 241 GLTPLQSAEVFDPTTD---AWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCV 297
G + L S E D T D W V M R GL A + ++ G +
Sbjct: 73 GRSRLSSVECLDYTADEDGVWYSVAPMNVRR--GLAGATTLGDMIYVSGGFDGSRRHTSM 130
Query: 298 PQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELY---AFD 354
E YDP+ + W +G+ AR+ G L VV G +Y +D
Sbjct: 131 ---------------ERYDPNIDQWSM----LGDMQTARE-GAGL-VVASGVIYCLGGYD 169
Query: 355 PSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDFAD----SESPYLLSAFHGKLHVLTKDA 409
+ LNS ++ YD W V R A ++ Y++ F G H+ + +A
Sbjct: 170 GLNILNS--VEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 164 TLPQMPFCGCAIGA--VDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCK 221
T+ M C +GA + G LY + G+ S + + YDPI ++W TSM R C
Sbjct: 236 TVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQR--CD 293
Query: 222 TGI 224
G+
Sbjct: 294 AGV 296
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + ++ LY +GGF T+ + Y P N W T+M+ R+ +L++ +Y
Sbjct: 162 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA 221
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY 291
GG G L S E +D T+ W+ V M R+ A G+T +
Sbjct: 222 AGGYD----GQDQLNSVERYDVETETWTFVAPMKHRRS---------------ALGITVH 262
Query: 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325
GR+ V F V E YDPDT++W E+
Sbjct: 263 QGRIYVLGGYDGHTFLDSV--ECYDPDTDTWSEV 294
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + + C+Y GG+ + V RYD TW M R+ + ++YV
Sbjct: 209 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 268
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
+GG G T L S E +DP TD WSEV M R+
Sbjct: 269 LGGYD----GHTFLDSVECYDPDTDTWSEVTRMTSGRS 302
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 52/259 (20%)
Query: 158 WLGWND-TLPQMPFCGCAIGAVDGCLYVLGGFSRT-------SAMRCVRRYDPIANTWNE 209
WL D +P+ GC +G G LY +GG + + SA+ C Y+P+ N W+
Sbjct: 52 WLRLADLQVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDC---YNPMTNQWSP 105
Query: 210 ATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
MSV R G+++ +Y VGG G S E ++P D W V M +R
Sbjct: 106 CAPMSVPRNRIGVGVIDGHIYAVGGSH----GCIHHNSVERYEPERDEWHLVAPM-LTRR 160
Query: 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329
G+ A +L A G RL E Y P+ N W M M
Sbjct: 161 IGVGVAVLNRLL--YAVGGFDGTNRL--------------NSAECYYPERNEW-RMITAM 203
Query: 330 GEGWPARQAGTKLSVVLDGELYA---FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDF 386
++G + VL +YA +D LNS ++ YD + +TW V P++
Sbjct: 204 N----TIRSGAGV-CVLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFV---APMK-- 251
Query: 387 ADSESPYLLSAFHGKLHVL 405
S ++ G+++VL
Sbjct: 252 -HRRSALGITVHQGRIYVL 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 31/210 (14%)
Query: 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGG 241
+Y GG+ R S + + Y+P TW + V R+ ++ LY VGG + + G
Sbjct: 28 IYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 86
Query: 242 LTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL 301
T + + ++P T+ WS M R + I G+ G +
Sbjct: 87 NTDSSALDCYNPMTNQWSPCAPMSVPRNR-------------IGVGVID--GHIYAVGGS 131
Query: 302 YSWPFFVDVGGEIYDPDTNSW-VEMPIGMGEGWPARQAGTKLSVVLDGELYA---FDPSS 357
+ V E Y+P+ + W + P+ R+ G ++ VL+ LYA FD ++
Sbjct: 132 HGCIHHNSV--ERYEPERDEWHLVAPM------LTRRIGVGVA-VLNRLLYAVGGFDGTN 182
Query: 358 SLNSAKIKVYDQKEDTWKVVIGKVPIRDFA 387
LNSA + Y + + W+++ IR A
Sbjct: 183 RLNSA--ECYYPERNEWRMITAMNTIRSGA 210
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + ++ LY +GGF T+ + Y P N W T+M+ R+ +L++ +Y
Sbjct: 161 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA 220
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY 291
GG G L S E +D T+ W+ V M R+ A G+T +
Sbjct: 221 AGGYD----GQDQLNSVERYDVETETWTFVAPMKHRRS---------------ALGITVH 261
Query: 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325
GR+ V F V E YDPDT++W E+
Sbjct: 262 QGRIYVLGGYDGHTFLDSV--ECYDPDTDTWSEV 293
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + + C+Y GG+ + V RYD TW M R+ + ++YV
Sbjct: 208 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 267
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
+GG G T L S E +DP TD WSEV M R+
Sbjct: 268 LGGYD----GHTFLDSVECYDPDTDTWSEVTRMTSGRS 301
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 52/259 (20%)
Query: 158 WLGWND-TLPQMPFCGCAIGAVDGCLYVLGGFSRT-------SAMRCVRRYDPIANTWNE 209
WL D +P+ GC +G G LY +GG + + SA+ C Y+P+ N W+
Sbjct: 51 WLRLADLQVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDC---YNPMTNQWSP 104
Query: 210 ATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
MSV R G+++ +Y VGG G S E ++P D W V M +R
Sbjct: 105 CAPMSVPRNRIGVGVIDGHIYAVGGSH----GCIHHNSVERYEPERDEWHLVAPM-LTRR 159
Query: 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329
G+ A +L A G RL E Y P+ N W M M
Sbjct: 160 IGVGVAVLNRLL--YAVGGFDGTNRL--------------NSAECYYPERNEW-RMITAM 202
Query: 330 GEGWPARQAGTKLSVVLDGELYA---FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDF 386
++G + VL +YA +D LNS ++ YD + +TW V P++
Sbjct: 203 N----TIRSGAGV-CVLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFV---APMK-- 250
Query: 387 ADSESPYLLSAFHGKLHVL 405
S ++ G+++VL
Sbjct: 251 -HRRSALGITVHQGRIYVL 268
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 31/210 (14%)
Query: 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGG 241
+Y GG+ R S + + Y+P TW + V R+ ++ LY VGG + + G
Sbjct: 27 IYTAGGYFRQS-LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 242 LTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL 301
T + + ++P T+ WS M R + I G+ G +
Sbjct: 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNR-------------IGVGVID--GHIYAVGGS 130
Query: 302 YSWPFFVDVGGEIYDPDTNSW-VEMPIGMGEGWPARQAGTKLSVVLDGELYA---FDPSS 357
+ V E Y+P+ + W + P+ R+ G ++ VL+ LYA FD ++
Sbjct: 131 HGCIHHNSV--ERYEPERDEWHLVAPM------LTRRIGVGVA-VLNRLLYAVGGFDGTN 181
Query: 358 SLNSAKIKVYDQKEDTWKVVIGKVPIRDFA 387
LNSA + Y + + W+++ IR A
Sbjct: 182 RLNSA--ECYYPERNEWRMITAMNTIRSGA 209
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 54/260 (20%)
Query: 158 WLGWND-TLPQMPFCGCAIGAVDGCLYVLGGFSRT-------SAMRCVRRYDPIANTWNE 209
WL D +P+ GC +G G LY +GG + + SA+ C Y+P+ N W+
Sbjct: 44 WLRLADLQVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDC---YNPMTNQWSP 97
Query: 210 ATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
SMSV R G+++ +Y VGG G S E ++P D W V M +R
Sbjct: 98 CASMSVPRNRIGVGVIDGHIYAVGGSH----GCIHHSSVERYEPERDEWHLVAPM-LTRR 152
Query: 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329
G+ A +L A G RL E Y P+ N W +
Sbjct: 153 IGVGVAVLNRLL--YAVGGFDGTNRL--------------NSAECYYPERNEWRMIT--- 193
Query: 330 GEGWPARQAGTKLSV-VLDGELYA---FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRD 385
P + V VL +YA +D LNS ++ YD + +TW V P+R
Sbjct: 194 ----PMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFV---APMRH 244
Query: 386 FADSESPYLLSAFHGKLHVL 405
S ++ GK++VL
Sbjct: 245 H---RSALGITVHQGKIYVL 261
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + ++ LY +GGF T+ + Y P N W T M+ R+ +L++ +Y
Sbjct: 154 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYA 213
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY 291
GG G L S E +D T+ W+ V M R+ A G+T +
Sbjct: 214 AGGYD----GQDQLNSVERYDVETETWTFVAPMRHHRS---------------ALGITVH 254
Query: 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325
G++ V F V E YDPD+++W E+
Sbjct: 255 QGKIYVLGGYDGHTFLDSV--ECYDPDSDTWSEV 286
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + + C+Y GG+ + V RYD TW M R+ + K+YV
Sbjct: 201 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYV 260
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
+GG G T L S E +DP +D WSEV M R+
Sbjct: 261 LGGYD----GHTFLDSVECYDPDSDTWSEVTRMTSGRS 294
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGG 241
+Y GG+ R S + + Y+P +W + V R+ ++ LY VGG + + G
Sbjct: 20 IYTAGGYFRQS-LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 78
Query: 242 LTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL 301
T + + ++P T+ WS SM R N ++ + G C+ S
Sbjct: 79 NTDSSALDCYNPMTNQWSPCASMSVPR-----NRIGVGVIDGHIYAVGGSHG--CIHHSS 131
Query: 302 YSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA---FDPSSS 358
E Y+P+ + W + + R+ G ++ VL+ LYA FD ++
Sbjct: 132 V----------ERYEPERDEWHLVAPML-----TRRIGVGVA-VLNRLLYAVGGFDGTNR 175
Query: 359 LNSAKIKVYDQKEDTWKVVIGKVPIRDFA 387
LNSA + Y + + W+++ IR A
Sbjct: 176 LNSA--ECYYPERNEWRMITPMNTIRSGA 202
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 54/260 (20%)
Query: 158 WLGWND-TLPQMPFCGCAIGAVDGCLYVLGGFSRT-------SAMRCVRRYDPIANTWNE 209
WL D +P+ GC +G G LY +GG + + SA+ C Y+P+ N W+
Sbjct: 45 WLRLADLQVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDC---YNPMTNQWSP 98
Query: 210 ATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
SMSV R G+++ +Y VGG G S E ++P D W V M +R
Sbjct: 99 CASMSVPRNRIGVGVIDGHIYAVGGSH----GCIHHSSVERYEPERDEWHLVAPM-LTRR 153
Query: 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329
G+ A +L A G RL E Y P+ N W +
Sbjct: 154 IGVGVAVLNRLL--YAVGGFDGTNRL--------------NSAECYYPERNEWRMIT--- 194
Query: 330 GEGWPARQAGTKLSV-VLDGELYA---FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRD 385
P + V VL +YA +D LNS ++ YD + +TW V P+R
Sbjct: 195 ----PMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFV---APMRH 245
Query: 386 FADSESPYLLSAFHGKLHVL 405
S ++ GK++VL
Sbjct: 246 H---RSALGITVHQGKIYVL 262
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + ++ LY +GGF T+ + Y P N W T M+ R+ +L++ +Y
Sbjct: 155 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYA 214
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY 291
GG G L S E +D T+ W+ V M R+ A G+T +
Sbjct: 215 AGGYD----GQDQLNSVERYDVETETWTFVAPMRHHRS---------------ALGITVH 255
Query: 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325
G++ V F V E YDPD+++W E+
Sbjct: 256 QGKIYVLGGYDGHTFLDSV--ECYDPDSDTWSEV 287
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + + C+Y GG+ + V RYD TW M R+ + K+YV
Sbjct: 202 GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYV 261
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
+GG G T L S E +DP +D WSEV M R+
Sbjct: 262 LGGYD----GHTFLDSVECYDPDSDTWSEVTRMTSGRS 295
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGG 241
+Y GG+ R S + + Y+P +W + V R+ ++ LY VGG + + G
Sbjct: 21 IYTAGGYFRQS-LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 79
Query: 242 LTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL 301
T + + ++P T+ WS SM R N ++ + G C+ S
Sbjct: 80 NTDSSALDCYNPMTNQWSPCASMSVPR-----NRIGVGVIDGHIYAVGGSHG--CIHHSS 132
Query: 302 YSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA---FDPSSS 358
E Y+P+ + W + + R+ G ++ VL+ LYA FD ++
Sbjct: 133 V----------ERYEPERDEWHLVAPML-----TRRIGVGVA-VLNRLLYAVGGFDGTNR 176
Query: 359 LNSAKIKVYDQKEDTWKVVIGKVPIRDFA 387
LNSA + Y + + W+++ IR A
Sbjct: 177 LNSA--ECYYPERNEWRMITPMNTIRSGA 203
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 96/252 (38%), Gaps = 53/252 (21%)
Query: 165 LPQMPFCGCAIGAV--DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKT 222
+ ++P C G V G ++ +GGF+ + +R V YDP+ + W +M R+
Sbjct: 45 VAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA 104
Query: 223 GILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLK 282
+LN LY VGG G T L S E ++ ++ W V M R+ +
Sbjct: 105 AVLNGLLYAVGGFD----GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLY- 159
Query: 283 PIATGMTSYMGRLCVPQ------SLYSWPFFVD-------------------VGG----- 312
A G R C+ + W + + VGG
Sbjct: 160 --AVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL 217
Query: 313 -----EIYDPDTNSWVEMP-IGMGEGWPARQAGTKLSVVLDGELYAF-DPSSSLNSAKIK 365
E+YDP TN+W ++ + M R AG ++G LY S N A ++
Sbjct: 218 VRKSVEVYDPTTNAWRQVADMNMCR----RNAGV---CAVNGLLYVVGGDDGSCNLASVE 270
Query: 366 VYDQKEDTWKVV 377
Y+ D W VV
Sbjct: 271 YYNPTTDKWTVV 282
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G +G ++ LY +GG + V YDP N W + M++ R +N LYV
Sbjct: 197 GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYV 256
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
VGG G L S E ++PTTD W+ V S
Sbjct: 257 VGG----DDGSCNLASVEYYNPTTDKWTVVSS 284
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 55/263 (20%)
Query: 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI--LNDKLYVVGGVSRAR 239
L V+ G A+R V YD W++ + R C+ G+ + ++ VGG +
Sbjct: 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR--CRAGMVYMAGLVFAVGGFN--- 71
Query: 240 GGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPI-----ATGMTSYMG- 293
G +++ + +DP D W+ V +M R+ L A +L + +TG++S
Sbjct: 72 -GSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAVLNGLLYAVGGFDGSTGLSSVEAY 129
Query: 294 ---------------RLCVPQSLYSWPFFVDVGG------------EIYDPDTNSWVEMP 326
R VGG E Y+ TN W +
Sbjct: 130 NIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA 189
Query: 327 IGMGEGWPARQAGTKLSVVLDGELYAFDPSSS-LNSAKIKVYDQKEDTWKVVIGKVPIRD 385
R++G + VL+ LYA L ++VYD + W+ V R
Sbjct: 190 -----EMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243
Query: 386 FADSESPYLLSAFHGKLHVLTKD 408
A + A +G L+V+ D
Sbjct: 244 NAG------VCAVNGLLYVVGGD 260
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 172 GCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYV 231
G + ++ LY +GGF T+ + Y P N W T+ + R+ +L++ +Y
Sbjct: 161 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYA 220
Query: 232 VGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSY 291
GG G L S E +D T+ W+ V R+ A G+T +
Sbjct: 221 AGGYD----GQDQLNSVERYDVETETWTFVAPXKHRRS---------------ALGITVH 261
Query: 292 MGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEM 325
GR+ V F V E YDPDT++W E+
Sbjct: 262 QGRIYVLGGYDGHTFLDSV--ECYDPDTDTWSEV 293
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 52/259 (20%)
Query: 158 WLGWND-TLPQMPFCGCAIGAVDGCLYVLGGFSRT-------SAMRCVRRYDPIANTWNE 209
WL D +P+ GC +G G LY +GG + + SA+ C Y+P N W+
Sbjct: 51 WLRLADLQVPRSGLAGCVVG---GLLYAVGGRNNSPDGNTDSSALDC---YNPXTNQWSP 104
Query: 210 ATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
SV R G+++ +Y VGG G S E ++P D W V +R
Sbjct: 105 CAPXSVPRNRIGVGVIDGHIYAVGGSH----GCIHHNSVERYEPERDEWHLVAPX-LTRR 159
Query: 270 QGLPNAFFADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGM 329
G+ A +L A G RL E Y P+ N W +
Sbjct: 160 IGVGVAVLNRLL--YAVGGFDGTNRL--------------NSAECYYPERNEWRXI---- 199
Query: 330 GEGWPARQAGTKLSVVLDGELYA---FDPSSSLNSAKIKVYDQKEDTWKVVIGKVPIRDF 386
++G + VL +YA +D LNS ++ YD + +TW V P +
Sbjct: 200 -TAXNTIRSGAGV-CVLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFV---APXK-- 250
Query: 387 ADSESPYLLSAFHGKLHVL 405
S ++ G+++VL
Sbjct: 251 -HRRSALGITVHQGRIYVL 268
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 182 LYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGG 241
+Y GG+ R S + + Y+P TW + V R+ ++ LY VGG + + G
Sbjct: 27 IYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 242 LTPLQSAEVFDPTTDAWSEVPSMPFSRAQGLPNAFFADMLKPIATGMTSYMGRLCVPQSL 301
T + + ++P T+ WS P P S + N ++ + G C+ +
Sbjct: 86 NTDSSALDCYNPXTNQWS--PCAPXSVPR---NRIGVGVIDGHIYAVGGSHG--CIHHNS 138
Query: 302 YSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVVLDGELYA---FDPSSS 358
E Y+P+ + W + + R+ G ++ VL+ LYA FD ++
Sbjct: 139 V----------ERYEPERDEWHLVAPXL-----TRRIGVGVA-VLNRLLYAVGGFDGTNR 182
Query: 359 LNSAKIKVYDQKEDTWKVVIGKVPIRDFA 387
LNSA + Y + + W+ + IR A
Sbjct: 183 LNSA--ECYYPERNEWRXITAXNTIRSGA 209
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 180 GCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRA 218
G +YVLGG+ + + V YDP +TW+E T + GR+
Sbjct: 263 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTSGRS 301
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 21/188 (11%)
Query: 96 LYILTKVSDDRL--LWHALDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAE 153
LY+ + D L + LD +S W LPPLP+ + ++ + G ++
Sbjct: 65 LYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEA 124
Query: 154 VVRGWLGWN---------DTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRR---YD 201
+ L ++ LP + G + + +G +Y LGG +T +C R Y+
Sbjct: 125 SLDSVLCYDPVAAKWSEVKNLP-IKVYGHNVISHNGMIYCLGG--KTDDKKCTNRVFIYN 181
Query: 202 PIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEV 261
P W + M R+ I K+ + GGV+ GL+ S E FD T+ W +
Sbjct: 182 PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE--DGLSA--SVEAFDLKTNKWEVM 237
Query: 262 PSMPFSRA 269
P R+
Sbjct: 238 TEFPQERS 245
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 28/214 (13%)
Query: 62 FYLNLRAVSRKWKATVTSPELFEVR--KELGTTEEWLYIL------TKVSDDRLLWHALD 113
++ L VS +W V P L R LG ++ +Y++ T+ S D +L + D
Sbjct: 79 YFFQLDNVSSEW---VGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY--D 133
Query: 114 PLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAEVVRGWL------GWNDTLP- 166
P++ +W + LP V + ++ + G R ++ W D P
Sbjct: 134 PVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM 193
Query: 167 QMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILN 226
+ P + G + + GG + V +D N W T R+ L
Sbjct: 194 KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253
Query: 227 DKLYVVGGVSRARGGLTPLQSAEVFDPT--TDAW 258
LY +GG + + L+S E F PT D W
Sbjct: 254 GSLYAIGGFA-----MIQLESKE-FAPTEVNDIW 281
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 112 LDPLSKRWQRLPPLPNVVDEEESRKSSSGLWNMVGSGIKIAE-----------VVRGWLG 160
D L W +PPLP+ ++ + ++ + G IK E + W G
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-G 130
Query: 161 WNDTLPQMPFCGCAIGAVDGCLYVLGGFSRTSAMRCVRR---YDPIANTWNEATSMSVGR 217
+D LP + + + +D +YV+GG + S +C+ + YDP W E M R
Sbjct: 131 ESDPLPYVVYGHTVLSHMD-LVYVIGG--KGSDRKCLNKMCVYDPKKFEWKELAPMQTAR 187
Query: 218 AYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPFSRA 269
+ + + ++ V GV+ GLT SAEV+ T + W+ + P R+
Sbjct: 188 SLFGATVHDGRIIVAAGVTDT--GLT--SSAEVYSITDNKWAPFEAFPQERS 235
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 164 TLPQMPFCGCAIGAVD--GCLYVLGGFSRTSA----MRCVRRYDPIANTWNEATSMSVGR 217
T P M C+ G V+ G +YV GG + + YDP TW E M R
Sbjct: 132 TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR 191
Query: 218 AYCKTGILNDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPSMPF 266
+ DK++ VGG + GL L + E +D + W V MP+
Sbjct: 192 KNHGLVFVKDKIFAVGG----QNGLGGLDNVEYYDIKLNEWKMVSPMPW 236
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 166 PQMPFCGCAIGAVDGCLYVLGGFS-RTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGI 224
P P A A +G +Y GG SA+ YD +W+ SM R C G+
Sbjct: 88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR--CSHGM 145
Query: 225 L--NDKLYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEV-PSMPFSRAQGLPNAFFADML 281
+ N +YV GG L S EV+DP T+ W+E+ P + + GL F D
Sbjct: 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGL--VFVKD-- 201
Query: 282 KPIATGMTSYMGRL 295
K A G + +G L
Sbjct: 202 KIFAVGGQNGLGGL 215
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILNDKLYVVGGVSRA 238
D +Y+LGG S+ ++ + Y+ + ++W R K+Y GG +
Sbjct: 55 DNVVYILGG-SQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGG---S 110
Query: 239 RGGLTPLQSAEVFDPTTDAWSEVPSMPFSR-AQGLPNAFFADMLKPIATGMTSYMGRLCV 297
G + L E +D T++W PSM R + G+ A+ L + G +G
Sbjct: 111 EVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE---ANGLIYVCGGS---LGNNVS 164
Query: 298 PQSLYSWPFFVDVGGEIYDPDTNSWVEMPIGMGEGWPARQAGTKLSVV-LDGELYAFDPS 356
+ L S E+YDP T +W E+ P +A +V + +++A
Sbjct: 165 GRVLNSC--------EVYDPATETWTELC-------PMIEARKNHGLVFVKDKIFAVGGQ 209
Query: 357 SSLNSA-KIKVYDQKEDTWKVVI----GKVPIRDFADSESPYLLSAFHG 400
+ L ++ YD K + WK+V V ++ A Y+L+ F G
Sbjct: 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG 258
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 165 LPQMPFCGCAIGAVDGCLYVLGGFSR-----TSAMRCVRRYDPIANTWNEATSMS-VGRA 218
P P +DG LYV GG + T V +Y+P N+W + S + G A
Sbjct: 51 FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAPXGXA 110
Query: 219 YCKTGILNDKLYVVGGVSR 237
T + N K YV GGV++
Sbjct: 111 GHVTFVHNGKAYVTGGVNQ 129
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 165 LPQMPF-CGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIAN--TWNEATSMSVG-RAYC 220
LP+ P GA+D +G SA + D A W + G R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIG---LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA 59
Query: 221 KTGILNDKLYVVGGVSRARGGLTP-LQSAEVFDPTTDAWSEVPS 263
+ ++ LYV GG+ + GLT ++P T++W ++ S
Sbjct: 60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXS 103
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-K 228
FC +G + V GG + + YD +++W M V R Y + ++D +
Sbjct: 227 FCPGISMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 282
Query: 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
++ +GG GG+ ++ EV+ P++ W+ +P+
Sbjct: 283 VFTIGG--SGSGGVFE-KNGEVYSPSSKTWTSLPN 314
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-K 228
FC +G + V GG + + YD +++W M V R Y + ++D +
Sbjct: 227 FCPGISMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 282
Query: 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
++ +GG + G ++ EV+ P++ W+ +P+
Sbjct: 283 VFTIGG---SHSGGVFEKNGEVYSPSSKTWTSLPN 314
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-K 228
FC +G + V GG + + YD +++W M V R Y + ++D +
Sbjct: 249 FCPGISMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 304
Query: 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
++ +GG GG+ ++ EV+ P++ W+ +P+
Sbjct: 305 VFTIGG--SFSGGVFE-KNGEVYSPSSKTWTSLPN 336
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-K 228
FC +G + V GG + + YD +++W M V R Y + ++D +
Sbjct: 227 FCPGISMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 282
Query: 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
++ +GG GG+ ++ EV+ P++ W+ +P+
Sbjct: 283 VFTIGG--SFSGGVFE-KNGEVYSPSSKTWTSLPN 314
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-K 228
FC +G + V GG + + YD +++W M V R Y + ++D +
Sbjct: 227 FCPGISMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 282
Query: 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
++ +GG GG+ ++ EV+ P++ W+ +P+
Sbjct: 283 VFTIGG--SWSGGVFE-KNGEVYSPSSKTWTSLPN 314
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 170 FCGCAIGAVDGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-K 228
FC +G + V GG + + YD +++W M V R Y + ++D +
Sbjct: 227 FCPGISMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 282
Query: 229 LYVVGGVSRARGGLTPLQSAEVFDPTTDAWSEVPS 263
++ +GG GG+ ++ EV+ P++ W+ +P+
Sbjct: 283 VFTIGG--SWSGGVFE-KNGEVYSPSSKTWTSLPN 314
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 179 DGCLYVLGGFSRTSAMRCVRRYDPIANTWNEATSMSVGRAYCKTGILND-KLYVVGGVSR 237
+G + V GG + + YD +++W M V R Y + ++D +++ +GG
Sbjct: 253 NGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--S 306
Query: 238 ARGGLTPLQSAEVFDPTTDAWSEVPS 263
GG+ ++ EV+ P++ W+ +P+
Sbjct: 307 WSGGVFE-KNGEVYSPSSKTWTSLPN 331
>pdb|1VRA|A Chain A, Crystal Structure Of Arginine Biosynthesis Bifunctional
Protein Argj (10175521) From Bacillus Halodurans At 2.00
A Resolution
Length = 208
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 204 ANTWNEA--TSMSVGRAYCKTGILNDKLYVVGGVSRARGGLTP 244
A+ +NEA T+ +V + C I+N K VGGV++ G + P
Sbjct: 163 AHAFNEAILTTDTVEKHTCYQTIVNGKTVTVGGVAKGSGXIHP 205
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 422 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 471
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 139 SGLWNMVGSGIKIAEVV-------RGWLGWNDTLPQMPFCGCAIGAVDGC 181
+G+ ++ G+K ++V RGW G N +PF G A G V G
Sbjct: 399 NGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGT 448
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,320,532
Number of Sequences: 62578
Number of extensions: 595336
Number of successful extensions: 1337
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 76
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)